Query 025626
Match_columns 250
No_of_seqs 172 out of 382
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 07:46:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1649 SWI-SNF chromatin remo 100.0 6.9E-59 1.5E-63 435.5 13.0 212 10-222 164-384 (397)
2 PF04855 SNF5: SNF5 / SMARCB1 100.0 5.4E-57 1.2E-61 405.6 21.2 194 16-223 2-229 (244)
3 PF04855 SNF5: SNF5 / SMARCB1 99.7 6.3E-18 1.4E-22 152.7 9.3 73 94-166 5-78 (244)
4 KOG1649 SWI-SNF chromatin remo 99.7 1.3E-18 2.9E-23 164.4 5.0 72 93-164 172-243 (397)
5 PF09070 PFU: PFU (PLAA family 87.3 1.3 2.8E-05 36.6 5.0 51 26-81 60-110 (116)
6 PF05402 PqqD: Coenzyme PQQ sy 64.7 6.7 0.00015 27.8 2.6 44 40-83 20-63 (68)
7 COG1405 SUA7 Transcription ini 64.0 12 0.00027 35.1 4.9 20 123-142 190-209 (285)
8 PHA00666 putative protease 46.0 1.2E+02 0.0027 28.1 8.0 19 50-68 97-117 (233)
9 COG1405 SUA7 Transcription ini 43.3 47 0.001 31.3 5.1 39 47-86 189-227 (285)
10 PF07531 TAFH: NHR1 homology t 37.8 35 0.00076 27.5 2.9 38 44-81 35-77 (96)
11 PF09070 PFU: PFU (PLAA family 37.0 1.2E+02 0.0025 25.1 5.9 54 98-157 57-110 (116)
12 PF09021 HutP: HutP; InterPro 32.5 45 0.00097 28.0 2.9 11 201-211 94-105 (130)
13 PF02022 Integrase_Zn: Integra 30.7 58 0.0012 22.1 2.6 21 56-76 12-32 (40)
14 TIGR03859 PQQ_PqqD coenzyme PQ 30.1 50 0.0011 24.9 2.6 38 40-77 34-71 (81)
15 PRK00423 tfb transcription ini 28.7 1.3E+02 0.0029 28.1 5.6 20 122-141 214-233 (310)
16 PRK05325 hypothetical protein; 28.6 39 0.00084 33.5 2.1 21 47-67 99-119 (401)
17 TIGR02877 spore_yhbH sporulati 28.5 38 0.00083 33.2 2.1 20 48-67 112-131 (371)
18 PTZ00202 tuzin; Provisional 28.0 1.1E+02 0.0024 31.5 5.2 38 126-163 321-358 (550)
19 PF04358 DsrC: DsrC like prote 26.3 2.9E+02 0.0062 22.5 6.5 54 105-161 2-58 (109)
20 cd04752 Commd4 COMM_Domain con 24.4 1.6E+02 0.0035 25.3 5.0 32 124-157 59-90 (174)
21 cd07979 TAF9 TATA Binding Prot 23.5 2.3E+02 0.005 23.1 5.5 46 130-179 6-51 (117)
22 PF13058 DUF3920: Protein of u 23.3 39 0.00084 28.3 0.9 35 210-244 69-103 (126)
23 smart00549 TAFH TAF homology. 23.0 1.2E+02 0.0026 24.4 3.6 23 45-67 35-57 (92)
24 PRK00423 tfb transcription ini 22.4 1.7E+02 0.0037 27.4 5.1 36 45-81 212-247 (310)
25 PF13591 MerR_2: MerR HTH fami 22.2 2.1E+02 0.0045 21.6 4.7 39 124-164 41-79 (84)
26 PF05402 PqqD: Coenzyme PQQ sy 20.4 84 0.0018 22.1 2.1 28 114-141 19-46 (68)
No 1
>KOG1649 consensus SWI-SNF chromatin remodeling complex, Snf5 subunit [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.9e-59 Score=435.49 Aligned_cols=212 Identities=36% Similarity=0.490 Sum_probs=199.8
Q ss_pred cccccccCCCCceeeeeEEEeeeCCcEEEEEEEecCCCCCCCHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHHHhhccc
Q 025626 10 KAPVKFRMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQLTEFRSYE 88 (250)
Q Consensus 10 ~~~~~~~~p~~E~LVPIRLdie~dg~klrD~FlWNlnE~~iTPE~FA~~lc~DL~LP~-~f~~~Ia~sI~eQl~ey~~~~ 88 (250)
+.++++.++++|.|||||||||++|+||||+|+||+||+.||||+||++||+||+||+ .|+++|++||++||++|..++
T Consensus 164 ~~~~~~~~~~~e~lVPIRLDie~dg~klrDtFtWN~ndk~itpe~FAei~c~Dldl~~~~~v~qIa~sIq~Qied~~~~~ 243 (397)
T KOG1649|consen 164 KEPKKANAETPEVLVPIRLDIELDGQKLRDTFTWNKNDKLITPEMFAEILCKDLDLPPATFVTQIAQSIQQQIEDYEPDP 243 (397)
T ss_pred HHHHHhhCCCCceeeeEEEeeecccchhhhhcccccCCccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 4577889999999999999999999999999999999999999999999999999976 899999999999999999999
Q ss_pred CCCCCCCceeeeeEEEEEeCCeEEEEeeeecCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHh-
Q 025626 89 GQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIAIQSVAS- 167 (250)
Q Consensus 89 ~~~~~~~e~~VpIkLdI~i~~~~l~D~FeWdL~~~~~tPE~FA~~lc~DLgL~~~ef~~aIA~sIrEQL~e~k~~~v~~- 167 (250)
+.++.++|.||+|||||++|+..|.|||||||+++.++||+||+.+|+||||+ |||+|||||||||||+.++|..+.+
T Consensus 244 ~~~~~~~d~rviikLdi~vg~~~l~DQFeWdls~~~~~PEEFA~~lC~dLGL~-gEf~taIA~SIreql~~~~k~~~~~D 322 (397)
T KOG1649|consen 244 AIEMNSGDLRVIIKLDINVGNLSLVDQFEWDLSNPENSPEEFATSLCQDLGLG-GEFVTAIAYSIREQLLWIKKTYAFSD 322 (397)
T ss_pred cccccCCceEEEEEEEEEeccceehhhheeccCCCCCCHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999 6999999999999999999999999
Q ss_pred -----HHHhhhhhcCCCCcccccccccCCcchhhhhhhccccceEee--eccccchHHHHHH
Q 025626 168 -----AREIKISKKGRRGAEHAISSKGGGNALDLMKLFRYNSSVVRY--VWSFHTEFSWKIT 222 (250)
Q Consensus 168 -----~~e~~~s~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~--~~~~~~p~~~~~~ 222 (250)
+.+..+++.++++.+.+.+.+.-.+-+++++++..+.++-|. -|..+++.....+
T Consensus 323 ~~~~d~~p~~~~~~~~r~~~~~s~w~P~letlt~ae~ek~~~~~dR~~RrmrR~~~~~~~~~ 384 (397)
T KOG1649|consen 323 GSPIDAAPLPTSDIRRRNDSEGSAWCPFLETLTDAEMEKKERDQDRNTRRMRRLAGRADRGT 384 (397)
T ss_pred CcccccccccccCccccCcchhhhccchhhhccHHHHHHHhhhhHHHHHHHHHhcccccccc
Confidence 889999999999999999999999999999999999999887 6666666554433
No 2
>PF04855 SNF5: SNF5 / SMARCB1 / INI1; InterPro: IPR006939 SNF5 is a component of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling complex that regulates the transcription of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class complexes characterised so far []. This family consists of the conserved region of SNF5, including a direct repeat motif. SNF5 is essential for the assembly promoter targeting and chromatin remodelling activity of the SWI-SNF complex []. SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily b, member 1, and also INI1 for integrase interactor 1. Loss-of function mutations in SNF5 are thought to contribute to oncogenesis in malignant rhabdoid tumours (MRTs) [].; GO: 0006338 chromatin remodeling, 0000228 nuclear chromosome
Probab=100.00 E-value=5.4e-57 Score=405.59 Aligned_cols=194 Identities=35% Similarity=0.509 Sum_probs=164.5
Q ss_pred cCCCCceeeeeEEEeee-CCcEEEEEEEecCCCCCCCHHHHHHHHHHHcCCChH-HHHHHHHHHHHHHHHhhcccCCCC-
Q 025626 16 RMPTADNLVPIRLDIET-EGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQ-FITQIAQSIQTQLTEFRSYEGQDM- 92 (250)
Q Consensus 16 ~~p~~E~LVPIRLdie~-dg~klrD~FlWNlnE~~iTPE~FA~~lc~DL~LP~~-f~~~Ia~sI~eQl~ey~~~~~~~~- 92 (250)
++..++.|||||||+|+ +|+||||+|+||+||+.+|||+||++||+||+||+. |+++|++||++||++|+..+..++
T Consensus 2 qa~~~e~LVPIRLdie~~~~~klrD~FlWNlne~~itpe~FA~~lc~Dl~lp~~~~~~~I~~sI~~Qi~e~~~~a~~~l~ 81 (244)
T PF04855_consen 2 QAELPENLVPIRLDIEIRDGYKLRDTFLWNLNEPLITPEEFAEILCEDLDLPPSFFVQQIANSIREQIEEYASVAAHPLF 81 (244)
T ss_pred CccCCceeeeEEEEeecCCCceEEEEEEeeCCCCCCCHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 45678899999999999 999999999999999999999999999999999986 699999999999999998743222
Q ss_pred ----------------------------CCCceeeeeEEEEEeCCeEEEEeeeecCCCCCCCHHHHHHHHHhhcCCCCCC
Q 025626 93 ----------------------------YTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPE 144 (250)
Q Consensus 93 ----------------------------~~~e~~VpIkLdI~i~~~~l~D~FeWdL~~~~~tPE~FA~~lc~DLgL~~~e 144 (250)
..+++||+|+|||++|++.|+|+|||||+++.++||+||+++|+||||+ +|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~I~LdI~ig~~~l~DqFEWDL~~~~~~PE~FA~~~c~dLgL~-~E 160 (244)
T PF04855_consen 82 QNPEMEPSEKRLDPEDPYTAFADSSLGSPDDDLRVIIKLDITIGNHLLVDQFEWDLSNPPNSPEEFARVLCADLGLP-GE 160 (244)
T ss_pred cccccccccccccccccccccccccccCCCCceEEEEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHcCCc-HH
Confidence 1268999999999999999999999999999999999999999999999 69
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcCCCCcccccccccCCcchhhhhhhccccceEee---eccccchHHHHH
Q 025626 145 VGPAVAFAIREQLYEIAIQSVASAREIKISKKGRRGAEHAISSKGGGNALDLMKLFRYNSSVVRY---VWSFHTEFSWKI 221 (250)
Q Consensus 145 f~~aIA~sIrEQL~e~k~~~v~~~~e~~~s~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~---~~~~~~p~~~~~ 221 (250)
|+|||||||||||.+++|+++..+ ..+.+.... ...++...++|...|++|+ +++.|+|.+.+|
T Consensus 161 f~~aIahsIrEq~~~~kK~~~~~g---------~~~~~~~~~----~~~~~~~~~~~~~~~~~r~~~~~~~~w~P~le~L 227 (244)
T PF04855_consen 161 FVPAIAHSIREQLLKYKKELCESG---------YLFDGSPVE----DDEIRNAFLPGPLAGVRRDPDNEADEWTPRLEEL 227 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---------cccCCCCcc----cchhhhhcccccccceeecCccchhhcCCchhhC
Confidence 999999999999999999986542 111111110 0111222355678899994 999999999999
Q ss_pred Hh
Q 025626 222 TS 223 (250)
Q Consensus 222 ~~ 223 (250)
|.
T Consensus 228 s~ 229 (244)
T PF04855_consen 228 SP 229 (244)
T ss_pred CH
Confidence 86
No 3
>PF04855 SNF5: SNF5 / SMARCB1 / INI1; InterPro: IPR006939 SNF5 is a component of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling complex that regulates the transcription of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class complexes characterised so far []. This family consists of the conserved region of SNF5, including a direct repeat motif. SNF5 is essential for the assembly promoter targeting and chromatin remodelling activity of the SWI-SNF complex []. SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily b, member 1, and also INI1 for integrase interactor 1. Loss-of function mutations in SNF5 are thought to contribute to oncogenesis in malignant rhabdoid tumours (MRTs) [].; GO: 0006338 chromatin remodeling, 0000228 nuclear chromosome
Probab=99.74 E-value=6.3e-18 Score=152.70 Aligned_cols=73 Identities=36% Similarity=0.619 Sum_probs=67.6
Q ss_pred CCceeeeeEEEEEe-CCeEEEEeeeecCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 025626 94 TAEKIVPIKLDLRV-NHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIAIQSVA 166 (250)
Q Consensus 94 ~~e~~VpIkLdI~i-~~~~l~D~FeWdL~~~~~tPE~FA~~lc~DLgL~~~ef~~aIA~sIrEQL~e~k~~~v~ 166 (250)
.++.+||||||+++ ++++++|+|+||+|++.+|||+||++||.||+||...|+++|+.+|++||.+|+..+..
T Consensus 5 ~~e~LVPIRLdie~~~~~klrD~FlWNlne~~itpe~FA~~lc~Dl~lp~~~~~~~I~~sI~~Qi~e~~~~a~~ 78 (244)
T PF04855_consen 5 LPENLVPIRLDIEIRDGYKLRDTFLWNLNEPLITPEEFAEILCEDLDLPPSFFVQQIANSIREQIEEYASVAAH 78 (244)
T ss_pred CCceeeeEEEEeecCCCceEEEEEEeeCCCCCCCHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 46789999999999 99999999999999999999999999999999995347999999999999999987643
No 4
>KOG1649 consensus SWI-SNF chromatin remodeling complex, Snf5 subunit [Chromatin structure and dynamics; Transcription]
Probab=99.74 E-value=1.3e-18 Score=164.35 Aligned_cols=72 Identities=28% Similarity=0.545 Sum_probs=67.3
Q ss_pred CCCceeeeeEEEEEeCCeEEEEeeeecCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHH
Q 025626 93 YTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIAIQS 164 (250)
Q Consensus 93 ~~~e~~VpIkLdI~i~~~~l~D~FeWdL~~~~~tPE~FA~~lc~DLgL~~~ef~~aIA~sIrEQL~e~k~~~ 164 (250)
.+++.+|||||||+.+|++|+|+|+||.|++.+|||+||+++|+||+|+...|+++||.+|++||++|....
T Consensus 172 ~~~e~lVPIRLDie~dg~klrDtFtWN~ndk~itpe~FAei~c~Dldl~~~~~v~qIa~sIq~Qied~~~~~ 243 (397)
T KOG1649|consen 172 ETPEVLVPIRLDIELDGQKLRDTFTWNKNDKLITPEMFAEILCKDLDLPPATFVTQIAQSIQQQIEDYEPDP 243 (397)
T ss_pred CCCceeeeEEEeeecccchhhhhcccccCCccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 357899999999999999999999999999999999999999999999756999999999999999996554
No 5
>PF09070 PFU: PFU (PLAA family ubiquitin binding); InterPro: IPR015155 The PFU (for PLAA family ubiquitin binding domain) is an ubiquitin binding domain with no homology to several known ubiquitin binding domains (e.g., UIM, NZF, UBA, UEV, UBP, or CUE domains). The PFU domain appears to be unique to the PLAA family of proteins. A single member of this family of proteins exists in every eukaryotic species examined. Each of these homologues possesses identical domain structure: an N-terminal domain containing seven WD40 repeats, a central PFU domain, and a C-terminal PUL domain, which directly binds to Cdc48, a member of the AAA-ATPase family of molecular chaperone []. In addition to ubiquitin, the PFU domain of DOA1 has been shown to bind to the SH3 domain []. Secondary structure predictions of the PFU domain suggest the presence of an extensive length of beta-sheet, N-terminal to an alpha-helical region []. Some proteins known to contain a PFU domain include: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in the ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein Lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 2K8B_B 2K8A_A 2K8C_B 2K89_A 3L3F_X 3PST_A 3PSP_A.
Probab=87.28 E-value=1.3 Score=36.57 Aligned_cols=51 Identities=27% Similarity=0.422 Sum_probs=33.8
Q ss_pred eEEEeeeCCcEEEEEEEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 025626 26 IRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQL 81 (250)
Q Consensus 26 IRLdie~dg~klrD~FlWNlnE~~iTPE~FA~~lc~DL~LP~~f~~~Ia~sI~eQl 81 (250)
+.+|++-++-.++ .-.|.+| .|..=|+.+|.+.+||..|..+|++-|.+..
T Consensus 60 f~Vdi~dg~~~lk--LpyN~~d---nP~~aAq~Fi~~n~Lp~~yl~qI~~FI~~N~ 110 (116)
T PF09070_consen 60 FDVDIEDGGPPLK--LPYNKGD---NPYEAAQKFIERNNLPQSYLDQIANFIIQNT 110 (116)
T ss_dssp EEE--STTSS-EE--EEE-TTS----HHHHHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred EEEEecCCCccee--CCccCCC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 4444443333332 4467777 7999999999999999999999999998743
No 6
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=64.68 E-value=6.7 Score=27.81 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=28.3
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 025626 40 AFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTE 83 (250)
Q Consensus 40 ~FlWNlnE~~iTPE~FA~~lc~DL~LP~~f~~~Ia~sI~eQl~e 83 (250)
.|+|++=+...|+++.++.+|+.++.++.-...-+.+.-+||.+
T Consensus 20 ~~Iw~~~~g~~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~ 63 (68)
T PF05402_consen 20 AFIWELLDGPRTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLRE 63 (68)
T ss_dssp HHHHHH--SSS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 47899778889999999999999999985444444444444544
No 7
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=64.02 E-value=12 Score=35.06 Aligned_cols=20 Identities=25% Similarity=0.664 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHHhhcCCCC
Q 025626 123 YESDPEEFARTFCNDMGIED 142 (250)
Q Consensus 123 ~~~tPE~FA~~lc~DLgL~~ 142 (250)
+..+|++|-..+|.+|||++
T Consensus 190 ~~~~p~~yi~rf~s~L~l~~ 209 (285)
T COG1405 190 PPVDPSDYIPRFASKLGLSD 209 (285)
T ss_pred CCCCHHHHHHHHHHHcCCCH
Confidence 45799999999999999993
No 8
>PHA00666 putative protease
Probab=45.99 E-value=1.2e+02 Score=28.05 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=13.4
Q ss_pred CCHHHHH--HHHHHHcCCChH
Q 025626 50 SEVVVFA--KRTVRDLKLPPQ 68 (250)
Q Consensus 50 iTPE~FA--~~lc~DL~LP~~ 68 (250)
++++.+. +-+|++|+||++
T Consensus 97 lD~~~l~~F~~~a~ElgLtqE 117 (233)
T PHA00666 97 LDTGALGAFEPVARELNLTNE 117 (233)
T ss_pred CCHHHHHHHHHHHHHhCCCHH
Confidence 4455444 578999999974
No 9
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=43.35 E-value=47 Score=31.26 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhc
Q 025626 47 DPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTEFRS 86 (250)
Q Consensus 47 E~~iTPE~FA~~lc~DL~LP~~f~~~Ia~sI~eQl~ey~~ 86 (250)
-+.+.|+.|..++|.||+||+.. ...|.-|-++..+...
T Consensus 189 ~~~~~p~~yi~rf~s~L~l~~~v-~~~a~ei~~~~~~~g~ 227 (285)
T COG1405 189 IPPVDPSDYIPRFASKLGLSDEV-RRKAIEIVKKAKRAGL 227 (285)
T ss_pred CCCCCHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHhCc
Confidence 34479999999999999999643 3344444444444433
No 10
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=37.84 E-value=35 Score=27.47 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=25.7
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHH
Q 025626 44 NPSDPDSEVVVFAKRTVRDLKLPP-----QFITQIAQSIQTQL 81 (250)
Q Consensus 44 NlnE~~iTPE~FA~~lc~DL~LP~-----~f~~~Ia~sI~eQl 81 (250)
++-+..|++|+|...|=++++.|+ .|...=.-+.|+.+
T Consensus 35 ~L~~~~i~~EeF~~~Lq~~lns~pqP~lvPFLK~~lp~Lr~~l 77 (96)
T PF07531_consen 35 NLVDGKIEAEEFTSKLQEELNSSPQPYLVPFLKKSLPALRQEL 77 (96)
T ss_dssp HHHTTSS-HHHHHHHHHHHCTSS--TTHHHHHHHHHHHHHHCH
T ss_pred HHHcCCCCHHHHHHHHHHHhcCCCCcchHHHHHHhHHHHHHHH
Confidence 456789999999999999999986 34443334444433
No 11
>PF09070 PFU: PFU (PLAA family ubiquitin binding); InterPro: IPR015155 The PFU (for PLAA family ubiquitin binding domain) is an ubiquitin binding domain with no homology to several known ubiquitin binding domains (e.g., UIM, NZF, UBA, UEV, UBP, or CUE domains). The PFU domain appears to be unique to the PLAA family of proteins. A single member of this family of proteins exists in every eukaryotic species examined. Each of these homologues possesses identical domain structure: an N-terminal domain containing seven WD40 repeats, a central PFU domain, and a C-terminal PUL domain, which directly binds to Cdc48, a member of the AAA-ATPase family of molecular chaperone []. In addition to ubiquitin, the PFU domain of DOA1 has been shown to bind to the SH3 domain []. Secondary structure predictions of the PFU domain suggest the presence of an extensive length of beta-sheet, N-terminal to an alpha-helical region []. Some proteins known to contain a PFU domain include: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in the ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein Lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 2K8B_B 2K8A_A 2K8C_B 2K89_A 3L3F_X 3PST_A 3PSP_A.
Probab=36.96 E-value=1.2e+02 Score=25.13 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=34.3
Q ss_pred eeeeEEEEEeCCeEEEEeeeecCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHH
Q 025626 98 IVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQL 157 (250)
Q Consensus 98 ~VpIkLdI~i~~~~l~D~FeWdL~~~~~tPE~FA~~lc~DLgL~~~ef~~aIA~sIrEQL 157 (250)
-..+.+||.-++..+.=.| |. .-+|-.=|+.+|.+-+|| ..|..+|+.-|....
T Consensus 57 DyVf~Vdi~dg~~~lkLpy--N~---~dnP~~aAq~Fi~~n~Lp-~~yl~qI~~FI~~N~ 110 (116)
T PF09070_consen 57 DYVFDVDIEDGGPPLKLPY--NK---GDNPYEAAQKFIERNNLP-QSYLDQIANFIIQNT 110 (116)
T ss_dssp SEEEEE--STTSS-EEEEE---T---TS-HHHHHHHHHHHHT---CCHHHHHHHHHHHHH
T ss_pred eEEEEEEecCCCcceeCCc--cC---CCCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcC
Confidence 3445555555555554333 33 568999999999999999 699999999886543
No 12
>PF09021 HutP: HutP; InterPro: IPR015111 The HutP protein family regulates the expression of Bacillus 'hut' structural genes by an anti-termination complex, which recognises three UAG triplet units, separated by four non-conserved nucleotides on the RNA terminator region. L-histidine and Mg2+ ions are also required. These proteins exhibit the structural elements of alpha/beta proteins, arranged in the order: alpha-alpha-beta-alpha-alpha-beta-beta-beta in the primary structure, and the four antiparallel beta-strands form a beta-sheet in the order beta1-beta2-beta3-beta4, with two alpha-helices each on the front (alpha1 and alpha2) and at the back (alpha3 and alpha4) of the beta-sheet []. ; PDB: 2ZH0_J 1WPS_A 1VEA_B 1WPV_B 1WRQ_A 1WRN_A 1WPT_A 1WPU_B 3BOY_B 1WMQ_B ....
Probab=32.46 E-value=45 Score=28.03 Aligned_cols=11 Identities=27% Similarity=0.459 Sum_probs=9.0
Q ss_pred ccccceEee-ec
Q 025626 201 RYNSSVVRY-VW 211 (250)
Q Consensus 201 ~~~~~~~r~-~~ 211 (250)
|.|++++|+ ||
T Consensus 94 g~Ki~Ivr~~ew 105 (130)
T PF09021_consen 94 GGKIGIVRDGEW 105 (130)
T ss_dssp EEEEEEEEG--E
T ss_pred ceEEEEEecCCE
Confidence 889999998 77
No 13
>PF02022 Integrase_Zn: Integrase Zinc binding domain The structure of the N-terminal zinc binding domain.; InterPro: IPR003308 Retroviral integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains: an N-terminal zinc binding domain, a central catalytic core and a C-terminal DNA-binding domain [, ]. Often found as part of the POL polyprotein.; GO: 0008270 zinc ion binding; PDB: 1E0E_A 3F9K_F 1E27_C 1K6Y_B 1WJD_A 1WJB_A 1WJF_A 1WJE_B 3HPG_B 3HPH_C ....
Probab=30.66 E-value=58 Score=22.07 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=15.5
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 025626 56 AKRTVRDLKLPPQFITQIAQS 76 (250)
Q Consensus 56 A~~lc~DL~LP~~f~~~Ia~s 76 (250)
++.|..+++||.....+|+++
T Consensus 12 ~~~L~~~f~ip~~vAk~IV~~ 32 (40)
T PF02022_consen 12 AKALRHKFGIPRLVAKQIVNQ 32 (40)
T ss_dssp HHHHHHHHT--HHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHH
Confidence 578999999999888888764
No 14
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=30.07 E-value=50 Score=24.89 Aligned_cols=38 Identities=3% Similarity=0.026 Sum_probs=29.0
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHH
Q 025626 40 AFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSI 77 (250)
Q Consensus 40 ~FlWNlnE~~iTPE~FA~~lc~DL~LP~~f~~~Ia~sI 77 (250)
.|+|.+=|...|+++-++.||+.|+.+......+.+-+
T Consensus 34 ~~Iw~lldg~~tv~eI~~~L~~~Y~~~e~~~~dV~~fL 71 (81)
T TIGR03859 34 GEILELCDGKRSLAEIIQELAQRFPAAEEIEDDVIAFL 71 (81)
T ss_pred HHHHHHccCCCcHHHHHHHHHHHcCChhhHHHHHHHHH
Confidence 58899877788999999999999999444444444433
No 15
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=28.75 E-value=1.3e+02 Score=28.09 Aligned_cols=20 Identities=20% Similarity=0.581 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHhhcCCC
Q 025626 122 NYESDPEEFARTFCNDMGIE 141 (250)
Q Consensus 122 ~~~~tPE~FA~~lc~DLgL~ 141 (250)
-+..+|+.|...+|..|+|+
T Consensus 214 ~~~~~p~~~i~r~~~~L~L~ 233 (310)
T PRK00423 214 LPPTDPIDYVPRFASELGLS 233 (310)
T ss_pred CCCCCHHHHHHHHHHHcCCC
Confidence 45678999999999999998
No 16
>PRK05325 hypothetical protein; Provisional
Probab=28.64 E-value=39 Score=33.46 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCh
Q 025626 47 DPDSEVVVFAKRTVRDLKLPP 67 (250)
Q Consensus 47 E~~iTPE~FA~~lc~DL~LP~ 67 (250)
+-.+|.|+|++.|-+||+||.
T Consensus 99 e~els~eE~~~~lfEdLeLPn 119 (401)
T PRK05325 99 EFEISLEELLDLLFEDLELPN 119 (401)
T ss_pred EEEecHHHHHHHHHhhcCCCC
Confidence 346899999999999999974
No 17
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=28.55 E-value=38 Score=33.24 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHcCCCh
Q 025626 48 PDSEVVVFAKRTVRDLKLPP 67 (250)
Q Consensus 48 ~~iTPE~FA~~lc~DL~LP~ 67 (250)
-.+|.|+|++.|-+||.||.
T Consensus 112 ~e~s~eE~~~~lfEdLeLPn 131 (371)
T TIGR02877 112 TEVTLEELFELLFEDLELPN 131 (371)
T ss_pred EEecHHHHHHHHHhhccCCC
Confidence 45799999999999999985
No 18
>PTZ00202 tuzin; Provisional
Probab=28.00 E-value=1.1e+02 Score=31.55 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=30.7
Q ss_pred CHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHH
Q 025626 126 DPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIAIQ 163 (250)
Q Consensus 126 tPE~FA~~lc~DLgL~~~ef~~aIA~sIrEQL~e~k~~ 163 (250)
+|++|-+.++.+||+++.+....+..+|++.|++.+.+
T Consensus 321 g~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e 358 (550)
T PTZ00202 321 GTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKM 358 (550)
T ss_pred CHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 79999999999999984344467888888888777654
No 19
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=26.30 E-value=2.9e+02 Score=22.45 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=34.3
Q ss_pred EEeCCeEE-E--EeeeecCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHH
Q 025626 105 LRVNHTLI-K--DHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIA 161 (250)
Q Consensus 105 I~i~~~~l-~--D~FeWdL~~~~~tPE~FA~~lc~DLgL~~~ef~~aIA~sIrEQL~e~k 161 (250)
+++++..+ . |-|..|..+ +++| .|+.+++..|+.-.+-+=.|.+-+|+.-.++.
T Consensus 2 ~~i~g~~i~~D~eGfL~~~~d--W~ee-vA~~lA~~egI~Ltd~HW~vI~flR~~y~~~~ 58 (109)
T PF04358_consen 2 IEINGKTIETDEEGFLVDPED--WNEE-VAEALAKEEGIELTDEHWEVIRFLRDYYQEYG 58 (109)
T ss_dssp EEETTEEEEEETTSEESSGGG----HH-HHHHHHHCTT-S--HHHHHHHHHHHHHHHHHS
T ss_pred eeECCEEeeeCCCcCcCChHh--CCHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 45666654 3 347777653 5554 99999999888733555578888888776664
No 20
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=24.35 E-value=1.6e+02 Score=25.27 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHH
Q 025626 124 ESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQL 157 (250)
Q Consensus 124 ~~tPE~FA~~lc~DLgL~~~ef~~aIA~sIrEQL 157 (250)
..+|+.|.+.+ .+|||| .|...+++....+.-
T Consensus 59 n~~~~~l~~eL-~~lglp-~e~~~~l~~~~~~~~ 90 (174)
T cd04752 59 NVDGESLSSEL-QQLGLP-KEHATSLCRSYEEKQ 90 (174)
T ss_pred CCCHHHHHHHH-HHcCCC-HHHHHHHHHHHHHHH
Confidence 47899999988 899999 588887777554443
No 21
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=23.50 E-value=2.3e+02 Score=23.08 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=35.9
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcCCC
Q 025626 130 FARTFCNDMGIEDPEVGPAVAFAIREQLYEIAIQSVASAREIKISKKGRR 179 (250)
Q Consensus 130 FA~~lc~DLgL~~~ef~~aIA~sIrEQL~e~k~~~v~~~~e~~~s~~g~~ 179 (250)
+...+.+++|.. ++.+.+.+++-|.+++|..++...+ ...++..+|
T Consensus 6 ~v~~iLk~~Gv~--~~~~~v~~~Lle~~~ry~~~il~dA--~~~a~hA~r 51 (117)
T cd07979 6 VIAAILKSMGIT--EYEPRVINQLLEFAYRYTTDVLDDA--KVYSEHAGK 51 (117)
T ss_pred HHHHHHHHCCCC--ccCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCC
Confidence 667788889886 8999999999999999999887666 334555443
No 22
>PF13058 DUF3920: Protein of unknown function (DUF3920)
Probab=23.31 E-value=39 Score=28.31 Aligned_cols=35 Identities=11% Similarity=0.288 Sum_probs=30.4
Q ss_pred eccccchHHHHHHhhhhhceeeeeeEEEeecCccc
Q 025626 210 VWSFHTEFSWKITSLLKHEYFINYNLILVGSGKFH 244 (250)
Q Consensus 210 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (250)
-|+.|+|++.+|-.-+.|-+--.-|+.+||+-++.
T Consensus 69 ~we~y~qvlktllhefrh~mQh~~~vlyvg~e~yE 103 (126)
T PF13058_consen 69 MWEEYEQVLKTLLHEFRHAMQHEKDVLYVGKEPYE 103 (126)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhhheeeeccchHH
Confidence 79999999999999888888777789999987653
No 23
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=23.01 E-value=1.2e+02 Score=24.36 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=20.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCh
Q 025626 45 PSDPDSEVVVFAKRTVRDLKLPP 67 (250)
Q Consensus 45 lnE~~iTPE~FA~~lc~DL~LP~ 67 (250)
+-+..+++|+|...|=+.++.|+
T Consensus 35 L~~~~i~~EeF~~~Lq~~lns~~ 57 (92)
T smart00549 35 LVNGTITAEEFTSRLQEALNSPL 57 (92)
T ss_pred HHhCCCCHHHHHHHHHHHHcCCC
Confidence 34678999999999999999986
No 24
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=22.39 E-value=1.7e+02 Score=27.37 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=25.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 025626 45 PSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQL 81 (250)
Q Consensus 45 lnE~~iTPE~FA~~lc~DL~LP~~f~~~Ia~sI~eQl 81 (250)
++-+.++|+.|..++|..|+||.... ..|..|-++.
T Consensus 212 ~~~~~~~p~~~i~r~~~~L~L~~~v~-~~A~~i~~~a 247 (310)
T PRK00423 212 LKLPPTDPIDYVPRFASELGLSGEVQ-KKAIEILQKA 247 (310)
T ss_pred CCCCCCCHHHHHHHHHHHcCCCHHHH-HHHHHHHHHH
Confidence 34566789999999999999997543 3344444333
No 25
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=22.17 E-value=2.1e+02 Score=21.64 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHH
Q 025626 124 ESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIAIQS 164 (250)
Q Consensus 124 ~~tPE~FA~~lc~DLgL~~~ef~~aIA~sIrEQL~e~k~~~ 164 (250)
...-=+.+..+..|||++ .-.-+++...-+|+..+..+.
T Consensus 41 ~l~rl~~~~rL~~Dl~in--~~gi~lil~LLd~i~~L~~el 79 (84)
T PF13591_consen 41 DLARLRRIRRLHRDLGIN--LEGIALILDLLDRIEQLRREL 79 (84)
T ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 344445778899999998 334566777778888887775
No 26
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=20.39 E-value=84 Score=22.05 Aligned_cols=28 Identities=18% Similarity=0.509 Sum_probs=20.6
Q ss_pred EeeeecCCCCCCCHHHHHHHHHhhcCCC
Q 025626 114 DHFLWDLNNYESDPEEFARTFCNDMGIE 141 (250)
Q Consensus 114 D~FeWdL~~~~~tPE~FA~~lc~DLgL~ 141 (250)
-.|.|++.+...|.++-++.+|+..+.+
T Consensus 19 a~~Iw~~~~g~~t~~ei~~~l~~~y~~~ 46 (68)
T PF05402_consen 19 AAFIWELLDGPRTVEEIVDALAEEYDVD 46 (68)
T ss_dssp HHHHHHH--SSS-HHHHHHHHHHHTT--
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHcCCC
Confidence 3588999988899999999999999887
Done!