BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025634
         (250 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
           Stenotrophomonas Maltophilia
          Length = 741

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 30  SKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTKVTSSTNESK 87
           S    ++     K + S++C  G AG PV  W    S +  R  D P +  +   E++
Sbjct: 610 SNGGYMTLMLLAKASDSYAC--GVAGAPVTDWGLYDSHYTERYMDLPARNDAGYREAR 665


>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
           C2a-c2b
 pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
           C2a-c2b
          Length = 284

 Score = 28.5 bits (62), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 23/82 (28%)

Query: 130 AWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVKNAVRE------------RSVP 177
           A YD D F  H  +  GE +V +  V FG   +EW ++++A +E            R VP
Sbjct: 90  AVYDFDRFSKHDII--GEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVP 147

Query: 178 ---------LEPSDCHKLKVGG 190
                    LE  +  K+ VGG
Sbjct: 148 TAGKLTVVILEAKNLKKMDVGG 169


>pdb|1WGS|A Chain A, Solution Structure Of The Tudor Domain From Mouse
           Hypothetical Protein Homologous To Histone
           Acetyltransferase
          Length = 133

 Score = 27.7 bits (60), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 13/82 (15%)

Query: 103 GSSQEPRGEKVPDVSEMEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADED 162
           GSS EP  E   ++ E     R   D  W+  ++  +      G  E  V +VGF    D
Sbjct: 4   GSSGEP--EVTVEIGETYLCRRP--DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLD 59

Query: 163 EWVN---------VKNAVRERS 175
           EWV+         VK+AV++ S
Sbjct: 60  EWVDKNRLALTKTVKDAVQKNS 81


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,951,891
Number of Sequences: 62578
Number of extensions: 270211
Number of successful extensions: 540
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 12
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)