Query 025630
Match_columns 250
No_of_seqs 215 out of 584
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:16:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 99.7 4.5E-17 1.5E-21 164.9 18.3 144 21-171 66-216 (802)
2 1xhb_A Polypeptide N-acetylgal 97.7 3.9E-05 1.3E-09 71.7 6.8 58 92-152 24-82 (472)
3 3bcv_A Putative glycosyltransf 97.7 4.7E-05 1.6E-09 63.5 5.7 52 95-152 3-54 (240)
4 2ffu_A Ppgalnact-2, polypeptid 97.7 4.5E-05 1.6E-09 72.1 5.8 54 92-148 61-114 (501)
5 2d7i_A Polypeptide N-acetylgal 97.6 6E-05 2E-09 73.2 6.5 58 92-152 107-165 (570)
6 1qg8_A Protein (spore coat pol 97.6 4.1E-05 1.4E-09 64.6 4.4 49 97-151 1-49 (255)
7 2z86_A Chondroitin synthase; G 97.6 4.4E-05 1.5E-09 73.7 4.7 51 95-150 91-141 (625)
8 3ckj_A Putative uncharacterize 97.2 0.00032 1.1E-08 62.9 4.7 54 94-152 45-98 (329)
9 2z86_A Chondroitin synthase; G 96.6 0.0015 5.1E-08 63.0 4.6 52 95-152 373-424 (625)
10 3f1y_A Mannosyl-3-phosphoglyce 96.5 0.0015 5.1E-08 60.9 3.6 54 94-152 91-146 (387)
11 3l7i_A Teichoic acid biosynthe 96.1 0.00093 3.2E-08 66.3 0.0 51 97-153 2-52 (729)
12 4fix_A UDP-galactofuranosyl tr 95.1 0.0063 2.1E-07 60.5 1.6 46 95-144 178-224 (657)
13 1fo8_A Alpha-1,3-mannosyl-glyc 93.9 0.046 1.6E-06 50.4 4.4 48 96-148 1-48 (343)
14 2bo4_A Mannosylglycerate synth 90.0 0.35 1.2E-05 45.2 5.4 47 101-154 4-50 (397)
15 2fy7_A Beta-1,4-galactosyltran 89.1 0.2 6.7E-06 44.7 2.8 41 96-142 64-107 (287)
16 2zu9_A Mannosyl-3-phosphoglyce 87.3 0.73 2.5E-05 43.4 5.5 41 97-146 51-91 (394)
17 2nxv_A ATP synthase subunits r 83.3 1.1 3.9E-05 38.0 4.4 43 96-144 15-58 (249)
18 2wvl_A Mannosyl-3-phosphoglyce 78.4 2.9 9.9E-05 39.4 5.6 44 95-147 51-94 (391)
19 2yy0_A C-MYC-binding protein; 27.6 64 0.0022 21.7 3.6 23 190-212 18-40 (53)
20 1c6v_A Protein (SIV integrase) 26.0 1.2E+02 0.0042 22.4 5.5 45 111-171 43-88 (164)
21 2x78_A Integrase; viral protei 21.6 1.5E+02 0.0052 23.0 5.4 45 111-171 52-97 (200)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=99.74 E-value=4.5e-17 Score=164.88 Aligned_cols=144 Identities=21% Similarity=0.184 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCCCC-CchHHHHHHHHHHHHHHHHHHHHHhhhhceecCCcCcccchhhcccCCCCc
Q 025630 21 RRLFAASIFVGIGFIVVYRLS-HRPRNG-EDGRWAWIGLLGAELWFSLYWVLTQALRWNCVYRRTFKDRLSQRYENDLPG 98 (250)
Q Consensus 21 ~R~~~~~~l~~l~~yl~wR~~-tlp~~~-~~~~~~w~~l~~aEl~~~~~~~l~~~~~~~P~~R~~~~d~L~~~~~~~lP~ 98 (250)
..+++++.+++.++|++||++ ++|..+ ....+++++++++|+++.+.|+++++..++|..|.+.++. .++++|.
T Consensus 66 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~----~~~~~P~ 141 (802)
T 4hg6_A 66 RFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL----QPEELPT 141 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC----CTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC----CccCCCc
Confidence 334455555556799999999 777543 4456789999999999999999999999999999887653 1467999
Q ss_pred ccEEEeCCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchhhHH----HHHH-HHHHHHHhHhHHHhcCccc
Q 025630 99 VDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFY----ALIE-ASHFAEHWIPYCKKFYVEP 171 (250)
Q Consensus 99 VDVFI~Tynp~~EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~t~~----al~e-aa~Fa~~wvpfC~k~~V~~ 171 (250)
|+|+||||| |++.++.+|+.|+++.|||.+++.|+|+|||+++-|++ ++.+ +.+-......+|+++++..
T Consensus 142 VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~~ 216 (802)
T 4hg6_A 142 VDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVY 216 (802)
T ss_dssp EEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred EEEEEEECC---CCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcEE
Confidence 999999999 99999999999999999999999999999999999974 2333 2222344557899998873
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=97.75 E-value=3.9e-05 Score=71.70 Aligned_cols=58 Identities=22% Similarity=0.221 Sum_probs=50.1
Q ss_pred ccCCCCcccEEEeCCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchh-hHHHHHH
Q 025630 92 YENDLPGVDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDI-TFYALIE 152 (250)
Q Consensus 92 ~~~~lP~VDVFI~Tynp~~EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~-t~~al~e 152 (250)
+.+.+|.|.|.||||| |+...+.+||.|+++..||.....|.|.|||+++- |...+.+
T Consensus 24 ~~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~ 82 (472)
T 1xhb_A 24 YPDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLES 82 (472)
T ss_dssp CCSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHH
T ss_pred CCcCCCCeEEEEEeCC---CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHH
Confidence 4567999999999999 99889999999999999996667999999999984 6665554
No 3
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=97.68 E-value=4.7e-05 Score=63.48 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=45.9
Q ss_pred CCCcccEEEeCCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchhhHHHHHH
Q 025630 95 DLPGVDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 152 (250)
Q Consensus 95 ~lP~VDVFI~Tynp~~EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~t~~al~e 152 (250)
..|.|.|.||||| ++ ..+.+++.|+++..|| .+.|+|.|||+++-|...+.+
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~ 54 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDD 54 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHH
T ss_pred CCCcEEEEEecCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCHHHHHHH
Confidence 3688999999999 77 7899999999999998 689999999999988766555
No 4
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=97.66 E-value=4.5e-05 Score=72.15 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=47.7
Q ss_pred ccCCCCcccEEEeCCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchhhHH
Q 025630 92 YENDLPGVDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFY 148 (250)
Q Consensus 92 ~~~~lP~VDVFI~Tynp~~EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~t~~ 148 (250)
+.+.+|.|.|.||||| |+...+.+||.|+++..||.....|.|.|||+++-|..
T Consensus 61 ~~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~ 114 (501)
T 2ffu_A 61 WRVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDG 114 (501)
T ss_dssp CCSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHH
T ss_pred CCcCCCCEEEEEEeCc---CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHH
Confidence 3567999999999999 99779999999999999996557999999999998753
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=97.64 E-value=6e-05 Score=73.16 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=49.4
Q ss_pred ccCCCCcccEEEeCCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchhh-HHHHHH
Q 025630 92 YENDLPGVDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDIT-FYALIE 152 (250)
Q Consensus 92 ~~~~lP~VDVFI~Tynp~~EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~t-~~al~e 152 (250)
+.+.+|.|.|.||||| |+...+.+||.|+++..||...+.|.|.|||+++-| ...+.+
T Consensus 107 ~~~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~ 165 (570)
T 2d7i_A 107 YLETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLED 165 (570)
T ss_dssp EESSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHH
T ss_pred cCCCCCCeEEEEEECC---CCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHH
Confidence 3467999999999999 988899999999999999955569999999999988 444433
No 6
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=97.62 E-value=4.1e-05 Score=64.58 Aligned_cols=49 Identities=14% Similarity=0.405 Sum_probs=43.3
Q ss_pred CcccEEEeCCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchhhHHHHH
Q 025630 97 PGVDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALI 151 (250)
Q Consensus 97 P~VDVFI~Tynp~~EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~t~~al~ 151 (250)
|.|.|.||||| ++ ..+.+|+.|+++..|| .+.|+|.|||+++-|...+.
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~ 49 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIR 49 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHG
T ss_pred CeEEEEEEcCC---CH-HHHHHHHHHHHhccCC--ceEEEEEECCCCchHHHHHH
Confidence 78999999999 77 7899999999999999 78999999999987765443
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=97.59 E-value=4.4e-05 Score=73.75 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=44.4
Q ss_pred CCCcccEEEeCCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchhhHHHH
Q 025630 95 DLPGVDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYAL 150 (250)
Q Consensus 95 ~lP~VDVFI~Tynp~~EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~t~~al 150 (250)
..|.|+|+||||| |+ ..+.+|+.|+++.+||. .+.|+|+|||+++-|...+
T Consensus 91 ~~p~vsviIp~~n---~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~ 141 (625)
T 2z86_A 91 IIDGLSIVIPTYN---RA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIV 141 (625)
T ss_dssp CCCCEEEEEEESS---CH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHH
T ss_pred cCCcEEEEEecCC---cH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHH
Confidence 4699999999999 86 78999999999999885 7999999999998765433
No 8
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=97.16 E-value=0.00032 Score=62.95 Aligned_cols=54 Identities=11% Similarity=-0.002 Sum_probs=46.0
Q ss_pred CCCCcccEEEeCCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchhhHHHHHH
Q 025630 94 NDLPGVDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 152 (250)
Q Consensus 94 ~~lP~VDVFI~Tynp~~EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~t~~al~e 152 (250)
..-|.|.|.||||| |. ..+..++.|+++..|| ....|+|.|||+++-|...+.+
T Consensus 45 ~~~~~vSViIp~yN---~~-~~l~~~l~sl~~q~~~-~~~eiivVDdgS~D~t~~~~~~ 98 (329)
T 3ckj_A 45 KAGRTISVVLPALD---EE-DTIGSVIDSISPLVDG-LVDELIVLDSGSTDDTEIRAVA 98 (329)
T ss_dssp TTTCCEEEEEEESS---CT-TTHHHHHHHHGGGBTT-TBSEEEEEECSCCSSHHHHHHH
T ss_pred ccCCcEEEEEeeCC---CH-HHHHHHHHHHHHhhCC-CCcEEEEEeCCCCchHHHHHHH
Confidence 34699999999999 77 5689999999999998 4578999999999988765544
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=96.60 E-value=0.0015 Score=62.98 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=45.7
Q ss_pred CCCcccEEEeCCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchhhHHHHHH
Q 025630 95 DLPGVDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 152 (250)
Q Consensus 95 ~lP~VDVFI~Tynp~~EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~t~~al~e 152 (250)
..|.|.|.||||| ++ ..+.+|+.|+++.+|| .+.|+|.|||+++-|...+.+
T Consensus 373 ~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~~ 424 (625)
T 2z86_A 373 RVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQE 424 (625)
T ss_dssp SSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHHH
T ss_pred cCCeEEEEEeCCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECcCChhHHHHHHH
Confidence 3689999999999 75 7889999999999998 688999999999988776655
No 10
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=96.48 E-value=0.0015 Score=60.95 Aligned_cols=54 Identities=13% Similarity=-0.047 Sum_probs=43.0
Q ss_pred CCCCcccEEEeCCCCCCCChHHHHHHHHHHhcC--CCCCCCcEEEEcCCCCchhhHHHHHH
Q 025630 94 NDLPGVDIFVCTADPKTEQPIMVINTVLSVMAY--DYPTEKLSVYLSDDAAHDITFYALIE 152 (250)
Q Consensus 94 ~~lP~VDVFI~Tynp~~EP~~vv~~TVls~lal--DYP~~kl~VYv~DDG~s~~t~~al~e 152 (250)
...|.|.|.||||| |. ..+..+|.++.++ +||. ...|+|.|||+++-|...+.+
T Consensus 91 ~~~p~vSVVIP~yN---e~-~~l~~~l~sl~~~l~~~~~-~~EIIVVDDgStD~T~~i~~~ 146 (387)
T 3f1y_A 91 ELGLTVSAVLPSRN---VA-DTVGGIIDEIHALNERAPL-IDQILVVDADSEDGTAGVAAS 146 (387)
T ss_dssp HHTCCEEEEEEESS---CT-TTHHHHHHHHHHHHHHSCC-CSEEEEEECSCSSSHHHHHHH
T ss_pred cCCCeEEEEEEcCC---CH-HHHHHHHHHHHHHHhcCCC-CeEEEEEcCcCCccHHHHHHH
Confidence 34799999999999 86 5678888888763 6763 368999999999988775554
No 11
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=96.10 E-value=0.00093 Score=66.30 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=0.0
Q ss_pred CcccEEEeCCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchhhHHHHHHH
Q 025630 97 PGVDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEA 153 (250)
Q Consensus 97 P~VDVFI~Tynp~~EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~t~~al~ea 153 (250)
|.|.|.||||| ++ ..+.+||.|+++.+|| .+.|.|.|||+++-|.+.+.+.
T Consensus 2 p~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~~ 52 (729)
T 3l7i_A 2 NKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDEA 52 (729)
T ss_dssp ---------------------------------------------------------
T ss_pred ceEEEEEEcCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCCcHHHHHHHH
Confidence 78999999999 76 7889999999999999 7889999999999887766553
No 12
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=95.09 E-value=0.0063 Score=60.52 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=39.9
Q ss_pred CCCcccEEEeCCCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEcCCCCch
Q 025630 95 DLPGVDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKL-SVYLSDDAAHD 144 (250)
Q Consensus 95 ~lP~VDVFI~Tynp~~EP~~vv~~TVls~lalDYP~~kl-~VYv~DDG~s~ 144 (250)
.-|.|.|.||||| ++ ..+.+++.|+++..|+.++. .|+|.|||+++
T Consensus 178 ~~pkVSVVIptYN---~~-~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD 224 (657)
T 4fix_A 178 GTANIAVGIPTFN---RP-ADCVNALRELTADPLVDQVIGAVIVPDQGERK 224 (657)
T ss_dssp SCCCEEEECCBSS---CH-HHHHHHHHHHTTSHHHHTTEEEEEEEECSSSC
T ss_pred CCCeEEEEEEecC---CH-HHHHHHHHHHHcCccccCCCCEEEEEECcCCC
Confidence 3588999999999 76 68999999999999866555 89999999986
No 13
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=93.89 E-value=0.046 Score=50.43 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=40.3
Q ss_pred CCcccEEEeCCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchhhHH
Q 025630 96 LPGVDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFY 148 (250)
Q Consensus 96 lP~VDVFI~Tynp~~EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~t~~ 148 (250)
++.+-|.|.||| -| + +.+++-|++....+.++.-|+|+|||....|..
T Consensus 1 ~~~~pViI~~yN---Rp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~ 48 (343)
T 1fo8_A 1 LAVIPILVIACD---RS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQ 48 (343)
T ss_dssp CCCCCEEEEESS---CT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHH
T ss_pred CCcccEEEEECC---cH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHH
Confidence 456789999999 88 6 999999999999777788899999998755443
No 14
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=89.97 E-value=0.35 Score=45.23 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=31.4
Q ss_pred EEEeCCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchhhHHHHHHHH
Q 025630 101 IFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEAS 154 (250)
Q Consensus 101 VFI~Tynp~~EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~t~~al~eaa 154 (250)
|.||++| |-..-+...+..+.. +| ...|.|.|||+++-|.+.+.+.+
T Consensus 4 VIiP~~e---E~I~~vl~~l~~~~~--~~--~~EIIVVDDGStD~T~eia~~la 50 (397)
T 2bo4_A 4 VVFPFKH---EHPEVLLHNVRVAAA--HP--RVHEVLCIGYERDQTYEAVERAA 50 (397)
T ss_dssp EEEECCS---SCHHHHHHHHHHHHH--ST--TCCEEEEEESSCCHHHHHHHHHH
T ss_pred EEEeCCc---cCHHHHHHHHHHhcc--CC--CeEEEEEECcCCccHHHHHHHhh
Confidence 5677776 654444444443332 45 45799999999999999777543
No 15
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=89.08 E-value=0.2 Score=44.66 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=34.4
Q ss_pred CCcccEEEeCCCCCCCChHHHHHHHHHHh---cCCCCCCCcEEEEcCCCC
Q 025630 96 LPGVDIFVCTADPKTEQPIMVINTVLSVM---AYDYPTEKLSVYLSDDAA 142 (250)
Q Consensus 96 lP~VDVFI~Tynp~~EP~~vv~~TVls~l---alDYP~~kl~VYv~DDG~ 142 (250)
.|.|-|.||||| ++ ..+..++.|++ ...|+ .+.|+|.||+.
T Consensus 64 ~~~VSIIIP~yN---~~-~~L~~~L~sl~~~l~q~~~--~~EIiVVdds~ 107 (287)
T 2fy7_A 64 PHKVAIIIPFRN---RQ-EHLKYWLYYLHPVLQRQQL--DYGIYVINQAG 107 (287)
T ss_dssp SCEEEEEEEESS---CH-HHHHHHHHHHHHHHHHTTC--EEEEEEEEECS
T ss_pred CCcEEEEEeeCC---CH-HHHHHHHHHHHHHHHHhcC--CceEEEEEeCC
Confidence 588999999999 76 67889998888 56777 68899999853
No 16
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=87.26 E-value=0.73 Score=43.44 Aligned_cols=41 Identities=10% Similarity=0.220 Sum_probs=29.8
Q ss_pred CcccEEEeCCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchhh
Q 025630 97 PGVDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDIT 146 (250)
Q Consensus 97 P~VDVFI~Tynp~~EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~t 146 (250)
..|-|.||+|| |-..+ ..++++.+..+| .|.|.|||+++-|
T Consensus 51 ~~iSVVIP~yN---EE~~l-I~~vL~~i~~~~-----eIIvVDDgSrD~t 91 (394)
T 2zu9_A 51 GKMAVIVPMKN---EKLHL-VDGVLKAIPHKC-----PIIIVSNSKREGP 91 (394)
T ss_dssp TTEEEEEEESS---CCHHH-HHHHHHHSCTTS-----CEEEEECCCCSSS
T ss_pred CCEEEEEecCc---ccHHH-HHHHHHcCCCCc-----EEEEEECcCcccc
Confidence 57999999999 98543 555666554343 4999999996654
No 17
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=83.28 E-value=1.1 Score=37.97 Aligned_cols=43 Identities=7% Similarity=-0.066 Sum_probs=32.0
Q ss_pred CCcccEEEeCCCCCCCChHHHHHHHHHHh-cCCCCCCCcEEEEcCCCCch
Q 025630 96 LPGVDIFVCTADPKTEQPIMVINTVLSVM-AYDYPTEKLSVYLSDDAAHD 144 (250)
Q Consensus 96 lP~VDVFI~Tynp~~EP~~vv~~TVls~l-alDYP~~kl~VYv~DDG~s~ 144 (250)
-|.|-| ||+|| + ...+.+++.|+. ++..+.. ..|.|.|+|+++
T Consensus 15 ~~~iSI-I~~yN---~-~~~l~~~l~sl~~sl~~q~~-~EiIVVDn~s~d 58 (249)
T 2nxv_A 15 TLMFSV-CSLVR---D-QAKYDRLLESFERFGFTPDK-AEFLAADNREGN 58 (249)
T ss_dssp CCSEEE-EEEES---C-HHHHHHHHHHHHHTTCCTTT-EEEEEEECTTSC
T ss_pred cceEEE-EEeeC---C-HHHHHHHHHHHHHhccCCCc-EEEEEEECCCCC
Confidence 456776 68899 6 578999999776 3444433 889999999876
No 18
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=78.40 E-value=2.9 Score=39.37 Aligned_cols=44 Identities=16% Similarity=0.056 Sum_probs=32.8
Q ss_pred CCCcccEEEeCCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchhhH
Q 025630 95 DLPGVDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITF 147 (250)
Q Consensus 95 ~lP~VDVFI~Tynp~~EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~t~ 147 (250)
.+..+-|.||+|| |..- ++-++++--|. ...|.|.|||+.+-+.
T Consensus 51 i~~klSIVVPvYN---Ee~~----lLesVl~qi~~--d~eIIlVdDGS~D~s~ 94 (391)
T 2wvl_A 51 VLEQTAIVVPTRN---ERLK----LLEGVLSGIPH--EALILVASNSSPDRFQ 94 (391)
T ss_dssp HHTTEEEEEEESS---CCHH----HHHHHHHTSCT--TSEEEEEECCCHHHHH
T ss_pred HHhceEEEEeccC---cHHH----HHHHHHhcCCC--CceEEEEECCCCCChH
Confidence 4667899999999 9863 45555555444 5679999999987774
No 19
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.60 E-value=64 Score=21.65 Aligned_cols=23 Identities=4% Similarity=0.026 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 025630 190 AKGFLAIKKLYEDMENGIITAAK 212 (250)
Q Consensus 190 ~~e~~~~k~~Ye~~k~ri~~~~~ 212 (250)
..|.+.+|.+.+++|.|++.+.+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVE 40 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888899988887764
No 20
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=26.01 E-value=1.2e+02 Score=22.36 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchhhHHHHHHHHHH-HHHhHhHHHhcCccc
Q 025630 111 EQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHF-AEHWIPYCKKFYVEP 171 (250)
Q Consensus 111 EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~t~~al~eaa~F-a~~wvpfC~k~~V~~ 171 (250)
+....+...++.+. ..|| ..+.++|-|+. | .+.+.-+|+++||..
T Consensus 43 ~~~~~~~~~~~~~~-~~~~---~~~i~sDnG~~------------f~s~~~~~~~~~~gi~~ 88 (164)
T 1c6v_A 43 ETGRQTALFLLKLA-GRWP---ITHLHTDNGAN------------FASQEVKMVAWWAGIEH 88 (164)
T ss_dssp CSHHHHHHHHHHHH-TTSC---CCEEECCCCSS------------TTSSHHHHHHHHHTCEE
T ss_pred CchHHHHHHHHHHH-HhcC---CCEEEeCCchh------------hhhHHHHHHHHHcCCeE
Confidence 55555666666533 4566 36899999875 5 456778999999884
No 21
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=21.56 E-value=1.5e+02 Score=23.04 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEcCCCCchhhHHHHHHHHHH-HHHhHhHHHhcCccc
Q 025630 111 EQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHF-AEHWIPYCKKFYVEP 171 (250)
Q Consensus 111 EP~~vv~~TVls~lalDYP~~kl~VYv~DDG~s~~t~~al~eaa~F-a~~wvpfC~k~~V~~ 171 (250)
.....+...+..+.....| .+..+|-|.. | .+.|.-||+++||..
T Consensus 52 ~~~~~~~~~l~~~~~~g~p----~~i~sDnG~~------------f~s~~~~~~~~~~gi~~ 97 (200)
T 2x78_A 52 PSTSATVKSLNVLTSIAIP----RVIHSDQGAA------------FTSSTFAEWAKERGIHL 97 (200)
T ss_dssp SCHHHHHHHHHHHTTTCCC----SEEEECSCHH------------HHSHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHHHHhCCC----cEEEecCCcc------------eehHHHHHHHHHcCceE
Confidence 4455566777666655444 3788888753 6 356788999999984
Done!