Query 025626
Match_columns 250
No_of_seqs 172 out of 382
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 14:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k89_A PLA2P, PLAP, phospholip 92.0 0.34 1.2E-05 36.6 6.0 39 41-82 33-71 (80)
2 2lru_A Serine/threonine-protei 80.8 0.37 1.3E-05 37.8 0.0 62 99-163 24-94 (98)
3 3pst_A Protein DOA1; protein d 70.8 6.9 0.00024 37.4 6.2 39 41-82 112-150 (425)
4 3l3f_X Protein DOA1, DOA1/UFD3 70.8 7.4 0.00025 36.3 6.3 38 41-81 49-86 (362)
5 2lru_A Serine/threonine-protei 71.9 1 3.4E-05 35.3 0.0 49 35-85 40-92 (98)
6 2k89_A PLA2P, PLAP, phospholip 45.2 33 0.0011 25.6 4.8 33 124-157 38-70 (80)
7 2h7b_A Core-binding factor, ML 40.8 30 0.001 27.3 4.1 41 45-85 38-83 (105)
8 2zkq_c 40S ribosomal protein S 27.6 79 0.0027 28.0 5.1 92 126-235 65-172 (243)
9 2p6v_A Transcription initiatio 24.2 89 0.0031 24.9 4.3 23 45-67 53-75 (114)
10 2qm4_A Non-homologous END-join 23.2 65 0.0022 28.2 3.7 109 26-138 27-141 (235)
11 1ais_B TFB TFIIB, protein (tra 20.0 99 0.0034 24.9 4.0 17 125-141 106-122 (200)
No 1
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=92.03 E-value=0.34 Score=36.60 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=34.8
Q ss_pred EEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 025626 41 FTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLT 82 (250)
Q Consensus 41 FlWNlnE~~iTPE~FA~~lc~DL~LP~~f~~~Ia~sI~eQl~ 82 (250)
.-.|.+| .|-.=|+.+|++.+||..|.++|++-|.+...
T Consensus 33 LpyN~~d---nP~~aAqkFi~~n~Lp~~yldqI~~FI~~N~~ 71 (80)
T 2k89_A 33 LPYNTSD---DPWLTAYNFLQKNDLNPMFLDQVAKFIIDNTK 71 (80)
T ss_dssp EEECTTS---CHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHS
T ss_pred cCccCCC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 4578888 79999999999999999999999999998654
No 2
>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}
Probab=80.82 E-value=0.37 Score=37.76 Aligned_cols=62 Identities=26% Similarity=0.305 Sum_probs=47.2
Q ss_pred eeeEEEEEeCCe-----EEE----EeeeecCCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHH
Q 025626 99 VPIKLDLRVNHT-----LIK----DHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIAIQ 163 (250)
Q Consensus 99 VpIkLdI~i~~~-----~l~----D~FeWdL~~~~~tPE~FA~~lc~DLgL~~~ef~~aIA~sIrEQL~e~k~~ 163 (250)
+.|.|-+++... +.+ =+|..||.. .+|+++|..+|..+.|+ .+=.+.||..|+.++..+++.
T Consensus 24 ~~i~L~LRi~Dpkk~~gk~KeNeaIeF~Fdle~--Dta~eVA~EMVe~~~l~-e~D~~~VaklI~~~v~~~~r~ 94 (98)
T 2lru_A 24 IAIKLWLRIEDIKKLKGKYKDNEAIEFSFDLER--DVPEDVAQEMVESGYVC-EGDHKTMAKAIKDRVSLIKRK 94 (98)
Confidence 566666665432 333 268888864 79999999999999999 477789999999998766553
No 3
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=70.82 E-value=6.9 Score=37.43 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=34.2
Q ss_pred EEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 025626 41 FTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLT 82 (250)
Q Consensus 41 FlWNlnE~~iTPE~FA~~lc~DL~LP~~f~~~Ia~sI~eQl~ 82 (250)
.-.|.+| .|-.=|+.+|.+.+||..|.+||++-|.+-..
T Consensus 112 LpyN~~~---np~~~A~~Fi~~~~L~~~y~~qi~~FI~~N~~ 150 (425)
T 3pst_A 112 LPINVSD---NPYTAADNFLARYELPMSYRDQVVQLILKNTN 150 (425)
T ss_dssp EEECTTC---CHHHHHHHHHHHHTCCGGGHHHHHHHHHHHC-
T ss_pred CCccCCC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 5678888 79999999999999999999999999987443
No 4
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=70.78 E-value=7.4 Score=36.33 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=34.4
Q ss_pred EEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 025626 41 FTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQL 81 (250)
Q Consensus 41 FlWNlnE~~iTPE~FA~~lc~DL~LP~~f~~~Ia~sI~eQl 81 (250)
.-.|.+| .|-.=|+.+|++.+||..|.+||++-|.+..
T Consensus 49 lpyN~~~---np~~~A~~F~~~~~l~~~y~~~i~~fi~~n~ 86 (362)
T 3l3f_X 49 LPINVSD---NPYTAADNFLARYELPMSYRDQVVQFILKNT 86 (362)
T ss_dssp EEECTTS---CHHHHHHHHHHHTTCCGGGHHHHHHHHHHHC
T ss_pred CCCcCCC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 5678888 7999999999999999999999999998744
No 5
>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}
Probab=71.93 E-value=1 Score=35.29 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=40.5
Q ss_pred cEEEE----EEEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhh
Q 025626 35 QRYKD----AFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTEFR 85 (250)
Q Consensus 35 ~klrD----~FlWNlnE~~iTPE~FA~~lc~DL~LP~~f~~~Ia~sI~eQl~ey~ 85 (250)
.|.|| .|..|+... |++.+|+.||+.+.+|.+=.+.|+..|+.|+.-+.
T Consensus 40 gk~KeNeaIeF~Fdle~D--ta~eVA~EMVe~~~l~e~D~~~VaklI~~~v~~~~ 92 (98)
T 2lru_A 40 GKYKDNEAIEFSFDLERD--VPEDVAQEMVESGYVCEGDHKTMAKAIKDRVSLIK 92 (98)
Confidence 45664 478887733 89999999999999999888899999999987654
No 6
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=45.24 E-value=33 Score=25.65 Aligned_cols=33 Identities=24% Similarity=0.178 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHH
Q 025626 124 ESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQL 157 (250)
Q Consensus 124 ~~tPE~FA~~lc~DLgL~~~ef~~aIA~sIrEQL 157 (250)
.-+|-.=|+.+|.+-+|| ..|..+||.-|....
T Consensus 38 ~dnP~~aAqkFi~~n~Lp-~~yldqI~~FI~~N~ 70 (80)
T 2k89_A 38 SDDPWLTAYNFLQKNDLN-PMFLDQVAKFIIDNT 70 (80)
T ss_dssp TSCHHHHHHHHHHHHTCC-TTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhC
Confidence 458999999999999999 699999999887654
No 7
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=40.81 E-value=30 Score=27.26 Aligned_cols=41 Identities=12% Similarity=0.164 Sum_probs=30.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHHHHhh
Q 025626 45 PSDPDSEVVVFAKRTVRDLKLPP-----QFITQIAQSIQTQLTEFR 85 (250)
Q Consensus 45 lnE~~iTPE~FA~~lc~DL~LP~-----~f~~~Ia~sI~eQl~ey~ 85 (250)
+-+..|+||+|...|=+.++.|+ .|...=.-+.|.++..-+
T Consensus 38 Ll~~~i~~EeFt~~Lq~~lns~pqP~lvPFLK~sLp~Lr~~l~~~a 83 (105)
T 2h7b_A 38 LVNSTLTIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHAA 83 (105)
T ss_dssp HHTSSCCHHHHHHHHHHHSSSSCCSSSHHHHHTTHHHHHHHHHHHG
T ss_pred HHhCCCCHHHHHHHHHHHhcCCCCcchhHHHHHhHHHHHHHHHHHH
Confidence 34678999999999999999986 455554556666665443
No 8
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=27.63 E-value=79 Score=28.00 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=55.2
Q ss_pred CHHHHHHHHHhhcCCCCC-------------ChHHHHHHHHHHHHHH---HHHHHHHhHHHhhhhhcCCCCccccccccc
Q 025626 126 DPEEFARTFCNDMGIEDP-------------EVGPAVAFAIREQLYE---IAIQSVASAREIKISKKGRRGAEHAISSKG 189 (250)
Q Consensus 126 tPE~FA~~lc~DLgL~~~-------------ef~~aIA~sIrEQL~e---~k~~~v~~~~e~~~s~~g~~~~~~~~~~~~ 189 (250)
.-++....+-..+|+++. --...+|..|..||++ +++-+..+++- .-+.|-.|....-+++-
T Consensus 65 ~I~~L~~~L~k~~~~~~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRa~k~ai~~--am~aGakGikI~iSGRL 142 (243)
T 2zkq_c 65 RIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF--IMESGAKGCEVVVSGKL 142 (243)
T ss_dssp HHHHHHHHHHHHSCTTTCCCCCEEEECSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHH--HHHSSCSEEEEEECSSG
T ss_pred HHHHHHHHHHHHhCcCCceEEEEEEEecCcccCHHHHHHHHHHHHHcchhHHHHHHHHHHH--HHhcCCceEEEEEecch
Confidence 455566666666654311 1245799999999976 34444333321 22446667777777776
Q ss_pred CCcchhhhhhhccccceEeeeccccchHHHHHHhhhhhceeeeeeE
Q 025626 190 GGNALDLMKLFRYNSSVVRYVWSFHTEFSWKITSLLKHEYFINYNL 235 (250)
Q Consensus 190 g~~~~~~~~~~~~~~~~~r~~~~~~~p~~~~~~~~~~~~~~~~~~~ 235 (250)
++. . .|.||...+-+ |.++---...|+|..
T Consensus 143 ~Ga-i------------ARtE~~~eG~v---LhTg~plra~IDYa~ 172 (243)
T 2zkq_c 143 RGQ-R------------AKSMKFVDGLM---IHSGDPVNYYVDTAV 172 (243)
T ss_dssp GGS-S------------CCCBCCEEESS---HHHHSSTTCCEEEEE
T ss_pred hhH-h------------hhhhhhcCcEE---eecCchhhhceeEEE
Confidence 654 5 79999999987 444322234566653
No 9
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=24.21 E-value=89 Score=24.85 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCh
Q 025626 45 PSDPDSEVVVFAKRTVRDLKLPP 67 (250)
Q Consensus 45 lnE~~iTPE~FA~~lc~DL~LP~ 67 (250)
+-+..|+||+|...|=+.++.|+
T Consensus 53 Ll~~~i~~EeFt~~Lq~~lns~p 75 (114)
T 2p6v_A 53 LLDGXIEAEDFTSRLYRELNSSP 75 (114)
T ss_dssp HHTTSSCHHHHHHHHHHHTTCCC
T ss_pred HHHccCCHHHHHHHHHHHHcCCC
Confidence 44678999999999999999986
No 10
>2qm4_A Non-homologous END-joining factor 1; XRCC4 like factor, homodimer, beta-sandwich, coiled-coil, recombination; HET: MSE; 2.30A {Homo sapiens} PDB: 3sr2_C* 2r9a_A 3q4f_E* 3rwr_D*
Probab=23.17 E-value=65 Score=28.21 Aligned_cols=109 Identities=10% Similarity=0.200 Sum_probs=63.3
Q ss_pred eEEEeeeCCcEEEEEEEecCCCCCCCHHHHHHHHHHHc---CCCh-HHHHHHHHHHHHHHHHhhcccCCCC--CCCceee
Q 025626 26 IRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDL---KLPP-QFITQIAQSIQTQLTEFRSYEGQDM--YTAEKIV 99 (250)
Q Consensus 26 IRLdie~dg~klrD~FlWNlnE~~iTPE~FA~~lc~DL---~LP~-~f~~~Ia~sI~eQl~ey~~~~~~~~--~~~e~~V 99 (250)
|+..+.-+|+.+.=+=+=|+=-..++.+.+-++.-++- .+|+ .+..++...++..|.+=..-....+ ..++.-+
T Consensus 27 vk~~ft~~sY~l~lTDL~~vW~E~l~~~~I~~Rak~lN~rl~i~~s~~~~~l~~ll~~aL~~~~~~~~~sls~~~~~~~L 106 (235)
T 2qm4_A 27 AKVFITKQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAAFLCHLDNLLRPLLKDAAHPSEATFSCDCVADAL 106 (235)
T ss_dssp EEEEEETTEEEEEEECSSCEEEEEECHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHCSCSCCCCEEEEEEETTEE
T ss_pred EEEEecCCcEEEEEEccchhceeecCHHHHHHHHHHhCcCCCCChhHhHHHHHHHHHHHHhcCCCCcceEEEecCCCCcE
Confidence 67777777777642111122234456666665544443 4566 5677777777764422111000000 0011234
Q ss_pred eeEEEEEeCCeEEEEeeeecCCCCCCCHHHHHHHHHhhc
Q 025626 100 PIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDM 138 (250)
Q Consensus 100 pIkLdI~i~~~~l~D~FeWdL~~~~~tPE~FA~~lc~DL 138 (250)
.+++.+.+.+ + .|.|+++-...+|..|++.++..|
T Consensus 107 ~L~~~~~L~~--l--PlkW~fhL~~~~~s~l~~~LilPL 141 (235)
T 2qm4_A 107 ILRVRSELSG--L--PFYWNFHCMLASPSLVSQHLIRPL 141 (235)
T ss_dssp EEEEEEEETT--E--EEEEEEEEEECCHHHHHHHTHHHH
T ss_pred EEEEEEECCC--C--CEEEEEEEeeCCHHHHHHHHHHHH
Confidence 5677777877 5 999999998999999999888754
No 11
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=20.04 E-value=99 Score=24.93 Aligned_cols=17 Identities=18% Similarity=0.786 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHhhcCCC
Q 025626 125 SDPEEFARTFCNDMGIE 141 (250)
Q Consensus 125 ~tPE~FA~~lc~DLgL~ 141 (250)
.+|+.|-..+|..|||+
T Consensus 106 ~~p~~~i~r~~~~L~l~ 122 (200)
T 1ais_B 106 VKPTDYVNKFADELGLS 122 (200)
T ss_dssp CCGGGGHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHcCCC
Confidence 78999999999999998
Done!