BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025630
         (250 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QK3|A Chain A, Crystal Structure Of Human Beta-Crystallin B3
 pdb|3QK3|B Chain B, Crystal Structure Of Human Beta-Crystallin B3
 pdb|3QK3|C Chain C, Crystal Structure Of Human Beta-Crystallin B3
          Length = 184

 Score = 27.7 bits (60), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 18/24 (75%)

Query: 227 FSQWDSFFSQRDHDTILQVCPINI 250
           + +WD++ + RD D++L + P+NI
Sbjct: 71  YPRWDAWSNSRDSDSLLSLRPLNI 94


>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
           Dependent Methyltransferase From Listeria Monocytogenes
 pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
           Dependent Methyltransferase From Listeria Monocytogenes
          Length = 253

 Score = 26.9 bits (58), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 27/151 (17%)

Query: 41  SHRPRNGED----GRWAWIGLLGAELWFSLYWVLTQALRWNCVYRRTFKDRLSQRYENDL 96
           S  PR+ E     G W  +  +  +        L     W+C+Y        ++     +
Sbjct: 18  SQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIY-------AAEHGAKKV 70

Query: 97  PGVDI---FVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEA 153
            G+D+    +  A  KT  P++            Y  + +     +  A+++   +L  A
Sbjct: 71  LGIDLSERMLTEAKRKTTSPVVC-----------YEQKAIEDIAIEPDAYNVVLSSL--A 117

Query: 154 SHFAEHWIPYCKKFYVEPRSPGAYFQSISEP 184
            H+   +   CKK Y+  +S G++  S+  P
Sbjct: 118 LHYIASFDDICKKVYINLKSSGSFIFSVEHP 148


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,861,519
Number of Sequences: 62578
Number of extensions: 320357
Number of successful extensions: 859
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 4
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)