BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025634
         (250 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P45968|YNZ8_CAEEL Chromo domain-containing protein T09A5.8 OS=Caenorhabditis elegans
           GN=T09A5.8 PE=4 SV=1
          Length = 339

 Score = 39.7 bits (91), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 120 EFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEW 164
           E EAR  K    ++V+  LAH+  D     ++VR++G+GADED W
Sbjct: 12  EPEAREGKSDEIFEVEKILAHKVTDNLLV-LQVRWLGYGADEDTW 55


>sp|Q3AUA7|ATPA_CHLCH ATP synthase subunit alpha OS=Chlorobium chlorochromatii (strain
           CaD3) GN=atpA PE=3 SV=1
          Length = 526

 Score = 35.0 bits (79), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 67  WFQSRQQDRPTKVTSSTNESKKGSDLPDACPPIKEHGSS 105
           +  SR  +R  K+T     +KK +DLPDA  P+ + G S
Sbjct: 294 YLHSRLLERAAKITDDVEVAKKMNDLPDALKPLVKGGGS 332


>sp|Q3B1F4|ATPA2_PELLD ATP synthase subunit alpha 2 OS=Pelodictyon luteolum (strain DSM
           273) GN=atpA2 PE=3 SV=1
          Length = 526

 Score = 33.9 bits (76), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 67  WFQSRQQDRPTKVTSSTNESKKGSDLPDACPPIKEHGSS 105
           +  SR  +R  K+T     +KK +DLPDA  P+ + G S
Sbjct: 294 FLHSRLLERAAKITDDIEVAKKMNDLPDALRPMVQGGGS 332


>sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Meyerozyma
          guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
          JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PRP5 PE=3 SV=2
          Length = 862

 Score = 33.5 bits (75), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 30 SKDDLLSKE------FCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTKVTSST 83
          S+DD L K       + QK A S         KP ++ +++Q W + RQQ   T    ST
Sbjct: 18 SQDDKLQKRRARLAAWNQKKASSEKSENNEDKKPKIESSKLQEWIKRRQQKSATPEVPST 77

Query: 84 NESKKGSDLPDACPPI 99
            S+K    P +  PI
Sbjct: 78 EASQK----PTSIKPI 89


>sp|B3EHU6|ATPA_CHLL2 ATP synthase subunit alpha OS=Chlorobium limicola (strain DSM 245 /
           NBRC 103803) GN=atpA PE=3 SV=1
          Length = 526

 Score = 33.5 bits (75), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 67  WFQSRQQDRPTKVTSSTNESKKGSDLPDACPPIKEHGSS 105
           +  SR  +R  K+T     ++K +DLPDA  P+ + G S
Sbjct: 294 YLHSRLLERAAKITDDIEVARKMNDLPDALKPLVKGGGS 332


>sp|Q8CG79|ASPP2_MOUSE Apoptosis-stimulating of p53 protein 2 OS=Mus musculus GN=Tp53bp2
           PE=1 SV=3
          Length = 1128

 Score = 32.3 bits (72), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 17/132 (12%)

Query: 8   QRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKS-FSCSAGRAGKPVVKWTEVQS 66
           Q++V +  TKT+        +  K  + + +  Q+  ++ +SCS G+ G P  +   V S
Sbjct: 623 QQAVQSALTKTQPRGPHFSSVYGKPVIAAAQNPQQHPENIYSCSQGKPGSPEPETETVSS 682

Query: 67  WFQSRQQDR------PTKVTS-STNESKKGSD---------LPDACPPIKEHGSSQEPRG 110
             +S + +R      PTK+    +N  +  SD         L +A  P+K+  S  EP G
Sbjct: 683 VHESHENERIPRPLSPTKLLPFLSNPYRNQSDADLEALRKKLSNAPRPLKKRSSITEPEG 742

Query: 111 EKVPDVSEMEFE 122
              P++ ++ ++
Sbjct: 743 PNGPNIQKLLYQ 754


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,592,172
Number of Sequences: 539616
Number of extensions: 3927197
Number of successful extensions: 9981
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9974
Number of HSP's gapped (non-prelim): 15
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)