Query 025626
Match_columns 250
No_of_seqs 172 out of 382
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 14:12:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025626.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025626hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1aisb2 a.74.1.2 (B:1206-1300) 70.2 1.7 0.00012 30.5 3.3 17 125-141 1-17 (95)
2 d1aisb2 a.74.1.2 (B:1206-1300) 68.0 1.8 0.00013 30.3 3.0 35 50-85 1-35 (95)
3 d1vola2 a.74.1.2 (A:208-316) T 51.5 5.1 0.00037 28.6 3.1 35 49-84 1-35 (109)
4 d1vola2 a.74.1.2 (A:208-316) T 43.4 7.4 0.00054 27.6 2.9 17 125-141 2-18 (109)
5 d2pp4a1 a.277.1.1 (A:119-225) 28.9 46 0.0034 24.3 5.3 43 120-165 37-79 (107)
6 d2p6va1 a.277.1.1 (A:582-678) 26.4 22 0.0016 25.8 3.0 24 44-67 44-67 (97)
7 d1e0ea_ a.4.10.1 (A:) N-termin 26.3 29 0.0021 21.7 3.2 21 56-76 19-39 (46)
8 d1k6ya1 a.4.10.1 (A:1-46) N-te 22.5 33 0.0024 21.5 2.9 21 56-76 19-39 (46)
9 d1f46a_ d.129.4.1 (A:) Cell-di 21.7 21 0.0016 26.5 2.2 33 54-86 98-136 (139)
10 d2gqba1 a.282.1.1 (A:1-130) Hy 21.6 6.5 0.00048 30.1 -0.9 17 193-209 70-87 (130)
11 d1t33a1 a.4.1.9 (A:1-88) Putat 20.8 8.5 0.00062 26.0 -0.3 43 184-226 36-86 (88)
No 1
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=70.20 E-value=1.7 Score=30.45 Aligned_cols=17 Identities=18% Similarity=0.786 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHhhcCCC
Q 025626 125 SDPEEFARTFCNDMGIE 141 (250)
Q Consensus 125 ~tPE~FA~~lc~DLgL~ 141 (250)
+.|++|-..+|..||||
T Consensus 1 i~P~d~I~R~~~~L~L~ 17 (95)
T d1aisb2 1 VKPTDYVNKFADELGLS 17 (95)
T ss_dssp CCGGGGHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHcCcC
Confidence 46999999999999998
No 2
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=68.02 E-value=1.8 Score=30.32 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhh
Q 025626 50 SEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTEFR 85 (250)
Q Consensus 50 iTPE~FA~~lc~DL~LP~~f~~~Ia~sI~eQl~ey~ 85 (250)
|.|++|..++|..|+||..+.. .+..|-.++.+..
T Consensus 1 i~P~d~I~R~~~~L~L~~~i~~-~A~~i~~~~~~~~ 35 (95)
T d1aisb2 1 VKPTDYVNKFADELGLSEKVRR-RAIEILDEAYKRG 35 (95)
T ss_dssp CCGGGGHHHHHHHHTCCHHHHH-HHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCcCHHHHH-HHHHHHHHHHHcC
Confidence 5899999999999999986543 3444545555543
No 3
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.46 E-value=5.1 Score=28.57 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 025626 49 DSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTEF 84 (250)
Q Consensus 49 ~iTPE~FA~~lc~DL~LP~~f~~~Ia~sI~eQl~ey 84 (250)
.|||..|..++|..|+||.... .-+..|-+++.+.
T Consensus 1 ~i~~~d~i~Rf~s~L~L~~~i~-~~A~~i~~~~~~~ 35 (109)
T d1vola2 1 LITTGDFMSRFCSNLCLPKQVQ-MAATHIARKAVEL 35 (109)
T ss_dssp CCCGGGTHHHHHHHHTCCHHHH-HHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCcCHHHH-HHHHHHHHHHHHc
Confidence 4799999999999999998543 3444555545444
No 4
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.45 E-value=7.4 Score=27.62 Aligned_cols=17 Identities=18% Similarity=0.604 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHhhcCCC
Q 025626 125 SDPEEFARTFCNDMGIE 141 (250)
Q Consensus 125 ~tPE~FA~~lc~DLgL~ 141 (250)
++|.+|-..+|..||||
T Consensus 2 i~~~d~i~Rf~s~L~L~ 18 (109)
T d1vola2 2 ITTGDFMSRFCSNLCLP 18 (109)
T ss_dssp CCGGGTHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHcCcC
Confidence 68999999999999998
No 5
>d2pp4a1 a.277.1.1 (A:119-225) ETO {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.93 E-value=46 Score=24.32 Aligned_cols=43 Identities=16% Similarity=0.078 Sum_probs=27.6
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 025626 120 LNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIAIQSV 165 (250)
Q Consensus 120 L~~~~~tPE~FA~~lc~DLgL~~~ef~~aIA~sIrEQL~e~k~~~v 165 (250)
|-+..++||+|...|=+.+..|.+.| ++--++..|--++.++.
T Consensus 37 L~~~~i~~EeF~~~Lq~~lns~pqP~---lvPFLK~~LplLr~~l~ 79 (107)
T d2pp4a1 37 LVNSTLTIEEFHSKLQEATNFPLRPF---VIPFLKANLPLLQRELL 79 (107)
T ss_dssp HHTTCSCHHHHHHHHHHHHCCCCCTT---HHHHHHHHHHHHHHHHH
T ss_pred HHhCCcCHHHHHHHHHHHhcCCCCCc---chhhHHHhhHHHHHHHH
Confidence 33457999999999999999986443 33333344434444443
No 6
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.39 E-value=22 Score=25.82 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.7
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCh
Q 025626 44 NPSDPDSEVVVFAKRTVRDLKLPP 67 (250)
Q Consensus 44 NlnE~~iTPE~FA~~lc~DL~LP~ 67 (250)
|+-+..++||+|...|=+.++.|+
T Consensus 44 ~L~~~~i~~EEF~~~Lq~~lns~p 67 (97)
T d2p6va1 44 NLLDGKIEAEDFTSRLYRELNSSP 67 (97)
T ss_dssp HHHTTSSCHHHHHHHHHHHTTCCC
T ss_pred HHHhCCcCHHHHHHHHHHHhcCCC
Confidence 344678999999999999999986
No 7
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=26.26 E-value=29 Score=21.72 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=17.9
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 025626 56 AKRTVRDLKLPPQFITQIAQS 76 (250)
Q Consensus 56 A~~lc~DL~LP~~f~~~Ia~s 76 (250)
+..|..+++||.....+|+++
T Consensus 19 ~~~L~~~F~lp~~vAr~IV~~ 39 (46)
T d1e0ea_ 19 VKELSHKFGIPNLVARQIVNS 39 (46)
T ss_dssp HHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 568999999999888888865
No 8
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=22.55 E-value=33 Score=21.47 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=17.7
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 025626 56 AKRTVRDLKLPPQFITQIAQS 76 (250)
Q Consensus 56 A~~lc~DL~LP~~f~~~Ia~s 76 (250)
+..|+..++||.....+|+++
T Consensus 19 ~~~L~~~F~ip~~vAr~IV~~ 39 (46)
T d1k6ya1 19 WRAMASDFNLPPVVAKEIVAS 39 (46)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 578999999999888888764
No 9
>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.75 E-value=21 Score=26.49 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCCC---h---HHHHHHHHHHHHHHHHhhc
Q 025626 54 VFAKRTVRDLKLP---P---QFITQIAQSIQTQLTEFRS 86 (250)
Q Consensus 54 ~FA~~lc~DL~LP---~---~f~~~Ia~sI~eQl~ey~~ 86 (250)
.+|+.+|++|+-- . .+-.|-...||+||.+|..
T Consensus 98 ~~a~~la~~l~g~l~D~~r~~lt~q~i~~~R~~i~e~e~ 136 (139)
T d1f46a_ 98 QSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKD 136 (139)
T ss_dssp HHHHHHHHHHTCEEECTTSCBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999842 1 4667778899999999975
No 10
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=21.63 E-value=6.5 Score=30.14 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=15.4
Q ss_pred chhhhhhhccccceE-ee
Q 025626 193 ALDLMKLFRYNSSVV-RY 209 (250)
Q Consensus 193 ~~~~~~~~~~~~~~~-r~ 209 (250)
-+||||+.|..+|+- ||
T Consensus 70 IVDLmKlLgLDSSL~aRK 87 (130)
T d2gqba1 70 IVDLMKALDIDSSLSARK 87 (130)
T ss_dssp HHHHHHHTCCCCSHHHHH
T ss_pred HHHHHHHhcCcccHHHHH
Confidence 479999999999998 88
No 11
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=20.78 E-value=8.5 Score=25.98 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=32.7
Q ss_pred ccccccCCcchhhhhhhccccceEee--------eccccchHHHHHHhhhh
Q 025626 184 AISSKGGGNALDLMKLFRYNSSVVRY--------VWSFHTEFSWKITSLLK 226 (250)
Q Consensus 184 ~~~~~~g~~~~~~~~~~~~~~~~~r~--------~~~~~~p~~~~~~~~~~ 226 (250)
.-+.++|...+-+..+|++|-.++.. -++.+.|....+.++|.
T Consensus 36 ~Ia~~agvs~~~~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (88)
T d1t33a1 36 DIAALAGQNIAAITYYFGSKEDLYLACAQWIADFLGEKFRPHAEKAERLFS 86 (88)
T ss_dssp HHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHS
T ss_pred HHHHHhCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 57788999999999999999866544 45666777777766653
Done!