BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025629
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 96/193 (49%), Gaps = 10/193 (5%)
Query: 58 PTSKVFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFLVKQILIGIAN- 116
P VFL G S+GGA+A+ ++P ++G +L++P+ + F K + + N
Sbjct: 129 PGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTF--KVLAAKVLNL 186
Query: 117 ILPKHKLVPQKDLAEAAFRDLKNRELTKYNV--IVYKDKPRLRTALELLKTTEGIERRLE 174
+LP L P +++ E+ YN ++ + ++ ++LL +ER L
Sbjct: 187 VLPNLSLGP----IDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALP 242
Query: 175 KVSLPLLILHGENDTVTDPSVSKALYEKASSKDKKCILYKDAFHSLLEGEPDDMIIRVFA 234
K+++P L+L G D + D + L E A S+DK +Y+ A+H +L E ++ VF
Sbjct: 243 KLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYEGAYH-VLHKELPEVTNSVFH 301
Query: 235 DIISWLDDHSRSS 247
+I W+ + ++
Sbjct: 302 EINMWVSQRTATA 314
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 96/193 (49%), Gaps = 10/193 (5%)
Query: 58 PTSKVFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFLVKQILIGIAN- 116
P VFL G S+GGA+A+ ++P ++G +L++P+ + F K + + N
Sbjct: 130 PGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTF--KVLAAKVLNL 187
Query: 117 ILPKHKLVPQKDLAEAAFRDLKNRELTKYNV--IVYKDKPRLRTALELLKTTEGIERRLE 174
+LP L P +++ E+ YN ++ + ++ ++LL +ER L
Sbjct: 188 VLPNLSLGP----IDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALP 243
Query: 175 KVSLPLLILHGENDTVTDPSVSKALYEKASSKDKKCILYKDAFHSLLEGEPDDMIIRVFA 234
K+++P L+L G D + D + L E A S+DK +Y+ A+H +L E ++ VF
Sbjct: 244 KLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYEGAYH-VLHKELPEVTNSVFH 302
Query: 235 DIISWLDDHSRSS 247
+I W+ + ++
Sbjct: 303 EINMWVSQRTATA 315
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 10/193 (5%)
Query: 58 PTSKVFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFLVKQILIGIAN- 116
P VFL G S GGA+A+ ++P ++G +L++P+ + F K + + N
Sbjct: 129 PGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLISPLVLANPESATTF--KVLAAKVLNL 186
Query: 117 ILPKHKLVPQKDLAEAAFRDLKNRELTKYNV--IVYKDKPRLRTALELLKTTEGIERRLE 174
+LP L P +++ E+ YN ++ + ++ ++LL +ER L
Sbjct: 187 VLPNLSLGP----IDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALP 242
Query: 175 KVSLPLLILHGENDTVTDPSVSKALYEKASSKDKKCILYKDAFHSLLEGEPDDMIIRVFA 234
K+++P L+L G D + D + L E A S+DK +Y+ A+H +L E ++ VF
Sbjct: 243 KLTVPFLLLQGSADRLCDSKGAYLLXELAKSQDKTLKIYEGAYH-VLHKELPEVTNSVFH 301
Query: 235 DIISWLDDHSRSS 247
+I W+ + ++
Sbjct: 302 EINXWVSQRTATA 314
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 95/192 (49%), Gaps = 8/192 (4%)
Query: 58 PTSKVFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFLVKQILIGIANI 117
P VFL G S+GGA+A+ ++P ++G +L++P+ + F V + + ++
Sbjct: 112 PGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKV-LNSV 170
Query: 118 LPKHKLVPQKDLAEAAFRDLKNRELTKYNV--IVYKDKPRLRTALELLKTTEGIERRLEK 175
LP P +++ E+ YN ++ + ++ ++LL +ER L K
Sbjct: 171 LPNLSSGP----IDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPK 226
Query: 176 VSLPLLILHGENDTVTDPSVSKALYEKASSKDKKCILYKDAFHSLLEGEPDDMIIRVFAD 235
+++P L+L G D + D + L E A S+DK +Y+ A+H +L E ++ VF +
Sbjct: 227 LTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYEGAYH-VLHKELPEVTNSVFHE 285
Query: 236 IISWLDDHSRSS 247
I W+ + ++
Sbjct: 286 INMWVSQRTATA 297
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 42/196 (21%)
Query: 52 MSSSIIPTSKVFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFLVKQIL 111
+ S + KVFL G S GGA+AL +K + G I+ + + P VK++
Sbjct: 89 LRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV------PLTVKEMN 142
Query: 112 IGIANILPKHKLVPQKDLAEAAFRDLKNRELTKYNVIVYKDKPRLRTA---LELLKTTEG 168
I + K++ +K + ++ + + +E Y + + LR+ E+LK+ E
Sbjct: 143 RLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNY----FYHQHLLRSEDWPPEVLKSLEY 198
Query: 169 IERR--------------------------LEKVSLPLLILHGENDTVTDPSVSKALYEK 202
ERR + + +P LI GE D VT P+V++ ++EK
Sbjct: 199 AERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGEYDEVT-PNVARVIHEK 257
Query: 203 ASSKDKKCILYKDAFH 218
+ + +++D H
Sbjct: 258 IAGSELH--VFRDCSH 271
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 40/185 (21%)
Query: 52 MSSSIIPTSKVFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFLVKQIL 111
+ S + KVFL G S GGA+AL +K + G I+ + + P VK++
Sbjct: 89 LRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV------PLTVKEMN 142
Query: 112 IGIANILPKHKLVPQKDLAEAAFRDLKNRELTKYNVIVYKDKPRLRTA---LELLKTTEG 168
I + K++ +K + ++ + + +E Y + + LR+ E+LK+ E
Sbjct: 143 RLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNY----FYHQHLLRSEDWPPEVLKSLEY 198
Query: 169 IERR--------------------------LEKVSLPLLILHGENDTVTDPSVSKALYEK 202
ERR + + +P LI GE D VT P+V++ ++EK
Sbjct: 199 AERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGEYDEVT-PNVARVIHEK 257
Query: 203 ASSKD 207
+ +
Sbjct: 258 IAGSE 262
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 42/196 (21%)
Query: 52 MSSSIIPTSKVFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFLVKQIL 111
+ S + KVFL G S GGA+AL +K + G I+ + + P VK++
Sbjct: 89 LRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV------PLTVKEMN 142
Query: 112 IGIANILPKHKLVPQKDLAEAAFRDLKNRELTKYNVIVYKDKPRLRTA---LELLKTTEG 168
I + K++ +K + ++ + + +E Y + + LR+ E+LK+ E
Sbjct: 143 RLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNY----FYHQHLLRSEDWPPEVLKSLEY 198
Query: 169 IERR--------------------------LEKVSLPLLILHGENDTVTDPSVSKALYEK 202
ERR + + +P LI GE D VT P+V++ ++EK
Sbjct: 199 AERRNVFRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGEYDEVT-PNVARVIHEK 257
Query: 203 ASSKDKKCILYKDAFH 218
+ + +++D H
Sbjct: 258 IAGSELH--VFRDCSH 271
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 42/196 (21%)
Query: 52 MSSSIIPTSKVFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFLVKQIL 111
+ S + KVFL G S GGA+AL +K + G I+ + + P VK++
Sbjct: 89 LRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV------PLTVKEMN 142
Query: 112 IGIANILPKHKLVPQKDLAEAAFRDLKNRELTKYNVIVYKDKPRLRTA---LELLKTTEG 168
I + K++ +K + ++ + + +E Y + + LR+ E+LK+ E
Sbjct: 143 RLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNY----FYHQHLLRSEDWPPEVLKSLEY 198
Query: 169 IERR--------------------------LEKVSLPLLILHGENDTVTDPSVSKALYEK 202
ERR + + +P LI GE D VT P+V++ ++EK
Sbjct: 199 AERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGEYDQVT-PNVARVIHEK 257
Query: 203 ASSKDKKCILYKDAFH 218
+ + +++D H
Sbjct: 258 IAGSELH--VFRDCSH 271
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 42/196 (21%)
Query: 52 MSSSIIPTSKVFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFLVKQIL 111
+ S + KVFL G S GGA+AL +K + G I+ + + P VK++
Sbjct: 89 LRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV------PLTVKEMN 142
Query: 112 IGIANILPKHKLVPQKDLAEAAFRDLKNRELTKYNVIVYKDKPRLRTA---LELLKTTEG 168
I + K++ +K + ++ + + +E Y + + LR+ E+LK+ E
Sbjct: 143 RLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNY----FYHQHLLRSEDWPPEVLKSLEY 198
Query: 169 IERR--------------------------LEKVSLPLLILHGENDTVTDPSVSKALYEK 202
ERR + + +P LI GE D VT P+V++ ++EK
Sbjct: 199 AERRNVYRIMNGPNQFTITGTIKDWDITDKISAIKIPTLITVGEYDEVT-PNVARVIHEK 257
Query: 203 ASSKDKKCILYKDAFH 218
+ + +++D H
Sbjct: 258 IAGSELH--VFRDCSH 271
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 40/185 (21%)
Query: 52 MSSSIIPTSKVFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFLVKQIL 111
+ S + KVFL G + GGA+AL +K + G I+ + + P VK++
Sbjct: 89 LRSKLFGNEKVFLMGSAYGGALALAYAVKYQDHLKGLIVSGGLSSV------PLTVKEMN 142
Query: 112 IGIANILPKHKLVPQKDLAEAAFRDLKNRELTKYNVIVYKDKPRLRTA---LELLKTTEG 168
I + K++ +K + ++ + + +E Y + + LR+ E+LK+ E
Sbjct: 143 RLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNY----FYHQHLLRSEDWPPEVLKSLEY 198
Query: 169 IERR--------------------------LEKVSLPLLILHGENDTVTDPSVSKALYEK 202
ERR + + +P LI GE D VT P+V++ ++EK
Sbjct: 199 AERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGEYDEVT-PNVARVIHEK 257
Query: 203 ASSKD 207
+ +
Sbjct: 258 IAGSE 262
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 40/185 (21%)
Query: 52 MSSSIIPTSKVFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFLVKQIL 111
+ S + KVFL G S GGA+AL +K + G I+ + + P VK+
Sbjct: 89 LRSKLFGNEKVFLXGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV------PLTVKEXN 142
Query: 112 IGIANILPKHKLVPQKDLAEAAFRDLKNRELTKYNVIVYKDKPRLRTA---LELLKTTEG 168
I + K++ +K + ++ + + +E Y + + LR+ E+LK+ E
Sbjct: 143 RLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNY----FYHQHLLRSEDWPPEVLKSLEY 198
Query: 169 IERR--------------------------LEKVSLPLLILHGENDTVTDPSVSKALYEK 202
ERR + + +P LI GE D VT P+V++ ++EK
Sbjct: 199 AERRNVYRIXNGPNEFTITGTIKDWDITDKISAIKIPTLITVGEYDEVT-PNVARVIHEK 257
Query: 203 ASSKD 207
+ +
Sbjct: 258 IAGSE 262
>pdb|3DKR|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DLT|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DYI|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DYV|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3E1G|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
Length = 251
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 60 SKVFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFL 106
+KVF+FG SLGG A+K P +G + +P+ +VP FL
Sbjct: 93 AKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFL 139
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 74/173 (42%), Gaps = 30/173 (17%)
Query: 48 GWLMMSSSIIPTSKVFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFLV 107
GWL I F+ G S+GG + L + P+ + P+ D +
Sbjct: 102 GWLKQRCQTI-----FVTGLSMGGTLTLYLAEHHPDICG----IVPINAAVD-------I 145
Query: 108 KQILIGI--ANILPKHKLVPQKDLAEAAFRDLKNRELTKYNVIVYKDKPRLRTALELLKT 165
I G+ LP++ ++ DLKN ++ + + Y+ P + L+L +
Sbjct: 146 PAIAAGMTGGGELPRY--------LDSIGSDLKNPDVKE---LAYEKTPTA-SLLQLARL 193
Query: 166 TEGIERRLEKVSLPLLILHGENDTVTDPSVSKALYEKASSKDKKCILYKDAFH 218
+ +L+++ P LI + D V P + +++ SS +K+ + ++++H
Sbjct: 194 MAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGISSTEKEIVRLRNSYH 246
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 173 LEKVSLPLLILHGENDTVTDPSVSKALYEKASSKDKKCILYKDAFHSLLEGEPDDMIIRV 232
L+ +++P+L++HG++D V P + K+ K I YK A H + P +V
Sbjct: 216 LKGITIPVLVIHGDDDQVV-PYADSGVLSAKLVKNGKLITYKGAPHGI----PTTHADKV 270
Query: 233 FADIISWL 240
AD++ +L
Sbjct: 271 NADLLEFL 278
>pdb|3FCX|A Chain A, Crystal Structure Of Human Esterase D
pdb|3FCX|B Chain B, Crystal Structure Of Human Esterase D
Length = 282
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 5 TLAHFSLKELQGSWHHLDTEFSLWITLDLAFQQVFMATFPALTGWLMMSSSIIPTSKVFL 64
T A F + + W T + ++ + Q+ A FP + ++ +
Sbjct: 101 TGAGFYVDATEDPW---KTNYRMYSYVTEELPQLINANFP------------VDPQRMSI 145
Query: 65 FGQSLGGAVALKVHLKQPNAWSGAILVAPMCK 96
FG S+GG AL LK P + AP+C
Sbjct: 146 FGHSMGGHGALICALKNPGKYKSVSAFAPICN 177
>pdb|3LLC|A Chain A, Crystal Structure Of Putative Hydrolase (Yp_002548124.1)
From Agrobacterium Vitis S4 At 1.80 A Resolution
Length = 270
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 61 KVFLFGQSLGGAVAL------KVHLKQPNAWSGAILVAPMCKIADDMVPPFL 106
K L G S GG +AL K P SG +L+AP D++ P L
Sbjct: 107 KAILVGSSXGGWIALRLIQELKARHDNPTQVSGXVLIAPAPDFTSDLIEPLL 158
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 39/182 (21%)
Query: 36 QQVFMATFPA-LTGWLMMSSSII-------PTSKVFLFGQSLGGAVALKVHLKQPNAWSG 87
Q + T+P + W+ M I K + G S+GGAV L++ ++ P +
Sbjct: 71 QSEYPETYPGHIMSWVGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDK 130
Query: 88 AILV----APMCKIADDMVPPFLVKQILIGIANILPKHKLVPQKDLAEAAFRDLKN---- 139
L+ APM + PP L + + +L P ++L + D +N
Sbjct: 131 VALMGSVGAPM-----NARPPELAR-----LLAFYADPRLTPYRELIHSFVYDPENFPGM 180
Query: 140 RELTKYNVIVYKDKPRLRTALELLKTTEGIERRLEKVSLP----------LLILHGENDT 189
E+ K V D P +R E++ E ++ +E + +P +L+ HG D
Sbjct: 181 EEIVKSRFEVAND-PEVRRIQEVM--FESMKAGMESLVIPPATLGRLPHDVLVFHGRQDR 237
Query: 190 VT 191
+
Sbjct: 238 IV 239
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 112 IGIANILPKHKLVPQKDLAEAAFRDLKNRELTKYNVIVYKDKPRLRTALELLKTTEGIER 171
+G A +L K VP +A + D +N+ DKP L+ + + GI++
Sbjct: 32 VGPATVLAMGKAVPANVFEQATYPDFF------FNITNSNDKPALKAKFQRICDKSGIKK 85
Query: 172 R 172
R
Sbjct: 86 R 86
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 178 LPLLILHGENDTVTDPSVSKALYEKASSK 206
+P+L LHG D V DP++ +A ++ ++
Sbjct: 167 IPVLHLHGSQDDVVDPALGRAAHDALQAQ 195
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 169 IERRLEKVSLPLLILHGENDTVTDPSVSKALYEKASSKDKKCILYKDAFHSL 220
+ LEK ++P LI+HG++D S L +A + K L K H L
Sbjct: 213 FRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEA-IPNSKVALIKGGPHGL 263
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 26/103 (25%)
Query: 165 TTEGIERRLEKVSLPLLILHGENDTVTDPSVSKALYEK-----------ASSKDKKCILY 213
T E +ER L+K+ + +HG++ V +A Y+K AS +K +L
Sbjct: 425 TDEELERTLDKIMILFRFIHGKD-------VFEAFYKKDLAKRLLVGKSASVDAEKSMLS 477
Query: 214 K------DAFHSLLEGEPDDMIIRVFADIISWLDDHSRSSTDS 250
K AF S LEG DM + DI+ H ++ +DS
Sbjct: 478 KLKHECGAAFTSKLEGMFKDM--ELSKDIMVHFKQHMQNQSDS 518
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 26/103 (25%)
Query: 165 TTEGIERRLEKVSLPLLILHGENDTVTDPSVSKALYEK-----------ASSKDKKCILY 213
T E +ER L+K+ + +HG++ V +A Y+K AS +K +L
Sbjct: 408 TDEELERTLDKIMILFRFIHGKD-------VFEAFYKKDLAKRLLVGKSASVDAEKSMLS 460
Query: 214 K------DAFHSLLEGEPDDMIIRVFADIISWLDDHSRSSTDS 250
K AF S LEG DM + DI+ H ++ +DS
Sbjct: 461 KLKHECGAAFTSKLEGMFKDM--ELSKDIMVHFKQHMQNQSDS 501
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,218,819
Number of Sequences: 62578
Number of extensions: 271677
Number of successful extensions: 779
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 26
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)