Query 025628
Match_columns 250
No_of_seqs 280 out of 1820
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:47:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0914 Thioredoxin-like prote 100.0 6.8E-66 1.5E-70 426.7 21.2 238 2-246 4-253 (265)
2 cd02962 TMX2 TMX2 family; comp 100.0 1.4E-32 3.1E-37 222.5 15.4 151 90-241 1-152 (152)
3 cd02954 DIM1 Dim1 family; Dim1 99.9 3.8E-23 8.2E-28 159.2 12.8 108 124-239 2-109 (114)
4 cd03006 PDI_a_EFP1_N PDIa fami 99.9 7.7E-22 1.7E-26 152.3 10.7 109 110-225 2-111 (113)
5 KOG0910 Thioredoxin-like prote 99.9 4.3E-22 9.4E-27 158.3 9.0 100 117-225 43-142 (150)
6 cd03065 PDI_b_Calsequestrin_N 99.8 6.3E-21 1.4E-25 148.5 9.1 107 110-226 2-114 (120)
7 PHA02278 thioredoxin-like prot 99.8 1.3E-20 2.8E-25 143.2 10.5 90 125-224 5-98 (103)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.1E-20 2.3E-25 142.4 8.7 98 118-225 2-99 (101)
9 cd02985 TRX_CDSP32 TRX family, 99.8 5.1E-20 1.1E-24 139.7 11.7 88 123-219 2-92 (103)
10 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 5.1E-20 1.1E-24 139.1 9.7 99 118-225 2-102 (104)
11 cd02957 Phd_like Phosducin (Ph 99.8 9.7E-20 2.1E-24 140.3 11.4 108 117-236 4-111 (113)
12 cd02963 TRX_DnaJ TRX domain, D 99.8 8.4E-20 1.8E-24 140.3 9.4 98 122-225 9-106 (111)
13 cd02956 ybbN ybbN protein fami 99.8 1.2E-19 2.5E-24 135.1 9.7 90 126-223 2-91 (96)
14 PF00085 Thioredoxin: Thioredo 99.8 1.9E-19 4.2E-24 134.5 11.0 99 119-226 1-99 (103)
15 COG3118 Thioredoxin domain-con 99.8 5.6E-20 1.2E-24 160.6 8.4 102 118-226 24-125 (304)
16 cd02989 Phd_like_TxnDC9 Phosdu 99.8 5.5E-19 1.2E-23 136.4 12.6 105 117-234 4-109 (113)
17 PTZ00443 Thioredoxin domain-co 99.8 3.3E-19 7.2E-24 152.9 11.7 122 99-227 7-135 (224)
18 cd02948 TRX_NDPK TRX domain, T 99.8 5.3E-19 1.1E-23 133.8 11.4 86 123-218 6-91 (102)
19 cd02999 PDI_a_ERp44_like PDIa 99.8 2.4E-19 5.1E-24 135.5 9.1 90 127-226 9-99 (100)
20 cd02996 PDI_a_ERp44 PDIa famil 99.8 2.4E-19 5.1E-24 136.7 9.1 100 118-226 2-107 (108)
21 cd02986 DLP Dim1 family, Dim1- 99.8 9.8E-19 2.1E-23 134.0 11.9 106 125-238 3-108 (114)
22 PRK09381 trxA thioredoxin; Pro 99.8 6.9E-19 1.5E-23 134.1 10.4 98 117-223 3-100 (109)
23 KOG0907 Thioredoxin [Posttrans 99.8 7.7E-19 1.7E-23 133.9 10.6 76 137-220 21-96 (106)
24 cd02994 PDI_a_TMX PDIa family, 99.8 4.7E-19 1E-23 133.1 9.3 94 118-223 2-95 (101)
25 PLN00410 U5 snRNP protein, DIM 99.8 1.4E-18 3.1E-23 138.7 12.5 105 123-237 10-116 (142)
26 cd02965 HyaE HyaE family; HyaE 99.8 8E-19 1.7E-23 134.4 10.3 94 118-221 11-106 (111)
27 cd03005 PDI_a_ERp46 PDIa famil 99.8 7.5E-19 1.6E-23 131.7 9.9 97 119-225 2-100 (102)
28 cd02984 TRX_PICOT TRX domain, 99.8 6.7E-18 1.5E-22 125.6 11.2 88 124-219 2-89 (97)
29 PRK10996 thioredoxin 2; Provis 99.8 4.6E-18 1E-22 135.9 10.7 95 119-223 37-131 (139)
30 cd02987 Phd_like_Phd Phosducin 99.8 8.4E-18 1.8E-22 139.4 12.6 110 115-236 60-170 (175)
31 cd02993 PDI_a_APS_reductase PD 99.7 6.8E-18 1.5E-22 129.1 9.5 94 118-217 2-98 (109)
32 cd03002 PDI_a_MPD1_like PDI fa 99.7 4.9E-18 1.1E-22 129.0 8.6 83 119-210 2-86 (109)
33 cd02997 PDI_a_PDIR PDIa family 99.7 8.5E-18 1.8E-22 126.2 9.7 98 119-225 2-102 (104)
34 cd03001 PDI_a_P5 PDIa family, 99.7 1.2E-17 2.7E-22 125.2 9.2 99 119-226 2-101 (103)
35 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 1.4E-17 3E-22 124.9 9.0 99 119-226 2-103 (104)
36 KOG0908 Thioredoxin-like prote 99.7 8.1E-18 1.8E-22 143.1 7.9 94 119-221 3-97 (288)
37 PTZ00051 thioredoxin; Provisio 99.7 7.4E-17 1.6E-21 120.3 10.6 85 123-218 7-91 (98)
38 cd02998 PDI_a_ERp38 PDIa famil 99.7 5.1E-17 1.1E-21 121.9 8.8 92 119-218 2-96 (105)
39 TIGR01068 thioredoxin thioredo 99.7 8.9E-17 1.9E-21 119.5 9.9 92 123-223 2-93 (101)
40 cd02949 TRX_NTR TRX domain, no 99.7 1.1E-16 2.3E-21 119.8 10.1 88 127-223 5-92 (97)
41 cd02988 Phd_like_VIAF Phosduci 99.7 1.8E-16 3.8E-21 133.3 11.8 107 115-235 80-186 (192)
42 TIGR01126 pdi_dom protein disu 99.7 8.7E-17 1.9E-21 120.0 8.6 93 122-223 1-94 (102)
43 cd02953 DsbDgamma DsbD gamma f 99.7 3.8E-17 8.3E-22 123.5 6.6 88 125-222 2-98 (104)
44 cd02950 TxlA TRX-like protein 99.7 1.3E-16 2.8E-21 128.0 9.0 88 125-222 11-101 (142)
45 cd03000 PDI_a_TMX3 PDIa family 99.7 1.2E-16 2.6E-21 121.0 7.9 87 125-222 7-95 (104)
46 cd02961 PDI_a_family Protein D 99.7 2.2E-16 4.7E-21 116.5 9.1 94 121-223 2-97 (101)
47 TIGR01295 PedC_BrcD bacterioci 99.7 3.3E-16 7.2E-21 122.5 10.3 91 119-217 8-109 (122)
48 cd02992 PDI_a_QSOX PDIa family 99.7 5.9E-16 1.3E-20 119.6 9.9 93 118-219 2-98 (114)
49 cd02975 PfPDO_like_N Pyrococcu 99.7 4.5E-16 9.7E-21 120.1 8.4 82 137-226 22-105 (113)
50 PTZ00102 disulphide isomerase; 99.6 2.1E-15 4.7E-20 142.2 12.6 100 117-226 32-133 (477)
51 cd02947 TRX_family TRX family; 99.6 7.9E-15 1.7E-19 106.0 9.9 87 126-223 2-88 (93)
52 TIGR00424 APS_reduc 5'-adenyly 99.6 3E-15 6.5E-20 140.3 9.4 87 117-209 351-439 (463)
53 PRK00293 dipZ thiol:disulfide 99.6 7.8E-14 1.7E-18 134.9 19.5 93 119-219 454-558 (571)
54 cd02952 TRP14_like Human TRX-r 99.6 6E-15 1.3E-19 114.7 9.5 79 123-209 8-101 (119)
55 cd02951 SoxW SoxW family; SoxW 99.6 5E-15 1.1E-19 115.6 8.4 88 125-222 4-110 (125)
56 COG4232 Thiol:disulfide interc 99.6 1.9E-14 4.1E-19 136.0 13.8 96 120-222 457-559 (569)
57 KOG0190 Protein disulfide isom 99.6 2.7E-15 5.8E-20 140.4 7.1 103 115-226 23-127 (493)
58 cd02959 ERp19 Endoplasmic reti 99.6 1.5E-14 3.3E-19 112.3 10.2 102 127-236 12-115 (117)
59 PLN02309 5'-adenylylsulfate re 99.6 1.1E-14 2.4E-19 136.5 10.6 88 116-209 344-433 (457)
60 TIGR01130 ER_PDI_fam protein d 99.6 7.9E-15 1.7E-19 137.2 9.5 100 118-226 2-104 (462)
61 cd03007 PDI_a_ERp29_N PDIa fam 99.5 7.8E-15 1.7E-19 113.4 6.1 85 119-217 3-101 (116)
62 KOG4277 Uncharacterized conser 99.5 5E-15 1.1E-19 129.4 4.7 101 114-226 25-127 (468)
63 PTZ00102 disulphide isomerase; 99.5 3E-14 6.5E-19 134.4 9.0 103 116-226 356-460 (477)
64 PTZ00062 glutaredoxin; Provisi 99.5 9.2E-14 2E-18 117.6 9.8 79 123-219 5-83 (204)
65 PHA02125 thioredoxin-like prot 99.4 5.6E-13 1.2E-17 95.2 8.8 64 141-220 2-65 (75)
66 TIGR02187 GlrX_arch Glutaredox 99.4 3.8E-13 8.3E-18 114.9 8.4 81 140-226 22-106 (215)
67 TIGR00411 redox_disulf_1 small 99.4 4.1E-13 8.9E-18 96.6 7.3 71 141-222 3-73 (82)
68 cd02982 PDI_b'_family Protein 99.4 3.7E-13 8.1E-18 100.9 6.6 68 138-212 13-84 (103)
69 KOG0190 Protein disulfide isom 99.4 4.6E-13 9.9E-18 125.5 6.8 91 117-217 366-459 (493)
70 cd03008 TryX_like_RdCVF Trypar 99.4 1.9E-12 4.2E-17 104.1 9.4 72 136-213 24-128 (146)
71 cd02955 SSP411 TRX domain, SSP 99.4 4.1E-12 8.9E-17 99.6 10.7 89 124-222 5-105 (124)
72 TIGR00412 redox_disulf_2 small 99.4 1.7E-12 3.6E-17 93.1 7.1 62 142-217 3-64 (76)
73 PRK14018 trifunctional thiored 99.4 2.1E-12 4.6E-17 122.7 9.7 85 136-226 55-168 (521)
74 cd03009 TryX_like_TryX_NRX Try 99.4 3.7E-12 8E-17 100.0 9.0 72 136-213 17-115 (131)
75 cd02964 TryX_like_family Trypa 99.4 4.1E-12 8.8E-17 100.2 9.0 73 136-214 16-116 (132)
76 TIGR01130 ER_PDI_fam protein d 99.3 1.7E-12 3.7E-17 121.4 7.9 93 117-219 346-442 (462)
77 cd03010 TlpA_like_DsbE TlpA-li 99.3 1.1E-11 2.5E-16 96.6 9.7 77 136-221 24-124 (127)
78 TIGR02187 GlrX_arch Glutaredox 99.3 7.5E-12 1.6E-16 106.9 8.8 92 121-225 119-210 (215)
79 TIGR02738 TrbB type-F conjugat 99.3 5.1E-11 1.1E-15 96.7 12.9 72 139-219 52-141 (153)
80 PF13905 Thioredoxin_8: Thiore 99.3 2.2E-11 4.9E-16 90.0 9.6 66 138-209 2-93 (95)
81 TIGR02740 TraF-like TraF-like 99.3 1E-11 2.2E-16 109.8 8.6 79 135-222 164-255 (271)
82 cd02973 TRX_GRX_like Thioredox 99.3 2.4E-11 5.3E-16 84.3 8.2 59 141-209 3-61 (67)
83 cd02966 TlpA_like_family TlpA- 99.3 3E-11 6.5E-16 90.5 9.2 74 137-216 19-116 (116)
84 KOG0912 Thiol-disulfide isomer 99.3 9.3E-12 2E-16 109.1 6.9 82 123-213 2-87 (375)
85 PF13098 Thioredoxin_2: Thiore 99.2 6.1E-12 1.3E-16 95.8 4.3 81 135-222 3-107 (112)
86 PRK03147 thiol-disulfide oxido 99.2 1.8E-10 3.9E-15 94.2 12.6 78 136-219 60-160 (173)
87 PRK15412 thiol:disulfide inter 99.2 3.7E-11 8E-16 100.3 8.3 76 136-221 67-166 (185)
88 cd03012 TlpA_like_DipZ_like Tl 99.2 9.6E-11 2.1E-15 91.5 9.8 76 136-217 22-125 (126)
89 PLN02919 haloacid dehalogenase 99.2 4.7E-11 1E-15 122.8 9.8 81 136-222 419-527 (1057)
90 cd03011 TlpA_like_ScsD_MtbDsbE 99.2 6.7E-11 1.5E-15 91.4 7.7 77 138-223 21-118 (123)
91 KOG0191 Thioredoxin/protein di 99.2 3.8E-11 8.2E-16 111.0 6.3 86 123-217 35-120 (383)
92 TIGR00385 dsbE periplasmic pro 99.2 2.6E-10 5.6E-15 94.1 10.0 74 136-219 62-159 (173)
93 PF08534 Redoxin: Redoxin; In 99.1 5.3E-10 1.2E-14 89.1 10.6 84 136-219 27-136 (146)
94 cd02960 AGR Anterior Gradient 99.1 3.3E-10 7.1E-15 89.2 8.3 87 133-229 21-111 (130)
95 cd03026 AhpF_NTD_C TRX-GRX-lik 99.1 6.3E-10 1.4E-14 82.2 9.3 64 140-213 15-78 (89)
96 PRK11509 hydrogenase-1 operon 99.1 4.9E-10 1.1E-14 88.4 8.3 98 119-225 19-118 (132)
97 KOG1731 FAD-dependent sulfhydr 99.1 1.2E-10 2.6E-15 109.6 4.6 89 112-208 34-126 (606)
98 PTZ00056 glutathione peroxidas 99.1 2.4E-10 5.2E-15 96.7 6.1 44 136-179 38-81 (199)
99 cd02967 mauD Methylamine utili 99.1 1.1E-09 2.4E-14 83.4 9.2 55 137-192 21-78 (114)
100 KOG0191 Thioredoxin/protein di 99.0 2.1E-10 4.6E-15 106.0 5.5 100 119-226 146-247 (383)
101 PRK13728 conjugal transfer pro 99.0 1.6E-09 3.6E-14 89.9 8.8 72 141-221 73-161 (181)
102 TIGR01626 ytfJ_HI0045 conserve 99.0 4.7E-09 1E-13 87.5 9.6 74 136-219 58-168 (184)
103 cd00340 GSH_Peroxidase Glutath 98.9 3.2E-09 7E-14 85.6 7.0 42 137-179 22-63 (152)
104 PLN02399 phospholipid hydroper 98.9 8.7E-09 1.9E-13 89.3 9.7 43 137-179 99-141 (236)
105 TIGR02661 MauD methylamine deh 98.9 2.6E-08 5.5E-13 83.5 12.2 69 136-213 73-162 (189)
106 COG0526 TrxA Thiol-disulfide i 98.9 5.8E-09 1.2E-13 77.1 7.3 73 137-216 32-107 (127)
107 PF13899 Thioredoxin_7: Thiore 98.9 4.5E-09 9.8E-14 76.1 6.1 69 127-206 10-81 (82)
108 cd02958 UAS UAS family; UAS is 98.9 1.2E-08 2.6E-13 78.4 8.4 80 135-221 15-101 (114)
109 TIGR02540 gpx7 putative glutat 98.8 8.2E-09 1.8E-13 83.3 7.0 43 136-178 21-63 (153)
110 cd02969 PRX_like1 Peroxiredoxi 98.8 5.1E-08 1.1E-12 80.0 10.9 72 136-213 24-125 (171)
111 PLN02412 probable glutathione 98.8 1.4E-08 3E-13 83.5 7.3 43 137-179 29-71 (167)
112 cd01659 TRX_superfamily Thiore 98.7 5.6E-08 1.2E-12 63.9 7.2 60 141-208 1-63 (69)
113 cd03017 PRX_BCP Peroxiredoxin 98.7 7.7E-08 1.7E-12 75.8 8.9 87 137-223 23-135 (140)
114 KOG0913 Thiol-disulfide isomer 98.7 2.6E-09 5.6E-14 90.8 0.4 99 116-226 23-121 (248)
115 PTZ00256 glutathione peroxidas 98.7 5.7E-08 1.2E-12 81.0 7.8 40 140-179 44-83 (183)
116 KOG1672 ATP binding protein [P 98.7 6.1E-08 1.3E-12 80.2 7.4 99 114-223 63-162 (211)
117 PF02114 Phosducin: Phosducin; 98.7 1.1E-07 2.4E-12 83.8 9.2 97 117-222 125-222 (265)
118 PF00578 AhpC-TSA: AhpC/TSA fa 98.7 2E-07 4.2E-12 71.7 9.2 72 136-207 24-117 (124)
119 KOG2501 Thioredoxin, nucleored 98.6 7.6E-08 1.6E-12 77.6 6.3 72 136-213 32-131 (157)
120 TIGR02200 GlrX_actino Glutared 98.6 1.5E-07 3.3E-12 66.4 7.1 58 141-212 2-64 (77)
121 smart00594 UAS UAS domain. 98.6 1.9E-07 4.2E-12 72.7 8.3 76 137-219 27-113 (122)
122 cd02970 PRX_like2 Peroxiredoxi 98.6 3.6E-07 7.7E-12 72.4 9.8 43 139-181 26-68 (149)
123 cd03018 PRX_AhpE_like Peroxire 98.6 8E-07 1.7E-11 70.7 10.5 81 138-218 29-134 (149)
124 TIGR02196 GlrX_YruB Glutaredox 98.5 4.5E-07 9.7E-12 62.9 7.4 52 141-205 2-57 (74)
125 cd03015 PRX_Typ2cys Peroxiredo 98.5 1E-06 2.2E-11 72.5 9.9 82 137-218 29-140 (173)
126 TIGR03137 AhpC peroxiredoxin. 98.5 1.1E-06 2.3E-11 73.6 10.0 81 137-217 31-138 (187)
127 COG2143 Thioredoxin-related pr 98.5 2.6E-06 5.7E-11 68.4 11.3 84 133-223 38-141 (182)
128 PF14595 Thioredoxin_9: Thiore 98.5 4.4E-07 9.6E-12 71.6 6.9 77 137-218 41-118 (129)
129 PRK09437 bcp thioredoxin-depen 98.5 9.3E-07 2E-11 71.1 8.8 84 137-220 30-142 (154)
130 cd03014 PRX_Atyp2cys Peroxired 98.5 2E-06 4.4E-11 68.1 10.6 80 137-218 26-130 (143)
131 cd02971 PRX_family Peroxiredox 98.4 1.5E-06 3.2E-11 68.3 9.0 83 137-219 22-131 (140)
132 KOG3414 Component of the U4/U6 98.4 3E-06 6.5E-11 65.6 10.2 109 123-239 10-118 (142)
133 KOG3425 Uncharacterized conser 98.4 9.3E-07 2E-11 67.8 7.1 81 125-207 13-104 (128)
134 PRK00522 tpx lipid hydroperoxi 98.4 3.6E-06 7.8E-11 69.1 10.3 43 136-180 43-86 (167)
135 TIGR02180 GRX_euk Glutaredoxin 98.3 2E-06 4.3E-11 61.6 6.9 60 141-211 1-65 (84)
136 cd02968 SCO SCO (an acronym fo 98.3 2.9E-06 6.2E-11 66.9 7.5 45 136-180 21-69 (142)
137 PF13728 TraF: F plasmid trans 98.3 6.9E-06 1.5E-10 70.3 10.3 67 134-209 117-194 (215)
138 PRK10382 alkyl hydroperoxide r 98.2 8.9E-06 1.9E-10 68.2 10.0 80 137-216 31-137 (187)
139 PF06110 DUF953: Eukaryotic pr 98.2 1.2E-05 2.5E-10 62.5 9.8 77 125-208 6-99 (119)
140 PRK15000 peroxidase; Provision 98.2 7.8E-06 1.7E-10 69.2 9.6 44 136-179 33-77 (200)
141 PRK13190 putative peroxiredoxi 98.2 1.5E-05 3.3E-10 67.5 9.6 42 138-179 28-70 (202)
142 KOG0911 Glutaredoxin-related p 98.2 7.7E-07 1.7E-11 75.4 1.6 81 136-224 16-96 (227)
143 PF02966 DIM1: Mitosis protein 98.1 7E-05 1.5E-09 58.7 12.2 107 124-238 8-114 (133)
144 PF03190 Thioredox_DsbH: Prote 98.1 2.2E-05 4.8E-10 64.2 8.9 86 122-217 25-122 (163)
145 cd03016 PRX_1cys Peroxiredoxin 98.0 3.2E-05 7E-10 65.5 9.1 41 140-180 29-69 (203)
146 PRK11200 grxA glutaredoxin 1; 98.0 3E-05 6.5E-10 56.3 7.7 61 141-211 3-69 (85)
147 PTZ00137 2-Cys peroxiredoxin; 98.0 4.6E-05 9.9E-10 67.1 9.9 43 138-180 99-142 (261)
148 cd02976 NrdH NrdH-redoxin (Nrd 98.0 5E-05 1.1E-09 52.3 7.9 51 141-204 2-56 (73)
149 TIGR02739 TraF type-F conjugat 97.9 6.3E-05 1.4E-09 65.9 9.5 64 136-208 149-223 (256)
150 PRK13599 putative peroxiredoxi 97.9 5.5E-05 1.2E-09 64.7 9.0 41 140-180 32-72 (215)
151 PF13192 Thioredoxin_3: Thiore 97.9 8.4E-05 1.8E-09 52.9 8.0 60 143-216 4-63 (76)
152 PRK13191 putative peroxiredoxi 97.9 8.5E-05 1.8E-09 63.6 9.5 41 140-180 37-77 (215)
153 PRK10606 btuE putative glutath 97.9 2.7E-05 5.8E-10 65.1 6.2 43 136-179 24-66 (183)
154 PRK13189 peroxiredoxin; Provis 97.9 9.4E-05 2E-09 63.6 9.3 41 140-180 39-79 (222)
155 PF01216 Calsequestrin: Calseq 97.8 8E-05 1.7E-09 67.1 7.6 107 110-227 27-140 (383)
156 PTZ00253 tryparedoxin peroxida 97.8 0.00023 4.9E-09 60.0 9.8 44 137-180 36-80 (199)
157 cd03419 GRX_GRXh_1_2_like Glut 97.7 0.00015 3.2E-09 51.7 7.0 59 141-212 2-65 (82)
158 PF11009 DUF2847: Protein of u 97.7 0.00035 7.5E-09 53.0 9.1 86 123-215 6-95 (105)
159 cd02066 GRX_family Glutaredoxi 97.7 0.00021 4.6E-09 48.8 7.3 58 141-213 2-63 (72)
160 PRK13703 conjugal pilus assemb 97.7 0.00019 4.2E-09 62.6 8.6 63 137-208 143-216 (248)
161 PF00462 Glutaredoxin: Glutare 97.6 0.0004 8.7E-09 46.7 7.8 54 141-209 1-58 (60)
162 TIGR02183 GRXA Glutaredoxin, G 97.5 0.00036 7.9E-09 50.8 6.9 60 141-210 2-67 (86)
163 PF07449 HyaE: Hydrogenase-1 e 97.4 0.00043 9.4E-09 52.7 6.2 91 118-219 10-103 (107)
164 PRK10329 glutaredoxin-like pro 97.4 0.00099 2.1E-08 48.1 7.5 54 141-204 3-56 (81)
165 cd02991 UAS_ETEA UAS family, E 97.4 0.00074 1.6E-08 52.2 6.9 86 127-222 6-104 (116)
166 PF13848 Thioredoxin_6: Thiore 97.3 0.0015 3.2E-08 53.3 9.0 81 119-206 79-159 (184)
167 TIGR02190 GlrX-dom Glutaredoxi 97.3 0.0015 3.3E-08 46.6 7.7 56 140-210 9-67 (79)
168 TIGR03143 AhpF_homolog putativ 97.3 0.00099 2.1E-08 64.7 8.7 59 141-209 480-538 (555)
169 TIGR02194 GlrX_NrdH Glutaredox 97.3 0.0011 2.3E-08 46.5 6.5 60 142-218 2-64 (72)
170 TIGR02181 GRX_bact Glutaredoxi 97.2 0.0014 3.1E-08 46.4 6.8 55 142-211 2-60 (79)
171 cd03418 GRX_GRXb_1_3_like Glut 97.2 0.0029 6.2E-08 44.2 8.0 57 141-211 2-62 (75)
172 PRK15317 alkyl hydroperoxide r 97.2 0.0019 4.1E-08 62.2 9.3 78 120-209 101-178 (517)
173 cd03027 GRX_DEP Glutaredoxin ( 97.2 0.0032 6.9E-08 44.0 7.9 57 141-212 3-63 (73)
174 TIGR02189 GlrX-like_plant Glut 97.1 0.0022 4.7E-08 48.1 6.8 56 141-211 10-72 (99)
175 KOG2603 Oligosaccharyltransfer 97.1 0.0045 9.8E-08 55.2 9.6 90 115-210 38-138 (331)
176 PF05768 DUF836: Glutaredoxin- 97.0 0.0014 3.1E-08 47.2 4.5 79 141-237 2-80 (81)
177 cd03020 DsbA_DsbC_DsbG DsbA fa 96.9 0.0023 5E-08 53.7 6.3 73 137-219 77-189 (197)
178 PHA03050 glutaredoxin; Provisi 96.9 0.0038 8.2E-08 47.6 6.6 59 141-211 15-80 (108)
179 cd03029 GRX_hybridPRX5 Glutare 96.8 0.009 1.9E-07 41.6 7.7 56 141-211 3-61 (72)
180 KOG3170 Conserved phosducin-li 96.8 0.0037 8.1E-08 52.5 6.5 94 117-221 91-184 (240)
181 PRK10877 protein disulfide iso 96.8 0.0034 7.3E-08 54.3 6.3 74 136-223 106-223 (232)
182 TIGR03140 AhpF alkyl hydropero 96.8 0.0073 1.6E-07 58.1 9.1 75 120-204 102-176 (515)
183 KOG3171 Conserved phosducin-li 96.7 0.0044 9.5E-08 52.6 6.0 90 118-217 139-230 (273)
184 cd02981 PDI_b_family Protein D 96.6 0.0066 1.4E-07 44.5 6.1 67 125-208 8-74 (97)
185 cd02972 DsbA_family DsbA famil 96.6 0.0083 1.8E-07 43.0 6.5 59 141-206 1-91 (98)
186 COG0695 GrxC Glutaredoxin and 96.6 0.0089 1.9E-07 43.0 6.3 60 141-209 3-62 (80)
187 TIGR03143 AhpF_homolog putativ 96.5 0.016 3.4E-07 56.4 9.5 92 127-227 357-450 (555)
188 TIGR00365 monothiol glutaredox 96.5 0.035 7.6E-07 41.3 9.3 54 147-211 25-78 (97)
189 PRK10638 glutaredoxin 3; Provi 96.5 0.02 4.4E-07 41.1 7.7 61 141-212 4-64 (83)
190 PRK11657 dsbG disulfide isomer 96.0 0.048 1E-06 47.8 8.9 78 137-223 117-244 (251)
191 cd03028 GRX_PICOT_like Glutare 95.8 0.047 1E-06 39.9 7.0 53 147-210 21-73 (90)
192 cd03072 PDI_b'_ERp44 PDIb' fam 95.8 0.034 7.4E-07 42.4 6.4 79 119-207 1-82 (111)
193 cd03023 DsbA_Com1_like DsbA fa 95.8 0.028 6.1E-07 44.1 6.2 40 137-178 5-44 (154)
194 COG1225 Bcp Peroxiredoxin [Pos 95.6 0.11 2.3E-06 42.3 9.0 83 139-221 32-143 (157)
195 PF07912 ERp29_N: ERp29, N-ter 95.5 0.16 3.5E-06 39.6 8.9 88 120-216 7-102 (126)
196 PRK12759 bifunctional gluaredo 95.4 0.063 1.4E-06 50.4 7.8 38 141-185 4-41 (410)
197 cd02978 KaiB_like KaiB-like fa 95.1 0.099 2.1E-06 36.9 6.1 59 140-204 3-61 (72)
198 TIGR02654 circ_KaiB circadian 94.8 0.11 2.4E-06 38.0 6.0 74 138-218 3-76 (87)
199 cd02983 P5_C P5 family, C-term 94.8 0.066 1.4E-06 42.1 5.3 84 119-209 4-92 (130)
200 PRK10824 glutaredoxin-4; Provi 94.8 0.15 3.2E-06 39.4 7.0 71 126-212 7-82 (115)
201 PRK09301 circadian clock prote 94.5 0.14 3.1E-06 38.6 6.2 76 136-218 4-79 (103)
202 COG1331 Highly conserved prote 94.0 0.18 4E-06 49.6 7.5 93 123-222 32-133 (667)
203 KOG1752 Glutaredoxin and relat 93.9 0.29 6.3E-06 37.1 6.8 72 127-211 7-78 (104)
204 PF13462 Thioredoxin_4: Thiore 93.8 0.22 4.8E-06 39.5 6.5 43 137-179 12-55 (162)
205 cd03013 PRX5_like Peroxiredoxi 93.5 0.13 2.8E-06 41.5 4.6 41 139-179 32-74 (155)
206 cd03019 DsbA_DsbA DsbA family, 93.4 0.15 3.2E-06 41.3 5.0 40 138-178 16-55 (178)
207 PTZ00062 glutaredoxin; Provisi 92.9 0.61 1.3E-05 39.6 8.0 54 147-211 126-179 (204)
208 cd03073 PDI_b'_ERp72_ERp57 PDI 92.5 0.34 7.5E-06 36.9 5.5 55 150-207 31-86 (111)
209 PRK10954 periplasmic protein d 92.4 0.2 4.3E-06 42.3 4.4 38 140-178 40-80 (207)
210 KOG2640 Thioredoxin [Function 91.8 0.057 1.2E-06 48.3 0.4 71 127-205 67-137 (319)
211 cd03060 GST_N_Omega_like GST_N 91.1 1.1 2.3E-05 30.7 6.3 55 143-209 3-58 (71)
212 PF07689 KaiB: KaiB domain; I 90.4 0.11 2.4E-06 37.6 0.7 54 144-203 3-56 (82)
213 cd03031 GRX_GRX_like Glutaredo 89.6 1.4 3E-05 35.4 6.6 61 142-211 3-71 (147)
214 cd02977 ArsC_family Arsenate R 89.4 0.57 1.2E-05 35.0 4.0 35 142-183 2-36 (105)
215 cd03067 PDI_b_PDIR_N PDIb fami 89.0 3.6 7.9E-05 31.1 7.8 78 125-209 10-90 (112)
216 PF13848 Thioredoxin_6: Thiore 88.0 1.3 2.7E-05 35.8 5.5 76 154-240 7-94 (184)
217 TIGR01617 arsC_related transcr 86.2 1.6 3.6E-05 33.3 4.9 35 143-184 3-37 (117)
218 cd03059 GST_N_SspA GST_N famil 85.8 3.5 7.6E-05 27.9 6.0 52 142-203 2-53 (73)
219 cd03037 GST_N_GRX2 GST_N famil 85.2 2.4 5.2E-05 28.8 4.9 22 143-164 3-24 (71)
220 cd03036 ArsC_like Arsenate Red 84.9 1.7 3.7E-05 33.0 4.4 35 142-183 2-36 (111)
221 cd02974 AhpF_NTD_N Alkyl hydro 84.7 7.3 0.00016 28.8 7.6 74 126-220 9-83 (94)
222 cd03066 PDI_b_Calsequestrin_mi 84.4 4.1 8.8E-05 30.1 6.2 71 120-207 3-75 (102)
223 cd03051 GST_N_GTT2_like GST_N 82.5 4.1 8.9E-05 27.4 5.2 51 143-204 3-57 (74)
224 cd03041 GST_N_2GST_N GST_N fam 82.3 6.6 0.00014 27.2 6.3 53 142-204 3-56 (77)
225 PF00837 T4_deiodinase: Iodoth 82.3 1.8 4E-05 37.5 3.9 58 118-179 83-143 (237)
226 PRK01655 spxA transcriptional 81.8 2.9 6.4E-05 32.7 4.7 36 141-183 2-37 (131)
227 COG4545 Glutaredoxin-related p 81.7 2.3 5E-05 30.2 3.6 57 142-212 5-77 (85)
228 cd00570 GST_N_family Glutathio 81.1 3.7 8E-05 26.6 4.5 51 143-204 3-55 (71)
229 PF13417 GST_N_3: Glutathione 80.6 9.3 0.0002 26.3 6.5 55 144-211 2-57 (75)
230 COG0450 AhpC Peroxiredoxin [Po 79.4 1.5 3.2E-05 36.9 2.4 96 138-239 34-141 (194)
231 cd03045 GST_N_Delta_Epsilon GS 79.2 9.1 0.0002 25.8 6.1 50 143-203 3-56 (74)
232 cd03035 ArsC_Yffb Arsenate Red 78.5 3.3 7.2E-05 31.1 3.9 34 142-182 2-35 (105)
233 cd03032 ArsC_Spx Arsenate Redu 78.2 6.2 0.00013 30.0 5.4 34 142-182 3-36 (115)
234 PHA03075 glutaredoxin-like pro 77.8 4.1 8.9E-05 31.4 4.1 28 140-167 4-31 (123)
235 PRK12559 transcriptional regul 74.1 6.2 0.00013 30.9 4.5 35 141-182 2-36 (131)
236 PF06053 DUF929: Domain of unk 73.9 19 0.00042 31.5 7.8 33 136-168 57-89 (249)
237 cd03040 GST_N_mPGES2 GST_N fam 73.8 6.8 0.00015 26.9 4.2 23 142-164 3-25 (77)
238 PF02630 SCO1-SenC: SCO1/SenC; 71.4 13 0.00029 30.3 6.0 44 136-179 51-97 (174)
239 PRK15317 alkyl hydroperoxide r 69.8 22 0.00049 34.1 8.1 82 126-228 9-91 (517)
240 COG3019 Predicted metal-bindin 66.9 13 0.00029 29.6 4.8 62 140-212 27-88 (149)
241 PRK13344 spxA transcriptional 65.8 9.8 0.00021 29.9 4.0 34 142-182 3-36 (132)
242 cd03069 PDI_b_ERp57 PDIb famil 65.3 28 0.00061 25.7 6.3 70 120-207 3-73 (104)
243 PF13743 Thioredoxin_5: Thiore 65.1 13 0.00028 30.5 4.8 35 143-178 2-36 (176)
244 cd03055 GST_N_Omega GST_N fami 63.9 24 0.00053 25.1 5.5 53 141-204 19-72 (89)
245 TIGR03140 AhpF alkyl hydropero 63.7 37 0.0008 32.7 8.3 83 125-227 8-91 (515)
246 cd03052 GST_N_GDAP1 GST_N fami 63.5 35 0.00076 23.4 6.1 58 142-209 2-60 (73)
247 COG1999 Uncharacterized protei 59.5 1.1E+02 0.0023 25.9 10.4 56 135-190 65-127 (207)
248 cd03056 GST_N_4 GST_N family, 59.1 49 0.0011 21.8 6.2 31 143-178 3-33 (73)
249 cd03030 GRX_SH3BGR Glutaredoxi 56.7 54 0.0012 24.0 6.3 66 144-211 4-71 (92)
250 cd03038 GST_N_etherase_LigE GS 54.3 23 0.00049 24.8 3.9 50 146-203 13-62 (84)
251 PF09673 TrbC_Ftype: Type-F co 50.8 28 0.00061 26.5 4.1 26 176-207 55-80 (113)
252 PF13743 Thioredoxin_5: Thiore 50.5 13 0.00029 30.5 2.4 20 181-206 136-155 (176)
253 cd03074 PDI_b'_Calsequestrin_C 47.7 1.1E+02 0.0025 23.4 6.8 72 120-192 4-80 (120)
254 KOG2507 Ubiquitin regulatory p 46.3 88 0.0019 29.7 7.2 88 128-221 9-101 (506)
255 COG1651 DsbG Protein-disulfide 44.7 43 0.00094 28.4 4.9 36 138-173 85-120 (244)
256 PF04592 SelP_N: Selenoprotein 43.2 37 0.00081 29.5 4.1 47 134-180 23-72 (238)
257 cd03061 GST_N_CLIC GST_N famil 42.7 77 0.0017 23.2 5.2 51 147-209 20-70 (91)
258 PRK09481 sspA stringent starva 42.4 97 0.0021 25.6 6.6 61 140-212 10-70 (211)
259 cd03053 GST_N_Phi GST_N family 41.6 1.1E+02 0.0023 20.5 6.4 32 143-179 4-35 (76)
260 TIGR02742 TrbC_Ftype type-F co 39.3 34 0.00074 26.9 3.1 27 177-209 56-82 (130)
261 cd03068 PDI_b_ERp72 PDIb famil 39.1 1.6E+02 0.0035 21.9 7.9 72 120-207 3-75 (107)
262 cd03054 GST_N_Metaxin GST_N fa 38.3 1.2E+02 0.0026 20.2 6.0 17 146-162 13-29 (72)
263 KOG0855 Alkyl hydroperoxide re 37.8 20 0.00042 29.7 1.5 91 139-238 92-191 (211)
264 PF04134 DUF393: Protein of un 37.2 75 0.0016 23.5 4.6 59 144-209 2-61 (114)
265 PF01323 DSBA: DSBA-like thior 37.0 43 0.00094 26.9 3.5 29 181-219 156-184 (193)
266 KOG0852 Alkyl hydroperoxide re 35.9 53 0.0011 27.4 3.7 47 133-179 29-76 (196)
267 cd03033 ArsC_15kD Arsenate Red 35.6 65 0.0014 24.4 4.0 34 142-182 3-36 (113)
268 COG4587 ABC-type uncharacteriz 34.7 2.6E+02 0.0056 24.7 7.9 38 45-82 115-152 (268)
269 KOG0854 Alkyl hydroperoxide re 33.9 42 0.00091 28.0 2.8 70 140-212 34-111 (224)
270 cd03049 GST_N_3 GST_N family, 31.3 1.1E+02 0.0024 20.3 4.4 19 143-161 3-21 (73)
271 KOG1651 Glutathione peroxidase 31.0 2.5E+02 0.0055 23.1 6.9 45 135-179 32-76 (171)
272 PF14851 FAM176: FAM176 family 31.0 1.5E+02 0.0033 24.0 5.6 40 69-108 3-47 (153)
273 cd03025 DsbA_FrnE_like DsbA fa 30.8 65 0.0014 26.0 3.6 27 141-167 3-29 (193)
274 PHA02726 hypothetical protein; 30.6 98 0.0021 22.6 3.9 18 13-30 4-21 (94)
275 PF01773 Nucleos_tra2_N: Na+ d 30.3 1.4E+02 0.0031 20.9 4.8 34 49-82 4-37 (75)
276 PF00255 GSHPx: Glutathione pe 30.1 1.5E+02 0.0034 22.3 5.3 47 133-180 17-63 (108)
277 cd03034 ArsC_ArsC Arsenate Red 29.1 87 0.0019 23.5 3.8 34 142-182 2-35 (112)
278 cd03058 GST_N_Tau GST_N family 29.0 1.8E+02 0.0039 19.4 6.1 52 143-203 3-54 (74)
279 cd03025 DsbA_FrnE_like DsbA fa 28.8 51 0.0011 26.6 2.6 24 180-209 157-180 (193)
280 PF09822 ABC_transp_aux: ABC-t 28.6 3.8E+02 0.0083 23.1 10.9 72 118-192 8-88 (271)
281 cd03076 GST_N_Pi GST_N family, 28.3 1.7E+02 0.0038 19.5 5.0 55 143-209 4-58 (73)
282 PF06123 CreD: Inner membrane 28.3 5.3E+02 0.011 24.6 11.2 29 2-30 316-346 (430)
283 TIGR00014 arsC arsenate reduct 27.5 96 0.0021 23.4 3.8 34 142-182 2-35 (114)
284 PF11085 YqhR: Conserved membr 26.3 3.7E+02 0.008 22.2 7.1 37 90-126 97-133 (173)
285 PF01323 DSBA: DSBA-like thior 24.8 1.7E+02 0.0036 23.4 5.0 39 141-179 2-40 (193)
286 PF03960 ArsC: ArsC family; I 24.4 1.8E+02 0.0039 21.5 4.7 32 144-182 1-32 (110)
287 PRK10954 periplasmic protein d 24.3 44 0.00096 27.9 1.5 23 182-212 157-179 (207)
288 PRK15201 fimbriae regulatory p 23.6 1.3E+02 0.0029 25.2 4.1 59 18-76 104-174 (198)
289 KOG2792 Putative cytochrome C 23.2 1.8E+02 0.0039 25.8 5.0 71 108-181 113-189 (280)
290 PF04908 SH3BGR: SH3-binding, 23.0 2.7E+02 0.0059 20.7 5.3 74 142-216 3-82 (99)
291 cd03019 DsbA_DsbA DsbA family, 22.7 54 0.0012 26.0 1.7 24 180-211 131-154 (178)
292 KOG0406 Glutathione S-transfer 22.6 5E+02 0.011 22.5 7.6 62 137-212 8-70 (231)
293 cd03050 GST_N_Theta GST_N fami 22.6 2.4E+02 0.0053 18.8 6.4 54 143-209 3-60 (76)
294 cd03044 GST_N_EF1Bgamma GST_N 22.6 2E+02 0.0043 19.3 4.4 50 144-204 4-56 (75)
295 PRK06569 F0F1 ATP synthase sub 22.5 1.5E+02 0.0033 24.0 4.2 47 1-51 1-48 (155)
296 PRK10387 glutaredoxin 2; Provi 22.3 2.1E+02 0.0045 23.3 5.2 21 144-164 4-24 (210)
297 KOG0914 Thioredoxin-like prote 22.2 5.3E+02 0.011 22.5 10.4 37 5-41 13-52 (265)
298 PRK13454 F0F1 ATP synthase sub 22.0 1.4E+02 0.0031 24.5 4.1 19 35-53 53-71 (181)
299 PHA02828 putative transmembran 21.3 1.8E+02 0.0038 21.4 3.8 18 13-30 4-21 (100)
300 PF04388 Hamartin: Hamartin pr 21.2 2.3E+02 0.0049 28.6 6.0 78 2-81 73-161 (668)
301 PF05988 DUF899: Bacterial pro 20.9 5.4E+02 0.012 22.0 8.1 90 127-219 60-176 (211)
302 PF06491 Disulph_isomer: Disul 20.5 4.4E+02 0.0095 20.9 10.1 97 119-222 18-119 (136)
303 cd02990 UAS_FAF1 UAS family, F 20.0 4.4E+02 0.0096 20.7 7.8 80 135-220 19-122 (136)
No 1
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-66 Score=426.66 Aligned_cols=238 Identities=33% Similarity=0.637 Sum_probs=231.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhccccChhhhhhh-----------hhhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 025628 2 EAMKQVVSETYYLSHFMAFFSYFVVRSSAAAVLSPHIIHHL-----------FYREIQAVLALSLLAAIKITREETWEEF 70 (250)
Q Consensus 2 ~~~~~~~~~~yy~~n~~~~~~y~~~r~~~~~~~~~~~~~~l-----------~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 70 (250)
|++-+++..|||++|.+++++|+++|+++ ++|+++ ||||+||+|++++++++|.||+.|||+|
T Consensus 4 kR~~~~~~~~~~~~n~llalafll~rs~~------pic~~l~~~~~~e~cdld~REveilmflliivaiK~rrs~twe~y 77 (265)
T KOG0914|consen 4 KRLGRILAMPYYVSNPLLALAFLLFRSTL------PICSSLFPYTGHEQCDLDSREVEILMFLLIIVAIKMRRSETWEAY 77 (265)
T ss_pred hHHHHHhhcchHHHhHHHHHHHHHHhhhh------hhhcccccccCCccccchHHHHHHHHHHHHHHHHHhhhHhHHHHH
Confidence 67889999999999999999999999999 788775 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccCChhh-HHHHHhcCCCCceEEEEEecCCC
Q 025628 71 IDNMLFYAKLLLVAIASIMDYHLALWFLVVFLVIYILTQQPVFQKLGISNKLTPLQ-LEALLTEGKTSRYWLVEFRAQCS 149 (250)
Q Consensus 71 l~~~~~~~k~~~~~~~~~~~~~~~~~y~i~~~v~~~~~~~p~~~~~~~v~~l~~~~-l~~~l~~~~k~~~vlV~FyA~WC 149 (250)
+.++|+|+|+|+.++++++|++.|+||+++|+++++++++|.|+||+.++++++.+ +++++ +++++++|+|+|+|.|+
T Consensus 78 vansfLysKia~~~l~~~~D~r~gl~fillc~vv~ml~~eP~y~gpe~ikyf~~~q~~deel-~rnk~t~WlIeFfa~ws 156 (265)
T KOG0914|consen 78 VANSFLYSKIANIILFLRADIRVGLWFILLCSVVYMLAPEPAYSGPETIKYFTNMQLEDEEL-DRNKRTYWLIEFFACWS 156 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCchheeeecchhhHHHHh-ccCCceEEEEEEEeecC
Confidence 99999999999999999999999999999999999999999999999999996655 77788 99999999999999999
Q ss_pred hhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeCCcCCCcccccccc
Q 025628 150 STCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFEEKFSHPHIT 229 (250)
Q Consensus 150 ~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g~~~~g~i~~~~~~ 229 (250)
|.|++.+|+|++++.+|+.++++|++||++++++.++||+|+.+++++|+||+++|++|+|+.|+|.++.+|+.++|.|+
T Consensus 157 ~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~~RrP~vd~~gra~s~~fS 236 (265)
T KOG0914|consen 157 PKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEVSRRPDVDVKGRAVSFPFS 236 (265)
T ss_pred hhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhhhcCccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccchhhhhh
Q 025628 230 KKLIAHHFQLDRLRIES 246 (250)
Q Consensus 230 ~~~i~~~f~l~~~~~~~ 246 (250)
++|++++||||++|.|+
T Consensus 237 eenv~~~F~Ln~Ly~e~ 253 (265)
T KOG0914|consen 237 EENVCQHFELNRLYLEA 253 (265)
T ss_pred HHHHHHHhcHHHHHHHH
Confidence 99999999999999998
No 2
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=100.00 E-value=1.4e-32 Score=222.51 Aligned_cols=151 Identities=38% Similarity=0.651 Sum_probs=140.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCccccccccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCC
Q 025628 90 DYHLALWFLVVFLVIYILTQQPVFQKLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK 169 (250)
Q Consensus 90 ~~~~~~~y~i~~~v~~~~~~~p~~~~~~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~ 169 (250)
|+++++||+++|+++++++++|.+.+++.+.+++++++++.+ ..+++++|+|+|||+||++|+.+.|.+++++++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~f~~~l-~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~ 79 (152)
T cd02962 1 DIRLGLLYLLLCIVVYLLAPQPLYMGPEHIKYFTPKTLEEEL-ERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN 79 (152)
T ss_pred CcEEehhHHHHHHHHHHHhCCCccCCCCccEEcCHHHHHHHH-HhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC
Confidence 568899999999999999999999999999999999999988 5556667999999999999999999999999999866
Q ss_pred CcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeCC-cCCCccccccccHHHHhhhcccch
Q 025628 170 NVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAF-GFEEKFSHPHITKKLIAHHFQLDR 241 (250)
Q Consensus 170 ~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g~-~~~g~i~~~~~~~~~i~~~f~l~~ 241 (250)
+++|++||++++++++++|+|.++..++++||+++|++|+++.|..|. +++|..+.+.+|.+|++++|+||+
T Consensus 80 ~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (152)
T cd02962 80 NLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVARRPYYNDSKGRAVPFTFSKENVIRHFDLDR 152 (152)
T ss_pred CeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEEEeccccCccccccccccHHHHHHhcccCC
Confidence 799999999999999999999998888999999999999999999995 578889999999999999999984
No 3
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.90 E-value=3.8e-23 Score=159.17 Aligned_cols=108 Identities=13% Similarity=0.220 Sum_probs=97.3
Q ss_pred hhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEE
Q 025628 124 PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 203 (250)
Q Consensus 124 ~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTli 203 (250)
++++++.+ ..+.+++++|+|||+||+||+.+.|.+++++.++++ .+.|++||++++++++++|+|.+ +||++
T Consensus 2 ~~~~~~~i-~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~~~~la~~~~V~~------iPTf~ 73 (114)
T cd02954 2 GWAVDQAI-LSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDEVPDFNKMYELYD------PPTVM 73 (114)
T ss_pred HHHHHHHH-hccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCCCHHHHHHcCCCC------CCEEE
Confidence 46788888 544555699999999999999999999999999975 68999999999999999999999 99999
Q ss_pred EEeCCeEEEeeeCCcCCCccccccccHHHHhhhccc
Q 025628 204 LFENNAEINRFPAFGFEEKFSHPHITKKLIAHHFQL 239 (250)
Q Consensus 204 lf~~G~e~~r~~g~~~~g~i~~~~~~~~~i~~~f~l 239 (250)
+|++|+++.+..|..++.++.-..-+++..+..+++
T Consensus 74 ~fk~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02954 74 FFFRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIET 109 (114)
T ss_pred EEECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHH
Confidence 999999999999999999998888888888877654
No 4
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.87 E-value=7.7e-22 Score=152.34 Aligned_cols=109 Identities=13% Similarity=0.066 Sum_probs=93.4
Q ss_pred CCccccccccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHH-HHh
Q 025628 110 QPVFQKLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAA-EKF 188 (250)
Q Consensus 110 ~p~~~~~~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la-~k~ 188 (250)
-|.|++.+.+..+++++|++...-.+..+.++|+|||+||++|+.+.|.++++++++++ .+.|++||++++++++ ++|
T Consensus 2 ~~~~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~~~~l~~~~~ 80 (113)
T cd03006 2 VPFFSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWWPQGKCRKQK 80 (113)
T ss_pred CCccCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCChHHHHHhc
Confidence 46778888899999999998741133444599999999999999999999999999976 6999999999999998 589
Q ss_pred CCccCCCCCCCCEEEEEeCCeEEEeeeCCcCCCcccc
Q 025628 189 GISLGGSMGQLPTYILFENNAEINRFPAFGFEEKFSH 225 (250)
Q Consensus 189 ~I~~~~~~~~lPTlilf~~G~e~~r~~g~~~~g~i~~ 225 (250)
+|.+ +||+++|++|++..++.|..+...+..
T Consensus 81 ~I~~------~PTl~lf~~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 81 HFFY------FPVIHLYYRSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred CCcc------cCEEEEEECCccceEEeCCCCHHHHHh
Confidence 9999 999999999999999888866655544
No 5
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.3e-22 Score=158.30 Aligned_cols=100 Identities=24% Similarity=0.392 Sum_probs=90.2
Q ss_pred cccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCC
Q 025628 117 GISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSM 196 (250)
Q Consensus 117 ~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~ 196 (250)
..+...+..++++.+.+.+.+ |+|+|||+||+||+.+.|.++++..+|++ .++|+++|+|++++++.+|+|..
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~P--VlVdF~A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~~~ela~~Y~I~a---- 115 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVP--VLVDFHAEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDEHPELAEDYEISA---- 115 (150)
T ss_pred ccccccCHHHHHHHHHccCCC--EEEEEecCcCccHhHhhHHHHHHHHhhcC-eEEEEEEccccccchHhhcceee----
Confidence 345667778898887577777 99999999999999999999999999976 99999999999999999999999
Q ss_pred CCCCEEEEEeCCeEEEeeeCCcCCCcccc
Q 025628 197 GQLPTYILFENNAEINRFPAFGFEEKFSH 225 (250)
Q Consensus 197 ~~lPTlilf~~G~e~~r~~g~~~~g~i~~ 225 (250)
+||+++|+||+++.|+.|..++.++.+
T Consensus 116 --vPtvlvfknGe~~d~~vG~~~~~~l~~ 142 (150)
T KOG0910|consen 116 --VPTVLVFKNGEKVDRFVGAVPKEQLRS 142 (150)
T ss_pred --eeEEEEEECCEEeeeecccCCHHHHHH
Confidence 999999999999999999987766543
No 6
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.84 E-value=6.3e-21 Score=148.54 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=93.7
Q ss_pred CCccccccccccCChhhHHHHHhcCCCCceEEEEEecCCChh--hH--HHhhhHHHHHHHc--CCCCcEEEEEECCCChh
Q 025628 110 QPVFQKLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSST--CI--RASRIFPELSIAY--SNKNVSFGIVDLGLFPN 183 (250)
Q Consensus 110 ~p~~~~~~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~--C~--~~~p~~~~l~~~y--~~~~v~f~~VDv~~~~~ 183 (250)
-|.|+|.+.+..+++++|++.+++++.. ++++|||+||+| |+ .++|++.+++.++ +. +++|++||++++++
T Consensus 2 ~~~~~~~~~v~~lt~~nF~~~v~~~~~~--vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~~~ 78 (120)
T cd03065 2 FPEYDGKDRVIDLNEKNYKQVLKKYDVL--CLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKDAK 78 (120)
T ss_pred CcccCCCcceeeCChhhHHHHHHhCCce--EEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCCHH
Confidence 4788999999999999999999444444 899999999988 99 8899999999988 54 79999999999999
Q ss_pred HHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeCCcCCCccccc
Q 025628 184 AAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFEEKFSHP 226 (250)
Q Consensus 184 la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g~~~~g~i~~~ 226 (250)
+|++|||.+ +||+++|++|+++. +.|..++..+..|
T Consensus 79 La~~~~I~~------iPTl~lfk~G~~v~-~~G~~~~~~l~~~ 114 (120)
T cd03065 79 VAKKLGLDE------EDSIYVFKDDEVIE-YDGEFAADTLVEF 114 (120)
T ss_pred HHHHcCCcc------ccEEEEEECCEEEE-eeCCCCHHHHHHH
Confidence 999999999 99999999999886 8888776666554
No 7
>PHA02278 thioredoxin-like protein
Probab=99.84 E-value=1.3e-20 Score=143.20 Aligned_cols=90 Identities=12% Similarity=0.179 Sum_probs=78.0
Q ss_pred hhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC----hhHHHHhCCccCCCCCCCC
Q 025628 125 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF----PNAAEKFGISLGGSMGQLP 200 (250)
Q Consensus 125 ~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~----~~la~k~~I~~~~~~~~lP 200 (250)
++|++.+ .+++. ++|+|||+||+||+.+.|.++++++++.. +..|+++|++++ ++++++|+|.+ +|
T Consensus 5 ~~~~~~i-~~~~~--vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~~~~~I~~------iP 74 (103)
T PHA02278 5 VDLNTAI-RQKKD--VIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAVKLFDIMS------TP 74 (103)
T ss_pred HHHHHHH-hCCCc--EEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHHHHCCCcc------cc
Confidence 5688888 55556 99999999999999999999999988643 578999999986 68999999999 99
Q ss_pred EEEEEeCCeEEEeeeCCcCCCccc
Q 025628 201 TYILFENNAEINRFPAFGFEEKFS 224 (250)
Q Consensus 201 Tlilf~~G~e~~r~~g~~~~g~i~ 224 (250)
|+++|++|+++.|..|..+..++.
T Consensus 75 T~i~fk~G~~v~~~~G~~~~~~l~ 98 (103)
T PHA02278 75 VLIGYKDGQLVKKYEDQVTPMQLQ 98 (103)
T ss_pred EEEEEECCEEEEEEeCCCCHHHHH
Confidence 999999999999999976554443
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.84 E-value=1.1e-20 Score=142.35 Aligned_cols=98 Identities=15% Similarity=0.254 Sum_probs=85.4
Q ss_pred ccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCC
Q 025628 118 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMG 197 (250)
Q Consensus 118 ~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~ 197 (250)
.+..+++++|++.+ .+++ +|+|.|||+||++|+++.|.++++++++++ +++|++||++++++++++++|.+
T Consensus 2 ~~~~l~~~~f~~~v-~~~~--~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~~~~~~~~~v~~----- 72 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGE--IWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDDRMLCRSQGVNS----- 72 (101)
T ss_pred CeEEcCHhhHHHHh-cCCC--eEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCccHHHHHHcCCCc-----
Confidence 35677888999988 5554 599999999999999999999999999986 69999999999999999999999
Q ss_pred CCCEEEEEeCCeEEEeeeCCcCCCcccc
Q 025628 198 QLPTYILFENNAEINRFPAFGFEEKFSH 225 (250)
Q Consensus 198 ~lPTlilf~~G~e~~r~~g~~~~g~i~~ 225 (250)
+||+++|++|++..++.|..+...+.+
T Consensus 73 -~Pt~~~~~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 73 -YPSLYVFPSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred -cCEEEEEcCCCCcccCCCCCCHHHHHh
Confidence 999999999998888888655544443
No 9
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.83 E-value=5.1e-20 Score=139.67 Aligned_cols=88 Identities=17% Similarity=0.267 Sum_probs=79.0
Q ss_pred ChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh---hHHHHhCCccCCCCCCC
Q 025628 123 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP---NAAEKFGISLGGSMGQL 199 (250)
Q Consensus 123 ~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~---~la~k~~I~~~~~~~~l 199 (250)
+.+++++.+ .+.++++++|+|||+||++|+.+.|.++++++++ +++.|++||+++++ +++++|+|.+ +
T Consensus 2 ~~~~~~~~i-~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~~~l~~~~~V~~------~ 72 (103)
T cd02985 2 SVEELDEAL-KKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDSTMELCRREKIIE------V 72 (103)
T ss_pred CHHHHHHHH-HHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHHHHHHHHcCCCc------C
Confidence 456788888 5555677999999999999999999999999999 48999999999875 7999999999 9
Q ss_pred CEEEEEeCCeEEEeeeCCcC
Q 025628 200 PTYILFENNAEINRFPAFGF 219 (250)
Q Consensus 200 PTlilf~~G~e~~r~~g~~~ 219 (250)
||+++|++|+++.+..|..+
T Consensus 73 Pt~~~~~~G~~v~~~~G~~~ 92 (103)
T cd02985 73 PHFLFYKDGEKIHEEEGIGP 92 (103)
T ss_pred CEEEEEeCCeEEEEEeCCCH
Confidence 99999999999999999864
No 10
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.82 E-value=5.1e-20 Score=139.14 Aligned_cols=99 Identities=21% Similarity=0.332 Sum_probs=84.4
Q ss_pred ccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCC
Q 025628 118 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMG 197 (250)
Q Consensus 118 ~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~ 197 (250)
.+..++++++++.+.++++ +++|+|||+||++|+.+.|.++++++++.. ++.|+++|++++++++++++|.+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~--~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~----- 73 (104)
T cd03004 2 SVITLTPEDFPELVLNRKE--PWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKYESLCQQANIRA----- 73 (104)
T ss_pred cceEcCHHHHHHHHhcCCC--eEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCchHHHHHHcCCCc-----
Confidence 3567788899998833334 599999999999999999999999999865 79999999999999999999999
Q ss_pred CCCEEEEEeCC-eEEEeeeCCcC-CCcccc
Q 025628 198 QLPTYILFENN-AEINRFPAFGF-EEKFSH 225 (250)
Q Consensus 198 ~lPTlilf~~G-~e~~r~~g~~~-~g~i~~ 225 (250)
+||+++|++| ++..++.|..+ ...+..
T Consensus 74 -~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 74 -YPTIRLYPGNASKYHSYNGWHRDADSILE 102 (104)
T ss_pred -ccEEEEEcCCCCCceEccCCCCCHHHHHh
Confidence 9999999988 88888888754 444433
No 11
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.82 E-value=9.7e-20 Score=140.29 Aligned_cols=108 Identities=16% Similarity=0.225 Sum_probs=91.7
Q ss_pred cccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCC
Q 025628 117 GISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSM 196 (250)
Q Consensus 117 ~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~ 196 (250)
+.+..++++++++.+.+.+++++++|+|||+||++|+.+.|.+++++.++. +++|++||++++ +++++|+|.+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~-~l~~~~~i~~---- 76 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA-FLVNYLDIKV---- 76 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh-HHHHhcCCCc----
Confidence 356678888898888444334569999999999999999999999999985 689999999998 9999999999
Q ss_pred CCCCEEEEEeCCeEEEeeeCCcCCCccccccccHHHHhhh
Q 025628 197 GQLPTYILFENNAEINRFPAFGFEEKFSHPHITKKLIAHH 236 (250)
Q Consensus 197 ~~lPTlilf~~G~e~~r~~g~~~~g~i~~~~~~~~~i~~~ 236 (250)
+||+++|++|+++.|..|..+.+. -.++++.+.+.
T Consensus 77 --~Pt~~~f~~G~~v~~~~G~~~~~~---~~~~~~~l~~~ 111 (113)
T cd02957 77 --LPTLLVYKNGELIDNIVGFEELGG---DDFTTEDLEKF 111 (113)
T ss_pred --CCEEEEEECCEEEEEEecHHHhCC---CCCCHHHHHHH
Confidence 999999999999999999876544 55667666654
No 12
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.81 E-value=8.4e-20 Score=140.33 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=83.7
Q ss_pred CChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCE
Q 025628 122 LTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPT 201 (250)
Q Consensus 122 l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPT 201 (250)
++.+++++.+.+.+++++|+|+|||+||++|+.+.|.++++.+++++.++.+++||++.+++++++++|.+ +||
T Consensus 9 ~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~------~Pt 82 (111)
T cd02963 9 LTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHS------VPA 82 (111)
T ss_pred eeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCcc------CCE
Confidence 45667766542545666799999999999999999999999999986679999999999999999999999 999
Q ss_pred EEEEeCCeEEEeeeCCcCCCcccc
Q 025628 202 YILFENNAEINRFPAFGFEEKFSH 225 (250)
Q Consensus 202 lilf~~G~e~~r~~g~~~~g~i~~ 225 (250)
+++|++|+.+.+..|..+...+..
T Consensus 83 ~~i~~~g~~~~~~~G~~~~~~l~~ 106 (111)
T cd02963 83 IVGIINGQVTFYHDSSFTKQHVVD 106 (111)
T ss_pred EEEEECCEEEEEecCCCCHHHHHH
Confidence 999999999999998765544433
No 13
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.81 E-value=1.2e-19 Score=135.12 Aligned_cols=90 Identities=23% Similarity=0.368 Sum_probs=79.2
Q ss_pred hHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEE
Q 025628 126 QLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILF 205 (250)
Q Consensus 126 ~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf 205 (250)
+|++.+ .++++++++|+|||+||++|+.+.|.+++++.++.+ ++.++++|++++++++++|+|.+ +||++++
T Consensus 2 ~f~~~i-~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~------~Pt~~~~ 73 (96)
T cd02956 2 NFQQVL-QESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQA------LPTVYLF 73 (96)
T ss_pred ChHHHH-HhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCC------CCEEEEE
Confidence 567777 445556699999999999999999999999999976 69999999999999999999999 9999999
Q ss_pred eCCeEEEeeeCCcCCCcc
Q 025628 206 ENNAEINRFPAFGFEEKF 223 (250)
Q Consensus 206 ~~G~e~~r~~g~~~~g~i 223 (250)
++|+++.++.|..+.+++
T Consensus 74 ~~g~~~~~~~g~~~~~~l 91 (96)
T cd02956 74 AAGQPVDGFQGAQPEEQL 91 (96)
T ss_pred eCCEEeeeecCCCCHHHH
Confidence 999999999987554444
No 14
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.81 E-value=1.9e-19 Score=134.53 Aligned_cols=99 Identities=25% Similarity=0.376 Sum_probs=88.0
Q ss_pred cccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCC
Q 025628 119 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQ 198 (250)
Q Consensus 119 v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~ 198 (250)
|..++++++++.+ .+ +.+.++|.||++||++|+.+.|.+++++++++. ++.|+.+|++++++++++|+|.+
T Consensus 1 v~~lt~~~f~~~i-~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~------ 71 (103)
T PF00085_consen 1 VIVLTDENFEKFI-NE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKS------ 71 (103)
T ss_dssp SEEESTTTHHHHH-TT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSS------
T ss_pred CEECCHHHHHHHH-Hc-cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCC------
Confidence 3567889999999 44 345599999999999999999999999999987 99999999999999999999999
Q ss_pred CCEEEEEeCCeEEEeeeCCcCCCccccc
Q 025628 199 LPTYILFENNAEINRFPAFGFEEKFSHP 226 (250)
Q Consensus 199 lPTlilf~~G~e~~r~~g~~~~g~i~~~ 226 (250)
+||++++++|++..++.|..+..++..|
T Consensus 72 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 99 (103)
T PF00085_consen 72 VPTIIFFKNGKEVKRYNGPRNAESLIEF 99 (103)
T ss_dssp SSEEEEEETTEEEEEEESSSSHHHHHHH
T ss_pred CCEEEEEECCcEEEEEECCCCHHHHHHH
Confidence 9999999999999999999666555444
No 15
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.6e-20 Score=160.60 Aligned_cols=102 Identities=19% Similarity=0.304 Sum_probs=96.2
Q ss_pred ccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCC
Q 025628 118 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMG 197 (250)
Q Consensus 118 ~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~ 197 (250)
.+.++|..+|+..+.++.+.++|+|+||||||++|+.+.|.++++..+|++ ++++++||+|+.+.++.+|||++
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~p~vAaqfgiqs----- 97 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAEPMVAAQFGVQS----- 97 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcchhHHHHhCcCc-----
Confidence 488899999988776777888899999999999999999999999999998 99999999999999999999999
Q ss_pred CCCEEEEEeCCeEEEeeeCCcCCCccccc
Q 025628 198 QLPTYILFENNAEINRFPAFGFEEKFSHP 226 (250)
Q Consensus 198 ~lPTlilf~~G~e~~r~~g~~~~g~i~~~ 226 (250)
+||+++|++|+.+.-++|..++..+..|
T Consensus 98 -IPtV~af~dGqpVdgF~G~qPesqlr~~ 125 (304)
T COG3118 98 -IPTVYAFKDGQPVDGFQGAQPESQLRQF 125 (304)
T ss_pred -CCeEEEeeCCcCccccCCCCcHHHHHHH
Confidence 9999999999999999999999888777
No 16
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.81 E-value=5.5e-19 Score=136.39 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=89.7
Q ss_pred cccccCCh-hhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCC
Q 025628 117 GISNKLTP-LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGS 195 (250)
Q Consensus 117 ~~v~~l~~-~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~ 195 (250)
+.+..++. +++++.+ .+++. ++|+||++||++|+.+.|.++++++++. +++|++||+++.++++++|+|.+
T Consensus 4 g~v~~i~~~~~~~~~i-~~~~~--vvV~f~a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~~~~l~~~~~v~~--- 75 (113)
T cd02989 4 GKYREVSDEKEFFEIV-KSSER--VVCHFYHPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEKAPFLVEKLNIKV--- 75 (113)
T ss_pred CCeEEeCCHHHHHHHH-hCCCc--EEEEEECCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcccCHHHHHHCCCcc---
Confidence 45666765 6799998 55555 9999999999999999999999999985 68999999999999999999999
Q ss_pred CCCCCEEEEEeCCeEEEeeeCCcCCCccccccccHHHHh
Q 025628 196 MGQLPTYILFENNAEINRFPAFGFEEKFSHPHITKKLIA 234 (250)
Q Consensus 196 ~~~lPTlilf~~G~e~~r~~g~~~~g~i~~~~~~~~~i~ 234 (250)
+||+++|++|+++.|+.|..+.+.... ++.+++.
T Consensus 76 ---vPt~l~fk~G~~v~~~~g~~~~~~~~~--~~~~~~e 109 (113)
T cd02989 76 ---LPTVILFKNGKTVDRIVGFEELGGKDD--FSTETLE 109 (113)
T ss_pred ---CCEEEEEECCEEEEEEECccccCCCCC--CCHHHHH
Confidence 999999999999999999987776532 3444443
No 17
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.80 E-value=3.3e-19 Score=152.91 Aligned_cols=122 Identities=20% Similarity=0.240 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCCccc-----cccccccCChhhHHHHHhcC--CCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCc
Q 025628 99 VVFLVIYILTQQPVFQ-----KLGISNKLTPLQLEALLTEG--KTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNV 171 (250)
Q Consensus 99 i~~~v~~~~~~~p~~~-----~~~~v~~l~~~~l~~~l~~~--~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v 171 (250)
++|++..+..+++.+. ..+.+..+++++|++.++.+ ...++|+|+|||+||++|+++.|.++++++++++ .+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v 85 (224)
T PTZ00443 7 ACCILFGLIADEATNVKLDAEDANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QV 85 (224)
T ss_pred HHHHHHHHHccccccccccccCCCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-Ce
Confidence 3444555555555432 24568889999999988322 2345699999999999999999999999999986 79
Q ss_pred EEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeCCcCCCcccccc
Q 025628 172 SFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFEEKFSHPH 227 (250)
Q Consensus 172 ~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g~~~~g~i~~~~ 227 (250)
.|+++|++++++++++|+|.+ +||+++|++|+++.+..|..+.+++..|.
T Consensus 86 ~~~~VD~~~~~~l~~~~~I~~------~PTl~~f~~G~~v~~~~G~~s~e~L~~fi 135 (224)
T PTZ00443 86 NVADLDATRALNLAKRFAIKG------YPTLLLFDKGKMYQYEGGDRSTEKLAAFA 135 (224)
T ss_pred EEEEecCcccHHHHHHcCCCc------CCEEEEEECCEEEEeeCCCCCHHHHHHHH
Confidence 999999999999999999999 99999999999988887866666665553
No 18
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.80 E-value=5.3e-19 Score=133.77 Aligned_cols=86 Identities=13% Similarity=0.259 Sum_probs=78.0
Q ss_pred ChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEE
Q 025628 123 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTY 202 (250)
Q Consensus 123 ~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTl 202 (250)
+.+++++.+ ++++. ++|+|||+||++|+.+.|.+++++++++++.+.|+++|++ .++++++|+|.+ +||+
T Consensus 6 ~~~~~~~~i-~~~~~--vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~------~Pt~ 75 (102)
T cd02948 6 NQEEWEELL-SNKGL--TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKC------EPTF 75 (102)
T ss_pred CHHHHHHHH-ccCCe--EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCc------CcEE
Confidence 567799988 65554 9999999999999999999999999998656899999999 889999999999 9999
Q ss_pred EEEeCCeEEEeeeCCc
Q 025628 203 ILFENNAEINRFPAFG 218 (250)
Q Consensus 203 ilf~~G~e~~r~~g~~ 218 (250)
++|++|+++.|..|..
T Consensus 76 ~~~~~g~~~~~~~G~~ 91 (102)
T cd02948 76 LFYKNGELVAVIRGAN 91 (102)
T ss_pred EEEECCEEEEEEecCC
Confidence 9999999999999973
No 19
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.80 E-value=2.4e-19 Score=135.45 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=77.2
Q ss_pred HHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC-CChhHHHHhCCccCCCCCCCCEEEEE
Q 025628 127 LEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG-LFPNAAEKFGISLGGSMGQLPTYILF 205 (250)
Q Consensus 127 l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~-~~~~la~k~~I~~~~~~~~lPTlilf 205 (250)
+.++. ...++++++|+|||+||++|+.+.|.+++++++++ ++.+++||.+ ++++++++|+|.+ +||+++|
T Consensus 9 ~~~~~-~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~~~~~l~~~~~V~~------~PT~~lf 79 (100)
T cd02999 9 ALDLM-AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEESSIKPSLLSRYGVVG------FPTILLF 79 (100)
T ss_pred HHHHH-HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCCCCHHHHHhcCCee------cCEEEEE
Confidence 33444 45567779999999999999999999999999986 6899999999 8999999999999 9999999
Q ss_pred eCCeEEEeeeCCcCCCccccc
Q 025628 206 ENNAEINRFPAFGFEEKFSHP 226 (250)
Q Consensus 206 ~~G~e~~r~~g~~~~g~i~~~ 226 (250)
++| ++.++.|..+.+.+..|
T Consensus 80 ~~g-~~~~~~G~~~~~~l~~f 99 (100)
T cd02999 80 NST-PRVRYNGTRTLDSLAAF 99 (100)
T ss_pred cCC-ceeEecCCCCHHHHHhh
Confidence 999 88899888665555444
No 20
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.80 E-value=2.4e-19 Score=136.68 Aligned_cols=100 Identities=22% Similarity=0.243 Sum_probs=82.7
Q ss_pred ccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCC-----CCcEEEEEECCCChhHHHHhCCcc
Q 025628 118 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN-----KNVSFGIVDLGLFPNAAEKFGISL 192 (250)
Q Consensus 118 ~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~-----~~v~f~~VDv~~~~~la~k~~I~~ 192 (250)
.+..++++++++.+ ++++. ++|.|||+||++|+++.|.+++++++++. .++.++++|++++++++++|+|.+
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~--vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~ 78 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAEL--VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK 78 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCE--EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc
Confidence 45678889999988 66555 99999999999999999999999887642 258999999999999999999999
Q ss_pred CCCCCCCCEEEEEeCCeE-EEeeeCCcCCCccccc
Q 025628 193 GGSMGQLPTYILFENNAE-INRFPAFGFEEKFSHP 226 (250)
Q Consensus 193 ~~~~~~lPTlilf~~G~e-~~r~~g~~~~g~i~~~ 226 (250)
+||+++|++|++ ..++.|..+...+..|
T Consensus 79 ------~Ptl~~~~~g~~~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 79 ------YPTLKLFRNGMMMKREYRGQRSVEALAEF 107 (108)
T ss_pred ------CCEEEEEeCCcCcceecCCCCCHHHHHhh
Confidence 999999999984 4666665544444433
No 21
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.79 E-value=9.8e-19 Score=134.01 Aligned_cols=106 Identities=19% Similarity=0.272 Sum_probs=89.6
Q ss_pred hhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEE
Q 025628 125 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYIL 204 (250)
Q Consensus 125 ~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlil 204 (250)
+++++.+ .....+.++|+|+|+||+||+.+.|.+++++.+|++ .+.|++||+++.++++++|+|.. .||+++
T Consensus 3 ~~~d~~i-~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~-~~~f~kVDVDev~dva~~y~I~a------mPtfvf 74 (114)
T cd02986 3 KEVDQAI-KSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK-MASIYLVDVDKVPVYTQYFDISY------IPSTIF 74 (114)
T ss_pred HHHHHHH-HhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC-ceEEEEEeccccHHHHHhcCcee------CcEEEE
Confidence 4577777 433566799999999999999999999999999963 39999999999999999999999 999999
Q ss_pred EeCCeEEEeeeCCcCCCccccccccHHHHhhhcc
Q 025628 205 FENNAEINRFPAFGFEEKFSHPHITKKLIAHHFQ 238 (250)
Q Consensus 205 f~~G~e~~r~~g~~~~g~i~~~~~~~~~i~~~f~ 238 (250)
|++|+-+.---|..+..++--..=++++++...+
T Consensus 75 fkngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e 108 (114)
T cd02986 75 FFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIE 108 (114)
T ss_pred EECCcEEEEecCCCCCcEEEEEcCchhHHHHHHH
Confidence 9999999887777777776655567777766543
No 22
>PRK09381 trxA thioredoxin; Provisional
Probab=99.79 E-value=6.9e-19 Score=134.11 Aligned_cols=98 Identities=20% Similarity=0.297 Sum_probs=85.7
Q ss_pred cccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCC
Q 025628 117 GISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSM 196 (250)
Q Consensus 117 ~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~ 196 (250)
+.+..++++++++.+.+.++ +++|+||++||++|+.+.|.++++++++++ ++.++.+|+++.+.++++|+|.+
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~--~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~---- 75 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADG--AILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRG---- 75 (109)
T ss_pred CcceeeChhhHHHHHhcCCC--eEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChhHHHhCCCCc----
Confidence 46778888889876634444 499999999999999999999999999986 79999999999999999999999
Q ss_pred CCCCEEEEEeCCeEEEeeeCCcCCCcc
Q 025628 197 GQLPTYILFENNAEINRFPAFGFEEKF 223 (250)
Q Consensus 197 ~~lPTlilf~~G~e~~r~~g~~~~g~i 223 (250)
+||+++|++|+++.+..|..+.+.+
T Consensus 76 --~Pt~~~~~~G~~~~~~~G~~~~~~l 100 (109)
T PRK09381 76 --IPTLLLFKNGEVAATKVGALSKGQL 100 (109)
T ss_pred --CCEEEEEeCCeEEEEecCCCCHHHH
Confidence 9999999999999999988554433
No 23
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.7e-19 Score=133.94 Aligned_cols=76 Identities=21% Similarity=0.447 Sum_probs=71.6
Q ss_pred CceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeC
Q 025628 137 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPA 216 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g 216 (250)
++.++|+|||+||+||+.++|.+.+++.+|+ ++.|++||+|+.++++++++|.. +||++++++|+++.++.|
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~--~v~Flkvdvde~~~~~~~~~V~~------~PTf~f~k~g~~~~~~vG 92 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYP--DVVFLKVDVDELEEVAKEFNVKA------MPTFVFYKGGEEVDEVVG 92 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCC--CCEEEEEecccCHhHHHhcCceE------eeEEEEEECCEEEEEEec
Confidence 4559999999999999999999999999997 49999999999999999999999 999999999999999999
Q ss_pred CcCC
Q 025628 217 FGFE 220 (250)
Q Consensus 217 ~~~~ 220 (250)
....
T Consensus 93 a~~~ 96 (106)
T KOG0907|consen 93 ANKA 96 (106)
T ss_pred CCHH
Confidence 8654
No 24
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.79 E-value=4.7e-19 Score=133.14 Aligned_cols=94 Identities=21% Similarity=0.340 Sum_probs=80.3
Q ss_pred ccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCC
Q 025628 118 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMG 197 (250)
Q Consensus 118 ~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~ 197 (250)
.+..+++++|++.+ ++ . ++|+|||+||++|+++.|.+++++++++..++.++++|+++++.++++|+|.+
T Consensus 2 ~v~~l~~~~f~~~~-~~--~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~----- 71 (101)
T cd02994 2 NVVELTDSNWTLVL-EG--E--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTA----- 71 (101)
T ss_pred ceEEcChhhHHHHh-CC--C--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcc-----
Confidence 45678888999877 32 2 78999999999999999999999998876679999999999999999999999
Q ss_pred CCCEEEEEeCCeEEEeeeCCcCCCcc
Q 025628 198 QLPTYILFENNAEINRFPAFGFEEKF 223 (250)
Q Consensus 198 ~lPTlilf~~G~e~~r~~g~~~~g~i 223 (250)
+||++++++|+ +.++.|..+...+
T Consensus 72 -~Pt~~~~~~g~-~~~~~G~~~~~~l 95 (101)
T cd02994 72 -LPTIYHAKDGV-FRRYQGPRDKEDL 95 (101)
T ss_pred -cCEEEEeCCCC-EEEecCCCCHHHH
Confidence 99999999997 4777776444333
No 25
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.79 E-value=1.4e-18 Score=138.67 Aligned_cols=105 Identities=12% Similarity=0.183 Sum_probs=83.6
Q ss_pred ChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEE
Q 025628 123 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTY 202 (250)
Q Consensus 123 ~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTl 202 (250)
+.+++++.+ .....++++|+|||+||+||+.+.|.++++++++++ .+.|++||+|+.++++++|+|.+ .||+
T Consensus 10 s~~e~d~~I-~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe~~dla~~y~I~~------~~t~ 81 (142)
T PLN00410 10 SGWAVDQAI-LAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN-FAVIYLVDITEVPDFNTMYELYD------PCTV 81 (142)
T ss_pred CHHHHHHHH-HhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCCCHHHHHHcCccC------CCcE
Confidence 346699988 444556699999999999999999999999999975 68899999999999999999997 7666
Q ss_pred E-EEeCCe-EEEeeeCCcCCCccccccccHHHHhhhc
Q 025628 203 I-LFENNA-EINRFPAFGFEEKFSHPHITKKLIAHHF 237 (250)
Q Consensus 203 i-lf~~G~-e~~r~~g~~~~g~i~~~~~~~~~i~~~f 237 (250)
+ +|++|+ ++.|..|..++ +.....++++++...
T Consensus 82 ~~ffk~g~~~vd~~tG~~~k--~~~~~~~k~~l~~~i 116 (142)
T PLN00410 82 MFFFRNKHIMIDLGTGNNNK--INWALKDKQEFIDIV 116 (142)
T ss_pred EEEEECCeEEEEEecccccc--cccccCCHHHHHHHH
Confidence 6 899999 88998886432 111224566665543
No 26
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.79 E-value=8e-19 Score=134.38 Aligned_cols=94 Identities=13% Similarity=0.195 Sum_probs=85.0
Q ss_pred ccccCChhhHHHHHhcCCCCceEEEEEecCC--ChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCC
Q 025628 118 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQC--SSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGS 195 (250)
Q Consensus 118 ~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~W--C~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~ 195 (250)
....++..+|++.+ +.+.. .+|.|||+| ||+|+.+.|.+++++++|++ .+.|+++|++++++++.+|+|.+
T Consensus 11 ~~~~~~~~~~~~~~-~~~~~--~v~~f~~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~~~~la~~f~V~s--- 83 (111)
T cd02965 11 GWPRVDAATLDDWL-AAGGD--LVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRADEQALAARFGVLR--- 83 (111)
T ss_pred CCcccccccHHHHH-hCCCC--EEEEecCCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCCCHHHHHHcCCCc---
Confidence 45677888999888 66666 899999997 99999999999999999985 78999999999999999999999
Q ss_pred CCCCCEEEEEeCCeEEEeeeCCcCCC
Q 025628 196 MGQLPTYILFENNAEINRFPAFGFEE 221 (250)
Q Consensus 196 ~~~lPTlilf~~G~e~~r~~g~~~~g 221 (250)
+||+++|++|+++.+..|..+..
T Consensus 84 ---IPTli~fkdGk~v~~~~G~~~~~ 106 (111)
T cd02965 84 ---TPALLFFRDGRYVGVLAGIRDWD 106 (111)
T ss_pred ---CCEEEEEECCEEEEEEeCccCHH
Confidence 99999999999999999975443
No 27
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.79 E-value=7.5e-19 Score=131.66 Aligned_cols=97 Identities=18% Similarity=0.322 Sum_probs=84.6
Q ss_pred cccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCC--CCcEEEEEECCCChhHHHHhCCccCCCC
Q 025628 119 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN--KNVSFGIVDLGLFPNAAEKFGISLGGSM 196 (250)
Q Consensus 119 v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~--~~v~f~~VDv~~~~~la~k~~I~~~~~~ 196 (250)
+..++++++++.+ .++ . ++|+|||+||++|+.+.|.+++++++++. +++.++++|++++++++++|+|.+
T Consensus 2 ~~~l~~~~f~~~~-~~~-~--~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~---- 73 (102)
T cd03005 2 VLELTEDNFDHHI-AEG-N--HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRG---- 73 (102)
T ss_pred eeECCHHHHHHHh-hcC-C--EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCc----
Confidence 4567888999998 443 3 99999999999999999999999999875 479999999999999999999999
Q ss_pred CCCCEEEEEeCCeEEEeeeCCcCCCcccc
Q 025628 197 GQLPTYILFENNAEINRFPAFGFEEKFSH 225 (250)
Q Consensus 197 ~~lPTlilf~~G~e~~r~~g~~~~g~i~~ 225 (250)
+||++++++|+++.++.|..+...+.+
T Consensus 74 --~Pt~~~~~~g~~~~~~~G~~~~~~l~~ 100 (102)
T cd03005 74 --YPTLLLFKDGEKVDKYKGTRDLDSLKE 100 (102)
T ss_pred --CCEEEEEeCCCeeeEeeCCCCHHHHHh
Confidence 999999999999999998866554443
No 28
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.76 E-value=6.7e-18 Score=125.57 Aligned_cols=88 Identities=25% Similarity=0.466 Sum_probs=78.7
Q ss_pred hhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEE
Q 025628 124 PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 203 (250)
Q Consensus 124 ~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTli 203 (250)
.+++++.+ ....+++++|+|||+||++|+++.|.++++++++. .++.++++|.++.++++++|+|.+ +||++
T Consensus 2 ~~~~~~~~-~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~------~Pt~~ 73 (97)
T cd02984 2 EEEFEELL-KSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-PSVLFLSIEAEELPEISEKFEITA------VPTFV 73 (97)
T ss_pred HHHHHHHH-hhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-CceEEEEEccccCHHHHHhcCCcc------ccEEE
Confidence 46788888 44435679999999999999999999999999973 489999999999999999999999 99999
Q ss_pred EEeCCeEEEeeeCCcC
Q 025628 204 LFENNAEINRFPAFGF 219 (250)
Q Consensus 204 lf~~G~e~~r~~g~~~ 219 (250)
+|++|+++.+..|..+
T Consensus 74 ~~~~g~~~~~~~g~~~ 89 (97)
T cd02984 74 FFRNGTIVDRVSGADP 89 (97)
T ss_pred EEECCEEEEEEeCCCH
Confidence 9999999999999743
No 29
>PRK10996 thioredoxin 2; Provisional
Probab=99.76 E-value=4.6e-18 Score=135.85 Aligned_cols=95 Identities=21% Similarity=0.320 Sum_probs=83.7
Q ss_pred cccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCC
Q 025628 119 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQ 198 (250)
Q Consensus 119 v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~ 198 (250)
+..++.+++++.+ ++++. ++|+|||+||++|+.+.|.++++++++.. ++.|+++|++++++++++|+|.+
T Consensus 37 ~i~~~~~~~~~~i-~~~k~--vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~------ 106 (139)
T PRK10996 37 VINATGETLDKLL-QDDLP--VVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRS------ 106 (139)
T ss_pred CEEcCHHHHHHHH-hCCCe--EEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCc------
Confidence 4557888899888 55555 99999999999999999999999998875 79999999999999999999999
Q ss_pred CCEEEEEeCCeEEEeeeCCcCCCcc
Q 025628 199 LPTYILFENNAEINRFPAFGFEEKF 223 (250)
Q Consensus 199 lPTlilf~~G~e~~r~~g~~~~g~i 223 (250)
+||+++|++|+++.++.|..+++.+
T Consensus 107 ~Ptlii~~~G~~v~~~~G~~~~e~l 131 (139)
T PRK10996 107 IPTIMIFKNGQVVDMLNGAVPKAPF 131 (139)
T ss_pred cCEEEEEECCEEEEEEcCCCCHHHH
Confidence 9999999999999999997544433
No 30
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.76 E-value=8.4e-18 Score=139.39 Aligned_cols=110 Identities=14% Similarity=0.197 Sum_probs=92.6
Q ss_pred cccccccCCh-hhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccC
Q 025628 115 KLGISNKLTP-LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLG 193 (250)
Q Consensus 115 ~~~~v~~l~~-~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~ 193 (250)
..+.+..++. ++|.+.+.+.++..+++|+|||+||++|+.+.|.+++++.+|. +++|++||+++. .++.+|+|.+
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~-~l~~~f~v~~- 135 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT-GASDEFDTDA- 135 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch-hhHHhCCCCC-
Confidence 3456778877 7888888444555679999999999999999999999999985 799999999987 8999999999
Q ss_pred CCCCCCCEEEEEeCCeEEEeeeCCcCCCccccccccHHHHhhh
Q 025628 194 GSMGQLPTYILFENNAEINRFPAFGFEEKFSHPHITKKLIAHH 236 (250)
Q Consensus 194 ~~~~~lPTlilf~~G~e~~r~~g~~~~g~i~~~~~~~~~i~~~ 236 (250)
+||+++|++|+++.++.|....+.- .++.+.+...
T Consensus 136 -----vPTlllyk~G~~v~~~vG~~~~~g~---~f~~~~le~~ 170 (175)
T cd02987 136 -----LPALLVYKGGELIGNFVRVTEDLGE---DFDAEDLESF 170 (175)
T ss_pred -----CCEEEEEECCEEEEEEechHHhcCC---CCCHHHHHHH
Confidence 9999999999999999999765432 5666655543
No 31
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.75 E-value=6.8e-18 Score=129.10 Aligned_cols=94 Identities=19% Similarity=0.263 Sum_probs=78.1
Q ss_pred ccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC-ChhHHH-HhCCccCCC
Q 025628 118 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-FPNAAE-KFGISLGGS 195 (250)
Q Consensus 118 ~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~-~~~la~-k~~I~~~~~ 195 (250)
.+..++++++++.....+.+++++|.|||+||++|+++.|.+++++.+++++++.+++||++. ...++. .++|.+
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~--- 78 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKS--- 78 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCc---
Confidence 467888899998883344555699999999999999999999999999987679999999997 577776 499999
Q ss_pred CCCCCEEEEEeCC-eEEEeeeCC
Q 025628 196 MGQLPTYILFENN-AEINRFPAF 217 (250)
Q Consensus 196 ~~~lPTlilf~~G-~e~~r~~g~ 217 (250)
+||+++|++| ++..++.|.
T Consensus 79 ---~Pti~~f~~~~~~~~~y~g~ 98 (109)
T cd02993 79 ---FPTILFFPKNSRQPIKYPSE 98 (109)
T ss_pred ---CCEEEEEcCCCCCceeccCC
Confidence 9999999765 455566653
No 32
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.75 E-value=4.9e-18 Score=128.95 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=73.5
Q ss_pred cccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC--ChhHHHHhCCccCCCC
Q 025628 119 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL--FPNAAEKFGISLGGSM 196 (250)
Q Consensus 119 v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~--~~~la~k~~I~~~~~~ 196 (250)
+..++++++++.+.+++ ++++|.|||+||++|+++.|.++++++++.. .+.++.+|++. +++++++|+|.+
T Consensus 2 v~~l~~~~~~~~i~~~~--~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~~~~~~~~~i~~---- 74 (109)
T cd03002 2 VYELTPKNFDKVVHNTN--YTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKNKPLCGKYGVQG---- 74 (109)
T ss_pred eEEcchhhHHHHHhcCC--CeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCccccHHHHHHcCCCc----
Confidence 45678889999883443 4599999999999999999999999999875 79999999998 889999999999
Q ss_pred CCCCEEEEEeCCeE
Q 025628 197 GQLPTYILFENNAE 210 (250)
Q Consensus 197 ~~lPTlilf~~G~e 210 (250)
+||+++|++|++
T Consensus 75 --~Pt~~~~~~~~~ 86 (109)
T cd03002 75 --FPTLKVFRPPKK 86 (109)
T ss_pred --CCEEEEEeCCCc
Confidence 999999999874
No 33
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.75 E-value=8.5e-18 Score=126.20 Aligned_cols=98 Identities=18% Similarity=0.265 Sum_probs=83.9
Q ss_pred cccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCC-CCcEEEEEECCC--ChhHHHHhCCccCCC
Q 025628 119 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN-KNVSFGIVDLGL--FPNAAEKFGISLGGS 195 (250)
Q Consensus 119 v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~-~~v~f~~VDv~~--~~~la~k~~I~~~~~ 195 (250)
+..++++++++.+ ++++. ++|.|||+||++|+++.|.+.+++++++. ..+.++++|+++ ++.++++++|.+
T Consensus 2 ~~~l~~~~~~~~~-~~~~~--~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~--- 75 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKH--VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKG--- 75 (104)
T ss_pred eEEechHhHHHHH-hhCCC--EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcc---
Confidence 4567778899888 65554 99999999999999999999999998863 368999999998 899999999999
Q ss_pred CCCCCEEEEEeCCeEEEeeeCCcCCCcccc
Q 025628 196 MGQLPTYILFENNAEINRFPAFGFEEKFSH 225 (250)
Q Consensus 196 ~~~lPTlilf~~G~e~~r~~g~~~~g~i~~ 225 (250)
+||+++|++|+.+.++.|..+..++..
T Consensus 76 ---~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 102 (104)
T cd02997 76 ---FPTFKYFENGKFVEKYEGERTAEDIIE 102 (104)
T ss_pred ---ccEEEEEeCCCeeEEeCCCCCHHHHHh
Confidence 999999999998888888765555443
No 34
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.74 E-value=1.2e-17 Score=125.22 Aligned_cols=99 Identities=19% Similarity=0.312 Sum_probs=81.2
Q ss_pred cccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCC
Q 025628 119 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQ 198 (250)
Q Consensus 119 v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~ 198 (250)
+..++++++++.+.++++ +++|.|||+||++|+++.|.+.++++++.. .+.++.+|++++++++++++|.+
T Consensus 2 v~~l~~~~~~~~i~~~~~--~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~------ 72 (103)
T cd03001 2 VVELTDSNFDKKVLNSDD--VWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRG------ 72 (103)
T ss_pred eEEcCHHhHHHHHhcCCC--cEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCc------
Confidence 456788899998834433 499999999999999999999999999875 79999999999999999999999
Q ss_pred CCEEEEEeCC-eEEEeeeCCcCCCccccc
Q 025628 199 LPTYILFENN-AEINRFPAFGFEEKFSHP 226 (250)
Q Consensus 199 lPTlilf~~G-~e~~r~~g~~~~g~i~~~ 226 (250)
+||+++|++| +...++.|..+..++..|
T Consensus 73 ~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 101 (103)
T cd03001 73 FPTIKVFGAGKNSPQDYQGGRTAKAIVSA 101 (103)
T ss_pred cCEEEEECCCCcceeecCCCCCHHHHHHH
Confidence 9999999988 445566665444444433
No 35
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.73 E-value=1.4e-17 Score=124.89 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=81.8
Q ss_pred cccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCC-CCcEEEEEECCCChhHHHHhCCccCCCCC
Q 025628 119 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN-KNVSFGIVDLGLFPNAAEKFGISLGGSMG 197 (250)
Q Consensus 119 v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~-~~v~f~~VDv~~~~~la~k~~I~~~~~~~ 197 (250)
+..++++++++.+.+.++. ++|+|||+||++|+.+.|.+++++++++. .++.++++|++++ +.+.++++.+
T Consensus 2 v~~l~~~~f~~~i~~~~~~--~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~----- 73 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKD--VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDG----- 73 (104)
T ss_pred eEEEchhhhHHHHhCCCCc--EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCC-----
Confidence 5678889999988344444 99999999999999999999999999876 5799999999987 5788899988
Q ss_pred CCCEEEEEeCCe--EEEeeeCCcCCCccccc
Q 025628 198 QLPTYILFENNA--EINRFPAFGFEEKFSHP 226 (250)
Q Consensus 198 ~lPTlilf~~G~--e~~r~~g~~~~g~i~~~ 226 (250)
+||+++|++|+ +..++.|..+...+..|
T Consensus 74 -~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~f 103 (104)
T cd02995 74 -FPTILFFPAGDKSNPIKYEGDRTLEDLIKF 103 (104)
T ss_pred -CCEEEEEcCCCcCCceEccCCcCHHHHHhh
Confidence 99999999887 66677776555554444
No 36
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=8.1e-18 Score=143.12 Aligned_cols=94 Identities=22% Similarity=0.387 Sum_probs=84.2
Q ss_pred cccCChh-hHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCC
Q 025628 119 SNKLTPL-QLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMG 197 (250)
Q Consensus 119 v~~l~~~-~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~ 197 (250)
|..++++ .|+..+ .....+.++|+|+|+||+||++.+|.|++++.+|. +..|.+||+++....|..+||+.
T Consensus 3 Vi~v~~d~df~~~l-s~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~c~~taa~~gV~a----- 74 (288)
T KOG0908|consen 3 VIVVNSDSDFQREL-SAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDECRGTAATNGVNA----- 74 (288)
T ss_pred eEEecCcHHHHHhh-hccCceEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHHhhchhhhcCccc-----
Confidence 3445444 499988 77777789999999999999999999999999995 89999999999999999999999
Q ss_pred CCCEEEEEeCCeEEEeeeCCcCCC
Q 025628 198 QLPTYILFENNAEINRFPAFGFEE 221 (250)
Q Consensus 198 ~lPTlilf~~G~e~~r~~g~~~~g 221 (250)
.||+++|+||+.+.++.|.+..|
T Consensus 75 -mPTFiff~ng~kid~~qGAd~~g 97 (288)
T KOG0908|consen 75 -MPTFIFFRNGVKIDQIQGADASG 97 (288)
T ss_pred -CceEEEEecCeEeeeecCCCHHH
Confidence 99999999999999999986544
No 37
>PTZ00051 thioredoxin; Provisional
Probab=99.71 E-value=7.4e-17 Score=120.26 Aligned_cols=85 Identities=25% Similarity=0.433 Sum_probs=76.5
Q ss_pred ChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEE
Q 025628 123 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTY 202 (250)
Q Consensus 123 ~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTl 202 (250)
+.+++++.+ +.++. ++|.||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|+|.+ +||+
T Consensus 7 ~~~~~~~~~-~~~~~--vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~~~~~~~~~v~~------~Pt~ 75 (98)
T PTZ00051 7 SQAEFESTL-SQNEL--VIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDELSEVAEKENITS------MPTF 75 (98)
T ss_pred CHHHHHHHH-hcCCe--EEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcchHHHHHHCCCce------eeEE
Confidence 345688888 55555 9999999999999999999999999875 69999999999999999999999 9999
Q ss_pred EEEeCCeEEEeeeCCc
Q 025628 203 ILFENNAEINRFPAFG 218 (250)
Q Consensus 203 ilf~~G~e~~r~~g~~ 218 (250)
+++++|+++.+..|..
T Consensus 76 ~~~~~g~~~~~~~G~~ 91 (98)
T PTZ00051 76 KVFKNGSVVDTLLGAN 91 (98)
T ss_pred EEEeCCeEEEEEeCCC
Confidence 9999999999999973
No 38
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.70 E-value=5.1e-17 Score=121.90 Aligned_cols=92 Identities=22% Similarity=0.344 Sum_probs=76.6
Q ss_pred cccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcC-CCCcEEEEEECCC-ChhHHHHhCCccCCCC
Q 025628 119 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYS-NKNVSFGIVDLGL-FPNAAEKFGISLGGSM 196 (250)
Q Consensus 119 v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~-~~~v~f~~VDv~~-~~~la~k~~I~~~~~~ 196 (250)
+..++++++++.+ .+. +++++|.|||+||++|+++.|.+.+++++++ .+++.++.+|+++ +++++++++|.+
T Consensus 2 ~~~l~~~~~~~~~-~~~-~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~---- 75 (105)
T cd02998 2 VVELTDSNFDKVV-GDD-KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSG---- 75 (105)
T ss_pred eEEcchhcHHHHh-cCC-CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCC----
Confidence 4567888898877 433 3449999999999999999999999999987 3479999999999 999999999999
Q ss_pred CCCCEEEEEeCC-eEEEeeeCCc
Q 025628 197 GQLPTYILFENN-AEINRFPAFG 218 (250)
Q Consensus 197 ~~lPTlilf~~G-~e~~r~~g~~ 218 (250)
+||+++|++| +...++.|..
T Consensus 76 --~P~~~~~~~~~~~~~~~~g~~ 96 (105)
T cd02998 76 --FPTLKFFPKGSTEPVKYEGGR 96 (105)
T ss_pred --cCEEEEEeCCCCCccccCCcc
Confidence 9999999877 4444555543
No 39
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.70 E-value=8.9e-17 Score=119.45 Aligned_cols=92 Identities=26% Similarity=0.430 Sum_probs=79.1
Q ss_pred ChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEE
Q 025628 123 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTY 202 (250)
Q Consensus 123 ~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTl 202 (250)
+++++++.+++++ ++++|.||++||++|+.+.|.+++++++++. ++.|+.+|+++++.++++|+|.. +||+
T Consensus 2 ~~~~~~~~~~~~~--~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~------~P~~ 72 (101)
T TIGR01068 2 TDANFDETIASSD--KPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRS------IPTL 72 (101)
T ss_pred CHHHHHHHHhhcC--CcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCc------CCEE
Confidence 5677888883333 3499999999999999999999999988864 79999999999999999999999 9999
Q ss_pred EEEeCCeEEEeeeCCcCCCcc
Q 025628 203 ILFENNAEINRFPAFGFEEKF 223 (250)
Q Consensus 203 ilf~~G~e~~r~~g~~~~g~i 223 (250)
+++++|+...+..|..+...+
T Consensus 73 ~~~~~g~~~~~~~g~~~~~~l 93 (101)
T TIGR01068 73 LLFKNGKEVDRSVGALPKAAL 93 (101)
T ss_pred EEEeCCcEeeeecCCCCHHHH
Confidence 999999999888887543333
No 40
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.70 E-value=1.1e-16 Score=119.81 Aligned_cols=88 Identities=19% Similarity=0.312 Sum_probs=77.1
Q ss_pred HHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEe
Q 025628 127 LEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFE 206 (250)
Q Consensus 127 l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~ 206 (250)
++..+.+.++ ++++.||++||+.|+.+.|.++++++++++ ++.+.++|+++.++++++++|.+ +||+++++
T Consensus 5 ~~~~~~~~~~--~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~------vPt~~i~~ 75 (97)
T cd02949 5 LRKLYHESDR--LILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMG------TPTVQFFK 75 (97)
T ss_pred HHHHHHhCCC--eEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCee------ccEEEEEE
Confidence 5556624444 499999999999999999999999999875 79999999999999999999999 99999999
Q ss_pred CCeEEEeeeCCcCCCcc
Q 025628 207 NNAEINRFPAFGFEEKF 223 (250)
Q Consensus 207 ~G~e~~r~~g~~~~g~i 223 (250)
+|+++.+..|..++..+
T Consensus 76 ~g~~v~~~~g~~~~~~~ 92 (97)
T cd02949 76 DKELVKEISGVKMKSEY 92 (97)
T ss_pred CCeEEEEEeCCccHHHH
Confidence 99999999998665443
No 41
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.69 E-value=1.8e-16 Score=133.29 Aligned_cols=107 Identities=14% Similarity=0.176 Sum_probs=90.0
Q ss_pred cccccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCC
Q 025628 115 KLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGG 194 (250)
Q Consensus 115 ~~~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~ 194 (250)
+.+.+..++.+++.+.+.+.++..+|+|+||++||++|+.+.|.+++++.+|. .++|++||+++. +.+|++..
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~---~~~~~i~~-- 152 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQC---IPNYPDKN-- 152 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHh---HhhCCCCC--
Confidence 44667888888887766355565679999999999999999999999999995 799999999853 68999999
Q ss_pred CCCCCCEEEEEeCCeEEEeeeCCcCCCccccccccHHHHhh
Q 025628 195 SMGQLPTYILFENNAEINRFPAFGFEEKFSHPHITKKLIAH 235 (250)
Q Consensus 195 ~~~~lPTlilf~~G~e~~r~~g~~~~g~i~~~~~~~~~i~~ 235 (250)
+||+++|++|+.+.++.|..+-|.- .++.+++..
T Consensus 153 ----lPTlliyk~G~~v~~ivG~~~~gg~---~~~~~~lE~ 186 (192)
T cd02988 153 ----LPTILVYRNGDIVKQFIGLLEFGGM---NTTMEDLEW 186 (192)
T ss_pred ----CCEEEEEECCEEEEEEeCchhhCCC---CCCHHHHHH
Confidence 9999999999999999999876554 556666554
No 42
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.69 E-value=8.7e-17 Score=120.00 Aligned_cols=93 Identities=20% Similarity=0.277 Sum_probs=79.7
Q ss_pred CChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCC-CcEEEEEECCCChhHHHHhCCccCCCCCCCC
Q 025628 122 LTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK-NVSFGIVDLGLFPNAAEKFGISLGGSMGQLP 200 (250)
Q Consensus 122 l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~-~v~f~~VDv~~~~~la~k~~I~~~~~~~~lP 200 (250)
++++++++.+ .+++ +++|.||++||++|+.+.|.++++++.++.. ++.++.+|++++++++++|+|.+ +|
T Consensus 1 l~~~~~~~~~-~~~~--~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~------~P 71 (102)
T TIGR01126 1 LTASNFDDIV-LSNK--DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSG------FP 71 (102)
T ss_pred CchhhHHHHh-ccCC--cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCc------CC
Confidence 4677899888 5444 4999999999999999999999999998765 59999999999999999999999 99
Q ss_pred EEEEEeCCeEEEeeeCCcCCCcc
Q 025628 201 TYILFENNAEINRFPAFGFEEKF 223 (250)
Q Consensus 201 Tlilf~~G~e~~r~~g~~~~g~i 223 (250)
|++++++|+...++.|..+..++
T Consensus 72 ~~~~~~~~~~~~~~~g~~~~~~l 94 (102)
T TIGR01126 72 TIKFFPKGKKPVDYEGGRDLEAI 94 (102)
T ss_pred EEEEecCCCcceeecCCCCHHHH
Confidence 99999988877777776444433
No 43
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.69 E-value=3.8e-17 Score=123.51 Aligned_cols=88 Identities=24% Similarity=0.397 Sum_probs=75.2
Q ss_pred hhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhH---HHHHHHcCCCCcEEEEEECCC----ChhHHHHhCCccCCCCC
Q 025628 125 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIF---PELSIAYSNKNVSFGIVDLGL----FPNAAEKFGISLGGSMG 197 (250)
Q Consensus 125 ~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~---~~l~~~y~~~~v~f~~VDv~~----~~~la~k~~I~~~~~~~ 197 (250)
+.+++.+ ++++. ++|+|||+||++|+.+.|.+ +++++.+++ ++.++.+|+++ .++++++|+|.+
T Consensus 2 ~~~~~~~-~~~k~--vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~----- 72 (104)
T cd02953 2 AALAQAL-AQGKP--VFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFG----- 72 (104)
T ss_pred HHHHHHH-HcCCe--EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCC-----
Confidence 4577777 66655 99999999999999999987 688888876 89999999987 567899999999
Q ss_pred CCCEEEEEe--CCeEEEeeeCCcCCCc
Q 025628 198 QLPTYILFE--NNAEINRFPAFGFEEK 222 (250)
Q Consensus 198 ~lPTlilf~--~G~e~~r~~g~~~~g~ 222 (250)
+||+++|+ +|+++.|.+|..+..+
T Consensus 73 -~Pti~~~~~~~g~~~~~~~G~~~~~~ 98 (104)
T cd02953 73 -PPTYLFYGPGGEPEPLRLPGFLTADE 98 (104)
T ss_pred -CCEEEEECCCCCCCCcccccccCHHH
Confidence 99999998 7999999999855443
No 44
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.68 E-value=1.3e-16 Score=127.95 Aligned_cols=88 Identities=16% Similarity=0.290 Sum_probs=75.0
Q ss_pred hhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC--hhHHHHhCCccCCCCCCCCEE
Q 025628 125 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF--PNAAEKFGISLGGSMGQLPTY 202 (250)
Q Consensus 125 ~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~--~~la~k~~I~~~~~~~~lPTl 202 (250)
.++++.+ .+++. ++|+|||+||++|+.+.|.+.++++++.. ++.|+.||++.. ++++++|+|.+ +||+
T Consensus 11 ~~~~~a~-~~gk~--vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~~~~~V~~------iPt~ 80 (142)
T cd02950 11 TPPEVAL-SNGKP--TLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEIDRYRVDG------IPHF 80 (142)
T ss_pred CCHHHHH-hCCCE--EEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHHHHcCCCC------CCEE
Confidence 4577777 55555 99999999999999999999999999975 688998888854 58899999999 9999
Q ss_pred EEEe-CCeEEEeeeCCcCCCc
Q 025628 203 ILFE-NNAEINRFPAFGFEEK 222 (250)
Q Consensus 203 ilf~-~G~e~~r~~g~~~~g~ 222 (250)
++|+ +|+++.++.|..+...
T Consensus 81 v~~~~~G~~v~~~~G~~~~~~ 101 (142)
T cd02950 81 VFLDREGNEEGQSIGLQPKQV 101 (142)
T ss_pred EEECCCCCEEEEEeCCCCHHH
Confidence 9995 8999999999865443
No 45
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.68 E-value=1.2e-16 Score=120.98 Aligned_cols=87 Identities=18% Similarity=0.373 Sum_probs=70.6
Q ss_pred hhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCC--CCcEEEEEECCCChhHHHHhCCccCCCCCCCCEE
Q 025628 125 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN--KNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTY 202 (250)
Q Consensus 125 ~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~--~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTl 202 (250)
+++++.. +++ +++|.|||+||++|+++.|.+++++++++. .++.++++|++.+++++++|+|.+ +||+
T Consensus 7 ~~~~~~~--~~~--~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~------~Pt~ 76 (104)
T cd03000 7 DSFKDVR--KED--IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRG------YPTI 76 (104)
T ss_pred hhhhhhc--cCC--eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCcc------ccEE
Confidence 4466533 333 599999999999999999999999999854 258999999999999999999999 9999
Q ss_pred EEEeCCeEEEeeeCCcCCCc
Q 025628 203 ILFENNAEINRFPAFGFEEK 222 (250)
Q Consensus 203 ilf~~G~e~~r~~g~~~~g~ 222 (250)
++|++| ...++.|..+...
T Consensus 77 ~l~~~~-~~~~~~G~~~~~~ 95 (104)
T cd03000 77 KLLKGD-LAYNYRGPRTKDD 95 (104)
T ss_pred EEEcCC-CceeecCCCCHHH
Confidence 999877 4456666544333
No 46
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.68 E-value=2.2e-16 Score=116.54 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=80.4
Q ss_pred cCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcC-CCCcEEEEEECCCChhHHHHhCCccCCCCCCC
Q 025628 121 KLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYS-NKNVSFGIVDLGLFPNAAEKFGISLGGSMGQL 199 (250)
Q Consensus 121 ~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~-~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~l 199 (250)
.++++++++.+ ++++. ++|.||++||++|+.+.|.+.++++.++ .+++.|+.+|+++++.++++|+|.+ +
T Consensus 2 ~l~~~~~~~~i-~~~~~--~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~------~ 72 (101)
T cd02961 2 ELTDDNFDELV-KDSKD--VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRG------Y 72 (101)
T ss_pred cccHHHHHHHH-hCCCc--EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCC------C
Confidence 46778899988 65554 9999999999999999999999999984 4589999999999999999999999 9
Q ss_pred CEEEEEeCC-eEEEeeeCCcCCCcc
Q 025628 200 PTYILFENN-AEINRFPAFGFEEKF 223 (250)
Q Consensus 200 PTlilf~~G-~e~~r~~g~~~~g~i 223 (250)
||++++++| ++..++.|..+..++
T Consensus 73 Pt~~~~~~~~~~~~~~~g~~~~~~i 97 (101)
T cd02961 73 PTIKLFPNGSKEPVKYEGPRTLESL 97 (101)
T ss_pred CEEEEEcCCCcccccCCCCcCHHHH
Confidence 999999987 777777776543333
No 47
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.68 E-value=3.3e-16 Score=122.48 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=72.8
Q ss_pred cccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh-----------hHHHH
Q 025628 119 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-----------NAAEK 187 (250)
Q Consensus 119 v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~-----------~la~k 187 (250)
+..++.+++++.+ ++++. .+|.|+++|||+|+.+.|.+.+++++. +.+++.||+++++ ++.++
T Consensus 8 ~~~it~~~~~~~i-~~~~~--~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~~~ 81 (122)
T TIGR01295 8 LEVTTVVRALEAL-DKKET--ATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFRSR 81 (122)
T ss_pred ceecCHHHHHHHH-HcCCc--EEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHHHH
Confidence 4556778888888 66666 899999999999999999999999983 6789999998654 34466
Q ss_pred hCCccCCCCCCCCEEEEEeCCeEEEeeeCC
Q 025628 188 FGISLGGSMGQLPTYILFENNAEINRFPAF 217 (250)
Q Consensus 188 ~~I~~~~~~~~lPTlilf~~G~e~~r~~g~ 217 (250)
|++..+..+ +||+++|++|+++.+..|.
T Consensus 82 ~~i~~~i~~--~PT~v~~k~Gk~v~~~~G~ 109 (122)
T TIGR01295 82 FGIPTSFMG--TPTFVHITDGKQVSVRCGS 109 (122)
T ss_pred cCCcccCCC--CCEEEEEeCCeEEEEEeCC
Confidence 654322222 9999999999999999885
No 48
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.66 E-value=5.9e-16 Score=119.57 Aligned_cols=93 Identities=20% Similarity=0.244 Sum_probs=76.3
Q ss_pred ccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCC--CCcEEEEEECC--CChhHHHHhCCccC
Q 025628 118 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN--KNVSFGIVDLG--LFPNAAEKFGISLG 193 (250)
Q Consensus 118 ~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~--~~v~f~~VDv~--~~~~la~k~~I~~~ 193 (250)
.+..++++++++.+ .+++ ++|+|+|||+||++|+.+.|.+++++.++++ +.+.|+++|++ ++++++++|+|.+
T Consensus 2 ~v~~l~~~~f~~~i-~~~~-~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~- 78 (114)
T cd02992 2 PVIVLDAASFNSAL-LGSP-SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG- 78 (114)
T ss_pred CeEECCHHhHHHHH-hcCC-CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC-
Confidence 45678889999998 4433 5699999999999999999999999998753 25899999976 4678999999999
Q ss_pred CCCCCCCEEEEEeCCeEEEeeeCCcC
Q 025628 194 GSMGQLPTYILFENNAEINRFPAFGF 219 (250)
Q Consensus 194 ~~~~~lPTlilf~~G~e~~r~~g~~~ 219 (250)
+||+++|++|+ .....|.+-
T Consensus 79 -----~Pt~~lf~~~~-~~~~~~~~~ 98 (114)
T cd02992 79 -----YPTLRYFPPFS-KEATDGLKQ 98 (114)
T ss_pred -----CCEEEEECCCC-ccCCCCCcc
Confidence 99999999887 444444433
No 49
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.65 E-value=4.5e-16 Score=120.09 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=70.3
Q ss_pred CceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEE--ee
Q 025628 137 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEIN--RF 214 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~--r~ 214 (250)
++.++|.|||+||++|+.+.|.+++++.++ ++++|.++|++++++++++|+|.+ +||++++++|++.. ++
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~~~l~~~~~v~~------vPt~~i~~~g~~~~~~~~ 93 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDEDKEKAEKYGVER------VPTTIFLQDGGKDGGIRY 93 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcCHHHHHHcCCCc------CCEEEEEeCCeecceEEE
Confidence 344899999999999999999999999886 379999999999999999999999 99999999886655 77
Q ss_pred eCCcCCCccccc
Q 025628 215 PAFGFEEKFSHP 226 (250)
Q Consensus 215 ~g~~~~g~i~~~ 226 (250)
.|..+...+..+
T Consensus 94 ~G~~~~~el~~~ 105 (113)
T cd02975 94 YGLPAGYEFASL 105 (113)
T ss_pred EecCchHHHHHH
Confidence 777655554443
No 50
>PTZ00102 disulphide isomerase; Provisional
Probab=99.63 E-value=2.1e-15 Score=142.23 Aligned_cols=100 Identities=16% Similarity=0.218 Sum_probs=86.1
Q ss_pred cccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCC--CCcEEEEEECCCChhHHHHhCCccCC
Q 025628 117 GISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN--KNVSFGIVDLGLFPNAAEKFGISLGG 194 (250)
Q Consensus 117 ~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~--~~v~f~~VDv~~~~~la~k~~I~~~~ 194 (250)
+.+..++.+++++.+ ++++. ++|.|||+||++|+++.|.+.+++.+++. .++.|++||++++++++++|+|.+
T Consensus 32 ~~v~~l~~~~f~~~i-~~~~~--~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~-- 106 (477)
T PTZ00102 32 EHVTVLTDSTFDKFI-TENEI--VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRG-- 106 (477)
T ss_pred CCcEEcchhhHHHHH-hcCCc--EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCc--
Confidence 567888999999998 66555 99999999999999999999999887753 369999999999999999999999
Q ss_pred CCCCCCEEEEEeCCeEEEeeeCCcCCCccccc
Q 025628 195 SMGQLPTYILFENNAEINRFPAFGFEEKFSHP 226 (250)
Q Consensus 195 ~~~~lPTlilf~~G~e~~r~~g~~~~g~i~~~ 226 (250)
+||+++|++|+.+ ++.|..+...+..|
T Consensus 107 ----~Pt~~~~~~g~~~-~y~g~~~~~~l~~~ 133 (477)
T PTZ00102 107 ----YPTIKFFNKGNPV-NYSGGRTADGIVSW 133 (477)
T ss_pred ----ccEEEEEECCceE-EecCCCCHHHHHHH
Confidence 9999999999887 88887555555444
No 51
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.60 E-value=7.9e-15 Score=106.03 Aligned_cols=87 Identities=26% Similarity=0.504 Sum_probs=75.7
Q ss_pred hHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEE
Q 025628 126 QLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILF 205 (250)
Q Consensus 126 ~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf 205 (250)
++++.+ +.++. ++|.||++||++|+.+.|.++++.++ .+++.++.+|+++.+++++++++.+ +||++++
T Consensus 2 ~~~~~~-~~~~~--~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~v~~------~P~~~~~ 70 (93)
T cd02947 2 EFEELI-KSAKP--VVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDENPELAEEYGVRS------IPTFLFF 70 (93)
T ss_pred chHHHH-hcCCc--EEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCCChhHHHhcCccc------ccEEEEE
Confidence 466667 44444 99999999999999999999999988 3489999999999999999999999 9999999
Q ss_pred eCCeEEEeeeCCcCCCcc
Q 025628 206 ENNAEINRFPAFGFEEKF 223 (250)
Q Consensus 206 ~~G~e~~r~~g~~~~g~i 223 (250)
++|+++.++.|..+.+++
T Consensus 71 ~~g~~~~~~~g~~~~~~l 88 (93)
T cd02947 71 KNGKEVDRVVGADPKEEL 88 (93)
T ss_pred ECCEEEEEEecCCCHHHH
Confidence 999999999987654443
No 52
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.60 E-value=3e-15 Score=140.35 Aligned_cols=87 Identities=17% Similarity=0.240 Sum_probs=75.3
Q ss_pred cccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh-hH-HHHhCCccCC
Q 025628 117 GISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-NA-AEKFGISLGG 194 (250)
Q Consensus 117 ~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~-~l-a~k~~I~~~~ 194 (250)
+.+..++.+++++.++..+++++|+|+|||+||++|+.+.|.++++++++++++++|++||++.++ .+ +++|+|.+
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~-- 428 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS-- 428 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc--
Confidence 467788999999998325566679999999999999999999999999998767999999999764 44 47899999
Q ss_pred CCCCCCEEEEEeCCe
Q 025628 195 SMGQLPTYILFENNA 209 (250)
Q Consensus 195 ~~~~lPTlilf~~G~ 209 (250)
+||+++|++|+
T Consensus 429 ----~PTii~Fk~g~ 439 (463)
T TIGR00424 429 ----FPTILFFPKHS 439 (463)
T ss_pred ----cceEEEEECCC
Confidence 99999999985
No 53
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.60 E-value=7.8e-14 Score=134.89 Aligned_cols=93 Identities=18% Similarity=0.293 Sum_probs=72.1
Q ss_pred cccC-ChhhHHHHHhc-CCCCceEEEEEecCCChhhHHHhhhH---HHHHHHcCCCCcEEEEEECCCC----hhHHHHhC
Q 025628 119 SNKL-TPLQLEALLTE-GKTSRYWLVEFRAQCSSTCIRASRIF---PELSIAYSNKNVSFGIVDLGLF----PNAAEKFG 189 (250)
Q Consensus 119 v~~l-~~~~l~~~l~~-~~k~~~vlV~FyA~WC~~C~~~~p~~---~~l~~~y~~~~v~f~~VDv~~~----~~la~k~~ 189 (250)
.+.+ +.+++++.+++ +.++|+++|+|||+||++|+.++|.. +++.++++ ++.++++|++++ .+++++|+
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~ 531 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYN 531 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcC
Confidence 4445 34668777732 23445699999999999999999874 66777774 689999999864 57889999
Q ss_pred CccCCCCCCCCEEEEEe-CCeEE--EeeeCCcC
Q 025628 190 ISLGGSMGQLPTYILFE-NNAEI--NRFPAFGF 219 (250)
Q Consensus 190 I~~~~~~~~lPTlilf~-~G~e~--~r~~g~~~ 219 (250)
+.+ +||+++|+ +|+++ .|..|..+
T Consensus 532 v~g------~Pt~~~~~~~G~~i~~~r~~G~~~ 558 (571)
T PRK00293 532 VLG------LPTILFFDAQGQEIPDARVTGFMD 558 (571)
T ss_pred CCC------CCEEEEECCCCCCcccccccCCCC
Confidence 999 99999997 78874 67777643
No 54
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.59 E-value=6e-15 Score=114.70 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=67.7
Q ss_pred ChhhHHHHHhcCCCCceEEEEEec-------CCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC-------hhHHHHh
Q 025628 123 TPLQLEALLTEGKTSRYWLVEFRA-------QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-------PNAAEKF 188 (250)
Q Consensus 123 ~~~~l~~~l~~~~k~~~vlV~FyA-------~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~-------~~la~k~ 188 (250)
+.+++++.+ ...++++++|+||| +||++|+.++|.++++.++++. +++|++||+++. ++++.++
T Consensus 8 ~~~~f~~~i-~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 8 GYEEFLKLL-KSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred CHHHHHHHH-HhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhHhcc
Confidence 345688888 54455569999999 9999999999999999999974 799999999874 5889999
Q ss_pred CCc-cCCCCCCCCEEEEEeCCe
Q 025628 189 GIS-LGGSMGQLPTYILFENNA 209 (250)
Q Consensus 189 ~I~-~~~~~~~lPTlilf~~G~ 209 (250)
+|. + +||++++++|+
T Consensus 86 ~I~~~------iPT~~~~~~~~ 101 (119)
T cd02952 86 KLTTG------VPTLLRWKTPQ 101 (119)
T ss_pred CcccC------CCEEEEEcCCc
Confidence 998 8 99999998775
No 55
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.59 E-value=5e-15 Score=115.62 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=71.7
Q ss_pred hhHHHHHhcCC-CCceEEEEEecCCChhhHHHhhhHH---HHHHHcCCCCcEEEEEECCCC-------------hhHHHH
Q 025628 125 LQLEALLTEGK-TSRYWLVEFRAQCSSTCIRASRIFP---ELSIAYSNKNVSFGIVDLGLF-------------PNAAEK 187 (250)
Q Consensus 125 ~~l~~~l~~~~-k~~~vlV~FyA~WC~~C~~~~p~~~---~l~~~y~~~~v~f~~VDv~~~-------------~~la~k 187 (250)
++++++. +++ +. ++|.|||+||++|+++.|.+. ++.+.++. ++.++.+|++.. .+++.+
T Consensus 4 ~~~~~a~-~~~~k~--vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 4 EDLAEAA-ADGKKP--LLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHH-HcCCCc--EEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 4466666 555 55 999999999999999999874 56666654 789999999865 678999
Q ss_pred hCCccCCCCCCCCEEEEEeC--CeEEEeeeCCcCCCc
Q 025628 188 FGISLGGSMGQLPTYILFEN--NAEINRFPAFGFEEK 222 (250)
Q Consensus 188 ~~I~~~~~~~~lPTlilf~~--G~e~~r~~g~~~~g~ 222 (250)
|+|.+ +||++++++ |+++.+.+|..+.+.
T Consensus 80 ~~v~~------~Pt~~~~~~~gg~~~~~~~G~~~~~~ 110 (125)
T cd02951 80 YRVRF------TPTVIFLDPEGGKEIARLPGYLPPDE 110 (125)
T ss_pred cCCcc------ccEEEEEcCCCCceeEEecCCCCHHH
Confidence 99999 999999985 599999999855443
No 56
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.59 E-value=1.9e-14 Score=135.97 Aligned_cols=96 Identities=19% Similarity=0.366 Sum_probs=80.2
Q ss_pred ccCChh-hHHHHHhcCCCCceEEEEEecCCChhhHHHhhh-HHHHHHHcCCCCcEEEEEECCCCh----hHHHHhCCccC
Q 025628 120 NKLTPL-QLEALLTEGKTSRYWLVEFRAQCSSTCIRASRI-FPELSIAYSNKNVSFGIVDLGLFP----NAAEKFGISLG 193 (250)
Q Consensus 120 ~~l~~~-~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~-~~~l~~~y~~~~v~f~~VDv~~~~----~la~k~~I~~~ 193 (250)
+.+++. ++++.+ .+++.|+|+|||||+||..||.+++. +.+...+.+.+++...++|+++++ ++.++||+-+
T Consensus 457 q~~s~~~~L~~~l-a~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G- 534 (569)
T COG4232 457 QPISPLAELDQAL-AEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG- 534 (569)
T ss_pred hccCCHHHHHHHH-HhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC-
Confidence 566665 799999 77776779999999999999999998 577777777789999999999764 4678999999
Q ss_pred CCCCCCCEEEEEe-CCeEEEeeeCCcCCCc
Q 025628 194 GSMGQLPTYILFE-NNAEINRFPAFGFEEK 222 (250)
Q Consensus 194 ~~~~~lPTlilf~-~G~e~~r~~g~~~~g~ 222 (250)
+|++++|+ +|+|..-.+|..+.+.
T Consensus 535 -----~P~~~ff~~~g~e~~~l~gf~~a~~ 559 (569)
T COG4232 535 -----VPTYLFFGPQGSEPEILTGFLTADA 559 (569)
T ss_pred -----CCEEEEECCCCCcCcCCcceecHHH
Confidence 99999998 8887777777744433
No 57
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.7e-15 Score=140.36 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=88.9
Q ss_pred cccccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCC--CcEEEEEECCCChhHHHHhCCcc
Q 025628 115 KLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK--NVSFGIVDLGLFPNAAEKFGISL 192 (250)
Q Consensus 115 ~~~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~--~v~f~~VDv~~~~~la~k~~I~~ 192 (250)
..+.+..++.++|++.+ ..+.- ++|+||||||++|++++|.+++.+...+.. .++.++||++++.++|.+|+|.+
T Consensus 23 ~~~~Vl~Lt~dnf~~~i-~~~~~--vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~g 99 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETI-NGHEF--VLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRG 99 (493)
T ss_pred cccceEEEecccHHHHh-ccCce--EEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCC
Confidence 35678889999999999 65555 999999999999999999999999888754 89999999999999999999999
Q ss_pred CCCCCCCCEEEEEeCCeEEEeeeCCcCCCccccc
Q 025628 193 GGSMGQLPTYILFENNAEINRFPAFGFEEKFSHP 226 (250)
Q Consensus 193 ~~~~~~lPTlilf~~G~e~~r~~g~~~~g~i~~~ 226 (250)
+||+-+|+||+....+.|......|+.|
T Consensus 100 ------yPTlkiFrnG~~~~~Y~G~r~adgIv~w 127 (493)
T KOG0190|consen 100 ------YPTLKIFRNGRSAQDYNGPREADGIVKW 127 (493)
T ss_pred ------CCeEEEEecCCcceeccCcccHHHHHHH
Confidence 9999999999986677776555555544
No 58
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.58 E-value=1.5e-14 Score=112.27 Aligned_cols=102 Identities=10% Similarity=0.097 Sum_probs=77.1
Q ss_pred HHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh-hHHHHhCCccCCCCCCCCEEEEE
Q 025628 127 LEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-NAAEKFGISLGGSMGQLPTYILF 205 (250)
Q Consensus 127 l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~-~la~k~~I~~~~~~~~lPTlilf 205 (250)
++... .++++ ++|+|||+||++|+.+.|.+.+..+.+.. +..|+.+|++.++ ...++|++.+ +.+||++++
T Consensus 12 l~~A~-~~~kp--VlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~~~~~~~~~~~g----~~vPt~~f~ 83 (117)
T cd02959 12 IKEAK-DSGKP--LMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDEEPKDEEFSPDG----GYIPRILFL 83 (117)
T ss_pred HHHHH-HcCCc--EEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCCCchhhhcccCC----CccceEEEE
Confidence 43333 44555 99999999999999999999887776543 5578888888765 4567888764 239999999
Q ss_pred e-CCeEEEeeeCCcCCCccccccccHHHHhhh
Q 025628 206 E-NNAEINRFPAFGFEEKFSHPHITKKLIAHH 236 (250)
Q Consensus 206 ~-~G~e~~r~~g~~~~g~i~~~~~~~~~i~~~ 236 (250)
+ +|+++.|+.+.....+...|.-.-+++...
T Consensus 84 ~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~~ 115 (117)
T cd02959 84 DPSGDVHPEIINKKGNPNYKYFYSSAAQVTES 115 (117)
T ss_pred CCCCCCchhhccCCCCccccccCCCHHHHHhh
Confidence 6 999999988887777777776655555443
No 59
>PLN02309 5'-adenylylsulfate reductase
Probab=99.57 E-value=1.1e-14 Score=136.48 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=77.5
Q ss_pred ccccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC-CChhHHH-HhCCccC
Q 025628 116 LGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG-LFPNAAE-KFGISLG 193 (250)
Q Consensus 116 ~~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~-~~~~la~-k~~I~~~ 193 (250)
.+.+..++++++++.++..+.+++|+|+|||+||++|+.+.|.+++++++++..+++|+++|++ .+.+++. +|+|.+
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~- 422 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS- 422 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce-
Confidence 3467888999999988445566679999999999999999999999999998778999999999 7788886 699999
Q ss_pred CCCCCCCEEEEEeCCe
Q 025628 194 GSMGQLPTYILFENNA 209 (250)
Q Consensus 194 ~~~~~lPTlilf~~G~ 209 (250)
+||+++|++|.
T Consensus 423 -----~PTil~f~~g~ 433 (457)
T PLN02309 423 -----FPTILLFPKNS 433 (457)
T ss_pred -----eeEEEEEeCCC
Confidence 99999999875
No 60
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.57 E-value=7.9e-15 Score=137.17 Aligned_cols=100 Identities=19% Similarity=0.247 Sum_probs=86.7
Q ss_pred ccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCC--CcEEEEEECCCChhHHHHhCCccCCC
Q 025628 118 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK--NVSFGIVDLGLFPNAAEKFGISLGGS 195 (250)
Q Consensus 118 ~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~--~v~f~~VDv~~~~~la~k~~I~~~~~ 195 (250)
.+..++++++++.+ ++++. ++|.|||+||++|+++.|.+.++++++... ++.|++||++++++++++++|.+
T Consensus 2 ~v~~l~~~~~~~~i-~~~~~--~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--- 75 (462)
T TIGR01130 2 DVLVLTKDNFDDFI-KSHEF--VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSG--- 75 (462)
T ss_pred CceECCHHHHHHHH-hcCCC--EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcc---
Confidence 45678889999999 66555 999999999999999999999998887643 49999999999999999999999
Q ss_pred CCCCCEEEEEeCCeE-EEeeeCCcCCCccccc
Q 025628 196 MGQLPTYILFENNAE-INRFPAFGFEEKFSHP 226 (250)
Q Consensus 196 ~~~lPTlilf~~G~e-~~r~~g~~~~g~i~~~ 226 (250)
+||+++|++|+. +.++.|..+...+.+|
T Consensus 76 ---~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~ 104 (462)
T TIGR01130 76 ---YPTLKIFRNGEDSVSDYNGPRDADGIVKY 104 (462)
T ss_pred ---ccEEEEEeCCccceeEecCCCCHHHHHHH
Confidence 999999999988 7888887666655554
No 61
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.55 E-value=7.8e-15 Score=113.36 Aligned_cols=85 Identities=13% Similarity=0.168 Sum_probs=69.6
Q ss_pred cccCChhhHHHHHhcCCCCceEEEEEec--CCCh---hhHHHhhhHHHHHHHcCCCCcEEEEEEC-----CCChhHHHHh
Q 025628 119 SNKLTPLQLEALLTEGKTSRYWLVEFRA--QCSS---TCIRASRIFPELSIAYSNKNVSFGIVDL-----GLFPNAAEKF 188 (250)
Q Consensus 119 v~~l~~~~l~~~l~~~~k~~~vlV~FyA--~WC~---~C~~~~p~~~~l~~~y~~~~v~f~~VDv-----~~~~~la~k~ 188 (250)
+..+++.+|++.+ ++++. +||.||| |||+ +|++++|.+++.+. .+.+++||+ +++.+++++|
T Consensus 3 ~v~L~~~nF~~~v-~~~~~--vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-----~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 3 CVDLDTVTFYKVI-PKFKY--SLVKFDTAYPYGEKHEAFTRLAESSASATD-----DLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred eeECChhhHHHHH-hcCCc--EEEEEeCCCCCCCChHHHHHHHHHHHhhcC-----ceEEEEEecccccchhhHHHHHHh
Confidence 4578999999999 77766 9999999 9998 77777777765554 489999999 4678899999
Q ss_pred CCc--cCCCCCCCCEEEEEeCCe--EEEeeeCC
Q 025628 189 GIS--LGGSMGQLPTYILFENNA--EINRFPAF 217 (250)
Q Consensus 189 ~I~--~~~~~~~lPTlilf~~G~--e~~r~~g~ 217 (250)
+|+ + +||+.+|++|+ +...+.|.
T Consensus 75 ~I~~~g------yPTl~lF~~g~~~~~~~Y~G~ 101 (116)
T cd03007 75 KLDKES------YPVIYLFHGGDFENPVPYSGA 101 (116)
T ss_pred CCCcCC------CCEEEEEeCCCcCCCccCCCC
Confidence 999 8 99999999985 44556554
No 62
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.54 E-value=5e-15 Score=129.37 Aligned_cols=101 Identities=21% Similarity=0.359 Sum_probs=78.1
Q ss_pred ccccccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCC--CcEEEEEECCCChhHHHHhCCc
Q 025628 114 QKLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK--NVSFGIVDLGLFPNAAEKFGIS 191 (250)
Q Consensus 114 ~~~~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~--~v~f~~VDv~~~~~la~k~~I~ 191 (250)
.+|..+..++ +..++......|+|+||||||++|++++|+|.+...+.++. .+++++.|++++|.+|.+++|+
T Consensus 25 kgpt~VeDLd-----dkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiq 99 (468)
T KOG4277|consen 25 KGPTAVEDLD-----DKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQ 99 (468)
T ss_pred CCchhhhhhh-----HHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccC
Confidence 4455555443 33323334456999999999999999999999998877653 5899999999999999999999
Q ss_pred cCCCCCCCCEEEEEeCCeEEEeeeCCcCCCccccc
Q 025628 192 LGGSMGQLPTYILFENNAEINRFPAFGFEEKFSHP 226 (250)
Q Consensus 192 ~~~~~~~lPTlilf~~G~e~~r~~g~~~~g~i~~~ 226 (250)
+ +||+.+|++|..+..+.|- .+..++.|
T Consensus 100 G------YPTIk~~kgd~a~dYRG~R-~Kd~iieF 127 (468)
T KOG4277|consen 100 G------YPTIKFFKGDHAIDYRGGR-EKDAIIEF 127 (468)
T ss_pred C------CceEEEecCCeeeecCCCc-cHHHHHHH
Confidence 9 9999999999887766654 34444433
No 63
>PTZ00102 disulphide isomerase; Provisional
Probab=99.52 E-value=3e-14 Score=134.43 Aligned_cols=103 Identities=16% Similarity=0.213 Sum_probs=85.6
Q ss_pred ccccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCC-CCcEEEEEECCCChhHHHHhCCccCC
Q 025628 116 LGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN-KNVSFGIVDLGLFPNAAEKFGISLGG 194 (250)
Q Consensus 116 ~~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~-~~v~f~~VDv~~~~~la~k~~I~~~~ 194 (250)
.+.+..++++++++.+.++++. ++|+|||+||++|+.++|.+++++++++. +.+.++++|++.++..++++++.+
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~k~--vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~-- 431 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSDKD--VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSA-- 431 (477)
T ss_pred CCCeEEecccchHHHHhcCCCC--EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcc--
Confidence 3457788889999886355555 99999999999999999999999998875 468999999999999999999999
Q ss_pred CCCCCCEEEEEeCCeEE-EeeeCCcCCCccccc
Q 025628 195 SMGQLPTYILFENNAEI-NRFPAFGFEEKFSHP 226 (250)
Q Consensus 195 ~~~~lPTlilf~~G~e~-~r~~g~~~~g~i~~~ 226 (250)
+||+++|++|+.+ .++.|..+...+..|
T Consensus 432 ----~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~ 460 (477)
T PTZ00102 432 ----FPTILFVKAGERTPIPYEGERTVEGFKEF 460 (477)
T ss_pred ----cCeEEEEECCCcceeEecCcCCHHHHHHH
Confidence 9999999988765 477776555554443
No 64
>PTZ00062 glutaredoxin; Provisional
Probab=99.50 E-value=9.2e-14 Score=117.61 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=69.3
Q ss_pred ChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEE
Q 025628 123 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTY 202 (250)
Q Consensus 123 ~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTl 202 (250)
+.+++++.+ +++++ ..++.|||+||++|+.+.|.+.+++++|. +++|++||.+ |+|.+ +||+
T Consensus 5 ~~ee~~~~i-~~~~g-~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d--------~~V~~------vPtf 66 (204)
T PTZ00062 5 KKEEKDKLI-ESNTG-KLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA--------DANNE------YGVF 66 (204)
T ss_pred CHHHHHHHH-hcCCC-cEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc--------cCccc------ceEE
Confidence 456788888 54423 27999999999999999999999999995 7999999977 99999 9999
Q ss_pred EEEeCCeEEEeeeCCcC
Q 025628 203 ILFENNAEINRFPAFGF 219 (250)
Q Consensus 203 ilf~~G~e~~r~~g~~~ 219 (250)
++|++|+++.|+.|.++
T Consensus 67 v~~~~g~~i~r~~G~~~ 83 (204)
T PTZ00062 67 EFYQNSQLINSLEGCNT 83 (204)
T ss_pred EEEECCEEEeeeeCCCH
Confidence 99999999999999853
No 65
>PHA02125 thioredoxin-like protein
Probab=99.45 E-value=5.6e-13 Score=95.24 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=56.5
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeCCcCC
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFE 220 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g~~~~ 220 (250)
++.|||+||++|+.+.|.++++. +.+++||.++.++++++|+|.+ +||++ +|+.+.+..|.+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~~~l~~~~~v~~------~PT~~---~g~~~~~~~G~~~~ 65 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEGVELTAKHHIRS------LPTLV---NTSTLDRFTGVPRN 65 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCCHHHHHHcCCce------eCeEE---CCEEEEEEeCCCCc
Confidence 68999999999999999997653 4688999999999999999999 99987 78888999998543
No 66
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.43 E-value=3.8e-13 Score=114.88 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=68.0
Q ss_pred EEEEEec---CCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEE-eee
Q 025628 140 WLVEFRA---QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEIN-RFP 215 (250)
Q Consensus 140 vlV~FyA---~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~-r~~ 215 (250)
.++.|++ +||++|+.+.|.++++++++..-.+.++.+|.+++++++++|+|.+ +||+++|++|+++. |+.
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~------~Pt~~~f~~g~~~~~~~~ 95 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVER------VPTTIILEEGKDGGIRYT 95 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCc------cCEEEEEeCCeeeEEEEe
Confidence 4666888 9999999999999999999853235567777779999999999999 99999999999984 999
Q ss_pred CCcCCCccccc
Q 025628 216 AFGFEEKFSHP 226 (250)
Q Consensus 216 g~~~~g~i~~~ 226 (250)
|..+..++.++
T Consensus 96 G~~~~~~l~~~ 106 (215)
T TIGR02187 96 GIPAGYEFAAL 106 (215)
T ss_pred ecCCHHHHHHH
Confidence 98776665444
No 67
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.43 E-value=4.1e-13 Score=96.55 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=61.2
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeCCcCC
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFE 220 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g~~~~ 220 (250)
+.-||++||++|+.+.|.+++++++++. ++.+.+||++++++++++||+.+ +||+++ +|+ .+..|..+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~------vPt~~~--~g~--~~~~G~~~~ 71 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMENPQKAMEYGIMA------VPAIVI--NGD--VEFIGAPTK 71 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccCHHHHHHcCCcc------CCEEEE--CCE--EEEecCCCH
Confidence 5679999999999999999999999875 69999999999999999999999 999986 676 367776444
Q ss_pred Cc
Q 025628 221 EK 222 (250)
Q Consensus 221 g~ 222 (250)
++
T Consensus 72 ~~ 73 (82)
T TIGR00411 72 EE 73 (82)
T ss_pred HH
Confidence 33
No 68
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.42 E-value=3.7e-13 Score=100.95 Aligned_cols=68 Identities=22% Similarity=0.281 Sum_probs=62.4
Q ss_pred ceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCc--cCCCCCCCCEEEEEeC--CeEEE
Q 025628 138 RYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGIS--LGGSMGQLPTYILFEN--NAEIN 212 (250)
Q Consensus 138 ~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~--~~~~~~~lPTlilf~~--G~e~~ 212 (250)
+++++.|+++||++|+.+.|.+.++++++++ ++.|+.+|+++++++++.+|+. + +||++++++ |+...
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~~~~~~~~~i~~~~------~P~~~~~~~~~~~k~~ 84 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDFGRHLEYFGLKEED------LPVIAIINLSDGKKYL 84 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhhHHHHHHcCCChhh------CCEEEEEecccccccC
Confidence 3499999999999999999999999999986 7999999999999999999999 7 999999998 65443
No 69
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.6e-13 Score=125.48 Aligned_cols=91 Identities=18% Similarity=0.262 Sum_probs=75.0
Q ss_pred cccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCC-CcEEEEEECCCChhHHHHhCCccCCC
Q 025628 117 GISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK-NVSFGIVDLGLFPNAAEKFGISLGGS 195 (250)
Q Consensus 117 ~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~-~v~f~~VDv~~~~~la~k~~I~~~~~ 195 (250)
+.|+.+.++++++.+.+.+|+ |||+||||||++|++++|++++|++.|++. ++.++++|.+.+.-.. .++++
T Consensus 366 ~pVkvvVgknfd~iv~de~Kd--VLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~--~~~~~--- 438 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKD--VLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPS--LKVDG--- 438 (493)
T ss_pred CCeEEEeecCHHHHhhccccc--eEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCcc--ccccc---
Confidence 568899999999998677777 999999999999999999999999999874 8999999998765333 45667
Q ss_pred CCCCCEEEEEeCCe--EEEeeeCC
Q 025628 196 MGQLPTYILFENNA--EINRFPAF 217 (250)
Q Consensus 196 ~~~lPTlilf~~G~--e~~r~~g~ 217 (250)
.||+.++..|. ....+.|-
T Consensus 439 ---fPTI~~~pag~k~~pv~y~g~ 459 (493)
T KOG0190|consen 439 ---FPTILFFPAGHKSNPVIYNGD 459 (493)
T ss_pred ---cceEEEecCCCCCCCcccCCC
Confidence 99999998776 23444444
No 70
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.39 E-value=1.9e-12 Score=104.13 Aligned_cols=72 Identities=15% Similarity=0.295 Sum_probs=57.2
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCC-------CCcEEEEEECCCCh-------------------------h
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN-------KNVSFGIVDLGLFP-------------------------N 183 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~-------~~v~f~~VDv~~~~-------------------------~ 183 (250)
++++++|+|||+|||+|+++.|.+.++.++++. +++.++.|+.++.. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 556699999999999999999999998876643 36899999987532 3
Q ss_pred HHHHhCCccCCCCCCCCEEEEEe-CCeEEEe
Q 025628 184 AAEKFGISLGGSMGQLPTYILFE-NNAEINR 213 (250)
Q Consensus 184 la~k~~I~~~~~~~~lPTlilf~-~G~e~~r 213 (250)
++++|++.+ +||.++++ +|+.+.+
T Consensus 104 l~~~y~v~~------iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEE------LPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCC------CCEEEEECCCCcEEee
Confidence 556777777 99999987 7776655
No 71
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.38 E-value=4.1e-12 Score=99.59 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=69.0
Q ss_pred hhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhh-H--HHHHHHcCCCCcEEEEEECCCChhHHHH--------hCCcc
Q 025628 124 PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRI-F--PELSIAYSNKNVSFGIVDLGLFPNAAEK--------FGISL 192 (250)
Q Consensus 124 ~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~-~--~~l~~~y~~~~v~f~~VDv~~~~~la~k--------~~I~~ 192 (250)
++.++++. +++|+ ++|+|+|+||++|+.+++. + .++.+.... ++.++++|+++.++++++ ||+.+
T Consensus 5 ~eal~~Ak-~~~Kp--Vll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 5 EEAFEKAR-REDKP--IFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred HHHHHHHH-HcCCe--EEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC
Confidence 44566666 66666 9999999999999999874 4 356665543 899999999999887764 47888
Q ss_pred CCCCCCCCEEEEEe-CCeEEEeeeCCcCCCc
Q 025628 193 GGSMGQLPTYILFE-NNAEINRFPAFGFEEK 222 (250)
Q Consensus 193 ~~~~~~lPTlilf~-~G~e~~r~~g~~~~g~ 222 (250)
+||+++++ +|+++.+..++....+
T Consensus 81 ------~Pt~vfl~~~G~~~~~~~~~~~~~~ 105 (124)
T cd02955 81 ------WPLNVFLTPDLKPFFGGTYFPPEDR 105 (124)
T ss_pred ------CCEEEEECCCCCEEeeeeecCCCCc
Confidence 99999996 7999987777655444
No 72
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.37 E-value=1.7e-12 Score=93.13 Aligned_cols=62 Identities=10% Similarity=0.121 Sum_probs=53.6
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeCC
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAF 217 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g~ 217 (250)
|+|||+||++|+.+.|.++++.++++. .+.+.++| +++.+.++|+.+ +||+++ ||+++ ..|.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~---~~~~a~~~~v~~------vPti~i--~G~~~--~~G~ 64 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVT---DMNEILEAGVTA------TPGVAV--DGELV--IMGK 64 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeC---CHHHHHHcCCCc------CCEEEE--CCEEE--EEec
Confidence 789999999999999999999999975 68887777 466688999999 999999 88877 4453
No 73
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.37 E-value=2.1e-12 Score=122.75 Aligned_cols=85 Identities=12% Similarity=0.070 Sum_probs=69.7
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEE----------------------------CCCChhHHHH
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVD----------------------------LGLFPNAAEK 187 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VD----------------------------v~~~~~la~k 187 (250)
++++++|+|||+||++|+++.|.+++++++++.+++.++.|. +|....+++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 566799999999999999999999999999986677776654 3445668889
Q ss_pred hCCccCCCCCCCCEEEEE-eCCeEEEeeeCCcCCCccccc
Q 025628 188 FGISLGGSMGQLPTYILF-ENNAEINRFPAFGFEEKFSHP 226 (250)
Q Consensus 188 ~~I~~~~~~~~lPTlilf-~~G~e~~r~~g~~~~g~i~~~ 226 (250)
|+|.+ +||.+++ ++|+.+.+..|..+...+..+
T Consensus 135 fgV~g------iPTt~IIDkdGkIV~~~~G~~~~eeL~a~ 168 (521)
T PRK14018 135 LNISV------YPSWAIIGKDGDVQRIVKGSISEAQALAL 168 (521)
T ss_pred cCCCC------cCeEEEEcCCCeEEEEEeCCCCHHHHHHH
Confidence 99999 9999666 689999999998766555443
No 74
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.36 E-value=3.7e-12 Score=99.98 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=58.8
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCC--CcEEEEEECCCC------------------------hhHHHHhC
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK--NVSFGIVDLGLF------------------------PNAAEKFG 189 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~--~v~f~~VDv~~~------------------------~~la~k~~ 189 (250)
++++++|+|||+||++|+++.|.+.++.+++..+ +++++.+++++. ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 3455999999999999999999999998888643 688888887744 24677899
Q ss_pred CccCCCCCCCCEEEEEe-CCeEEEe
Q 025628 190 ISLGGSMGQLPTYILFE-NNAEINR 213 (250)
Q Consensus 190 I~~~~~~~~lPTlilf~-~G~e~~r 213 (250)
|.+ +||+++++ +|+.+.+
T Consensus 97 v~~------~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEG------IPTLIILDADGEVVTT 115 (131)
T ss_pred CCC------CCEEEEECCCCCEEcc
Confidence 998 99999997 7776654
No 75
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.35 E-value=4.1e-12 Score=100.16 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=59.0
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCC--CcEEEEEECCCCh-------------------------hHHHHh
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK--NVSFGIVDLGLFP-------------------------NAAEKF 188 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~--~v~f~~VDv~~~~-------------------------~la~k~ 188 (250)
++++++|+|||+||++|+++.|.++++.++++.+ ++.++.|+++..+ .+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3456999999999999999999999999988764 6888888877543 345678
Q ss_pred CCccCCCCCCCCEEEEEe-CCeEEEee
Q 025628 189 GISLGGSMGQLPTYILFE-NNAEINRF 214 (250)
Q Consensus 189 ~I~~~~~~~~lPTlilf~-~G~e~~r~ 214 (250)
+|.+ +||.++++ +|+.+.+.
T Consensus 96 ~v~~------iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 96 KVEG------IPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCC------CCEEEEECCCCCEEchh
Confidence 9988 99999997 67666543
No 76
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.35 E-value=1.7e-12 Score=121.42 Aligned_cols=93 Identities=18% Similarity=0.265 Sum_probs=75.2
Q ss_pred cccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCC-C-CcEEEEEECCCChhHHHHhCCccCC
Q 025628 117 GISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN-K-NVSFGIVDLGLFPNAAEKFGISLGG 194 (250)
Q Consensus 117 ~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~-~-~v~f~~VDv~~~~~la~k~~I~~~~ 194 (250)
..+..++++++++.+.+.++. ++|.|||+||++|+.+.|.+++++++++. + ++.|+++|++.+.... ++|.+
T Consensus 346 ~~v~~l~~~~f~~~v~~~~~~--vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~--~~i~~-- 419 (462)
T TIGR01130 346 GPVKVLVGKNFDEIVLDETKD--VLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPP--FEVEG-- 419 (462)
T ss_pred CccEEeeCcCHHHHhccCCCe--EEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCC--CCccc--
Confidence 456778888999887344444 99999999999999999999999999986 3 7999999999765333 89999
Q ss_pred CCCCCCEEEEEeCCeEE--EeeeCCcC
Q 025628 195 SMGQLPTYILFENNAEI--NRFPAFGF 219 (250)
Q Consensus 195 ~~~~lPTlilf~~G~e~--~r~~g~~~ 219 (250)
+||+++|++|+.. .++.|..+
T Consensus 420 ----~Pt~~~~~~~~~~~~~~~~g~~~ 442 (462)
T TIGR01130 420 ----FPTIKFVPAGKKSEPVPYDGDRT 442 (462)
T ss_pred ----cCEEEEEeCCCCcCceEecCcCC
Confidence 9999999988753 45555433
No 77
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.32 E-value=1.1e-11 Score=96.56 Aligned_cols=77 Identities=12% Similarity=0.095 Sum_probs=60.5
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEEC-----------------------CCChhHHHHhCCcc
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDL-----------------------GLFPNAAEKFGISL 192 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv-----------------------~~~~~la~k~~I~~ 192 (250)
++++++|+|||+||++|+++.|.++++++++ +++++.|+. |....+++.|++.+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~ 100 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG 100 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC
Confidence 3456999999999999999999999998876 377776664 33445677788887
Q ss_pred CCCCCCCCEEEEE-eCCeEEEeeeCCcCCC
Q 025628 193 GGSMGQLPTYILF-ENNAEINRFPAFGFEE 221 (250)
Q Consensus 193 ~~~~~~lPTlilf-~~G~e~~r~~g~~~~g 221 (250)
+|+.+++ ++|+.+.+..|..++.
T Consensus 101 ------~P~~~~ld~~G~v~~~~~G~~~~~ 124 (127)
T cd03010 101 ------VPETFLIDGDGIIRYKHVGPLTPE 124 (127)
T ss_pred ------CCeEEEECCCceEEEEEeccCChH
Confidence 9965555 5999999999875543
No 78
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.31 E-value=7.5e-12 Score=106.92 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=70.5
Q ss_pred cCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCC
Q 025628 121 KLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLP 200 (250)
Q Consensus 121 ~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lP 200 (250)
.++++..+.+- +.+++ ..++.|||+||++|+.+.|.+++++.++ +++++.++|.+++++++++|+|.+ +|
T Consensus 119 ~L~~~~~~~l~-~~~~p-v~I~~F~a~~C~~C~~~~~~l~~l~~~~--~~i~~~~vD~~~~~~~~~~~~V~~------vP 188 (215)
T TIGR02187 119 GLSEKTVELLQ-SLDEP-VRIEVFVTPTCPYCPYAVLMAHKFALAN--DKILGEMIEANENPDLAEKYGVMS------VP 188 (215)
T ss_pred CCCHHHHHHHH-hcCCC-cEEEEEECCCCCCcHHHHHHHHHHHHhc--CceEEEEEeCCCCHHHHHHhCCcc------CC
Confidence 44444343333 33334 2455699999999999999999999875 379999999999999999999999 99
Q ss_pred EEEEEeCCeEEEeeeCCcCCCcccc
Q 025628 201 TYILFENNAEINRFPAFGFEEKFSH 225 (250)
Q Consensus 201 Tlilf~~G~e~~r~~g~~~~g~i~~ 225 (250)
|++++++|++ +.|..+..++..
T Consensus 189 tl~i~~~~~~---~~G~~~~~~l~~ 210 (215)
T TIGR02187 189 KIVINKGVEE---FVGAYPEEQFLE 210 (215)
T ss_pred EEEEecCCEE---EECCCCHHHHHH
Confidence 9999988864 777765444433
No 79
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.30 E-value=5.1e-11 Score=96.73 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=53.8
Q ss_pred eEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC------------hhHH-HHh---CCccCCCCCCCCEE
Q 025628 139 YWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF------------PNAA-EKF---GISLGGSMGQLPTY 202 (250)
Q Consensus 139 ~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~------------~~la-~k~---~I~~~~~~~~lPTl 202 (250)
..+|+|||+||++|+++.|.+++++++| ++.++.|+++.. ++.. +.| ++.+ +||.
T Consensus 52 ~~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~------iPTt 122 (153)
T TIGR02738 52 YALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVV------TPAT 122 (153)
T ss_pred CEEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCC------CCeE
Confidence 3799999999999999999999999998 466777776643 2222 334 6777 9999
Q ss_pred EEEe-CCeE-EEeeeCCcC
Q 025628 203 ILFE-NNAE-INRFPAFGF 219 (250)
Q Consensus 203 ilf~-~G~e-~~r~~g~~~ 219 (250)
++++ +|+. ..+..|..+
T Consensus 123 ~LID~~G~~i~~~~~G~~s 141 (153)
T TIGR02738 123 FLVNVNTRKAYPVLQGAVD 141 (153)
T ss_pred EEEeCCCCEEEEEeecccC
Confidence 9996 5665 446777643
No 80
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.29 E-value=2.2e-11 Score=90.04 Aligned_cols=66 Identities=26% Similarity=0.409 Sum_probs=54.3
Q ss_pred ceEEEEEecCCChhhHHHhhhHHHHHHHcC-CCCcEEEEEECCCCh-------------------------hHHHHhCCc
Q 025628 138 RYWLVEFRAQCSSTCIRASRIFPELSIAYS-NKNVSFGIVDLGLFP-------------------------NAAEKFGIS 191 (250)
Q Consensus 138 ~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~-~~~v~f~~VDv~~~~-------------------------~la~k~~I~ 191 (250)
++++|+|||+||++|+++.|.+.++.++|+ .+++.++.|+.++.. .+.++|+|.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 81 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN 81 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence 569999999999999999999999999999 568999999998542 366788999
Q ss_pred cCCCCCCCCEEEEEeCCe
Q 025628 192 LGGSMGQLPTYILFENNA 209 (250)
Q Consensus 192 ~~~~~~~lPTlilf~~G~ 209 (250)
+ +|+++++++.+
T Consensus 82 ~------iP~~~lld~~G 93 (95)
T PF13905_consen 82 G------IPTLVLLDPDG 93 (95)
T ss_dssp S------SSEEEEEETTS
T ss_pred c------CCEEEEECCCC
Confidence 9 99999997543
No 81
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.29 E-value=1e-11 Score=109.78 Aligned_cols=79 Identities=13% Similarity=0.128 Sum_probs=63.0
Q ss_pred CCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC-----------ChhHHHHhCCccCCCCCCCCEEE
Q 025628 135 KTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-----------FPNAAEKFGISLGGSMGQLPTYI 203 (250)
Q Consensus 135 ~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~-----------~~~la~k~~I~~~~~~~~lPTli 203 (250)
-++++++|+|||+||++|+.+.|++++++++| ++.+..|++|. +..+++++||.+ +||++
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~------vPtl~ 234 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT------VPAVF 234 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCccccCCcccCCHHHHHHcCCCc------CCeEE
Confidence 34566999999999999999999999999998 46777777765 346889999999 99999
Q ss_pred EEeC-CeEEEee-eCCcCCCc
Q 025628 204 LFEN-NAEINRF-PAFGFEEK 222 (250)
Q Consensus 204 lf~~-G~e~~r~-~g~~~~g~ 222 (250)
++++ |+.+.+. .|..+...
T Consensus 235 Lv~~~~~~v~~v~~G~~s~~e 255 (271)
T TIGR02740 235 LADPDPNQFTPIGFGVMSADE 255 (271)
T ss_pred EEECCCCEEEEEEeCCCCHHH
Confidence 9986 6666543 36544333
No 82
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.27 E-value=2.4e-11 Score=84.33 Aligned_cols=59 Identities=20% Similarity=0.429 Sum_probs=52.7
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCe
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNA 209 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~ 209 (250)
++.|+++|||+|+++.|.++++++.+ +++.+..+|+++++++++++|+.+ +||+++ +|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~~~~~l~~~~~i~~------vPti~i--~~~ 61 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN--PNISAEMIDAAEFPDLADEYGVMS------VPAIVI--NGK 61 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcccCHhHHHHcCCcc------cCEEEE--CCE
Confidence 56799999999999999999998765 379999999999999999999999 999866 454
No 83
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.27 E-value=3e-11 Score=90.46 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=65.2
Q ss_pred CceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC-----------------------hhHHHHhCCccC
Q 025628 137 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-----------------------PNAAEKFGISLG 193 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~-----------------------~~la~k~~I~~~ 193 (250)
++++++.||++||++|+...+.+.++..+++.+++.++.|+++.. ..+++.|++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG- 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc-
Confidence 456999999999999999999999999999867899999999986 67888999988
Q ss_pred CCCCCCCEEEEEe-CCeEEEeeeC
Q 025628 194 GSMGQLPTYILFE-NNAEINRFPA 216 (250)
Q Consensus 194 ~~~~~lPTlilf~-~G~e~~r~~g 216 (250)
+|++++++ +|+.+.++.|
T Consensus 98 -----~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 -----LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred -----cceEEEECCCCcEEEEecC
Confidence 99998886 7877777654
No 84
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.26 E-value=9.3e-12 Score=109.07 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=70.9
Q ss_pred ChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHc----CCCCcEEEEEECCCChhHHHHhCCccCCCCCC
Q 025628 123 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAY----SNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQ 198 (250)
Q Consensus 123 ~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y----~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~ 198 (250)
+.++++..+ +. ...++|.|||+||+-++.+.|+|++.++.+ ...++.+++||+++..+++.||.|+.
T Consensus 2 t~~N~~~il-~s--~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~K------ 72 (375)
T KOG0912|consen 2 TSENIDSIL-DS--NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINK------ 72 (375)
T ss_pred ccccHHHhh-cc--ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhcccc------
Confidence 446678888 55 445999999999999999999999887755 44578999999999999999999999
Q ss_pred CCEEEEEeCCeEEEe
Q 025628 199 LPTYILFENNAEINR 213 (250)
Q Consensus 199 lPTlilf~~G~e~~r 213 (250)
+||+-+|+||....|
T Consensus 73 yPTlKvfrnG~~~~r 87 (375)
T KOG0912|consen 73 YPTLKVFRNGEMMKR 87 (375)
T ss_pred Cceeeeeeccchhhh
Confidence 999999999987763
No 85
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.24 E-value=6.1e-12 Score=95.79 Aligned_cols=81 Identities=14% Similarity=0.278 Sum_probs=60.5
Q ss_pred CCCceEEEEEecCCChhhHHHhhhHHH---HHHHcCCCCcEEEEEECCCC--------------------hhHHHHhCCc
Q 025628 135 KTSRYWLVEFRAQCSSTCIRASRIFPE---LSIAYSNKNVSFGIVDLGLF--------------------PNAAEKFGIS 191 (250)
Q Consensus 135 ~k~~~vlV~FyA~WC~~C~~~~p~~~~---l~~~y~~~~v~f~~VDv~~~--------------------~~la~k~~I~ 191 (250)
++++++++.|+++|||.|+++.+.+.+ +...++. ++.++.++++.. +++++++||.
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 345669999999999999999999875 4444443 788899998753 3588999999
Q ss_pred cCCCCCCCCEEEEEe-CCeEEEeeeCCcCCCc
Q 025628 192 LGGSMGQLPTYILFE-NNAEINRFPAFGFEEK 222 (250)
Q Consensus 192 ~~~~~~~lPTlilf~-~G~e~~r~~g~~~~g~ 222 (250)
+ +||+++++ +|+++.+++|..+..+
T Consensus 82 g------tPt~~~~d~~G~~v~~~~G~~~~~~ 107 (112)
T PF13098_consen 82 G------TPTIVFLDKDGKIVYRIPGYLSPEE 107 (112)
T ss_dssp S------SSEEEECTTTSCEEEEEESS--HHH
T ss_pred c------cCEEEEEcCCCCEEEEecCCCCHHH
Confidence 9 99999997 8999999999955433
No 86
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.23 E-value=1.8e-10 Score=94.25 Aligned_cols=78 Identities=17% Similarity=0.254 Sum_probs=65.0
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC----------------------ChhHHHHhCCccC
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL----------------------FPNAAEKFGISLG 193 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~----------------------~~~la~k~~I~~~ 193 (250)
++++++|.||++||++|+...|.+.++.++++..+++++.++++. ..+++++|++..
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~- 138 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP- 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC-
Confidence 345599999999999999999999999999987779999999864 346778999988
Q ss_pred CCCCCCCEEEEEe-CCeEEEeeeCCcC
Q 025628 194 GSMGQLPTYILFE-NNAEINRFPAFGF 219 (250)
Q Consensus 194 ~~~~~lPTlilf~-~G~e~~r~~g~~~ 219 (250)
+|+.++++ +|+.+....|..+
T Consensus 139 -----~P~~~lid~~g~i~~~~~g~~~ 160 (173)
T PRK03147 139 -----LPTTFLIDKDGKVVKVITGEMT 160 (173)
T ss_pred -----cCeEEEECCCCcEEEEEeCCCC
Confidence 99988886 7777777777643
No 87
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.22 E-value=3.7e-11 Score=100.31 Aligned_cols=76 Identities=14% Similarity=0.079 Sum_probs=58.2
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChh-----------------------HHHHhCCcc
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN-----------------------AAEKFGISL 192 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~-----------------------la~k~~I~~ 192 (250)
++++++|+|||+||++|+++.|.+.++++ ++++++.|+.++.++ +++.|++.+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 45569999999999999999999998865 278889998765433 233556666
Q ss_pred CCCCCCCCEEEEE-eCCeEEEeeeCCcCCC
Q 025628 193 GGSMGQLPTYILF-ENNAEINRFPAFGFEE 221 (250)
Q Consensus 193 ~~~~~~lPTlilf-~~G~e~~r~~g~~~~g 221 (250)
+|+.+++ ++|+...+..|..+++
T Consensus 143 ------~P~t~vid~~G~i~~~~~G~~~~~ 166 (185)
T PRK15412 143 ------APETFLIDGNGIIRYRHAGDLNPR 166 (185)
T ss_pred ------CCeEEEECCCceEEEEEecCCCHH
Confidence 9966666 5899999998875544
No 88
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.21 E-value=9.6e-11 Score=91.48 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=60.9
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC-----C----------------------ChhHHHHh
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG-----L----------------------FPNAAEKF 188 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~-----~----------------------~~~la~k~ 188 (250)
++++++|+|||+||++|++..|.++++.++|+.+++.++.|+.+ . ...+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 34569999999999999999999999999999878999988652 1 12345566
Q ss_pred CCccCCCCCCCCEEEEEe-CCeEEEeeeCC
Q 025628 189 GISLGGSMGQLPTYILFE-NNAEINRFPAF 217 (250)
Q Consensus 189 ~I~~~~~~~~lPTlilf~-~G~e~~r~~g~ 217 (250)
++.+ +|+.++++ +|+.+.+..|.
T Consensus 102 ~v~~------~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQY------WPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCc------CCeEEEECCCCcEEEEEecC
Confidence 7766 99998885 78888887764
No 89
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.20 E-value=4.7e-11 Score=122.77 Aligned_cols=81 Identities=16% Similarity=0.248 Sum_probs=66.8
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEEC---C------------------------CChhHHHHh
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDL---G------------------------LFPNAAEKF 188 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv---~------------------------~~~~la~k~ 188 (250)
++++++|+|||+||++|+.+.|.+++++++|+++++.++.|.. + ....++++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4566999999999999999999999999999887788888742 2 233567788
Q ss_pred CCccCCCCCCCCEEEEE-eCCeEEEeeeCCcCCCc
Q 025628 189 GISLGGSMGQLPTYILF-ENNAEINRFPAFGFEEK 222 (250)
Q Consensus 189 ~I~~~~~~~~lPTlilf-~~G~e~~r~~g~~~~g~ 222 (250)
+|.+ +||++++ ++|+.+.|..|......
T Consensus 499 ~V~~------iPt~ilid~~G~iv~~~~G~~~~~~ 527 (1057)
T PLN02919 499 GVSS------WPTFAVVSPNGKLIAQLSGEGHRKD 527 (1057)
T ss_pred CCCc------cceEEEECCCCeEEEEEecccCHHH
Confidence 8888 9999999 59999999988654433
No 90
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.19 E-value=6.7e-11 Score=91.41 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=58.9
Q ss_pred ceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEE---------------------CCCChhHHHHhCCccCCCC
Q 025628 138 RYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVD---------------------LGLFPNAAEKFGISLGGSM 196 (250)
Q Consensus 138 ~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VD---------------------v~~~~~la~k~~I~~~~~~ 196 (250)
++++|.||++||++|+.+.|.++++.+++. +..+.+| .+.+.+++++|+|.+
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~---- 93 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSV---- 93 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhhCC---EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCc----
Confidence 559999999999999999999999887642 2222222 134567899999999
Q ss_pred CCCCEEEEEeCCeEEEeeeCCcCCCcc
Q 025628 197 GQLPTYILFENNAEINRFPAFGFEEKF 223 (250)
Q Consensus 197 ~~lPTlilf~~G~e~~r~~g~~~~g~i 223 (250)
+||++++++|+...+..|..+.+.+
T Consensus 94 --~P~~~vid~~gi~~~~~g~~~~~~~ 118 (123)
T cd03011 94 --TPAIVIVDPGGIVFVTTGVTSEWGL 118 (123)
T ss_pred --ccEEEEEcCCCeEEEEeccCCHHHH
Confidence 9999999877688888888554443
No 91
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.8e-11 Score=111.03 Aligned_cols=86 Identities=26% Similarity=0.414 Sum_probs=71.9
Q ss_pred ChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEE
Q 025628 123 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTY 202 (250)
Q Consensus 123 ~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTl 202 (250)
+...+.......+.. ++|+|||+||++|+++.|.+.+++..+.. .+.++.||++.+++++++|+|.+ .||+
T Consensus 35 ~~~~~~~~~~~~~~~--~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~~~~y~i~g------fPtl 105 (383)
T KOG0191|consen 35 TLDSFFDFLLKDDSP--WLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDLCEKYGIQG------FPTL 105 (383)
T ss_pred hccccHHHhhccCCc--eEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHHHHhcCCcc------CcEE
Confidence 334444433145555 99999999999999999999999999986 89999999999999999999999 9999
Q ss_pred EEEeCCeEEEeeeCC
Q 025628 203 ILFENNAEINRFPAF 217 (250)
Q Consensus 203 ilf~~G~e~~r~~g~ 217 (250)
..|.+|++.....+.
T Consensus 106 ~~f~~~~~~~~~~~~ 120 (383)
T KOG0191|consen 106 KVFRPGKKPIDYSGP 120 (383)
T ss_pred EEEcCCCceeeccCc
Confidence 999999555555554
No 92
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.15 E-value=2.6e-10 Score=94.13 Aligned_cols=74 Identities=16% Similarity=0.101 Sum_probs=56.0
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC-----------------------ChhHHHHhCCcc
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-----------------------FPNAAEKFGISL 192 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~-----------------------~~~la~k~~I~~ 192 (250)
++++++|+||++||++|+++.|.+++++++ +++++.|+.+. ...++++|++.+
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 455699999999999999999999888753 57777777542 223455666666
Q ss_pred CCCCCCCCEEEEE-eCCeEEEeeeCCcC
Q 025628 193 GGSMGQLPTYILF-ENNAEINRFPAFGF 219 (250)
Q Consensus 193 ~~~~~~lPTlilf-~~G~e~~r~~g~~~ 219 (250)
+|+.+++ ++|+.+.+..|..+
T Consensus 138 ------~P~~~~id~~G~i~~~~~G~~~ 159 (173)
T TIGR00385 138 ------APETFLVDGNGVILYRHAGPLN 159 (173)
T ss_pred ------CCeEEEEcCCceEEEEEeccCC
Confidence 9966665 58999999888744
No 93
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.13 E-value=5.3e-10 Score=89.09 Aligned_cols=84 Identities=19% Similarity=0.182 Sum_probs=65.5
Q ss_pred CCceEEEEEecC-CChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC---------------------hhHHHHhCCc--
Q 025628 136 TSRYWLVEFRAQ-CSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF---------------------PNAAEKFGIS-- 191 (250)
Q Consensus 136 k~~~vlV~FyA~-WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~---------------------~~la~k~~I~-- 191 (250)
++++++|+||++ |||+|+...|.+.+++++|+.+++.++.|..+.. ..+++++++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 455599999999 9999999999999999998888899998887644 3466777876
Q ss_pred cCCCC-CCCCEEEEE-eCCeEEEeeeCCcC
Q 025628 192 LGGSM-GQLPTYILF-ENNAEINRFPAFGF 219 (250)
Q Consensus 192 ~~~~~-~~lPTlilf-~~G~e~~r~~g~~~ 219 (250)
..... ..+|+.+++ ++|+.+.+..|..+
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 10001 139987776 58999999888866
No 94
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.11 E-value=3.3e-10 Score=89.25 Aligned_cols=87 Identities=6% Similarity=0.007 Sum_probs=58.2
Q ss_pred cCCCCceEEEEEecCCChhhHHHhhhH---HHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEe-CC
Q 025628 133 EGKTSRYWLVEFRAQCSSTCIRASRIF---PELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFE-NN 208 (250)
Q Consensus 133 ~~~k~~~vlV~FyA~WC~~C~~~~p~~---~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~-~G 208 (250)
+++|+ ++|+|+++||++|+.+...+ .++++..+ +++..+.+|.+....-....+ .. +||+++++ +|
T Consensus 21 ~~~Kp--vmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-~~Fv~V~l~~d~td~~~~~~g-~~------vPtivFld~~g 90 (130)
T cd02960 21 KSNKP--LMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-EDFIMLNLVHETTDKNLSPDG-QY------VPRIMFVDPSL 90 (130)
T ss_pred HCCCe--EEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-hCeEEEEEEeccCCCCcCccC-cc------cCeEEEECCCC
Confidence 44455 99999999999999999874 33444332 256666777653211111122 34 99999995 89
Q ss_pred eEEEeeeCCcCCCcccccccc
Q 025628 209 AEINRFPAFGFEEKFSHPHIT 229 (250)
Q Consensus 209 ~e~~r~~g~~~~g~i~~~~~~ 229 (250)
+++.|++|..++....-..-+
T Consensus 91 ~vi~~i~Gy~~~~~~~y~~~~ 111 (130)
T cd02960 91 TVRADITGRYSNRLYTYEPAD 111 (130)
T ss_pred CCcccccccccCccceeCcCc
Confidence 999999999777665444333
No 95
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.11 E-value=6.3e-10 Score=82.22 Aligned_cols=64 Identities=17% Similarity=0.310 Sum_probs=57.9
Q ss_pred EEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEe
Q 025628 140 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINR 213 (250)
Q Consensus 140 vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r 213 (250)
-+.-|+++||++|....+.++++++++. ++++..+|+++.++.+++|||.+ +||+++ ||+.+.+
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~~e~a~~~~V~~------vPt~vi--dG~~~~~ 78 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALFQDEVEERGIMS------VPAIFL--NGELFGF 78 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhCHHHHHHcCCcc------CCEEEE--CCEEEEe
Confidence 5778999999999999999999998764 79999999999999999999999 999975 7877664
No 96
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.08 E-value=4.9e-10 Score=88.39 Aligned_cols=98 Identities=12% Similarity=0.166 Sum_probs=78.6
Q ss_pred cccCChhhHHHHHhcCCCCceEEEEEec--CCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCC
Q 025628 119 SNKLTPLQLEALLTEGKTSRYWLVEFRA--QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSM 196 (250)
Q Consensus 119 v~~l~~~~l~~~l~~~~k~~~vlV~FyA--~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~ 196 (250)
...++..++++.+ ..... .++.|-. .-+|.+...+=++++++++|.+.++++++||++++++++.+|||.+
T Consensus 19 ~~~~~~~~~~~~~-~~~~~--~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~s---- 91 (132)
T PRK11509 19 WTPVSESRLDDWL-TQAPD--GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFR---- 91 (132)
T ss_pred CCccccccHHHHH-hCCCc--EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCcc----
Confidence 3455667788888 55444 4444432 3467777788889999999975469999999999999999999999
Q ss_pred CCCCEEEEEeCCeEEEeeeCCcCCCcccc
Q 025628 197 GQLPTYILFENNAEINRFPAFGFEEKFSH 225 (250)
Q Consensus 197 ~~lPTlilf~~G~e~~r~~g~~~~g~i~~ 225 (250)
+||+++|+||+++.+..|..++..+..
T Consensus 92 --iPTLl~FkdGk~v~~i~G~~~k~~l~~ 118 (132)
T PRK11509 92 --FPATLVFTGGNYRGVLNGIHPWAELIN 118 (132)
T ss_pred --CCEEEEEECCEEEEEEeCcCCHHHHHH
Confidence 999999999999999999977655543
No 97
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=1.2e-10 Score=109.63 Aligned_cols=89 Identities=19% Similarity=0.211 Sum_probs=74.3
Q ss_pred ccccccccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCC--CCcEEEEEECC--CChhHHHH
Q 025628 112 VFQKLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN--KNVSFGIVDLG--LFPNAAEK 187 (250)
Q Consensus 112 ~~~~~~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~--~~v~f~~VDv~--~~~~la~k 187 (250)
.|+..+++..++.++|+..+ ...+ +.++|+||++||++|++++|.|+++++.... +-+.+..|||. ++..+|++
T Consensus 34 Ly~~~D~ii~Ld~~tf~~~v-~~~~-~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRe 111 (606)
T KOG1731|consen 34 LYSPDDPIIELDVDTFNAAV-FGSR-KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCRE 111 (606)
T ss_pred ccCCCCCeEEeehhhhHHHh-cccc-hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhh
Confidence 35556789999999999999 4333 3499999999999999999999999987653 35789999997 56679999
Q ss_pred hCCccCCCCCCCCEEEEEeCC
Q 025628 188 FGISLGGSMGQLPTYILFENN 208 (250)
Q Consensus 188 ~~I~~~~~~~~lPTlilf~~G 208 (250)
|+|.. .||+-.|..+
T Consensus 112 f~V~~------~Ptlryf~~~ 126 (606)
T KOG1731|consen 112 FSVSG------YPTLRYFPPD 126 (606)
T ss_pred cCCCC------CceeeecCCc
Confidence 99999 9999999654
No 98
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.06 E-value=2.4e-10 Score=96.65 Aligned_cols=44 Identities=5% Similarity=0.021 Sum_probs=40.0
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 179 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~ 179 (250)
++++++|+|||+||++|++..|.+.++.++|+.+++.++.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 34569999999999999999999999999999888999999874
No 99
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.06 E-value=1.1e-09 Score=83.41 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=40.1
Q ss_pred CceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEE---CCCChhHHHHhCCcc
Q 025628 137 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVD---LGLFPNAAEKFGISL 192 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VD---v~~~~~la~k~~I~~ 192 (250)
+++++|.||++||++|+++.|.++++.++++. ++.++.+. .++..+.++++++..
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~ 78 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEA 78 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCC
Confidence 45699999999999999999999999888865 67777662 112223445555543
No 100
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.1e-10 Score=106.05 Aligned_cols=100 Identities=21% Similarity=0.359 Sum_probs=79.7
Q ss_pred cccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCC-CCcEEEEEECCCChhHHHHhCCccCCCCC
Q 025628 119 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN-KNVSFGIVDLGLFPNAAEKFGISLGGSMG 197 (250)
Q Consensus 119 v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~-~~v~f~~VDv~~~~~la~k~~I~~~~~~~ 197 (250)
+..++..++++...+.+.. |+|.||||||++|+.++|.+++++..++. .++.++++|++....++++++|..
T Consensus 146 v~~l~~~~~~~~~~~~~~~--~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~----- 218 (383)
T KOG0191|consen 146 VFELTKDNFDETVKDSDAD--WLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRG----- 218 (383)
T ss_pred eEEccccchhhhhhccCcc--eEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccC-----
Confidence 5556666676665345555 99999999999999999999999998873 689999999999999999999999
Q ss_pred CCCEEEEEeCCeE-EEeeeCCcCCCccccc
Q 025628 198 QLPTYILFENNAE-INRFPAFGFEEKFSHP 226 (250)
Q Consensus 198 ~lPTlilf~~G~e-~~r~~g~~~~g~i~~~ 226 (250)
+||+.+|++|.+ .....+..+...++.|
T Consensus 219 -~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~ 247 (383)
T KOG0191|consen 219 -YPTLKLFPPGEEDIYYYSGLRDSDSIVSF 247 (383)
T ss_pred -CceEEEecCCCcccccccccccHHHHHHH
Confidence 999999999988 4444444333344444
No 101
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.01 E-value=1.6e-09 Score=89.91 Aligned_cols=72 Identities=18% Similarity=0.105 Sum_probs=55.9
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh-------------hHHHHhCC--ccCCCCCCCCEEEEE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-------------NAAEKFGI--SLGGSMGQLPTYILF 205 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~-------------~la~k~~I--~~~~~~~~lPTlilf 205 (250)
+|+|||+|||+|+++.|.+.+++++| ++.++.|+++... .+.+.|++ .+ +||.+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~------iPttfLI 143 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVA------TPTTFLV 143 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCC------CCeEEEE
Confidence 77899999999999999999999998 5788888877431 24567774 46 9998888
Q ss_pred e-CCeEE-EeeeCCcCCC
Q 025628 206 E-NNAEI-NRFPAFGFEE 221 (250)
Q Consensus 206 ~-~G~e~-~r~~g~~~~g 221 (250)
+ +|+.. ....|..+.+
T Consensus 144 d~~G~i~~~~~~G~~~~~ 161 (181)
T PRK13728 144 NVNTLEALPLLQGATDAA 161 (181)
T ss_pred eCCCcEEEEEEECCCCHH
Confidence 5 77765 4678875443
No 102
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.95 E-value=4.7e-09 Score=87.51 Aligned_cols=74 Identities=8% Similarity=-0.051 Sum_probs=54.4
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEE------EEEECCCCh---------------------------
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSF------GIVDLGLFP--------------------------- 182 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f------~~VDv~~~~--------------------------- 182 (250)
++|.++|+|||+||++|+..+|.+.+++++ ++.+ ..||.++..
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 466699999999999999999999999652 5555 667766422
Q ss_pred --hHHHHhCCccCCCCCCCCEE--EEEeCCeEEEeeeCCcC
Q 025628 183 --NAAEKFGISLGGSMGQLPTY--ILFENNAEINRFPAFGF 219 (250)
Q Consensus 183 --~la~k~~I~~~~~~~~lPTl--ilf~~G~e~~r~~g~~~ 219 (250)
..+..|++.+ +|+. ++-++|+.+.+..|..+
T Consensus 134 ~g~v~~~~gv~~------~P~T~fVIDk~GkVv~~~~G~l~ 168 (184)
T TIGR01626 134 KGAVKNAWQLNS------EDSAIIVLDKTGKVKFVKEGALS 168 (184)
T ss_pred cchHHHhcCCCC------CCceEEEECCCCcEEEEEeCCCC
Confidence 2344556655 7654 44468999999999743
No 103
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.91 E-value=3.2e-09 Score=85.65 Aligned_cols=42 Identities=10% Similarity=-0.020 Sum_probs=38.3
Q ss_pred CceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC
Q 025628 137 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 179 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~ 179 (250)
+++++|+|||+||+ |+...|.++++.++|+.+++.++.|+++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 45599999999999 9999999999999998878999999764
No 104
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.90 E-value=8.7e-09 Score=89.26 Aligned_cols=43 Identities=9% Similarity=-0.003 Sum_probs=39.8
Q ss_pred CceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC
Q 025628 137 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 179 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~ 179 (250)
+++++|+|||+||++|+.+.|.+.++.++|+.+++.++.|+++
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 4569999999999999999999999999999888999999974
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.90 E-value=2.6e-08 Score=83.50 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=50.0
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC--------------------CChhHHHHhCCccCCC
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG--------------------LFPNAAEKFGISLGGS 195 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~--------------------~~~~la~k~~I~~~~~ 195 (250)
++++++|+|||+|||+|+++.|.+.++.++++ +++..+..+ ...++++.|++..
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~---~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~--- 146 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE---TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGK--- 146 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC---CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCc---
Confidence 44569999999999999999999999987653 344444322 1235667778877
Q ss_pred CCCCCEEEEEe-CCeEEEe
Q 025628 196 MGQLPTYILFE-NNAEINR 213 (250)
Q Consensus 196 ~~~lPTlilf~-~G~e~~r 213 (250)
+|+.++++ +|+...+
T Consensus 147 ---~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 147 ---IPYGVLLDQDGKIRAK 162 (189)
T ss_pred ---cceEEEECCCCeEEEc
Confidence 99877765 6766654
No 106
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.89 E-value=5.8e-09 Score=77.12 Aligned_cols=73 Identities=27% Similarity=0.534 Sum_probs=64.1
Q ss_pred CceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC-CChhHHHHhC--CccCCCCCCCCEEEEEeCCeEEEe
Q 025628 137 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG-LFPNAAEKFG--ISLGGSMGQLPTYILFENNAEINR 213 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~-~~~~la~k~~--I~~~~~~~~lPTlilf~~G~e~~r 213 (250)
.++++++||++||++|+.+.|.+.++.+++.. .+.+..+|+. ..++.+..++ +.. +|+++++.+|+...+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~------~p~~~~~~~~~~~~~ 104 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRS------IPTLLLFKDGKEVDR 104 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhcc------CCeEEEEeCcchhhh
Confidence 45599999999999999999999999999976 7999999997 8999999999 888 999999888877555
Q ss_pred eeC
Q 025628 214 FPA 216 (250)
Q Consensus 214 ~~g 216 (250)
..+
T Consensus 105 ~~~ 107 (127)
T COG0526 105 LVG 107 (127)
T ss_pred hhh
Confidence 444
No 107
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.88 E-value=4.5e-09 Score=76.08 Aligned_cols=69 Identities=25% Similarity=0.295 Sum_probs=50.6
Q ss_pred HHHHHhcCCCCceEEEEEecCCChhhHHHhhhH---HHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEE
Q 025628 127 LEALLTEGKTSRYWLVEFRAQCSSTCIRASRIF---PELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 203 (250)
Q Consensus 127 l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~---~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTli 203 (250)
++++. +++++ ++|+|+|+||++|+.+...+ +++.+.+. +++..+++|.++.....+..+ .+ +|+++
T Consensus 10 l~~A~-~~~kp--vlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~~~~~~~-~~------~P~~~ 78 (82)
T PF13899_consen 10 LAEAK-KEGKP--VLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDPNAQFDR-QG------YPTFF 78 (82)
T ss_dssp HHHHH-HHTSE--EEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHHHHHHHH-CS------SSEEE
T ss_pred HHHHH-HcCCC--EEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCChhHHhCC-cc------CCEEE
Confidence 44444 44555 99999999999999999876 44554344 389999999987766543222 55 99999
Q ss_pred EEe
Q 025628 204 LFE 206 (250)
Q Consensus 204 lf~ 206 (250)
+++
T Consensus 79 ~ld 81 (82)
T PF13899_consen 79 FLD 81 (82)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 108
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.86 E-value=1.2e-08 Score=78.35 Aligned_cols=80 Identities=10% Similarity=0.110 Sum_probs=64.0
Q ss_pred CCCceEEEEEecCCChhhHHHhhh-H--HHHHHHcCCCCcEEEEEECC--CChhHHHHhCCccCCCCCCCCEEEEEe--C
Q 025628 135 KTSRYWLVEFRAQCSSTCIRASRI-F--PELSIAYSNKNVSFGIVDLG--LFPNAAEKFGISLGGSMGQLPTYILFE--N 207 (250)
Q Consensus 135 ~k~~~vlV~FyA~WC~~C~~~~p~-~--~~l~~~y~~~~v~f~~VDv~--~~~~la~k~~I~~~~~~~~lPTlilf~--~ 207 (250)
.++++++|+|+++||++|+.+... | +++.+..+. +..+.++|++ +..++++.|++.+ +|++++++ +
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~~~~~~~~------~P~~~~i~~~~ 87 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFLQSYKVDK------YPHIAIIDPRT 87 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHHHHhCccC------CCeEEEEeCcc
Confidence 345569999999999999999874 5 455555543 7888899997 4456889999999 99999996 5
Q ss_pred CeEEEeeeCCcCCC
Q 025628 208 NAEINRFPAFGFEE 221 (250)
Q Consensus 208 G~e~~r~~g~~~~g 221 (250)
|+.+.+.+|..+..
T Consensus 88 g~~l~~~~G~~~~~ 101 (114)
T cd02958 88 GEVLKVWSGNITPE 101 (114)
T ss_pred CcEeEEEcCCCCHH
Confidence 99999999996544
No 109
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.84 E-value=8.2e-09 Score=83.32 Aligned_cols=43 Identities=14% Similarity=-0.020 Sum_probs=39.0
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEEC
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDL 178 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv 178 (250)
++++++|.|||+|||+|+...|.+.++.++|+.+++.++.+++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 3445999999999999999999999999999988999999985
No 110
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.81 E-value=5.1e-08 Score=79.99 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=57.3
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC-----------------------------hhHHH
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-----------------------------PNAAE 186 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~-----------------------------~~la~ 186 (250)
+++++++.||++|||.|....|.+.++.++++..+++++.|..+.. ..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 3455999999999999999999999999999877899999987641 12455
Q ss_pred HhCCccCCCCCCCCEEEEEe-CCeEEEe
Q 025628 187 KFGISLGGSMGQLPTYILFE-NNAEINR 213 (250)
Q Consensus 187 k~~I~~~~~~~~lPTlilf~-~G~e~~r 213 (250)
.|++.. .|+.++++ +|+.+.+
T Consensus 104 ~~~v~~------~P~~~lid~~G~v~~~ 125 (171)
T cd02969 104 AYGAAC------TPDFFLFDPDGKLVYR 125 (171)
T ss_pred HcCCCc------CCcEEEECCCCeEEEe
Confidence 667766 89988886 6765544
No 111
>PLN02412 probable glutathione peroxidase
Probab=98.80 E-value=1.4e-08 Score=83.47 Aligned_cols=43 Identities=9% Similarity=-0.021 Sum_probs=39.7
Q ss_pred CceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC
Q 025628 137 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 179 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~ 179 (250)
+++++|+|||+||++|++..|.+.++.++|+.+++.++.|+++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 3569999999999999999999999999999888999999875
No 112
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.73 E-value=5.6e-08 Score=63.93 Aligned_cols=60 Identities=32% Similarity=0.510 Sum_probs=51.7
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHH---HhCCccCCCCCCCCEEEEEeCC
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAE---KFGISLGGSMGQLPTYILFENN 208 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~---k~~I~~~~~~~~lPTlilf~~G 208 (250)
++.||++||++|++..+.+.++ ++..+++.+..+|++..++..+ ++++.. +|+++++++|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKELKRYGVGG------VPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhHHHhCCCcc------ccEEEEEeCC
Confidence 4789999999999999999998 3444589999999998887655 788888 9999999887
No 113
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.72 E-value=7.7e-08 Score=75.77 Aligned_cols=87 Identities=11% Similarity=0.107 Sum_probs=63.3
Q ss_pred CceEEEEEe-cCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC---------------------hhHHHHhCCccCC
Q 025628 137 SRYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF---------------------PNAAEKFGISLGG 194 (250)
Q Consensus 137 ~~~vlV~Fy-A~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~---------------------~~la~k~~I~~~~ 194 (250)
+++++|.|| ++|||.|....|.++++.+++..+++.++.|..+.. ..+++.||+....
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 344999999 589999999999999999998877888888877532 2455666666510
Q ss_pred ---CCCCCCEEEEEe-CCeEEEeeeCCcCCCcc
Q 025628 195 ---SMGQLPTYILFE-NNAEINRFPAFGFEEKF 223 (250)
Q Consensus 195 ---~~~~lPTlilf~-~G~e~~r~~g~~~~g~i 223 (250)
.....|+.++++ +|+...++.|..+.+.+
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~ 135 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHA 135 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccchH
Confidence 011128877776 79999999888755443
No 114
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.72 E-value=2.6e-09 Score=90.76 Aligned_cols=99 Identities=19% Similarity=0.334 Sum_probs=82.4
Q ss_pred ccccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCC
Q 025628 116 LGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGS 195 (250)
Q Consensus 116 ~~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~ 195 (250)
...++.++.+++.+.+ ++ . |+++|+|+|||.|+...|.+...+.--.+-++++++||++.+|-+.-+|-+..
T Consensus 23 ~s~~~~~~eenw~~~l-~g--e--wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vta--- 94 (248)
T KOG0913|consen 23 SSKLTRIDEENWKELL-TG--E--WMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTA--- 94 (248)
T ss_pred cceeEEecccchhhhh-ch--H--HHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEe---
Confidence 3467888999998888 33 3 99999999999999999999888775555589999999999999999999999
Q ss_pred CCCCCEEEEEeCCeEEEeeeCCcCCCccccc
Q 025628 196 MGQLPTYILFENNAEINRFPAFGFEEKFSHP 226 (250)
Q Consensus 196 ~~~lPTlilf~~G~e~~r~~g~~~~g~i~~~ 226 (250)
+||+--.++| +.-|+-|..++..+..|
T Consensus 95 ---LptIYHvkDG-eFrrysgaRdk~dfisf 121 (248)
T KOG0913|consen 95 ---LPTIYHVKDG-EFRRYSGARDKNDFISF 121 (248)
T ss_pred ---cceEEEeecc-ccccccCcccchhHHHH
Confidence 9999888888 56677777666555444
No 115
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.69 E-value=5.7e-08 Score=80.96 Aligned_cols=40 Identities=13% Similarity=-0.024 Sum_probs=35.5
Q ss_pred EEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC
Q 025628 140 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 179 (250)
Q Consensus 140 vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~ 179 (250)
+++.+||+|||+|+++.|.++++.++|+.+++.++.|+++
T Consensus 44 vlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 44 IIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred EEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 3455699999999999999999999998888999999864
No 116
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.68 E-value=6.1e-08 Score=80.25 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=86.6
Q ss_pred ccccccccCC-hhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCcc
Q 025628 114 QKLGISNKLT-PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISL 192 (250)
Q Consensus 114 ~~~~~v~~l~-~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~ 192 (250)
.|.+....+. +..+-+.. .++.. |++.||-+--..|+-+...++.++.++- +.+|++||+...|-++.+.+|..
T Consensus 63 ~GhG~y~ev~~Ekdf~~~~-~kS~k--VVcHFY~~~f~RCKimDkhLe~LAk~h~--eTrFikvnae~~PFlv~kL~IkV 137 (211)
T KOG1672|consen 63 KGHGEYEEVASEKDFFEEV-KKSEK--VVCHFYRPEFFRCKIMDKHLEILAKRHV--ETRFIKVNAEKAPFLVTKLNIKV 137 (211)
T ss_pred cCCceEEEeccHHHHHHHh-hcCce--EEEEEEcCCCcceehHHHHHHHHHHhcc--cceEEEEecccCceeeeeeeeeE
Confidence 4666777775 45565656 56666 9999999999999999999999999886 78999999999999999999999
Q ss_pred CCCCCCCCEEEEEeCCeEEEeeeCCcCCCcc
Q 025628 193 GGSMGQLPTYILFENNAEINRFPAFGFEEKF 223 (250)
Q Consensus 193 ~~~~~~lPTlilf~~G~e~~r~~g~~~~g~i 223 (250)
+||+++|+||+.+.++.|+..-|+=
T Consensus 138 ------LP~v~l~k~g~~~D~iVGF~dLGnk 162 (211)
T KOG1672|consen 138 ------LPTVALFKNGKTVDYVVGFTDLGNK 162 (211)
T ss_pred ------eeeEEEEEcCEEEEEEeeHhhcCCC
Confidence 9999999999999999999877763
No 117
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.67 E-value=1.1e-07 Score=83.78 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=75.8
Q ss_pred cccccCC-hhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCC
Q 025628 117 GISNKLT-PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGS 195 (250)
Q Consensus 117 ~~v~~l~-~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~ 195 (250)
+.+..++ ++.+-+.+.+.++..+|+|+||-+.++.|..+...+..|+.+|. .++|++|.....+ +..+|.+..
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~~~~-~~~~f~~~~--- 198 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP--EVKFVKIRASKCP-ASENFPDKN--- 198 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEECGCC-TTTTS-TTC---
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEEEehhccC-cccCCcccC---
Confidence 3456674 56677777344566779999999999999999999999999996 7999999988776 788999999
Q ss_pred CCCCCEEEEEeCCeEEEeeeCCcCCCc
Q 025628 196 MGQLPTYILFENNAEINRFPAFGFEEK 222 (250)
Q Consensus 196 ~~~lPTlilf~~G~e~~r~~g~~~~g~ 222 (250)
+||+++|++|..+.++.|+...+.
T Consensus 199 ---LPtllvYk~G~l~~~~V~l~~~~g 222 (265)
T PF02114_consen 199 ---LPTLLVYKNGDLIGNFVGLTDLLG 222 (265)
T ss_dssp ----SEEEEEETTEEEEEECTGGGCT-
T ss_pred ---CCEEEEEECCEEEEeEEehHHhcC
Confidence 999999999999999999876543
No 118
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.65 E-value=2e-07 Score=71.73 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=54.1
Q ss_pred CCceEEEEEecC-CChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh---------------------hHHHHhCCccC
Q 025628 136 TSRYWLVEFRAQ-CSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP---------------------NAAEKFGISLG 193 (250)
Q Consensus 136 k~~~vlV~FyA~-WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~---------------------~la~k~~I~~~ 193 (250)
++++++|.||++ ||+.|+...+.++++..+++..++.++.|..+... .+++.|++...
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 445699999999 99999999999999999999889999999986432 35566666622
Q ss_pred CCCCCCCEEEEEeC
Q 025628 194 GSMGQLPTYILFEN 207 (250)
Q Consensus 194 ~~~~~lPTlilf~~ 207 (250)
....+.|+..+++.
T Consensus 104 ~~~~~~p~~~lid~ 117 (124)
T PF00578_consen 104 KDTLALPAVFLIDP 117 (124)
T ss_dssp TTSEESEEEEEEET
T ss_pred cCCceEeEEEEECC
Confidence 22223777666653
No 119
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.62 E-value=7.6e-08 Score=77.63 Aligned_cols=72 Identities=11% Similarity=0.224 Sum_probs=57.1
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCC--CcEEEEEECCCC-------------------------hhHHHHh
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK--NVSFGIVDLGLF-------------------------PNAAEKF 188 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~--~v~f~~VDv~~~-------------------------~~la~k~ 188 (250)
+++.+.++|.|.||||||.+.|++.++.++.+.. .+.++-|+-|+. .++.++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4456999999999999999999999998877652 377777777643 2467899
Q ss_pred CCccCCCCCCCCEEEEEe-CCeEEEe
Q 025628 189 GISLGGSMGQLPTYILFE-NNAEINR 213 (250)
Q Consensus 189 ~I~~~~~~~~lPTlilf~-~G~e~~r 213 (250)
+|.+ +|++++.+ +|..+.+
T Consensus 112 ~v~~------iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 112 EVKG------IPALVILKPDGTVVTE 131 (157)
T ss_pred ccCc------CceeEEecCCCCEehH
Confidence 9999 99999886 6766654
No 120
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.62 E-value=1.5e-07 Score=66.36 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=44.8
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHh-----CCccCCCCCCCCEEEEEeCCeEEE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKF-----GISLGGSMGQLPTYILFENNAEIN 212 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~-----~I~~~~~~~~lPTlilf~~G~e~~ 212 (250)
++.||++||++|+++.+.+++.. +.+-.+|+++++...+.+ ++.+ +|++ ++++|+.+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-------~~~~~idi~~~~~~~~~~~~~~~~~~~------vP~i-~~~~g~~l~ 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-------AAYEWVDIEEDEGAADRVVSVNNGNMT------VPTV-KFADGSFLT 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-------CceEEEeCcCCHhHHHHHHHHhCCCce------eCEE-EECCCeEec
Confidence 46799999999999999887653 445679999888776664 7777 9997 577776544
No 121
>smart00594 UAS UAS domain.
Probab=98.62 E-value=1.9e-07 Score=72.70 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=57.5
Q ss_pred CceEEEEEecCCChhhHHHhhh-H--HHHHHHcCCCCcEEEEEECCC--ChhHHHHhCCccCCCCCCCCEEEEEe-CC--
Q 025628 137 SRYWLVEFRAQCSSTCIRASRI-F--PELSIAYSNKNVSFGIVDLGL--FPNAAEKFGISLGGSMGQLPTYILFE-NN-- 208 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~-~--~~l~~~y~~~~v~f~~VDv~~--~~~la~k~~I~~~~~~~~lPTlilf~-~G-- 208 (250)
+|.++|+|+++||++|+.+... | +++.+..+. ++.+.++|++. ..+++++|++.+ +|++++++ +|
T Consensus 27 ~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~~~~~~~~------~P~~~~l~~~~g~ 99 (122)
T smart00594 27 RRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVSQFYKLDS------FPYVAIVDPRTGQ 99 (122)
T ss_pred cCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHHHhcCcCC------CCEEEEEecCCCc
Confidence 3459999999999999998875 3 445555543 78888899874 345899999999 99999996 44
Q ss_pred ---eEEEeeeCCcC
Q 025628 209 ---AEINRFPAFGF 219 (250)
Q Consensus 209 ---~e~~r~~g~~~ 219 (250)
+.+.+++|..+
T Consensus 100 ~~~~~~~~~~G~~~ 113 (122)
T smart00594 100 RVIEWVGVVEGEIS 113 (122)
T ss_pred eeEEEeccccCCCC
Confidence 24557776644
No 122
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.61 E-value=3.6e-07 Score=72.44 Aligned_cols=43 Identities=16% Similarity=0.065 Sum_probs=36.8
Q ss_pred eEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC
Q 025628 139 YWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF 181 (250)
Q Consensus 139 ~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~ 181 (250)
++++.|+++|||+|++..|.++++.+++...++.++.|..+..
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 3555567999999999999999999999877899999988643
No 123
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.55 E-value=8e-07 Score=70.73 Aligned_cols=81 Identities=5% Similarity=-0.002 Sum_probs=57.3
Q ss_pred ceEEEEEe-cCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC-----------------------hhHHHHhCCccC
Q 025628 138 RYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-----------------------PNAAEKFGISLG 193 (250)
Q Consensus 138 ~~vlV~Fy-A~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~-----------------------~~la~k~~I~~~ 193 (250)
+.++|.|| ++||+.|....|.++++.++++.+++.++.|..+.. ..+++.||+...
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 34777777 999999999999999999999877899998877531 234555665531
Q ss_pred CCCCCCCEEEEEe-CCeEEEeeeCCc
Q 025628 194 GSMGQLPTYILFE-NNAEINRFPAFG 218 (250)
Q Consensus 194 ~~~~~lPTlilf~-~G~e~~r~~g~~ 218 (250)
......|+.++++ +|+...+..|.+
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCC
Confidence 1111123656664 788888887775
No 124
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.53 E-value=4.5e-07 Score=62.88 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=42.5
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhH----HHHhCCccCCCCCCCCEEEEE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNA----AEKFGISLGGSMGQLPTYILF 205 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~l----a~k~~I~~~~~~~~lPTlilf 205 (250)
+..|+++||++|++..+.+++ .++.+..+|+++++.. .+++++.+ +|++++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~~~~~------vP~~~~~ 57 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVEKDSAAREEVLKVLGQRG------VPVIVIG 57 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEeccCCHHHHHHHHHHhCCCc------ccEEEEC
Confidence 457999999999999988865 2688999999987654 45688888 9999873
No 125
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.49 E-value=1e-06 Score=72.49 Aligned_cols=82 Identities=9% Similarity=0.006 Sum_probs=58.8
Q ss_pred CceEEEEEe-cCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh----------------------------hHHHH
Q 025628 137 SRYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP----------------------------NAAEK 187 (250)
Q Consensus 137 ~~~vlV~Fy-A~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~----------------------------~la~k 187 (250)
+++++|.|| ++||++|....|.++++.+++...++.++.|.++... .++++
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 355999999 8999999999999999999998778988888876321 23445
Q ss_pred hCCccCCCCCCCCEEEEEe-CCeEEEeeeCCc
Q 025628 188 FGISLGGSMGQLPTYILFE-NNAEINRFPAFG 218 (250)
Q Consensus 188 ~~I~~~~~~~~lPTlilf~-~G~e~~r~~g~~ 218 (250)
||+.........|+.++++ +|+...+..+..
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~ 140 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDL 140 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEecCC
Confidence 5554222112367777775 788777776553
No 126
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.49 E-value=1.1e-06 Score=73.59 Aligned_cols=81 Identities=9% Similarity=-0.013 Sum_probs=58.5
Q ss_pred CceEEEEEe-cCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC-------------------------ChhHHHHhCC
Q 025628 137 SRYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-------------------------FPNAAEKFGI 190 (250)
Q Consensus 137 ~~~vlV~Fy-A~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~-------------------------~~~la~k~~I 190 (250)
+++++|.|| ++||++|....|.++++.+++...+++++.|..+. ...+++.||+
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 445999999 99999999999999999999887788888887653 1245667777
Q ss_pred ccCCCCCCCCEEEEEe-CCeEEEeeeCC
Q 025628 191 SLGGSMGQLPTYILFE-NNAEINRFPAF 217 (250)
Q Consensus 191 ~~~~~~~~lPTlilf~-~G~e~~r~~g~ 217 (250)
.........|+.++++ +|+......+.
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~ 138 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVIQAVEITD 138 (187)
T ss_pred cccCCCceeeEEEEECCCCEEEEEEEeC
Confidence 5321111258666664 78877776544
No 127
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.6e-06 Score=68.44 Aligned_cols=84 Identities=21% Similarity=0.389 Sum_probs=67.9
Q ss_pred cCCCCceEEEEEecCCChhhHHHhhhH---HHHHHHcCCCCcEEEEEECCC----------------ChhHHHHhCCccC
Q 025628 133 EGKTSRYWLVEFRAQCSSTCIRASRIF---PELSIAYSNKNVSFGIVDLGL----------------FPNAAEKFGISLG 193 (250)
Q Consensus 133 ~~~k~~~vlV~FyA~WC~~C~~~~p~~---~~l~~~y~~~~v~f~~VDv~~----------------~~~la~k~~I~~~ 193 (250)
...++++.++.|-.+.|+.|.++...+ .++.+-.. +++.++.+|+.. ..++|++|+|.+
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk-~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs- 115 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK-EHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS- 115 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh-hCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc-
Confidence 345667799999999999999999875 45555444 378888888752 247999999999
Q ss_pred CCCCCCCEEEEEe-CCeEEEeeeCCcCCCcc
Q 025628 194 GSMGQLPTYILFE-NNAEINRFPAFGFEEKF 223 (250)
Q Consensus 194 ~~~~~lPTlilf~-~G~e~~r~~g~~~~g~i 223 (250)
.||+++|+ +|+.+..+||+.+..+.
T Consensus 116 -----tPtfvFfdk~Gk~Il~lPGY~ppe~F 141 (182)
T COG2143 116 -----TPTFVFFDKTGKTILELPGYMPPEQF 141 (182)
T ss_pred -----CceEEEEcCCCCEEEecCCCCCHHHH
Confidence 99999997 78999999999877664
No 128
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.47 E-value=4.4e-07 Score=71.59 Aligned_cols=77 Identities=14% Similarity=0.281 Sum_probs=52.3
Q ss_pred CceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEe-CCeEEEeee
Q 025628 137 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFE-NNAEINRFP 215 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~-~G~e~~r~~ 215 (250)
.+.-++-|..+|||.|+...|.+.++++... ++++-.+..|+++++.++|--.+ .+.+||+|+++ +|+++.++.
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~~el~~~~lt~g---~~~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRDENKELMDQYLTNG---GRSIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHHHHHTTTTTT-S---S--SSEEEEE-TT--EEEEEE
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCChhHHHHHHhCC---CeecCEEEEEcCCCCEeEEEc
Confidence 3345666999999999999999999999753 78888888888888887775422 33499999996 679998887
Q ss_pred CCc
Q 025628 216 AFG 218 (250)
Q Consensus 216 g~~ 218 (250)
+..
T Consensus 116 erP 118 (129)
T PF14595_consen 116 ERP 118 (129)
T ss_dssp SS-
T ss_pred CCC
Confidence 763
No 129
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.47 E-value=9.3e-07 Score=71.11 Aligned_cols=84 Identities=15% Similarity=0.085 Sum_probs=59.1
Q ss_pred CceEEEEEecC-CChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC---------------------hhHHHHhCCccCC
Q 025628 137 SRYWLVEFRAQ-CSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF---------------------PNAAEKFGISLGG 194 (250)
Q Consensus 137 ~~~vlV~FyA~-WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~---------------------~~la~k~~I~~~~ 194 (250)
+++++|.||++ ||+.|....+.+.++.++++.+++.++.|+.+.. ..++++||+....
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 109 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEK 109 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCccc
Confidence 34499999986 6888999999999999999877899999887532 2355666664311
Q ss_pred C--C----CCCCEEEEE-eCCeEEEeeeCCcCC
Q 025628 195 S--M----GQLPTYILF-ENNAEINRFPAFGFE 220 (250)
Q Consensus 195 ~--~----~~lPTlilf-~~G~e~~r~~g~~~~ 220 (250)
. . .-.|+.+++ ++|+.+.++.|..+.
T Consensus 110 ~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~ 142 (154)
T PRK09437 110 KFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS 142 (154)
T ss_pred ccccccccCcceEEEEECCCCEEEEEEcCCCcc
Confidence 0 0 012565555 489888888887543
No 130
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.46 E-value=2e-06 Score=68.12 Aligned_cols=80 Identities=9% Similarity=0.072 Sum_probs=56.2
Q ss_pred CceEEEEEecCC-ChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC-----------------------hhHHHHhCCcc
Q 025628 137 SRYWLVEFRAQC-SSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-----------------------PNAAEKFGISL 192 (250)
Q Consensus 137 ~~~vlV~FyA~W-C~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~-----------------------~~la~k~~I~~ 192 (250)
++++++.||++| |++|+...|.++++.++++ ++.++.|+++.. ...++.||+..
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 345999999999 6999999999999999984 899999988631 23445555542
Q ss_pred CCCCCCCCEEEEEe-CCeEEEeeeCCc
Q 025628 193 GGSMGQLPTYILFE-NNAEINRFPAFG 218 (250)
Q Consensus 193 ~~~~~~lPTlilf~-~G~e~~r~~g~~ 218 (250)
.......|+.++++ +|+......|..
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~~ 130 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVPE 130 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECCC
Confidence 11111246666664 788887777654
No 131
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.43 E-value=1.5e-06 Score=68.30 Aligned_cols=83 Identities=10% Similarity=0.057 Sum_probs=58.2
Q ss_pred CceEEEEEe-cCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC----------------------hhHHHHhCCccC
Q 025628 137 SRYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF----------------------PNAAEKFGISLG 193 (250)
Q Consensus 137 ~~~vlV~Fy-A~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~----------------------~~la~k~~I~~~ 193 (250)
+++++|.|| +.||+.|....|.+.++.++++.+++.++.|..+.. ..+++.+|+...
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~ 101 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLIE 101 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCccc
Confidence 445899999 789999999999999999998766899998887532 134445555441
Q ss_pred CC---CCCCCEEEEEe-CCeEEEeeeCCcC
Q 025628 194 GS---MGQLPTYILFE-NNAEINRFPAFGF 219 (250)
Q Consensus 194 ~~---~~~lPTlilf~-~G~e~~r~~g~~~ 219 (250)
+. ....|+.++++ +|+.+.+..|.++
T Consensus 102 ~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 102 KSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred cccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 11 11234666665 6888888777765
No 132
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=3e-06 Score=65.57 Aligned_cols=109 Identities=16% Similarity=0.258 Sum_probs=92.8
Q ss_pred ChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEE
Q 025628 123 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTY 202 (250)
Q Consensus 123 ~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTl 202 (250)
+..+.++++ .....+.+++-|.-+|-|.|.++...+++.++..++ -..++-+|+++-++..+-|++.. .||+
T Consensus 10 s~~~VdqaI-~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-fa~IylvdideV~~~~~~~~l~~------p~tv 81 (142)
T KOG3414|consen 10 SGWEVDQAI-LSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-FAVIYLVDIDEVPDFVKMYELYD------PPTV 81 (142)
T ss_pred cHHHHHHHH-hcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-ceEEEEEecchhhhhhhhhcccC------CceE
Confidence 345677877 555666799999999999999999999999998874 56788999999999999999999 9999
Q ss_pred EEEeCCeEEEeeeCCcCCCccccccccHHHHhhhccc
Q 025628 203 ILFENNAEINRFPAFGFEEKFSHPHITKKLIAHHFQL 239 (250)
Q Consensus 203 ilf~~G~e~~r~~g~~~~g~i~~~~~~~~~i~~~f~l 239 (250)
++|-+++-+.---|..+..++.-+.-++++.+..++.
T Consensus 82 mfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 82 MFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIET 118 (142)
T ss_pred EEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHH
Confidence 9999998888777777777887777788888877764
No 133
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=9.3e-07 Score=67.84 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=59.0
Q ss_pred hhHHHHHhcCCCCceEEEEEec--------CCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC---hhHHHHhCCccC
Q 025628 125 LQLEALLTEGKTSRYWLVEFRA--------QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF---PNAAEKFGISLG 193 (250)
Q Consensus 125 ~~l~~~l~~~~k~~~vlV~FyA--------~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~---~~la~k~~I~~~ 193 (250)
++|++.+++-.+++.+.|.|++ +|||.|.+.+|.+.+.-+... .++.|+.|+++.- .+.+..|+++..
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEecCCCcccCCCCccccCCC
Confidence 4578777544455569999997 799999999999987777555 4999999999853 344555544432
Q ss_pred CCCCCCCEEEEEeC
Q 025628 194 GSMGQLPTYILFEN 207 (250)
Q Consensus 194 ~~~~~lPTlilf~~ 207 (250)
. ...+||++=+++
T Consensus 92 ~-lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 I-LTAVPTLLRWKR 104 (128)
T ss_pred c-eeecceeeEEcC
Confidence 2 244999998774
No 134
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.38 E-value=3.6e-06 Score=69.07 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=37.1
Q ss_pred CCceEEEEEecCC-ChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC
Q 025628 136 TSRYWLVEFRAQC-SSTCIRASRIFPELSIAYSNKNVSFGIVDLGL 180 (250)
Q Consensus 136 k~~~vlV~FyA~W-C~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~ 180 (250)
++++++|+||++| |++|+.+.|.+.++.+++. +++++.|..|.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~ 86 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADL 86 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCC
Confidence 3455999999999 9999999999999999883 78888888763
No 135
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.33 E-value=2e-06 Score=61.63 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=44.8
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChh-----HHHHhCCccCCCCCCCCEEEEEeCCeEE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN-----AAEKFGISLGGSMGQLPTYILFENNAEI 211 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~-----la~k~~I~~~~~~~~lPTlilf~~G~e~ 211 (250)
++.|+++|||+|+++.+.++++.. + ..+.+..+|.++++. +.+.+|+.+ +|++ |-+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i--~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~------vP~v--~i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNV--K-PAYEVVELDQLSNGSEIQDYLEEITGQRT------VPNI--FINGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCC--C-CCCEEEEeeCCCChHHHHHHHHHHhCCCC------CCeE--EECCEEE
Confidence 467999999999999999988773 2 247788888775543 556667777 9987 4467644
No 136
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.29 E-value=2.9e-06 Score=66.90 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=38.6
Q ss_pred CCceEEEEEecCCChh-hHHHhhhHHHHHHHcCCC---CcEEEEEECCC
Q 025628 136 TSRYWLVEFRAQCSST-CIRASRIFPELSIAYSNK---NVSFGIVDLGL 180 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~-C~~~~p~~~~l~~~y~~~---~v~f~~VDv~~ 180 (250)
++++++|.||++||++ |....|.+.++.++++.. +++++.|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 3456999999999998 999999999999999764 49999888763
No 137
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.28 E-value=6.9e-06 Score=70.34 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=57.3
Q ss_pred CCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC-----------CChhHHHHhCCccCCCCCCCCEE
Q 025628 134 GKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG-----------LFPNAAEKFGISLGGSMGQLPTY 202 (250)
Q Consensus 134 ~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~-----------~~~~la~k~~I~~~~~~~~lPTl 202 (250)
.-..++-|+.||.+.|+.|+.+.|++..++++| ++++..|++| .++..++++||.. +|++
T Consensus 117 ~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~------~Pal 187 (215)
T PF13728_consen 117 QLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKV------TPAL 187 (215)
T ss_pred HHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCc------CCEE
Confidence 334556799999999999999999999999999 6788888887 3577999999998 9999
Q ss_pred EEEeCCe
Q 025628 203 ILFENNA 209 (250)
Q Consensus 203 ilf~~G~ 209 (250)
++.+.+.
T Consensus 188 ~Lv~~~~ 194 (215)
T PF13728_consen 188 FLVNPNT 194 (215)
T ss_pred EEEECCC
Confidence 9997543
No 138
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.25 E-value=8.9e-06 Score=68.17 Aligned_cols=80 Identities=9% Similarity=-0.066 Sum_probs=56.7
Q ss_pred CceEEEEEe-cCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC-------------------------ChhHHHHhCC
Q 025628 137 SRYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-------------------------FPNAAEKFGI 190 (250)
Q Consensus 137 ~~~vlV~Fy-A~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~-------------------------~~~la~k~~I 190 (250)
++++++.|| ++||+.|..+.+.+.+..+++...++.++.|..|. +..++++||+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 345899999 99999999999999999999987788888887753 2245677777
Q ss_pred ccCCCCCCCCEEEEEe-CCeEEEeeeC
Q 025628 191 SLGGSMGQLPTYILFE-NNAEINRFPA 216 (250)
Q Consensus 191 ~~~~~~~~lPTlilf~-~G~e~~r~~g 216 (250)
.........|+..+++ +|+.......
T Consensus 111 ~~~~~g~~~r~tfIID~~G~I~~~~~~ 137 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGIIQAIEVT 137 (187)
T ss_pred CcccCCceeeEEEEECCCCEEEEEEEe
Confidence 4211111127766665 6776665443
No 139
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.24 E-value=1.2e-05 Score=62.51 Aligned_cols=77 Identities=19% Similarity=0.326 Sum_probs=50.7
Q ss_pred hhHHHHHhc-CCCCceEEEEEec-------CCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh-----h-HHH---H
Q 025628 125 LQLEALLTE-GKTSRYWLVEFRA-------QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-----N-AAE---K 187 (250)
Q Consensus 125 ~~l~~~l~~-~~k~~~vlV~FyA-------~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~-----~-la~---k 187 (250)
+++++.+++ .+++++++|.|++ +|||.|+..+|++.+.-.... ++..++.|.++..+ + .-+ +
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-~~~~lv~v~VG~r~~Wkdp~n~fR~~p~ 84 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-ENARLVYVEVGDRPEWKDPNNPFRTDPD 84 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-TTEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-CCceEEEEEcCCHHHhCCCCCCceEcce
Confidence 456666632 2445668999986 599999999999987766643 38999999997332 1 222 4
Q ss_pred hCCccCCCCCCCCEEEEEeCC
Q 025628 188 FGISLGGSMGQLPTYILFENN 208 (250)
Q Consensus 188 ~~I~~~~~~~~lPTlilf~~G 208 (250)
+++.+ +||++-++.+
T Consensus 85 ~~l~~------IPTLi~~~~~ 99 (119)
T PF06110_consen 85 LKLKG------IPTLIRWETG 99 (119)
T ss_dssp C---S------SSEEEECTSS
T ss_pred eeeee------cceEEEECCC
Confidence 88888 9999998776
No 140
>PRK15000 peroxidase; Provisional
Probab=98.24 E-value=7.8e-06 Score=69.18 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=39.2
Q ss_pred CCceEEEEEec-CCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC
Q 025628 136 TSRYWLVEFRA-QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 179 (250)
Q Consensus 136 k~~~vlV~FyA-~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~ 179 (250)
+++++++.||+ +||+.|..+.|.+++..++++..+++++.|.+|
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D 77 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD 77 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 34569999999 599999999999999999998778999998887
No 141
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.15 E-value=1.5e-05 Score=67.47 Aligned_cols=42 Identities=12% Similarity=0.189 Sum_probs=35.8
Q ss_pred ceEE-EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC
Q 025628 138 RYWL-VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 179 (250)
Q Consensus 138 ~~vl-V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~ 179 (250)
++++ +.||++||+.|..+.+.++++.++++..+++++.|.++
T Consensus 28 k~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D 70 (202)
T PRK13190 28 KWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD 70 (202)
T ss_pred CEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3354 47899999999999999999999998778888888776
No 142
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=7.7e-07 Score=75.42 Aligned_cols=81 Identities=16% Similarity=0.301 Sum_probs=72.8
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeee
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFP 215 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~ 215 (250)
+.+..++.|||+||.+|+.+..+++.+++.. +++.|.+.+.++.++++..+.+.. .|+.+.+.+|+.+.|..
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~~eis~~~~v~~------vp~~~~~~~~~~v~~l~ 87 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEFPEISNLIAVEA------VPYFVFFFLGEKVDRLS 87 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhhhHHHHHHHHhc------Cceeeeeecchhhhhhh
Confidence 4445999999999999999999999999977 599999999999999999999999 99999999999999999
Q ss_pred CCcCCCccc
Q 025628 216 AFGFEEKFS 224 (250)
Q Consensus 216 g~~~~g~i~ 224 (250)
+.++...+.
T Consensus 88 ~~~~~~~~~ 96 (227)
T KOG0911|consen 88 GADPPFLVS 96 (227)
T ss_pred ccCcHHHHH
Confidence 986554433
No 143
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.14 E-value=7e-05 Score=58.66 Aligned_cols=107 Identities=13% Similarity=0.185 Sum_probs=81.0
Q ss_pred hhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEE
Q 025628 124 PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 203 (250)
Q Consensus 124 ~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTli 203 (250)
+-+.++++ .....+.+++-|.-+|-|.|.++..++.+.+++.+. -..++.||+++-|+..+-|.+.. .=|++
T Consensus 8 ~~~VDqAI-~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~Vpdfn~~yel~d------P~tvm 79 (133)
T PF02966_consen 8 GWHVDQAI-LSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDEVPDFNQMYELYD------PCTVM 79 (133)
T ss_dssp HHHHHHHH-HH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTTHCCHHHTTS-S------SEEEE
T ss_pred cchHHHHH-hccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEcccchhhhcccccCC------CeEEE
Confidence 45578877 444556699999999999999999999999999875 67899999999999999999987 44677
Q ss_pred EEeCCeEEEeeeCCcCCCccccccccHHHHhhhcc
Q 025628 204 LFENNAEINRFPAFGFEEKFSHPHITKKLIAHHFQ 238 (250)
Q Consensus 204 lf~~G~e~~r~~g~~~~g~i~~~~~~~~~i~~~f~ 238 (250)
+|-+|+.+.---|..+..++.-..-++++++...+
T Consensus 80 FF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie 114 (133)
T PF02966_consen 80 FFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIE 114 (133)
T ss_dssp EEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHH
T ss_pred EEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHH
Confidence 77688887766666666665544556777766543
No 144
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.09 E-value=2.2e-05 Score=64.16 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=56.1
Q ss_pred CChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhh-hH--HHHHHHcCCCCcEEEEEECCCChhHHHHh--------CC
Q 025628 122 LTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASR-IF--PELSIAYSNKNVSFGIVDLGLFPNAAEKF--------GI 190 (250)
Q Consensus 122 l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p-~~--~~l~~~y~~~~v~f~~VDv~~~~~la~k~--------~I 190 (250)
.+++.++.+- +.+|. ++|+++++||..|+.++. .| .++++..+. ++.=++||.++.|++.+.| |.
T Consensus 25 w~~ea~~~Ak-~e~Kp--Ifl~ig~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~Pdid~~y~~~~~~~~~~ 100 (163)
T PF03190_consen 25 WGEEALEKAK-KENKP--IFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREERPDIDKIYMNAVQAMSGS 100 (163)
T ss_dssp SSHHHHHHHH-HHT----EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT-HHHHHHHHHHHHHHHS-
T ss_pred CCHHHHHHHH-hcCCc--EEEEEEecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccCccHHHHHHHHHHHhcCC
Confidence 3456677776 66777 999999999999999886 45 344554443 6778899999999999988 55
Q ss_pred ccCCCCCCCCEEEEEe-CCeEEEeeeCC
Q 025628 191 SLGGSMGQLPTYILFE-NNAEINRFPAF 217 (250)
Q Consensus 191 ~~~~~~~~lPTlilf~-~G~e~~r~~g~ 217 (250)
.+ .|+.++.. +|+.+.--...
T Consensus 101 gG------wPl~vfltPdg~p~~~~tY~ 122 (163)
T PF03190_consen 101 GG------WPLTVFLTPDGKPFFGGTYF 122 (163)
T ss_dssp --------SSEEEEE-TTS-EEEEESS-
T ss_pred CC------CCceEEECCCCCeeeeeeec
Confidence 66 99988886 77776653333
No 145
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.03 E-value=3.2e-05 Score=65.45 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=36.9
Q ss_pred EEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC
Q 025628 140 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL 180 (250)
Q Consensus 140 vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~ 180 (250)
+++.||++|||.|....+.++++.++++..+++++.|.++.
T Consensus 29 vlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 29 ILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 56689999999999999999999999987789999988773
No 146
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.02 E-value=3e-05 Score=56.26 Aligned_cols=61 Identities=20% Similarity=0.354 Sum_probs=46.8
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh----hHHHHhC--CccCCCCCCCCEEEEEeCCeEE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP----NAAEKFG--ISLGGSMGQLPTYILFENNAEI 211 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~----~la~k~~--I~~~~~~~~lPTlilf~~G~e~ 211 (250)
++.|+.+|||.|++..+.++++..++ +++.+..+|+++++ ++.+..+ +.+ +|++. -+|+.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~~~~~~~el~~~~~~~~~~------vP~if--i~g~~i 69 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHAEGISKADLEKTVGKPVET------VPQIF--VDQKHI 69 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCCChHHHHHHHHHHCCCCCc------CCEEE--ECCEEE
Confidence 67799999999999999999999876 38899999998764 3443333 244 99865 477654
No 147
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.01 E-value=4.6e-05 Score=67.08 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=36.8
Q ss_pred ceEEEEEe-cCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC
Q 025628 138 RYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL 180 (250)
Q Consensus 138 ~~vlV~Fy-A~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~ 180 (250)
+++++.|| ++||++|..+.|.+++..++++..+++++.|.+|.
T Consensus 99 k~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 99 SYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34777777 89999999999999999999987788888888764
No 148
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.98 E-value=5e-05 Score=52.27 Aligned_cols=51 Identities=22% Similarity=0.438 Sum_probs=39.4
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHh----CCccCCCCCCCCEEEE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKF----GISLGGSMGQLPTYIL 204 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~----~I~~~~~~~~lPTlil 204 (250)
++.|+++||++|++..+.+++ .++.+..+|++..+...+.+ ++.+ +|+++.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~~~~~~------vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDEDPEALEELKKLNGYRS------VPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCCCHHHHHHHHHHcCCcc------cCEEEE
Confidence 467999999999999888765 26778889998877665555 4555 998865
No 149
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.94 E-value=6.3e-05 Score=65.93 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=54.9
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC-----------hhHHHHhCCccCCCCCCCCEEEE
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-----------PNAAEKFGISLGGSMGQLPTYIL 204 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~-----------~~la~k~~I~~~~~~~~lPTlil 204 (250)
..+.-++.||.+-|+.|+++.|++..++++| ++.+..|++|.. ...++++||.. +|++++
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~------~Pal~L 219 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKY------FPALYL 219 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCCCCCCccCChHHHHhcCCcc------CceEEE
Confidence 3345799999999999999999999999999 688888888754 44889999999 999999
Q ss_pred EeCC
Q 025628 205 FENN 208 (250)
Q Consensus 205 f~~G 208 (250)
.+.+
T Consensus 220 v~~~ 223 (256)
T TIGR02739 220 VNPK 223 (256)
T ss_pred EECC
Confidence 8754
No 150
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.93 E-value=5.5e-05 Score=64.74 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=37.2
Q ss_pred EEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC
Q 025628 140 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL 180 (250)
Q Consensus 140 vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~ 180 (250)
+|+.|+++|||.|..+.+.++++.+++...+++++.+.++.
T Consensus 32 VL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~ 72 (215)
T PRK13599 32 VLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ 72 (215)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 57799999999999999999999999987789999988874
No 151
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.90 E-value=8.4e-05 Score=52.90 Aligned_cols=60 Identities=18% Similarity=0.378 Sum_probs=46.6
Q ss_pred EEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeC
Q 025628 143 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPA 216 (250)
Q Consensus 143 ~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g 216 (250)
.+++++|+.|..+...++++..++ ++++-.+|+...+++ .+|||.+ +||+++ ||+ .++.|
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~~~~~~-~~ygv~~------vPalvI--ng~--~~~~G 63 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL---GIEVEIIDIEDFEEI-EKYGVMS------VPALVI--NGK--VVFVG 63 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT---TEEEEEEETTTHHHH-HHTT-SS------SSEEEE--TTE--EEEES
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc---CCeEEEEEccCHHHH-HHcCCCC------CCEEEE--CCE--EEEEe
Confidence 346888999999999999999987 477777888555555 9999999 999966 565 44556
No 152
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.90 E-value=8.5e-05 Score=63.59 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=36.6
Q ss_pred EEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC
Q 025628 140 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL 180 (250)
Q Consensus 140 vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~ 180 (250)
+|+.|+++||+.|..+.+.+++...+++..+++++.+.+|.
T Consensus 37 vLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds 77 (215)
T PRK13191 37 VLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS 77 (215)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 44588999999999999999999999987789999998873
No 153
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.89 E-value=2.7e-05 Score=65.06 Aligned_cols=43 Identities=7% Similarity=-0.032 Sum_probs=37.8
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 179 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~ 179 (250)
++++++|.|||+||++|+ ..|.++++.++|+.+++.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 345599999999999997 4889999999999889999999885
No 154
>PRK13189 peroxiredoxin; Provisional
Probab=97.87 E-value=9.4e-05 Score=63.61 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=36.1
Q ss_pred EEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC
Q 025628 140 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL 180 (250)
Q Consensus 140 vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~ 180 (250)
+|+.|+++||+.|..+.+.++++..+++..+++++.|.++.
T Consensus 39 vL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 39 VLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 55688999999999999999999999987789998888763
No 155
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.78 E-value=8e-05 Score=67.11 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=70.3
Q ss_pred CCccccccccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhh------hHHHHHHHc-CCCCcEEEEEECCCCh
Q 025628 110 QPVFQKLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASR------IFPELSIAY-SNKNVSFGIVDLGLFP 182 (250)
Q Consensus 110 ~p~~~~~~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p------~~~~l~~~y-~~~~v~f~~VDv~~~~ 182 (250)
-|.|.|...+..++..++.+.+ ++.+- ..|.|+.|-- .-+.... .+=+++++. ..+++.|+.||..++.
T Consensus 27 fP~YDGkDRVi~LneKNfk~~l-Kkyd~--l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~ 102 (383)
T PF01216_consen 27 FPEYDGKDRVIDLNEKNFKRAL-KKYDV--LVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDA 102 (383)
T ss_dssp SSS-SSS--CEEE-TTTHHHHH-HH-SE--EEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTH
T ss_pred CccCCCccceEEcchhHHHHHH-HhhcE--EEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHH
Confidence 3789999999999999999999 54444 7778887753 3333222 223444443 4568999999999999
Q ss_pred hHHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeCCcCCCcccccc
Q 025628 183 NAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFEEKFSHPH 227 (250)
Q Consensus 183 ~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g~~~~g~i~~~~ 227 (250)
.+|+|.|+.. .+++-+|++|+.+... |..+...++.|.
T Consensus 103 klAKKLgv~E------~~SiyVfkd~~~IEyd-G~~saDtLVeFl 140 (383)
T PF01216_consen 103 KLAKKLGVEE------EGSIYVFKDGEVIEYD-GERSADTLVEFL 140 (383)
T ss_dssp HHHHHHT--S------TTEEEEEETTEEEEE--S--SHHHHHHHH
T ss_pred HHHHhcCccc------cCcEEEEECCcEEEec-CccCHHHHHHHH
Confidence 9999999999 9999999999877654 655555555543
No 156
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.76 E-value=0.00023 Score=60.05 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=38.5
Q ss_pred CceEEEEEec-CCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC
Q 025628 137 SRYWLVEFRA-QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL 180 (250)
Q Consensus 137 ~~~vlV~FyA-~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~ 180 (250)
+++++|.||+ +||+.|....+.++++.++++..+++++.|+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 3458889995 8899999999999999999988899999998873
No 157
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.73 E-value=0.00015 Score=51.68 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=42.6
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh-----hHHHHhCCccCCCCCCCCEEEEEeCCeEEE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-----NAAEKFGISLGGSMGQLPTYILFENNAEIN 212 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~-----~la~k~~I~~~~~~~~lPTlilf~~G~e~~ 212 (250)
++.|+++|||.|++..+.++++.. ...+..+|.+... .+.+..|..+ +|++ |-+|+.+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~g~~~------~P~v--~~~g~~ig 65 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQELTGQRT------VPNV--FIGGKFIG 65 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHHHHhCCCC------CCeE--EECCEEEc
Confidence 467999999999999999988766 3466777776552 2344556777 9975 56776543
No 158
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.72 E-value=0.00035 Score=53.01 Aligned_cols=86 Identities=22% Similarity=0.239 Sum_probs=62.0
Q ss_pred ChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChh----HHHHhCCccCCCCCC
Q 025628 123 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN----AAEKFGISLGGSMGQ 198 (250)
Q Consensus 123 ~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~----la~k~~I~~~~~~~~ 198 (250)
+.+++++.+ +.++.+++++.=.++.||-+......|++......+ ++.++.+|+-++.+ +|++|||.- +
T Consensus 6 t~eql~~i~-~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~-~~~~y~l~v~~~R~vSn~IAe~~~V~H-----e 78 (105)
T PF11009_consen 6 TEEQLEEIL-EESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD-EIPVYYLDVIEYRPVSNAIAEDFGVKH-----E 78 (105)
T ss_dssp SHHHHHHHH-HH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHHHHHHHHHHT---------
T ss_pred CHHHHHHHH-HhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc-cceEEEEEEEeCchhHHHHHHHhCCCc-----C
Confidence 456799999 666666688877999999999999999998887765 49999999987754 688999976 5
Q ss_pred CCEEEEEeCCeEEEeee
Q 025628 199 LPTYILFENNAEINRFP 215 (250)
Q Consensus 199 lPTlilf~~G~e~~r~~ 215 (250)
=|-+++++||+.+..--
T Consensus 79 SPQ~ili~~g~~v~~aS 95 (105)
T PF11009_consen 79 SPQVILIKNGKVVWHAS 95 (105)
T ss_dssp SSEEEEEETTEEEEEEE
T ss_pred CCcEEEEECCEEEEECc
Confidence 79999999999887543
No 159
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.71 E-value=0.00021 Score=48.77 Aligned_cols=58 Identities=26% Similarity=0.369 Sum_probs=42.2
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHH----hCCccCCCCCCCCEEEEEeCCeEEEe
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEK----FGISLGGSMGQLPTYILFENNAEINR 213 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k----~~I~~~~~~~~lPTlilf~~G~e~~r 213 (250)
++.|.++|||+|++..+.+++.. +.+..+|++++++..+. .+..+ +|++ +.+|+.+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-------i~~~~~di~~~~~~~~~l~~~~~~~~------~P~~--~~~~~~igg 63 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-------IEFEEIDILEDGELREELKELSGWPT------VPQI--FINGEFIGG 63 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-------CcEEEEECCCCHHHHHHHHHHhCCCC------cCEE--EECCEEEec
Confidence 45789999999999999987654 66778999887764433 34445 8866 457765553
No 160
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.70 E-value=0.00019 Score=62.58 Aligned_cols=63 Identities=16% Similarity=0.253 Sum_probs=52.2
Q ss_pred CceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC-----------ChhHHHHhCCccCCCCCCCCEEEEE
Q 025628 137 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-----------FPNAAEKFGISLGGSMGQLPTYILF 205 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~-----------~~~la~k~~I~~~~~~~~lPTlilf 205 (250)
.++-|+.||.+-|+.|.++.|++..++++| ++.+..|++|. +...++++||.. +|++++.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~------~PAl~Lv 213 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKY------FPALMLV 213 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcc------cceEEEE
Confidence 335799999999999999999999999999 67777777763 223677899988 9999998
Q ss_pred eCC
Q 025628 206 ENN 208 (250)
Q Consensus 206 ~~G 208 (250)
+.+
T Consensus 214 ~~~ 216 (248)
T PRK13703 214 DPK 216 (248)
T ss_pred ECC
Confidence 744
No 161
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.64 E-value=0.0004 Score=46.75 Aligned_cols=54 Identities=20% Similarity=0.371 Sum_probs=41.2
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHH----HhCCccCCCCCCCCEEEEEeCCe
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAE----KFGISLGGSMGQLPTYILFENNA 209 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~----k~~I~~~~~~~~lPTlilf~~G~ 209 (250)
++.|..+|||.|++....+++ .++.+-.+|++.+++..+ ..|..+ +|++.+ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~~i~y~~~dv~~~~~~~~~l~~~~g~~~------~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------KGIPYEEVDVDEDEEAREELKELSGVRT------VPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------TTBEEEEEEGGGSHHHHHHHHHHHSSSS------SSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------cCCeeeEcccccchhHHHHHHHHcCCCc------cCEEEE--CCE
Confidence 467999999999999888832 268888999998865443 347777 998775 665
No 162
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.54 E-value=0.00036 Score=50.82 Aligned_cols=60 Identities=18% Similarity=0.358 Sum_probs=44.0
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh----hHHHHhCC--ccCCCCCCCCEEEEEeCCeE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP----NAAEKFGI--SLGGSMGQLPTYILFENNAE 210 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~----~la~k~~I--~~~~~~~~lPTlilf~~G~e 210 (250)
++.|..+|||.|++....++++..++. ++.+..+|++... ++.+..|- .+ +|++. -+|+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~~~~~~~~~l~~~~g~~~~t------VP~if--i~g~~ 67 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIHAEGISKADLEKTVGKPVET------VPQIF--VDEKH 67 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECCCCHHHHHHHHHHhCCCCCC------cCeEE--ECCEE
Confidence 567999999999999999998876543 6888889988644 34444442 44 99774 46654
No 163
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.43 E-value=0.00043 Score=52.70 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=67.8
Q ss_pred ccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHh---hhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCC
Q 025628 118 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRAS---RIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGG 194 (250)
Q Consensus 118 ~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~---p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~ 194 (250)
....++.+++++.+ ..... .|.|.+.-|..|.+.. =++.++.+.+.. .+..+.++-+....++.+||+..
T Consensus 10 g~~~vd~~~ld~~l-~~~~~---~vlf~~gDp~r~~E~~DvaVILPEL~~af~~-~~~~avv~~~~e~~L~~r~gv~~-- 82 (107)
T PF07449_consen 10 GWPRVDADTLDAFL-AAPGD---AVLFFAGDPARFPETADVAVILPELVKAFPG-RFRGAVVARAAERALAARFGVRR-- 82 (107)
T ss_dssp TEEEE-CCCHHHHH-HCCSC---EEEEESS-TTTSTTCCHHHHHHHHHHCTSTT-SEEEEEEEHHHHHHHHHHHT-TS--
T ss_pred CCeeechhhHHHHH-hCCCc---EEEEECCCCCcCcccccceeEcHHHHHhhhC-ccceEEECchhHHHHHHHhCCcc--
Confidence 34567777899998 55333 4556666665554443 478899988875 77888888777888999999999
Q ss_pred CCCCCCEEEEEeCCeEEEeeeCCcC
Q 025628 195 SMGQLPTYILFENNAEINRFPAFGF 219 (250)
Q Consensus 195 ~~~~lPTlilf~~G~e~~r~~g~~~ 219 (250)
.|+++++++|+.+..++|+.+
T Consensus 83 ----~PaLvf~R~g~~lG~i~gi~d 103 (107)
T PF07449_consen 83 ----WPALVFFRDGRYLGAIEGIRD 103 (107)
T ss_dssp ----SSEEEEEETTEEEEEEESSST
T ss_pred ----CCeEEEEECCEEEEEecCeec
Confidence 999999999999999998743
No 164
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.39 E-value=0.00099 Score=48.11 Aligned_cols=54 Identities=20% Similarity=0.418 Sum_probs=40.7
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYIL 204 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlil 204 (250)
+..|..+|||.|++....+++ .++.|-.+|++++++.++..... ..+++|+++.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~~~~~~~~~~~~~---g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RGFDFEMINVDRVPEAAETLRAQ---GFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHc---CCCCcCEEEE
Confidence 456889999999999888854 37889999999988776655432 2345998864
No 165
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.36 E-value=0.00074 Score=52.22 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=59.4
Q ss_pred HHHHHh-cCCCCceEEEEEecC----CChhhHHHh--hhHHHHHHHcCCCCcEEEEEECCCC--hhHHHHhCCccCCCCC
Q 025628 127 LEALLT-EGKTSRYWLVEFRAQ----CSSTCIRAS--RIFPELSIAYSNKNVSFGIVDLGLF--PNAAEKFGISLGGSMG 197 (250)
Q Consensus 127 l~~~l~-~~~k~~~vlV~FyA~----WC~~C~~~~--p~~~~l~~~y~~~~v~f~~VDv~~~--~~la~k~~I~~~~~~~ 197 (250)
+++++. .+..+|.++|++|++ ||..|+..- |.+.+.- + +++.+...|++.. ..++..+++.+
T Consensus 6 ~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l---n-~~fv~w~~dv~~~eg~~la~~l~~~~----- 76 (116)
T cd02991 6 YSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI---N-TRMLFWACSVAKPEGYRVSQALRERT----- 76 (116)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH---H-cCEEEEEEecCChHHHHHHHHhCCCC-----
Confidence 444442 234556699999999 899997654 2233332 2 3788899999754 45888999999
Q ss_pred CCCEEEEE---e-CCeEEEeeeCCcCCCc
Q 025628 198 QLPTYILF---E-NNAEINRFPAFGFEEK 222 (250)
Q Consensus 198 ~lPTlilf---~-~G~e~~r~~g~~~~g~ 222 (250)
+|+++++ + +.+.+.|..|..+..+
T Consensus 77 -~P~~~~l~~~~~~~~vv~~i~G~~~~~~ 104 (116)
T cd02991 77 -YPFLAMIMLKDNRMTIVGRLEGLIQPED 104 (116)
T ss_pred -CCEEEEEEecCCceEEEEEEeCCCCHHH
Confidence 9999988 3 3456789999854333
No 166
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.34 E-value=0.0015 Score=53.31 Aligned_cols=81 Identities=22% Similarity=0.411 Sum_probs=65.8
Q ss_pred cccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCC
Q 025628 119 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQ 198 (250)
Q Consensus 119 v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~ 198 (250)
+..+++++++... ..+. ..+++.|...-..........+.+++.++.+ ++.|+.+|.+.++..++.+|++. .+
T Consensus 79 v~~~t~~n~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~~f~~~d~~~~~~~~~~~~i~~----~~ 151 (184)
T PF13848_consen 79 VPELTPENFEKLF-SSPK-PPVLILFDNKDNESTEAFKKELQDIAKKFKG-KINFVYVDADDFPRLLKYFGIDE----DD 151 (184)
T ss_dssp CEEESTTHHHHHH-STSS-EEEEEEEETTTHHHHHHHHHHHHHHHHCTTT-TSEEEEEETTTTHHHHHHTTTTT----SS
T ss_pred ccccchhhHHHHh-cCCC-ceEEEEEEcCCchhHHHHHHHHHHHHHhcCC-eEEEEEeehHHhHHHHHHcCCCC----cc
Confidence 5667777777777 3332 2367778777788889999999999999986 79999999999999999999984 34
Q ss_pred CCEEEEEe
Q 025628 199 LPTYILFE 206 (250)
Q Consensus 199 lPTlilf~ 206 (250)
+|++++++
T Consensus 152 ~P~~vi~~ 159 (184)
T PF13848_consen 152 LPALVIFD 159 (184)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999998
No 167
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.32 E-value=0.0015 Score=46.64 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=40.6
Q ss_pred EEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChh---HHHHhCCccCCCCCCCCEEEEEeCCeE
Q 025628 140 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN---AAEKFGISLGGSMGQLPTYILFENNAE 210 (250)
Q Consensus 140 vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~---la~k~~I~~~~~~~~lPTlilf~~G~e 210 (250)
-++.|..+|||.|++....+++. ++.+-.+|++++.+ +.+..|..+ +|.+. -+|+.
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~-------gi~y~~idi~~~~~~~~~~~~~g~~~------vP~i~--i~g~~ 67 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEK-------GYDFEEIPLGNDARGRSLRAVTGATT------VPQVF--IGGKL 67 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHc-------CCCcEEEECCCChHHHHHHHHHCCCC------cCeEE--ECCEE
Confidence 46679999999999999988642 67777889887643 333445666 99774 47764
No 168
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.30 E-value=0.00099 Score=64.71 Aligned_cols=59 Identities=15% Similarity=0.330 Sum_probs=52.1
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCe
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNA 209 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~ 209 (250)
+--|.+++||.|.+....+.+++.+.. ++..-.+|.+.+++++++|+|.+ +|++++ ||+
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~~~~~~~~~v~~------vP~~~i--~~~ 538 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHFPDLKDEYGIMS------VPAIVV--DDQ 538 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECcccHHHHHhCCcee------cCEEEE--CCE
Confidence 445689999999999999999998753 89999999999999999999999 999887 454
No 169
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.28 E-value=0.0011 Score=46.48 Aligned_cols=60 Identities=13% Similarity=0.360 Sum_probs=43.7
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHh---CCccCCCCCCCCEEEEEeCCeEEEeeeCCc
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKF---GISLGGSMGQLPTYILFENNAEINRFPAFG 218 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~---~I~~~~~~~~lPTlilf~~G~e~~r~~g~~ 218 (250)
..|..++||.|++....+++ .++.|-.+|++++++..+++ |..+ +|++++ +|++ .+.|++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~~~~~~~~~~~~g~~~------vP~v~~--~g~~--~~~G~~ 64 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINIDEQPEAIDYVKAQGFRQ------VPVIVA--DGDL--SWSGFR 64 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHcCCcc------cCEEEE--CCCc--EEeccC
Confidence 45788999999999998864 27888889999998877766 4444 998644 4432 444543
No 170
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.24 E-value=0.0014 Score=46.44 Aligned_cols=55 Identities=16% Similarity=0.351 Sum_probs=40.3
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHh----CCccCCCCCCCCEEEEEeCCeEE
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKF----GISLGGSMGQLPTYILFENNAEI 211 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~----~I~~~~~~~~lPTlilf~~G~e~ 211 (250)
+.|+.+|||.|.+....+++. ++.+-.+|++.+++..+++ |..+ +|++ +-+|+.+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~di~~~~~~~~~~~~~~g~~~------vP~i--~i~g~~i 60 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK-------GVTFTEIRVDGDPALRDEMMQRSGRRT------VPQI--FIGDVHV 60 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc-------CCCcEEEEecCCHHHHHHHHHHhCCCC------cCEE--EECCEEE
Confidence 468899999999999999753 5677788888887665554 4444 9976 4466543
No 171
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.21 E-value=0.0029 Score=44.18 Aligned_cols=57 Identities=21% Similarity=0.396 Sum_probs=40.4
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHh----CCccCCCCCCCCEEEEEeCCeEE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKF----GISLGGSMGQLPTYILFENNAEI 211 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~----~I~~~~~~~~lPTlilf~~G~e~ 211 (250)
++.|..+|||.|.+....+++ .++.+-.+|++.+++..+++ +.. .++|++ +-+|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~~~~~~~~~~~~~~~~-----~~vP~v--~i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVDGDPALREEMINRSGGR-----RTVPQI--FIGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECCCCHHHHHHHHHHhCCC-----CccCEE--EECCEEE
Confidence 456889999999999988865 26788889999876655443 433 139966 4566543
No 172
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.19 E-value=0.0019 Score=62.16 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=60.3
Q ss_pred ccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCC
Q 025628 120 NKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQL 199 (250)
Q Consensus 120 ~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~l 199 (250)
..++++..+.+- +-+++ .-+-.|.+++||.|......+++++... +++..-.+|..++|+++++|+|.+ +
T Consensus 101 ~~l~~~~~~~i~-~~~~~-~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~--~~i~~~~id~~~~~~~~~~~~v~~------V 170 (517)
T PRK15317 101 PKLDQEVIEQIK-ALDGD-FHFETYVSLSCHNCPDVVQALNLMAVLN--PNITHTMIDGALFQDEVEARNIMA------V 170 (517)
T ss_pred CCCCHHHHHHHH-hcCCC-eEEEEEEcCCCCCcHHHHHHHHHHHHhC--CCceEEEEEchhCHhHHHhcCCcc------c
Confidence 344444443333 33344 2467899999999999999999999864 489999999999999999999999 9
Q ss_pred CEEEEEeCCe
Q 025628 200 PTYILFENNA 209 (250)
Q Consensus 200 PTlilf~~G~ 209 (250)
|++++ ||+
T Consensus 171 P~~~i--~~~ 178 (517)
T PRK15317 171 PTVFL--NGE 178 (517)
T ss_pred CEEEE--CCc
Confidence 99865 454
No 173
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.16 E-value=0.0032 Score=44.04 Aligned_cols=57 Identities=18% Similarity=0.428 Sum_probs=41.6
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHh----CCccCCCCCCCCEEEEEeCCeEEE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKF----GISLGGSMGQLPTYILFENNAEIN 212 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~----~I~~~~~~~~lPTlilf~~G~e~~ 212 (250)
++.|..+|||.|++....+++ .++.+-.+|+++.++..+++ +-.. +|++ |-+|+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~~~~~~~~el~~~~g~~~------vP~v--~i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEINIDIFPERKAELEERTGSSV------VPQI--FFNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHHhCCCC------cCEE--EECCEEEe
Confidence 567899999999999988875 26778889999887654443 3344 8966 45676444
No 174
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.09 E-value=0.0022 Score=48.12 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=38.2
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHH-------HHhCCccCCCCCCCCEEEEEeCCeEE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAA-------EKFGISLGGSMGQLPTYILFENNAEI 211 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la-------~k~~I~~~~~~~~lPTlilf~~G~e~ 211 (250)
++.|..+|||.|++....+++. ++.+-.+|+++.++.. +..|..+ +|.+ |-+|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~vdid~~~~~~~~~~~l~~~tg~~t------vP~V--fi~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-------GVNPAVHEIDKEPAGKDIENALSRLGCSPA------VPAV--FVGGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCCEEEEcCCCccHHHHHHHHHHhcCCCC------cCeE--EECCEEE
Confidence 5669999999999999887654 4555678887765532 2224455 9975 5577544
No 175
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0045 Score=55.19 Aligned_cols=90 Identities=14% Similarity=0.259 Sum_probs=70.0
Q ss_pred cccccccCChhhHHHHHhcCCCCceEEEEEec----CCChhhHHHhhhHHHHHHHcCC-----C--CcEEEEEECCCChh
Q 025628 115 KLGISNKLTPLQLEALLTEGKTSRYWLVEFRA----QCSSTCIRASRIFPELSIAYSN-----K--NVSFGIVDLGLFPN 183 (250)
Q Consensus 115 ~~~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA----~WC~~C~~~~p~~~~l~~~y~~-----~--~v~f~~VDv~~~~~ 183 (250)
.+..+..++++.+...+....++-..+|.|.| ..|.-|+.++.++.-+++.+.. + ++=|..||.++-|+
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 34567788888898888433344446777776 4799999999999888775421 1 46799999999999
Q ss_pred HHHHhCCccCCCCCCCCEEEEEeCCeE
Q 025628 184 AAEKFGISLGGSMGQLPTYILFENNAE 210 (250)
Q Consensus 184 la~k~~I~~~~~~~~lPTlilf~~G~e 210 (250)
.-+.++++. +|++++|...+.
T Consensus 118 ~Fq~l~ln~------~P~l~~f~P~~~ 138 (331)
T KOG2603|consen 118 VFQQLNLNN------VPHLVLFSPAKG 138 (331)
T ss_pred HHHHhcccC------CCeEEEeCCCcc
Confidence 999999999 999999965443
No 176
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.95 E-value=0.0014 Score=47.16 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=58.0
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeCCcCC
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFE 220 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g~~~~ 220 (250)
++.|..+.|+-|......++++..+. ++.+-.||+++++++.++|+. . +|.+.+ +|. +....
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~~~l~~vDI~~d~~l~~~Y~~-~------IPVl~~--~~~------~~~~~ 63 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---PFELEEVDIDEDPELFEKYGY-R------IPVLHI--DGI------RQFKE 63 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---TCEEEEEETTTTHHHHHHSCT-S------TSEEEE--TT-------GGGCT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---CceEEEEECCCCHHHHHHhcC-C------CCEEEE--cCc------ccccc
Confidence 57789999999999999998876644 689999999999999999996 5 796544 331 01112
Q ss_pred CccccccccHHHHhhhc
Q 025628 221 EKFSHPHITKKLIAHHF 237 (250)
Q Consensus 221 g~i~~~~~~~~~i~~~f 237 (250)
+...++.++++.+.+..
T Consensus 64 ~~~~~~~~d~~~L~~~L 80 (81)
T PF05768_consen 64 QEELKWRFDEEQLRAWL 80 (81)
T ss_dssp SEEEESSB-HHHHHHHH
T ss_pred cceeCCCCCHHHHHHHh
Confidence 55667788888877643
No 177
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.93 E-value=0.0023 Score=53.66 Aligned_cols=73 Identities=10% Similarity=0.064 Sum_probs=48.2
Q ss_pred CceEEEEEecCCChhhHHHhhhHHHHHHHc------------------------------------CCC----CcEEEEE
Q 025628 137 SRYWLVEFRAQCSSTCIRASRIFPELSIAY------------------------------------SNK----NVSFGIV 176 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y------------------------------------~~~----~v~f~~V 176 (250)
.+..++.|..+.||+|+++.+.+.+...++ ... ..+....
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~ 156 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDN 156 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCc
Confidence 456899999999999999999886511100 000 1112223
Q ss_pred ECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeCCcC
Q 025628 177 DLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGF 219 (250)
Q Consensus 177 Dv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g~~~ 219 (250)
+++++..+++++||.+ +||++ +++|+. .+|..+
T Consensus 157 ~i~~~~~l~~~~gi~g------tPtii-~~~G~~---~~G~~~ 189 (197)
T cd03020 157 PVAANLALGRQLGVNG------TPTIV-LADGRV---VPGAPP 189 (197)
T ss_pred hHHHHHHHHHHcCCCc------ccEEE-ECCCeE---ecCCCC
Confidence 3344556788899999 99997 788875 466644
No 178
>PHA03050 glutaredoxin; Provisional
Probab=96.88 E-value=0.0038 Score=47.64 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=38.2
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC---Chh----HHHHhCCccCCCCCCCCEEEEEeCCeEE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL---FPN----AAEKFGISLGGSMGQLPTYILFENNAEI 211 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~---~~~----la~k~~I~~~~~~~~lPTlilf~~G~e~ 211 (250)
++.|..+|||.|++....+++...+.. .|-.+|+++ .++ +.+.-|..+ +|++ |-+|+-+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~----~~~~i~i~~~~~~~~~~~~l~~~tG~~t------VP~I--fI~g~~i 80 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG----AYEIVDIKEFKPENELRDYFEQITGGRT------VPRI--FFGKTSI 80 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC----CcEEEECCCCCCCHHHHHHHHHHcCCCC------cCEE--EECCEEE
Confidence 566999999999999999877755332 355666665 222 233334444 9987 4466543
No 179
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.82 E-value=0.009 Score=41.55 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=39.2
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhH---HHHhCCccCCCCCCCCEEEEEeCCeEE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNA---AEKFGISLGGSMGQLPTYILFENNAEI 211 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~l---a~k~~I~~~~~~~~lPTlilf~~G~e~ 211 (250)
++.|..+|||.|.+....+++. ++.+-.+|+++++.. .+..|..+ +|.+ |-+|+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-------~i~~~~~~v~~~~~~~~~~~~~g~~~------vP~i--fi~g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-------GISYEEIPLGKDITGRSLRAVTGAMT------VPQV--FIDGELI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCcEEEECCCChhHHHHHHHhCCCC------cCeE--EECCEEE
Confidence 5678999999999998888742 677788888876632 22235555 9976 4567543
No 180
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.81 E-value=0.0037 Score=52.46 Aligned_cols=94 Identities=14% Similarity=0.147 Sum_probs=73.0
Q ss_pred cccccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCC
Q 025628 117 GISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSM 196 (250)
Q Consensus 117 ~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~ 196 (250)
+.|..+++..+-..+...+.+.+|+|..|...-|.|.-+...++.++.+|. .++|+++=.+..- ..|-=..
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp--~iKFVki~at~cI---pNYPe~n---- 161 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP--QIKFVKIPATTCI---PNYPESN---- 161 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC--cceEEeccccccc---CCCcccC----
Confidence 456777777766655577888889999999999999999999999999996 7999987654321 1222334
Q ss_pred CCCCEEEEEeCCeEEEeeeCCcCCC
Q 025628 197 GQLPTYILFENNAEINRFPAFGFEE 221 (250)
Q Consensus 197 ~~lPTlilf~~G~e~~r~~g~~~~g 221 (250)
+||+++|..|.....+.|.-.-|
T Consensus 162 --lPTl~VY~~G~lk~q~igll~lg 184 (240)
T KOG3170|consen 162 --LPTLLVYHHGALKKQMIGLLELG 184 (240)
T ss_pred --CCeEEEeecchHHhheehhhhhc
Confidence 99999999999888888775444
No 181
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.77 E-value=0.0034 Score=54.35 Aligned_cols=74 Identities=12% Similarity=0.241 Sum_probs=51.9
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEE-----------------------------------------
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFG----------------------------------------- 174 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~----------------------------------------- 174 (250)
+.+..++.|.-+.||.|+++.+.+.++.+. ++++.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 345689999999999999999988876431 22221
Q ss_pred ---EEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeCCcCCCcc
Q 025628 175 ---IVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFEEKF 223 (250)
Q Consensus 175 ---~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g~~~~g~i 223 (250)
..+++++.++++++||++ .||++ +.||+. ++|..+...+
T Consensus 182 ~~c~~~v~~~~~la~~lgi~g------TPtiv-~~~G~~---~~G~~~~~~L 223 (232)
T PRK10877 182 ASCDVDIADHYALGVQFGVQG------TPAIV-LSNGTL---VPGYQGPKEM 223 (232)
T ss_pred ccccchHHHhHHHHHHcCCcc------ccEEE-EcCCeE---eeCCCCHHHH
Confidence 122334556788999999 99998 778864 4787554444
No 182
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.76 E-value=0.0073 Score=58.13 Aligned_cols=75 Identities=17% Similarity=0.321 Sum_probs=59.1
Q ss_pred ccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCC
Q 025628 120 NKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQL 199 (250)
Q Consensus 120 ~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~l 199 (250)
..++++..+.+- +=+++ .-+--|.++.||.|......+.+++.+.. ++..-.+|..++++++++|++.+ +
T Consensus 102 ~~l~~~~~~~~~-~~~~~-~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~~~~~~~~~v~~------V 171 (515)
T TIGR03140 102 PKLDEGIIDRIR-RLNGP-LHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALFQDEVEALGIQG------V 171 (515)
T ss_pred CCCCHHHHHHHH-hcCCC-eEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhCHHHHHhcCCcc------c
Confidence 345544444333 32333 24677999999999999999999998754 89999999999999999999999 9
Q ss_pred CEEEE
Q 025628 200 PTYIL 204 (250)
Q Consensus 200 PTlil 204 (250)
|++++
T Consensus 172 P~~~i 176 (515)
T TIGR03140 172 PAVFL 176 (515)
T ss_pred CEEEE
Confidence 99876
No 183
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.68 E-value=0.0044 Score=52.57 Aligned_cols=90 Identities=19% Similarity=0.307 Sum_probs=73.8
Q ss_pred ccccC-ChhhHHHHHhcCC-CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCC
Q 025628 118 ISNKL-TPLQLEALLTEGK-TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGS 195 (250)
Q Consensus 118 ~v~~l-~~~~l~~~l~~~~-k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~ 195 (250)
.|.++ ++++|-+.+ ++. +..+++|..|-+-.+-|..+...+.=|+++|. .++|.++-. .+....++|..++
T Consensus 139 ~V~El~~gkqfld~i-dke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP--~vKFckiks-s~~gas~~F~~n~--- 211 (273)
T KOG3171|consen 139 FVYELETGKQFLDTI-DKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP--IVKFCKIKS-SNTGASDRFSLNV--- 211 (273)
T ss_pred eEEEeccchhHHHHH-hcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC--ceeEEEeee-ccccchhhhcccC---
Confidence 34555 457787888 444 66678899999999999999999999999996 799999874 3455788999999
Q ss_pred CCCCCEEEEEeCCeEEEeeeCC
Q 025628 196 MGQLPTYILFENNAEINRFPAF 217 (250)
Q Consensus 196 ~~~lPTlilf~~G~e~~r~~g~ 217 (250)
+||+.+|++|+.+..+..+
T Consensus 212 ---lP~LliYkgGeLIgNFv~v 230 (273)
T KOG3171|consen 212 ---LPTLLIYKGGELIGNFVSV 230 (273)
T ss_pred ---CceEEEeeCCchhHHHHHH
Confidence 9999999999988766654
No 184
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.62 E-value=0.0066 Score=44.48 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=50.3
Q ss_pred hhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEE
Q 025628 125 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYIL 204 (250)
Q Consensus 125 ~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlil 204 (250)
+.+++.+ ..++. ++|-|+.++|. .....|.+.+..+.. .+.|+.++ ++++++++++.. |++++
T Consensus 8 ~~l~~~~-~~~~~--~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~---~~~~~~~~~~~~-------~~i~l 70 (97)
T cd02981 8 EELEKFL-DKDDV--VVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTS---DKEVAKKLKVKP-------GSVVL 70 (97)
T ss_pred HHHHHHh-ccCCe--EEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEC---hHHHHHHcCCCC-------CceEE
Confidence 4466666 55555 88999999887 466778888888765 68887776 567888887654 88999
Q ss_pred EeCC
Q 025628 205 FENN 208 (250)
Q Consensus 205 f~~G 208 (250)
|+++
T Consensus 71 ~~~~ 74 (97)
T cd02981 71 FKPF 74 (97)
T ss_pred eCCc
Confidence 9765
No 185
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.61 E-value=0.0083 Score=42.96 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=43.8
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC--------------------------------hhHHHHh
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF--------------------------------PNAAEKF 188 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~--------------------------------~~la~k~ 188 (250)
+..|+.+.||.|..+.|.+.++....+. ++++....+.-. ...+++.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARAL 79 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Confidence 4679999999999999999998755443 677666654321 2345677
Q ss_pred CCccCCCCCCCCEEEEEe
Q 025628 189 GISLGGSMGQLPTYILFE 206 (250)
Q Consensus 189 ~I~~~~~~~~lPTlilf~ 206 (250)
|+.+ +||+++.+
T Consensus 80 g~~g------~Pt~v~~~ 91 (98)
T cd02972 80 GVTG------TPTFVVNG 91 (98)
T ss_pred CCCC------CCEEEECC
Confidence 8888 99998854
No 186
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0089 Score=42.99 Aligned_cols=60 Identities=15% Similarity=0.267 Sum_probs=38.4
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCe
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNA 209 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~ 209 (250)
++.|-.++||.|++....+. ..++.|..+|++..+....+--+......+++|++.+ +|+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence 45688999999999988876 2377888888887773111111222113444997655 554
No 187
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.51 E-value=0.016 Score=56.42 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=70.7
Q ss_pred HHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEe
Q 025628 127 LEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFE 206 (250)
Q Consensus 127 l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~ 206 (250)
+.+.+ ++-+....++.|..+.|..|.++...+++++. .+ +++++...|..++++.+++|++.. .|++.+.+
T Consensus 357 l~~~~-~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s-~~i~~~~~~~~~~~~~~~~~~v~~------~P~~~i~~ 427 (555)
T TIGR03143 357 LVGIF-GRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LS-EKLNSEAVNRGEEPESETLPKITK------LPTVALLD 427 (555)
T ss_pred HHHHH-HhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cC-CcEEEEEeccccchhhHhhcCCCc------CCEEEEEe
Confidence 66666 44444446778888899999999999999985 33 389998999999999999999999 99999996
Q ss_pred -CCeEE-EeeeCCcCCCcccccc
Q 025628 207 -NNAEI-NRFPAFGFEEKFSHPH 227 (250)
Q Consensus 207 -~G~e~-~r~~g~~~~g~i~~~~ 227 (250)
+|+.. .|+.|+..-.++..|+
T Consensus 428 ~~~~~~~i~f~g~P~G~Ef~s~i 450 (555)
T TIGR03143 428 DDGNYTGLKFHGVPSGHELNSFI 450 (555)
T ss_pred CCCcccceEEEecCccHhHHHHH
Confidence 55443 6888885544444443
No 188
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.49 E-value=0.035 Score=41.33 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=35.5
Q ss_pred CCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEE
Q 025628 147 QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEI 211 (250)
Q Consensus 147 ~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~ 211 (250)
+|||.|++....+.+. ++.+..+|++++++..+...-.+ ..+.+|.+ |-+|+-+
T Consensus 25 ~~Cp~C~~ak~lL~~~-------~i~~~~~di~~~~~~~~~l~~~t--g~~tvP~v--fi~g~~i 78 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-------GVPFAYVNVLEDPEIRQGIKEYS--NWPTIPQL--YVKGEFV 78 (97)
T ss_pred CCCchHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHh--CCCCCCEE--EECCEEE
Confidence 8999999999888664 56677899987776544332111 12238965 4567543
No 189
>PRK10638 glutaredoxin 3; Provisional
Probab=96.47 E-value=0.02 Score=41.05 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=40.1
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEIN 212 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~ 212 (250)
++.|..+|||.|++....+++. ++.+-.+|++.+++..+.+.-.. ...++|++ +.+|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------gi~y~~~dv~~~~~~~~~l~~~~--g~~~vP~i--~~~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------GVSFQEIPIDGDAAKREEMIKRS--GRTTVPQI--FIDAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCCCHHHHHHHHHHh--CCCCcCEE--EECCEEEe
Confidence 4567889999999999888753 56677789988775544432111 12349976 44676443
No 190
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=95.97 E-value=0.048 Score=47.76 Aligned_cols=78 Identities=8% Similarity=0.087 Sum_probs=51.8
Q ss_pred CceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC-------------------------------------
Q 025628 137 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG------------------------------------- 179 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~------------------------------------- 179 (250)
.+.+++.|.-+.||.|+++.+.+.++.+.- ++++..+-+.
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g---~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDSG---KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhcC---ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 455888999999999999998887654421 2333222210
Q ss_pred -------------CChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeCCcCCCcc
Q 025628 180 -------------LFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFEEKF 223 (250)
Q Consensus 180 -------------~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g~~~~g~i 223 (250)
++..+++++||++ .||+++-++.+++...+|..+..++
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~G------TPaiv~~d~~G~~~~v~G~~~~~~L 244 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANA------TPAIYYMDKDGTLQQVVGLPDPAQL 244 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCC------CCEEEEECCCCCEEEecCCCCHHHH
Confidence 1123566788888 9999987754567788888654433
No 191
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.83 E-value=0.047 Score=39.92 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=34.9
Q ss_pred CCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeE
Q 025628 147 QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAE 210 (250)
Q Consensus 147 ~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e 210 (250)
+|||.|++....+.+. ++.+-.+|++++++..+...-.+ ..+++|++ |-+|+-
T Consensus 21 ~~Cp~C~~ak~~L~~~-------~i~y~~idv~~~~~~~~~l~~~~--g~~tvP~v--fi~g~~ 73 (90)
T cd03028 21 PRCGFSRKVVQILNQL-------GVDFGTFDILEDEEVRQGLKEYS--NWPTFPQL--YVNGEL 73 (90)
T ss_pred CCCcHHHHHHHHHHHc-------CCCeEEEEcCCCHHHHHHHHHHh--CCCCCCEE--EECCEE
Confidence 7999999998888664 46677888887776544332111 12239976 557753
No 192
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=95.81 E-value=0.034 Score=42.45 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=59.1
Q ss_pred cccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHH---cCCCCcEEEEEECCCChhHHHHhCCccCCC
Q 025628 119 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIA---YSNKNVSFGIVDLGLFPNAAEKFGISLGGS 195 (250)
Q Consensus 119 v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~---y~~~~v~f~~VDv~~~~~la~k~~I~~~~~ 195 (250)
|.+++.++.+... +.+.+ ..+.|+ .-..-....+.+.+++++ +++ ++.|+.+|.+.....++.+|++.
T Consensus 1 ~~e~t~e~~~~~~-~~~~~--~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kg-ki~Fv~~d~~~~~~~~~~fgl~~--- 71 (111)
T cd03072 1 VREITFENAEELT-EEGLP--FLILFH--DKDDLESLKEFKQAVARQLISEKG-AINFLTADGDKFRHPLLHLGKTP--- 71 (111)
T ss_pred CcccccccHHHHh-cCCCC--eEEEEe--cchHHHHHHHHHHHHHHHHHhcCc-eEEEEEEechHhhhHHHHcCCCH---
Confidence 3566777777766 55555 344455 223346678889999999 987 79999999999988999999986
Q ss_pred CCCCCEEEEEeC
Q 025628 196 MGQLPTYILFEN 207 (250)
Q Consensus 196 ~~~lPTlilf~~ 207 (250)
.++|.+.+.+.
T Consensus 72 -~~~P~i~i~~~ 82 (111)
T cd03072 72 -ADLPVIAIDSF 82 (111)
T ss_pred -hHCCEEEEEcc
Confidence 35899888765
No 193
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.80 E-value=0.028 Score=44.10 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=31.8
Q ss_pred CceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEEC
Q 025628 137 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDL 178 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv 178 (250)
.+..++.|+.++||+|+++.|.+.++..+++ ++++...++
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~~~ 44 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP--DVRVVFKEF 44 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC--CceEEEEeC
Confidence 3458899999999999999999999887764 455555554
No 194
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.11 Score=42.34 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=57.2
Q ss_pred eEEEEEe-cCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC---------------------ChhHHHHhCCccCCCC
Q 025628 139 YWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL---------------------FPNAAEKFGISLGGSM 196 (250)
Q Consensus 139 ~vlV~Fy-A~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~---------------------~~~la~k~~I~~~~~~ 196 (250)
.++++|| .+++|-|..++-.|.+...+++..+..++.|..|. +..+++.||+-.....
T Consensus 32 ~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~ 111 (157)
T COG1225 32 PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKM 111 (157)
T ss_pred cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccccccc
Confidence 4899998 79999999999999999999987788988888762 3456777776442110
Q ss_pred ------CCCC-EEEEEeCCeEEEeeeCCcCCC
Q 025628 197 ------GQLP-TYILFENNAEINRFPAFGFEE 221 (250)
Q Consensus 197 ------~~lP-Tlilf~~G~e~~r~~g~~~~g 221 (250)
...+ |+++-++|+...-...+...+
T Consensus 112 ~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~ 143 (157)
T COG1225 112 YGKEYMGIERSTFVIDPDGKIRYVWRKVKVKG 143 (157)
T ss_pred CccccccccceEEEECCCCeEEEEecCCCCcc
Confidence 1233 444445676666654444443
No 195
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=95.47 E-value=0.16 Score=39.55 Aligned_cols=88 Identities=22% Similarity=0.277 Sum_probs=58.7
Q ss_pred ccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHH-HHc-CCCCcEEEEEECC-----CChhHHHHhCCcc
Q 025628 120 NKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELS-IAY-SNKNVSFGIVDLG-----LFPNAAEKFGISL 192 (250)
Q Consensus 120 ~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~-~~y-~~~~v~f~~VDv~-----~~~~la~k~~I~~ 192 (250)
..+++-+|+..+ .+.+- +||.|=... |--+-...|.+++ +.. ..+++-++.|-+. ++.+++++|+++.
T Consensus 7 v~LD~~tFdKvi-~kf~~--~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 7 VPLDELTFDKVI-PKFKY--VLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp EEESTTHHHHHG-GGSSE--EEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred eeccceehhhee-ccCce--EEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 567777899999 66554 999995433 2334445677777 333 3457888888775 5678999999976
Q ss_pred CCCCCCCCEEEEEe-CCeEEEeeeC
Q 025628 193 GGSMGQLPTYILFE-NNAEINRFPA 216 (250)
Q Consensus 193 ~~~~~~lPTlilf~-~G~e~~r~~g 216 (250)
...|.+.+|. ++++..++|.
T Consensus 82 ----e~fPv~~LF~~~~~~pv~~p~ 102 (126)
T PF07912_consen 82 ----EDFPVIYLFVGDKEEPVRYPF 102 (126)
T ss_dssp ----CC-SEEEEEESSTTSEEEE-T
T ss_pred ----ccCCEEEEecCCCCCCccCCc
Confidence 4599999997 5666667743
No 196
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.36 E-value=0.063 Score=50.37 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=30.7
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHH
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAA 185 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la 185 (250)
++.|..+|||+|++....+++. ++.|-.+|+++.++..
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------gi~~~~idi~~~~~~~ 41 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------DIPFTQISLDDDVKRA 41 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCeEEEECCCChhHH
Confidence 5679999999999998887652 6788889999777533
No 197
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=95.06 E-value=0.099 Score=36.90 Aligned_cols=59 Identities=19% Similarity=0.128 Sum_probs=49.9
Q ss_pred EEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEE
Q 025628 140 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYIL 204 (250)
Q Consensus 140 vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlil 204 (250)
.+..|=|.-.+.+++....+.++.+++......+-.||+.++|++|+.++|.. .||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivA------tPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVA------TPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEE------echhhh
Confidence 34455566668999999999999888876689999999999999999999999 999763
No 198
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=94.82 E-value=0.11 Score=38.04 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=58.2
Q ss_pred ceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeCC
Q 025628 138 RYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAF 217 (250)
Q Consensus 138 ~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g~ 217 (250)
.+++=.|.|.-.+.+++....+.++.+++-.....+-.||+.++|++|+.++|.. .||++=-. -....|+.|-
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvA------TPtLIK~~-P~P~rriiGd 75 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILA------TPTLSKIL-PPPVRKIIGD 75 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEE------ecHHhhcC-CCCcceeecc
Confidence 3455578899999999999999998887766568899999999999999999999 99977432 2244555554
Q ss_pred c
Q 025628 218 G 218 (250)
Q Consensus 218 ~ 218 (250)
.
T Consensus 76 l 76 (87)
T TIGR02654 76 L 76 (87)
T ss_pred c
Confidence 3
No 199
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=94.82 E-value=0.066 Score=42.10 Aligned_cols=84 Identities=15% Similarity=0.243 Sum_probs=57.2
Q ss_pred cccCChhh-HHHHHhcCCCCceEEEEEecC---CChhhH-HHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccC
Q 025628 119 SNKLTPLQ-LEALLTEGKTSRYWLVEFRAQ---CSSTCI-RASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLG 193 (250)
Q Consensus 119 v~~l~~~~-l~~~l~~~~k~~~vlV~FyA~---WC~~C~-~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~ 193 (250)
+.+++.++ +++.= .+ ++ .-+|-|--. ..+.+. +....+.+++++++++.+.|+.+|.++++...+.||+.+
T Consensus 4 ~~~l~~~~~~~~~C-~~-~~-~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~- 79 (130)
T cd02983 4 IIELTSEDVFEETC-EE-KQ-LCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGG- 79 (130)
T ss_pred eEEecCHHHHHhhc-cC-CC-eEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCc-
Confidence 45555444 45444 22 33 345555331 233343 456778999999998559999999999999999999964
Q ss_pred CCCCCCCEEEEEeCCe
Q 025628 194 GSMGQLPTYILFENNA 209 (250)
Q Consensus 194 ~~~~~lPTlilf~~G~ 209 (250)
.+.|++++++..+
T Consensus 80 ---~~~P~v~i~~~~~ 92 (130)
T cd02983 80 ---FGYPAMVAINFRK 92 (130)
T ss_pred ---cCCCEEEEEeccc
Confidence 2499999987643
No 200
>PRK10824 glutaredoxin-4; Provisional
Probab=94.79 E-value=0.15 Score=39.42 Aligned_cols=71 Identities=10% Similarity=0.199 Sum_probs=42.9
Q ss_pred hHHHHHhcCCCCceEEEEEec-----CCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCC
Q 025628 126 QLEALLTEGKTSRYWLVEFRA-----QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLP 200 (250)
Q Consensus 126 ~l~~~l~~~~k~~~vlV~FyA-----~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lP 200 (250)
..++.+ ++ .+ |+| |-. ||||.|++....+.+.. +.+..+|++.++++.+...-. ..++.+|
T Consensus 7 ~v~~~I-~~-~~--Vvv-f~Kg~~~~p~Cpyc~~ak~lL~~~~-------i~~~~idi~~d~~~~~~l~~~--sg~~TVP 72 (115)
T PRK10824 7 KIQRQI-AE-NP--ILL-YMKGSPKLPSCGFSAQAVQALSACG-------ERFAYVDILQNPDIRAELPKY--ANWPTFP 72 (115)
T ss_pred HHHHHH-hc-CC--EEE-EECCCCCCCCCchHHHHHHHHHHcC-------CCceEEEecCCHHHHHHHHHH--hCCCCCC
Confidence 356666 33 34 444 555 59999999998887753 445567888776654443222 1233488
Q ss_pred EEEEEeCCeEEE
Q 025628 201 TYILFENNAEIN 212 (250)
Q Consensus 201 Tlilf~~G~e~~ 212 (250)
.+ |-+|+-++
T Consensus 73 QI--FI~G~~IG 82 (115)
T PRK10824 73 QL--WVDGELVG 82 (115)
T ss_pred eE--EECCEEEc
Confidence 54 45776443
No 201
>PRK09301 circadian clock protein KaiB; Provisional
Probab=94.54 E-value=0.14 Score=38.57 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=59.9
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeee
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFP 215 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~ 215 (250)
+..+++=.|.|.-.+..++....+.++.+++-.....+-.||+.++|.+|+.++|.. .||++=-. -....|+.
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvA------TPTLIK~~-P~P~rrii 76 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILA------TPTLAKIL-PPPVRKII 76 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEE------ecHHhhcC-CCCcceee
Confidence 344566688899999999999999998887766578899999999999999999999 99976432 22455555
Q ss_pred CCc
Q 025628 216 AFG 218 (250)
Q Consensus 216 g~~ 218 (250)
|--
T Consensus 77 GDl 79 (103)
T PRK09301 77 GDL 79 (103)
T ss_pred ccc
Confidence 543
No 202
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.18 Score=49.60 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=67.3
Q ss_pred ChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhh-H--HHHHHHcCCCCcEEEEEECCCChhHHHHhC-----CccCC
Q 025628 123 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRI-F--PELSIAYSNKNVSFGIVDLGLFPNAAEKFG-----ISLGG 194 (250)
Q Consensus 123 ~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~-~--~~l~~~y~~~~v~f~~VDv~~~~~la~k~~-----I~~~~ 194 (250)
.++.|++.- +.+|+ +++....+||.-|.-|+.. | +++++-.+. ++.=+|||-++-|++.+.|. +.+
T Consensus 32 ~~eAf~~A~-~edkP--IflSIGys~CHWChVM~~ESf~d~eiA~~lN~-~FV~IKVDREERPDvD~~Ym~~~q~~tG-- 105 (667)
T COG1331 32 GEEAFAKAK-EEDKP--ILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-NFVPVKVDREERPDVDSLYMNASQAITG-- 105 (667)
T ss_pred CHHHHHHHH-HhCCC--EEEEeccccccchHHHhhhcCCCHHHHHHHHh-CceeeeEChhhccCHHHHHHHHHHHhcc--
Confidence 567788877 77777 9999999999999998865 4 345555443 78888999999999988885 233
Q ss_pred CCCCCCEEE-EEeCCeEEEeeeCCcCCCc
Q 025628 195 SMGQLPTYI-LFENNAEINRFPAFGFEEK 222 (250)
Q Consensus 195 ~~~~lPTli-lf~~G~e~~r~~g~~~~g~ 222 (250)
+.+.|-.+ +--+|+...--.-+.++++
T Consensus 106 -~GGWPLtVfLTPd~kPFfagTY~P~e~r 133 (667)
T COG1331 106 -QGGWPLTVFLTPDGKPFFAGTYFPKEDR 133 (667)
T ss_pred -CCCCceeEEECCCCceeeeeeecCCccc
Confidence 33588544 4468888765555544433
No 203
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.29 Score=37.07 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=42.7
Q ss_pred HHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEe
Q 025628 127 LEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFE 206 (250)
Q Consensus 127 l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~ 206 (250)
.++.+ ..++ +|.|..+||+.|+.+...|.+ .+ .+.+++.+|-+.+..--+++-... ..++.+|.+ |-
T Consensus 7 v~~~i--~~~~---VVifSKs~C~~c~~~k~ll~~----~~-v~~~vvELD~~~~g~eiq~~l~~~-tg~~tvP~v--FI 73 (104)
T KOG1752|consen 7 VRKMI--SENP---VVIFSKSSCPYCHRAKELLSD----LG-VNPKVVELDEDEDGSEIQKALKKL-TGQRTVPNV--FI 73 (104)
T ss_pred HHHHh--hcCC---EEEEECCcCchHHHHHHHHHh----CC-CCCEEEEccCCCCcHHHHHHHHHh-cCCCCCCEE--EE
Confidence 55555 2333 466999999999998877877 22 256777777765554333222111 122348955 45
Q ss_pred CCeEE
Q 025628 207 NNAEI 211 (250)
Q Consensus 207 ~G~e~ 211 (250)
+|+-+
T Consensus 74 ~Gk~i 78 (104)
T KOG1752|consen 74 GGKFI 78 (104)
T ss_pred CCEEE
Confidence 77644
No 204
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.82 E-value=0.22 Score=39.49 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=35.5
Q ss_pred CceEEEEEecCCChhhHHHhhhHHHHHHHc-CCCCcEEEEEECC
Q 025628 137 SRYWLVEFRAQCSSTCIRASRIFPELSIAY-SNKNVSFGIVDLG 179 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y-~~~~v~f~~VDv~ 179 (250)
.+.+++.|...-||+|.++.+.+.++.+++ ...++.|...++.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 345899999999999999999999998888 3348999988874
No 205
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=93.46 E-value=0.13 Score=41.53 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=33.5
Q ss_pred eEEEEEecCCChhhHHH-hhhHHHHHHHcCCCCc-EEEEEECC
Q 025628 139 YWLVEFRAQCSSTCIRA-SRIFPELSIAYSNKNV-SFGIVDLG 179 (250)
Q Consensus 139 ~vlV~FyA~WC~~C~~~-~p~~~~l~~~y~~~~v-~f~~VDv~ 179 (250)
.+|+.|.+.|||.|... .+.+.+..+++...+. .++.+..+
T Consensus 32 vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 32 VVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred EEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 35666679999999999 9999999888876677 47777765
No 206
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.45 E-value=0.15 Score=41.26 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=33.1
Q ss_pred ceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEEC
Q 025628 138 RYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDL 178 (250)
Q Consensus 138 ~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv 178 (250)
+..+++|+...||+|+.+++.+.++..+++. ++.+..+.+
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~~~ 55 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKVPV 55 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEcCC
Confidence 3489999999999999999999999888854 677665554
No 207
>PTZ00062 glutaredoxin; Provisional
Probab=92.87 E-value=0.61 Score=39.61 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=35.1
Q ss_pred CCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEE
Q 025628 147 QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEI 211 (250)
Q Consensus 147 ~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~ 211 (250)
||||.|++....+.+. ++.+..+|++++++..+...-. ..++.+|.+. -+|+-+
T Consensus 126 p~C~~C~~~k~~L~~~-------~i~y~~~DI~~d~~~~~~l~~~--sg~~TvPqVf--I~G~~I 179 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS-------GVKYETYNIFEDPDLREELKVY--SNWPTYPQLY--VNGELI 179 (204)
T ss_pred CCChhHHHHHHHHHHc-------CCCEEEEEcCCCHHHHHHHHHH--hCCCCCCeEE--ECCEEE
Confidence 7999999998888743 5677889999887654433211 1123388554 466543
No 208
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=92.53 E-value=0.34 Score=36.94 Aligned_cols=55 Identities=15% Similarity=0.294 Sum_probs=44.6
Q ss_pred hhhHHHhhhHHHHHHHcC-CCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeC
Q 025628 150 STCIRASRIFPELSIAYS-NKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFEN 207 (250)
Q Consensus 150 ~~C~~~~p~~~~l~~~y~-~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~ 207 (250)
..-....+.+.+++++++ + ++.|+.+|.++.....+.||+..+.. ..|++.+.+.
T Consensus 31 ~~~~~~~~~~~~vAk~fk~g-ki~Fv~~D~~~~~~~l~~fgl~~~~~--~~P~~~i~~~ 86 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDR-KLNFAVADKEDFSHELEEFGLDFSGG--EKPVVAIRTA 86 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCC-eEEEEEEcHHHHHHHHHHcCCCcccC--CCCEEEEEeC
Confidence 444667888999999998 5 79999999999888999999987211 2899998764
No 209
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=92.36 E-value=0.2 Score=42.34 Aligned_cols=38 Identities=8% Similarity=0.232 Sum_probs=32.0
Q ss_pred EEEEEecCCChhhHHHhhhH---HHHHHHcCCCCcEEEEEEC
Q 025628 140 WLVEFRAQCSSTCIRASRIF---PELSIAYSNKNVSFGIVDL 178 (250)
Q Consensus 140 vlV~FyA~WC~~C~~~~p~~---~~l~~~y~~~~v~f~~VDv 178 (250)
-+|+|+.-.||+|.+++|.+ +.+.+.+.+ ++++.++.+
T Consensus 40 ~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~~ 80 (207)
T PRK10954 40 QVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYHV 80 (207)
T ss_pred eEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEecc
Confidence 69999999999999999976 788888865 777776665
No 210
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=91.77 E-value=0.057 Score=48.28 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=49.4
Q ss_pred HHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEE
Q 025628 127 LEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILF 205 (250)
Q Consensus 127 l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf 205 (250)
.++.+ ..++..++=..||++|||..+..+|.++-.+..++. .-.|+.=+....+...++|++.+ .|+.++.
T Consensus 67 l~~~i-h~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~------~ps~~~~ 137 (319)
T KOG2640|consen 67 LLDAI-HGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHS------EPSNLML 137 (319)
T ss_pred HHHhh-ccccCCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhcccccc------CCcceee
Confidence 34444 555566688999999999999999999888887762 22233222234566778888877 8877664
No 211
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=91.12 E-value=1.1 Score=30.67 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=32.6
Q ss_pred EEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh-hHHHHhCCccCCCCCCCCEEEEEeCCe
Q 025628 143 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-NAAEKFGISLGGSMGQLPTYILFENNA 209 (250)
Q Consensus 143 ~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~-~la~k~~I~~~~~~~~lPTlilf~~G~ 209 (250)
.|+.+||+.|++..-.+++... .++...+|....+ +..+.... +++|++.. ++|.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~gl-----~~e~~~v~~~~~~~~~~~~np~------~~vP~L~~-~~g~ 58 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAGI-----TVELREVELKNKPAEMLAASPK------GTVPVLVL-GNGT 58 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcCC-----CcEEEEeCCCCCCHHHHHHCCC------CCCCEEEE-CCCc
Confidence 4778999999998777765543 3455566654332 23322222 45998753 3354
No 212
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=90.37 E-value=0.11 Score=37.59 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=46.0
Q ss_pred EecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEE
Q 025628 144 FRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 203 (250)
Q Consensus 144 FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTli 203 (250)
|=|.-.+.+++....+..+.+++-..+..+-.||+.++|++|+.++|.. .||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivA------tPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVA------TPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEEC------HHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeee------cceEe
Confidence 3445556778888889999888776689999999999999999999999 99876
No 213
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=89.62 E-value=1.4 Score=35.44 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=37.9
Q ss_pred EEEecC------CChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCC--CCCCCCEEEEEeCCeEE
Q 025628 142 VEFRAQ------CSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGG--SMGQLPTYILFENNAEI 211 (250)
Q Consensus 142 V~FyA~------WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~--~~~~lPTlilf~~G~e~ 211 (250)
+.|.++ +|+.|++....|++. ++.|-.+|++.+++..++..-.... ....+|.+ |-+|+-+
T Consensus 3 vlYttsl~giR~t~~~C~~ak~iL~~~-------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqV--FI~G~~I 71 (147)
T cd03031 3 VLYTTSLRGVRKTFEDCNNVRAILESF-------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRV--FVDGRYL 71 (147)
T ss_pred EEEEcCCcCCCCcChhHHHHHHHHHHC-------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEE--EECCEEE
Confidence 456666 899999998888654 5778889998876654433211100 12338854 4566544
No 214
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=89.44 E-value=0.57 Score=34.99 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=26.6
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChh
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN 183 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~ 183 (250)
..|+.++|+.|++....+++. ++.|-.+|+.+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~ 36 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-------GIEYEFIDYLKEPP 36 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCCcEEEeeccCCC
Confidence 458899999999998777552 66777888876543
No 215
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=88.99 E-value=3.6 Score=31.06 Aligned_cols=78 Identities=12% Similarity=0.208 Sum_probs=53.5
Q ss_pred hhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC--ChhHHHHhCCccCCCCCCCCE-
Q 025628 125 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL--FPNAAEKFGISLGGSMGQLPT- 201 (250)
Q Consensus 125 ~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~--~~~la~k~~I~~~~~~~~lPT- 201 (250)
.+|..++ ...++ |+|.|..+-- .-......+.+.+.+.++ .-.+..|||+. ...+|+++.|+.+... -|.
T Consensus 10 KdfKKLL-RTr~N--VLvLy~ks~k-~a~~~Lk~~~~~A~~vkG-~gT~~~vdCgd~e~kKLCKKlKv~~~~kp--~~~~ 82 (112)
T cd03067 10 KDFKKLL-RTRNN--VLVLYSKSAK-SAEALLKLLSDVAQAVKG-QGTIAWIDCGDSESRKLCKKLKVDPSSKP--KPVE 82 (112)
T ss_pred HHHHHHH-hhcCc--EEEEEecchh-hHHHHHHHHHHHHHHhcC-ceeEEEEecCChHHHHHHHHHccCCCCCC--Ccch
Confidence 5688888 55566 7776665533 333444578888888776 56788999986 6779999999843322 453
Q ss_pred EEEEeCCe
Q 025628 202 YILFENNA 209 (250)
Q Consensus 202 lilf~~G~ 209 (250)
+.-|++|.
T Consensus 83 LkHYKdG~ 90 (112)
T cd03067 83 LKHYKDGD 90 (112)
T ss_pred hhcccCCC
Confidence 44567874
No 216
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=87.98 E-value=1.3 Score=35.80 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=52.2
Q ss_pred HHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCC-eEEEeeeCC-cCCCcccccc----
Q 025628 154 RASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENN-AEINRFPAF-GFEEKFSHPH---- 227 (250)
Q Consensus 154 ~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G-~e~~r~~g~-~~~g~i~~~~---- 227 (250)
.....|.++++++.+ .+.|+.++ .+++++++++.. |++++++++ +....+.|. .+...+.+|+
T Consensus 7 ~~~~~f~~~A~~~~~-~~~F~~~~---~~~~~~~~~~~~-------p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKG-DYQFGVTF---NEELAKKYGIKE-------PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEEE----HHHHHHCTCSS-------SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcC-CcEEEEEc---HHHHHHHhCCCC-------CcEEEeccCCCCceecccccCCHHHHHHHHHHhc
Confidence 345678899999986 69999888 678999999986 999999984 334555654 3444455543
Q ss_pred ------ccHHHHhhhcccc
Q 025628 228 ------ITKKLIAHHFQLD 240 (250)
Q Consensus 228 ------~~~~~i~~~f~l~ 240 (250)
+|.++..+.++-+
T Consensus 76 ~P~v~~~t~~n~~~~~~~~ 94 (184)
T PF13848_consen 76 FPLVPELTPENFEKLFSSP 94 (184)
T ss_dssp STSCEEESTTHHHHHHSTS
T ss_pred cccccccchhhHHHHhcCC
Confidence 4555555555443
No 217
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=86.21 E-value=1.6 Score=33.27 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=27.9
Q ss_pred EEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhH
Q 025628 143 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNA 184 (250)
Q Consensus 143 ~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~l 184 (250)
.|+.++|+.|++....+++ .++.+-.+|+.+.+..
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~ 37 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPT 37 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhh
Confidence 5789999999999887766 2677888898776543
No 218
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=85.84 E-value=3.5 Score=27.86 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=29.5
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEE
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 203 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTli 203 (250)
..|+.++|+.|++..-.+++....| ....+|....+....+.+ . .+++|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~-----~~~~v~~~~~~~~~~~~~--p---~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV-----EIIDVDPDNPPEDLAELN--P---YGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc-----EEEEcCCCCCCHHHHhhC--C---CCCCCEEE
Confidence 3577899999999977765544333 333455443332222221 1 23699664
No 219
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=85.15 E-value=2.4 Score=28.78 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=16.6
Q ss_pred EEecCCChhhHHHhhhHHHHHH
Q 025628 143 EFRAQCSSTCIRASRIFPELSI 164 (250)
Q Consensus 143 ~FyA~WC~~C~~~~p~~~~l~~ 164 (250)
.++.++||.|++..-.++....
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl 24 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI 24 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC
Confidence 4678899999998877755433
No 220
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=84.89 E-value=1.7 Score=32.96 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=27.2
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChh
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN 183 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~ 183 (250)
..|+.++|+.|++....+++ .++.|-.+|+.+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~ 36 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPP 36 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCceEEecccCCcc
Confidence 35889999999999877755 267788888876654
No 221
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=84.70 E-value=7.3 Score=28.77 Aligned_cols=74 Identities=15% Similarity=0.151 Sum_probs=45.2
Q ss_pred hHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEE
Q 025628 126 QLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILF 205 (250)
Q Consensus 126 ~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf 205 (250)
++.+.+ ++=++...++.|..+. +.|.++...+++++..- +++++-..|.+. . .|++.+.
T Consensus 9 qL~~~f-~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS--dkI~~~~~~~~~-----------~------~P~~~i~ 67 (94)
T cd02974 9 QLKAYL-ERLENPVELVASLDDS-EKSAELLELLEEIASLS--DKITLEEDNDDE-----------R------KPSFSIN 67 (94)
T ss_pred HHHHHH-HhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhC--CceEEEEecCCC-----------C------CCEEEEe
Confidence 455555 4333333444554444 99999998888888743 256654433211 2 7999998
Q ss_pred eCCeEE-EeeeCCcCC
Q 025628 206 ENNAEI-NRFPAFGFE 220 (250)
Q Consensus 206 ~~G~e~-~r~~g~~~~ 220 (250)
++|+.. .|+.|+..-
T Consensus 68 ~~~~~~gIrF~GiP~G 83 (94)
T cd02974 68 RPGEDTGIRFAGIPMG 83 (94)
T ss_pred cCCCcccEEEEecCCc
Confidence 887433 588887543
No 222
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=84.45 E-value=4.1 Score=30.13 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=45.4
Q ss_pred ccC-ChhhHHHHHhc-CCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCC
Q 025628 120 NKL-TPLQLEALLTE-GKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMG 197 (250)
Q Consensus 120 ~~l-~~~~l~~~l~~-~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~ 197 (250)
..+ +.+++++.+ + .++. .+|-|+.+--. .....|.+.+..+.. ...|+.. ..+++++++++..
T Consensus 3 ~~i~~~~~~e~~~-~~~~~~--~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~---~~~~~~~~~~~~~----- 67 (102)
T cd03066 3 EIINSERELQAFE-NIEDDI--KLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFAT---FDSKVAKKLGLKM----- 67 (102)
T ss_pred eEcCCHHHHHHHh-cccCCe--EEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEE---CcHHHHHHcCCCC-----
Confidence 345 345588888 5 4333 56666665333 345567888887764 6778543 3557788887754
Q ss_pred CCCEEEEEeC
Q 025628 198 QLPTYILFEN 207 (250)
Q Consensus 198 ~lPTlilf~~ 207 (250)
|+++++++
T Consensus 68 --~~i~l~~~ 75 (102)
T cd03066 68 --NEVDFYEP 75 (102)
T ss_pred --CcEEEeCC
Confidence 88888876
No 223
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=82.50 E-value=4.1 Score=27.37 Aligned_cols=51 Identities=24% Similarity=0.267 Sum_probs=30.7
Q ss_pred EEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC----ChhHHHHhCCccCCCCCCCCEEEE
Q 025628 143 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL----FPNAAEKFGISLGGSMGQLPTYIL 204 (250)
Q Consensus 143 ~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~----~~~la~k~~I~~~~~~~~lPTlil 204 (250)
.|+.++|+.|++..-.+.+.... .+...+|..+ .++..+... .+++|++..
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~-----~~~~~v~~~~~~~~~~~~~~~~p------~~~vP~l~~ 57 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGID-----VPLVTVDLAAGEQRSPEFLAKNP------AGTVPVLEL 57 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCC-----ceEEEeecccCccCCHHHHhhCC------CCCCCEEEe
Confidence 46778999999998887666443 3445555432 222232222 235998864
No 224
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=82.29 E-value=6.6 Score=27.22 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=30.6
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHh-CCccCCCCCCCCEEEE
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKF-GISLGGSMGQLPTYIL 204 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~-~I~~~~~~~~lPTlil 204 (250)
..++.++||.|++..-.+++. ++.+-.+|++........+ .++. .+++|+++.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~-------gi~y~~~~v~~~~~~~~~~~~~~p---~~~vP~l~~ 56 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL-------ELDVILYPCPKGSPKRDKFLEKGG---KVQVPYLVD 56 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc-------CCcEEEEECCCChHHHHHHHHhCC---CCcccEEEe
Confidence 346678999999987766554 3444446665443222223 2221 246998753
No 225
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=82.28 E-value=1.8 Score=37.52 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=44.1
Q ss_pred ccccCChhh---HHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC
Q 025628 118 ISNKLTPLQ---LEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 179 (250)
Q Consensus 118 ~v~~l~~~~---l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~ 179 (250)
.+..+++++ +-+.. +++++ .+++|.+-.||+-+.-.+.|+++.++|++ ...|..|-+.
T Consensus 83 ~vv~l~g~~~~~ildf~-~g~RP--LVlnFGS~TCPpF~~~l~~f~~l~~~f~d-~adFl~VYI~ 143 (237)
T PF00837_consen 83 PVVTLDGQRSCRILDFA-KGNRP--LVLNFGSCTCPPFMAKLDAFKRLVEDFSD-VADFLIVYIE 143 (237)
T ss_pred ceEeeCCCcceeHHHhc-cCCCC--eEEEcccccchHHHHHHHHHHHHHHHhhh-hhheehhhHh
Confidence 466666655 43444 55666 99999999999999999999999999985 5567666553
No 226
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=81.82 E-value=2.9 Score=32.74 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=26.2
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChh
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN 183 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~ 183 (250)
+..|+.++|+.|++....+++- ++.|-.+|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-------gi~~~~idi~~~~~ 37 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-------DIPFTERNIFSSPL 37 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCcEEeeccCChh
Confidence 3468899999999987666432 56677788776553
No 227
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.75 E-value=2.3 Score=30.25 Aligned_cols=57 Identities=14% Similarity=0.278 Sum_probs=37.0
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh----------------hHHHHhCCccCCCCCCCCEEEEE
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP----------------NAAEKFGISLGGSMGQLPTYILF 205 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~----------------~la~k~~I~~~~~~~~lPTlilf 205 (250)
+.|+|.-||.|......++++...| -.||++..- +-++.+|--+ +|.+..
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y-------d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiG------IPall~- 70 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY-------DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIG------IPALLT- 70 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc-------eeeehhhhhhhHHHHHhhhccchhHHhhhhcCccc------ceEEEe-
Confidence 5699999999999888887765544 345554321 2344555556 898754
Q ss_pred eCCeEEE
Q 025628 206 ENNAEIN 212 (250)
Q Consensus 206 ~~G~e~~ 212 (250)
++|+.+.
T Consensus 71 ~d~~vVl 77 (85)
T COG4545 71 DDGKVVL 77 (85)
T ss_pred CCCcEEE
Confidence 5665543
No 228
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=81.14 E-value=3.7 Score=26.61 Aligned_cols=51 Identities=18% Similarity=0.140 Sum_probs=29.9
Q ss_pred EEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhH--HHHhCCccCCCCCCCCEEEE
Q 025628 143 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNA--AEKFGISLGGSMGQLPTYIL 204 (250)
Q Consensus 143 ~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~l--a~k~~I~~~~~~~~lPTlil 204 (250)
.|+.++|+.|++..-.++..... ++...++.+..... .+..+ .+++|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~-----~~~~~~~~~~~~~~~~~~~~~------~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP-----YELVPVDLGEGEQEEFLALNP------LGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC-----cEEEEeCCCCCCCHHHHhcCC------CCCCCEEEE
Confidence 46788999999988887666443 34444554433322 22222 345997653
No 229
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=80.55 E-value=9.3 Score=26.26 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=34.7
Q ss_pred EecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC-hhHHHHhCCccCCCCCCCCEEEEEeCCeEE
Q 025628 144 FRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-PNAAEKFGISLGGSMGQLPTYILFENNAEI 211 (250)
Q Consensus 144 FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~-~~la~k~~I~~~~~~~~lPTlilf~~G~e~ 211 (250)
++.++|+.|++..=.++.... .+++..++..+. +...+...-.. +|++. .+|..+
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i-----~~~~~~v~~~~~~~~~~~~~p~~~------vPvL~--~~g~~l 57 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI-----PYELVPVDPEEKRPEFLKLNPKGK------VPVLV--DDGEVL 57 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE-----EEEEEEEBTTSTSHHHHHHSTTSB------SSEEE--ETTEEE
T ss_pred CCcCCChHHHHHHHHHHHcCC-----eEEEeccCcccchhHHHhhccccc------ceEEE--ECCEEE
Confidence 678999999998776655544 345556665553 33444444444 99886 556533
No 230
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=79.43 E-value=1.5 Score=36.87 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=64.5
Q ss_pred ceEEEEEe-cCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh-------hHHHHhCCccCCCCCCCCEEEEEeCCe
Q 025628 138 RYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-------NAAEKFGISLGGSMGQLPTYILFENNA 209 (250)
Q Consensus 138 ~~vlV~Fy-A~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~-------~la~k~~I~~~~~~~~lPTlilf~~G~ 209 (250)
+++++.|| ++..+-|-.+-..|++...+++..+.+++.+.+|..- ...++.|+.. +|.-++=+..+
T Consensus 34 kw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~------i~~PmiaD~~~ 107 (194)
T COG0450 34 KWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGK------IKFPMIADPKG 107 (194)
T ss_pred cEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccc------eecceEEcCch
Confidence 44555566 7888999999999999999998889999999988432 1233455544 66657667666
Q ss_pred EEEeeeCCcC-CCcc---ccccccHHHHhhhccc
Q 025628 210 EINRFPAFGF-EEKF---SHPHITKKLIAHHFQL 239 (250)
Q Consensus 210 e~~r~~g~~~-~g~i---~~~~~~~~~i~~~f~l 239 (250)
++.|.-|+.. ++.+ ..|+++.++++++.--
T Consensus 108 ~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v 141 (194)
T COG0450 108 EIARAYGVLHPEEGLALRGTFIIDPDGVIRHILV 141 (194)
T ss_pred hHHHHcCCcccCCCcceeEEEEECCCCeEEEEEE
Confidence 7777666643 2221 2356666666666543
No 231
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=79.23 E-value=9.1 Score=25.85 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=30.2
Q ss_pred EEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC----hhHHHHhCCccCCCCCCCCEEE
Q 025628 143 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF----PNAAEKFGISLGGSMGQLPTYI 203 (250)
Q Consensus 143 ~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~----~~la~k~~I~~~~~~~~lPTli 203 (250)
.|+.++|+.|++..-.+++... .+....+|..+. ++..+.... +++|++.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi-----~~e~~~i~~~~~~~~~~~~~~~~p~------~~vP~l~ 56 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKALGL-----ELNLKEVNLMKGEHLKPEFLKLNPQ------HTVPTLV 56 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHcCC-----CCEEEEecCccCCcCCHHHHhhCcC------CCCCEEE
Confidence 5788999999988777766544 344455665332 233332222 2499885
No 232
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=78.53 E-value=3.3 Score=31.14 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=25.6
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 182 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~ 182 (250)
..|+.++|+.|++....+++- ++.|-.+|+.+.|
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-------~i~~~~~di~~~p 35 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-------GVAYTFHDYRKDG 35 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------CCCeEEEecccCC
Confidence 458899999999987776443 6667777877655
No 233
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=78.23 E-value=6.2 Score=29.96 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=25.7
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 182 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~ 182 (250)
..|+.++|+.|++....+++- ++.+-.+|+.+++
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~~-------gi~~~~idi~~~~ 36 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEEH-------QIPFEERNLFKQP 36 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-------CCceEEEecCCCc
Confidence 357889999999988777652 5677778886654
No 234
>PHA03075 glutaredoxin-like protein; Provisional
Probab=77.82 E-value=4.1 Score=31.41 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=26.1
Q ss_pred EEEEEecCCChhhHHHhhhHHHHHHHcC
Q 025628 140 WLVEFRAQCSSTCIRASRIFPELSIAYS 167 (250)
Q Consensus 140 vlV~FyA~WC~~C~~~~p~~~~l~~~y~ 167 (250)
+++.|.-|-|+-|+.....++++.++|.
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 7999999999999999999999999884
No 235
>PRK12559 transcriptional regulator Spx; Provisional
Probab=74.06 E-value=6.2 Score=30.93 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=25.0
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 182 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~ 182 (250)
+..|+.++|+.|++....+++- ++.+-.+|+.+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-------QIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCeEEEEeeCCc
Confidence 3468899999999987666442 5666677776544
No 236
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=73.95 E-value=19 Score=31.53 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=25.1
Q ss_pred CCceEEEEEecCCChhhHHHhhhHHHHHHHcCC
Q 025628 136 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN 168 (250)
Q Consensus 136 k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~ 168 (250)
++|+.++...+.|||.|-..+=.+-..-.+|+.
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 345599999999999999988666555555763
No 237
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=73.76 E-value=6.8 Score=26.88 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=17.2
Q ss_pred EEEecCCChhhHHHhhhHHHHHH
Q 025628 142 VEFRAQCSSTCIRASRIFPELSI 164 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~ 164 (250)
..|+.+.||.|++.+-.+.+...
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~gi 25 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYHGI 25 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHCCC
Confidence 45778999999999866655433
No 238
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=71.41 E-value=13 Score=30.34 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=31.9
Q ss_pred CCceEEEEEecCCC-hhhHHHhhhHHHHHHHcCC--CCcEEEEEECC
Q 025628 136 TSRYWLVEFRAQCS-STCIRASRIFPELSIAYSN--KNVSFGIVDLG 179 (250)
Q Consensus 136 k~~~vlV~FyA~WC-~~C~~~~p~~~~l~~~y~~--~~v~f~~VDv~ 179 (250)
++++++|.|.=+.| ..|-.....++++.++... .+++++-|.+|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 55669999988788 6788887777777665542 47888888777
No 239
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=69.84 E-value=22 Score=34.13 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=53.1
Q ss_pred hHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEE
Q 025628 126 QLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILF 205 (250)
Q Consensus 126 ~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf 205 (250)
++.+.+ ++-+.. +-+.++.+-|+.|.++...+++++..- +++++-..+.+ .. .|++.+.
T Consensus 9 ~l~~~~-~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~s--~~i~~~~~~~~-----------~~------~p~~~~~ 67 (517)
T PRK15317 9 QLKQYL-ELLERP-IELVASLDDSEKSAELKELLEEIASLS--DKITVEEDSLD-----------VR------KPSFSIT 67 (517)
T ss_pred HHHHHH-HhCCCC-EEEEEEeCCCchHHHHHHHHHHHHHhC--CceEEEEccCC-----------CC------CCEEEEE
Confidence 455666 332332 556666668999999999999998854 26665432211 23 7999888
Q ss_pred eCCeEE-EeeeCCcCCCccccccc
Q 025628 206 ENNAEI-NRFPAFGFEEKFSHPHI 228 (250)
Q Consensus 206 ~~G~e~-~r~~g~~~~g~i~~~~~ 228 (250)
++|+.. .|+.|...-.++..|+.
T Consensus 68 ~~~~~~~i~f~g~P~g~Ef~s~i~ 91 (517)
T PRK15317 68 RPGEDTGVRFAGIPMGHEFTSLVL 91 (517)
T ss_pred cCCccceEEEEecCccHHHHHHHH
Confidence 877654 58888865555555543
No 240
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=66.90 E-value=13 Score=29.61 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=44.7
Q ss_pred EEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEE
Q 025628 140 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEIN 212 (250)
Q Consensus 140 vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~ 212 (250)
-++.++.|.|+-|......++ .+++++-.++.+....+-+++||..+-.| -=|.++ +|+-+.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk-------~~Gf~Vk~~~~~d~~alK~~~gIp~e~~S--CHT~VI--~Gy~vE 88 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK-------ANGFEVKVVETDDFLALKRRLGIPYEMQS--CHTAVI--NGYYVE 88 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH-------hCCcEEEEeecCcHHHHHHhcCCChhhcc--ccEEEE--cCEEEe
Confidence 467799999999998876664 23788888998888889999998653333 335443 455443
No 241
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=65.83 E-value=9.8 Score=29.86 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=24.5
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 182 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~ 182 (250)
..|+.++|+.|++....+++ .++.|-.+|+.+.+
T Consensus 3 ~iY~~~~C~~crkA~~~L~~-------~~i~~~~~d~~~~~ 36 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWLNA-------HQLSYKEQNLGKEP 36 (132)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEECCCCC
Confidence 45788999999998765543 26677778876554
No 242
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=65.26 E-value=28 Score=25.68 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=45.1
Q ss_pred ccC-ChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCC
Q 025628 120 NKL-TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQ 198 (250)
Q Consensus 120 ~~l-~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~ 198 (250)
+.+ +.+++++.+ ..++. .+|-|+.+--. .....|.+.+..+.. +..|+... .+++++++++ .
T Consensus 3 ~~i~s~~~l~~f~-~~~~~--~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~~~~~~~~~~-~------ 65 (104)
T cd03069 3 VELRTEAEFEKFL-SDDDA--SVVGFFEDEDS---KLLSEFLKAADTLRE-SFRFAHTS---DKQLLEKYGY-G------ 65 (104)
T ss_pred cccCCHHHHHHHh-ccCCc--EEEEEEcCCCc---hHHHHHHHHHHhhhh-cCEEEEEC---hHHHHHhcCC-C------
Confidence 344 335577777 54444 67777765443 355677788887754 67886544 4577888887 6
Q ss_pred CCEEEEEeC
Q 025628 199 LPTYILFEN 207 (250)
Q Consensus 199 lPTlilf~~ 207 (250)
|++++|+.
T Consensus 66 -~~ivl~~p 73 (104)
T cd03069 66 -EGVVLFRP 73 (104)
T ss_pred -CceEEEec
Confidence 67778743
No 243
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=65.10 E-value=13 Score=30.48 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=25.8
Q ss_pred EEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEEC
Q 025628 143 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDL 178 (250)
Q Consensus 143 ~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv 178 (250)
.|.-|.|+.|-..+|.+.++..+|+. .+.+-.+=.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~-~i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN-KIEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T-TEEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC-cEEEEEEEc
Confidence 48899999999999999999999986 565554433
No 244
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=63.85 E-value=24 Score=25.11 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=30.9
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChh-HHHHhCCccCCCCCCCCEEEE
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN-AAEKFGISLGGSMGQLPTYIL 204 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~-la~k~~I~~~~~~~~lPTlil 204 (250)
+..|+.+.|+.|++..-.+++... .++...+|....++ ..+.... +++|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl-----~~~~~~v~~~~~~~~~~~~np~------~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI-----PHEVININLKDKPDWFLEKNPQ------GKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC-----CCeEEEeCCCCCcHHHHhhCCC------CCcCEEEE
Confidence 455678889999988766655433 34455566544332 3322222 34997763
No 245
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=63.67 E-value=37 Score=32.68 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=52.5
Q ss_pred hhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEE
Q 025628 125 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYIL 204 (250)
Q Consensus 125 ~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlil 204 (250)
+++.+.+ ++-+.. +-+.++.+-|+.|.++...++++++.- +++++...|.+. .. .|++.+
T Consensus 8 ~~l~~~~-~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~s--~ki~~~~~~~~~----------~~------~p~~~~ 67 (515)
T TIGR03140 8 AQLKSYL-ASLENP-VTLVLSAGSHEKSKELLELLDEIASLS--DKISLTQNTADT----------LR------KPSFTI 67 (515)
T ss_pred HHHHHHH-HhcCCC-EEEEEEeCCCchhHHHHHHHHHHHHhC--CCeEEEEecCCc----------CC------CCeEEE
Confidence 3466666 433332 545555557999999999999888753 366664433221 23 799988
Q ss_pred EeCCeEE-EeeeCCcCCCcccccc
Q 025628 205 FENNAEI-NRFPAFGFEEKFSHPH 227 (250)
Q Consensus 205 f~~G~e~-~r~~g~~~~g~i~~~~ 227 (250)
.++|+.. .|+.|...-.++..|.
T Consensus 68 ~~~~~~~~i~f~g~P~g~Ef~s~i 91 (515)
T TIGR03140 68 LRDGADTGIRFAGIPGGHEFTSLV 91 (515)
T ss_pred ecCCcccceEEEecCCcHHHHHHH
Confidence 8777643 6888885544454444
No 246
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=63.54 E-value=35 Score=23.36 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=31.7
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhH-HHHhCCccCCCCCCCCEEEEEeCCe
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNA-AEKFGISLGGSMGQLPTYILFENNA 209 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~l-a~k~~I~~~~~~~~lPTlilf~~G~ 209 (250)
..|+.+.|+.|++..-.+.+... .+....+|....... .+-..++. .+++|++. ++|.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl-----~~e~~~v~~~~~~~~~~~~~~inP---~g~vP~L~--~~g~ 60 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL-----RCEEYDVSLPLSEHNEPWFMRLNP---TGEVPVLI--HGDN 60 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC-----CCEEEEecCCcCccCCHHHHHhCc---CCCCCEEE--ECCE
Confidence 35778889999888755544433 455666766432111 11112222 23599885 4664
No 247
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=59.53 E-value=1.1e+02 Score=25.85 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=37.0
Q ss_pred CCCceEEEEEecCCC-hhhHHHhhhHHHHHHHcC---CCCcEEEEEECC--C-ChhHHHHhCC
Q 025628 135 KTSRYWLVEFRAQCS-STCIRASRIFPELSIAYS---NKNVSFGIVDLG--L-FPNAAEKFGI 190 (250)
Q Consensus 135 ~k~~~vlV~FyA~WC-~~C~~~~p~~~~l~~~y~---~~~v~f~~VDv~--~-~~~la~k~~I 190 (250)
-++++++|.|.=+.| .-|-.+...+.++.++.. ..+++++-|.+| + .|+..++|..
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 366779999976666 469988888888877776 234555544444 3 2455666665
No 248
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=59.08 E-value=49 Score=21.83 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=20.8
Q ss_pred EEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEEC
Q 025628 143 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDL 178 (250)
Q Consensus 143 ~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv 178 (250)
.|+.+.|+.|++..-.+++... ..+...+|.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~-----~~~~~~i~~ 33 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGI-----PYEWVEVDI 33 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCC-----CcEEEEecC
Confidence 4778899999988777665543 334455554
No 249
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=56.66 E-value=54 Score=23.98 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=36.2
Q ss_pred EecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCC--CCCCCCEEEEEeCCeEE
Q 025628 144 FRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGG--SMGQLPTYILFENNAEI 211 (250)
Q Consensus 144 FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~--~~~~lPTlilf~~G~e~ 211 (250)
.|.+.+.-.++....=+++..-+...++.|-.+|++.+++..+...-..+. ..+.+|- +|-+|+-+
T Consensus 4 vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQ--IFi~~~~i 71 (92)
T cd03030 4 VYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQ--IFNGDEYC 71 (92)
T ss_pred EEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCE--EEECCEEe
Confidence 344444445555554444444445558999999999887765544322111 1233674 44566544
No 250
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=54.28 E-value=23 Score=24.78 Aligned_cols=50 Identities=8% Similarity=0.045 Sum_probs=28.3
Q ss_pred cCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEE
Q 025628 146 AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 203 (250)
Q Consensus 146 A~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTli 203 (250)
-+||+.|++..-.+...... .+...+|..+.+.....++++. .+++|+++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~-----~~~~~~~~~~~~~~~~~~~~~p---~~~vP~L~ 62 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE-----YKTVPVEFPDIPPILGELTSGG---FYTVPVIV 62 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC-----CeEEEecCCCcccccccccCCC---CceeCeEE
Confidence 36899999988777665443 3444556544333222222322 34689875
No 251
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=50.84 E-value=28 Score=26.48 Aligned_cols=26 Identities=12% Similarity=0.475 Sum_probs=22.2
Q ss_pred EECCCChhHHHHhCCccCCCCCCCCEEEEEeC
Q 025628 176 VDLGLFPNAAEKFGISLGGSMGQLPTYILFEN 207 (250)
Q Consensus 176 VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~ 207 (250)
.++.-+|.+-++|+|+. +||+++-++
T Consensus 55 ~~v~IdP~~F~~y~I~~------VPa~V~~~~ 80 (113)
T PF09673_consen 55 PGVQIDPRLFRQYNITA------VPAFVVVKD 80 (113)
T ss_pred cceeEChhHHhhCCceE------cCEEEEEcC
Confidence 44455799999999999 999999877
No 252
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=50.47 E-value=13 Score=30.47 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=16.0
Q ss_pred ChhHHHHhCCccCCCCCCCCEEEEEe
Q 025628 181 FPNAAEKFGISLGGSMGQLPTYILFE 206 (250)
Q Consensus 181 ~~~la~k~~I~~~~~~~~lPTlilf~ 206 (250)
+..++++.+|.+ .||+++++
T Consensus 136 D~~la~~m~I~~------~Ptlvi~~ 155 (176)
T PF13743_consen 136 DQQLAREMGITG------FPTLVIFN 155 (176)
T ss_dssp HHHHHHHTT-SS------SSEEEEE-
T ss_pred HHHHHHHcCCCC------CCEEEEEe
Confidence 456899999999 99999998
No 253
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=47.75 E-value=1.1e+02 Score=23.38 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=53.9
Q ss_pred ccCChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCC-CCcEEEEEECCCChhHH----HHhCCcc
Q 025628 120 NKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN-KNVSFGIVDLGLFPNAA----EKFGISL 192 (250)
Q Consensus 120 ~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~-~~v~f~~VDv~~~~~la----~k~~I~~ 192 (250)
.++++++.-+.= +.+-...-++-|--+-.+.-.++.+.+++++++++. +++.++-||-+..|-+. +.|+|+-
T Consensus 4 rkl~~~~m~e~w-edd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl 80 (120)
T cd03074 4 RKLKPENMFETW-EDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDL 80 (120)
T ss_pred hhccHHHHHHhh-hcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCccc
Confidence 455666543333 232233467888888999999999999999999875 68999999999999765 4667765
No 254
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=46.25 E-value=88 Score=29.67 Aligned_cols=88 Identities=9% Similarity=0.087 Sum_probs=57.5
Q ss_pred HHHHhcCCCCceEEEEEecCCChhhHHHhh-hH-HHHHHHcCCCCcEEEEEECCC--ChhHHHHhCCccCCCCCCCCEEE
Q 025628 128 EALLTEGKTSRYWLVEFRAQCSSTCIRASR-IF-PELSIAYSNKNVSFGIVDLGL--FPNAAEKFGISLGGSMGQLPTYI 203 (250)
Q Consensus 128 ~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p-~~-~~l~~~y~~~~v~f~~VDv~~--~~~la~k~~I~~~~~~~~lPTli 203 (250)
-+.+....+.+.++|-|-+.-.....++.. .| ++...+...+.+.-++|+.+. ..+.+.-|.+.. +|++.
T Consensus 9 peAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~------vPs~f 82 (506)
T KOG2507|consen 9 PEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVS------VPSIF 82 (506)
T ss_pred HHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhccccc------cccee
Confidence 334423333344888888888888888873 23 333223333356666777653 345677888888 99988
Q ss_pred EE-eCCeEEEeeeCCcCCC
Q 025628 204 LF-ENNAEINRFPAFGFEE 221 (250)
Q Consensus 204 lf-~~G~e~~r~~g~~~~g 221 (250)
++ +.|..+.+..|+...+
T Consensus 83 fIg~sGtpLevitg~v~ad 101 (506)
T KOG2507|consen 83 FIGFSGTPLEVITGFVTAD 101 (506)
T ss_pred eecCCCceeEEeeccccHH
Confidence 87 5899999999985533
No 255
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=44.70 E-value=43 Score=28.43 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=27.1
Q ss_pred ceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEE
Q 025628 138 RYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSF 173 (250)
Q Consensus 138 ~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f 173 (250)
...++.|.-.-||+|++..|.+.+........++.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~ 120 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVL 120 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEE
Confidence 458999999999999888888887666655433333
No 256
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=43.19 E-value=37 Score=29.48 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=37.3
Q ss_pred CCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCC---CCcEEEEEECCC
Q 025628 134 GKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN---KNVSFGIVDLGL 180 (250)
Q Consensus 134 ~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~---~~v~f~~VDv~~ 180 (250)
...++.++|-+-..+|..|..-+..+++|..++.. .+++|+.||--.
T Consensus 23 ~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 23 NSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred hcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 44556688888888999999999999998876643 478999999653
No 257
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=42.68 E-value=77 Score=23.16 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=30.2
Q ss_pred CCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCe
Q 025628 147 QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNA 209 (250)
Q Consensus 147 ~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~ 209 (250)
.+|+.|++..=.+++... ..+...+|....|+.-.+.+=. +++|+++ ++|.
T Consensus 20 g~cpf~~rvrl~L~eKgi-----~ye~~~vd~~~~p~~~~~~nP~-----g~vPvL~--~~~~ 70 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGV-----VFNVTTVDMKRKPEDLKDLAPG-----TQPPFLL--YNGE 70 (91)
T ss_pred CCChhHHHHHHHHHHCCC-----ceEEEEeCCCCCCHHHHHhCCC-----CCCCEEE--ECCE
Confidence 579999998777755432 3445666766666544333221 3599654 4553
No 258
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=42.38 E-value=97 Score=25.60 Aligned_cols=61 Identities=11% Similarity=0.209 Sum_probs=34.9
Q ss_pred EEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCeEEE
Q 025628 140 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEIN 212 (250)
Q Consensus 140 vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~ 212 (250)
.+-.|+.++|+.|++..=.+++... .+....+|.+..++--.+ ++. .+++|++. ++|..+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl-----~~e~~~v~~~~~~~~~~~--~nP---~g~VPvL~--~~g~~l~ 70 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGV-----SVEIEQVEKDNLPQDLID--LNP---YQSVPTLV--DRELTLY 70 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCC-----CCEEEeCCcccCCHHHHH--hCC---CCCCCEEE--ECCEEee
Confidence 3445566789999998866665433 345566666544322222 222 24699885 5665443
No 259
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=41.62 E-value=1.1e+02 Score=20.51 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=20.0
Q ss_pred EEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC
Q 025628 143 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 179 (250)
Q Consensus 143 ~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~ 179 (250)
.|+.+.|+.|++..-.+++.... ++...+|..
T Consensus 4 Ly~~~~s~~s~~v~~~l~~~~i~-----~~~~~~~~~ 35 (76)
T cd03053 4 LYGAAMSTCVRRVLLCLEEKGVD-----YELVPVDLT 35 (76)
T ss_pred EEeCCCChhHHHHHHHHHHcCCC-----cEEEEeCcc
Confidence 34566699999987777665443 344455543
No 260
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=39.30 E-value=34 Score=26.87 Aligned_cols=27 Identities=15% Similarity=0.475 Sum_probs=22.8
Q ss_pred ECCCChhHHHHhCCccCCCCCCCCEEEEEeCCe
Q 025628 177 DLGLFPNAAEKFGISLGGSMGQLPTYILFENNA 209 (250)
Q Consensus 177 Dv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~ 209 (250)
.+.=+|.+-++|+|+. +|++++.+++.
T Consensus 56 ~v~IdP~lF~~f~I~~------VPa~V~~~~~~ 82 (130)
T TIGR02742 56 GVQIDPQWFKQFDITA------VPAFVVVKDGL 82 (130)
T ss_pred cEEEChHHHhhcCceE------cCEEEEECCCC
Confidence 3344699999999999 99999998774
No 261
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=39.10 E-value=1.6e+02 Score=21.85 Aligned_cols=72 Identities=11% Similarity=0.159 Sum_probs=44.4
Q ss_pred ccC-ChhhHHHHHhcCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCC
Q 025628 120 NKL-TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQ 198 (250)
Q Consensus 120 ~~l-~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~ 198 (250)
+.+ +.+++++.+ ..++. ..+|-|+.+--+ .....|.+.++.+.+ +..|+... .+++.+++++..
T Consensus 3 ~~i~s~~ele~f~-~~~~~-~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-d~~F~~t~---~~~~~~~~~~~~------ 67 (107)
T cd03068 3 KQLQTLKQVQEFL-RDGDD-VIIIGVFSGEED---PAYQLYQDAANSLRE-DYKFHHTF---DSEIFKSLKVSP------ 67 (107)
T ss_pred eEcCCHHHHHHHH-hcCCC-EEEEEEECCCCC---HHHHHHHHHHHhccc-CCEEEEEC---hHHHHHhcCCCC------
Confidence 344 335577777 44312 256666665333 355667888888765 67885443 457788888765
Q ss_pred CCEEEEEeC
Q 025628 199 LPTYILFEN 207 (250)
Q Consensus 199 lPTlilf~~ 207 (250)
|.+++|+.
T Consensus 68 -~~vvl~rp 75 (107)
T cd03068 68 -GQLVVFQP 75 (107)
T ss_pred -CceEEECc
Confidence 66777744
No 262
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=38.25 E-value=1.2e+02 Score=20.16 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=13.5
Q ss_pred cCCChhhHHHhhhHHHH
Q 025628 146 AQCSSTCIRASRIFPEL 162 (250)
Q Consensus 146 A~WC~~C~~~~p~~~~l 162 (250)
.++|+.|++..-.++..
T Consensus 13 ~s~sp~~~~v~~~L~~~ 29 (72)
T cd03054 13 PSLSPECLKVETYLRMA 29 (72)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 46999999998777653
No 263
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=37.76 E-value=20 Score=29.72 Aligned_cols=91 Identities=14% Similarity=0.016 Sum_probs=50.7
Q ss_pred eEEEEEe-cCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC---ChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEee
Q 025628 139 YWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL---FPNAAEKFGISLGGSMGQLPTYILFENNAEINRF 214 (250)
Q Consensus 139 ~vlV~Fy-A~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~---~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~ 214 (250)
++++.|| +..-|-|.+..=-|.+-.++++..+..++.+..|. .+..+.+++ +|.-++-+.++|+...
T Consensus 92 ~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqn---------lPYhLLSDpk~e~ik~ 162 (211)
T KOG0855|consen 92 PVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQN---------LPYHLLSDPKNEVIKD 162 (211)
T ss_pred cEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhcc---------CCeeeecCcchhHHHH
Confidence 4777777 55667788766556555555554455666655442 333444443 6777777766666555
Q ss_pred eCCc--CCCc---cccccccHHHHhhhcc
Q 025628 215 PAFG--FEEK---FSHPHITKKLIAHHFQ 238 (250)
Q Consensus 215 ~g~~--~~g~---i~~~~~~~~~i~~~f~ 238 (250)
-|.. +-|. -.+|+|.+..++..+.
T Consensus 163 lGa~k~p~gg~~~Rsh~if~kg~~k~~ik 191 (211)
T KOG0855|consen 163 LGAPKDPFGGLPGRSHYIFDKGGVKQLIK 191 (211)
T ss_pred hCCCCCCCCCcccceEEEEecCCeEEEEE
Confidence 5542 2222 2355565555544443
No 264
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=37.17 E-value=75 Score=23.47 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=34.9
Q ss_pred EecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEE-EeCCe
Q 025628 144 FRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYIL-FENNA 209 (250)
Q Consensus 144 FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlil-f~~G~ 209 (250)
||=.+||-|......+.+... ...+.|.-+.-....++.+.++++. .+..+.+. .++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~---~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR---GGRLRFVDIQSEPDQALLASYGISP----EDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC---CCCEEEEECCChhhhhHHHhcCcCH----HHHcCeeEEecCCC
Confidence 688899999999988877732 1245554332223333456777753 22444444 46776
No 265
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=37.04 E-value=43 Score=26.93 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=22.4
Q ss_pred ChhHHHHhCCccCCCCCCCCEEEEEeCCeEEEeeeCCcC
Q 025628 181 FPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGF 219 (250)
Q Consensus 181 ~~~la~k~~I~~~~~~~~lPTlilf~~G~e~~r~~g~~~ 219 (250)
+.+.+.++||.+ +||+++ +|+ ..+.|.++
T Consensus 156 ~~~~a~~~gv~G------vP~~vv--~g~--~~~~G~~~ 184 (193)
T PF01323_consen 156 DTAEARQLGVFG------VPTFVV--NGK--YRFFGADR 184 (193)
T ss_dssp HHHHHHHTTCSS------SSEEEE--TTT--EEEESCSS
T ss_pred HHHHHHHcCCcc------cCEEEE--CCE--EEEECCCC
Confidence 456788999999 999999 666 56666654
No 266
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=35.92 E-value=53 Score=27.42 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=33.9
Q ss_pred cCCCCceEEEEEe-cCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC
Q 025628 133 EGKTSRYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 179 (250)
Q Consensus 133 ~~~k~~~vlV~Fy-A~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~ 179 (250)
..-+++++++-|| .++---|-.+--.|++.+.+++.-|-.++.+.+|
T Consensus 29 ~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D 76 (196)
T KOG0852|consen 29 SDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD 76 (196)
T ss_pred hhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc
Confidence 4456677888888 6777777666666788777777667777777766
No 267
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=35.64 E-value=65 Score=24.44 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=24.1
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 182 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~ 182 (250)
.-|+.+.|+.|++....+++- ++.|-.+|+-+.|
T Consensus 3 ~iy~~p~C~~crkA~~~L~~~-------gi~~~~~d~~~~p 36 (113)
T cd03033 3 IFYEKPGCANNARQKALLEAA-------GHEVEVRDLLTEP 36 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCCcEEeehhcCC
Confidence 458899999999987666432 5666667776544
No 268
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=34.72 E-value=2.6e+02 Score=24.73 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025628 45 REIQAVLALSLLAAIKITREETWEEFIDNMLFYAKLLL 82 (250)
Q Consensus 45 ~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~ 82 (250)
|-.+.+++++++..++.-.-+...++++..-.|.-+..
T Consensus 115 ~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~ 152 (268)
T COG4587 115 RASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLA 152 (268)
T ss_pred HHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHH
Confidence 44455678888888887777767777776666554433
No 269
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=33.86 E-value=42 Score=28.04 Aligned_cols=70 Identities=19% Similarity=0.333 Sum_probs=48.5
Q ss_pred EEEEEe--cCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh------hHHHHhCCccCCCCCCCCEEEEEeCCeEE
Q 025628 140 WLVEFR--AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP------NAAEKFGISLGGSMGQLPTYILFENNAEI 211 (250)
Q Consensus 140 vlV~Fy--A~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~------~la~k~~I~~~~~~~~lPTlilf~~G~e~ 211 (250)
|-|.|. |+.-|-|..+..-+++++-++...+++.+...++.-. .--+.|+-..+. + +|.-|+-+..+++
T Consensus 34 W~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~Wi~DIks~~~~~~~-~--~~yPIIaD~~rel 110 (224)
T KOG0854|consen 34 WGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKDWIKDIKSYAKVKNH-S--VPYPIIADPNREL 110 (224)
T ss_pred eEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHHHHHHHHHHHhccCC-C--CCCCeecCCchhh
Confidence 888886 7889999999999999999998889999999887422 222333322211 2 5555665655555
Q ss_pred E
Q 025628 212 N 212 (250)
Q Consensus 212 ~ 212 (250)
.
T Consensus 111 a 111 (224)
T KOG0854|consen 111 A 111 (224)
T ss_pred h
Confidence 4
No 270
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=31.29 E-value=1.1e+02 Score=20.28 Aligned_cols=19 Identities=11% Similarity=-0.066 Sum_probs=13.9
Q ss_pred EEecCCChhhHHHhhhHHH
Q 025628 143 EFRAQCSSTCIRASRIFPE 161 (250)
Q Consensus 143 ~FyA~WC~~C~~~~p~~~~ 161 (250)
.|+.+.|+.|.+..-.++.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~ 21 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHE 21 (73)
T ss_pred EecCCCCcHHHHHHHHHHH
Confidence 3567889999987666554
No 271
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=30.97 E-value=2.5e+02 Score=23.12 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=32.0
Q ss_pred CCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC
Q 025628 135 KTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 179 (250)
Q Consensus 135 ~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~ 179 (250)
-+++.+||.==|+-|+--..--..+.++.++|+..++.+...=|.
T Consensus 32 yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCN 76 (171)
T KOG1651|consen 32 YRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCN 76 (171)
T ss_pred hCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccc
Confidence 355558887788888877766667888888887666666665543
No 272
>PF14851 FAM176: FAM176 family
Probab=30.95 E-value=1.5e+02 Score=23.99 Aligned_cols=40 Identities=28% Similarity=0.320 Sum_probs=27.1
Q ss_pred HHHHHHHH-HHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHh
Q 025628 69 EFIDNMLF-YAKLLL----VAIASIMDYHLALWFLVVFLVIYILT 108 (250)
Q Consensus 69 ~~l~~~~~-~~k~~~----~~~~~~~~~~~~~~y~i~~~v~~~~~ 108 (250)
.++++++. |+.+-. ++|+|.++.-.|+++.+..+++-+.+
T Consensus 3 ~llSnsLaaya~I~~~PE~~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 3 ELLSNSLAAYAHIRDNPERFALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 34555554 555552 46777888888888877777777777
No 273
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=30.77 E-value=65 Score=25.98 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=24.3
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcC
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYS 167 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~ 167 (250)
+..|+-+.||.|-...+.+.++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 557888999999999999999999984
No 274
>PHA02726 hypothetical protein; Provisional
Probab=30.56 E-value=98 Score=22.62 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 025628 13 YLSHFMAFFSYFVVRSSA 30 (250)
Q Consensus 13 y~~n~~~~~~y~~~r~~~ 30 (250)
|++|-++.++|++++...
T Consensus 4 yiInpilsifYfiig~vs 21 (94)
T PHA02726 4 YIINPILNIFYFMIRKIS 21 (94)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 899999999999999887
No 275
>PF01773 Nucleos_tra2_N: Na+ dependent nucleoside transporter N-terminus; InterPro: IPR002668 This entry contains nucleoside transport proteins. S282_RAT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. S281_RAT is a a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine it also transports the anti-viral nucleoside analogues AZT and ddC [].; GO: 0005415 nucleoside:sodium symporter activity, 0006810 transport, 0016020 membrane; PDB: 3TIJ_A.
Probab=30.26 E-value=1.4e+02 Score=20.93 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025628 49 AVLALSLLAAIKITREETWEEFIDNMLFYAKLLL 82 (250)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~ 82 (250)
+++++.+..+-++||+.+|-..++....-.-++.
T Consensus 4 ~v~l~ia~l~S~~rk~I~wr~V~~gl~lQ~~la~ 37 (75)
T PF01773_consen 4 LVLLAIAWLFSENRKAIKWRTVIWGLGLQFVLAL 37 (75)
T ss_dssp HHHHHHHHHH-S-GGG--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcCChHHHHHHHHHHHHHHH
Confidence 3456666677788999999998887776444443
No 276
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=30.14 E-value=1.5e+02 Score=22.31 Aligned_cols=47 Identities=13% Similarity=0.037 Sum_probs=37.9
Q ss_pred cCCCCceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC
Q 025628 133 EGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL 180 (250)
Q Consensus 133 ~~~k~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~ 180 (250)
++-+++++||.=-|+-|+.-. --+.++++.++|+.+++.++..=+..
T Consensus 17 ~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 17 SKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred HHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 344566688888899999888 66689999999998899988877764
No 277
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=29.13 E-value=87 Score=23.48 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=24.0
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 182 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~ 182 (250)
..|+.+.|+.|++....+++- ++.|-.+|+-+.|
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-------~i~~~~~di~~~~ 35 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-------GIEPEIVEYLKTP 35 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-------CCCeEEEecccCC
Confidence 357889999999987666443 5566667776544
No 278
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=29.04 E-value=1.8e+02 Score=19.35 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=29.0
Q ss_pred EEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEE
Q 025628 143 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 203 (250)
Q Consensus 143 ~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTli 203 (250)
.++.+.|+.|++..=.++..... .+...+|....+....+.+ +..+++|++.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~-----~~~~~~~~~~~~~~~~~~~----p~~~~vP~l~ 54 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP-----YEYVEEDLGNKSELLLASN----PVHKKIPVLL 54 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC-----CEEEEeCcccCCHHHHHhC----CCCCCCCEEE
Confidence 35677899999988777665443 3334455432222222322 2224699875
No 279
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=28.85 E-value=51 Score=26.61 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=19.5
Q ss_pred CChhHHHHhCCccCCCCCCCCEEEEEeCCe
Q 025628 180 LFPNAAEKFGISLGGSMGQLPTYILFENNA 209 (250)
Q Consensus 180 ~~~~la~k~~I~~~~~~~~lPTlilf~~G~ 209 (250)
++.+.+.+.||.+ +||+++.+++.
T Consensus 157 ~~~~~a~~~gv~g------~Ptfvv~~~~~ 180 (193)
T cd03025 157 EDQKLARELGING------FPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHHcCCCc------cCEEEEEeCCe
Confidence 3456788899999 99999988775
No 280
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=28.60 E-value=3.8e+02 Score=23.08 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=41.0
Q ss_pred ccccCChhhHHHHHhcCCCCceEEEEEecCCC-hh-hHHHhhhHHHHHHHc---CCCCcEEEEEECCCChhHHHH----h
Q 025628 118 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCS-ST-CIRASRIFPELSIAY---SNKNVSFGIVDLGLFPNAAEK----F 188 (250)
Q Consensus 118 ~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC-~~-C~~~~p~~~~l~~~y---~~~~v~f~~VDv~~~~~la~k----~ 188 (250)
+...+++.+. +.+++=+++ +-|.+|.+-- ++ =....+.+.++-++| +..++++-.+|-++.++.+++ +
T Consensus 8 k~ysLS~~T~-~~L~~L~~p--V~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~ 84 (271)
T PF09822_consen 8 KRYSLSDQTK-KVLKSLDEP--VTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEY 84 (271)
T ss_pred CCccCCHHHH-HHHHhCCCC--EEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhc
Confidence 3445555443 333122344 6666666542 11 234444445554444 333899999999888887766 8
Q ss_pred CCcc
Q 025628 189 GISL 192 (250)
Q Consensus 189 ~I~~ 192 (250)
||..
T Consensus 85 Gi~~ 88 (271)
T PF09822_consen 85 GIQP 88 (271)
T ss_pred CCCc
Confidence 8876
No 281
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=28.30 E-value=1.7e+02 Score=19.55 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=29.1
Q ss_pred EEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCccCCCCCCCCEEEEEeCCe
Q 025628 143 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNA 209 (250)
Q Consensus 143 ~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~~~~~~~lPTlilf~~G~ 209 (250)
.+|.+-|+.|++..=.+.+.... .....+|.+.+.+ .+. ...-.+++|++. ++|+
T Consensus 4 Ly~~~~~~~~~~v~~~L~~~~i~-----~e~~~v~~~~~~~---~~~--~~~p~~~vP~l~--~~~~ 58 (73)
T cd03076 4 LTYFPVRGRAEAIRLLLADQGIS-----WEEERVTYEEWQE---SLK--PKMLFGQLPCFK--DGDL 58 (73)
T ss_pred EEEeCCcchHHHHHHHHHHcCCC-----CEEEEecHHHhhh---hhh--ccCCCCCCCEEE--ECCE
Confidence 34556789998776666655443 3444555432222 221 112235699874 4554
No 282
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=28.28 E-value=5.3e+02 Score=24.55 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=22.1
Q ss_pred hhhhhhhhhh--HHHHHHHHHHHHHHHHHhh
Q 025628 2 EAMKQVVSET--YYLSHFMAFFSYFVVRSSA 30 (250)
Q Consensus 2 ~~~~~~~~~~--yy~~n~~~~~~y~~~r~~~ 30 (250)
|-++|.-.|| |=++-+.+++.|.++-+..
T Consensus 316 E~~~~~~iHpiQY~LVGlAl~lFYlLLLSlS 346 (430)
T PF06123_consen 316 ELLSKLRIHPIQYLLVGLALVLFYLLLLSLS 346 (430)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899 7777888888888876654
No 283
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=27.51 E-value=96 Score=23.37 Aligned_cols=34 Identities=9% Similarity=0.077 Sum_probs=24.8
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 182 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~ 182 (250)
..|+.+.|+.|++....+++- ++.+-.+|+.+.|
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-------~i~~~~~di~~~p 35 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-------GIEPEVVKYLKNP 35 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-------CCCeEEEeccCCC
Confidence 357889999999988777552 5566667776554
No 284
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=26.30 E-value=3.7e+02 Score=22.25 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCccccccccccCChhh
Q 025628 90 DYHLALWFLVVFLVIYILTQQPVFQKLGISNKLTPLQ 126 (250)
Q Consensus 90 ~~~~~~~y~i~~~v~~~~~~~p~~~~~~~v~~l~~~~ 126 (250)
.+..+++|.+++-++....-.|-...-..+.+++-++
T Consensus 97 g~W~Gi~YG~~~W~ivF~~lnP~fp~~~~~~~l~~nT 133 (173)
T PF11085_consen 97 GPWPGILYGLAWWAIVFFVLNPIFPMIKPVTELDWNT 133 (173)
T ss_pred ccchHHHHHHHHHHHHHHHhcccccCChhhhhCchhH
Confidence 3578899998876655556667666655566655444
No 285
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=24.77 E-value=1.7e+02 Score=23.42 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=30.3
Q ss_pred EEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECC
Q 025628 141 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 179 (250)
Q Consensus 141 lV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~ 179 (250)
+..|+-.-||.|-...+.+.++.+++.+-++.+.-+.+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 567899999999999999999999994334555555543
No 286
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=24.36 E-value=1.8e+02 Score=21.52 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=21.1
Q ss_pred EecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCCh
Q 025628 144 FRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 182 (250)
Q Consensus 144 FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~ 182 (250)
|+-+.|..|++....+++ .++.+-.+|+.+.|
T Consensus 1 Y~~~~C~t~rka~~~L~~-------~gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-------NGIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-------TT--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHH-------cCCCeEeehhhhCC
Confidence 567899999999887764 26777788987654
No 287
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=24.35 E-value=44 Score=27.92 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=17.8
Q ss_pred hhHHHHhCCccCCCCCCCCEEEEEeCCeEEE
Q 025628 182 PNAAEKFGISLGGSMGQLPTYILFENNAEIN 212 (250)
Q Consensus 182 ~~la~k~~I~~~~~~~~lPTlilf~~G~e~~ 212 (250)
...++++||++ +||+++ ||+.+.
T Consensus 157 ~~~a~~~gI~g------tPtfiI--nGky~v 179 (207)
T PRK10954 157 EKAAADLQLRG------VPAMFV--NGKYMV 179 (207)
T ss_pred HHHHHHcCCCC------CCEEEE--CCEEEE
Confidence 34668889999 999998 777544
No 288
>PRK15201 fimbriae regulatory protein FimW; Provisional
Probab=23.61 E-value=1.3e+02 Score=25.19 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhccccCh-hhhhh-----hhhhHHHHHHHHHH------HHHHHHHhhhhHHHHHHHHHH
Q 025628 18 MAFFSYFVVRSSAAAVLSP-HIIHH-----LFYREIQAVLALSL------LAAIKITREETWEEFIDNMLF 76 (250)
Q Consensus 18 ~~~~~y~~~r~~~~~~~~~-~~~~~-----l~~~e~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~ 76 (250)
+..=+-++++.-.++-..| ++|++ |+.||+|++-+++- |.-.=.+...|...+++.++-
T Consensus 104 i~~k~~~il~~~al~~~~~~~~~~~~~~~~LSpRErEVLrLLAqGkTnKEIAe~L~IS~rTVkth~srImk 174 (198)
T PRK15201 104 ITRKMILILHKRALRHSVPSGICHYCTTRHFSVTERHLLKLIASGYHLSETAALLSLSEEQTKSLRRSIMR 174 (198)
T ss_pred HHHHHHHHHHHHHHHhhCCchhccccCCCCCCHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3333344444433333333 56766 68999999887653 111122225666677766665
No 289
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=23.21 E-value=1.8e+02 Score=25.81 Aligned_cols=71 Identities=11% Similarity=0.006 Sum_probs=40.6
Q ss_pred hcCCccccccccccCChhhHHHHHhcCCCCceEEEEEecCCChh-hHHHhhhHHHH----HHHcCCCCc-EEEEEECCCC
Q 025628 108 TQQPVFQKLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSST-CIRASRIFPEL----SIAYSNKNV-SFGIVDLGLF 181 (250)
Q Consensus 108 ~~~p~~~~~~~v~~l~~~~l~~~l~~~~k~~~vlV~FyA~WC~~-C~~~~p~~~~l----~~~y~~~~v-~f~~VDv~~~ 181 (250)
..+|...|+-.+...+++...+ +.-.++++|++|.=+.||. |=.+...+.++ .++...+.+ -|+.+|=.++
T Consensus 113 ~gk~~iGGpF~L~d~~Gk~~te---~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD 189 (280)
T KOG2792|consen 113 AGKPAIGGPFSLVDHDGKRVTE---KDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERD 189 (280)
T ss_pred cCCCccCCceEEEecCCCeecc---cccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccC
Confidence 3445555655555555444322 2235677999999999975 76655554444 333332222 5888887654
No 290
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=22.98 E-value=2.7e+02 Score=20.68 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=39.1
Q ss_pred EEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhCCcc------CCCCCCCCEEEEEeCCeEEEeee
Q 025628 142 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISL------GGSMGQLPTYILFENNAEINRFP 215 (250)
Q Consensus 142 V~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~I~~------~~~~~~lPTlilf~~G~e~~r~~ 215 (250)
|..|.+.+....+....-+++..-+..+++.|-.+|++.+++.-+...-.. ......+| .-+|.+|+-.+.+.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lp-PqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLP-PQIFNGDEYCGDYE 81 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S--EEEETTEEEEEHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCC-CEEEeCCEEEeeHH
Confidence 344555566677777777777666666699999999999776544443211 11222232 24567776555443
Q ss_pred C
Q 025628 216 A 216 (250)
Q Consensus 216 g 216 (250)
.
T Consensus 82 ~ 82 (99)
T PF04908_consen 82 D 82 (99)
T ss_dssp H
T ss_pred H
Confidence 3
No 291
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=22.73 E-value=54 Score=25.98 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=18.5
Q ss_pred CChhHHHHhCCccCCCCCCCCEEEEEeCCeEE
Q 025628 180 LFPNAAEKFGISLGGSMGQLPTYILFENNAEI 211 (250)
Q Consensus 180 ~~~~la~k~~I~~~~~~~~lPTlilf~~G~e~ 211 (250)
+..+.+.++||.+ .||+++ ||+-+
T Consensus 131 ~~~~~~~~~gi~g------TPt~iI--nG~~~ 154 (178)
T cd03019 131 KAEKLAKKYKITG------VPAFVV--NGKYV 154 (178)
T ss_pred HHHHHHHHcCCCC------CCeEEE--CCEEE
Confidence 3456788999999 999988 67633
No 292
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.63 E-value=5e+02 Score=22.52 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=38.8
Q ss_pred CceEEEEEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhHHHHhC-CccCCCCCCCCEEEEEeCCeEEE
Q 025628 137 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFG-ISLGGSMGQLPTYILFENNAEIN 212 (250)
Q Consensus 137 ~~~vlV~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~la~k~~-I~~~~~~~~lPTlilf~~G~e~~ 212 (250)
+...|..+|+ ||..++.. ++.+.++=...++..|++..+++.-+.+ +.+ ++| ++.+||+.+.
T Consensus 8 ~~vrL~~~w~--sPfa~R~~-----iaL~~KgI~yE~veedl~~Ks~~ll~~np~hk-----KVP--vL~Hn~k~i~ 70 (231)
T KOG0406|consen 8 GTVKLLGMWF--SPFAQRVR-----IALKLKGIPYEYVEEDLTNKSEWLLEKNPVHK-----KVP--VLEHNGKPIC 70 (231)
T ss_pred CeEEEEEeec--ChHHHHHH-----HHHHhcCCceEEEecCCCCCCHHHHHhccccc-----cCC--EEEECCceeh
Confidence 3346777777 78777754 3334443345677788876666665555 544 599 4557888743
No 293
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=22.60 E-value=2.4e+02 Score=18.75 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=30.5
Q ss_pred EEecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCC----hhHHHHhCCccCCCCCCCCEEEEEeCCe
Q 025628 143 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF----PNAAEKFGISLGGSMGQLPTYILFENNA 209 (250)
Q Consensus 143 ~FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~----~~la~k~~I~~~~~~~~lPTlilf~~G~ 209 (250)
.++.+-|+.|++..-.+++.... ++...+|..+. ++..+... .+++|++. ++|.
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~-----~~~~~v~~~~~~~~~~~~~~~~p------~~~vP~L~--~~~~ 60 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIP-----FEECPIDLRKGEQLTPEFKKINP------FGKVPAIV--DGDF 60 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCC-----cEEEEecCCCCCcCCHHHHHhCc------CCCCCEEE--ECCE
Confidence 46677899998887666655443 44455665432 22222222 34599875 3554
No 294
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=22.60 E-value=2e+02 Score=19.30 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=27.7
Q ss_pred EecCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCC---ChhHHHHhCCccCCCCCCCCEEEE
Q 025628 144 FRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL---FPNAAEKFGISLGGSMGQLPTYIL 204 (250)
Q Consensus 144 FyA~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~---~~~la~k~~I~~~~~~~~lPTlil 204 (250)
|+.+-|+.|.+..-.++.... .++...+|..+ .++..+..- .+++|++..
T Consensus 4 y~~~~~~~~~~~~~~l~~~gi-----~~~~~~v~~~~~~~~~~~~~~nP------~~~vP~L~~ 56 (75)
T cd03044 4 YTYPGNPRSLKILAAAKYNGL-----DVEIVDFQPGKENKTPEFLKKFP------LGKVPAFEG 56 (75)
T ss_pred ecCCCCccHHHHHHHHHHcCC-----ceEEEecccccccCCHHHHHhCC------CCCCCEEEc
Confidence 566778888877666654432 45556666542 222222211 245998864
No 295
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=22.54 E-value=1.5e+02 Score=23.98 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=25.2
Q ss_pred Chhhhhh-hhhhHHHHHHHHHHHHHHHHHhhccccChhhhhhhhhhHHHHHH
Q 025628 1 MEAMKQV-VSETYYLSHFMAFFSYFVVRSSAAAVLSPHIIHHLFYREIQAVL 51 (250)
Q Consensus 1 ~~~~~~~-~~~~yy~~n~~~~~~y~~~r~~~~~~~~~~~~~~l~~~e~~~~~ 51 (250)
||-++.. +...-.+.=+.+.+.|++++..- -|++...++.|+..|--
T Consensus 1 mPQfd~~~~~sqifw~iI~FlILy~ll~kf~----~ppI~~iLe~R~~~I~~ 48 (155)
T PRK06569 1 MPQFDIATYYSQIFWLIVTFGLLYIFVYKFI----TPKAEEIFNNRQTNIQD 48 (155)
T ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHh
Confidence 4555533 22233333333444555555533 46888888877766643
No 296
>PRK10387 glutaredoxin 2; Provisional
Probab=22.30 E-value=2.1e+02 Score=23.28 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=15.1
Q ss_pred EecCCChhhHHHhhhHHHHHH
Q 025628 144 FRAQCSSTCIRASRIFPELSI 164 (250)
Q Consensus 144 FyA~WC~~C~~~~p~~~~l~~ 164 (250)
++.+.||+|.+..=.++....
T Consensus 4 y~~~~sp~~~kv~~~L~~~gi 24 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLKNI 24 (210)
T ss_pred EeCCCCchHHHHHHHHHHcCC
Confidence 456779999998776655543
No 297
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.24 E-value=5.3e+02 Score=22.48 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=28.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhccccCh---hhhhh
Q 025628 5 KQVVSETYYLSHFMAFFSYFVVRSSAAAVLSP---HIIHH 41 (250)
Q Consensus 5 ~~~~~~~yy~~n~~~~~~y~~~r~~~~~~~~~---~~~~~ 41 (250)
...++.|||.++++++.++..+++.-..+... .+.++
T Consensus 13 ~~~~~n~llalafll~rs~~pic~~l~~~~~~e~cdld~R 52 (265)
T KOG0914|consen 13 PYYVSNPLLALAFLLFRSTLPICSSLFPYTGHEQCDLDSR 52 (265)
T ss_pred chHHHhHHHHHHHHHHhhhhhhhcccccccCCccccchHH
Confidence 35689999999999999999887766556655 44444
No 298
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=22.00 E-value=1.4e+02 Score=24.52 Aligned_cols=19 Identities=26% Similarity=0.065 Sum_probs=13.6
Q ss_pred ChhhhhhhhhhHHHHHHHH
Q 025628 35 SPHIIHHLFYREIQAVLAL 53 (250)
Q Consensus 35 ~~~~~~~l~~~e~~~~~~~ 53 (250)
.||+...++.|+..|---+
T Consensus 53 ~~PI~~~l~~R~~~I~~~l 71 (181)
T PRK13454 53 LPRIGAVLAERQGTITNDL 71 (181)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 3589999988887775433
No 299
>PHA02828 putative transmembrane protein; Provisional
Probab=21.33 E-value=1.8e+02 Score=21.43 Aligned_cols=18 Identities=11% Similarity=0.416 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 025628 13 YLSHFMAFFSYFVVRSSA 30 (250)
Q Consensus 13 y~~n~~~~~~y~~~r~~~ 30 (250)
|++|.++.+.|.+.+...
T Consensus 4 yiinpil~ifYfi~~~vs 21 (100)
T PHA02828 4 FVINMIYNLFYYITSSVS 21 (100)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 889999999999998877
No 300
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=21.19 E-value=2.3e+02 Score=28.55 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=51.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhccccChhhhhhh----------hhhHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 025628 2 EAMKQVVSETYYLSHFMAFFSYFVVRSSAAAVLSPHIIHHL----------FYREIQAVLALSLLAAIKITREETWEEFI 71 (250)
Q Consensus 2 ~~~~~~~~~~yy~~n~~~~~~y~~~r~~~~~~~~~~~~~~l----------~~~e~~~~~~~~~~~~~~~~~~~~~~~~l 71 (250)
..||..+.+|-|=+-++..++++|-+.-+ +++.-..+.| |....-+...+.+++|+==.-+.+...+|
T Consensus 73 ~~l~~~~~~~~~Rl~~L~Ll~~~v~~qp~--~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L 150 (668)
T PF04388_consen 73 DKLNDYFVKPSYRLQALTLLGHFVRSQPP--WLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHL 150 (668)
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHhcCCc--hHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHH
Confidence 46899999999999999999987665333 3332222222 44444444555555666555578889999
Q ss_pred HHHHH-HHHHH
Q 025628 72 DNMLF-YAKLL 81 (250)
Q Consensus 72 ~~~~~-~~k~~ 81 (250)
.++|. |++++
T Consensus 151 ~~Lf~If~Rl~ 161 (668)
T PF04388_consen 151 PDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHH
Confidence 98887 55554
No 301
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=20.87 E-value=5.4e+02 Score=22.03 Aligned_cols=90 Identities=13% Similarity=0.200 Sum_probs=54.6
Q ss_pred HHHHHhcCCCCceEEEEEe-----cCCChhhHHHhhhHHHHHHHcCCCCcEEEEEECCCChhH-----------------
Q 025628 127 LEALLTEGKTSRYWLVEFR-----AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNA----------------- 184 (250)
Q Consensus 127 l~~~l~~~~k~~~vlV~Fy-----A~WC~~C~~~~p~~~~l~~~y~~~~v~f~~VDv~~~~~l----------------- 184 (250)
+.++. .++.+.++..|. ..-|+-|..+...+..........++.|+.|.-.-...+
T Consensus 60 L~dLF--~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~ 137 (211)
T PF05988_consen 60 LADLF--EGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSY 137 (211)
T ss_pred HHHHc--CCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcC
Confidence 65666 466666666665 678999999999995444445555788888876533322
Q ss_pred ----HHHhCCccCCCCCCCCEEEEE-eCCeEEEeeeCCcC
Q 025628 185 ----AEKFGISLGGSMGQLPTYILF-ENNAEINRFPAFGF 219 (250)
Q Consensus 185 ----a~k~~I~~~~~~~~lPTlilf-~~G~e~~r~~g~~~ 219 (250)
...|++... ...+.|.+-.| ++|.++.+.-....
T Consensus 138 gs~Fn~D~~~~~~-~~~~~~g~svF~Rdg~~VfhTyst~~ 176 (211)
T PF05988_consen 138 GSDFNYDFGVSFD-EGGEMPGLSVFLRDGGRVFHTYSTYG 176 (211)
T ss_pred CCcccccccceec-cCCCceeEEEEEEcCCEEEEEeecCC
Confidence 223333221 11457766555 67777766555433
No 302
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=20.45 E-value=4.4e+02 Score=20.87 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=49.2
Q ss_pred cccC-ChhhHHHHHhcCCCCceEEEEEecCCChhhHH-HhhhHHHHHHHcCCCCcEEEEEECCCChhH---HHHhCCccC
Q 025628 119 SNKL-TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIR-ASRIFPELSIAYSNKNVSFGIVDLGLFPNA---AEKFGISLG 193 (250)
Q Consensus 119 v~~l-~~~~l~~~l~~~~k~~~vlV~FyA~WC~~C~~-~~p~~~~l~~~y~~~~v~f~~VDv~~~~~l---a~k~~I~~~ 193 (250)
++++ ++++.++.+ ++.++. .|| .-.+-|+---. .+|-.. .+.++..+.=.++.|=.+.+.+. ++.|=..-.
T Consensus 18 f~eL~T~e~Vd~~~-~~~~GT-tlV-vVNSVCGCAag~ARPa~~-~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~~p 93 (136)
T PF06491_consen 18 FEELTTAEEVDEAL-KNKEGT-TLV-VVNSVCGCAAGNARPAAA-MALQNDKKPDHLVTVFAGQDKEATAKAREYFEPYP 93 (136)
T ss_dssp -EE--SHHHHHHHH-HH--SE-EEE-EEE-SSHHHHHTHHHHHH-HHHHHSS--SEEEEEETTTSHHHHHHHHHTSTTS-
T ss_pred ccccCCHHHHHHHH-hCCCCc-EEE-EEeccccccccccCHHHH-HHHhCCCCCCceEEeccCCCHHHHHHHHHhcCCCC
Confidence 4455 567799999 533442 333 33456754333 344432 22222333446667777776664 334332222
Q ss_pred CCCCCCCEEEEEeCCeEEEeeeCCcCCCc
Q 025628 194 GSMGQLPTYILFENNAEINRFPAFGFEEK 222 (250)
Q Consensus 194 ~~~~~lPTlilf~~G~e~~r~~g~~~~g~ 222 (250)
+. =|++.+||+|+.+.-++--.-+|+
T Consensus 94 PS---SPS~ALfKdGelvh~ieRh~IEGr 119 (136)
T PF06491_consen 94 PS---SPSIALFKDGELVHFIERHHIEGR 119 (136)
T ss_dssp -----SSEEEEEETTEEEEEE-GGGTTTS
T ss_pred CC---CchheeeeCCEEEEEeehhhcCCC
Confidence 22 489999999998876665544443
No 303
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=20.04 E-value=4.4e+02 Score=20.75 Aligned_cols=80 Identities=11% Similarity=0.044 Sum_probs=49.1
Q ss_pred CCCceEEEEEecCCChhhHHHhhhH--HHHHHHcCCCCcEEEEEECCCChh------------------HHHHhCCccCC
Q 025628 135 KTSRYWLVEFRAQCSSTCIRASRIF--PELSIAYSNKNVSFGIVDLGLFPN------------------AAEKFGISLGG 194 (250)
Q Consensus 135 ~k~~~vlV~FyA~WC~~C~~~~p~~--~~l~~~y~~~~v~f~~VDv~~~~~------------------la~k~~I~~~~ 194 (250)
...|..+|+.+.|-.+.+..+-... .+.-.+|=+.++.+-.-|++.... .++.++...
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~-- 96 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ-- 96 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC--
Confidence 3456799999999886555544332 222222222478888899886431 344566777
Q ss_pred CCCCCCEEEEEeCC----eEEEeeeCCcCC
Q 025628 195 SMGQLPTYILFENN----AEINRFPAFGFE 220 (250)
Q Consensus 195 ~~~~lPTlilf~~G----~e~~r~~g~~~~ 220 (250)
+|.+.+.-.. +.+.|..|..+-
T Consensus 97 ----fP~~avI~~~~~~~~vl~~i~G~~~~ 122 (136)
T cd02990 97 ----LPAILIIMGKRSSNEVLNVIQGNTGV 122 (136)
T ss_pred ----CCeEEEEEecCCceEEEEEEECCCCH
Confidence 9988777422 556677776443
Done!