BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025631
         (250 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8F0B3|DCUP_RICCK Uroporphyrinogen decarboxylase OS=Rickettsia canadensis (strain
           McKiel) GN=hemE PE=3 SV=1
          Length = 339

 Score = 32.7 bits (73), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 15/93 (16%)

Query: 35  SKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVY---DFREMYVTP 91
           SK FVY     S+ ++++ ID+  +H I+ +E    I K  D  + V    +F E  + P
Sbjct: 159 SKKFVYENKALSKELLNFLIDKTTYHLINQVESGANILKLFDSCSGVLAEEEFTEFVIEP 218

Query: 92  ------------PDTDIYAIPKVLAPMPQKYIR 112
                       P T I A PK    + +K+I+
Sbjct: 219 TKKIILKVKEVLPKTPIIAFPKGAGLLYEKFIK 251


>sp|O82140|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1
          Length = 763

 Score = 32.7 bits (73), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 41  TQGWDSETVVDYRIDEDEFHKI--SLMECDFFIRKPPDPDNDVYDFREMY 88
           +Q WD+   +   +D D  H+I  +LM+   FI+K    DN   DF+ MY
Sbjct: 416 SQEWDTGFSIQALLDSDLTHEIGPTLMKGHDFIKKSQVKDNPSGDFKSMY 465


>sp|Q92179|CHST3_CHICK Carbohydrate sulfotransferase 3 OS=Gallus gallus GN=CHST3 PE=1 SV=1
          Length = 458

 Score = 31.6 bits (70), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 94  TDIYAIPKVLAPMPQKYIRCAVSDYG-CYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYR 152
            D+Y +   ++P P++++  A+   G  +++ E P+  P          + KVF   H +
Sbjct: 178 CDLYILESFISPAPEEHLTAALFRRGSSHSLCEEPVCTP---------SLKKVFEKYHCK 228

Query: 153 NRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTL-PRNRDRKSDLLIVR 201
           NRR G     L  E             R + L  L P   D + DL I++
Sbjct: 229 NRRCGPLNITLAAEACRRKQHMALKTVRIRQLEFLQPLAEDPRLDLRIIQ 278


>sp|P56945|BCAR1_HUMAN Breast cancer anti-estrogen resistance protein 1 OS=Homo sapiens
           GN=BCAR1 PE=1 SV=2
          Length = 870

 Score = 30.8 bits (68), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 70  FIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKY 110
           ++ +   P+ D YD     + P   DIY +P V   +P +Y
Sbjct: 222 YVYEAAQPEQDEYDIPRHLLAPGPQDIYDVPPVRGLLPSQY 262


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.138    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,430,785
Number of Sequences: 539616
Number of extensions: 4745858
Number of successful extensions: 10610
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 10604
Number of HSP's gapped (non-prelim): 20
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)