Query 025634
Match_columns 250
No_of_seqs 156 out of 211
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 14:20:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh5_A ZF-HD homeobox family p 99.7 3.4E-18 1.2E-22 128.6 8.2 62 6-77 15-78 (80)
2 2cra_A Homeobox protein HOX-B1 99.7 3.8E-18 1.3E-22 124.0 8.1 61 7-79 6-66 (70)
3 2djn_A Homeobox protein DLX-5; 99.7 4.2E-18 1.4E-22 123.8 7.6 63 6-80 5-67 (70)
4 2dmt_A Homeobox protein BARH-l 99.7 3.9E-18 1.3E-22 127.0 7.0 61 7-79 16-76 (80)
5 2cuf_A FLJ21616 protein; homeo 99.7 3.6E-18 1.2E-22 131.1 6.8 71 6-78 5-80 (95)
6 2vi6_A Homeobox protein nanog; 99.7 3.2E-18 1.1E-22 121.6 6.1 58 7-76 2-59 (62)
7 2da2_A Alpha-fetoprotein enhan 99.7 7.9E-18 2.7E-22 121.9 7.0 60 7-78 6-65 (70)
8 2dmu_A Homeobox protein goosec 99.7 4.6E-18 1.6E-22 123.4 5.6 60 7-78 6-65 (70)
9 2l7z_A Homeobox protein HOX-A1 99.7 1.6E-17 5.4E-22 122.0 7.9 60 7-78 6-65 (73)
10 2h1k_A IPF-1, pancreatic and d 99.7 6.6E-18 2.2E-22 120.5 5.6 57 8-76 3-59 (63)
11 2kt0_A Nanog, homeobox protein 99.7 1.9E-17 6.3E-22 123.8 8.1 60 6-77 20-79 (84)
12 1bw5_A ISL-1HD, insulin gene e 99.7 1.3E-17 4.3E-22 119.8 6.9 58 8-77 3-60 (66)
13 2hdd_A Protein (engrailed home 99.7 6.5E-18 2.2E-22 119.6 5.3 57 8-76 3-59 (61)
14 2da3_A Alpha-fetoprotein enhan 99.7 4.6E-18 1.6E-22 125.6 4.6 61 7-79 16-76 (80)
15 1ig7_A Homeotic protein MSX-1; 99.7 1.1E-17 3.7E-22 117.0 6.3 56 9-76 1-56 (58)
16 1akh_A Protein (mating-type pr 99.7 1.2E-17 4E-22 117.9 5.7 57 7-75 4-60 (61)
17 2dms_A Homeobox protein OTX2; 99.7 2.3E-17 7.8E-22 122.7 7.5 59 7-77 6-64 (80)
18 3rkq_A Homeobox protein NKX-2. 99.7 1.2E-17 4.1E-22 115.9 5.5 55 9-75 3-57 (58)
19 2e1o_A Homeobox protein PRH; D 99.7 9.5E-18 3.3E-22 121.9 5.1 59 6-76 5-63 (70)
20 1wh7_A ZF-HD homeobox family p 99.7 2.1E-17 7.1E-22 124.8 7.1 61 6-77 15-78 (80)
21 2da1_A Alpha-fetoprotein enhan 99.7 1.1E-17 3.8E-22 121.1 5.3 59 7-77 6-64 (70)
22 1nk2_P Homeobox protein VND; h 99.7 2.8E-17 9.6E-22 121.6 7.1 61 4-76 5-65 (77)
23 1jgg_A Segmentation protein EV 99.7 2.4E-17 8.1E-22 116.4 6.1 56 9-76 2-57 (60)
24 2ly9_A Zinc fingers and homeob 99.7 6.5E-17 2.2E-21 118.2 8.3 60 7-78 5-64 (74)
25 2cue_A Paired box protein PAX6 99.7 2.4E-17 8.3E-22 122.7 5.7 59 6-76 5-63 (80)
26 1ahd_P Antennapedia protein mu 99.7 1.8E-17 6.1E-22 120.2 4.7 56 9-76 3-58 (68)
27 1zq3_P PRD-4, homeotic bicoid 99.7 3.3E-17 1.1E-21 118.6 6.0 57 8-76 2-58 (68)
28 1puf_A HOX-1.7, homeobox prote 99.7 3.2E-17 1.1E-21 121.3 6.1 58 7-76 12-69 (77)
29 1yz8_P Pituitary homeobox 2; D 99.7 1E-17 3.4E-22 121.2 3.0 58 7-76 2-59 (68)
30 2dmq_A LIM/homeobox protein LH 99.7 3.8E-17 1.3E-21 121.1 6.2 59 7-77 6-64 (80)
31 2da4_A Hypothetical protein DK 99.7 1.1E-17 3.7E-22 124.5 3.1 58 7-76 7-68 (80)
32 1ftt_A TTF-1 HD, thyroid trans 99.7 3.6E-17 1.2E-21 118.5 5.7 56 9-76 3-58 (68)
33 2k40_A Homeobox expressed in E 99.7 3.8E-17 1.3E-21 117.6 5.5 58 9-78 2-59 (67)
34 1fjl_A Paired protein; DNA-bin 99.7 4.9E-17 1.7E-21 121.1 6.0 59 6-76 16-74 (81)
35 2m0c_A Homeobox protein arista 99.7 6.8E-17 2.3E-21 117.8 6.6 61 6-78 7-67 (75)
36 3a02_A Homeobox protein arista 99.7 4E-17 1.4E-21 115.2 5.2 54 11-76 2-55 (60)
37 3a01_A Homeodomain-containing 99.7 5.7E-17 2E-21 124.5 6.3 60 6-77 15-74 (93)
38 2dn0_A Zinc fingers and homeob 99.7 9.9E-17 3.4E-21 118.4 7.3 58 10-79 10-67 (76)
39 2r5y_A Homeotic protein sex co 99.7 3.8E-17 1.3E-21 123.6 4.6 58 7-76 27-84 (88)
40 2hi3_A Homeodomain-only protei 99.7 5.3E-17 1.8E-21 119.0 5.2 56 9-76 3-59 (73)
41 1b8i_A Ultrabithorax, protein 99.7 6.1E-17 2.1E-21 121.2 5.3 58 7-76 19-76 (81)
42 2ecb_A Zinc fingers and homeob 99.7 2.1E-16 7.3E-21 122.1 8.1 57 11-79 14-70 (89)
43 1uhs_A HOP, homeodomain only p 99.6 9.9E-17 3.4E-21 117.1 5.0 56 10-76 3-58 (72)
44 3a03_A T-cell leukemia homeobo 99.6 1.1E-16 3.6E-21 112.0 5.0 52 13-76 2-53 (56)
45 1b72_A Protein (homeobox prote 99.6 1E-16 3.6E-21 123.4 4.9 57 8-76 34-90 (97)
46 2da5_A Zinc fingers and homeob 99.6 2.6E-16 8.8E-21 116.2 6.4 56 10-77 9-64 (75)
47 2ecc_A Homeobox and leucine zi 99.6 1.9E-16 6.4E-21 119.7 5.6 55 10-76 5-59 (76)
48 1du6_A PBX1, homeobox protein 99.6 2.6E-16 9E-21 112.1 6.0 59 8-76 3-62 (64)
49 3nar_A ZHX1, zinc fingers and 99.6 2.8E-16 9.5E-21 121.0 6.0 59 7-77 24-82 (96)
50 1x2n_A Homeobox protein pknox1 99.6 6.4E-16 2.2E-20 112.9 6.4 61 6-76 5-66 (73)
51 1puf_B PRE-B-cell leukemia tra 99.6 3.9E-16 1.3E-20 114.0 5.3 58 9-76 2-60 (73)
52 2cqx_A LAG1 longevity assuranc 99.6 2E-16 6.8E-21 116.8 3.3 58 9-78 9-67 (72)
53 1lfb_A Liver transcription fac 99.6 9.2E-16 3.1E-20 120.3 5.9 71 6-78 7-88 (99)
54 1mnm_C Protein (MAT alpha-2 tr 99.6 1.1E-15 3.6E-20 115.5 6.0 59 8-76 27-86 (87)
55 1b72_B Protein (PBX1); homeodo 99.6 7.2E-16 2.5E-20 115.8 5.0 60 9-78 2-62 (87)
56 1au7_A Protein PIT-1, GHF-1; c 99.6 1.2E-15 4.1E-20 125.8 6.7 59 7-77 86-144 (146)
57 1k61_A Mating-type protein alp 99.6 1.2E-15 4E-20 107.5 5.5 55 12-76 2-57 (60)
58 2dmp_A Zinc fingers and homeob 99.6 2.4E-15 8.1E-20 114.8 7.4 56 11-78 16-71 (89)
59 1e3o_C Octamer-binding transcr 99.6 1E-15 3.4E-20 127.7 5.8 59 6-76 99-157 (160)
60 1x2m_A LAG1 longevity assuranc 99.6 1.4E-15 4.8E-20 111.5 5.4 54 17-81 9-62 (64)
61 2dmn_A Homeobox protein TGIF2L 99.6 3E-15 1E-19 112.8 7.1 60 7-76 6-66 (83)
62 2l9r_A Homeobox protein NKX-3. 99.6 5.5E-15 1.9E-19 109.1 8.1 57 11-79 7-63 (69)
63 2xsd_C POU domain, class 3, tr 99.6 1.4E-15 4.7E-20 127.9 5.5 61 6-78 97-157 (164)
64 2d5v_A Hepatocyte nuclear fact 99.6 2.4E-15 8.2E-20 124.9 6.8 61 7-79 96-156 (164)
65 2da6_A Hepatocyte nuclear fact 99.6 2.1E-15 7.2E-20 119.7 5.7 69 6-76 4-83 (102)
66 3d1n_I POU domain, class 6, tr 99.6 2.4E-15 8.2E-20 124.0 6.2 59 6-76 91-149 (151)
67 3nau_A Zinc fingers and homeob 99.6 1.6E-15 5.4E-20 112.3 4.2 50 15-76 11-60 (66)
68 2e19_A Transcription factor 8; 99.6 5.3E-15 1.8E-19 107.1 6.9 54 11-76 6-59 (64)
69 1le8_B Mating-type protein alp 99.6 2.7E-15 9.1E-20 112.7 5.5 57 11-77 5-62 (83)
70 1wi3_A DNA-binding protein SAT 99.6 7.1E-15 2.4E-19 110.2 7.2 59 7-76 6-64 (71)
71 3l1p_A POU domain, class 5, tr 99.5 9.5E-15 3.2E-19 121.4 4.4 59 6-76 94-152 (155)
72 1ic8_A Hepatocyte nuclear fact 99.4 5E-14 1.7E-18 122.1 3.0 68 7-76 114-192 (194)
73 3k2a_A Homeobox protein MEIS2; 99.4 3.3E-13 1.1E-17 98.0 5.3 53 14-76 4-57 (67)
74 2h8r_A Hepatocyte nuclear fact 99.3 7.1E-13 2.4E-17 117.5 6.3 68 6-75 140-218 (221)
75 1mh3_A Maltose binding-A1 home 99.3 4.1E-12 1.4E-16 113.8 6.3 55 10-76 367-421 (421)
76 2lk2_A Homeobox protein TGIF1; 99.1 9.5E-11 3.2E-15 91.0 4.8 55 12-76 9-64 (89)
77 2da7_A Zinc finger homeobox pr 99.0 1.5E-10 5.1E-15 86.9 4.5 47 17-75 14-60 (71)
78 2nzz_A Penetratin conjugated G 98.0 1.8E-07 6.2E-12 62.1 -2.4 18 62-79 1-18 (37)
79 3h8z_A FragIle X mental retard 97.3 0.0035 1.2E-07 51.3 11.6 106 118-244 5-114 (128)
80 3fdr_A Tudor and KH domain-con 96.4 0.0056 1.9E-07 45.9 5.9 55 123-184 36-94 (94)
81 3ask_A E3 ubiquitin-protein li 96.3 0.026 8.8E-07 50.1 10.1 92 122-216 10-109 (226)
82 2ro0_A Histone acetyltransfera 95.7 0.019 6.4E-07 44.5 5.7 43 127-172 34-76 (92)
83 2eqm_A PHD finger protein 20-l 95.6 0.053 1.8E-06 41.3 7.8 46 119-169 24-69 (88)
84 1wgs_A MYST histone acetyltran 95.4 0.041 1.4E-06 44.9 7.2 43 128-172 25-68 (133)
85 3s6w_A Tudor domain-containing 95.4 0.016 5.5E-07 39.6 4.0 37 122-162 9-45 (54)
86 4hae_A CDY-like 2, chromodomai 95.2 0.04 1.4E-06 41.4 5.8 48 118-168 13-60 (81)
87 2eko_A Histone acetyltransfera 95.0 0.021 7.3E-07 43.8 4.1 47 127-176 25-71 (87)
88 3pnw_C Tudor domain-containing 94.9 0.039 1.3E-06 40.9 5.1 49 122-179 25-73 (77)
89 2rnz_A Histone acetyltransfera 94.5 0.087 3E-06 41.0 6.5 44 126-172 35-78 (94)
90 4a4f_A SurviVal of motor neuro 94.5 0.097 3.3E-06 37.2 6.1 52 185-245 8-59 (64)
91 2lcc_A AT-rich interactive dom 94.3 0.06 2E-06 40.1 5.0 46 127-175 20-65 (76)
92 3db3_A E3 ubiquitin-protein li 94.3 0.38 1.3E-05 40.9 10.3 86 122-213 18-123 (161)
93 1mhn_A SurviVal motor neuron p 94.3 0.044 1.5E-06 38.2 3.8 40 123-168 12-51 (59)
94 2bud_A Males-absent on the fir 94.2 0.054 1.9E-06 42.2 4.6 40 127-167 26-67 (92)
95 2diq_A Tudor and KH domain-con 94.2 0.056 1.9E-06 41.6 4.7 56 123-185 41-100 (110)
96 3oa6_A MALE-specific lethal 3 94.1 0.14 4.8E-06 41.0 6.9 60 185-244 19-81 (110)
97 1g5v_A SurviVal motor neuron p 93.9 0.057 2E-06 41.3 4.2 45 122-173 18-62 (88)
98 4a4f_A SurviVal of motor neuro 93.8 0.06 2E-06 38.2 3.8 45 122-173 16-60 (64)
99 3pnw_C Tudor domain-containing 93.7 0.16 5.5E-06 37.6 6.3 63 177-248 5-71 (77)
100 1g5v_A SurviVal motor neuron p 93.7 0.11 3.8E-06 39.7 5.4 52 185-245 10-61 (88)
101 2equ_A PHD finger protein 20-l 93.6 0.13 4.6E-06 38.1 5.6 51 182-244 6-56 (74)
102 1mhn_A SurviVal motor neuron p 93.6 0.16 5.6E-06 35.3 5.8 54 185-247 3-56 (59)
103 3ntk_A Maternal protein tudor; 93.5 0.048 1.6E-06 44.9 3.4 55 123-185 56-113 (169)
104 2f5k_A MORF-related gene 15 is 93.4 0.069 2.4E-06 42.1 4.0 39 127-167 33-71 (102)
105 2rsn_A Chromo domain-containin 93.1 0.076 2.6E-06 39.3 3.6 40 129-168 19-58 (75)
106 3sd4_A PHD finger protein 20; 93.1 0.15 5.2E-06 36.7 5.0 45 119-168 17-61 (69)
107 2d9t_A Tudor domain-containing 93.0 0.093 3.2E-06 38.7 3.9 54 123-183 18-72 (78)
108 3s6w_A Tudor domain-containing 92.8 0.26 8.8E-06 33.5 5.8 50 186-244 2-51 (54)
109 1wjq_A KIAA1798 protein; MBT d 91.9 0.17 5.7E-06 40.2 4.3 45 118-167 17-61 (107)
110 3p8d_A Medulloblastoma antigen 91.6 0.3 1E-05 35.9 5.1 49 184-244 5-53 (67)
111 2ldm_A Uncharacterized protein 90.5 0.04 1.4E-06 41.9 0.0 49 184-244 5-53 (81)
112 4b9w_A TDRD1, tudor domain-con 90.5 0.32 1.1E-05 40.7 5.0 54 123-185 74-133 (201)
113 3qii_A PHD finger protein 20; 90.3 0.44 1.5E-05 36.6 5.1 49 183-243 19-67 (85)
114 4b9x_A TDRD1, tudor domain-con 90.1 0.36 1.2E-05 41.2 5.1 54 123-185 74-133 (226)
115 2d9t_A Tudor domain-containing 89.8 0.59 2E-05 34.4 5.4 56 184-248 8-63 (78)
116 2rso_A Chromatin-associated pr 89.4 0.29 9.8E-06 37.4 3.5 37 132-168 31-69 (92)
117 2hqx_A P100 CO-activator tudor 89.1 0.69 2.4E-05 39.5 6.1 55 123-185 74-134 (246)
118 1pfb_A Polycomb protein; chrom 88.6 0.44 1.5E-05 32.7 3.7 37 131-168 3-39 (55)
119 2lcc_A AT-rich interactive dom 88.4 1.5 5.1E-05 32.4 6.7 55 185-244 5-61 (76)
120 2lrq_A Protein MRG15, NUA4 com 88.1 0.089 3E-06 40.0 0.0 37 128-166 24-60 (85)
121 2ys9_A Homeobox and leucine zi 88.4 0.53 1.8E-05 35.0 4.2 41 20-72 18-58 (70)
122 3fdt_A Chromobox protein homol 88.0 0.5 1.7E-05 33.0 3.7 36 132-168 4-39 (59)
123 3h91_A Chromobox protein homol 87.9 0.52 1.8E-05 32.3 3.7 36 132-168 4-39 (54)
124 3i91_A Chromobox protein homol 87.6 0.55 1.9E-05 32.1 3.7 36 132-168 4-39 (54)
125 1q3l_A Heterochromatin protein 87.6 0.5 1.7E-05 34.5 3.6 41 127-168 12-52 (69)
126 3f2u_A Chromobox protein homol 87.5 0.45 1.5E-05 32.7 3.2 36 132-168 3-38 (55)
127 3m9q_A Protein MALE-specific l 87.0 2 6.8E-05 33.7 7.0 60 185-244 19-81 (101)
128 3m9p_A MALE-specific lethal 3 86.8 1.9 6.5E-05 34.4 6.9 59 185-244 19-81 (110)
129 3fdr_A Tudor and KH domain-con 86.6 1.4 4.9E-05 32.6 5.8 55 184-248 26-80 (94)
130 1wjr_A KIAA1617 protein; MBT d 86.4 0.64 2.2E-05 37.5 4.0 45 119-168 16-62 (127)
131 3g7l_A Chromo domain-containin 86.3 0.93 3.2E-05 31.8 4.3 40 128-168 4-44 (61)
132 2f5k_A MORF-related gene 15 is 85.7 1.6 5.4E-05 34.3 5.8 51 185-244 22-74 (102)
133 2dnt_A Chromodomain protein, Y 85.5 0.4 1.4E-05 35.3 2.2 39 130-168 12-50 (78)
134 1pdq_A Polycomb protein; methy 85.4 0.88 3E-05 33.5 4.0 39 129-168 18-56 (72)
135 3lwe_A M-phase phosphoprotein 85.3 0.66 2.3E-05 32.7 3.2 36 132-168 5-40 (62)
136 1g6z_A CLR4 protein; transfera 84.5 0.61 2.1E-05 33.6 2.7 39 130-168 7-46 (70)
137 2kvm_A Chromobox protein homol 83.2 1.1 3.8E-05 32.5 3.7 40 128-168 10-49 (74)
138 1ap0_A Modifier protein 1; chr 83.2 1.2 4E-05 32.4 3.8 37 131-168 13-49 (73)
139 2d9u_A Chromobox protein homol 82.5 1.4 4.9E-05 32.0 4.0 39 129-168 8-46 (74)
140 3i5g_B Myosin regulatory light 82.0 4.4 0.00015 31.6 7.1 52 11-70 6-60 (153)
141 3m9q_A Protein MALE-specific l 81.1 1.3 4.6E-05 34.7 3.7 48 119-167 27-78 (101)
142 2k1b_A Chromobox protein homol 80.7 0.95 3.2E-05 33.3 2.6 37 131-168 21-57 (73)
143 2wac_A CG7008-PA; unknown func 79.7 1.8 6.1E-05 35.7 4.2 54 123-185 60-118 (218)
144 1wgs_A MYST histone acetyltran 79.5 3.9 0.00013 33.1 6.1 54 185-244 12-67 (133)
145 2eko_A Histone acetyltransfera 78.9 3.8 0.00013 31.2 5.5 56 184-244 8-66 (87)
146 1wdc_B Scallop myosin; calcium 78.5 6.4 0.00022 29.3 6.7 54 9-70 6-62 (156)
147 2pmy_A RAS and EF-hand domain- 78.3 2.1 7.2E-05 30.3 3.7 50 11-70 17-69 (91)
148 2dnv_A Chromobox protein homol 78.2 1.6 5.5E-05 30.8 3.0 38 130-168 9-46 (64)
149 3bdl_A Staphylococcal nuclease 77.8 2.5 8.7E-05 40.7 5.2 57 123-185 420-480 (570)
150 2diq_A Tudor and KH domain-con 77.7 2.5 8.7E-05 32.1 4.2 54 185-248 32-85 (110)
151 3h8z_A FragIle X mental retard 76.6 2.6 9E-05 34.2 4.2 49 119-174 65-117 (128)
152 2ro0_A Histone acetyltransfera 76.1 6.5 0.00022 30.1 6.1 53 183-244 21-75 (92)
153 3mts_A Histone-lysine N-methyl 76.1 2.5 8.6E-05 30.1 3.5 34 134-168 3-36 (64)
154 2k3y_A Chromatin modification- 74.7 2.5 8.6E-05 34.8 3.7 26 185-214 9-34 (136)
155 2glo_A Brinker CG9653-PA; prot 74.7 5.6 0.00019 26.6 4.9 46 12-70 3-48 (59)
156 3m9p_A MALE-specific lethal 3 74.4 2.2 7.6E-05 34.0 3.2 48 118-166 26-77 (110)
157 1c07_A Protein (epidermal grow 72.7 4.5 0.00015 29.2 4.3 37 15-51 4-43 (95)
158 1j7q_A CAVP, calcium vector pr 72.2 10 0.00034 25.8 5.9 51 11-69 4-60 (86)
159 2lv7_A Calcium-binding protein 72.1 7.3 0.00025 28.7 5.5 51 11-69 26-79 (100)
160 3qrx_A Centrin; calcium-bindin 71.8 9.5 0.00032 28.6 6.1 45 7-51 14-61 (169)
161 2equ_A PHD finger protein 20-l 71.8 3.4 0.00011 30.5 3.4 30 122-157 17-46 (74)
162 2lhi_A Calmodulin, serine/thre 71.2 4.4 0.00015 32.2 4.3 40 12-51 2-44 (176)
163 1hlv_A CENP-B, major centromer 70.6 7.1 0.00024 29.4 5.2 48 11-73 4-51 (131)
164 2rnz_A Histone acetyltransfera 70.1 7.2 0.00025 30.2 5.1 52 184-244 24-77 (94)
165 3db3_A E3 ubiquitin-protein li 69.8 11 0.00036 32.0 6.4 68 179-248 4-82 (161)
166 2mys_C Myosin; muscle protein, 69.2 14 0.00048 26.7 6.4 48 14-69 1-51 (149)
167 2ovk_B RLC, myosin regulatory 68.8 10 0.00036 28.0 5.7 52 11-70 6-60 (153)
168 1fi6_A EH domain protein REPS1 67.5 7 0.00024 27.9 4.3 38 14-51 2-42 (92)
169 3fwb_A Cell division control p 67.4 19 0.00064 26.5 6.9 41 10-50 12-55 (161)
170 2ee1_A Chromodomain helicase-D 66.7 2.9 0.0001 30.0 2.1 39 128-166 8-46 (64)
171 3dlm_A Histone-lysine N-methyl 66.5 26 0.00091 30.8 8.5 93 126-234 19-112 (213)
172 1dtl_A Cardiac troponin C; hel 66.4 17 0.00056 26.9 6.4 41 10-50 7-51 (161)
173 3ox6_A Calcium-binding protein 66.2 23 0.00077 25.6 7.0 39 13-51 3-44 (153)
174 2llk_A Cyclin-D-binding MYB-li 66.2 17 0.00057 26.6 6.1 43 11-69 22-64 (73)
175 2wac_A CG7008-PA; unknown func 66.1 8.8 0.0003 31.4 5.2 85 149-247 17-102 (218)
176 3j04_B Myosin regulatory light 65.8 11 0.00038 27.3 5.2 37 15-51 1-40 (143)
177 2eqk_A Tudor domain-containing 65.2 6.6 0.00022 30.0 3.9 40 122-168 29-68 (85)
178 2jnf_A Troponin C; stretch act 64.8 14 0.00047 27.3 5.7 40 12-51 4-47 (158)
179 1avs_A Troponin C; muscle cont 64.7 17 0.00059 24.9 5.9 49 13-69 12-63 (90)
180 1tc3_C Protein (TC3 transposas 64.0 20 0.0007 21.3 5.5 40 14-70 5-44 (51)
181 2joj_A Centrin protein; N-term 63.6 15 0.0005 24.1 5.1 47 15-69 1-50 (77)
182 2l8d_A Lamin-B receptor; DNA b 63.3 19 0.00065 26.4 5.9 50 185-244 9-58 (66)
183 2cqq_A RSGI RUH-037, DNAJ homo 62.9 20 0.00069 25.9 6.0 48 12-71 8-55 (72)
184 2elh_A CG11849-PA, LD40883P; s 62.3 20 0.00068 25.7 6.0 44 10-70 18-61 (87)
185 2hqx_A P100 CO-activator tudor 61.8 12 0.00043 31.5 5.5 103 127-248 14-117 (246)
186 2mys_B Myosin; muscle protein, 61.3 23 0.00079 26.4 6.4 51 12-70 16-70 (166)
187 2ktg_A Calmodulin, putative; e 60.9 21 0.00072 23.9 5.6 50 12-69 5-57 (85)
188 3i5g_C Myosin catalytic light 60.4 9.4 0.00032 29.8 4.2 38 14-51 2-44 (159)
189 2opo_A Polcalcin CHE A 3; calc 60.2 13 0.00043 25.2 4.4 48 13-69 3-53 (86)
190 3u0k_A Rcamp; fluorescent prot 58.5 17 0.0006 34.9 6.4 51 11-69 292-345 (440)
191 1exr_A Calmodulin; high resolu 58.0 26 0.00088 25.8 6.1 38 14-51 3-43 (148)
192 2r58_A Polycomb protein SCM; M 57.6 9.6 0.00033 34.1 4.2 45 118-167 147-191 (265)
193 2lrq_A Protein MRG15, NUA4 com 62.2 2.2 7.4E-05 32.2 0.0 51 185-244 12-64 (85)
194 1s6c_A KV4 potassium channel-i 57.5 19 0.00065 27.4 5.4 38 12-49 12-50 (183)
195 2lmt_A Calmodulin-related prot 57.1 10 0.00035 28.5 3.7 38 14-51 3-43 (148)
196 2biv_A SCML2 protein, sex COMB 56.8 10 0.00035 33.4 4.2 46 118-168 175-220 (243)
197 2ldm_A Uncharacterized protein 61.5 2.3 7.8E-05 32.2 0.0 32 123-161 15-46 (81)
198 3dtp_E RLC, myosin regulatory 56.2 26 0.00087 27.6 6.2 50 12-69 48-100 (196)
199 2k3y_A Chromatin modification- 55.5 4.7 0.00016 33.2 1.7 19 149-167 78-96 (136)
200 2yum_A ZZZ3 protein, zinc fing 55.3 51 0.0017 23.1 7.2 52 11-72 7-59 (75)
201 3oa6_A MALE-specific lethal 3 55.1 5.9 0.0002 31.6 2.1 20 148-167 59-78 (110)
202 2biv_A SCML2 protein, sex COMB 53.9 11 0.00037 33.3 3.8 89 119-213 67-198 (243)
203 2ovk_C Myosin catalytic light 53.6 12 0.0004 27.9 3.5 39 13-51 1-44 (159)
204 2bud_A Males-absent on the fir 53.0 24 0.00082 27.2 5.2 53 187-244 16-70 (92)
205 2r58_A Polycomb protein SCM; M 53.0 11 0.00038 33.7 3.8 98 119-231 39-179 (265)
206 4b9w_A TDRD1, tudor domain-con 52.9 36 0.0012 28.0 6.8 54 185-248 65-118 (201)
207 2rn7_A IS629 ORFA; helix, all 52.8 20 0.00067 26.2 4.6 50 12-71 4-54 (108)
208 1wdc_C Scallop myosin; calcium 52.7 11 0.00036 28.0 3.2 38 13-50 1-43 (156)
209 1jko_C HIN recombinase, DNA-in 51.6 9 0.00031 23.5 2.2 42 14-72 5-46 (52)
210 2dig_A Lamin-B receptor; tudor 50.6 28 0.00096 25.6 5.0 50 185-244 12-61 (68)
211 3i9v_2 NADH-quinone oxidoreduc 50.5 10 0.00035 31.9 3.1 19 33-51 39-57 (181)
212 2cqr_A RSGI RUH-043, DNAJ homo 50.5 54 0.0019 23.7 6.6 48 11-70 17-65 (73)
213 4ds7_A Calmodulin, CAM; protei 50.2 33 0.0011 24.6 5.5 39 13-51 3-44 (147)
214 1w7j_B Myosin light chain 1; m 49.7 6.2 0.00021 29.0 1.4 39 13-51 2-43 (151)
215 2aao_A CDPK, calcium-dependent 48.4 45 0.0015 24.6 6.1 37 14-50 20-59 (166)
216 1qp6_A Protein (alpha2D); de n 48.1 7.2 0.00025 25.0 1.3 29 19-48 2-30 (35)
217 3bdl_A Staphylococcal nuclease 47.8 30 0.001 33.3 6.2 54 184-248 410-463 (570)
218 2iw5_B Protein corest, REST co 47.8 56 0.0019 29.1 7.4 59 2-75 121-181 (235)
219 3h6z_A Polycomb protein SFMBT; 47.4 15 0.00052 35.1 4.1 46 118-168 380-425 (447)
220 2e5p_A Protein PHF1, PHD finge 47.0 42 0.0015 24.7 5.5 42 179-226 3-44 (68)
221 2jn6_A Protein CGL2762, transp 46.9 34 0.0012 24.5 5.1 46 12-72 3-48 (97)
222 1g8i_A Frequenin, neuronal cal 46.4 31 0.0011 26.2 5.1 36 12-47 19-55 (190)
223 4b9x_A TDRD1, tudor domain-con 45.5 39 0.0013 28.5 5.9 55 184-248 64-118 (226)
224 2eqj_A Metal-response element- 45.4 54 0.0018 23.9 5.8 32 180-214 8-39 (66)
225 1eh2_A EPS15; calcium binding, 44.7 39 0.0013 25.3 5.2 38 14-51 8-47 (106)
226 2f2o_A Calmodulin fused with c 44.6 33 0.0011 25.8 4.9 38 13-50 3-43 (179)
227 2epb_A Chromodomain-helicase-D 44.5 15 0.0005 26.3 2.7 40 128-167 8-52 (68)
228 1fpw_A Yeast frequenin, calciu 44.3 55 0.0019 24.8 6.2 37 12-48 19-56 (190)
229 2kgr_A Intersectin-1; structur 44.1 30 0.001 25.7 4.5 38 14-51 7-47 (111)
230 2bl0_C Myosin regulatory light 43.8 32 0.0011 24.8 4.5 35 16-50 1-38 (142)
231 3fia_A Intersectin-1; EH 1 dom 43.6 32 0.0011 27.2 4.8 59 14-72 26-98 (121)
232 1qv0_A Obelin, OBL; photoprote 42.0 59 0.002 24.7 6.0 40 12-51 10-58 (195)
233 1top_A Troponin C; contractIle 41.4 29 0.00099 25.4 4.0 38 13-50 12-52 (162)
234 3f70_A Lethal(3)malignant brai 41.0 24 0.0008 33.9 4.3 45 118-167 370-414 (456)
235 2ofy_A Putative XRE-family tra 40.9 15 0.00051 25.4 2.2 47 12-72 3-52 (86)
236 3p8d_A Medulloblastoma antigen 40.6 28 0.00094 25.3 3.6 32 122-160 14-45 (67)
237 2cu7_A KIAA1915 protein; nucle 40.6 49 0.0017 23.2 5.0 45 11-71 8-53 (72)
238 2bec_A Calcineurin B homologou 40.2 20 0.00069 28.0 3.1 38 12-50 20-60 (202)
239 2jpf_A Hypothetical protein; a 40.1 14 0.00047 29.3 2.1 20 51-71 42-61 (127)
240 2kn2_A Calmodulin; S MAPK phos 39.9 46 0.0016 22.6 4.6 35 15-49 3-40 (92)
241 3ut1_A Lethal(3)malignant brai 39.9 32 0.0011 31.5 4.8 46 118-168 251-296 (324)
242 1s1e_A KV channel interacting 38.7 59 0.002 26.4 5.9 37 12-48 45-82 (224)
243 2eqk_A Tudor domain-containing 38.5 42 0.0014 25.5 4.5 50 185-244 21-70 (85)
244 2din_A Cell division cycle 5-l 37.9 77 0.0026 21.7 5.5 45 11-71 8-52 (66)
245 3e9g_A Chromatin modification- 37.9 18 0.00061 29.7 2.5 22 146-167 73-94 (130)
246 1u78_A TC3 transposase, transp 37.7 47 0.0016 24.5 4.7 42 13-71 5-46 (141)
247 1k78_A Paired box protein PAX5 37.5 1.1E+02 0.0039 23.0 7.0 56 12-73 88-144 (149)
248 4hcz_A PHD finger protein 1; p 36.2 78 0.0027 22.6 5.3 30 184-216 2-31 (58)
249 3osg_A MYB21; transcription-DN 35.2 66 0.0023 24.8 5.4 44 11-70 61-105 (126)
250 1dgu_A Calcium-saturated CIB; 35.1 39 0.0013 25.8 4.0 39 11-50 10-59 (183)
251 1oz2_A Lethal(3)malignant brai 34.8 41 0.0014 30.7 4.7 46 118-168 256-301 (331)
252 1oz2_A Lethal(3)malignant brai 34.6 35 0.0012 31.2 4.2 44 119-167 153-196 (331)
253 2x48_A CAG38821; archeal virus 34.5 48 0.0016 21.1 3.8 39 14-69 13-53 (55)
254 1p4w_A RCSB; solution structur 33.5 72 0.0025 23.7 5.1 48 11-76 31-78 (99)
255 1x3p_A Cpsrp43; chromo-2 domai 33.3 7.8 0.00027 26.6 -0.3 34 133-168 2-36 (54)
256 1iq3_A Ralbp1-interacting prot 33.1 12 0.00041 28.2 0.7 40 12-51 13-55 (110)
257 2ewt_A BLDD, putative DNA-bind 33.0 83 0.0028 20.4 4.9 32 15-51 35-66 (71)
258 3mse_B Calcium-dependent prote 32.4 49 0.0017 25.4 4.2 45 16-70 34-81 (180)
259 3ask_A E3 ubiquitin-protein li 31.4 72 0.0025 28.0 5.5 52 187-242 4-59 (226)
260 1guu_A C-MYB, MYB proto-oncoge 31.2 83 0.0028 20.3 4.6 44 12-70 3-47 (52)
261 2h1e_A Chromo domain protein 1 30.8 24 0.00083 29.5 2.3 40 129-168 118-161 (177)
262 1pdn_C Protein (PRD paired); p 30.7 70 0.0024 22.8 4.6 41 14-71 17-57 (128)
263 1gv2_A C-MYB, MYB proto-oncoge 30.4 84 0.0029 23.1 5.0 44 11-70 55-99 (105)
264 1bjf_A Neurocalcin delta; calc 30.2 80 0.0027 23.9 5.1 38 12-49 19-57 (193)
265 2r1j_L Repressor protein C2; p 30.0 33 0.0011 22.0 2.4 23 40-72 21-43 (68)
266 1yx7_A Calsensin, LAN3-6 antig 29.8 30 0.001 23.0 2.2 32 17-48 3-37 (83)
267 2obh_A Centrin-2; DNA repair c 29.8 55 0.0019 24.0 3.9 35 16-50 1-38 (143)
268 2h1e_A Chromo domain protein 1 29.3 25 0.00084 29.4 2.1 33 134-166 15-65 (177)
269 2xi8_A Putative transcription 29.2 34 0.0012 21.8 2.3 23 40-72 17-39 (66)
270 3mwy_W Chromo domain-containin 29.0 21 0.00071 35.5 1.8 35 132-166 38-90 (800)
271 3qii_A PHD finger protein 20; 28.8 58 0.002 24.7 3.9 33 121-160 28-60 (85)
272 3feo_A MBT domain-containing p 28.8 49 0.0017 31.4 4.3 45 118-167 366-410 (437)
273 3ntk_A Maternal protein tudor; 28.6 94 0.0032 24.9 5.4 43 185-237 47-90 (169)
274 2ccm_A Calexcitin; EF hand, ca 28.6 1.1E+02 0.0038 23.1 5.6 34 14-47 5-42 (191)
275 1ity_A TRF1; helix-turn-helix, 28.5 1.4E+02 0.005 20.4 5.8 52 7-70 5-56 (69)
276 1iuf_A Centromere ABP1 protein 28.5 41 0.0014 26.3 3.2 50 9-71 6-60 (144)
277 2k27_A Paired box protein PAX- 28.2 1.4E+02 0.0048 22.9 6.2 41 13-70 24-64 (159)
278 2k0m_A Uncharacterized protein 27.9 47 0.0016 25.9 3.3 32 209-243 63-94 (104)
279 2b2y_A CHD-1, chromodomain-hel 27.8 33 0.0011 28.9 2.6 39 129-167 128-168 (187)
280 3e9g_A Chromatin modification- 27.7 41 0.0014 27.5 3.0 25 185-213 7-31 (130)
281 2q24_A Putative TETR family tr 27.4 38 0.0013 25.9 2.7 57 1-71 1-58 (194)
282 2pjp_A Selenocysteine-specific 27.4 35 0.0012 25.9 2.5 44 15-71 1-44 (121)
283 3feo_A MBT domain-containing p 27.3 77 0.0026 30.1 5.3 98 119-232 47-192 (437)
284 1zug_A Phage 434 CRO protein; 27.0 38 0.0013 21.9 2.3 24 40-73 19-42 (71)
285 3t76_A VANU, transcriptional r 26.8 1.3E+02 0.0046 21.7 5.5 19 33-51 61-79 (88)
286 3bd1_A CRO protein; transcript 26.6 42 0.0014 22.9 2.6 23 40-72 14-36 (79)
287 3f70_A Lethal(3)malignant brai 26.3 80 0.0027 30.2 5.3 88 119-213 45-180 (456)
288 3bs3_A Putative DNA-binding pr 26.0 41 0.0014 22.2 2.4 23 40-72 26-48 (76)
289 1nya_A Calerythrin; EF-hand, m 25.8 1E+02 0.0036 22.6 4.9 37 15-51 1-44 (176)
290 2jul_A Calsenilin; EF-hand, ca 25.6 1.1E+02 0.0036 25.2 5.3 36 13-48 86-122 (256)
291 3pm8_A PFCDPK2, calcium-depend 25.5 1.1E+02 0.0038 24.0 5.2 36 14-49 50-88 (197)
292 2lvv_A Flagellar calcium-bindi 25.3 78 0.0027 25.6 4.4 37 14-50 44-84 (226)
293 1k78_A Paired box protein PAX5 25.2 96 0.0033 23.5 4.7 41 13-70 31-71 (149)
294 1adr_A P22 C2 repressor; trans 25.1 43 0.0015 22.0 2.3 23 40-72 21-43 (76)
295 1h8a_C AMV V-MYB, MYB transfor 24.9 1.1E+02 0.0037 23.4 4.9 44 11-70 78-122 (128)
296 1g6u_A Domain swapped dimer; d 24.8 46 0.0016 22.5 2.4 18 13-30 15-32 (48)
297 3fmy_A HTH-type transcriptiona 24.6 67 0.0023 21.8 3.3 41 13-72 9-49 (73)
298 1r69_A Repressor protein CI; g 24.5 48 0.0016 21.3 2.4 23 40-72 17-39 (69)
299 3o9x_A Uncharacterized HTH-typ 24.4 63 0.0022 24.3 3.4 22 41-72 88-109 (133)
300 1w8x_P Protein P16, protein S, 24.2 93 0.0032 24.3 4.3 13 64-76 19-31 (117)
301 2k9q_A Uncharacterized protein 24.0 61 0.0021 21.8 3.0 21 31-51 38-58 (77)
302 2sas_A Sarcoplasmic calcium-bi 23.6 70 0.0024 23.8 3.5 35 14-48 1-39 (185)
303 3dcf_A Transcriptional regulat 23.2 37 0.0013 25.9 1.9 49 11-72 27-76 (218)
304 3cs1_A Flagellar calcium-bindi 23.1 1.1E+02 0.0037 24.5 4.8 38 13-50 40-81 (219)
305 3zqc_A MYB3; transcription-DNA 23.0 2.4E+02 0.0082 21.6 6.7 44 12-71 54-98 (131)
306 2b5a_A C.BCLI; helix-turn-heli 22.8 51 0.0017 21.7 2.4 23 40-72 26-48 (77)
307 3ut1_A Lethal(3)malignant brai 22.8 57 0.0019 29.8 3.4 44 118-166 147-190 (324)
308 2ict_A Antitoxin HIGA; helix-t 22.5 1.2E+02 0.0041 21.1 4.4 20 32-51 45-64 (94)
309 2d8n_A Recoverin; structural g 22.5 1.7E+02 0.0058 22.6 5.7 37 13-49 28-65 (207)
310 1lmb_3 Protein (lambda repress 22.2 87 0.003 21.5 3.6 20 32-51 54-73 (92)
311 3qwg_A ESX-1 secretion-associa 22.1 1.3E+02 0.0045 23.1 5.0 40 12-51 22-73 (123)
312 2hpk_A Photoprotein berovin; s 22.0 63 0.0021 25.2 3.1 38 12-49 27-67 (208)
313 1y7y_A C.AHDI; helix-turn-heli 21.5 57 0.0019 21.2 2.4 23 40-72 29-51 (74)
314 1gvd_A MYB proto-oncogene prot 21.4 1.6E+02 0.0054 19.0 4.6 44 12-70 3-47 (52)
315 1x57_A Endothelial differentia 21.3 1.2E+02 0.0041 20.9 4.2 20 32-51 50-69 (91)
316 3omt_A Uncharacterized protein 21.3 58 0.002 21.6 2.4 23 40-72 24-46 (73)
317 3kz3_A Repressor protein CI; f 21.1 59 0.002 22.1 2.4 45 15-72 2-50 (80)
318 3lqv_P Splicing factor 3B subu 21.0 1.4E+02 0.0047 19.8 4.0 29 14-43 1-31 (39)
319 2cjj_A Radialis; plant develop 20.9 1.7E+02 0.0058 22.0 5.2 48 12-71 8-56 (93)
320 2k9n_A MYB24; R2R3 domain, DNA 20.9 1.5E+02 0.005 22.1 4.8 43 12-70 53-96 (107)
321 3qq6_A HTH-type transcriptiona 20.9 92 0.0032 21.3 3.5 20 32-51 48-67 (78)
322 2bl0_B Myosin regulatory light 20.7 1.1E+02 0.0037 21.7 4.0 47 15-69 2-48 (145)
323 3k21_A PFCDPK3, calcium-depend 20.1 1.2E+02 0.0043 23.5 4.5 38 14-51 45-85 (191)
No 1
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.74 E-value=3.4e-18 Score=128.64 Aligned_cols=62 Identities=16% Similarity=0.240 Sum_probs=56.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCC
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESK--DDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPT 77 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~--~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~ 77 (250)
.+.||.||.||.+|+.+||+.|+..+ ++||+...+++||..++|++ +||++||||||+|++.
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~----------~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPR----------QVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCH----------HHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCc----------ccccCCccccCcCCCC
Confidence 34677899999999999999999854 68999999999999999998 9999999999999873
No 2
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=3.8e-18 Score=124.04 Aligned_cols=61 Identities=21% Similarity=0.374 Sum_probs=56.3
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTKV 79 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~~ 79 (250)
..|+.||.||+.|+..||+.|.. ++||+...+..||..++|++ .||++||||||++++...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAA--NKFITKDKRRKISAATSLSE----------RQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCCH----------HHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCCCH----------HHhhHhhHhHHHHhcccC
Confidence 45678999999999999999999 78999999999999999998 999999999999998443
No 3
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=123.82 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=57.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCCCC
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTKVT 80 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~~~ 80 (250)
+..|+.||.||..|+..||+.|.. ++||+...++.||..++|++ .||++||||||++++...+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQK--TQYLALPERAELAASLGLTQ----------TQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHSSCCH----------HHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcC--CCCCCHHHHHHHHHHhCCCH----------HHHHHHHHHHhhhhcccCC
Confidence 446778999999999999999998 78999999999999999998 9999999999999984443
No 4
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.9e-18 Score=127.04 Aligned_cols=61 Identities=26% Similarity=0.343 Sum_probs=56.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTKV 79 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~~ 79 (250)
+.|+.||.||..||..||+.|.. ++||+...+..||..++|++ +||++||||||++++...
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEK--QKYLSTPDRIDLAESLGLSQ----------LQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCH----------HHeeeccHHHHHHhhccc
Confidence 46778999999999999999999 78999999999999999998 999999999999987443
No 5
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=3.6e-18 Score=131.14 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=65.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC-----CCCcCCCCCccchhHHHHHHhhhcccCCCC
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFS-----CSAGRAGKPVVKWTEVQSWFQSRQQDRPTK 78 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~-----lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~ 78 (250)
+..||.|+.||++||..||+.|+. ++||+...+++||+.+| .+.+++|+..|+++||++||||||++++.+
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~--~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNE--NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 346778999999999999999999 79999999999999999 888889999999999999999999998633
No 6
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.73 E-value=3.2e-18 Score=121.56 Aligned_cols=58 Identities=19% Similarity=0.356 Sum_probs=50.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
+.|+.||.||+.|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~k 59 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQK--QKYLSLQQMQELSSILNLSY----------KQVKTWFQNQRMKCK 59 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHTCG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCH----------HHhhHHhHHhhcchh
Confidence 45678999999999999999998 78999999999999999998 999999999999986
No 7
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=7.9e-18 Score=121.91 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=55.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTK 78 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~ 78 (250)
..|+.||.||++|+..||+.|.. ++||+...++.||..+||++ .||++||||||++++.+
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDA--NAYPKDDEFEQLSNLLNLPT----------RVIVVWFQNARQKARKS 65 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHSCCCH----------HHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCH----------HHhHHhhHhhhHHHhhc
Confidence 46678999999999999999999 78999999999999999998 99999999999998744
No 8
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.6e-18 Score=123.35 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=55.7
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTK 78 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~ 78 (250)
..||.||.||.+|+..||+.|.. ++||+...++.||..++|++ .||++||||||++++..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQE--TKYPDVGTREQLARKVHLRE----------EKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCCCH----------HHeehcccccccccccc
Confidence 45678999999999999999999 78999999999999999998 99999999999998643
No 9
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.71 E-value=1.6e-17 Score=122.04 Aligned_cols=60 Identities=22% Similarity=0.405 Sum_probs=55.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTK 78 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~ 78 (250)
..|+.|+.||+.|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYAT--NKFITKDKRRRISATTNLSE----------RQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHH--TSCCCHHHHHHHHHHHTSCS----------HHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhh--CCCcCHHHHHHHHHHHCCCH----------HHHHHHHHHHhHHHHHH
Confidence 45678999999999999999999 78999999999999999998 99999999999998743
No 10
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.71 E-value=6.6e-18 Score=120.51 Aligned_cols=57 Identities=19% Similarity=0.388 Sum_probs=52.6
Q ss_pred CCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 8 QRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 8 ~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
.|+.||.||..|+..||+.|.. ++||+...+..||..+|||+ +||++||||||++++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~k 59 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF--NKYISRPRRVELAVMLNLTE----------RHIKIWFQNRRMKWK 59 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCcCH----------HHhhHHHHhhhhhhh
Confidence 5678999999999999999999 78999999999999999998 999999999999864
No 11
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=123.77 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=56.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCC
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPT 77 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~ 77 (250)
++.|+.||.||..|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++.
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~vWFqNRR~k~kk 79 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQR--QKYLSLQQMQELSNILNLSY----------KQVKTWFQNQRMKSKR 79 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHH--SSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHcCCCH----------HHHHHHHHHHHHHHHH
Confidence 456778999999999999999998 78999999999999999998 9999999999999873
No 12
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=1.3e-17 Score=119.82 Aligned_cols=58 Identities=12% Similarity=0.209 Sum_probs=54.6
Q ss_pred CCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCC
Q 025634 8 QRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPT 77 (250)
Q Consensus 8 ~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~ 77 (250)
.||.||.||++|+..||+.|.. ++||+...++.||..+|||+ .||++||||||++++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk 60 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA--NPRPDALMKEQLVEMTGLSP----------RVIRVWFQNKRCKDKK 60 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHHCcCH----------HHHHHHhHHHHHHHhH
Confidence 5668999999999999999999 78999999999999999998 9999999999999873
No 13
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.71 E-value=6.5e-18 Score=119.63 Aligned_cols=57 Identities=14% Similarity=0.413 Sum_probs=51.0
Q ss_pred CCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 8 QRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 8 ~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
.||.||.||+.|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~k 59 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNE--NRYLTERRRQQLSSELGLNE----------AQIKIWFKNKRAKIK 59 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCcCH----------HHHHHHhhhhccccc
Confidence 4668999999999999999999 78999999999999999998 999999999998864
No 14
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-18 Score=125.56 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=56.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTKV 79 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~~ 79 (250)
+.||.||.||++|+..||+.|.. ++||+...++.||..++|++ .||++||||||++++.+.
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLL--DSNPTRKMLDHIAHEVGLKK----------RVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHH--CSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCcCH----------HHhHHHhHHHHHhHhhhc
Confidence 46678999999999999999999 78999999999999999998 999999999999987443
No 15
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.1e-17 Score=116.98 Aligned_cols=56 Identities=29% Similarity=0.411 Sum_probs=52.6
Q ss_pred CCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 9 RSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 9 Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
|+.||.||++|+..||+.|.. ++||+...+..||..+|||+ +||++||||||++++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~k 56 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ--KQYLSIAERAEFSSSLSLTE----------TQVKIWFQNRRAKAK 56 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHHCcCH----------HHhhhhhhHhhhhhc
Confidence 468999999999999999999 78999999999999999998 999999999998753
No 16
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.70 E-value=1.2e-17 Score=117.90 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=47.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDR 75 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~ 75 (250)
..|+.|+.||.+|+..||..|.. +.||+...++.||..+|||+ .||++||||||+++
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~--~~yp~~~~r~~La~~~~l~~----------~qV~~WFqNrR~k~ 60 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRR--KQSLNSKEKEEVAKKCGITP----------LQVRVWFINKRMRS 60 (61)
T ss_dssp --------CCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh--CCCcCHHHHHHHHHHHCcCH----------HHHHHHHHHHHhcc
Confidence 46678999999999999999999 68999999999999999998 99999999999876
No 17
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=2.3e-17 Score=122.67 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=55.3
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPT 77 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~ 77 (250)
..||.||.||.+|+..||+.|.. ++||+...++.||..++|++ +||++||||||++++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNRR~k~rk 64 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAK--TRYPDIFMREEVALKINLPE----------SRVQVWFKNRRAKCRQ 64 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCcCH----------HHhhhhhHHHhHHhhH
Confidence 46778999999999999999999 78999999999999999998 9999999999999863
No 18
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=115.91 Aligned_cols=55 Identities=22% Similarity=0.388 Sum_probs=51.9
Q ss_pred CCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccC
Q 025634 9 RSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDR 75 (250)
Q Consensus 9 Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~ 75 (250)
|+.|+.||+.|+..||..|.. ++||+...+..||..+||++ .||++||||||+++
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQ--QRYLSAPERDQLASVLKLTS----------TQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCcCH----------HHHHHhhHHhhccC
Confidence 458999999999999999998 78999999999999999998 99999999999875
No 19
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=9.5e-18 Score=121.90 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=54.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
+..++.|+.||.+|+..||+.|.. ++||+...++.||..++|++ +||++||||||++++
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~r 63 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFET--QKYLSPPERKRLAKMLQLSE----------RQVKTWFQNRRAKWR 63 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHCCCH----------HHhhHhhHhhHhhcC
Confidence 345668999999999999999998 78999999999999999998 999999999999986
No 20
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.70 E-value=2.1e-17 Score=124.78 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=54.8
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhh-C--CCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCC
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMES-K--DDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPT 77 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~-~--~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~ 77 (250)
++.||.||.||.+|+.+|| .|.++ + ++||+...+++||..++|++ .|||+||||||+|++.
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e----------~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRR----------QVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCH----------HHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCc----------CcccccccccccCCCC
Confidence 4567789999999999999 78883 2 58999999999999999998 9999999999999873
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=121.13 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=55.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPT 77 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~ 77 (250)
..|+.||.||.+|+..||+.|.. ++||+...++.||..+||++ .||++||||||++++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~kk 64 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDI--NNSPSEEQIKEMADKSGLPQ----------KVIKHWFRNTLFKERQ 64 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHH--CSSCCTTHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHhCCCH----------HHHHHHhhhhhHHHhh
Confidence 46678999999999999999999 78999999999999999998 9999999999999763
No 22
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.69 E-value=2.8e-17 Score=121.61 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=56.2
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 4 LRPRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 4 ~r~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
+.+..|+.||.||..|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNRR~k~k 65 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQ--QRYLSAPEREHLASLIRLTP----------TQVKIWFQNHRYKTK 65 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHhCCCH----------HHHHHHhHHhhcchh
Confidence 34556778999999999999999999 78999999999999999998 999999999999875
No 23
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=2.4e-17 Score=116.38 Aligned_cols=56 Identities=23% Similarity=0.469 Sum_probs=52.2
Q ss_pred CCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 9 RSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 9 Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
||.||.||++|+..||+.|.. ++||+...+..||..+|||+ .||++||||||++++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~k 57 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK--ENYVSRPRRCELAAQLNLPE----------STIKVWFQNRRMKDK 57 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHCcCH----------HHHHHhhHHHHhHhh
Confidence 568999999999999999999 78999999999999999998 999999999998754
No 24
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=6.5e-17 Score=118.22 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=55.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTK 78 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~ 78 (250)
..++.||.||++|+..||+.|.. ++||+...+++||..++|++ .||++||||||++++..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLK--NQFPHDSEIIRLMKITGLTK----------GEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCcCH----------HHeeeCChhHhHHHHhh
Confidence 35668999999999999999999 78999999999999999998 99999999999998843
No 25
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=2.4e-17 Score=122.73 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=55.2
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
+..||.||.||..|+..||+.|.. ++||+...+..||..++|++ .||++||||||++++
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~vWFqNRR~k~k 63 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFER--THYPDVFARERLAAKIDLPE----------ARIQVWFSNRRAKWR 63 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCCCH----------HHhhHHHHHHHHHHH
Confidence 346778999999999999999998 78999999999999999998 999999999999986
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.68 E-value=1.8e-17 Score=120.24 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=53.3
Q ss_pred CCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 9 RSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 9 Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
||.||.||+.|+..||+.|.. ++||+...+..||..+||++ +||++||||||++++
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~vWFqNRR~k~k 58 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHF--NRYLTRRRRIEIAHALSLTE----------RQIKIWFQNRRMKWK 58 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHH--CSSCCTTHHHHHHHHHTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHcc--CCCCCHHHHHHHHHHHCcCH----------hhhhHHhHHHHhHHh
Confidence 568999999999999999999 78999999999999999998 999999999999986
No 27
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.68 E-value=3.3e-17 Score=118.63 Aligned_cols=57 Identities=18% Similarity=0.436 Sum_probs=53.7
Q ss_pred CCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 8 QRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 8 ~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
.|+.||.||..|+..||+.|.. +.||+...+..||..+||++ .||++||||||++++
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNRR~k~k 58 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ--GRYLTAPRLADLSAKLALGT----------AQVKIWFKNRRRRHK 58 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCcCH----------HHhhHhhHHHHHHHH
Confidence 4568999999999999999998 78999999999999999998 999999999999875
No 28
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.68 E-value=3.2e-17 Score=121.27 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=54.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
..|+.||.||..|+..||+.|.. ++||+...++.||..+||++ .||++||||||++++
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~vWFqNRR~k~k 69 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLF--NMYLTRDRRYEVARLLNLTE----------RQVKIWFQNRRMKMK 69 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHHH
Confidence 35668999999999999999999 78999999999999999998 999999999999875
No 29
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.68 E-value=1e-17 Score=121.17 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=54.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
+.|+.||.||+.|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~r 59 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQR--NRYPDMSTREEIAVWTNLTE----------ARVRVWFKNRRAKWR 59 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTT--CSSCCTTTTTHHHHHTTSCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHhHHHH
Confidence 46779999999999999999998 78999999999999999998 999999999999875
No 30
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.8e-17 Score=121.07 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=55.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPT 77 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~ 77 (250)
..||.||.||++|+..||+.|.. ++||+...++.||..++|++ .||++||||||++++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk 64 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAI--NHNPDAKDLKQLAQKTGLTK----------RVLQVWFQNARAKFRR 64 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCCH----------HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCCCH----------HHhhHccHHHHHHHHH
Confidence 45678999999999999999998 78999999999999999998 9999999999999863
No 31
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-17 Score=124.45 Aligned_cols=58 Identities=16% Similarity=0.285 Sum_probs=54.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCC----CCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKD----DLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~----~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
..||.||.||.+|+..||+.|.. + .||+...+++||.++||++ +||++||||||++++
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~~~~~yp~~~~r~~La~~lgL~~----------~qV~vWFqNrR~k~r 68 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDN--GMTSLGSVCREKIEAVATELNVDC----------EIVRTWIGNRRRKYR 68 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTT--TTTCCSHHHHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh--CCCCCCCcCHHHHHHHHHHhCCCH----------HHhhHhHHHHHHHHh
Confidence 46678999999999999999998 6 8999999999999999998 999999999999986
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.68 E-value=3.6e-17 Score=118.47 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=53.3
Q ss_pred CCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 9 RSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 9 Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
|+.||.||+.|+..||..|.. +.||+...+..||..+|||+ .||++||||||++++
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNRR~k~k 58 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQ--QKYLSAPEREHLASMIHLTP----------TQVKIWFQNHRYKMK 58 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCH----------HHhHHHhHHHhhhhh
Confidence 568999999999999999998 78999999999999999998 999999999999976
No 33
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-17 Score=117.63 Aligned_cols=58 Identities=21% Similarity=0.387 Sum_probs=54.2
Q ss_pred CCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCC
Q 025634 9 RSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTK 78 (250)
Q Consensus 9 Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~ 78 (250)
|+.||.||++|+..||+.|.. ++||+...+..||..+|||+ .||++||||||++++.+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV--NCYPGIDILEDLAQKLNLEL----------DRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCcCH----------HHhhHhhHhHHHHHhHh
Confidence 568999999999999999988 79999999999999999998 99999999999998643
No 34
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.67 E-value=4.9e-17 Score=121.15 Aligned_cols=59 Identities=20% Similarity=0.368 Sum_probs=54.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
...|+.||.||..|+..||+.|.. ++||+...+..||..+||++ +||++||||||++++
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~r 74 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFER--TQYPDIYTREELAQRTNLTE----------ARIQVWFQNRRARLR 74 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHhhhhh
Confidence 446778999999999999999999 78999999999999999998 999999999999875
No 35
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=6.8e-17 Score=117.76 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=55.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCC
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTK 78 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~ 78 (250)
+..|+.||.||..|+..||..|.. +.||+...+..||..+||++ .||++||||||++++.+
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQK--THYPDVYAREQLAMRTDLTE----------ARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCH----------HHHHHHhHHHHHHHHHH
Confidence 345678999999999999999998 78999999999999999998 99999999999998743
No 36
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.67 E-value=4e-17 Score=115.24 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=49.4
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 11 VFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
.||.||.+|+..||+.|.. ++||+...+..||..+|||+ .||++||||||++++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~r 55 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR--THYPDVFTREELAMKIGLTE----------ARIQVWFQNRRAKWR 55 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHC
T ss_pred CCcccCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHCcCH----------HHHHHHhhhhhhhhH
Confidence 4799999999999999999 78999999999999999998 999999999999876
No 37
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.67 E-value=5.7e-17 Score=124.52 Aligned_cols=60 Identities=22% Similarity=0.480 Sum_probs=55.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCC
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPT 77 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~ 77 (250)
+..|+.||.||.+|+..||+.|.. ++||+...+..||..+||++ +||++||||||++++.
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kr 74 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHK--QKYLASAERAALARGLKMTD----------AQVKTWFQNRRTKWRR 74 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHTTTCCH----------HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCh----------hhcccccHhhhhhhhh
Confidence 456778999999999999999999 78999999999999999998 9999999999999863
No 38
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=9.9e-17 Score=118.39 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=53.8
Q ss_pred CCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCCC
Q 025634 10 SVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTKV 79 (250)
Q Consensus 10 r~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~~ 79 (250)
+.|+.||++||..||+.|.. ++||+...++.||..++|++ +||++||||||++++..-
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~--~~yp~~~~r~~La~~~~l~~----------~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCR--NQFPGQSEVEHLTKVTGLST----------REVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH--SSSCCSHHHHHHHHHHCCCH----------HHHHHHHHHHHHHSSSCC
T ss_pred CCCccCCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCCCh----------HHhhHHhHHHhHHHHHhc
Confidence 36899999999999999999 78999999999999999998 999999999999988443
No 39
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.66 E-value=3.8e-17 Score=123.63 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=52.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
..||.||.||..|+..||+.|.. +.||+...+..||..+||++ .||++||||||++++
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~vWFqNRR~k~k 84 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHF--NRYLTRRRRIEIAHALSLTE----------RQIKIWFQNRRMKWK 84 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCcCH----------HHhhHHhHHHHHHhH
Confidence 35678999999999999999998 78999999999999999998 999999999999875
No 40
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=5.3e-17 Score=119.02 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=52.5
Q ss_pred CCCCccCCHHHHHHHHHHHH-hhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 9 RSVFTGFTKTELEKMEKLLM-ESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 9 Rr~Rt~FT~~Ql~eLEk~f~-~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
++.||.||++|+..||+.|. . ++||+...+..||..+||++ .||++||||||++++
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~--~~yp~~~~r~~LA~~~~l~~----------~qV~~WFqNRR~k~r 59 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV--NKHPDPTTLCLIAAEAGLTE----------EQTQKWFKQRLAEWR 59 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT--TSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHHH
Confidence 45789999999999999998 5 68999999999999999998 999999999999986
No 41
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.66 E-value=6.1e-17 Score=121.18 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=51.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
..||.||.||..|+..||+.|.. +.||+...+..||..+||++ +||++||||||++++
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~vWFqNRR~k~k 76 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHT--NHYLTRRRRIEMAHALSLTE----------RQIKIWFQNRRMKLK 76 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCH----------HHHHHHhHHhhhhhh
Confidence 35678999999999999999999 78999999999999999998 999999999999875
No 42
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=2.1e-16 Score=122.11 Aligned_cols=57 Identities=16% Similarity=0.377 Sum_probs=52.1
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCCC
Q 025634 11 VFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTKV 79 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~~ 79 (250)
.+-.||.+||.+||+.|.. ++||+...+.+||..++|++ +||++||||||++++.+-
T Consensus 14 k~k~~t~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~lgLte----------~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLN--SSVLTDEELNRLRAQTKLTR----------REIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCCH----------HHHHHHHHHHHHHHHSCC
T ss_pred hhccCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCcCh----------HHCeecccccchHHHHHH
Confidence 3448999999999999999 78999999999999999998 999999999999987443
No 43
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=9.9e-17 Score=117.10 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=52.0
Q ss_pred CCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 10 SVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 10 r~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
+.||.||..|+..||+.|... ++||+...++.||..+||++ .||++||||||++++
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~-~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNRR~k~r 58 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKV-NKHPDPTTLCLIAAEAGLTE----------EQTQKWFKQRLAEWR 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSS-CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHCcCH----------HHhhHHhHHHHHHHh
Confidence 578999999999999999832 58999999999999999998 999999999999986
No 44
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=112.01 Aligned_cols=52 Identities=21% Similarity=0.506 Sum_probs=48.0
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 13 TGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
|.||++|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++
T Consensus 2 T~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNRR~k~k 53 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR--QKYLASAERAALAKALRMTD----------AQVKTWFQNRRTKWR 53 (56)
T ss_dssp --CCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh--cCCcCHHHHHHHHHHhCcCH----------HHhhHhhHHhhhhhc
Confidence 78999999999999998 78999999999999999998 999999999998864
No 45
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1e-16 Score=123.37 Aligned_cols=57 Identities=28% Similarity=0.440 Sum_probs=52.0
Q ss_pred CCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 8 QRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 8 ~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
.++.||.||..|+..||+.|.. ++||+...+..||..+||++ +||++||||||++++
T Consensus 34 ~rr~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~vWFqNRR~k~k 90 (97)
T 1b72_A 34 PSGLRTNFTTRQLTELEKEFHF--NKYLSRARRVEIAATLELNE----------TQVKIWFQNRRMKQK 90 (97)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCCCH----------HHhHHHHHHHhHHHh
Confidence 5668999999999999999998 78999999999999999998 999999999999875
No 46
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.6e-16 Score=116.24 Aligned_cols=56 Identities=16% Similarity=0.328 Sum_probs=52.4
Q ss_pred CCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCC
Q 025634 10 SVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPT 77 (250)
Q Consensus 10 r~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~ 77 (250)
+.|+.||++||..||+.|.. ++||+...+..||..++|++ +||++||||||++++.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNRR~k~kk 64 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ--NPLPLDEELDRLRSETKMTR----------REIDSWFSERRKKVNA 64 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCCH----------HHHHHHHHHHTTHHHH
T ss_pred CCCccCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCCCH----------HHhhHhhHHHHHHHHH
Confidence 35788999999999999999 78999999999999999998 9999999999999863
No 47
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.9e-16 Score=119.70 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=52.1
Q ss_pred CCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 10 SVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 10 r~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
+.|+.||++|+.+||+.|.. ++||+..++++||+.+||++ +||++||||||++++
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~--~~YPs~~er~~LA~~tgLte----------~qIkvWFqNrR~k~K 59 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ--CQWARREDYQKLEQITGLPR----------PEIIQWFGDTRYALK 59 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHCcCH----------HHhhHHhHhhHHHHH
Confidence 35788999999999999999 79999999999999999998 999999999999986
No 48
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=2.6e-16 Score=112.10 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=53.1
Q ss_pred CCCCCccCCHHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 8 QRSVFTGFTKTELEKMEKLLME-SKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 8 ~Rr~Rt~FT~~Ql~eLEk~f~~-~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
.++.|+.||..|+..||+.|.+ ..+.||+..+++.||..+||++ +||++||||||++++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~----------~qV~~WFqNrR~r~k 62 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITV----------SQVSNWFGNKRIRYK 62 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHTTTSS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHhc
Confidence 4568999999999999999943 1379999999999999999998 999999999999876
No 49
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=120.95 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=53.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPT 77 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~ 77 (250)
..+|.|+.||..|+..||+.|.. ++||+...+..||..++|++ .||++||||||+|++.
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kk 82 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVR--TQWPSPEEYDKLAKESGLAR----------TDIVSWFGDTRYAWKN 82 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCCCH----------HHeeecchhhhhHhhh
Confidence 35678999999999999999998 78999999999999999998 9999999999999873
No 50
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=6.4e-16 Score=112.86 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=55.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMES-KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
+..|+.|+.||..|+..||+.|.+| .+.||+...++.||..+||++ +||++||||||+++.
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~----------~qV~~WFqNrR~r~k 66 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTL----------LQVNNWFINARRRIL 66 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCH----------HHHHHHhHHHHhhcc
Confidence 3466789999999999999999873 468999999999999999998 999999999998875
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.61 E-value=3.9e-16 Score=113.99 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=52.9
Q ss_pred CCCCccCCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 9 RSVFTGFTKTELEKMEKLLMES-KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 9 Rr~Rt~FT~~Ql~eLEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
||.|+.||..|+..||..|.+| .+.||+...+..||..+|||+ +||++||||||++++
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~----------~qV~~WFqNrR~r~k 60 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITV----------SQVSNWFGNKRIRYK 60 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCH----------HHHHHHHHHHHhhcc
Confidence 5689999999999999999432 379999999999999999998 999999999999986
No 52
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=2e-16 Score=116.84 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=52.8
Q ss_pred CCCCccCCHHHHHHHHHHH-HhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCC
Q 025634 9 RSVFTGFTKTELEKMEKLL-MESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTK 78 (250)
Q Consensus 9 Rr~Rt~FT~~Ql~eLEk~f-~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~ 78 (250)
.+.+.+||.+|+.+||+.| .. ++||+...+++||..+||++ +||++||||||++++..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~--~~yp~~~~r~~LA~~l~l~e----------~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV--TKYPDEKRLKGLSKQLDWSV----------RKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT--CSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCCCh----------hhcchhhhhcccCCCCC
Confidence 4467889999999999999 76 79999999999999999998 99999999999998843
No 53
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.59 E-value=9.2e-16 Score=120.27 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=52.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC--------CCCcCCCCCc---cchhHHHHHHhhhccc
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFS--------CSAGRAGKPV---VKWTEVQSWFQSRQQD 74 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~--------lS~~RaGK~~---Vq~~QVk~WFQNRR~k 74 (250)
...||.||.||+.|+..||+.|.. ++||+...|++||+.+| +++.-++.+- |++.||++||||||++
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~--~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYER--QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 346778999999999999999999 78999999999999944 1111122222 5569999999999998
Q ss_pred CCCC
Q 025634 75 RPTK 78 (250)
Q Consensus 75 ~~~~ 78 (250)
...+
T Consensus 85 ~k~k 88 (99)
T 1lfb_A 85 EAFR 88 (99)
T ss_dssp TSCC
T ss_pred HHHh
Confidence 8644
No 54
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.59 E-value=1.1e-15 Score=115.46 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=53.7
Q ss_pred CCCCCccCCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 8 QRSVFTGFTKTELEKMEKLLMES-KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 8 ~Rr~Rt~FT~~Ql~eLEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
.++.|+.||..|+..||+.|..| .+.||+..+++.||..+||++ +||++||||||++++
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~----------~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSR----------IQIKNWVSNRRRKEK 86 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCH----------HHHHHHHHHHHhhcc
Confidence 45579999999999999999984 348999999999999999998 999999999999875
No 55
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.59 E-value=7.2e-16 Score=115.80 Aligned_cols=60 Identities=18% Similarity=0.331 Sum_probs=53.2
Q ss_pred CCCCccCCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCC
Q 025634 9 RSVFTGFTKTELEKMEKLLMES-KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTK 78 (250)
Q Consensus 9 Rr~Rt~FT~~Ql~eLEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~ 78 (250)
||.|+.||..|+..||+.|.+| .+.||+...++.||..+||++ +||++||||||++++..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~----------~qV~~WFqNrR~r~kk~ 62 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITV----------SQVSNWFGNKRIRYKKN 62 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHhhhc
Confidence 5689999999999999999432 379999999999999999998 99999999999998643
No 56
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.59 E-value=1.2e-15 Score=125.80 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=53.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPT 77 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~ 77 (250)
+.||.||.||..|+..||+.|.. ++||+...+..||..+||++ +||++||||||++++.
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kr 144 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGE--HSKPSSQEIMRMAEELNLEK----------EVVRVWFCNRRQREKR 144 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHTTS
T ss_pred CCCCCCcCccHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCCCh----------hhchhhhHhhhhhhhc
Confidence 45678999999999999999999 78999999999999999998 9999999999999873
No 57
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.59 E-value=1.2e-15 Score=107.45 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=50.8
Q ss_pred CccCCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 12 FTGFTKTELEKMEKLLMES-KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
++.||.+|+..||+.|..| .+.||+...++.||..+|||+ +||++||||||++++
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~----------~qV~~WFqNrR~r~k 57 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSR----------IQIKNWVSNRRRKEK 57 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCH----------HHHHHHHHHHHcccc
Confidence 6899999999999999984 248999999999999999998 999999999998865
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=114.83 Aligned_cols=56 Identities=18% Similarity=0.342 Sum_probs=51.5
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCC
Q 025634 11 VFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTK 78 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~ 78 (250)
.+..||.+||.+||+.|.. ++||+...++.||..++|++ +||++||||||+|++.+
T Consensus 16 k~k~~t~~Ql~~Le~~F~~--~~yp~~~~r~~La~~~~l~~----------~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK--SSFPTQAELDRLRVETKLSR----------REIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHTS
T ss_pred ccccCCHHHHHHHHHHHcc--CCCCCHHHHHHHHHHhCCCH----------HhccHhhHhHHHHHHHH
Confidence 4556999999999999999 78999999999999999998 99999999999998743
No 59
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.58 E-value=1e-15 Score=127.67 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=52.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
++.||.||.||..|+..||+.|.. ++||+...+..||..+||++ +||++||||||+|++
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~k 157 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFME--NQKPTSEDITLIAEQLNMEK----------EVIRVWFSNRRQKEK 157 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHT
T ss_pred CCCCcCccccCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHCCCh----------HHhhHhhHHhhhhhh
Confidence 356778999999999999999999 78999999999999999998 999999999999986
No 60
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=1.4e-15 Score=111.46 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCCCCC
Q 025634 17 KTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTKVTS 81 (250)
Q Consensus 17 ~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~~~~ 81 (250)
..|+.+||+.|... ++||+...+.+||.++|||+ +||++||||||++++.-.|+
T Consensus 9 ~~~~~~LE~~F~~~-~~yp~~~~r~~LA~~l~Lte----------rQVkvWFqNRR~k~k~~~~~ 62 (64)
T 1x2m_A 9 AQPNAILEKVFTAI-TKHPDEKRLEGLSKQLDWDV----------RSIQRWFRQRRNQEKPSGPS 62 (64)
T ss_dssp SCHHHHHHHHHHTT-CSSCCHHHHHHHHHHHCSCH----------HHHHHHHHHHHHHSCCSSCC
T ss_pred chHHHHHHHHHHHc-CCCcCHHHHHHHHHHhCCCH----------HHHHHHHHHHHhccCCCCCC
Confidence 45899999999543 68999999999999999998 99999999999999844443
No 61
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.57 E-value=3e-15 Score=112.78 Aligned_cols=60 Identities=10% Similarity=0.150 Sum_probs=55.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMES-KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
..|+.|+.||.+|+..||+.|.++ .+.||+..+++.||..+|||+ +||++||||||+++.
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~----------~qV~~WFqNrR~r~k 66 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSL----------LQISNWFINARRRIL 66 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHTH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCH----------HHhhHHhhhhHhhhc
Confidence 456789999999999999999874 459999999999999999998 999999999999985
No 62
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.57 E-value=5.5e-15 Score=109.10 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=52.7
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCCC
Q 025634 11 VFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTKV 79 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~~ 79 (250)
.....|+.|+.+||+.|.. ++||+...+..||.++|||+ +||++||||||+|++.+.
T Consensus 7 ~~~~~t~~ql~~LE~~F~~--~~yp~~~~r~~LA~~l~Lte----------~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 7 HHSHMSHTQVIELERKFSH--QKYLSAPERAHLAKNLKLTE----------TQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHSCCSS
T ss_pred CCCcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCh----------hheeecchhhhhhhhhhh
Confidence 4677899999999999999 78999999999999999998 999999999999998544
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.57 E-value=1.4e-15 Score=127.90 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=49.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCC
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTK 78 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~ 78 (250)
.+.||.||.||..|+..||+.|.. ++||+...+..||..++|++ +||++||||||+|++..
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kr~ 157 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLK--CPKPSAHEITGLADSLQLEK----------EVVRVWFCNRRQKEKRM 157 (164)
T ss_dssp ---------CCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHTBS
T ss_pred ccCCCCceeccHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCCCh----------hhhhhhhHHhhHHHhhc
Confidence 346778999999999999999999 79999999999999999998 99999999999998743
No 64
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.57 E-value=2.4e-15 Score=124.90 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=53.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCCCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPTKV 79 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~~~ 79 (250)
..||.||.||..|+..||+.|.. ++||+...++.||..+||++ +||++||||||++++...
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~la~~l~L~~----------~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKE--NKRPSKELQITISQQLGLEL----------STVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCcCH----------HHhhhcChhhhccccccC
Confidence 35778999999999999999999 78999999999999999998 999999999999987443
No 65
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.1e-15 Score=119.72 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=56.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC--------CCCcC---CCCCccchhHHHHHHhhhccc
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFS--------CSAGR---AGKPVVKWTEVQSWFQSRQQD 74 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~--------lS~~R---aGK~~Vq~~QVk~WFQNRR~k 74 (250)
++.||.||.||++|+.+||+.|+. ++||+...|++||+.+| .++.- -|+-.|++.||++||||||++
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~--~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDR--QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 457889999999999999999999 78999999999999993 11111 123345669999999999999
Q ss_pred CC
Q 025634 75 RP 76 (250)
Q Consensus 75 ~~ 76 (250)
++
T Consensus 82 ~k 83 (102)
T 2da6_A 82 EA 83 (102)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.56 E-value=2.4e-15 Score=123.96 Aligned_cols=59 Identities=22% Similarity=0.390 Sum_probs=55.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
++.||.||.||..|+..||+.|.. ++||+...+..||..+||++ +||++||||||++++
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNrR~k~K 149 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEK--NPLPTGQEITEMAKELNYDR----------EVVRVWFSNRRQTLK 149 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHT
T ss_pred CCCCCCCcccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCCCH----------HHhHHHHHHHHhccC
Confidence 346678999999999999999999 78999999999999999998 999999999999875
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.56 E-value=1.6e-15 Score=112.30 Aligned_cols=50 Identities=10% Similarity=0.291 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 15 FTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 15 FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
=|.+|+.+||+.|.. ++||+..++++||..+|||+ +||++||||||++++
T Consensus 11 ~~~~Ql~~LE~~F~~--~~YPs~~er~eLA~~tgLt~----------~qVkvWFqNRR~k~K 60 (66)
T 3nau_A 11 KTKEQIAHLKASFLQ--SQFPDDAEVYRLIEVTGLAR----------SEIKKWFSDHRYRCQ 60 (66)
T ss_dssp CCHHHHHHHHHHHHG--GGSCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCcCH----------HHhhHhcccchhhhh
Confidence 489999999999999 79999999999999999998 999999999999875
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5.3e-15 Score=107.11 Aligned_cols=54 Identities=22% Similarity=0.158 Sum_probs=50.3
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 11 VFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
.+..++.+|+..||+.|.. ++||+...+.+||.++||++ +||++||||||+|..
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~L~e----------~qVqvWFqNRRak~~ 59 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYAL--NAQPSAEELSKIADSVNLPL----------DVVKKWFEKMQAGQI 59 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHTCS
T ss_pred CCCCccHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCcCh----------hhcCcchhcccCCCC
Confidence 4567889999999999988 78999999999999999998 999999999999876
No 69
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.56 E-value=2.7e-15 Score=112.72 Aligned_cols=57 Identities=19% Similarity=0.326 Sum_probs=51.9
Q ss_pred CCccCCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCCC
Q 025634 11 VFTGFTKTELEKMEKLLMES-KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRPT 77 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~~ 77 (250)
.|++||.+|+..||+.|..| .+.||+...++.||..+||++ +||++||||||++++.
T Consensus 5 rr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~----------~qV~~WFqNrR~r~kk 62 (83)
T 1le8_B 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSR----------IQIKNWVAARRAKEKT 62 (83)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCH----------HHcccccHHHHccccc
Confidence 46779999999999999972 358999999999999999998 9999999999999874
No 70
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=7.1e-15 Score=110.18 Aligned_cols=59 Identities=8% Similarity=0.128 Sum_probs=54.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
..+|+||.||.+|+..|+..|+.. +.|||.+.|+.||.+++|++ .+||+||||||+-..
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~-~~yPd~~~r~~La~~tGL~~----------~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDV-GLYPDQEAIHTLSAQLDLPK----------HTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHH-CSCCCHHHHHHHHHHSCCCH----------HHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCH----------HHHHHhhccceeeec
Confidence 356799999999999999999996 48999999999999999998 999999999998766
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.50 E-value=9.5e-15 Score=121.35 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=55.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
.+.||.||.||..|+..||+.|.. ++||+...+..||..+|+++ .||++||||||+|++
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yps~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~K 152 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLK--SPKPSLQQITHIANQLGLEK----------DVVRVWFSNRRQKGK 152 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTT--CSCCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHcc--CCCCCHHHHHHHHHHcCCCh----------hheeecccccccccc
Confidence 356778999999999999999998 78999999999999999998 999999999999875
No 72
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.41 E-value=5e-14 Score=122.11 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=54.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCC----------CCc-CCCCCccchhHHHHHHhhhcccC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSC----------SAG-RAGKPVVKWTEVQSWFQSRQQDR 75 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~l----------S~~-RaGK~~Vq~~QVk~WFQNRR~k~ 75 (250)
+.||.||.||+.|+.+||+.|.. ++||+...|++||+.+|. +.+ --|+-.|++.||++||||||++.
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~--~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYER--QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH--HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cCCCCCcccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 46778999999999999999999 689999999999999991 111 12444466699999999999987
Q ss_pred C
Q 025634 76 P 76 (250)
Q Consensus 76 ~ 76 (250)
.
T Consensus 192 k 192 (194)
T 1ic8_A 192 A 192 (194)
T ss_dssp C
T ss_pred h
Confidence 5
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.38 E-value=3.3e-13 Score=98.04 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 14 GFTKTELEKMEKLLMES-KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
.||++|+..||..|.+| .+.||+..++++||..+|||+ .||++||||||+++.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~----------~qV~~WFqNrR~r~k 57 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTI----------LQVNNWFINARRRIV 57 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCH----------HHhhhhhHHHHHHHh
Confidence 69999999999999943 379999999999999999998 999999999999875
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.35 E-value=7.1e-13 Score=117.46 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=56.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCC--------CCc---CCCCCccchhHHHHHHhhhccc
Q 025634 6 PRQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSC--------SAG---RAGKPVVKWTEVQSWFQSRQQD 74 (250)
Q Consensus 6 ~~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~l--------S~~---RaGK~~Vq~~QVk~WFQNRR~k 74 (250)
.++||.|+.||++|+.+||+.|.. ++||+...|++||+.+|. ++. .-|...|++.||++||||||++
T Consensus 140 ~k~RR~R~~ft~~ql~~Le~~F~~--~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 140 KKMRRNRFKWGPASQQILYQAYDR--QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 357789999999999999999999 799999999999999982 221 2256678889999999999986
Q ss_pred C
Q 025634 75 R 75 (250)
Q Consensus 75 ~ 75 (250)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.26 E-value=4.1e-12 Score=113.81 Aligned_cols=55 Identities=13% Similarity=0.270 Sum_probs=51.4
Q ss_pred CCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 10 SVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 10 r~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
+.++.|+..|+.+||+.|+. ++||+...|++||.++|||+ +||++||||||+|++
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~--~~yp~~~~~~~la~~~~l~~----------~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRR--KQSLNSKEKEEVAKKCGITP----------LQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhc--CCCcCHHHHHHHHHHHCcCH----------HHhhHhhhhcccccC
Confidence 35788999999999999999 78999999999999999998 999999999999874
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.07 E-value=9.5e-11 Score=90.98 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=49.8
Q ss_pred CccCCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 12 FTGFTKTELEKMEKLLMES-KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
..-|+.+++..|+.-|.++ .+.||+.++++.||+.+|||+ +||++||||||+++.
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~----------~QV~~WF~NrR~R~k 64 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLST----------LQVCNWFINARRRLL 64 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCH----------HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHhh
Confidence 4568999999999999874 468999999999999999998 999999999998874
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.5e-10 Score=86.88 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccC
Q 025634 17 KTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDR 75 (250)
Q Consensus 17 ~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~ 75 (250)
.+|+..||+.|.. |.+|+.+++++||+++||+. ++|++||||||+..
T Consensus 14 k~ql~~Lk~yF~~--n~~Ps~eei~~LA~~lgL~~----------~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAM--NMEPNSDELLKISIAVGLPQ----------EFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCH----------HHHHHHHhhccccc
Confidence 5789999999999 78999999999999999997 99999999999754
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.04 E-value=1.8e-07 Score=62.06 Aligned_cols=18 Identities=28% Similarity=0.719 Sum_probs=15.4
Q ss_pred hHHHHHHhhhcccCCCCC
Q 025634 62 TEVQSWFQSRQQDRPTKV 79 (250)
Q Consensus 62 ~QVk~WFQNRR~k~~~~~ 79 (250)
.||++||||||+||+.+-
T Consensus 1 rQVkIWFQNRRaK~Kk~~ 18 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRV 18 (37)
T ss_dssp CCTTTTTTCSHHHHTSSH
T ss_pred CCceeccHHHHHHHHHHh
Confidence 489999999999998553
No 79
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=97.27 E-value=0.0035 Score=51.27 Aligned_cols=106 Identities=20% Similarity=0.292 Sum_probs=72.2
Q ss_pred ceeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceeccccccccCCCCCcccccccccCceEEEEee
Q 025634 118 EMEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVKNAVRERSVPLEPSDCHKLKVGGHVLCFQE 197 (250)
Q Consensus 118 ~~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~~~~R~rS~p~e~~eC~~v~~G~~v~cf~~ 197 (250)
+|.-|-+. ++||||-.-+- +-.+.+++|.|.+- -...++|.+. .+|+..-| ++. ..+..||.|-+|..
T Consensus 5 ~~~VEV~~-~~G~~y~a~V~------~v~~d~~~V~f~n~-w~~~~~vp~~-~vRlpP~~--~~~-~~f~~gd~VEV~~~ 72 (128)
T 3h8z_A 5 GLPVEVRG-SNGAFYKGFVK------DVHEDSVTIFFENN-WQSERQIPFG-DVRLPPPA--DYN-KEITEGDEVEVYSR 72 (128)
T ss_dssp TCEEEEEC-TTSCEEEEEEE------EECSSEEEEEETTC-TTCCEEEEGG-GEECCCCC-------CCCTTCEEEEEEC
T ss_pred ccEEEEec-CCCCEEEEEEE------EEeCCcEEEEEccc-cCcceEechh-hEEcCCCc--ccc-cCCCCCCEEEEEec
Confidence 46667777 67999995552 22444899999652 2236677776 77875544 344 47899999999995
Q ss_pred eC--CcceeEeeEEeeeeeccCCCCceeeEEEEEEec-C-Ccccccccccc
Q 025634 198 RR--DQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNH-D-NTEERVRLRRL 244 (250)
Q Consensus 198 ~~--~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h-~-~~ee~v~~~~~ 244 (250)
.+ +-.-||=|.|..++ .+.+.|.|+- | +..|+|++++|
T Consensus 73 ~~d~ep~gWw~a~I~~~k---------g~f~~V~y~~~~~~~~EiV~~~rl 114 (128)
T 3h8z_A 73 ANEQEPCGWWLARVRMMK---------GDFYVIEYAACDATYNEIVTLERL 114 (128)
T ss_dssp C---CCCEEEEEEEEEEE---------TTEEEEEETTC----CEEECGGGE
T ss_pred CCCCCcCccEEEEEEEee---------CCEEEEEEcCCCCCcceEEehhhe
Confidence 43 34469999999988 2478888766 3 35789999988
No 80
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=96.43 E-value=0.0056 Score=45.93 Aligned_cols=55 Identities=24% Similarity=0.572 Sum_probs=38.8
Q ss_pred ecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCccc----ceeccccccccCCCCCccccc
Q 025634 123 ARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDE----WVNVKNAVRERSVPLEPSDCH 184 (250)
Q Consensus 123 Ars~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDE----w~~v~~~~R~rS~p~e~~eC~ 184 (250)
|+-+.||.||-+.+. .+.+. ..+.|.|..||+.+.- ...+...| .++|.|+.+|.
T Consensus 36 a~~~~d~~wyRA~I~---~~~~~--~~~~V~fvDyGn~e~v~~~~lr~l~~~f--~~lP~qA~~Cs 94 (94)
T 3fdr_A 36 APLPTNGSWYRARVL---GTLEN--GNLDLYFVDFGDNGDCPLKDLRALRSDF--LSLPFQAIECS 94 (94)
T ss_dssp EEETTTTEEEEEEEE---EECTT--SCEEEEETTTCCEEEECGGGCEECCGGG--GCSCCCCCCC-
T ss_pred EEECCCCeEEEEEEE---EECCC--CeEEEEEEcCCCeEEEEHHHhhhcCHHH--hcCCcceEEeC
Confidence 455889999999986 23332 3799999999997532 22244444 58999999995
No 81
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=96.27 E-value=0.026 Score=50.10 Aligned_cols=92 Identities=22% Similarity=0.368 Sum_probs=66.0
Q ss_pred EecccCCCceeeeeeeheeeecc-----cCcceEEEEecCCCCCcccceeccccccccCCCCCcccccccccCceEEEEe
Q 025634 122 EARSSKDGAWYDVDMFLAHRFLD-----CGEAEVRVRFVGFGADEDEWVNVKNAVRERSVPLEPSDCHKLKVGGHVLCFQ 196 (250)
Q Consensus 122 EArs~~D~AWYdV~~fl~hR~~~-----~ge~ev~Vrf~gFg~eeDEw~~v~~~~R~rS~p~e~~eC~~v~~G~~v~cf~ 196 (250)
+||-...||||...+--=.+... +.+.-+.|.|.+|.+..--=+..+ .+|+|+.. ...=..|.+|..|.+.-
T Consensus 10 d~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~-~irprar~--~~~~~~l~~g~~vm~ny 86 (226)
T 3ask_A 10 DARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSR-DVRARART--IIKWQDLEVGQVVMLNY 86 (226)
T ss_dssp EEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGG-GEEECCCC--BCCGGGCCTTCEEEEEE
T ss_pred EeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccc-cccccccc--cCCccccccCcEEEEec
Confidence 57888999999988763333221 244677899999976655445555 57777755 44556889999999855
Q ss_pred ---eeCCcceeEeeEEeeeeecc
Q 025634 197 ---ERRDQGIHYDAHIAEIHRRM 216 (250)
Q Consensus 197 ---~~~~~~~yyDA~V~~v~r~~ 216 (250)
.-.+...||||+|..+.-.+
T Consensus 87 n~~~~~~~G~~y~~~I~~~~~~r 109 (226)
T 3ask_A 87 NPDNPKERGFWYDAEISRKRETR 109 (226)
T ss_dssp CTTSTTSCCEEEEEEEEEEEECS
T ss_pred ccCCccccCceeehhhhhhhhcc
Confidence 45567899999999988543
No 82
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.019 Score=44.48 Aligned_cols=43 Identities=14% Similarity=0.317 Sum_probs=34.6
Q ss_pred CCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceecccccc
Q 025634 127 KDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVKNAVR 172 (250)
Q Consensus 127 ~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~~~~R 172 (250)
.||.||...+. .-|. ..|..+..|||.||..--||||..- ++.
T Consensus 34 ~~~~~y~AkIl-~ir~-~~~~~~YyVHY~g~NkRlDEWV~~~-rl~ 76 (92)
T 2ro0_A 34 KNDEERLAEIL-SINT-RKAPPKFYVHYVNYNKRLDEWITTD-RIN 76 (92)
T ss_dssp ETTEEEEEEEE-EEEC-SSSSCEEEEEETTSCTTSCEEEEGG-GEE
T ss_pred ECCEEEEEEEE-EEEE-cCCCcEEEEEeCCcCcccccccCHh-Hcc
Confidence 49999999885 4444 3467899999999999999999975 444
No 83
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=95.56 E-value=0.053 Score=41.35 Aligned_cols=46 Identities=24% Similarity=0.422 Sum_probs=36.3
Q ss_pred eeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceeccc
Q 025634 119 MEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVKN 169 (250)
Q Consensus 119 ~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~~ 169 (250)
|-.||.... +.||..-+. +.+..+..|+|||.|+....|||+++..
T Consensus 24 mkLEA~D~~-~~~~~a~i~----~v~~~~~~v~VHfdGW~~~yDeWv~~dS 69 (88)
T 2eqm_A 24 ARLEALDYL-QKWYPSRIE----KIDYEEGKMLVHFERWSHRYDEWIYWDS 69 (88)
T ss_dssp CEEEEECTT-SCEEEEEEE----EEETTTTEEEEEESSSTTTEEEEEETTS
T ss_pred CEEEEEcCC-CCeeEEEEE----EEeccCCEEEEEECCCCCcccEEeeCCC
Confidence 788887554 589987775 3454445999999999999999999763
No 84
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=95.44 E-value=0.041 Score=44.85 Aligned_cols=43 Identities=30% Similarity=0.631 Sum_probs=33.5
Q ss_pred CCceeeeeeeheeee-cccCcceEEEEecCCCCCcccceecccccc
Q 025634 128 DGAWYDVDMFLAHRF-LDCGEAEVRVRFVGFGADEDEWVNVKNAVR 172 (250)
Q Consensus 128 D~AWYdV~~fl~hR~-~~~ge~ev~Vrf~gFg~eeDEw~~v~~~~R 172 (250)
||-||...+. .=|. -..|..+.+|||.||..--||||..- +++
T Consensus 25 d~~~y~AkIl-~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~-ri~ 68 (133)
T 1wgs_A 25 DSTWHSAEVI-QSRVNDQEGREEFYVHYVGFNRRLDEWVDKN-RLA 68 (133)
T ss_dssp TTEEEEEEEE-EEEEETTTTEEEEEEECTTTCSSCCEEECTT-TSC
T ss_pred CCCEEEEEEE-EEEeccCCCceEEEEeccCcCCCceeecChh-hcc
Confidence 8999999885 2222 13477899999999999999999964 444
No 85
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=95.39 E-value=0.016 Score=39.63 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=27.1
Q ss_pred EecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcc
Q 025634 122 EARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADED 162 (250)
Q Consensus 122 EArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeD 162 (250)
-|+-+.||.||...+. .+...+ .++.|.|.+||+.|.
T Consensus 9 ~A~~s~Dg~wYrA~I~---~i~~~~-~~~~V~fvDYGn~e~ 45 (54)
T 3s6w_A 9 FALYWEDNKFYRAEVE---ALHSSG-MTAVVKFIDYGNYEE 45 (54)
T ss_dssp EEEETTTTEEEEEEEE---EC--CC-SEEEEEETTTCCEEE
T ss_pred EEEECCCCCEEEEEEE---EEeCCC-CEEEEEEEccCCeEE
Confidence 3666899999999886 222233 389999999998753
No 86
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=95.16 E-value=0.04 Score=41.41 Aligned_cols=48 Identities=27% Similarity=0.569 Sum_probs=41.2
Q ss_pred ceeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 118 EMEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 118 ~~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
.+.|++ .++-.|.|...|.||+...|..+.+|+..||+.+++-|-+..
T Consensus 13 ~~~~~~---~~~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~ 60 (81)
T 4hae_A 13 NLYFQG---ASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEH 60 (81)
T ss_dssp CEEEEC---TTSCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGG
T ss_pred cccccC---CCCCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHH
Confidence 466654 556799999999999988898999999999999999998754
No 87
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.04 E-value=0.021 Score=43.78 Aligned_cols=47 Identities=17% Similarity=0.422 Sum_probs=36.1
Q ss_pred CCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceeccccccccCC
Q 025634 127 KDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVKNAVRERSV 176 (250)
Q Consensus 127 ~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~~~~R~rS~ 176 (250)
.++-||...+. .-|. ..|+.+..|||.||..--||||..- +++..++
T Consensus 25 ~~~~~y~AkIl-~i~~-~~~~~~YyVHY~g~NkRlDEWV~~~-rl~~~~~ 71 (87)
T 2eko_A 25 NEDEWPLAEIL-SVKD-ISGRKLFYVHYIDFNRRLDEWVTHE-RLDLKKI 71 (87)
T ss_dssp CCEECCEEEEE-EECC-SSSCCCEEEEECSSCSCCCEEECTT-TBCGGGC
T ss_pred CCCeEEEEEEE-EEEE-cCCCcEEEEEeCCCCcccccccCHh-Hcccccc
Confidence 58899998874 4444 3466799999999999999999975 5554443
No 88
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=94.92 E-value=0.039 Score=40.91 Aligned_cols=49 Identities=20% Similarity=0.355 Sum_probs=31.9
Q ss_pred EecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceeccccccccCCCCC
Q 025634 122 EARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVKNAVRERSVPLE 179 (250)
Q Consensus 122 EArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~~~~R~rS~p~e 179 (250)
-|+-+.||.||...+. .+...+ ..+.|.|.+||+.+. +++. ..|.+|.+
T Consensus 25 ~A~ys~Dg~wYRA~I~---~i~~~~-~~~~V~fvDYGN~e~--V~~~---~Lr~l~~~ 73 (77)
T 3pnw_C 25 FALYWEDNKFYRAEVE---ALHSSG-MTAVVKFIDYGNYEE--VLLS---NIKPIQTE 73 (77)
T ss_dssp EEEETTTTEEEEEEEE---EECTTS-SEEEEEETTTCCEEE--EEGG---GEECC---
T ss_pred EEEECCCCCEEEEEEE---EEeCCC-CEEEEEEEcCCCeEE--EeHH---HeEECChh
Confidence 3566899999999986 233334 389999999999543 5544 33445544
No 89
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.087 Score=41.03 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=35.1
Q ss_pred cCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceecccccc
Q 025634 126 SKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVKNAVR 172 (250)
Q Consensus 126 ~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~~~~R 172 (250)
..||.||...+. .=|. ..|+.+..|+|.||..--||||..- ++.
T Consensus 35 ~~~~~~yeAeIl-~ir~-~~g~~~YYVHY~g~NkRlDEWV~~~-RI~ 78 (94)
T 2rnz_A 35 QKNDEERLAEIL-SINT-RKAPPKFYVHYVNYNKRLDEWITTD-RIN 78 (94)
T ss_dssp ECSSCEEEEEEE-EEEC-SSSSCEEEEECTTSCSTTCEEEETT-TBC
T ss_pred EECCEEEEEEEE-EEEE-cCCCcEEEEEeCCcCcccccccCHH-Hcc
Confidence 469999999884 4443 3577899999999999999999975 443
No 90
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=94.48 E-value=0.097 Score=37.15 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=39.4
Q ss_pred ccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCccccccccccc
Q 025634 185 KLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRLC 245 (250)
Q Consensus 185 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~c 245 (250)
..++||.++|.- . ++..||.|+|.+|.... . .+.|.|..=.+.|.|++.+|-
T Consensus 8 ~~~vGd~c~A~~-s-~Dg~wYrA~I~~v~~~~---~----~~~V~fvdYGn~e~V~~~~Lr 59 (64)
T 4a4f_A 8 SWKVGDKCMAVW-S-EDGQCYEAEIEEIDEEN---G----TAAITFAGYGNAEVTPLLNLK 59 (64)
T ss_dssp CCCTTCEEEEEC-T-TTSSEEEEEEEEEETTT---T----EEEEEETTTTEEEEEEGGGEE
T ss_pred CCCCCCEEEEEE-C-CCCCEEEEEEEEEcCCC---C----EEEEEEEecCCEEEEeHHHcE
Confidence 568999777643 2 34579999999998421 1 468999888888999999884
No 91
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=94.35 E-value=0.06 Score=40.09 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=34.7
Q ss_pred CCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceeccccccccC
Q 025634 127 KDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVKNAVRERS 175 (250)
Q Consensus 127 ~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~~~~R~rS 175 (250)
++|-||...+. .=+. ..|..+..|+|.||...-||||..- +++..+
T Consensus 20 k~~~~y~AkIl-~i~~-~~~~~~Y~VHY~gwnkr~DEWV~~~-ri~~~~ 65 (76)
T 2lcc_A 20 KTQKIYEASIK-STEI-DDGEVLYLVHYYGWNVRYDEWVKAD-RIIWPL 65 (76)
T ss_dssp TEEEEEEEEEE-EEEE-ETTEEEEEEEETTSCCSSCEEEEGG-GEECSS
T ss_pred CCCCEEEEEEE-EEEc-cCCceEEEEEeCCcCCCceEecChh-hccccc
Confidence 56789998884 4443 4466789999999999999999965 444433
No 92
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=94.26 E-value=0.38 Score=40.88 Aligned_cols=86 Identities=23% Similarity=0.431 Sum_probs=61.4
Q ss_pred EecccCCCceeeeeeeheeeecc-----------------cCcceEEEEecCCCCCcccceeccccccccCCCCCccccc
Q 025634 122 EARSSKDGAWYDVDMFLAHRFLD-----------------CGEAEVRVRFVGFGADEDEWVNVKNAVRERSVPLEPSDCH 184 (250)
Q Consensus 122 EArs~~D~AWYdV~~fl~hR~~~-----------------~ge~ev~Vrf~gFg~eeDEw~~v~~~~R~rS~p~e~~eC~ 184 (250)
.||-..-|||+...+- ++.. +.+.-..|.|.+|.+..--=+.+ +.+|+|..-+= .=+
T Consensus 18 DarD~~~GAWFEA~Iv---~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~-~~iRpRARt~l--~w~ 91 (161)
T 3db3_A 18 DARDTNMGAWFEAQVV---RVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNS-RDVRARARTII--KWQ 91 (161)
T ss_dssp EEECTTTCCEEEEEEE---EEEEC-----------------CCEEEEEEESSCGGGCEEEEEG-GGEECCCCCBC--CGG
T ss_pred eeeccCCCcceEEEEE---EEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecch-hccccceEEec--cHH
Confidence 5788889999987664 3333 23467789998887665444445 47888876543 346
Q ss_pred ccccCceEEEEe---eeCCcceeEeeEEeeee
Q 025634 185 KLKVGGHVLCFQ---ERRDQGIHYDAHIAEIH 213 (250)
Q Consensus 185 ~v~~G~~v~cf~---~~~~~~~yyDA~V~~v~ 213 (250)
.|.+|+.|..=- +-++-..||||.|..+.
T Consensus 92 ~L~vGqvVMvNYN~d~PkerGfWYDaeI~~~~ 123 (161)
T 3db3_A 92 DLEVGQVVMLNYNPDNPKERGFWYDAEISRKR 123 (161)
T ss_dssp GCCTTCEEEEEECSSSTTSCCEEEEEEEEEEE
T ss_pred HCCcCcEEEEecCCCCccccceeEEEEEeeeh
Confidence 899999999744 45577899999999874
No 93
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=94.26 E-value=0.044 Score=38.24 Aligned_cols=40 Identities=25% Similarity=0.265 Sum_probs=29.2
Q ss_pred ecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 123 ARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 123 Ars~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
|+-+.||.||...+. .+...+ ..+.|.|.+||+. |-+++.
T Consensus 12 A~~s~Dg~wYrA~I~---~i~~~~-~~~~V~f~DYGn~--e~v~~~ 51 (59)
T 1mhn_A 12 AIWSEDGCIYPATIA---SIDFKR-ETCVVVYTGYGNR--EEQNLS 51 (59)
T ss_dssp EECTTTSCEEEEEEE---EEETTT-TEEEEEETTTTEE--EEEEGG
T ss_pred EEECCCCCEEEEEEE---EEcCCC-CEEEEEEEcCCCE--EEEcHH
Confidence 666889999999886 232223 4899999999986 445544
No 94
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=94.17 E-value=0.054 Score=42.18 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=32.2
Q ss_pred CCCceeeeeeeheeeeccc--CcceEEEEecCCCCCcccceec
Q 025634 127 KDGAWYDVDMFLAHRFLDC--GEAEVRVRFVGFGADEDEWVNV 167 (250)
Q Consensus 127 ~D~AWYdV~~fl~hR~~~~--ge~ev~Vrf~gFg~eeDEw~~v 167 (250)
.||.||.+.+. .=|.-.. |..+..|||.||..--||||..
T Consensus 26 ~dg~~yeAeIl-~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~ 67 (92)
T 2bud_A 26 EDGTVHRGQVL-QSRTTENAAAPDEYYVHYVGLNRRLDGWVGR 67 (92)
T ss_dssp TTSCEEEEEEE-EEECTTTCSSCCEEEEECSSSCTTTCEEEET
T ss_pred CCCCEEEEEEE-EEeeccCCCCCcEEEEEeCCcccccccccCH
Confidence 39999999884 4444332 5679999999999999999984
No 95
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=94.16 E-value=0.056 Score=41.58 Aligned_cols=56 Identities=23% Similarity=0.565 Sum_probs=39.0
Q ss_pred ecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCccc----ceeccccccccCCCCCcccccc
Q 025634 123 ARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDE----WVNVKNAVRERSVPLEPSDCHK 185 (250)
Q Consensus 123 Ars~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDE----w~~v~~~~R~rS~p~e~~eC~~ 185 (250)
|+-+.||.||-+.+. .+.. +..+.|.|..||+.+.- ...+...| .++|.|+.+|..
T Consensus 41 a~~~~d~~wyRA~V~---~~~~--~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f--~~lP~qA~~c~L 100 (110)
T 2diq_A 41 APLPTNGSWYRARVL---GTLE--NGNLDLYFVDFGDNGDCPLKDLRALRSDF--LSLPFQAIECSL 100 (110)
T ss_dssp ECCTTTCSCEEEEEC---CCCS--SSCEEEEETTTCCEEEECGGGCEECCHHH--HSSCCSSCCSCS
T ss_pred EEECCCCeEEEEEEE---EECC--CCeEEEEEEeCCCeEEEehHHhhcCcHHH--hCCCcceEEEEE
Confidence 565789999999886 2222 23899999999998532 11123333 579999999975
No 96
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=94.06 E-value=0.14 Score=41.00 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=40.0
Q ss_pred ccccCceEEEEe-eeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCC--cccccccccc
Q 025634 185 KLKVGGHVLCFQ-ERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDN--TEERVRLRRL 244 (250)
Q Consensus 185 ~v~~G~~v~cf~-~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~--~ee~v~~~~~ 244 (250)
+...|+.||||+ +....-+.|||.|++|.-..=+...-.-.++|-|.-=+ .-|-||-++|
T Consensus 19 ~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drl 81 (110)
T 3oa6_A 19 KFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHV 81 (110)
T ss_dssp CSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred ccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhh
Confidence 467899999999 44445677999999997554333333346888887554 3344555554
No 97
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=93.92 E-value=0.057 Score=41.27 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=31.8
Q ss_pred EecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceeccccccc
Q 025634 122 EARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVKNAVRE 173 (250)
Q Consensus 122 EArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~~~~R~ 173 (250)
-|+-+.||.||...+. .+...+ ..+.|.|.+||+.|. |++. .+|+
T Consensus 18 ~A~ys~Dg~wYrA~I~---~i~~~~-~~~~V~fiDYGN~E~--V~~~-~Lrp 62 (88)
T 1g5v_A 18 SAIWSEDGCIYPATIA---SIDFKR-ETCVVVYTGYGNREE--QNLS-DLLS 62 (88)
T ss_dssp EEECTTTCCEEEEEEE---EEETTT-TEEEEEETTTCCEEE--EEGG-GCBC
T ss_pred EEEECCCCCEEEEEEE---EecCCC-CEEEEEEecCCCEEE--EcHH-Hccc
Confidence 3677899999999886 232222 389999999999864 5544 4444
No 98
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=93.77 E-value=0.06 Score=38.24 Aligned_cols=45 Identities=20% Similarity=0.365 Sum_probs=31.8
Q ss_pred EecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceeccccccc
Q 025634 122 EARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVKNAVRE 173 (250)
Q Consensus 122 EArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~~~~R~ 173 (250)
-|+-+.||.||...+. .+...+ ..+.|.|.+||+.| .+++. .+|+
T Consensus 16 ~A~~s~Dg~wYrA~I~---~v~~~~-~~~~V~fvdYGn~e--~V~~~-~Lrp 60 (64)
T 4a4f_A 16 MAVWSEDGQCYEAEIE---EIDEEN-GTAAITFAGYGNAE--VTPLL-NLKP 60 (64)
T ss_dssp EEECTTTSSEEEEEEE---EEETTT-TEEEEEETTTTEEE--EEEGG-GEEC
T ss_pred EEEECCCCCEEEEEEE---EEcCCC-CEEEEEEEecCCEE--EEeHH-HcEe
Confidence 4677899999999886 233322 38999999999874 46654 4443
No 99
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=93.73 E-value=0.16 Score=37.55 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=41.4
Q ss_pred CCCcccc----cccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCcccccccccccccC
Q 025634 177 PLEPSDC----HKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRLCCRP 248 (250)
Q Consensus 177 p~e~~eC----~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~c~~p 248 (250)
+|+++.+ ...++||.++|.- +. +..||-|+|.+|.... =.+.|.|..=++.+.|++.+|.--|
T Consensus 5 ~l~~~~~~e~~~~~kvGd~C~A~y-s~-Dg~wYRA~I~~i~~~~-------~~~~V~fvDYGN~e~V~~~~Lr~l~ 71 (77)
T 3pnw_C 5 ILESSIPMEYAKMWKPGDECFALY-WE-DNKFYRAEVEALHSSG-------MTAVVKFIDYGNYEEVLLSNIKPIQ 71 (77)
T ss_dssp ------CHHHHTTCCTTCEEEEEE-TT-TTEEEEEEEEEECTTS-------SEEEEEETTTCCEEEEEGGGEECC-
T ss_pred ccccccchhhcCCCCcCCEEEEEE-CC-CCCEEEEEEEEEeCCC-------CEEEEEEEcCCCeEEEeHHHeEECC
Confidence 4555555 4589999777633 33 4689999999997321 1457888887888999999886544
No 100
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=93.67 E-value=0.11 Score=39.68 Aligned_cols=52 Identities=27% Similarity=0.307 Sum_probs=39.7
Q ss_pred ccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCccccccccccc
Q 025634 185 KLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRLC 245 (250)
Q Consensus 185 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~c 245 (250)
..++||.+||.- .++..||.|+|.+|... . =.+.|.|..=++.|.|++.+|-
T Consensus 10 ~~kvGd~C~A~y--s~Dg~wYrA~I~~i~~~---~----~~~~V~fiDYGN~E~V~~~~Lr 61 (88)
T 1g5v_A 10 QWKVGDKCSAIW--SEDGCIYPATIASIDFK---R----ETCVVVYTGYGNREEQNLSDLL 61 (88)
T ss_dssp CCCSSCEEEEEC--TTTCCEEEEEEEEEETT---T----TEEEEEETTTCCEEEEEGGGCB
T ss_pred CCCCCCEEEEEE--CCCCCEEEEEEEEecCC---C----CEEEEEEecCCCEEEEcHHHcc
Confidence 578999777644 33568999999999642 1 2457899888888999999884
No 101
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.62 E-value=0.13 Score=38.09 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=40.4
Q ss_pred cccccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCcccccccccc
Q 025634 182 DCHKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRL 244 (250)
Q Consensus 182 eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~ 244 (250)
.....++||.|+|--. +.+||.|.|.+|... . ++.|.|..+ +.|.|+..+|
T Consensus 6 ~~~~~kvGd~clA~ws---Dg~~Y~A~I~~v~~~----~----~~~V~f~Dy-n~e~v~~~~l 56 (74)
T 2equ_A 6 SGFDFKAGEEVLARWT---DCRYYPAKIEAINKE----G----TFTVQFYDG-VIRCLKRMHI 56 (74)
T ss_dssp SCCCCCTTCEEEEECS---SSSEEEEEEEEESTT----S----SEEEEETTS-CEEEECGGGE
T ss_pred CCCCCCCCCEEEEECC---CCCEEEEEEEEECCC----C----EEEEEEecC-CeEEecHHHC
Confidence 3567899999998653 468999999999632 2 358999988 8888888877
No 102
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=93.59 E-value=0.16 Score=35.27 Aligned_cols=54 Identities=26% Similarity=0.291 Sum_probs=39.6
Q ss_pred ccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCccccccccccccc
Q 025634 185 KLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRLCCR 247 (250)
Q Consensus 185 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~c~~ 247 (250)
..++||.++|-- . ++..||.|+|.+|... . =.+.|.|..=++.|.|++.+|.--
T Consensus 3 ~~~~G~~c~A~~-s-~Dg~wYrA~I~~i~~~---~----~~~~V~f~DYGn~e~v~~~~Lr~~ 56 (59)
T 1mhn_A 3 QWKVGDKCSAIW-S-EDGCIYPATIASIDFK---R----ETCVVVYTGYGNREEQNLSDLLSP 56 (59)
T ss_dssp CCCTTCEEEEEC-T-TTSCEEEEEEEEEETT---T----TEEEEEETTTTEEEEEEGGGCBCT
T ss_pred cCCcCCEEEEEE-C-CCCCEEEEEEEEEcCC---C----CEEEEEEEcCCCEEEEcHHHeeCC
Confidence 578999777643 2 3467999999999632 1 256899988778899999988543
No 103
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=93.53 E-value=0.048 Score=44.89 Aligned_cols=55 Identities=20% Similarity=0.382 Sum_probs=38.3
Q ss_pred ecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceec---cccccccCCCCCcccccc
Q 025634 123 ARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNV---KNAVRERSVPLEPSDCHK 185 (250)
Q Consensus 123 Ars~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v---~~~~R~rS~p~e~~eC~~ 185 (250)
|+-+.||.||-+.+. .+...| .+.|.|..||+.+. +-++ ...| .++|.++.+|..
T Consensus 56 A~~~~d~~wyRa~I~---~~~~~~--~~~V~fvDyGn~~~-v~~lr~l~~~f--~~lP~qA~~c~L 113 (169)
T 3ntk_A 56 AQFPEDEVFYRAQIR---KVLDDG--KCEVHFIDFGNNAV-TQQFRQLPEEL--AKPARYSRHCEL 113 (169)
T ss_dssp EEETTTTEEEEEEEE---EECSTT--CEEEEETTTTEEEE-ESCEECCCHHH--HSSCCSSEEEEE
T ss_pred EEECCCCcEEEEEEE---EECCCC--EEEEEEEecCCeEE-hhhhhccCHHH--hhCCceeEEEEE
Confidence 444789999999886 333333 79999999999876 3222 2222 478999988865
No 104
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=93.39 E-value=0.069 Score=42.09 Aligned_cols=39 Identities=15% Similarity=0.338 Sum_probs=31.4
Q ss_pred CCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceec
Q 025634 127 KDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNV 167 (250)
Q Consensus 127 ~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v 167 (250)
.+|-||+..+. .=+. ..|+.+..|+|.||..--||||..
T Consensus 33 ~~~~~YeAkIl-~v~~-~~~~~~Y~VHY~GwNkR~DEWV~~ 71 (102)
T 2f5k_A 33 HGPLLYEAKCV-KVAI-KDKQVKYFIHYSGWNKNWDEWVPE 71 (102)
T ss_dssp SSSSEEEEEEE-EEEE-ETTEEEEEEEETTSCGGGCEEEEG
T ss_pred ECCEEEEEEEE-EEEE-cCCCcEEEEEeCCcCCCceeeccH
Confidence 38999999885 2222 356789999999999999999993
No 105
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=93.11 E-value=0.076 Score=39.25 Aligned_cols=40 Identities=23% Similarity=0.455 Sum_probs=35.1
Q ss_pred CceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 129 GAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 129 ~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
.--|.|.-.|.||+...|..+.+|+..||+.+++-|-+..
T Consensus 19 ~e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~ 58 (75)
T 2rsn_A 19 ADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQ 58 (75)
T ss_dssp GGCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGG
T ss_pred CceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHH
Confidence 3457899999999988888999999999999999998754
No 106
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=93.05 E-value=0.15 Score=36.70 Aligned_cols=45 Identities=27% Similarity=0.533 Sum_probs=32.5
Q ss_pred eeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 119 MEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 119 ~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
|-+||....+ -||...+. . ++..+..|+|+|.|.....|+|+++.
T Consensus 17 mkLEa~d~~~-p~~~AtV~---~-v~~~~~~~~VhfdGw~~~~D~W~~~d 61 (69)
T 3sd4_A 17 AQLEARDRLK-NWYPAHIE---D-IDYEEGKVLIHFKRWNHRYDEWFCWD 61 (69)
T ss_dssp CEEEEECTTS-CEEEEEEE---E-EETTTTEEEEEETTSCGGGCEEEETT
T ss_pred CEEEEEECCC-CccccEEE---E-EeccCCEEEEEeCCCCCCCCEEEcCC
Confidence 7889976654 47855553 1 11123489999999999999999865
No 107
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=93.00 E-value=0.093 Score=38.73 Aligned_cols=54 Identities=17% Similarity=0.275 Sum_probs=34.6
Q ss_pred ecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceecccccccc-CCCCCcccc
Q 025634 123 ARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVKNAVRER-SVPLEPSDC 183 (250)
Q Consensus 123 Ars~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~~~~R~r-S~p~e~~eC 183 (250)
|+-+.||.||...+. .+...+ ..+.|.|..||+.+. +++. .+|+. +-.+|+.-|
T Consensus 18 A~~s~Dg~wYRA~I~---~i~~~~-~~~~V~fiDYGN~e~--V~~~-~Lr~l~~~ll~~~~~ 72 (78)
T 2d9t_A 18 ALYWEDNKFYRAEVE---ALHSSG-MTAVVKFTDYGNYEE--VLLS-NIKPVQTEAWVRDPN 72 (78)
T ss_dssp EECTTTCCEEEEEEE---EECSSS-SEEEEEETTTTEEEE--EEGG-GEEECCCCCCCCCSS
T ss_pred EEECCCCCEEEEEEE---EEeCCC-CEEEEEEEcCCCeEE--EcHH-HeEeCCHHHhhhcCC
Confidence 666789999999986 222222 489999999998754 4444 34433 223444444
No 108
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=92.85 E-value=0.26 Score=33.50 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=36.3
Q ss_pred cccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCcccccccccc
Q 025634 186 LKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRL 244 (250)
Q Consensus 186 v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~ 244 (250)
.++||.++|.- .++..||-|+|.+|.... =.+.|.|..=++.|.|++.+|
T Consensus 2 wk~G~~c~A~~--s~Dg~wYrA~I~~i~~~~-------~~~~V~fvDYGn~e~v~~~~l 51 (54)
T 3s6w_A 2 WKPGDECFALY--WEDNKFYRAEVEALHSSG-------MTAVVKFIDYGNYEEVLLSNI 51 (54)
T ss_dssp CCTTCEEEEEE--TTTTEEEEEEEEEC--CC-------SEEEEEETTTCCEEEEEGGGE
T ss_pred CCCCCEEEEEE--CCCCCEEEEEEEEEeCCC-------CEEEEEEEccCCeEEEeHHHE
Confidence 36899888743 234589999999997421 245788988788899999887
No 109
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=91.91 E-value=0.17 Score=40.19 Aligned_cols=45 Identities=22% Similarity=0.478 Sum_probs=37.2
Q ss_pred ceeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceec
Q 025634 118 EMEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNV 167 (250)
Q Consensus 118 ~~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v 167 (250)
-|-+||...++-..+-|++.. +..+..|+|+|.|+.+..|.|+++
T Consensus 17 GMKLEAvD~~~p~~icvATV~-----~v~g~rl~v~fDGw~~~~D~W~~~ 61 (107)
T 1wjq_A 17 KMKLEVVDKRNPMFIRVATVA-----DTDDHRVKVHFDGWNNCYDYWIDA 61 (107)
T ss_dssp SCEEEEECTTCTTCEEEEEEE-----EECSSCEEEECSSSCGGGCEEECT
T ss_pred CCEEEEEcCCCCCcEEeEEEE-----EecCCEEEEEeCCCCCcCCEEEEC
Confidence 388999999998887788763 333458999999999999999884
No 110
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=91.65 E-value=0.3 Score=35.86 Aligned_cols=49 Identities=12% Similarity=0.308 Sum_probs=38.0
Q ss_pred cccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCcccccccccc
Q 025634 184 HKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRL 244 (250)
Q Consensus 184 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~ 244 (250)
.....||.|+|-= .+-+||.|.|.+|... +++.|.|+. +..+.|....|
T Consensus 5 ~~~~vGd~vmArW---~D~~yYpA~I~si~~~--------~~Y~V~F~d-G~~etvk~~~i 53 (67)
T 3p8d_A 5 SEFQINEQVLACW---SDCRFYPAKVTAVNKD--------GTYTVKFYD-GVVQTVKHIHV 53 (67)
T ss_dssp CCCCTTCEEEEEC---TTSCEEEEEEEEECTT--------SEEEEEETT-SCEEEEEGGGE
T ss_pred cccccCCEEEEEc---CCCCEeeEEEEEECCC--------CeEEEEEeC-CceEEEeHHHc
Confidence 4678999999875 4689999999999843 579999998 66666655544
No 111
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=90.50 E-value=0.04 Score=41.94 Aligned_cols=49 Identities=14% Similarity=0.367 Sum_probs=38.0
Q ss_pred cccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCcccccccccc
Q 025634 184 HKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRL 244 (250)
Q Consensus 184 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~ 244 (250)
...++||.|+|--. +..||.|.|.+|... + ++.|.|.. .+.|.|++.+|
T Consensus 5 ~~~kvGd~clAkws---Dg~wY~A~I~~v~~~-----~---~y~V~F~D-Gn~E~V~~s~L 53 (81)
T 2ldm_A 5 SEFQINEQVLASWS---DSRFYPAKVTAVNKD-----G---TYTVKFYD-GVVQTVKHIHV 53 (81)
Confidence 45789999998433 468999999999631 1 67899988 68888888776
No 112
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=90.47 E-value=0.32 Score=40.69 Aligned_cols=54 Identities=31% Similarity=0.522 Sum_probs=39.2
Q ss_pred ecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCccccee------ccccccccCCCCCcccccc
Q 025634 123 ARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVN------VKNAVRERSVPLEPSDCHK 185 (250)
Q Consensus 123 Ars~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~------v~~~~R~rS~p~e~~eC~~ 185 (250)
|+.+.||.||-+.+. .+.+.| .+.|.|..||+.+ .++ +...| .++|.|+.+|..
T Consensus 74 a~~~~d~~wyRa~V~---~~~~~~--~~~V~~vDyG~~~--~v~~~~l~~l~~~f--~~lP~qA~~c~L 133 (201)
T 4b9w_A 74 AFFSGDGNWYRALVK---EILPSG--NVKVHFVDYGNVE--EVTTDQLQAILPQF--LLLPFQGMQCWL 133 (201)
T ss_dssp EEETTTTEEEEEEEE---EECTTS--CEEEEETTTCCEE--EECGGGEEECCGGG--GSSCBCCEEEEE
T ss_pred EEECCCCeEEEEEEE---EECCCC--eEEEEEEccCCEE--EEEHHHhccChHhH--cccchhhEEEEE
Confidence 566899999998875 233333 7999999999874 444 33333 578999999986
No 113
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=90.33 E-value=0.44 Score=36.61 Aligned_cols=49 Identities=12% Similarity=0.297 Sum_probs=36.2
Q ss_pred ccccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCccccccccc
Q 025634 183 CHKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRR 243 (250)
Q Consensus 183 C~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~ 243 (250)
-.....||.|+|-= .+-+||.|.|.+|..- ++|+|.|+. +..+.|....
T Consensus 19 ~~~f~vGd~VlArW---~D~~yYPAkI~sV~~~--------~~YtV~F~D-G~~etvk~~~ 67 (85)
T 3qii_A 19 SSEFQINEQVLACW---SDCRFYPAKVTAVNKD--------GTYTVKFYD-GVVQTVKHIH 67 (85)
T ss_dssp --CCCTTCEEEEEC---TTSCEEEEEEEEECTT--------SEEEEEETT-SCEEEEEGGG
T ss_pred CcccccCCEEEEEe---CCCCEeeEEEEEECCC--------CeEEEEEeC-CCeEEecHHH
Confidence 35788999999866 4589999999999843 579999998 4444444433
No 114
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=90.06 E-value=0.36 Score=41.18 Aligned_cols=54 Identities=31% Similarity=0.522 Sum_probs=39.2
Q ss_pred ecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCccccee------ccccccccCCCCCcccccc
Q 025634 123 ARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVN------VKNAVRERSVPLEPSDCHK 185 (250)
Q Consensus 123 Ars~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~------v~~~~R~rS~p~e~~eC~~ 185 (250)
|+.+.||.||-+.+. .+...| ++.|.|..||+.+ .++ +...| .++|.|+.+|..
T Consensus 74 a~~~~d~~WyRa~V~---~~~~~~--~~~V~~vDyGn~~--~v~~~~l~~l~~~f--~~lP~qA~~c~L 133 (226)
T 4b9x_A 74 AFFSGDGNWYRALVK---EILPSG--NVKVHFVDYGNVE--EVTTDQLQAILPQF--LLLPFQGMQCWL 133 (226)
T ss_dssp EEETTTTEEEEEEEE---EECSSS--EEEEECTTTCCEE--EEEGGGEECCCGGG--SSSCBCCEEEEE
T ss_pred EEECCCCeEEEEEEE---EECCCC--eEEEEEEecCCEE--EEEHHHhccChHHH--cccccceEEEEE
Confidence 556889999998875 333333 7999999999874 444 33333 578999999985
No 115
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=89.78 E-value=0.59 Score=34.37 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=41.7
Q ss_pred cccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCcccccccccccccC
Q 025634 184 HKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRLCCRP 248 (250)
Q Consensus 184 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~c~~p 248 (250)
...++|++++|-- . ++..||-|+|++|... .=.+.|.|..=.+.|.|++..|.--|
T Consensus 8 ~~~~~G~~c~A~~-s-~Dg~wYRA~I~~i~~~-------~~~~~V~fiDYGN~e~V~~~~Lr~l~ 63 (78)
T 2d9t_A 8 KVWKPGDECFALY-W-EDNKFYRAEVEALHSS-------GMTAVVKFTDYGNYEEVLLSNIKPVQ 63 (78)
T ss_dssp CCCCTTCEEEEEC-T-TTCCEEEEEEEEECSS-------SSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred cCCCcCCEEEEEE-C-CCCCEEEEEEEEEeCC-------CCEEEEEEEcCCCeEEEcHHHeEeCC
Confidence 4578999987633 2 3468999999999632 12578999888889999999886544
No 116
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=89.39 E-value=0.29 Score=37.44 Aligned_cols=37 Identities=24% Similarity=0.548 Sum_probs=30.9
Q ss_pred eeeeeeheeeecc-cCcceEEEEecCCCC-Ccccceecc
Q 025634 132 YDVDMFLAHRFLD-CGEAEVRVRFVGFGA-DEDEWVNVK 168 (250)
Q Consensus 132 YdV~~fl~hR~~~-~ge~ev~Vrf~gFg~-eeDEw~~v~ 168 (250)
|.|...|.||+.. .|.++++|+..||++ +++-|-+..
T Consensus 31 y~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~ 69 (92)
T 2rso_A 31 YVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEA 69 (92)
T ss_dssp CCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGG
T ss_pred EEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHH
Confidence 6889999999974 578999999999996 777897643
No 117
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=89.07 E-value=0.69 Score=39.46 Aligned_cols=55 Identities=20% Similarity=0.448 Sum_probs=34.3
Q ss_pred ecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCccccee------ccccccccCCCCCcccccc
Q 025634 123 ARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVN------VKNAVRERSVPLEPSDCHK 185 (250)
Q Consensus 123 Ars~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~------v~~~~R~rS~p~e~~eC~~ 185 (250)
|+.+ ||.||-+.+. .+.+ ++ .+.|.|..||+.+ +++ +...|...++|.++.+|..
T Consensus 74 a~~~-d~~wyRa~V~---~~~~-~~-~~~V~~vDyGn~~--~v~~~~lr~l~~~~~~~~lp~~a~~~~L 134 (246)
T 2hqx_A 74 AKFV-DGEWYRARVE---KVES-PA-KIHVFYIDYGNRE--VLPSTRLGTLSPAFSTRVLPAQATEYAF 134 (246)
T ss_dssp EECT-TSCEEEEEEE---EEEE-TT-EEEEEETTTCCEE--EECGGGEECCCGGGSTTTSCCCC-----
T ss_pred EEcC-CCCEEEEEEE---EEcC-CC-eEEEEEEeCCCeE--EEeHHHhhcCCHhHcCCCCchhhhhhhh
Confidence 4445 9999999886 2322 33 8999999999965 333 3334443478999999953
No 118
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=88.62 E-value=0.44 Score=32.71 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=32.6
Q ss_pred eeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 131 WYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 131 WYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
=|.|.-.|.||+. .|.++..|+..||+.+++-|.+..
T Consensus 3 ~y~VE~Il~~r~~-~g~~~YlVKWkgy~~~~~TWEp~~ 39 (55)
T 1pfb_A 3 VYAAEKIIQKRVK-KGVVEYRVKWKGWNQRYNTWEPEV 39 (55)
T ss_dssp EEEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEEEe-CCeEEEEEEEcCCCCccCcEeEHH
Confidence 3789999999996 577899999999999999998754
No 119
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=88.43 E-value=1.5 Score=32.42 Aligned_cols=55 Identities=25% Similarity=0.268 Sum_probs=40.0
Q ss_pred ccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCC--cccccccccc
Q 025634 185 KLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDN--TEERVRLRRL 244 (250)
Q Consensus 185 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~--~ee~v~~~~~ 244 (250)
.+..|+.|+|+...+....+|+|.|++|... ...-.|.|-|.-=+ .-|=||.++|
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~-----~~~~~Y~VHY~gwnkr~DEWV~~~ri 61 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEID-----DGEVLYLVHYYGWNVRYDEWVKADRI 61 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEE-----TTEEEEEEEETTSCCSSCEEEEGGGE
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEcc-----CCceEEEEEeCCcCCCceEecChhhc
Confidence 5679999999987544568999999998753 23456888887655 3355666665
No 120
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=88.11 E-value=0.089 Score=39.96 Aligned_cols=37 Identities=22% Similarity=0.495 Sum_probs=28.8
Q ss_pred CCceeeeeeeheeeecccCcceEEEEecCCCCCccccee
Q 025634 128 DGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVN 166 (250)
Q Consensus 128 D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~ 166 (250)
++-||...+. .=+. ..|+.+..|||.||..--||||.
T Consensus 24 ~~~~y~AkIl-~i~~-~~~~~~YyVHY~GwNkR~DEWV~ 60 (85)
T 2lrq_A 24 GPLIYEAKVL-KTKP-DATPVEYYIHYAGWSKNWDEWVP 60 (85)
Confidence 5678887774 2233 34567999999999999999998
No 121
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.36 E-value=0.53 Score=35.04 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 20 LEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 20 l~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
.+-|+.-|.+| +.|..+..++|+.+-.+|. .||+.||--|-
T Consensus 18 ~e~L~~Yy~~h--k~L~EeDl~~L~~kskms~----------qqvkdwFa~k~ 58 (70)
T 2ys9_A 18 IQPLERYWAAH--QQLRETDIPQLSQASRLST----------QQVLDWFDSRL 58 (70)
T ss_dssp CHHHHHHHHHT--CCCCTTHHHHHHHHTTCCH----------HHHHHHHHHHS
T ss_pred chHHHHHHHHh--cccchhhHHHHHHHhCCCH----------HHHHHHHHhcc
Confidence 46789999996 5899999999999999997 89999998874
No 122
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=87.98 E-value=0.5 Score=33.00 Aligned_cols=36 Identities=28% Similarity=0.601 Sum_probs=31.9
Q ss_pred eeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 132 YDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 132 YdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
|.|.-.|.||+. .|.++..|+..||+.+++-|-+..
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~ 39 (59)
T 3fdt_A 4 YVVEKVLDRRVV-KGQVEYLLKWKGFSEEHNTWEPEK 39 (59)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEEe-CCeEEEEEEEeCCCcccCCccchh
Confidence 788999999987 588999999999999999997744
No 123
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=87.89 E-value=0.52 Score=32.27 Aligned_cols=36 Identities=19% Similarity=0.514 Sum_probs=32.0
Q ss_pred eeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 132 YDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 132 YdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
|.|.-.|.||+. .|.++..|+..||+.+++-|-+..
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~ 39 (54)
T 3h91_A 4 FAAECILSKRLR-KGKLEYLVKWRGWSSKHNSWEPEE 39 (54)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred eEEEEEEEEEEe-CCcEEEEEEEeCCCCcCCCeecHh
Confidence 789999999996 588999999999999999998744
No 124
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=87.64 E-value=0.55 Score=32.08 Aligned_cols=36 Identities=19% Similarity=0.443 Sum_probs=32.0
Q ss_pred eeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 132 YDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 132 YdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
|.|...|.||+. .|.++..|+..||+.+++-|-+..
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~ 39 (54)
T 3i91_A 4 FAAEALLKRRIR-KGRMEYLVKWKGWSQKYSTWEPEE 39 (54)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEEe-CCcEEEEEEEeCCCcccCcccchh
Confidence 789999999996 488999999999999999998754
No 125
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=87.63 E-value=0.5 Score=34.48 Aligned_cols=41 Identities=20% Similarity=0.457 Sum_probs=33.5
Q ss_pred CCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 127 KDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 127 ~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
.+...|.|.-.|.+|+.. |.++..|+..||+.+++-|-+..
T Consensus 12 ~~~~ey~VEkIld~R~~~-g~~eYlVKWkGy~~~~~TWEp~e 52 (69)
T 1q3l_A 12 EEEEEYAVEKIIDRRVRK-GMVEYYLKWKGYPETENTWEPEN 52 (69)
T ss_dssp ----CEEEEEEEEEEEET-TEEEEEEEETTSCGGGCEEEEGG
T ss_pred cCCCcEEEEEEEEEEEEC-CeEEEEEEEcCCCcccCCccchH
Confidence 456789999999999964 77899999999999999998754
No 126
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=87.48 E-value=0.45 Score=32.74 Aligned_cols=36 Identities=25% Similarity=0.626 Sum_probs=31.9
Q ss_pred eeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 132 YDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 132 YdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
|.|.-.|.||+.. |.++..|+..||+.+++-|-+..
T Consensus 3 y~VE~Il~~r~~~-g~~~YlVkWkGy~~~~~TWEp~~ 38 (55)
T 3f2u_A 3 YVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEE 38 (55)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEEeC-CeEEEEEEEEeCCCccCCeeEHH
Confidence 6788899999975 88999999999999999998754
No 127
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=86.98 E-value=2 Score=33.73 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=38.3
Q ss_pred ccccCceEEEEee-eCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCC--cccccccccc
Q 025634 185 KLKVGGHVLCFQE-RRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDN--TEERVRLRRL 244 (250)
Q Consensus 185 ~v~~G~~v~cf~~-~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~--~ee~v~~~~~ 244 (250)
.+.+|+.|+||+. .....+.|+|.|++|.-..=....-.=.|+|-|.-=+ ..|-||-++|
T Consensus 19 ~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRi 81 (101)
T 3m9q_A 19 LFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVL 81 (101)
T ss_dssp CCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGE
T ss_pred cccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHc
Confidence 4679999999994 2334567999999998643222222334778885433 2355666655
No 128
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=86.83 E-value=1.9 Score=34.44 Aligned_cols=59 Identities=24% Similarity=0.399 Sum_probs=38.9
Q ss_pred ccccCceEEEEeee-CCcceeEeeEEeeeeeccCCC-CceeeEEEEEEecCC--cccccccccc
Q 025634 185 KLKVGGHVLCFQER-RDQGIHYDAHIAEIHRRMHDI-RGCRCLFLVRYNHDN--TEERVRLRRL 244 (250)
Q Consensus 185 ~v~~G~~v~cf~~~-~~~~~yyDA~V~~v~r~~Hd~-~~C~C~F~Vr~~h~~--~ee~v~~~~~ 244 (250)
.+..|+.|+||..+ ....++|+|.|++|....-+. ++- -.++|-|.-=+ ..|-||-++|
T Consensus 19 ~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~-~~Y~VHY~GWn~~wDEWV~e~rl 81 (110)
T 3m9p_A 19 KFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKI-PEYLIHFNGWNRSWDRWAAEDHV 81 (110)
T ss_dssp CSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEE-EEEEEEETTSCGGGCEEEEGGGE
T ss_pred cccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccc-eEEEEEECCCCcchhhccCHhhh
Confidence 47799999999742 344678999999998654221 222 35778885333 3355766665
No 129
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=86.61 E-value=1.4 Score=32.58 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=39.8
Q ss_pred cccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCcccccccccccccC
Q 025634 184 HKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRLCCRP 248 (250)
Q Consensus 184 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~c~~p 248 (250)
..+++|+++++.- .++..||-|.|++|... . .+.|.|..=++.+.|++.+|..-|
T Consensus 26 ~~~~~G~~c~a~~--~~d~~wyRA~I~~~~~~----~----~~~V~fvDyGn~e~v~~~~lr~l~ 80 (94)
T 3fdr_A 26 LTVHVGDIVAAPL--PTNGSWYRARVLGTLEN----G----NLDLYFVDFGDNGDCPLKDLRALR 80 (94)
T ss_dssp CCCCTTCEEEEEE--TTTTEEEEEEEEEECTT----S----CEEEEETTTCCEEEECGGGCEECC
T ss_pred CCCCCCCEEEEEE--CCCCeEEEEEEEEECCC----C----eEEEEEEcCCCeEEEEHHHhhhcC
Confidence 4678999887633 23578999999999621 2 356777777788889998886443
No 130
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=86.35 E-value=0.64 Score=37.54 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=37.0
Q ss_pred eeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCC--Ccccceecc
Q 025634 119 MEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGA--DEDEWVNVK 168 (250)
Q Consensus 119 ~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~--eeDEw~~v~ 168 (250)
|-+||...++-..|=|++.+ +.-+..|+|||.|+.+ .+|-|+++.
T Consensus 16 mKLEa~D~~~p~~~~vAtV~-----~v~g~rl~l~~dG~~~~~~~D~W~~~~ 62 (127)
T 1wjr_A 16 SLIELQDSQNPFQYWIVSVI-----ENVGGRLRLRYVGLEDTESYDQWLFYL 62 (127)
T ss_dssp CEEEEECSSCSSCEEEEECC-----CEETTEEEECBTTCSSCCSSCEEEETT
T ss_pred CEeEEecCCCCCcEEEEEEe-----eeeCCEEEEEecCCCCCCCCCEeEeCC
Confidence 78899999999999999874 2222489999999999 579999953
No 131
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=86.29 E-value=0.93 Score=31.85 Aligned_cols=40 Identities=23% Similarity=0.469 Sum_probs=33.0
Q ss_pred CCceeeeeeeheeeecccCcc-eEEEEecCCCCCcccceecc
Q 025634 128 DGAWYDVDMFLAHRFLDCGEA-EVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 128 D~AWYdV~~fl~hR~~~~ge~-ev~Vrf~gFg~eeDEw~~v~ 168 (250)
|..=|.|.-.|.||+.. |.. +..|+..||+.+++-|-+..
T Consensus 4 ~~~ey~VE~Il~~r~~~-g~~~~YlVkWkGy~~~~~TWEp~~ 44 (61)
T 3g7l_A 4 DADVYEVEDILADRVNK-NGINEYYIKWAGYDWYDNTWEPEQ 44 (61)
T ss_dssp -CCEEEEEEEEEEEECT-TSCEEEEEEETTSCGGGCEEEEGG
T ss_pred CCcEEEEEEEEEEEEEC-CCEEEEEEEEeCCCCcCCceeeHh
Confidence 34458899999999976 555 99999999999999997754
No 132
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=85.71 E-value=1.6 Score=34.28 Aligned_cols=51 Identities=25% Similarity=0.481 Sum_probs=37.4
Q ss_pred ccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCC--cccccccccc
Q 025634 185 KLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDN--TEERVRLRRL 244 (250)
Q Consensus 185 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~--~ee~v~~~~~ 244 (250)
.+..|+.|+|+. +..+|+|.|++|... ...-.|.|-|.-=+ .-|-||.++|
T Consensus 22 ~f~vGekVl~~~----~~~~YeAkIl~v~~~-----~~~~~Y~VHY~GwNkR~DEWV~~~Rl 74 (102)
T 2f5k_A 22 KFQEGERVLCFH----GPLLYEAKCVKVAIK-----DKQVKYFIHYSGWNKNWDEWVPESRV 74 (102)
T ss_dssp SCCTTCEEEEES----SSSEEEEEEEEEEEE-----TTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred ccCCCCEEEEEE----CCEEEEEEEEEEEEc-----CCCcEEEEEeCCcCCCceeeccHhhc
Confidence 578999999998 246899999999853 23346889988655 3355666555
No 133
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=85.49 E-value=0.4 Score=35.30 Aligned_cols=39 Identities=26% Similarity=0.565 Sum_probs=33.7
Q ss_pred ceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 130 AWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 130 AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
.-|.|.-.|.||+...|.++.+|+..||+.+++-|.+..
T Consensus 12 ~~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~ 50 (78)
T 2dnt_A 12 ELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQ 50 (78)
T ss_dssp CSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETT
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHH
Confidence 346888899999987788999999999999999998743
No 134
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=85.41 E-value=0.88 Score=33.45 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=33.8
Q ss_pred CceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 129 GAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 129 ~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
..-|.|.-.|.+|+. .|.++..|+..||+.+++-|.+..
T Consensus 18 ~~eyeVEkIld~r~~-~g~~~YlVKWkGy~~~~nTWEP~e 56 (72)
T 1pdq_A 18 DLVYAAEKIIQKRVK-KGVVEYRVKWKGWNQRYNTWEPEV 56 (72)
T ss_dssp CEEEEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred CceEEEEEEEEEEEe-CCcEEEEEEECCCCCccCeecchH
Confidence 446789999999985 477899999999999999998764
No 135
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=85.26 E-value=0.66 Score=32.66 Aligned_cols=36 Identities=25% Similarity=0.551 Sum_probs=31.7
Q ss_pred eeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 132 YDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 132 YdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
|.|.-.|.||+. .|.++..|+..||+.+++-|-+..
T Consensus 5 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~ 40 (62)
T 3lwe_A 5 FEVEKILDMKTE-GGKVLYKVRWKGYTSDDDTWEPEI 40 (62)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEHH
T ss_pred EEEEEEEEEEEc-CCeEEEEEEEeCCCCcCCCeeeHh
Confidence 788999999985 588999999999999999998743
No 136
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=84.55 E-value=0.61 Score=33.55 Aligned_cols=39 Identities=18% Similarity=0.506 Sum_probs=33.8
Q ss_pred ceeeeeeeheeeecccCcce-EEEEecCCCCCcccceecc
Q 025634 130 AWYDVDMFLAHRFLDCGEAE-VRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 130 AWYdV~~fl~hR~~~~ge~e-v~Vrf~gFg~eeDEw~~v~ 168 (250)
.=|.|.-.|.||+...|.++ ..|+..||+.+++-|-+..
T Consensus 7 ~ey~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~e 46 (70)
T 1g6z_A 7 EEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPE 46 (70)
T ss_dssp CSSCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGG
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHH
Confidence 34689999999998768788 9999999999999998754
No 137
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=83.23 E-value=1.1 Score=32.52 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=33.9
Q ss_pred CCceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 128 DGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 128 D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
+..=|.|.-.|.||+. .|.++..|+..||+.+++-|.+..
T Consensus 10 ~~~~y~VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~ 49 (74)
T 2kvm_A 10 GEQVFAVESIRKKRVR-KGKVEYLVKWKGWPPKYSTWEPEE 49 (74)
T ss_dssp CCCCCCEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEETT
T ss_pred CCccEEEEEEEEEEEe-CCcEEEEEEEcCCCCccCeEeeHH
Confidence 3445799999999986 477899999999999999998754
No 138
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=83.18 E-value=1.2 Score=32.40 Aligned_cols=37 Identities=24% Similarity=0.571 Sum_probs=32.2
Q ss_pred eeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 131 WYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 131 WYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
=|.|.-.|.||+.. |.++..|+..||+.+++-|.+..
T Consensus 13 ey~VE~Il~~r~~~-g~~~YlVKWkGy~~~~~TWEp~~ 49 (73)
T 1ap0_A 13 EYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEE 49 (73)
T ss_dssp CCEEEEEEEEEECS-SSEEEEEEEESSSSCCCEEEETT
T ss_pred eEEEEEEEEEEEeC-CeEEEEEEECCCCCccCcEeeHH
Confidence 46889999999864 77899999999999999998754
No 139
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.45 E-value=1.4 Score=32.01 Aligned_cols=39 Identities=18% Similarity=0.472 Sum_probs=33.1
Q ss_pred CceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 129 GAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 129 ~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
..=|.|.-.|.||+.. |.++..|+..||+.+++-|.+..
T Consensus 8 ~~ey~VE~Il~~r~~~-g~~~YlVKWkGy~~~~~TWEp~~ 46 (74)
T 2d9u_A 8 EQVFAAECILSKRLRK-GKLEYLVKWRGWSSKHNSWEPEE 46 (74)
T ss_dssp CCCCCEEEEEEEEEET-TEEEEEEEETTSCTTTCEEEEGG
T ss_pred CccEEEEEEEEEEEeC-CcEEEEEEECCCCCccCccccHH
Confidence 3446899999999975 77899999999999999998743
No 140
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=81.99 E-value=4.4 Score=31.56 Aligned_cols=52 Identities=8% Similarity=0.174 Sum_probs=41.1
Q ss_pred CCccCCHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhh
Q 025634 11 VFTGFTKTELEKMEKLLME---SKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
.+..+|++||++|.++|.. .++.+++..+...+-.+++..+ +..+++..+.+
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~--------~~~~~~~~~~~ 60 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP--------PDDELNAMLKE 60 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC--------CHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc--------cHHHHHHHHHh
Confidence 4678999999999999986 3678999999999999998876 34556655543
No 141
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=81.09 E-value=1.3 Score=34.70 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=31.0
Q ss_pred eeEEecccCCCceeeeeeeheeeec----ccCcceEEEEecCCCCCcccceec
Q 025634 119 MEFEARSSKDGAWYDVDMFLAHRFL----DCGEAEVRVRFVGFGADEDEWVNV 167 (250)
Q Consensus 119 ~efEArs~~D~AWYdV~~fl~hR~~----~~ge~ev~Vrf~gFg~eeDEw~~v 167 (250)
+-|.--.++.+-||+..+.= =+.- ..|.....|+|.|+..--||||.-
T Consensus 27 Lc~h~d~~kg~~lYeAKIl~-v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~e 78 (101)
T 3m9q_A 27 LCYEPDKSKARVLYTSKVLN-VFERRNEHGLRFYEYKIHFQGWRPSYDRAVRA 78 (101)
T ss_dssp EEECCCTTSCCCEEEEEEEE-EEEEECTTSCEEEEEEEEETTSCGGGCEEECG
T ss_pred EEEecCCCCCCcceEeEEEE-EEecCCccccCceEEEEEeCCCCcCceeecCH
Confidence 45532123346788866642 1111 134578999999999999999983
No 142
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=80.74 E-value=0.95 Score=33.32 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=32.0
Q ss_pred eeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 131 WYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 131 WYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
=|.|.-.|.+|+. .|.++..|+..||+.+++-|.+..
T Consensus 21 eyeVEkIld~r~~-~g~~~YlVKWkGy~~~~~TWEp~e 57 (73)
T 2k1b_A 21 VFAVESIRKKRVR-KGKVEYLVKWKGWPPKYSTWEPEE 57 (73)
T ss_dssp CCCCSEEEEEEEE-TTEEEEEEECTTCCGGGCCEEETT
T ss_pred eEEEEEEEEEEEc-CCcEEEEEEECCCCcccCeecchH
Confidence 4688999999986 477899999999999999998754
No 143
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=79.73 E-value=1.8 Score=35.68 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=36.1
Q ss_pred ecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceeccccccc-----cCCCCCcccccc
Q 025634 123 ARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVKNAVRE-----RSVPLEPSDCHK 185 (250)
Q Consensus 123 Ars~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~~~~R~-----rS~p~e~~eC~~ 185 (250)
|+-+.||.||-+.+. .+.+ ..+.|.|..||+.+. +++. .+|+ .++|.++.+|..
T Consensus 60 a~~~~d~~wyRa~V~---~v~~---~~~~V~~vDyG~~~~--v~~~-~l~~l~~~~~~~p~~a~~~~L 118 (218)
T 2wac_A 60 AQFTLDNQWYRAKVE---RVQG---SNATVLYIDYGNKET--LPTN-RLAALPPAFSSEKPYATEYAL 118 (218)
T ss_dssp EECTTTCCEEEEEEE---EEET---TEEEEEETTTCCEEE--EEGG-GEEECCGGGSSSCCSEEEEEE
T ss_pred EEECCCCeEEEEEEE---EecC---CeEEEEEEecCCeEE--EchH-HcccCChhhccCCcceeEEEE
Confidence 444679999999886 2322 489999999998753 4322 2222 357777777754
No 144
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=79.55 E-value=3.9 Score=33.09 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=36.2
Q ss_pred ccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCC--cccccccccc
Q 025634 185 KLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDN--TEERVRLRRL 244 (250)
Q Consensus 185 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~--~ee~v~~~~~ 244 (250)
.+..|+.|+|+.. +-.+|.|.|++|....- .+ .-.|.|-|.-=+ .-|=|+..+|
T Consensus 12 ~~~vGe~v~~~~~---d~~~y~AkIl~i~~~~~--~~-~~~YyVHY~gwNkR~DEWV~~~ri 67 (133)
T 1wgs_A 12 TVEIGETYLCRRP---DSTWHSAEVIQSRVNDQ--EG-REEFYVHYVGFNRRLDEWVDKNRL 67 (133)
T ss_dssp CCCTTSEEEEEET---TTEEEEEEEEEEEEETT--TT-EEEEEEECTTTCSSCCEEECTTTS
T ss_pred ccCCCCEEEEEeC---CCCEEEEEEEEEEeccC--CC-ceEEEEeccCcCCCceeecChhhc
Confidence 4789999999984 34899999999886431 12 346888887544 2233444443
No 145
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.88 E-value=3.8 Score=31.15 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=38.6
Q ss_pred cccccCceEEEEee-eCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCC--cccccccccc
Q 025634 184 HKLKVGGHVLCFQE-RRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDN--TEERVRLRRL 244 (250)
Q Consensus 184 ~~v~~G~~v~cf~~-~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~--~ee~v~~~~~ 244 (250)
..+.+|+.|+|++. ...+-.+|.|.|++|.... ..-.|.|-|..-+ .-|=|+.++|
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~-----~~~~YyVHY~g~NkRlDEWV~~~rl 66 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDIS-----GRKLFYVHYIDFNRRLDEWVTHERL 66 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECCSS-----SCCCEEEEECSSCSCCCEEECTTTB
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcC-----CCcEEEEEeCCCCcccccccCHhHc
Confidence 35789999999985 3345689999999988532 2235889888776 2234555444
No 146
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=78.47 E-value=6.4 Score=29.30 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=37.9
Q ss_pred CCCCccCCHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhh
Q 025634 9 RSVFTGFTKTELEKMEKLLME---SKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 9 Rr~Rt~FT~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
......||++|+.+|.++|.. .++.+++..+...+-..++... ...+++..|++
T Consensus 6 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~--------~~~~~~~~~~~ 62 (156)
T 1wdc_B 6 SGVLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAP--------DDKELTAMLKE 62 (156)
T ss_dssp ------CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCC--------CHHHHHHHHTT
T ss_pred cchhccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCC--------CHHHHHHHHHh
Confidence 335778999999999999975 3577999999988888887653 34567777753
No 147
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=78.32 E-value=2.1 Score=30.25 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=39.4
Q ss_pred CCccCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhh
Q 025634 11 VFTGFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
.-..++.+++.+|..+|... ++.+++..+...+...+++++ .+|+.+|+.
T Consensus 17 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~----------~~~~~~~~~ 69 (91)
T 2pmy_A 17 QGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRP----------ADAEAVFQR 69 (91)
T ss_dssp --CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCH----------HHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCH----------HHHHHHHHH
Confidence 35678999999999999863 567999999998888888765 778877763
No 148
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=78.21 E-value=1.6 Score=30.82 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=32.6
Q ss_pred ceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 130 AWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 130 AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
.=|.|.-.|.||+. .|.++..|+..||+.+++-|-+..
T Consensus 9 ~ey~VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~ 46 (64)
T 2dnv_A 9 RVFAAEALLKRRIR-KGRMEYLVKWKGWSQKYSTWEPEE 46 (64)
T ss_dssp CCCCCCCEEEEEES-SSSEEEEECCSSCCCSSCCEEETT
T ss_pred ceEEEEEEEEEEEe-CCcEEEEEEECCCCcccCCccCHh
Confidence 34688899999986 577899999999999999998754
No 149
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=77.78 E-value=2.5 Score=40.74 Aligned_cols=57 Identities=21% Similarity=0.428 Sum_probs=39.5
Q ss_pred ecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcc----cceeccccccccCCCCCcccccc
Q 025634 123 ARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADED----EWVNVKNAVRERSVPLEPSDCHK 185 (250)
Q Consensus 123 Ars~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeD----Ew~~v~~~~R~rS~p~e~~eC~~ 185 (250)
|+.. ||.||-+.+. .+.. +..+.|.|..||+.+. +...+...|....+|.|+.+|..
T Consensus 420 a~~~-d~~wyRa~I~---~v~~--~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~L 480 (570)
T 3bdl_A 420 AKFV-DGEWYRARVE---KVES--PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAF 480 (570)
T ss_dssp EECT-TSCEEEEEEE---EEEE--TTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEE
T ss_pred EEEC-CCCEEEEEEE---EEcC--CCeEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEE
Confidence 4445 9999999986 2333 2389999999999853 22224445554456999999974
No 150
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=77.69 E-value=2.5 Score=32.12 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=38.9
Q ss_pred ccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCcccccccccccccC
Q 025634 185 KLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRLCCRP 248 (250)
Q Consensus 185 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~c~~p 248 (250)
.+.+|+++++.- .++..||-|.|++|... . .+.|.|..=.+.+.|++.+|..-|
T Consensus 32 ~~~~G~~c~a~~--~~d~~wyRA~V~~~~~~----~----~~~V~fvDyGn~e~v~~~~Lr~l~ 85 (110)
T 2diq_A 32 TVHVGDIVAAPL--PTNGSWYRARVLGTLEN----G----NLDLYFVDFGDNGDCPLKDLRALR 85 (110)
T ss_dssp CCCTTCEEEECC--TTTCSCEEEEECCCCSS----S----CEEEEETTTCCEEEECGGGCEECC
T ss_pred CCCCCCEEEEEE--CCCCeEEEEEEEEECCC----C----eEEEEEEeCCCeEEEehHHhhcCc
Confidence 577999877632 23468999999998731 2 456888777788889988886433
No 151
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=76.62 E-value=2.6 Score=34.17 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=32.1
Q ss_pred eeEEecccCCC----ceeeeeeeheeeecccCcceEEEEecCCCCCcccceecccccccc
Q 025634 119 MEFEARSSKDG----AWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVKNAVRER 174 (250)
Q Consensus 119 ~efEArs~~D~----AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~~~~R~r 174 (250)
.+=|+-+..++ .||-..+- --.|+ -..|.|.||++..+||+++. ++|+.
T Consensus 65 d~VEV~~~~~d~ep~gWw~a~I~-----~~kg~-f~~V~y~~~~~~~~EiV~~~-rlR~~ 117 (128)
T 3h8z_A 65 DEVEVYSRANEQEPCGWWLARVR-----MMKGD-FYVIEYAACDATYNEIVTLE-RLRPV 117 (128)
T ss_dssp CEEEEEECC---CCCEEEEEEEE-----EEETT-EEEEEETTC----CEEECGG-GEEEC
T ss_pred CEEEEEecCCCCCcCccEEEEEE-----EeeCC-EEEEEEcCCCCCcceEEehh-heEeC
Confidence 34455666666 89998885 22476 78999999999999999955 77764
No 152
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=76.12 E-value=6.5 Score=30.10 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=37.8
Q ss_pred ccccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCC--cccccccccc
Q 025634 183 CHKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDN--TEERVRLRRL 244 (250)
Q Consensus 183 C~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~--~ee~v~~~~~ 244 (250)
-..+..|+.|+|++ +..+|.|.|++|.... + .=.|.|-|..=| .-|=|+.++|
T Consensus 21 ~~~~~vG~kv~v~~----~~~~y~AkIl~ir~~~----~-~~~YyVHY~g~NkRlDEWV~~~rl 75 (92)
T 2ro0_A 21 VDDIIIKCQCWVQK----NDEERLAEILSINTRK----A-PPKFYVHYVNYNKRLDEWITTDRI 75 (92)
T ss_dssp TTSCCTTCEEEEEE----TTEEEEEEEEEEECSS----S-SCEEEEEETTSCTTSCEEEEGGGE
T ss_pred cccccCCCEEEEEE----CCEEEEEEEEEEEEcC----C-CcEEEEEeCCcCcccccccCHhHc
Confidence 34688999999996 3589999999998542 2 246889888776 2344555554
No 153
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=76.08 E-value=2.5 Score=30.09 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=29.0
Q ss_pred eeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 134 VDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 134 V~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
|.-.|.||+. .|.++..|+..||+.+++-|-+..
T Consensus 3 VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~ 36 (64)
T 3mts_A 3 VEYLCDYKKI-REQEYYLVKWRGYPDSESTWEPRQ 36 (64)
T ss_dssp EEEEEEEEEC-SSCEEEEEEETTSCGGGCEEEEGG
T ss_pred ceEEEEEEEe-CCeEEEEEEEecCCCcCCcEeEHH
Confidence 6667889986 488999999999999999998753
No 154
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=74.73 E-value=2.5 Score=34.79 Aligned_cols=26 Identities=35% Similarity=0.690 Sum_probs=22.2
Q ss_pred ccccCceEEEEeeeCCcceeEeeEEeeeee
Q 025634 185 KLKVGGHVLCFQERRDQGIHYDAHIAEIHR 214 (250)
Q Consensus 185 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r 214 (250)
.+.+|+.||||+ .-++|+|.|+.|..
T Consensus 9 ~f~~gekvl~~h----g~llYeAKVl~v~~ 34 (136)
T 2k3y_A 9 EFALGGRVLAFH----GPLMYEAKILKIWD 34 (136)
T ss_dssp SCCTTSEEEEEC----SSCEEEEEEEEEEE
T ss_pred ccCCCCEEEEEE----CCeeEEEEEEEEEe
Confidence 577999999999 24589999999986
No 155
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=74.67 E-value=5.6 Score=26.64 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=31.8
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhh
Q 025634 12 FTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
+..||++.-.++...+.. +. ....-..++|.+||+++ .+|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~--g~-s~~~~~~~vA~~~gIs~----------~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN--DN-DCKGNQRATARKYNIHR----------RQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH--CT-TTTTCHHHHHHHTTSCH----------HHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc--CC-CcchHHHHHHHHHCcCH----------HHHHHHHHH
Confidence 357999888887555544 22 11112579999999997 899999653
No 156
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=74.38 E-value=2.2 Score=34.02 Aligned_cols=48 Identities=23% Similarity=0.379 Sum_probs=31.8
Q ss_pred ceeEEecccCCCceeeeeeeheeeecc--cC--cceEEEEecCCCCCccccee
Q 025634 118 EMEFEARSSKDGAWYDVDMFLAHRFLD--CG--EAEVRVRFVGFGADEDEWVN 166 (250)
Q Consensus 118 ~~efEArs~~D~AWYdV~~fl~hR~~~--~g--e~ev~Vrf~gFg~eeDEw~~ 166 (250)
.+-|..-.++..-||+..+. .=+.-+ .| .....|+|.|+..--||||.
T Consensus 26 VLc~hgd~~k~~~lYeAKIl-~v~~~~~~~g~~~~~Y~VHY~GWn~~wDEWV~ 77 (110)
T 3m9p_A 26 VLCFEPDPTKARVLYDAKIV-DVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAA 77 (110)
T ss_dssp EEEECSCTTSCCCEEEEEEE-EEEEEECTTCCEEEEEEEEETTSCGGGCEEEE
T ss_pred EEEEcCCCCCCCCceeeEEE-EEEeccCcccccceEEEEEECCCCcchhhccC
Confidence 35563322334689998775 222221 12 26899999999999999997
No 157
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=72.66 E-value=4.5 Score=29.17 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHhCCCC
Q 025634 15 FTKTELEKMEKLLME---SKDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 15 FT~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~f~lS~ 51 (250)
+|++|+.+++++|.. .++.+++..+...+-.+++++.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~ 43 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPS 43 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCH
Confidence 688999999999976 3568899988888877777764
No 158
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=72.23 E-value=10 Score=25.79 Aligned_cols=51 Identities=6% Similarity=0.000 Sum_probs=39.5
Q ss_pred CCccCCHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhH---HHHHHh
Q 025634 11 VFTGFTKTELEKMEKLLME---SKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTE---VQSWFQ 69 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~Q---Vk~WFQ 69 (250)
....+|++|+.+|.++|.. .++.+++..+...+-..++... +..+ |+.+|+
T Consensus 4 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~--------~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 4 KARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTY--------TKRETEAIMKEAR 60 (86)
T ss_dssp CCCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCC--------SHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCC--------CHHHHHHHHHHHH
Confidence 3456899999999999975 4567999999988888887542 4467 777775
No 159
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=72.10 E-value=7.3 Score=28.73 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=41.3
Q ss_pred CCccCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHh
Q 025634 11 VFTGFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQ 69 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQ 69 (250)
....+|.+|+.+|.++|... ++.+++..+...+-..+|... +..+|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~--------~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMP--------NEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCC--------CTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 45679999999999999874 678999999999888887542 3477888776
No 160
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=71.80 E-value=9.5 Score=28.56 Aligned_cols=45 Identities=7% Similarity=0.082 Sum_probs=32.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCC
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 51 (250)
...+.+..+|++|+.+|+++|... ++.+++..+...+...++...
T Consensus 14 ~~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~ 61 (169)
T 3qrx_A 14 DQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEP 61 (169)
T ss_dssp ------CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 344568899999999999999874 567899988888888887643
No 161
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.77 E-value=3.4 Score=30.45 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=22.9
Q ss_pred EecccCCCceeeeeeeheeeecccCcceEEEEecCC
Q 025634 122 EARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGF 157 (250)
Q Consensus 122 EArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gF 157 (250)
.|+-+ ||.||...+. .+...| .+.|.|.++
T Consensus 17 lA~ws-Dg~~Y~A~I~---~v~~~~--~~~V~f~Dy 46 (74)
T 2equ_A 17 LARWT-DCRYYPAKIE---AINKEG--TFTVQFYDG 46 (74)
T ss_dssp EEECS-SSSEEEEEEE---EESTTS--SEEEEETTS
T ss_pred EEECC-CCCEEEEEEE---EECCCC--EEEEEEecC
Confidence 46767 9999999986 233333 789999998
No 162
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=71.21 E-value=4.4 Score=32.23 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=34.1
Q ss_pred CccCCHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHhCCCC
Q 025634 12 FTGFTKTELEKMEKLLME---SKDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~f~lS~ 51 (250)
.+.||++||++|.++|.. .++.+++..+...+-..++..+
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 467999999999999986 3678999999888888888765
No 163
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=70.63 E-value=7.1 Score=29.40 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=36.5
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcc
Q 025634 11 VFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQ 73 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~ 73 (250)
.|..||.++-.++=+.+.+++ .+. ..+||+.||+|. ..|..|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g--~~~---~~~~A~~~gvs~----------stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENP--DLR---KGEIARRFNIPP----------STLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCT--TSC---HHHHHHHHTCCH----------HHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCC--CCc---HHHHHHHhCCCH----------HHHHHHHhchhh
Confidence 567899999988877775532 332 247999999997 889999988754
No 164
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=70.13 E-value=7.2 Score=30.15 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=36.9
Q ss_pred cccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCC--cccccccccc
Q 025634 184 HKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDN--TEERVRLRRL 244 (250)
Q Consensus 184 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~--~ee~v~~~~~ 244 (250)
..+..|+.|+|+. +..+|.|.|++|.... ..=.|.|-|..-| .-|=|+.++|
T Consensus 24 ~~~~vG~kv~v~~----~~~~yeAeIl~ir~~~-----g~~~YYVHY~g~NkRlDEWV~~~RI 77 (94)
T 2rnz_A 24 DDIIIKCQCWVQK----NDEERLAEILSINTRK-----APPKFYVHYVNYNKRLDEWITTDRI 77 (94)
T ss_dssp GGCCTTEEEEEEC----SSCEEEEEEEEEECSS-----SSCEEEEECTTSCSTTCEEEETTTB
T ss_pred ccccCCCEEEEEE----CCEEEEEEEEEEEEcC-----CCcEEEEEeCCcCcccccccCHHHc
Confidence 4578999999995 3478999999998642 2246888888776 3344555544
No 165
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=69.76 E-value=11 Score=32.05 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=46.5
Q ss_pred CcccccccccCceEEEEeeeCCcceeEeeEEeeeeeccCCC-----------CceeeEEEEEEecCCccccccccccccc
Q 025634 179 EPSDCHKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDI-----------RGCRCLFLVRYNHDNTEERVRLRRLCCR 247 (250)
Q Consensus 179 e~~eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~-----------~~C~C~F~Vr~~h~~~ee~v~~~~~c~~ 247 (250)
-+..+..-+.||+|=|--.+ ...||-|+|+.|.++.-.. .++.+.+-|.|+..|....|.+.--.=|
T Consensus 4 ~d~~~glYKinelVDarD~~--~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~~~iR 81 (161)
T 3db3_A 4 DETELGLYKVNEYVDARDTN--MGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVR 81 (161)
T ss_dssp CCBCCCSSCTTCEEEEECTT--TCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEGGGEE
T ss_pred cccccceEEecceeeeeccC--CCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecchhccc
Confidence 45677778899999875432 4679999999999864311 3688999999998886555554444334
Q ss_pred C
Q 025634 248 P 248 (250)
Q Consensus 248 p 248 (250)
|
T Consensus 82 p 82 (161)
T 3db3_A 82 A 82 (161)
T ss_dssp C
T ss_pred c
Confidence 4
No 166
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=69.15 E-value=14 Score=26.69 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHh
Q 025634 14 GFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQ 69 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQ 69 (250)
.||++|+.+|+++|... ++.+++..+...+...++... ...++...|+
T Consensus 1 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~--------~~~~~~~l~~ 51 (149)
T 2mys_C 1 EFSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNP--------TNAEINKILG 51 (149)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 37899999999999753 567899988888888877653 2355666554
No 167
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=68.77 E-value=10 Score=28.01 Aligned_cols=52 Identities=8% Similarity=0.159 Sum_probs=39.9
Q ss_pred CCccCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhh
Q 025634 11 VFTGFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
..+.||++|+.+|.++|... ++.+++..+...+-..++... ...+++..|+.
T Consensus 6 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~--------~~~~~~~~~~~ 60 (153)
T 2ovk_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP--------PDDELNAMLKE 60 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCC--------CHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCC--------CHHHHHHHHHH
Confidence 46789999999999999853 567999998888877766543 45667766665
No 168
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=67.54 E-value=7 Score=27.90 Aligned_cols=38 Identities=3% Similarity=-0.020 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCC
Q 025634 14 GFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 51 (250)
.+|++|+.++.++|... ++.+++..+...+-.+++++.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~ 42 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPI 42 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCH
Confidence 36899999999999863 567899988888888888765
No 169
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=67.38 E-value=19 Score=26.46 Aligned_cols=41 Identities=7% Similarity=0.070 Sum_probs=33.8
Q ss_pred CCCccCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCC
Q 025634 10 SVFTGFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCS 50 (250)
Q Consensus 10 r~Rt~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS 50 (250)
...+.+|+.|+.+|.++|... ++.+++..+...+-..++..
T Consensus 12 ~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~ 55 (161)
T 3fwb_A 12 PLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFE 55 (161)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC
Confidence 357889999999999999864 56789998888888887654
No 170
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=66.66 E-value=2.9 Score=30.05 Aligned_cols=39 Identities=15% Similarity=0.389 Sum_probs=34.2
Q ss_pred CCceeeeeeeheeeecccCcceEEEEecCCCCCccccee
Q 025634 128 DGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVN 166 (250)
Q Consensus 128 D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~ 166 (250)
+-.||-|.-.|+||+-..|..+..|+..|+..++.-|=+
T Consensus 8 ~pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~ 46 (64)
T 2ee1_A 8 KPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWES 46 (64)
T ss_dssp CCSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEE
T ss_pred CCCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccC
Confidence 346889999999999777889999999999999998855
No 171
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=66.52 E-value=26 Score=30.75 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=59.9
Q ss_pred cCCCceeeeeeeheeeeccc-CcceEEEEecCCCCCcccceeccccccccCCCCCcccccccccCceEEEEeeeCCccee
Q 025634 126 SKDGAWYDVDMFLAHRFLDC-GEAEVRVRFVGFGADEDEWVNVKNAVRERSVPLEPSDCHKLKVGGHVLCFQERRDQGIH 204 (250)
Q Consensus 126 ~~D~AWYdV~~fl~hR~~~~-ge~ev~Vrf~gFg~eeDEw~~v~~~~R~rS~p~e~~eC~~v~~G~~v~cf~~~~~~~~y 204 (250)
..++-||-..+.- +... ++.+..|+|.+ ..+..+..+ ++=--..|. =..|..|.+|+|.-.+..+-.|
T Consensus 19 k~~~~W~rg~v~~---I~~~~~g~~YkVkF~~---~g~~ivs~~-hiA~~~~p~----~~~l~vG~RVVA~~~~~~~~~f 87 (213)
T 3dlm_A 19 KRTKTWHKGTLIA---IQTVGPGKKYKVKFDN---KGKSLLSGN-HIAYDYHPP----ADKLYVGSRVVAKYKDGNQVWL 87 (213)
T ss_dssp CTTSBEEEEEEEE---EEEETTEEEEEEEESS---SCEEEECGG-GEEESSCCC----GGGCCTTCEEEEEEECSSCEEE
T ss_pred ecCCcEEEEEEEE---EEECCCCeEEEEEEcC---CCCEEeecc-eEEEecCCC----ccEEeEEEEEEEEecCCCCcce
Confidence 3679999988751 1121 33578999664 444556543 221111111 1258899999997766667789
Q ss_pred EeeEEeeeeeccCCCCceeeEEEEEEecCC
Q 025634 205 YDAHIAEIHRRMHDIRGCRCLFLVRYNHDN 234 (250)
Q Consensus 205 yDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~ 234 (250)
|=..|.++--..+-- +|+|.||.|-
T Consensus 88 Y~GiVaE~p~~~N~~-----RyLVFFDDG~ 112 (213)
T 3dlm_A 88 YAGIVAETPNVKNKL-----RFLIFFDDGY 112 (213)
T ss_dssp EEEEEEECCCTTTTS-----CEEEEETTSC
T ss_pred eeeEEEECCccCCCc-----eEEEEEeCCC
Confidence 988888876544333 8999999985
No 172
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=66.39 E-value=17 Score=26.86 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=33.3
Q ss_pred CCCccCCHHHHHHHHHHHHhh---C-CCCCCHHHHHHHHHHhCCC
Q 025634 10 SVFTGFTKTELEKMEKLLMES---K-DDLLSKEFCQKIAKSFSCS 50 (250)
Q Consensus 10 r~Rt~FT~~Ql~eLEk~f~~~---~-~~y~~~~~rq~LA~~f~lS 50 (250)
+.-..||+.|+.+|.++|... + +.+++..+...+...++..
T Consensus 7 ~~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~ 51 (161)
T 1dtl_A 7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQN 51 (161)
T ss_dssp TGGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCC
T ss_pred HHHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCC
Confidence 345779999999999999874 3 5789998888888888754
No 173
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=66.23 E-value=23 Score=25.58 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=32.2
Q ss_pred ccCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCC
Q 025634 13 TGFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 51 (250)
..||++|+.+|+++|... ++.+++..+...+...++...
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~ 44 (153)
T 3ox6_A 3 RSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMP 44 (153)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCCC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 468999999999999764 578999999888888887543
No 174
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=66.21 E-value=17 Score=26.56 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=35.7
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHh
Q 025634 11 VFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQ 69 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQ 69 (250)
.+..||++|-+.|-+++++.++. =..||+.||-|+ .||++-|.
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~k------W~~IA~~lgRt~----------~q~knRw~ 64 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGND------WATIGAALGRSA----------SSVKDRCR 64 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSC------HHHHHHHHTSCH----------HHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC------HHHHHHHhCCCH----------HHHHHHHH
Confidence 36789999999999999998753 578899998887 99996443
No 175
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=66.09 E-value=8.8 Score=31.45 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=51.0
Q ss_pred eEEEEecCCCCCccccee-ccccccccCCCCCcccccccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEE
Q 025634 149 EVRVRFVGFGADEDEWVN-VKNAVRERSVPLEPSDCHKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFL 227 (250)
Q Consensus 149 ev~Vrf~gFg~eeDEw~~-v~~~~R~rS~p~e~~eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~ 227 (250)
.+.|+..+.+.+-++..+ +.+... ...|+.. -..+.+|+.+++.-. ++..||-|.|.+|.. -++.
T Consensus 17 ~f~vq~~~~~~~l~~l~~~l~~~~~-~~~~~~~--~~~~~~g~~c~a~~~--~d~~wyRa~V~~v~~---------~~~~ 82 (218)
T 2wac_A 17 TFFAQSVESGSKLESLMSKLHADFQ-SNPPIAG--SYTPKRGDLVAAQFT--LDNQWYRAKVERVQG---------SNAT 82 (218)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHHH-HSCCCTT--SCCCCTTCEEEEECT--TTCCEEEEEEEEEET---------TEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh-hCCCCCC--CccCCcCCEEEEEEC--CCCeEEEEEEEEecC---------CeEE
Confidence 678988875543222222 222111 1223332 235679998776432 246899999999963 3567
Q ss_pred EEEecCCccccccccccccc
Q 025634 228 VRYNHDNTEERVRLRRLCCR 247 (250)
Q Consensus 228 Vr~~h~~~ee~v~~~~~c~~ 247 (250)
|.|...++.+.|++.+|..-
T Consensus 83 V~~vDyG~~~~v~~~~l~~l 102 (218)
T 2wac_A 83 VLYIDYGNKETLPTNRLAAL 102 (218)
T ss_dssp EEETTTCCEEEEEGGGEEEC
T ss_pred EEEEecCCeEEEchHHcccC
Confidence 88877677777887777543
No 176
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=65.81 E-value=11 Score=27.33 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCC
Q 025634 15 FTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 15 FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 51 (250)
||++|+.+|.++|... ++.+++..+...+...++...
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~ 40 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNP 40 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCC
Confidence 7999999999999854 567899999888888887654
No 177
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.18 E-value=6.6 Score=30.02 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=30.5
Q ss_pred EecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 122 EARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 122 EArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
=|+.+.|++||-..+. |+...+ .+.|-|-.||+++ -|++.
T Consensus 29 aak~~d~n~WyRakV~---~v~~~~--~veVl~~DyGn~~--~V~~~ 68 (85)
T 2eqk_A 29 AVKIQDKNQWRRGQII---RMVTDT--LVEVLLYDVGVEL--VVNVD 68 (85)
T ss_dssp EEECSSSCCEEEEEEE---EECSSS--EEEEECTTTCCEE--EEETT
T ss_pred EEEeCCCCeEEEEEEE---EecCCC--eEEEEEEccCCEE--EEEcc
Confidence 3577889999999987 555545 5999999999875 45554
No 178
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=64.82 E-value=14 Score=27.31 Aligned_cols=40 Identities=8% Similarity=0.146 Sum_probs=31.8
Q ss_pred CccCCHHHHHHHHHHHHh----hCCCCCCHHHHHHHHHHhCCCC
Q 025634 12 FTGFTKTELEKMEKLLME----SKDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~----~~~~y~~~~~rq~LA~~f~lS~ 51 (250)
-..||++|+.+|+++|.. .++.+++..+...+-..++...
T Consensus 4 ~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~ 47 (158)
T 2jnf_A 4 VSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQ 47 (158)
T ss_dssp STTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTCSC
T ss_pred hhhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCCCC
Confidence 357999999999999974 3467899988888877777543
No 179
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=64.72 E-value=17 Score=24.87 Aligned_cols=49 Identities=4% Similarity=0.026 Sum_probs=37.0
Q ss_pred ccCCHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHh
Q 025634 13 TGFTKTELEKMEKLLME---SKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQ 69 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQ 69 (250)
..+|++++.+|..+|.. .++.+++..+...+-..++.. +...+|...|+
T Consensus 12 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--------~~~~~~~~l~~ 63 (90)
T 1avs_A 12 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN--------PTKEELDAIIE 63 (90)
T ss_dssp HHBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC--------CCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 45899999999999986 456789998888888887754 23456666664
No 180
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=63.97 E-value=20 Score=21.31 Aligned_cols=40 Identities=10% Similarity=0.245 Sum_probs=30.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhh
Q 025634 14 GFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
.+++++..++-.++.+ +. ...+||+.|++|. .-|..|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~--g~-----s~~~IA~~lgis~----------~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL--NV-----SLHEMSRKISRSR----------HCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT--TC-----CHHHHHHHHTCCH----------HHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc--CC-----CHHHHHHHHCcCH----------HHHHHHHhh
Confidence 5788887777666654 22 3678999999997 779999864
No 181
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=63.58 E-value=15 Score=24.12 Aligned_cols=47 Identities=6% Similarity=0.092 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHh
Q 025634 15 FTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQ 69 (250)
Q Consensus 15 FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQ 69 (250)
+|++++.+|..+|... ++.+++..+...+...++... ...+|+..|+
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~--------~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDV--------KKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCC--------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 5789999999999753 467888888888888776542 3455666664
No 182
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=63.32 E-value=19 Score=26.42 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=37.8
Q ss_pred ccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCcccccccccc
Q 025634 185 KLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRL 244 (250)
Q Consensus 185 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~ 244 (250)
+...||.|++== ..+.+||-|.|.+|.-..+ .++|.|.. .+++.++...|
T Consensus 9 ~~~vgd~VmaRW--~Gd~~yYparI~Si~s~~~-------~Y~V~fKd-gT~e~L~~kDI 58 (66)
T 2l8d_A 9 KYADGEVVMGRW--PGSVLYYEVQVTSYDDASH-------LYTVKYKD-GTELALKESDI 58 (66)
T ss_dssp SSCSSCEEEEEC--TTSSCEEEEEEEEEETTTT-------EEEEEETT-SCEEEEEGGGE
T ss_pred EeecCCEEEEEc--CCCccceEEEEEEeccCCc-------eEEEEecC-CCEEeechhcc
Confidence 456899999866 4468999999999994433 68999998 66666655554
No 183
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=62.87 E-value=20 Score=25.95 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=37.3
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhh
Q 025634 12 FTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSR 71 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNR 71 (250)
...+|.+|...||+++.......+ ..=+.||+.+|-|. +||+.=|+.=
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~--~RW~~IA~~lgRt~----------~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTP--GRWEKIAHELGRSV----------TDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCT--THHHHHHHHHTSCH----------HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCC--cHHHHHHHHhCCCH----------HHHHHHHHHH
Confidence 567999999999999998544434 45789999998886 9998655443
No 184
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=62.27 E-value=20 Score=25.72 Aligned_cols=44 Identities=7% Similarity=0.237 Sum_probs=32.3
Q ss_pred CCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhh
Q 025634 10 SVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 10 r~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
+.+..||.++..+.=+++.. +. -..+||..||+|. ..|..|...
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~--g~-----s~~~iA~~~gIs~----------sTl~rW~k~ 61 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHD--GE-----SKASVARDIGVPE----------STLRGWCKN 61 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHH--TC-----CHHHHHHHHTCCH----------HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC--CC-----CHHHHHHHHCcCH----------HHHHHHHHH
Confidence 35678999887666666643 22 3568999999997 889999854
No 185
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=61.83 E-value=12 Score=31.55 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=44.3
Q ss_pred CCCceeeeeeeheeeecccCcceEEEEecCCCCCccccee-ccccccccCCCCCcccccccccCceEEEEeeeCCcceeE
Q 025634 127 KDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVN-VKNAVRERSVPLEPSDCHKLKVGGHVLCFQERRDQGIHY 205 (250)
Q Consensus 127 ~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~-v~~~~R~rS~p~e~~eC~~v~~G~~v~cf~~~~~~~~yy 205 (250)
+-|.+.+|-+. | +.+.| .+.|+..+.+..-.+..+ +...... +-+++.. ..+.+|+.+++.-. +..||
T Consensus 14 ~~~~~~~V~Vt--~-v~~p~--~f~vq~~~~~~~l~~l~~~l~~~~~~-~~~~~~~--~~~~~G~~c~a~~~---d~~wy 82 (246)
T 2hqx_A 14 RSASYKPVFVT--E-ITDDL--HFYVQDVETGTQFQKLMENMRNDIAS-HPPVEGS--YAPRRGEFCIAKFV---DGEWY 82 (246)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHH-SCCCTTT--CCCCTTCEEEEECT---TSCEE
T ss_pred CCCCEEEEEEE--E-ECCCC--EEEEEECCcHHHHHHHHHHHHHHHhh-CCCCCCC--CCCCCCCEEEEEcC---CCCEE
Confidence 44566666664 2 33445 668887775533222222 2211111 1122211 34678997666433 36899
Q ss_pred eeEEeeeeeccCCCCceeeEEEEEEecCCcccccccccccccC
Q 025634 206 DAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRLCCRP 248 (250)
Q Consensus 206 DA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~c~~p 248 (250)
-|.|.+|... -++.|.|..-++.+.|++.+|+.-|
T Consensus 83 Ra~V~~~~~~--------~~~~V~~vDyGn~~~v~~~~lr~l~ 117 (246)
T 2hqx_A 83 RARVEKVESP--------AKIHVFYIDYGNREVLPSTRLGTLS 117 (246)
T ss_dssp EEEEEEEEET--------TEEEEEETTTCCEEEECGGGEECCC
T ss_pred EEEEEEEcCC--------CeEEEEEEeCCCeEEEeHHHhhcCC
Confidence 9999999642 2678888887778888888876543
No 186
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=61.27 E-value=23 Score=26.45 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=39.6
Q ss_pred CccCCHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHhCC-CCcCCCCCccchhHHHHHHhh
Q 025634 12 FTGFTKTELEKMEKLLME---SKDDLLSKEFCQKIAKSFSC-SAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~f~l-S~~RaGK~~Vq~~QVk~WFQN 70 (250)
...||++|+.+|..+|.. .++.+++..+...+...++. .. ...++...|++
T Consensus 16 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~--------~~~~~~~l~~~ 70 (166)
T 2mys_B 16 FSMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNV--------KNEELDAMIKE 70 (166)
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCC--------CHHHHHHHHHH
Confidence 457999999999999986 35778999999888888876 42 34667777764
No 187
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=60.92 E-value=21 Score=23.89 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=36.0
Q ss_pred CccCCHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHh
Q 025634 12 FTGFTKTELEKMEKLLME---SKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQ 69 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQ 69 (250)
...+|++++.+|.++|.. .++.+++..+...+-..++.. +...++...|+
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--------~~~~~~~~~~~ 57 (85)
T 2ktg_A 5 KKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGAN--------PTKQKISEIVK 57 (85)
T ss_dssp CCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSC--------CCHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 456899999999999986 356788888888887777643 23355665554
No 188
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=60.40 E-value=9.4 Score=29.84 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHHh-----hCCCCCCHHHHHHHHHHhCCCC
Q 025634 14 GFTKTELEKMEKLLME-----SKDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~-----~~~~y~~~~~rq~LA~~f~lS~ 51 (250)
.+|++||++|..+|.. .+..+++..+...+-.++|..+
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~ 44 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC
Confidence 5899999999999974 3457888888888878887664
No 189
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=60.16 E-value=13 Score=25.21 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=33.1
Q ss_pred ccCCHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHh
Q 025634 13 TGFTKTELEKMEKLLME---SKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQ 69 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQ 69 (250)
..+|++++.+|..+|.. .++.+++..+...+-..++ . ++..+|...|+
T Consensus 3 ~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g-~--------~~~~~~~~~~~ 53 (86)
T 2opo_A 3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG-S--------VTPDEVRRMMA 53 (86)
T ss_dssp ---CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT-T--------CCHHHHHHHHH
T ss_pred ccCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC-C--------CCHHHHHHHHH
Confidence 35899999999999975 3567888888887777665 2 23456666664
No 190
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=58.54 E-value=17 Score=34.91 Aligned_cols=51 Identities=10% Similarity=0.138 Sum_probs=40.7
Q ss_pred CCccCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHh
Q 025634 11 VFTGFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQ 69 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQ 69 (250)
.+..||++||++|.++|... ++.+++..+...+-..++... +..+|+.-|+
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~--------TeeEI~~Lf~ 345 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP--------TEAELQDMIN 345 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCC--------CHHHHHHHHH
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCC--------CHHHHHHHHH
Confidence 46789999999999999863 678999999888888887653 4466776664
No 191
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=58.05 E-value=26 Score=25.82 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCC
Q 025634 14 GFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 51 (250)
.+|++|+.+|.++|... ++.+++..+...+...++..+
T Consensus 3 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~ 43 (148)
T 1exr_A 3 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNP 43 (148)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 58999999999999753 567889888888888877654
No 192
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=57.58 E-value=9.6 Score=34.14 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=36.5
Q ss_pred ceeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceec
Q 025634 118 EMEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNV 167 (250)
Q Consensus 118 ~~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v 167 (250)
.|-+||-..++-..+=|++.. ++ .|. .|+|+|.|..+++|.|++.
T Consensus 147 GMKLEavD~~np~~icvATV~--~v--~g~-rl~v~fDGw~~~~D~W~~~ 191 (265)
T 2r58_A 147 GQKLEAVDKKNPQLICCATVD--AI--KDD-QIHVTFDGWRGAFDYWCNY 191 (265)
T ss_dssp TCEEEEECTTSTTCEEEEEEE--EE--ETT-EEEEEETTSCGGGCEEEET
T ss_pred CcEEEeccCCCCCCEEEEEEE--Ee--cCC-EEEEEeCCCCCcCCEEEEC
Confidence 388999999998877777764 33 244 8999999999999999984
No 193
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=62.24 E-value=2.2 Score=32.22 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=32.6
Q ss_pred ccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCC--cccccccccc
Q 025634 185 KLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDN--TEERVRLRRL 244 (250)
Q Consensus 185 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~--~ee~v~~~~~ 244 (250)
.+..|+.|+|++.+ .+|+|.|++|.... ..-.|.|-|.-=+ .-|-||.++|
T Consensus 12 ~~~~Gekv~~~~~~----~~y~AkIl~i~~~~-----~~~~YyVHY~GwNkR~DEWV~~~Rl 64 (85)
T 2lrq_A 12 LFVDGERVLCFHGP----LIYEAKVLKTKPDA-----TPVEYYIHYAGWSKNWDEWVPENRV 64 (85)
Confidence 47799999999832 56999999998522 1234667665433 2233444443
No 194
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=57.50 E-value=19 Score=27.41 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=32.0
Q ss_pred CccCCHHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHhCC
Q 025634 12 FTGFTKTELEKMEKLLME-SKDDLLSKEFCQKIAKSFSC 49 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~-~~~~y~~~~~rq~LA~~f~l 49 (250)
.+.||.+||.+|-+.|.. .++.+++..+...+-..++.
T Consensus 12 ~~~~s~~~i~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~ 50 (183)
T 1s6c_A 12 QTNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFP 50 (183)
T ss_dssp HSSCCHHHHHHHHHHHHHHCTTSEECHHHHHHHHHHHST
T ss_pred hcCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHcC
Confidence 467999999999999998 57789999888888777763
No 195
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=57.08 E-value=10 Score=28.54 Aligned_cols=38 Identities=3% Similarity=0.156 Sum_probs=31.2
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCC
Q 025634 14 GFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 51 (250)
-||++||++|..+|... ++.+++..+...+...++..+
T Consensus 3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~ 43 (148)
T 2lmt_A 3 ELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNP 43 (148)
T ss_dssp SCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCc
Confidence 58999999999998763 677888888888888877664
No 196
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=56.79 E-value=10 Score=33.41 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=37.2
Q ss_pred ceeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 118 EMEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 118 ~~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
-|-+||...++-..+-|++.. .+ .|+ .|+|+|.|..+..|.|++..
T Consensus 175 GmKLEavD~~~p~~icvATV~--~v--~g~-rl~v~fDgw~~~~D~W~~~d 220 (243)
T 2biv_A 175 GMKLEAIDKKNPYLICPATIG--DV--KGD-EVHITFDGWSGAFDYWCKYD 220 (243)
T ss_dssp TCEEEEECTTSTTCEEEEEEE--EE--ETT-EEEEEETTSCGGGCEEEETT
T ss_pred CCEEEEEccCCCCeEEEEEEE--Ee--cCC-EEEEEECCCCCcCCEEEeCC
Confidence 388999999998888888764 23 244 89999999999999999853
No 197
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=61.52 E-value=2.3 Score=32.18 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=22.8
Q ss_pred ecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCc
Q 025634 123 ARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADE 161 (250)
Q Consensus 123 Ars~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~ee 161 (250)
||-+ ||.||...+.- +...+ ++.|.|.+ |+.|
T Consensus 15 Akws-Dg~wY~A~I~~---v~~~~--~y~V~F~D-Gn~E 46 (81)
T 2ldm_A 15 ASWS-DSRFYPAKVTA---VNKDG--TYTVKFYD-GVVQ 46 (81)
Confidence 4546 99999999863 32323 78999988 7654
No 198
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=56.22 E-value=26 Score=27.64 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=38.2
Q ss_pred CccCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHh
Q 025634 12 FTGFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQ 69 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQ 69 (250)
...||+.|+.+|..+|... ++.+++..+...+-..++... ...+|...|+
T Consensus 48 ~~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~--------~~~~~~~l~~ 100 (196)
T 3dtp_E 48 FAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLC--------TEQELDSMVA 100 (196)
T ss_dssp SCSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCC--------CHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 5579999999999999874 567999998888888877553 3455665554
No 199
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=55.51 E-value=4.7 Score=33.16 Aligned_cols=19 Identities=26% Similarity=0.632 Sum_probs=18.0
Q ss_pred eEEEEecCCCCCcccceec
Q 025634 149 EVRVRFVGFGADEDEWVNV 167 (250)
Q Consensus 149 ev~Vrf~gFg~eeDEw~~v 167 (250)
+..|||.||..--||||..
T Consensus 78 ~Y~VHY~GWn~rwDEWV~~ 96 (136)
T 2k3y_A 78 SFFIHYQGWKSSWDEWVGY 96 (136)
T ss_dssp EEEECCTTSCGGGCEEEET
T ss_pred eEEEEeCCcCCcceeeecH
Confidence 8999999999999999984
No 200
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.31 E-value=51 Score=23.11 Aligned_cols=52 Identities=27% Similarity=0.224 Sum_probs=38.2
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC-CCCcCCCCCccchhHHHHHHhhhc
Q 025634 11 VFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFS-CSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~-lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
.+..||++|-..|++++...+........=..||+.|. -|. +||++-+||-.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~----------~qcr~r~~~~l 59 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTA----------KQVASQVQKYF 59 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCH----------HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCH----------HHHHHHHHHHH
Confidence 46789999999999999996532222467889999995 454 89886555553
No 201
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=55.15 E-value=5.9 Score=31.55 Aligned_cols=20 Identities=25% Similarity=0.543 Sum_probs=18.3
Q ss_pred ceEEEEecCCCCCcccceec
Q 025634 148 AEVRVRFVGFGADEDEWVNV 167 (250)
Q Consensus 148 ~ev~Vrf~gFg~eeDEw~~v 167 (250)
++..|+|.|+..--||||..
T Consensus 59 ~~Y~VHY~GWn~~WDEWV~~ 78 (110)
T 3oa6_A 59 PEYLIHFNGWNRSWDRWAAE 78 (110)
T ss_dssp EEEEEEETTSCGGGCEEEEG
T ss_pred cEEEEEECCcCcchhhccCh
Confidence 57999999999999999983
No 202
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=53.86 E-value=11 Score=33.30 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=58.2
Q ss_pred eeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc--------------------ccc-------
Q 025634 119 MEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK--------------------NAV------- 171 (250)
Q Consensus 119 ~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~--------------------~~~------- 171 (250)
|-+||....+-.-|=|++.+ .+ .|. .|+|||.|+.+.+|.|+++- +.+
T Consensus 67 mKLEa~D~~~~~~~~vATV~--~v--~g~-~l~l~~dG~d~~~DfW~~~~S~~I~PvGwc~~~g~~L~pP~g~~~~~f~W 141 (243)
T 2biv_A 67 MKLEARDPRNATSVCIATVI--GI--TGA-RLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSW 141 (243)
T ss_dssp CEEEEEETTEEEEEEEEEEE--EE--ETT-EEEEEETTSCSSSCEEEETTCTTEECTTHHHHTTCCCCCCTTCSSCGGGH
T ss_pred CEEEEecCCCCCcEEEEEEE--EE--eCC-EEEEEECCCCCCCCEeecCCCCccccChhHHhcCCccCCCcccccccchH
Confidence 78888888876555566654 22 354 89999999999999998831 011
Q ss_pred ---------cccCCCCCcc-------cccccccCceEEEEeeeCCcceeEeeEEeeee
Q 025634 172 ---------RERSVPLEPS-------DCHKLKVGGHVLCFQERRDQGIHYDAHIAEIH 213 (250)
Q Consensus 172 ---------R~rS~p~e~~-------eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~ 213 (250)
....+|.+-. .=+..++|..|-+.--.+ ..+++=|.|.+|.
T Consensus 142 ~~yL~~tl~ga~~aP~~lF~~~~~~~~~~~F~~GmKLEavD~~~-p~~icvATV~~v~ 198 (243)
T 2biv_A 142 PMFLLKTLNGSEMASATLFKKEPPKPPLNNFKVGMKLEAIDKKN-PYLICPATIGDVK 198 (243)
T ss_dssp HHHHHHHHTTCCBCCGGGSCCCCCCCSSCCCCTTCEEEEECTTS-TTCEEEEEEEEEE
T ss_pred HHHHHHhccCCccCCHHHhccCCCCCccccccCCCEEEEEccCC-CCeEEEEEEEEec
Confidence 1222232211 114677888877665444 4578899999997
No 203
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=53.63 E-value=12 Score=27.94 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=29.3
Q ss_pred ccCCHHHHHHHHHHHHhh-----CCCCCCHHHHHHHHHHhCCCC
Q 025634 13 TGFTKTELEKMEKLLMES-----KDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~~-----~~~y~~~~~rq~LA~~f~lS~ 51 (250)
+.||++|+.+|.++|... ++.+++..+...+-..++..+
T Consensus 1 s~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~lg~~~ 44 (159)
T 2ovk_C 1 SQLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSSEEEGGGHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHcCCCC
Confidence 468999999999999763 466777777777777766543
No 204
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=53.05 E-value=24 Score=27.22 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=36.5
Q ss_pred ccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCC--cccccccccc
Q 025634 187 KVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDN--TEERVRLRRL 244 (250)
Q Consensus 187 ~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~--~ee~v~~~~~ 244 (250)
.+|..|+|++. +..+|.|.|+++..... ....-.|.|-|..-+ .-|=|+..+|
T Consensus 16 ~~~e~vlc~~~---dg~~yeAeIl~ir~~~~--~~~~~~YYVHY~g~NkRlDEWV~~~RL 70 (92)
T 2bud_A 16 NPDKIYFIRRE---DGTVHRGQVLQSRTTEN--AAAPDEYYVHYVGLNRRLDGWVGRHRI 70 (92)
T ss_dssp CTTSCEEEECT---TSCEEEEEEEEEECTTT--CSSCCEEEEECSSSCTTTCEEEETTTE
T ss_pred CCCCEEEEEeC---CCCEEEEEEEEEeeccC--CCCCcEEEEEeCCcccccccccCHHHh
Confidence 46889999993 34789999999885432 223457899988776 3344555554
No 205
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=53.04 E-value=11 Score=33.75 Aligned_cols=98 Identities=19% Similarity=0.287 Sum_probs=63.9
Q ss_pred eeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceeccc-------------------------cc--
Q 025634 119 MEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVKN-------------------------AV-- 171 (250)
Q Consensus 119 ~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~~-------------------------~~-- 171 (250)
|-+||-...+-.-+=|++.. .+ .|. .|+|||.|+.+.+|-|+++.. .|
T Consensus 39 MKLEavDp~~~~~icvATV~--~v--~g~-~l~l~~DG~d~~~DfW~~~~S~~I~PvGwc~~~g~~L~pP~g~~~~~f~W 113 (265)
T 2r58_A 39 MKLEALDPRNVTSTCIATVV--GV--LGS-RLRLRLDGSDSQNDFWRLVDSTEIHAIGHCEKNGGMLQPPLGFCMNASSW 113 (265)
T ss_dssp CEEEEEETTEEEEEEEEEEE--EE--ETT-EEEEEETTSCSSCCEEEETTCTTEECTTHHHHTTCCCCCCTTCSSCGGGH
T ss_pred CEeEEecCCCCCCEEEEEEE--EE--eCC-EEEEEeCCCCCcCCEeEeCCCCCeeccccHHhcCCcccCccccccCcCCH
Confidence 88899888887656666653 22 354 899999999999999988310 00
Q ss_pred ---------cccCCCCC-------cccccccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEe
Q 025634 172 ---------RERSVPLE-------PSDCHKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYN 231 (250)
Q Consensus 172 ---------R~rS~p~e-------~~eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~ 231 (250)
.....|.. ...-...++|-.+-+.-..+ ..+.+=|.|.+|.- =+++|.||
T Consensus 114 ~~yL~ktl~ga~~aP~~lF~~~~~~~~~~~F~vGMKLEavD~~n-p~~icvATV~~v~g---------~rl~v~fD 179 (265)
T 2r58_A 114 PGYLCKILNNAMVAPEEIFQPEPPEPEENLFKVGQKLEAVDKKN-PQLICCATVDAIKD---------DQIHVTFD 179 (265)
T ss_dssp HHHHHHHHTTCCBCCGGGSCCCCCCCSSCCCCTTCEEEEECTTS-TTCEEEEEEEEEET---------TEEEEEET
T ss_pred HHHHHHhhcCCccCCHHHhcccCCCCcccccccCcEEEeccCCC-CCCEEEEEEEEecC---------CEEEEEeC
Confidence 11122221 12234688888888765444 45779999999962 24677765
No 206
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=52.86 E-value=36 Score=28.03 Aligned_cols=54 Identities=22% Similarity=0.204 Sum_probs=37.4
Q ss_pred ccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCcccccccccccccC
Q 025634 185 KLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRLCCRP 248 (250)
Q Consensus 185 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~c~~p 248 (250)
.+.+|+.+++.- . ++..||=|.|.++.... .+.|.|-.=++.+.|++.+|..-|
T Consensus 65 ~~~~G~~c~a~~-~-~d~~wyRa~V~~~~~~~--------~~~V~~vDyG~~~~v~~~~l~~l~ 118 (201)
T 4b9w_A 65 KAEIGRPCCAFF-S-GDGNWYRALVKEILPSG--------NVKVHFVDYGNVEEVTTDQLQAIL 118 (201)
T ss_dssp CCCTTCEEEEEE-T-TTTEEEEEEEEEECTTS--------CEEEEETTTCCEEEECGGGEEECC
T ss_pred CCCCCCEEEEEE-C-CCCeEEEEEEEEECCCC--------eEEEEEEccCCEEEEEHHHhccCh
Confidence 467898766543 2 34689999999986321 256777766677888888886543
No 207
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=52.77 E-value=20 Score=26.24 Aligned_cols=50 Identities=18% Similarity=0.385 Sum_probs=34.5
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhh
Q 025634 12 FTGFTKTELEKMEKLLMESKDDLLSK-EFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSR 71 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~~~~y~~~-~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNR 71 (250)
+..||+++..++=+.+.+.+..+.+. .-..++|..||+|+ .+|..|-+.-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~----------~tl~~W~~~~ 54 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP----------ETLRVWVRQH 54 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCH----------HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCH----------HHHHHHHHHH
Confidence 34699988876655554422123332 46789999999997 8899997654
No 208
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=52.68 E-value=11 Score=27.98 Aligned_cols=38 Identities=5% Similarity=0.222 Sum_probs=28.4
Q ss_pred ccCCHHHHHHHHHHHHh-----hCCCCCCHHHHHHHHHHhCCC
Q 025634 13 TGFTKTELEKMEKLLME-----SKDDLLSKEFCQKIAKSFSCS 50 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~-----~~~~y~~~~~rq~LA~~f~lS 50 (250)
+.||++|+.+|.++|.. .++.+++..+...+-..++..
T Consensus 1 ~~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g~~ 43 (156)
T 1wdc_C 1 PKLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGIN 43 (156)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcCCC
Confidence 46899999999999975 456778887777777766654
No 209
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=51.65 E-value=9 Score=23.53 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=30.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 14 GFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
.++++++..+-.++.+ + . ...+||+.||+|. .-|..|++.-.
T Consensus 5 ~~~~~~~~~i~~l~~~--g--~---s~~~ia~~lgvs~----------~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEK--G--H---PRQQLAIIFGIGV----------STLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHT--T--C---CHHHHHHTTSCCH----------HHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHc--C--C---CHHHHHHHHCCCH----------HHHHHHHHHcc
Confidence 4677777777776654 3 2 3578999999996 77999986543
No 210
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=50.60 E-value=28 Score=25.64 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=37.7
Q ss_pred ccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCcccccccccc
Q 025634 185 KLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRL 244 (250)
Q Consensus 185 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~ 244 (250)
+...||.|++==- .+.+||-|.|.+|.-..+ .++|.|.. .+++.++...|
T Consensus 12 ~f~vgd~VmaRW~--Gd~~yYparItSits~~~-------~Y~VkfKd-gT~e~L~~kDI 61 (68)
T 2dig_A 12 KFADGEVVRGRWP--GSSLYYEVEILSHDSTSQ-------LYTVKYKD-GTELELKENDI 61 (68)
T ss_dssp SSCSSCEEEEECT--TTCCEEEEEEEEEETTTT-------EEEEECTT-SCEEEEETTTE
T ss_pred EeecCCEEEEEcc--CCccceEEEEEEeccCCc-------eEEEEecC-CCEEEechhcc
Confidence 4568999998555 358999999999994333 68999988 66666665555
No 211
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=50.54 E-value=10 Score=31.85 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHHHhCCCC
Q 025634 33 DLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 33 ~y~~~~~rq~LA~~f~lS~ 51 (250)
.|++.+..+.+|+.|++++
T Consensus 39 G~l~~~~~~~iA~~l~l~~ 57 (181)
T 3i9v_2 39 GWIRPERIEEIARLVGTTP 57 (181)
T ss_dssp SSCCHHHHHHHHHHHTSCH
T ss_pred CCCCHHHHHHHHHHhCcCH
Confidence 6999999999999999998
No 212
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=50.46 E-value=54 Score=23.71 Aligned_cols=48 Identities=19% Similarity=0.175 Sum_probs=37.3
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHh-CCCCcCCCCCccchhHHHHHHhh
Q 025634 11 VFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSF-SCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f-~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
....+|.+|-..|++++...+. -+...=.+||+.+ |-|. +||+.=|++
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~--~~~~rW~~IA~~vpGRT~----------~qcr~Ry~~ 65 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPR--GSSDCWDKIARCVPSKSK----------EDCIARYKL 65 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCS--SSHHHHHHHGGGCSSSCH----------HHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC--CCCchHHHHHHHcCCCCH----------HHHHHHHHH
Confidence 4678999999999999998532 2467889999999 5665 888865544
No 213
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=50.21 E-value=33 Score=24.57 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=30.7
Q ss_pred ccCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCC
Q 025634 13 TGFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 51 (250)
+.+|++|+.++.++|... ++.+++..+...+...++...
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~ 44 (147)
T 4ds7_A 3 QNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSP 44 (147)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTCCC
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCCCC
Confidence 468999999999999764 467888888888877777543
No 214
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=49.68 E-value=6.2 Score=29.02 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=21.5
Q ss_pred ccCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCC
Q 025634 13 TGFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 51 (250)
+.||++|+.+|.++|... ++.+++..+...+-..++..+
T Consensus 2 ~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~ 43 (151)
T 1w7j_B 2 IEFNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNP 43 (151)
T ss_dssp ---------CHHHHHHHHCCSSSSEEESTTHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 358999999999999863 456777777777666676543
No 215
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=48.39 E-value=45 Score=24.65 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHhCCC
Q 025634 14 GFTKTELEKMEKLLME---SKDDLLSKEFCQKIAKSFSCS 50 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~f~lS 50 (250)
.|+++++.+|+++|.. .++.+++..+...+...++..
T Consensus 20 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~ 59 (166)
T 2aao_A 20 SLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGAN 59 (166)
T ss_dssp HSCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTCC
T ss_pred hCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCC
Confidence 5899999999999986 356788888888777777654
No 216
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=48.15 E-value=7.2 Score=24.97 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHhC
Q 025634 19 ELEKMEKLLMESKDDLLSKEFCQKIAKSFS 48 (250)
Q Consensus 19 Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~ 48 (250)
|+++||+.|++.= +-|-+.+.++|-.+|.
T Consensus 2 eveelekkfkelw-kgprrgeieelhkkfh 30 (35)
T 1qp6_A 2 EVEELEKKFKELW-KGPRRGEIEELHKKFH 30 (35)
T ss_dssp CSHHHHHHHHHHH-SSSCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-cCCccchHHHHHHHHH
Confidence 4789999999983 5688889999988874
No 217
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=47.80 E-value=30 Score=33.25 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=38.8
Q ss_pred cccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCcccccccccccccC
Q 025634 184 HKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRLCCRP 248 (250)
Q Consensus 184 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~c~~p 248 (250)
..+.+|+.+++.-. +..||-|.|.+|.. . -.+.|.|..=.+.+.|++.+|..-|
T Consensus 410 ~~~~~G~~c~a~~~---d~~wyRa~I~~v~~----~----~~~~V~fvDyGn~e~v~~~~Lr~l~ 463 (570)
T 3bdl_A 410 YAPRRGEFCIAKFV---DGEWYRARVEKVES----P----AKIHVFYIDYGNREVLPSTRLGTLS 463 (570)
T ss_dssp CCCCTTCEEEEECT---TSCEEEEEEEEEEE----T----TEEEEEETTTCCEEEECGGGEECCC
T ss_pred cCCCcCCEEEEEEC---CCCEEEEEEEEEcC----C----CeEEEEEEeCCCeEEEEHHHCccCC
Confidence 45779998776443 46799999999984 1 2456777776677779888886544
No 218
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=47.76 E-value=56 Score=29.13 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=42.0
Q ss_pred CCCCCC--CCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccC
Q 025634 2 DRLRPR--QRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDR 75 (250)
Q Consensus 2 ~r~r~~--~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~ 75 (250)
+++|++ ..+....+|.+|.+.++..|...++. -..||+.++-- +..||++-|+|-+.+.
T Consensus 121 e~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKD------W~~IAk~VgTK---------T~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 121 EPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRD------FQAISDVIGNK---------SVVQVKNFFVNYRRRF 181 (235)
T ss_dssp GGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSC------HHHHHHHHSSC---------CHHHHHHHHHHTTTTT
T ss_pred ccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcC------HHHHHHHcCCC---------CHHHHHHHHHHHHHHh
Confidence 566665 33457789999999999999998643 67778876532 2588997666655453
No 219
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=47.45 E-value=15 Score=35.12 Aligned_cols=46 Identities=24% Similarity=0.451 Sum_probs=38.2
Q ss_pred ceeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 118 EMEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 118 ~~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
.|-+||-..++-...=|++.. .+. | ..|+|+|.|..++.|+|+++.
T Consensus 380 gmkLEAvD~~np~~icvATV~--~v~--~-~~~~i~fDgw~~~~d~w~~~~ 425 (447)
T 3h6z_A 380 GMSLECADLMDPRLVCVATVA--RVV--G-RLLKVHFDGWTDEYDQWLDCE 425 (447)
T ss_dssp TCEEEEECTTSTTCEEEEEEE--EEE--T-TEEEEECTTSCGGGCEEEETT
T ss_pred CCEEEeecCCCCCcEEEEEEe--Eec--C-CEEEEEeCCCCCcCCEEEecC
Confidence 388999999999999888873 222 3 489999999999999999854
No 220
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.02 E-value=42 Score=24.70 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=31.0
Q ss_pred CcccccccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEE
Q 025634 179 EPSDCHKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLF 226 (250)
Q Consensus 179 e~~eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F 226 (250)
-.+-|.++.+|+.|||-. .+-+||-+.|..|... .+.|.=.|
T Consensus 3 ~g~~~~~f~eGqdVLarW---sDGlfYlGtV~kV~~~---~~~ClV~F 44 (68)
T 2e5p_A 3 SGSSGPRLWEGQDVLARW---TDGLLYLGTIKKVDSA---REVCLVQF 44 (68)
T ss_dssp CCCCCCCCCTTCEEEEEC---TTSSEEEEEEEEEETT---TTEEEEEE
T ss_pred CCCCCcccccCCEEEEEe---cCCcEEEeEEEEEecC---CcEEEEEE
Confidence 456789999999999754 3478999999999843 34565443
No 221
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=46.86 E-value=34 Score=24.46 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=32.2
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 12 FTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
|..||+++..+.=+.+.... . ....++|..||+|. ..|..|.+.-+
T Consensus 3 r~~ys~e~k~~~v~~~~~~~-g----~s~~~ia~~~gIs~----------~tl~rW~~~~~ 48 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSD-G----ASLQQIANDLGINR----------VTLKNWIIKYG 48 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGG-G----SCHHHHHHHHTSCH----------HHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHcC-C----ChHHHHHHHHCcCH----------HHHHHHHHHHh
Confidence 35699988776655554320 1 13679999999997 88999986543
No 222
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=46.39 E-value=31 Score=26.23 Aligned_cols=36 Identities=31% Similarity=0.284 Sum_probs=30.2
Q ss_pred CccCCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHh
Q 025634 12 FTGFTKTELEKMEKLLMES-KDDLLSKEFCQKIAKSF 47 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~-~~~y~~~~~rq~LA~~f 47 (250)
.+.|+..||.++=+.|... ++.+++..+...+-..+
T Consensus 19 ~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~ 55 (190)
T 1g8i_A 19 KTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQF 55 (190)
T ss_dssp TSSSCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHh
Confidence 4679999999999999877 67899998888877776
No 223
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=45.49 E-value=39 Score=28.45 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=37.9
Q ss_pred cccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCcccccccccccccC
Q 025634 184 HKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRLCCRP 248 (250)
Q Consensus 184 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~c~~p 248 (250)
..+.+|+.++|.- . ++..||=|.|.++.... .+.|.|-.=++.+.|++.+|..-|
T Consensus 64 ~~~~~G~~c~a~~-~-~d~~WyRa~V~~~~~~~--------~~~V~~vDyGn~~~v~~~~l~~l~ 118 (226)
T 4b9x_A 64 FKAEIGRPCCAFF-S-GDGNWYRALVKEILPSG--------NVKVHFVDYGNVEEVTTDQLQAIL 118 (226)
T ss_dssp CCCCTTCEEEEEE-T-TTTEEEEEEEEEECSSS--------EEEEECTTTCCEEEEEGGGEECCC
T ss_pred CCCCCCCEEEEEE-C-CCCeEEEEEEEEECCCC--------eEEEEEEecCCEEEEEHHHhccCh
Confidence 3567899766543 2 34589999999986321 356777766777788888886533
No 224
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=45.42 E-value=54 Score=23.94 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=25.8
Q ss_pred cccccccccCceEEEEeeeCCcceeEeeEEeeeee
Q 025634 180 PSDCHKLKVGGHVLCFQERRDQGIHYDAHIAEIHR 214 (250)
Q Consensus 180 ~~eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r 214 (250)
..+..+..+|+.|||-- .+-+||-|.|..|..
T Consensus 8 ~~~~~~f~vGddVLA~w---tDGl~Y~gtI~~V~~ 39 (66)
T 2eqj_A 8 KKPACKFEEGQDVLARW---SDGLFYLGTIKKINI 39 (66)
T ss_dssp CCCCCCSCTTCEEEEEC---TTSCEEEEEEEEEET
T ss_pred ccccccccCCCEEEEEE---ccCcEEEeEEEEEcc
Confidence 33456889999999865 457999999999984
No 225
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=44.66 E-value=39 Score=25.29 Aligned_cols=38 Identities=8% Similarity=0.097 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHhCCCC
Q 025634 14 GFTKTELEKMEKLLMES--KDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~--~~~y~~~~~rq~LA~~f~lS~ 51 (250)
.+|++|++++.++|... ++.+++..+...+-.+++++.
T Consensus 8 ~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~ 47 (106)
T 1eh2_A 8 AVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPV 47 (106)
T ss_dssp SSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCH
Confidence 47899999999999763 567888888888777777765
No 226
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=44.62 E-value=33 Score=25.80 Aligned_cols=38 Identities=8% Similarity=0.160 Sum_probs=28.1
Q ss_pred ccCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCC
Q 025634 13 TGFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCS 50 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS 50 (250)
+.||++|+.+|.++|... ++.+++..+...+...++..
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~ 43 (179)
T 2f2o_A 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 43 (179)
T ss_dssp ---CCSHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCC
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC
Confidence 358889999999999864 46688888888887777654
No 227
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.46 E-value=15 Score=26.26 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=32.7
Q ss_pred CCceeeeeeeheeeecc---cC--cceEEEEecCCCCCcccceec
Q 025634 128 DGAWYDVDMFLAHRFLD---CG--EAEVRVRFVGFGADEDEWVNV 167 (250)
Q Consensus 128 D~AWYdV~~fl~hR~~~---~g--e~ev~Vrf~gFg~eeDEw~~v 167 (250)
+-.||.|.-.|++|... .| ..+..|+..|++.++.-|=+.
T Consensus 8 ~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~ 52 (68)
T 2epb_A 8 NPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELE 52 (68)
T ss_dssp CSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEET
T ss_pred CCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccc
Confidence 44689999999999752 36 678999999999999999653
No 228
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=44.29 E-value=55 Score=24.79 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=31.5
Q ss_pred CccCCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhC
Q 025634 12 FTGFTKTELEKMEKLLMES-KDDLLSKEFCQKIAKSFS 48 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~-~~~y~~~~~rq~LA~~f~ 48 (250)
.+.||.+||.+|=+.|... ++.+++..+...+-..++
T Consensus 19 ~~~~~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~~ 56 (190)
T 1fpw_A 19 STYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFF 56 (190)
T ss_dssp TCCSTHHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHHC
T ss_pred hcCCCHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHHc
Confidence 4689999999999999876 688999988888877774
No 229
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=44.15 E-value=30 Score=25.70 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=28.3
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCC
Q 025634 14 GFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 51 (250)
.+|.+|+.+|.++|... ++.+++..+...+-...+++.
T Consensus 7 ~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~ 47 (111)
T 2kgr_A 7 AVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQ 47 (111)
T ss_dssp SSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCH
Confidence 47899999999999853 567888877777666555553
No 230
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=43.76 E-value=32 Score=24.77 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCC
Q 025634 16 TKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCS 50 (250)
Q Consensus 16 T~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS 50 (250)
|++|+.+|.++|... ++.+++..+...+...++..
T Consensus 1 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 38 (142)
T 2bl0_C 1 GDDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVR 38 (142)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC
Confidence 467888888888763 55678887777776666654
No 231
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=43.63 E-value=32 Score=27.16 Aligned_cols=59 Identities=7% Similarity=-0.010 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHhCCCC------------cCCCCCccchhHHHHHHhhhc
Q 025634 14 GFTKTELEKMEKLLMES--KDDLLSKEFCQKIAKSFSCSA------------GRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~--~~~y~~~~~rq~LA~~f~lS~------------~RaGK~~Vq~~QVk~WFQNRR 72 (250)
..|++|.++++++|... ++.+++.++...+=.+.+|+. +..|++...+=-+--|+-+++
T Consensus 26 ~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li~~~ 98 (121)
T 3fia_A 26 AITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLK 98 (121)
T ss_dssp CCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHHH
Confidence 47999999999999865 467888888877777778765 334554444444445555543
No 232
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=42.04 E-value=59 Score=24.68 Aligned_cols=40 Identities=8% Similarity=0.122 Sum_probs=30.4
Q ss_pred CccC-CHHHHHHHHHHHHh---hCCCCCCHHHHH-----HHHHHhCCCC
Q 025634 12 FTGF-TKTELEKMEKLLME---SKDDLLSKEFCQ-----KIAKSFSCSA 51 (250)
Q Consensus 12 Rt~F-T~~Ql~eLEk~f~~---~~~~y~~~~~rq-----~LA~~f~lS~ 51 (250)
.+.| |++|+.+|+++|.. .++.+++..+.. .+...++..+
T Consensus 10 ~~~~~s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~ 58 (195)
T 1qv0_A 10 KTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATP 58 (195)
T ss_dssp SCCTTCHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCH
T ss_pred CcccCCHHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCc
Confidence 4555 99999999999985 357789998887 4556666653
No 233
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=41.39 E-value=29 Score=25.42 Aligned_cols=38 Identities=3% Similarity=-0.023 Sum_probs=27.9
Q ss_pred ccCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCC
Q 025634 13 TGFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCS 50 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS 50 (250)
+.||++|+.+|+++|... ++.+++..+...+...++..
T Consensus 12 ~~ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~ 52 (162)
T 1top_A 12 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN 52 (162)
T ss_dssp HHSCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHHTTCC
T ss_pred hhcCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCC
Confidence 468999999999999874 35567776666666666543
No 234
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=41.00 E-value=24 Score=33.90 Aligned_cols=45 Identities=22% Similarity=0.393 Sum_probs=37.4
Q ss_pred ceeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceec
Q 025634 118 EMEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNV 167 (250)
Q Consensus 118 ~~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v 167 (250)
.|-+||....+-...=|++.. .+. | ..|+|+|.|...+.|+|+++
T Consensus 370 GMKLEAvD~~np~~icvATV~--~v~--~-~~l~i~fDgw~~~~d~w~~~ 414 (456)
T 3f70_A 370 GMKLEAVDLMEPRLICVATVK--RVV--H-RLLSIHFDGWDSEYDQWVDC 414 (456)
T ss_dssp TCEEEEECTTSTTCEEEEEEE--EEE--T-TEEEEEETTSCGGGCEEEET
T ss_pred CCEEEeecCCCCCcEEEEEEE--Eec--C-CEEEEEeCCCCCCCCeEeec
Confidence 388999999999988888863 232 4 38999999999999999984
No 235
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=40.94 E-value=15 Score=25.41 Aligned_cols=47 Identities=21% Similarity=0.211 Sum_probs=30.1
Q ss_pred CccCCHHHHHHHHH---HHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 12 FTGFTKTELEKMEK---LLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk---~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
++.+++++...++. .++...... ...+||+.+|+|. ..|..|-.+++
T Consensus 3 ~~~~~~~~~~~~~~~g~~l~~~R~~~----sq~~lA~~~gis~----------~~is~~E~g~~ 52 (86)
T 2ofy_A 3 RVPLTAEELERGQRLGELLRSARGDM----SMVTVAFDAGISV----------ETLRKIETGRI 52 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTS----CHHHHHHHHTCCH----------HHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHhCCCH----------HHHHHHHcCCC
Confidence 45577777655433 233322222 4568999999996 77888888765
No 236
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=40.64 E-value=28 Score=25.30 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=23.7
Q ss_pred EecccCCCceeeeeeeheeeecccCcceEEEEecCCCCC
Q 025634 122 EARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGAD 160 (250)
Q Consensus 122 EArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~e 160 (250)
-||- .|+.||...+.. +. |+....|.|-+ |..
T Consensus 14 mArW-~D~~yYpA~I~s---i~--~~~~Y~V~F~d-G~~ 45 (67)
T 3p8d_A 14 LACW-SDCRFYPAKVTA---VN--KDGTYTVKFYD-GVV 45 (67)
T ss_dssp EEEC-TTSCEEEEEEEE---EC--TTSEEEEEETT-SCE
T ss_pred EEEc-CCCCEeeEEEEE---EC--CCCeEEEEEeC-Cce
Confidence 4776 999999999872 33 33489999977 554
No 237
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=40.59 E-value=49 Score=23.18 Aligned_cols=45 Identities=22% Similarity=0.148 Sum_probs=34.6
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC-CCCcCCCCCccchhHHHHHHhhh
Q 025634 11 VFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFS-CSAGRAGKPVVKWTEVQSWFQSR 71 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~-lS~~RaGK~~Vq~~QVk~WFQNR 71 (250)
.+..||++|-..|.+++...++ .=..||..|. -|+ .||++-|++-
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~------~W~~Ia~~~~~Rt~----------~q~k~r~~~~ 53 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR------RWTKISKLIGSRTV----------LQVKSYARQY 53 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS------CHHHHHHHHSSSCH----------HHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCc------CHHHHHHHcCCCCH----------HHHHHHHHHH
Confidence 4678999999999999999764 3577888873 444 8999765554
No 238
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=40.23 E-value=20 Score=27.96 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=30.1
Q ss_pred CccCCHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHhCCC
Q 025634 12 FTGFTKTELEKMEKLLME---SKDDLLSKEFCQKIAKSFSCS 50 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~f~lS 50 (250)
.+.||++|+.+|.++|.. .++.+++..+...+ ..++..
T Consensus 20 ~~~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~-~~lg~~ 60 (202)
T 2bec_A 20 ETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQI-GALAVN 60 (202)
T ss_dssp HHCCCHHHHHHHHHHHHHHCSSCSSCCCHHHHHTC-HHHHHS
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHH-HhcCCC
Confidence 467999999999999987 36789999888776 555543
No 239
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=40.14 E-value=14 Score=29.34 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=16.4
Q ss_pred CcCCCCCccchhHHHHHHhhh
Q 025634 51 AGRAGKPVVKWTEVQSWFQSR 71 (250)
Q Consensus 51 ~~RaGK~~Vq~~QVk~WFQNR 71 (250)
--|+|.+++|- .|+.|.||=
T Consensus 42 glragsmalqg-dvkvwmqnl 61 (127)
T 2jpf_A 42 GLRAGSMALQG-DVKVWMQNL 61 (127)
T ss_dssp CCSSSSSSSCH-HHHHHHHHH
T ss_pred hhhhhhhhhcc-cHHHHHHHH
Confidence 34899999985 689999993
No 240
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=39.93 E-value=46 Score=22.57 Aligned_cols=35 Identities=6% Similarity=0.124 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHhCC
Q 025634 15 FTKTELEKMEKLLME---SKDDLLSKEFCQKIAKSFSC 49 (250)
Q Consensus 15 FT~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~f~l 49 (250)
.+++++.+|.++|.. .++.+++..+...+...++.
T Consensus 3 ~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~ 40 (92)
T 2kn2_A 3 MDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGE 40 (92)
T ss_dssp CCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCC
Confidence 355677778877765 35668888888888777763
No 241
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=39.87 E-value=32 Score=31.46 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=37.3
Q ss_pred ceeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 118 EMEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 118 ~~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
.|-.||-..++-.-.=|++.. +..+-.|+|+|.|..++.|.|+++.
T Consensus 251 gmkLEAvD~~~p~licvATV~-----~v~g~~l~v~fDgw~~~~d~w~~~~ 296 (324)
T 3ut1_A 251 KMKLEVVDKRNPMFIRVATVA-----DTDDHRVKVHFDGWNNCYDYWIDAD 296 (324)
T ss_dssp TCEEEEECSSSTTCEEEEEEE-----EECSSEEEEEETTSCGGGCEEEETT
T ss_pred CCeeeccCCCCCCceeEEEEE-----EecCCEEEEEeCCCCCCCCEEEeCC
Confidence 488999999998877787763 3333489999999999999999854
No 242
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=38.65 E-value=59 Score=26.35 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=30.5
Q ss_pred CccCCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhC
Q 025634 12 FTGFTKTELEKMEKLLMES-KDDLLSKEFCQKIAKSFS 48 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~-~~~y~~~~~rq~LA~~f~ 48 (250)
.+.||.+||.+|-+.|... ++.+++..+...+-..++
T Consensus 45 ~~~~s~~ei~~l~~~Fd~~d~~G~I~~~E~~~~l~~l~ 82 (224)
T 1s1e_A 45 QTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFF 82 (224)
T ss_dssp HSSCCHHHHHHHHHHHHHHCTTSCBCHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhc
Confidence 3569999999999999886 778899888877776665
No 243
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.52 E-value=42 Score=25.54 Aligned_cols=50 Identities=16% Similarity=0.058 Sum_probs=31.9
Q ss_pred ccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEEecCCcccccccccc
Q 025634 185 KLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRRL 244 (250)
Q Consensus 185 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~~ 244 (250)
..+.|+.|.| +.. ++..||=|.|..+.+-. . +.|.+..=.+++.|++.+|
T Consensus 21 ~~k~g~~vaa-k~~-d~n~WyRakV~~v~~~~------~--veVl~~DyGn~~~V~~~~L 70 (85)
T 2eqk_A 21 KWENDMHCAV-KIQ-DKNQWRRGQIIRMVTDT------L--VEVLLYDVGVELVVNVDCL 70 (85)
T ss_dssp CCCSSCEEEE-ECS-SSCCEEEEEEEEECSSS------E--EEEECTTTCCEEEEETTTE
T ss_pred CccCCCEEEE-EeC-CCCeEEEEEEEEecCCC------e--EEEEEEccCCEEEEEcccc
Confidence 5678887665 332 33489999999998432 2 4455444445667777654
No 244
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.95 E-value=77 Score=21.66 Aligned_cols=45 Identities=18% Similarity=0.122 Sum_probs=33.9
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhh
Q 025634 11 VFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSR 71 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNR 71 (250)
.+..||++|=..|-++.+..++ .=.+||+-.+-|+ +|+++=|+|-
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~------~W~~Ia~~~gRt~----------~qcr~Rw~~~ 52 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT------QWRTIAPIIGRTA----------AQCLEHYEFL 52 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT------CHHHHHHHHSSCH----------HHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC------CHHHHhcccCcCH----------HHHHHHHHHH
Confidence 3678999999999999888643 3577888667776 8998655544
No 245
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=37.93 E-value=18 Score=29.69 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.4
Q ss_pred CcceEEEEecCCCCCcccceec
Q 025634 146 GEAEVRVRFVGFGADEDEWVNV 167 (250)
Q Consensus 146 ge~ev~Vrf~gFg~eeDEw~~v 167 (250)
+.+...|+|.|+..--||||..
T Consensus 73 ~~~~Y~VHY~GWn~~WDEWV~e 94 (130)
T 3e9g_A 73 NGKCFFIHYQGWKSSWDEWVGY 94 (130)
T ss_dssp TSCEEEEEETTSCGGGCEEEET
T ss_pred cCceEEEEeCCCCCChhhccCH
Confidence 4468999999999999999973
No 246
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=37.71 E-value=47 Score=24.53 Aligned_cols=42 Identities=10% Similarity=0.238 Sum_probs=33.1
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhh
Q 025634 13 TGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSR 71 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNR 71 (250)
..+|.++...+-.++.. +. -..++|+.||+|. ..|..|++.-
T Consensus 5 ~~~s~~~r~~i~~~~~~--G~-----s~~~ia~~lgis~----------~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL--NV-----SLHEMSRKISRSR----------HCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHT--TC-----CHHHHHHHHTCCH----------HHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHc--CC-----CHHHHHHHHCcCH----------HHHHHHHHcc
Confidence 46889998888888755 32 3578999999997 8899999753
No 247
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=37.51 E-value=1.1e+02 Score=23.05 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=31.6
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCC-cCCCCCccchhHHHHHHhhhcc
Q 025634 12 FTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSA-GRAGKPVVKWTEVQSWFQSRQQ 73 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~-~RaGK~~Vq~~QVk~WFQNRR~ 73 (250)
...++.++.+.+..++.++ ...+. .+||..|-.-. ... .+.+....|..|......
T Consensus 88 ~~~~~~~~~~~I~~~~~~~--~~~s~---~~i~~~l~~~~~~~~-g~~~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQN--PTMFA---WEIRDRLLAERVCDN-DTVPSVSSINRIIRTKVQ 144 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHC--TTCCH---HHHHHHHHHTTSSCT-TTSCCHHHHHHHHHCC--
T ss_pred CCCCCHHHHHHHHHHHHhC--cchhH---HHHHHHHHHhccccc-CCCcCHHHHHHHHHHHhc
Confidence 4568999999999998873 33443 33444440000 000 123445889999987653
No 248
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=36.15 E-value=78 Score=22.61 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=23.1
Q ss_pred cccccCceEEEEeeeCCcceeEeeEEeeeeecc
Q 025634 184 HKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRM 216 (250)
Q Consensus 184 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~ 216 (250)
.++.+|+-||+-. .+-+||-+.|.+|...+
T Consensus 2 ~~f~~GedVLarw---sDG~fYlGtI~~V~~~~ 31 (58)
T 4hcz_A 2 PRLWEGQDVLARW---TDGLLYLGTIKKVDSAR 31 (58)
T ss_dssp CSCCTTCEEEEEC---TTSCEEEEEEEEEETTT
T ss_pred CccccCCEEEEEe---cCCCEEeEEEEEEecCC
Confidence 3578999999754 34789999999997443
No 249
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=35.23 E-value=66 Score=24.76 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=34.7
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHh-CCCCcCCCCCccchhHHHHHHhh
Q 025634 11 VFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSF-SCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f-~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
.+..||++|-..|..++.++++. =..||+.| |-|+ .||++-|.+
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~~------W~~Ia~~l~gRt~----------~~~k~rw~~ 105 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGRQ------WAIIAKFFPGRTD----------IHIKNRWVT 105 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSC------HHHHHTTSTTCCH----------HHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHCcC------HHHHHHHcCCCCH----------HHHHHHHHH
Confidence 35689999999999999998653 57889888 6665 899854444
No 250
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=35.07 E-value=39 Score=25.79 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=28.7
Q ss_pred CCccCCHHHHHHHHHHHHhh--------C-C--CCCCHHHHHHHHHHhCCC
Q 025634 11 VFTGFTKTELEKMEKLLMES--------K-D--DLLSKEFCQKIAKSFSCS 50 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~--------~-~--~y~~~~~rq~LA~~f~lS 50 (250)
..+.||+.|+.+|.++|... + + .+++..+... -..++.+
T Consensus 10 ~~~~ls~~~~~~l~~~F~~~D~~~~~~~~~~~~G~i~~~el~~-l~~~g~~ 59 (183)
T 1dgu_A 10 DLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-LPELKAN 59 (183)
T ss_dssp CCCSCCHHHHHHHHHHHHHHSCSTTCSSCCCTTTCSCHHHHHT-STTSSSC
T ss_pred HHcCCCHHHHHHHHHHHHHhCccccccccccccCcCcHHHHHH-HHhhhcC
Confidence 46789999999999999984 3 4 6888876665 3444443
No 251
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=34.83 E-value=41 Score=30.72 Aligned_cols=46 Identities=20% Similarity=0.401 Sum_probs=36.6
Q ss_pred ceeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceecc
Q 025634 118 EMEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 118 ~~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
.|-+||-...+-..--|++.. ++ .|. .|+|+|.|...+.|.|++..
T Consensus 256 gmKLEavD~~~p~~ic~AtV~--~v--~~~-~l~v~fDgw~~~~d~w~~~d 301 (331)
T 1oz2_A 256 NMKLEAVDRRNPALIRVASVE--DV--EDH-RIKIHFDGWSHGYDFWIDAD 301 (331)
T ss_dssp TCEEEEECSSSTTCEEEEEEE--EE--CSS-EEEEEETTBCGGGCEEEETT
T ss_pred CceeEeecccCCCcEEeeEEE--EE--cCC-EEEEEeCCCCCcCCEEEECC
Confidence 388999999998877777653 22 354 79999999999999999853
No 252
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=34.57 E-value=35 Score=31.21 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=35.0
Q ss_pred eeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceec
Q 025634 119 MEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNV 167 (250)
Q Consensus 119 ~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v 167 (250)
|-+||--..+-..+=|++.. .++ |+ .|+|+|.|..++.|-|+++
T Consensus 153 mKLEavD~~np~~icvATV~--~v~--g~-r~~v~~Dg~~~~~D~w~~~ 196 (331)
T 1oz2_A 153 MKLEAVDRMNPSLVCVASVT--DVV--DS-RFLVHFDNWDDTYDYWCDP 196 (331)
T ss_dssp CEEEEECTTSTTCEEEEEEE--EEE--TT-EEEEEETTSCGGGCEEECT
T ss_pred cEEEeccCCCCCcEEEEEEE--Eee--CC-EEEEEeCCCCCccCEEEec
Confidence 88999998887777777753 232 44 7999999999999999873
No 253
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=34.48 E-value=48 Score=21.09 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=28.1
Q ss_pred cCC--HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHh
Q 025634 14 GFT--KTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQ 69 (250)
Q Consensus 14 ~FT--~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQ 69 (250)
.++ +++..++-.++.+ +. ...+||+.||+|. .-|..|.+
T Consensus 13 ~l~~~~~~~~~i~~l~~~--g~-----s~~eIA~~lgis~----------~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKM--GY-----TVQQIANALGVSE----------RKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHT--TC-----CHHHHHHHHTSCH----------HHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHc--CC-----CHHHHHHHHCcCH----------HHHHHHHH
Confidence 456 7777777666544 22 3678999999997 77888874
No 254
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=33.51 E-value=72 Score=23.73 Aligned_cols=48 Identities=17% Similarity=0.034 Sum_probs=37.3
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcccCC
Q 025634 11 VFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQDRP 76 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~k~~ 76 (250)
+...+|+.|.+.|.-+++. . ...+||+.+++|+ .-|+++.++=+.|..
T Consensus 31 ~~~~Lt~re~~Vl~l~~~G---~-----s~~EIA~~L~iS~----------~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 31 GDKRLSPKESEVLRLFAEG---F-----LVTEIAKKLNRSI----------KTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSSCCHHHHHHHHHHHHT---C-----CHHHHHHHHTSCH----------HHHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHcC---C-----CHHHHHHHHCcCH----------HHHHHHHHHHHHHHC
Confidence 4677999999999776543 1 2389999999997 889988887666654
No 255
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=33.35 E-value=7.8 Score=26.62 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=26.8
Q ss_pred eeeeeheeeecccCcc-eEEEEecCCCCCcccceecc
Q 025634 133 DVDMFLAHRFLDCGEA-EVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 133 dV~~fl~hR~~~~ge~-ev~Vrf~gFg~eeDEw~~v~ 168 (250)
.|.-.|.||+...|.. +..|+..|| +++-|-+..
T Consensus 2 ~VE~Ild~r~~~~g~~~~YlVKWkgy--~~~TWEp~~ 36 (54)
T 1x3p_A 2 VAESVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQD 36 (54)
T ss_dssp CSSCCCCBSSCSSSCCCCBCCCCSSS--SSCSCSTTC
T ss_pred eEEEEEEEEEcCCCcEEEEEEEECCC--CcCCccchH
Confidence 4566788998776877 899999999 678887654
No 256
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=33.10 E-value=12 Score=28.19 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=31.9
Q ss_pred CccCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCC
Q 025634 12 FTGFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 51 (250)
...+|++|+.++.++|... ++.+++.++...+-.+++++.
T Consensus 13 ~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~ 55 (110)
T 1iq3_A 13 PWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSI 55 (110)
T ss_dssp SCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSS
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCH
Confidence 4568899999999999874 567899988888877777665
No 257
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=32.98 E-value=83 Score=20.37 Aligned_cols=32 Identities=9% Similarity=0.202 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCC
Q 025634 15 FTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 15 FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~ 51 (250)
.+...|..+|+ +...|+.+...+||+.|+++.
T Consensus 35 is~~~i~~~e~-----g~~~~~~~~l~~la~~l~v~~ 66 (71)
T 2ewt_A 35 WKAVVVGSYER-----GDRAVTVQRLAELADFYGVPV 66 (71)
T ss_dssp SCHHHHHHHHH-----TCSCCCHHHHHHHHHHHTSCG
T ss_pred CCHHHHHHHHC-----CCCCCCHHHHHHHHHHHCcCH
Confidence 44444444443 346799999999999999986
No 258
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=32.37 E-value=49 Score=25.42 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhh
Q 025634 16 TKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 16 T~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
+++|+.+|+++|... ++.+++..+...+-..++.++ .+++..|+.
T Consensus 34 ~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~----------~~~~~~~~~ 81 (180)
T 3mse_B 34 INNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKK----------WDINRILQA 81 (180)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCH----------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCH----------HHHHHHHHH
Confidence 378999999999754 567899999888888888765 566665653
No 259
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=31.41 E-value=72 Score=28.01 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=37.4
Q ss_pred ccCceEEEEeeeCCcceeEeeEEeeeeecc--CC--CCceeeEEEEEEecCCcccccccc
Q 025634 187 KVGGHVLCFQERRDQGIHYDAHIAEIHRRM--HD--IRGCRCLFLVRYNHDNTEERVRLR 242 (250)
Q Consensus 187 ~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~--Hd--~~~C~C~F~Vr~~h~~~ee~v~~~ 242 (250)
+.|++|-|-..+ ...||-|+|+.|.++. ++ ... ..|-|.|+..|..+.+.+.
T Consensus 4 ki~~~vd~~d~~--~Gawfea~i~~v~~~~~~~~~~~d~--~~y~v~y~~~~~~~~~~~~ 59 (226)
T 3ask_A 4 KVNEYVDARDTN--MGAWFEAQVVRVTRKAPSRPALEED--VIYHVKYDDYPENGVVQMN 59 (226)
T ss_dssp CTTCEEEEECTT--TCCEEEEEEEEEEECC------CCC--EEEEEEETTCGGGCEEEEE
T ss_pred ccCceEEeeecC--CCceeEEEEEEEeccccccCCCCCc--eEEEeecccCcccCceecc
Confidence 679999875533 3689999999999854 12 123 8999999998866555443
No 260
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=31.19 E-value=83 Score=20.33 Aligned_cols=44 Identities=27% Similarity=0.312 Sum_probs=32.6
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHh-CCCCcCCCCCccchhHHHHHHhh
Q 025634 12 FTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSF-SCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f-~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
+..||++|-..|.++.+.+++. -=..||+.| +-|+ +|++.=++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~-----~W~~Ia~~~~~Rt~----------~qcr~Rw~~ 47 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTD-----DWKVIANYLPNRTD----------VQCQHRWQK 47 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSS-----CHHHHHHTSTTCCH----------HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHcCCCCH----------HHHHHHHHH
Confidence 5679999999999999997641 357888888 4454 888854443
No 261
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=30.81 E-value=24 Score=29.49 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=34.4
Q ss_pred Cceeeeeeeheeeec----ccCcceEEEEecCCCCCcccceecc
Q 025634 129 GAWYDVDMFLAHRFL----DCGEAEVRVRFVGFGADEDEWVNVK 168 (250)
Q Consensus 129 ~AWYdV~~fl~hR~~----~~ge~ev~Vrf~gFg~eeDEw~~v~ 168 (250)
..|+.|.-.|++|.. ..|..+..|++.|++.++--|-...
T Consensus 118 ~e~~~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~ 161 (177)
T 2h1e_A 118 EEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENAT 161 (177)
T ss_dssp HHTTSEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHH
T ss_pred cccceeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccChH
Confidence 478999999999983 5788899999999999999997643
No 262
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=30.68 E-value=70 Score=22.80 Aligned_cols=41 Identities=10% Similarity=-0.011 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhh
Q 025634 14 GFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSR 71 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNR 71 (250)
.+|.++..++-.++.+ +. -..++|+.|++|. ..|..|++.-
T Consensus 17 ~~s~~~r~~i~~~~~~--g~-----s~~~ia~~lgis~----------~Tv~~w~~~~ 57 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD--GI-----RPCVISRQLRVSH----------GCVSKILNRY 57 (128)
T ss_dssp CCCHHHHHHHHHHHHT--TC-----CHHHHHHHHTCCH----------HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc--CC-----CHHHHHHHHCcCH----------HHHHHHHHHH
Confidence 5888888888777754 22 2468999999997 8899998753
No 263
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=30.39 E-value=84 Score=23.10 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=35.0
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHh-CCCCcCCCCCccchhHHHHHHhh
Q 025634 11 VFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSF-SCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f-~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
.+..||++|-..|.+++.++++. =..||+.| |-|+ .||++-|.+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~------W~~Ia~~l~gRt~----------~~~k~rw~~ 99 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNR------WAEIAKLLPGRTD----------NAIKNHWNS 99 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSC------HHHHHTTCTTCCH----------HHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCC------HHHHHHHcCCCCH----------HHHHHHHHH
Confidence 36789999999999999998642 57888888 6665 899966654
No 264
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=30.22 E-value=80 Score=23.93 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=30.7
Q ss_pred CccCCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhCC
Q 025634 12 FTGFTKTELEKMEKLLMES-KDDLLSKEFCQKIAKSFSC 49 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~-~~~y~~~~~rq~LA~~f~l 49 (250)
.+.||.+||.+|=+.|... ++.+++..+...+...++.
T Consensus 19 ~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~ 57 (193)
T 1bjf_A 19 STDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFP 57 (193)
T ss_dssp HSSCCHHHHHHHHHHHHHHSTTSEEEHHHHHHHHTTTSS
T ss_pred HcCCCHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHhcC
Confidence 4679999999999999876 6788998888887776654
No 265
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=30.00 E-value=33 Score=21.98 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 40 CQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 40 rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
..+||+.+++|. ..|..|..+++
T Consensus 21 ~~~lA~~~gis~----------~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSN----------VAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTSS
T ss_pred HHHHHHHHCCCH----------HHHHHHHcCCC
Confidence 578999999997 88999998864
No 266
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=29.80 E-value=30 Score=22.99 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHhC
Q 025634 17 KTELEKMEKLLME---SKDDLLSKEFCQKIAKSFS 48 (250)
Q Consensus 17 ~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~f~ 48 (250)
+++..+|..+|.. .++.+++..+...+...++
T Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~ 37 (83)
T 1yx7_A 3 CKVKAELEAAFKKLDANGDGYVTALELQTFMVTLD 37 (83)
T ss_dssp SCSCTHHHHHHHHHSSSCSSSCSHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHc
Confidence 3455667777764 4567899988888888877
No 267
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=29.77 E-value=55 Score=24.02 Aligned_cols=35 Identities=3% Similarity=0.047 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHhCCC
Q 025634 16 TKTELEKMEKLLME---SKDDLLSKEFCQKIAKSFSCS 50 (250)
Q Consensus 16 T~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~f~lS 50 (250)
|++|+.+|.++|.. .++.+++..+...+-..++..
T Consensus 1 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 38 (143)
T 2obh_A 1 TEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFE 38 (143)
T ss_dssp CHHHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 56788888888875 245666666666666666554
No 268
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=29.26 E-value=25 Score=29.44 Aligned_cols=33 Identities=15% Similarity=0.371 Sum_probs=26.3
Q ss_pred eeeeheeeecc------------------cCcceEEEEecCCCCCccccee
Q 025634 134 VDMFLAHRFLD------------------CGEAEVRVRFVGFGADEDEWVN 166 (250)
Q Consensus 134 V~~fl~hR~~~------------------~ge~ev~Vrf~gFg~eeDEw~~ 166 (250)
|...|+||.-+ .|+.+..|++.||+.-+..|+.
T Consensus 15 id~v~~hr~~~~~~~~~~~~~~~~~~~~~~~~~EYlVKWKg~Sy~HnTWe~ 65 (177)
T 2h1e_A 15 IDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWET 65 (177)
T ss_dssp EEEEEEEEECTTSCGGGGCCSSCCCHHHHHHHEEEEEEETTSCGGGCEEEC
T ss_pred ceeeecCCccccccccccccccCcccCCCCCceEEEEEECCCccccCeecC
Confidence 55677888754 2235999999999999999988
No 269
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=29.15 E-value=34 Score=21.78 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 40 CQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 40 rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
..+||+.+|.|. ..|..|..+++
T Consensus 17 ~~~lA~~~gis~----------~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSR----------QTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTSC
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 478999999997 88999998864
No 270
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=29.03 E-value=21 Score=35.48 Aligned_cols=35 Identities=14% Similarity=0.330 Sum_probs=30.4
Q ss_pred eeeeeeheeeecc------------------cCcceEEEEecCCCCCccccee
Q 025634 132 YDVDMFLAHRFLD------------------CGEAEVRVRFVGFGADEDEWVN 166 (250)
Q Consensus 132 YdV~~fl~hR~~~------------------~ge~ev~Vrf~gFg~eeDEw~~ 166 (250)
|.|...|.||+.. .|+.|..|++.||+..+..|..
T Consensus 38 ~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~ 90 (800)
T 3mwy_W 38 HGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWET 90 (800)
T ss_dssp CBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEEC
T ss_pred CchhhhccccccccccCCccccccCcCcCCCcCceEEEEEeCCcceeeccccC
Confidence 5689999999961 5677999999999999999966
No 271
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=28.83 E-value=58 Score=24.74 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=24.1
Q ss_pred EEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCC
Q 025634 121 FEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGAD 160 (250)
Q Consensus 121 fEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~e 160 (250)
-.||= .|+.||...+.. ++ |+..+.|.|-+ |..
T Consensus 28 VlArW-~D~~yYPAkI~s---V~--~~~~YtV~F~D-G~~ 60 (85)
T 3qii_A 28 VLACW-SDCRFYPAKVTA---VN--KDGTYTVKFYD-GVV 60 (85)
T ss_dssp EEEEC-TTSCEEEEEEEE---EC--TTSEEEEEETT-SCE
T ss_pred EEEEe-CCCCEeeEEEEE---EC--CCCeEEEEEeC-CCe
Confidence 34676 999999999873 33 33489999977 543
No 272
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=28.75 E-value=49 Score=31.43 Aligned_cols=45 Identities=24% Similarity=0.434 Sum_probs=37.6
Q ss_pred ceeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCcccceec
Q 025634 118 EMEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVNV 167 (250)
Q Consensus 118 ~~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~v 167 (250)
.|-+||-...+-...=|++.. .+. | .-|+|+|-|..++.|.|+++
T Consensus 366 GMKLEAvD~~np~~IcvATV~--~v~--~-~~l~v~fDgw~~~~d~w~~~ 410 (437)
T 3feo_A 366 GMKLEAVDLMEPRLICVATVT--RII--H-RLLRIHFDGWEEEYDQWVDC 410 (437)
T ss_dssp TCEEEEECTTSTTCEEEEEEE--EEE--T-TEEEEEETTSCGGGCEEEET
T ss_pred CCEEEeecCCCCCcEEEEEEe--EEc--C-CEEEEEECCCCCcCCeEEeC
Confidence 388999999999998888874 332 4 38999999999999999875
No 273
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=28.62 E-value=94 Score=24.95 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=28.9
Q ss_pred ccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEE-ecCCccc
Q 025634 185 KLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRY-NHDNTEE 237 (250)
Q Consensus 185 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~-~h~~~ee 237 (250)
.+.+|+++++.- . ++..||-|.|.++.... .+.|.| |.|+.+.
T Consensus 47 ~~~~G~~c~A~~-~-~d~~wyRa~I~~~~~~~--------~~~V~fvDyGn~~~ 90 (169)
T 3ntk_A 47 DLKEGALCVAQF-P-EDEVFYRAQIRKVLDDG--------KCEVHFIDFGNNAV 90 (169)
T ss_dssp CCCTTCEEEEEE-T-TTTEEEEEEEEEECSTT--------CEEEEETTTTEEEE
T ss_pred CCCCCCEEEEEE-C-CCCcEEEEEEEEECCCC--------EEEEEEEecCCeEE
Confidence 678999877643 2 25689999999987421 345666 4555544
No 274
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=28.56 E-value=1.1e+02 Score=23.15 Aligned_cols=34 Identities=9% Similarity=0.119 Sum_probs=28.7
Q ss_pred cCCHHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHh
Q 025634 14 GFTKTELEKMEKLLMES----KDDLLSKEFCQKIAKSF 47 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~----~~~y~~~~~rq~LA~~f 47 (250)
.+|+.++.+|+++|... ++.+++..+...+..++
T Consensus 5 ~ls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~ 42 (191)
T 2ccm_A 5 QLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKI 42 (191)
T ss_dssp CCCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHH
T ss_pred hccHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHH
Confidence 47899999999999765 66789998888888777
No 275
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=28.51 E-value=1.4e+02 Score=20.44 Aligned_cols=52 Identities=8% Similarity=0.073 Sum_probs=36.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhh
Q 025634 7 RQRSVFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 7 ~~Rr~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
..++.+..||++|-+.|-.+.+.++.. -=..||..|.++ +| +..|++.=+.|
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~-----~W~~Ia~~~~~~-~R------t~~qcr~Rw~~ 56 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEG-----NWSKILLHYKFN-NR------TSVMLKDRWRT 56 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSS-----CHHHHHHHSCCS-SC------CHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCC-----cHHHHHHHcCcC-CC------CHHHHHHHHHH
Confidence 355678999999999999999997621 357788888742 22 23788753333
No 276
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=28.45 E-value=41 Score=26.32 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=31.8
Q ss_pred CCCCccCCHHHHHHHHHHH-HhhCCCCCCHHHHHHHHH----HhCCCCcCCCCCccchhHHHHHHhhh
Q 025634 9 RSVFTGFTKTELEKMEKLL-MESKDDLLSKEFCQKIAK----SFSCSAGRAGKPVVKWTEVQSWFQSR 71 (250)
Q Consensus 9 Rr~Rt~FT~~Ql~eLEk~f-~~~~~~y~~~~~rq~LA~----~f~lS~~RaGK~~Vq~~QVk~WFQNR 71 (250)
++.|..+|.+|-.+|=..+ ++++ -+ ...+||. .|++.. ....|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~--~~---~q~~la~wa~~~f~~~i--------s~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQN--RS---GQQDLIEWFREKFGKDI--------SQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSS--CC---CHHHHHHHHHHHHSSCC--------SSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCC--CC---CHHHHHHHHHHHHCCCC--------cHHHHHHHHhhH
Confidence 4578999999998888888 4432 22 2345677 884422 114566666665
No 277
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=28.19 E-value=1.4e+02 Score=22.93 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=32.6
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhh
Q 025634 13 TGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
..+|.++..++-.++.+ +. -..+||+.|++|. ..|..|.+.
T Consensus 24 ~~~s~e~r~~ii~l~~~--G~-----s~~~IA~~lgis~----------~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQ--GV-----RPCDISRQLRVSH----------GCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHH--TC-----CHHHHHHHHTCCS----------HHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHc--CC-----CHHHHHHHHCcCH----------HHHHHHHHH
Confidence 46899988888888865 32 3568999999998 889999974
No 278
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=27.87 E-value=47 Score=25.86 Aligned_cols=32 Identities=28% Similarity=0.679 Sum_probs=22.4
Q ss_pred EeeeeeccCCCCceeeEEEEEEecCCccccccccc
Q 025634 209 IAEIHRRMHDIRGCRCLFLVRYNHDNTEERVRLRR 243 (250)
Q Consensus 209 V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~ 243 (250)
|..|+-+.|+. +.+|.|+||= |++.+....++
T Consensus 63 i~~i~V~~h~~-~srCFfvvR~--DGt~~DFSy~K 94 (104)
T 2k0m_A 63 VRNFEVRSADY-GTQCFWILRT--DGSEERFSYKK 94 (104)
T ss_dssp EEEEEEEESSS-SCEEEEEEET--TSCEEECCGGG
T ss_pred cceEEEecCCC-CCcEEEEEEe--CCCeeeeeHHH
Confidence 56677777865 8999999964 56666655443
No 279
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=27.78 E-value=33 Score=28.94 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=33.4
Q ss_pred Cceeeeeeeheeeec--ccCcceEEEEecCCCCCcccceec
Q 025634 129 GAWYDVDMFLAHRFL--DCGEAEVRVRFVGFGADEDEWVNV 167 (250)
Q Consensus 129 ~AWYdV~~fl~hR~~--~~ge~ev~Vrf~gFg~eeDEw~~v 167 (250)
..|+.|.-.|+||.. ..|..+..|.+.|++.++.-|-..
T Consensus 128 ~e~~~VErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~~ 168 (187)
T 2b2y_A 128 KQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDG 168 (187)
T ss_dssp HHTTSEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECH
T ss_pred hhcceeEEEEEeeeecCCCCcEEEEEEECCCChhhCcccch
Confidence 457889999999986 568899999999999999889763
No 280
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=27.69 E-value=41 Score=27.50 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=20.8
Q ss_pred ccccCceEEEEeeeCCcceeEeeEEeeee
Q 025634 185 KLKVGGHVLCFQERRDQGIHYDAHIAEIH 213 (250)
Q Consensus 185 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~ 213 (250)
...+|..|+||+.+. -|.|.|++|.
T Consensus 7 ~f~~gE~VlcfHg~~----~YeAKIl~i~ 31 (130)
T 3e9g_A 7 EFALGGRCLAFHGPL----MYEAKILKIW 31 (130)
T ss_dssp CCCTTCEEEEEETTE----EEEEEEEEEE
T ss_pred cccCCCEEEEEeCCc----ceeeEEEEee
Confidence 567999999999643 5999999993
No 281
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=27.44 E-value=38 Score=25.86 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=32.1
Q ss_pred CCCCCCCCCCCCccCCHHHH-HHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhh
Q 025634 1 MDRLRPRQRSVFTGFTKTEL-EKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSR 71 (250)
Q Consensus 1 ~~r~r~~~Rr~Rt~FT~~Ql-~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNR 71 (250)
|-+..+++++.+..-|.++| ..-.++|.+++ | + ....+||+..|.|. .-|-..|.||
T Consensus 1 M~~~~~~~~~~~~~~~r~~Il~aA~~lf~~~G--~-~-~s~~~IA~~agvs~----------~tlY~~F~sK 58 (194)
T 2q24_A 1 MSDATKRPLRADAQRNRDKILAAAVRVFSEEG--L-D-AHLERIAREAGVGS----------GTLYRNFPTR 58 (194)
T ss_dssp ---------------CHHHHHHHHHHHHHHHC--T-T-CCHHHHHHHTTCCH----------HHHHHHCCSH
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHHhcC--c-C-CCHHHHHHHhCCCh----------HHHHHHcCCH
Confidence 33333344444555566665 45678888864 5 5 68899999999996 5577778777
No 282
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=27.41 E-value=35 Score=25.92 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhh
Q 025634 15 FTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSR 71 (250)
Q Consensus 15 FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNR 71 (250)
|+++|....+++...... ++....+||+.|++++ +.+..|++-=
T Consensus 1 ~~~~~~~l~~~i~~~~~~---~p~~~~~la~~~~~~~----------~~~~~~l~~l 44 (121)
T 2pjp_A 1 FSEEQQAIWQKAEPLFGD---EPWWVRDLAKETGTDE----------QAMRLTLRQA 44 (121)
T ss_dssp CCHHHHHHHHHHGGGCSS---SCEEHHHHHHHTTCCH----------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh---CCCCHHHHHHHhCCCH----------HHHHHHHHHH
Confidence 567787777777777533 2224448999999997 8888887654
No 283
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=27.30 E-value=77 Score=30.11 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=57.6
Q ss_pred eeEEecccCC----CceeeeeeeheeeecccCcceEEEEecCCCC--Ccccceecc--------------ccc-------
Q 025634 119 MEFEARSSKD----GAWYDVDMFLAHRFLDCGEAEVRVRFVGFGA--DEDEWVNVK--------------NAV------- 171 (250)
Q Consensus 119 ~efEArs~~D----~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~--eeDEw~~v~--------------~~~------- 171 (250)
|-+|+....+ ...+-+.+. --+|- -|++||.||++ ..|=|+|+. +.+
T Consensus 47 mklEv~~~~~~~~~~~yWvA~V~-----~~~G~-rllLry~G~~~d~~~DFW~~~~s~~ihpvGwc~~~~~~l~PP~~i~ 120 (437)
T 3feo_A 47 VRVEVPNTDCSLPTKVFWIAGIV-----KLAGY-NALLRYEGFENDSGLDFWCNICGSDIHPVGWCAASGKPLVPPRTIQ 120 (437)
T ss_dssp CEEEEECSCC----CCEEEEEEE-----EEETT-EEEEEETTCTTCCTTCEEEETTSTTCEETTHHHHHTCCBCCCGGGT
T ss_pred CEEEEecCCCCCCcCceEEEEEe-----eecce-EEEEEecccCCCCCCCcceeCCCccccccccHhhcCCEecCCcccc
Confidence 6777776655 233333332 22454 89999999986 478999831 111
Q ss_pred ---------------cccCCCCCc------ccccccccCceEEEEeeeCCcceeEeeEEeeeeeccCCCCceeeEEEEEE
Q 025634 172 ---------------RERSVPLEP------SDCHKLKVGGHVLCFQERRDQGIHYDAHIAEIHRRMHDIRGCRCLFLVRY 230 (250)
Q Consensus 172 ---------------R~rS~p~e~------~eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~ 230 (250)
-.+++|.+- +....+++|-.|-+.-. .+-..|.=|.|..|- --+++|+|
T Consensus 121 ~~~~~W~~yL~~~ltga~t~P~~~f~~~~~~~~~~F~~GmkLEv~d~-~~~~~~~vAtV~~v~---------G~rl~Lry 190 (437)
T 3feo_A 121 HKYTNWKAFLVKRLTGAKTLPPDFSQKVSESMQYPFKPCMRVEVVDK-RHLCRTRVAVVESVI---------GGRLRLVY 190 (437)
T ss_dssp TTCSCHHHHHHHHHTTCCCCCTTHHHHHHHHTCCSCCTTEEEEEEET-TEEEEEEEEEEEEEE---------TTEEEEEE
T ss_pred cccccHHHHHHHHhhcCccCChhHhhccccccCCCCCCCCEEEEecC-CCCcceEEEEEEEEE---------CCEEEEEE
Confidence 124444332 22456889998887543 234566667776654 45666676
Q ss_pred ec
Q 025634 231 NH 232 (250)
Q Consensus 231 ~h 232 (250)
+.
T Consensus 191 ~g 192 (437)
T 3feo_A 191 EE 192 (437)
T ss_dssp SS
T ss_pred eC
Confidence 54
No 284
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=26.98 E-value=38 Score=21.95 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCCcCCCCCccchhHHHHHHhhhcc
Q 025634 40 CQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQQ 73 (250)
Q Consensus 40 rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR~ 73 (250)
..+||+.+|+|. ..|..|..+++.
T Consensus 19 q~~lA~~~gis~----------~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQ----------QSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTCCS
T ss_pred HHHHHHHhCCCH----------HHHHHHHcCCCC
Confidence 578999999997 889999998763
No 285
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=26.79 E-value=1.3e+02 Score=21.67 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHHHhCCCC
Q 025634 33 DLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 33 ~y~~~~~rq~LA~~f~lS~ 51 (250)
..|+.+...+||+.|++++
T Consensus 61 ~~~s~~~l~kIa~~L~v~~ 79 (88)
T 3t76_A 61 ENVSLTVLLAICEYLNCDF 79 (88)
T ss_dssp CCCCHHHHHHHHHHHTCCG
T ss_pred CCcCHHHHHHHHHHHCcCH
Confidence 3467777777777777775
No 286
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=26.61 E-value=42 Score=22.89 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 40 CQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 40 rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
..+||+.+|.|. ..|..|..+++
T Consensus 14 q~~lA~~lgvs~----------~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQ----------SAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCH----------HHHHHHHHHTC
T ss_pred HHHHHHHHCCCH----------HHHHHHHHCCC
Confidence 578999999997 77999999876
No 287
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=26.30 E-value=80 Score=30.22 Aligned_cols=88 Identities=19% Similarity=0.308 Sum_probs=52.0
Q ss_pred eeEEecccCC----CceeeeeeeheeeecccCcceEEEEecCCCC--Ccccceecc------------------------
Q 025634 119 MEFEARSSKD----GAWYDVDMFLAHRFLDCGEAEVRVRFVGFGA--DEDEWVNVK------------------------ 168 (250)
Q Consensus 119 ~efEArs~~D----~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~--eeDEw~~v~------------------------ 168 (250)
|-+|+....+ ...+-+.+. --+|. -|++||.||++ ..|=|+|+.
T Consensus 45 mklEv~d~~~~~~~~~~WvAtV~-----~~~G~-rL~Lry~G~~~d~~~DFW~~~~s~~ihPvGWc~~~g~~L~PP~~i~ 118 (456)
T 3f70_A 45 MKVEVLNSDAVLPSRVYWIASVI-----QTAGY-RVLLRYEGFENDASHDFWCNLGTVDVHPIGWCAINSKILVPPRTIH 118 (456)
T ss_dssp CEEEEECCSCCC--CCEEEEEEE-----EEETT-EEEEEETTCTTCCTTCEEEETTSTTEECTTHHHHTTCCBCCCTTTG
T ss_pred CEEEEecCCCCCCccceEEEEEe-----eecce-eEEEEecccCCCCcCCcceeCCCCceeecccHHhcCcEecCCcccc
Confidence 7777776655 233333332 22454 89999999984 589999831
Q ss_pred -----------c-cccccCCCCCc------ccccccccCceEEEEeeeCCcceeEeeEEeeee
Q 025634 169 -----------N-AVRERSVPLEP------SDCHKLKVGGHVLCFQERRDQGIHYDAHIAEIH 213 (250)
Q Consensus 169 -----------~-~~R~rS~p~e~------~eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~ 213 (250)
+ -.-.+++|.+- ..=+.+++|-.|-+.-..+ -..++=|.|.+|.
T Consensus 119 ~~~~~W~~~L~k~l~ga~~~P~~f~~~~~~~~~~~F~~GmkLE~vD~~~-~~~~~vAtV~~v~ 180 (456)
T 3f70_A 119 AKFTDWKGYLMKRLVGSRTLPVDFHIKMVESMKYPFRQGMRLEVVDKSQ-VSRTRMAVVDTVI 180 (456)
T ss_dssp GGCSCHHHHHHHHHTTCCBCCTTHHHHHHHHTSCSSCTTCEEEEECTTC-TTCEEEEEEEEEE
T ss_pred cCcccHHHHHHHHhccCccCCHHHhhccccccCCCCCCCCEEEEECCCC-CcceEEEEEEEEE
Confidence 0 01223444431 1124578888888765433 4556668887775
No 288
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=25.99 E-value=41 Score=22.16 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 40 CQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 40 rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
..+||+.+|+|. ..|..|..+++
T Consensus 26 ~~~lA~~~gis~----------~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSE----------NTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCH----------HHHHHHHTTSS
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 578999999997 88999998875
No 289
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=25.85 E-value=1e+02 Score=22.64 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHhh---CCCCCCHHHHHH----HHHHhCCCC
Q 025634 15 FTKTELEKMEKLLMES---KDDLLSKEFCQK----IAKSFSCSA 51 (250)
Q Consensus 15 FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~----LA~~f~lS~ 51 (250)
.|++|+.+|+++|... ++.+++..+... +...++..+
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~ 44 (176)
T 1nya_A 1 TTAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDA 44 (176)
T ss_dssp CCSHHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCS
T ss_pred CcHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCC
Confidence 3678999999999864 467888887777 566666553
No 290
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=25.61 E-value=1.1e+02 Score=25.20 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=27.2
Q ss_pred ccCCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhC
Q 025634 13 TGFTKTELEKMEKLLMES-KDDLLSKEFCQKIAKSFS 48 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~~-~~~y~~~~~rq~LA~~f~ 48 (250)
+.||.+||.+|-+.|... ++.+++..+...+-..++
T Consensus 86 ~~~s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~ 122 (256)
T 2jul_A 86 TKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFF 122 (256)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHC
T ss_pred hCCCHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHc
Confidence 568889999888888775 567888877777666653
No 291
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=25.47 E-value=1.1e+02 Score=24.00 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=26.4
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCC
Q 025634 14 GFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSC 49 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~l 49 (250)
.+|.+|+.+|.++|... ++.+++..+...+-..++.
T Consensus 50 ~l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~ 88 (197)
T 3pm8_A 50 HLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGY 88 (197)
T ss_dssp HCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHC-
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 47888899999888763 5567888777777666654
No 292
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=25.33 E-value=78 Score=25.59 Aligned_cols=37 Identities=5% Similarity=-0.124 Sum_probs=27.1
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCCCHHHHHH-HHHHhCCC
Q 025634 14 GFTKTELEKMEKLLMES---KDDLLSKEFCQK-IAKSFSCS 50 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~-LA~~f~lS 50 (250)
.+|++|+.+|.++|... ++.+++..+... |...++..
T Consensus 44 ~ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~ 84 (226)
T 2lvv_A 44 DKDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLD 84 (226)
T ss_dssp SCCHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCT
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCC
Confidence 57889999999888753 456788777776 66666654
No 293
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=25.17 E-value=96 Score=23.49 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=31.9
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhh
Q 025634 13 TGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
..||.++-.++-.++.+ +. -..+||+.|++|. ..|..|.+.
T Consensus 31 ~~~s~e~r~~iv~~~~~--G~-----s~~~iA~~lgis~----------~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQ--GV-----RPCDISRQLRVSH----------GCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHHT--TC-----CHHHHHHHHTCCH----------HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc--CC-----CHHHHHHHHCcCH----------HHHHHHHHH
Confidence 46888888888777754 22 3578999999997 889999875
No 294
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=25.14 E-value=43 Score=22.00 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 40 CQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 40 rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
..+||+.+++|. ..|..|..+++
T Consensus 21 ~~~lA~~~gis~----------~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSN----------VAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTSS
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 578999999997 88999998865
No 295
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=24.95 E-value=1.1e+02 Score=23.42 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=35.1
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHh-CCCCcCCCCCccchhHHHHHHhh
Q 025634 11 VFTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSF-SCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 11 ~Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f-~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
.+..||++|-..|.+++.++++ .=..||+.| |-|+ .||++-|.+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~------~W~~Ia~~l~gRt~----------~~~k~r~~~ 122 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN------RWAEIAKLLPGRTD----------NAVKNHWNS 122 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS------CHHHHGGGSTTCCH----------HHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHHHHCc------CHHHHHHHCCCCCH----------HHHHHHHHH
Confidence 3678999999999999999864 257888888 6665 899975554
No 296
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.78 E-value=46 Score=22.48 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.4
Q ss_pred ccCCHHHHHHHHHHHHhh
Q 025634 13 TGFTKTELEKMEKLLMES 30 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~~ 30 (250)
-.|+++|++.||..++..
T Consensus 15 egfspeelaaleselqal 32 (48)
T 1g6u_A 15 EGFSPEELAALESELQAL 32 (48)
T ss_dssp TTCSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 479999999999988763
No 297
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=24.57 E-value=67 Score=21.79 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=30.5
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 13 TGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
..||.++|.++=+... + ...+||+.+|.|. ..|..|=++++
T Consensus 9 ~~~~g~~lr~~R~~~g------l---tq~elA~~~gvs~----------~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLS------L---TQKEASEIFGGGV----------NAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTT------C---CHHHHHHHHCSCT----------THHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcC------C---CHHHHHHHhCcCH----------HHHHHHHcCCC
Confidence 3578888876654332 2 3578999999997 88999998875
No 298
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=24.47 E-value=48 Score=21.33 Aligned_cols=23 Identities=4% Similarity=0.163 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 40 CQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 40 rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
..+||+.+++|. ..|..|..+++
T Consensus 17 q~~lA~~~gis~----------~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQ----------QSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTSC
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 578999999997 88999998875
No 299
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=24.42 E-value=63 Score=24.25 Aligned_cols=22 Identities=5% Similarity=0.170 Sum_probs=15.4
Q ss_pred HHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 41 QKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 41 q~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
++||+.+|.|. ..|..|-++++
T Consensus 88 ~~la~~~g~s~----------~~i~~~E~g~~ 109 (133)
T 3o9x_A 88 KEASEIFGGGV----------NAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHCSCT----------THHHHHHHTSS
T ss_pred HHHHHHHCCCH----------HHHHHHHCCCC
Confidence 34566666665 77999998875
No 300
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=24.20 E-value=93 Score=24.25 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=10.4
Q ss_pred HHHHHhhhcccCC
Q 025634 64 VQSWFQSRQQDRP 76 (250)
Q Consensus 64 Vk~WFQNRR~k~~ 76 (250)
||.||.||-+++-
T Consensus 19 iwlwfrnrpaaqv 31 (117)
T 1w8x_P 19 IWLWFRNRPAAQV 31 (117)
T ss_dssp HHHHHHHTTCSCS
T ss_pred HHHHHccChHHHH
Confidence 7899999976653
No 301
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=23.99 E-value=61 Score=21.79 Aligned_cols=21 Identities=5% Similarity=-0.160 Sum_probs=17.9
Q ss_pred CCCCCCHHHHHHHHHHhCCCC
Q 025634 31 KDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 31 ~~~y~~~~~rq~LA~~f~lS~ 51 (250)
+...|+.....+||+.|+++.
T Consensus 38 g~~~p~~~~l~~ia~~l~v~~ 58 (77)
T 2k9q_A 38 SETAPVVVKYIAFLRSKGVDL 58 (77)
T ss_dssp CCSCCHHHHHHHHHHHTTCCH
T ss_pred CCCCCCHHHHHHHHHHhCcCH
Confidence 345688999999999999996
No 302
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=23.58 E-value=70 Score=23.75 Aligned_cols=35 Identities=9% Similarity=0.143 Sum_probs=27.1
Q ss_pred cCCHHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHhC
Q 025634 14 GFTKTELEKMEKLLMES----KDDLLSKEFCQKIAKSFS 48 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~----~~~y~~~~~rq~LA~~f~ 48 (250)
.+|+.++.+|+.+|... ++.+++..+...+...++
T Consensus 1 gls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~ 39 (185)
T 2sas_A 1 GLNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYK 39 (185)
T ss_dssp CCCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHH
Confidence 36888999999998765 667888888777766655
No 303
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=23.20 E-value=37 Score=25.93 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=33.7
Q ss_pred CCccCCHHHH-HHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 11 VFTGFTKTEL-EKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 11 ~Rt~FT~~Ql-~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
.+..-|.++| ....++|.+++ ++.....+||+..|.|. .-+-..|.||-
T Consensus 27 ~~~~~~r~~Il~aa~~l~~~~G---~~~~tv~~Ia~~agvs~----------~t~Y~~F~sK~ 76 (218)
T 3dcf_A 27 RTGNDRRTQIIKVATELFREKG---YYATSLDDIADRIGFTK----------PAIYYYFKSKE 76 (218)
T ss_dssp ---CHHHHHHHHHHHHHHHHTC---TTTCCHHHHHHHHTCCH----------HHHHHHCSSHH
T ss_pred CCccchHHHHHHHHHHHHHHcC---cccCcHHHHHHHhCCCH----------HHHHHHcCCHH
Confidence 3445566665 46778888854 45556789999999996 55778888873
No 304
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=23.10 E-value=1.1e+02 Score=24.47 Aligned_cols=38 Identities=8% Similarity=-0.023 Sum_probs=28.7
Q ss_pred ccCCHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHH-hCCC
Q 025634 13 TGFTKTELEKMEKLLME---SKDDLLSKEFCQKIAKS-FSCS 50 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~-f~lS 50 (250)
..||++|+.+|.++|.. .++.+++..+...+-.. ++..
T Consensus 40 ~~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~ 81 (219)
T 3cs1_A 40 REKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLD 81 (219)
T ss_dssp CSSSHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGG
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCC
Confidence 56899999999999976 35678888777765544 6654
No 305
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=23.01 E-value=2.4e+02 Score=21.59 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=34.8
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHh-CCCCcCCCCCccchhHHHHHHhhh
Q 025634 12 FTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSF-SCSAGRAGKPVVKWTEVQSWFQSR 71 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f-~lS~~RaGK~~Vq~~QVk~WFQNR 71 (250)
+..||++|-..|-.++.++++. =..||..| |-|+ .||++-|.+-
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~~------W~~Ia~~l~gRt~----------~~~k~rw~~~ 98 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGSK------WSVIAKLIPGRTD----------NAIKNRWNSS 98 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCSC------HHHHTTTSTTCCH----------HHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC------HHHHHHHcCCCCH----------HHHHHHHHHH
Confidence 5689999999999999998653 57788888 6665 8999655554
No 306
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=22.81 E-value=51 Score=21.74 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 40 CQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 40 rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
..+||+.+|+|. ..|..|..+++
T Consensus 26 q~~lA~~~gis~----------~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHR----------TYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCH----------HHHHHHHTTCS
T ss_pred HHHHHHHHCCCH----------HHHHHHHCCCC
Confidence 578999999997 88999998764
No 307
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=22.80 E-value=57 Score=29.78 Aligned_cols=44 Identities=20% Similarity=0.355 Sum_probs=36.4
Q ss_pred ceeEEecccCCCceeeeeeeheeeecccCcceEEEEecCCCCCccccee
Q 025634 118 EMEFEARSSKDGAWYDVDMFLAHRFLDCGEAEVRVRFVGFGADEDEWVN 166 (250)
Q Consensus 118 ~~efEArs~~D~AWYdV~~fl~hR~~~~ge~ev~Vrf~gFg~eeDEw~~ 166 (250)
-|-+||-...+-..+-|++.. .++ |+ .|+|+|.|..++.|-|++
T Consensus 147 GMKLEavDp~~p~~icvATV~--~V~--g~-~l~v~~Dg~~~~~d~w~~ 190 (324)
T 3ut1_A 147 GMKLEAVDKKNPSFICVATVT--DMV--DN-RFLVHFDNWDESYDYWCE 190 (324)
T ss_dssp TCEEEEEETTEEEEEEEEEEE--EEE--TT-EEEEEETTSCGGGCEEEC
T ss_pred CCEEEEecCCCCCcEEEEEEE--EEE--CC-EEEEEECCCCCcCCEEEE
Confidence 388999999998888888864 332 44 699999999999999987
No 308
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=22.53 E-value=1.2e+02 Score=21.09 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.3
Q ss_pred CCCCCHHHHHHHHHHhCCCC
Q 025634 32 DDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 32 ~~y~~~~~rq~LA~~f~lS~ 51 (250)
...|+.+...+||+.||+++
T Consensus 45 ~~~~~~~~~~~i~~~l~v~~ 64 (94)
T 2ict_A 45 KAALTPEMAIKLSVVIGSSP 64 (94)
T ss_dssp SSCCCHHHHHHHHHHTCSCH
T ss_pred CCCCCHHHHHHHHHHHCcCH
Confidence 45788888888999988885
No 309
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=22.45 E-value=1.7e+02 Score=22.56 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=28.5
Q ss_pred ccCCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhCC
Q 025634 13 TGFTKTELEKMEKLLMES-KDDLLSKEFCQKIAKSFSC 49 (250)
Q Consensus 13 t~FT~~Ql~eLEk~f~~~-~~~y~~~~~rq~LA~~f~l 49 (250)
+.||..||.+|=+.|... ++.+++..+...+...++.
T Consensus 28 ~~~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~ 65 (207)
T 2d8n_A 28 TKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFP 65 (207)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCT
T ss_pred cCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhcc
Confidence 457888888888888776 5788888888887777754
No 310
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=22.18 E-value=87 Score=21.52 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=15.4
Q ss_pred CCCCCHHHHHHHHHHhCCCC
Q 025634 32 DDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 32 ~~y~~~~~rq~LA~~f~lS~ 51 (250)
...|+.....+||+.|+++.
T Consensus 54 ~~~~~~~~l~~ia~~l~v~~ 73 (92)
T 1lmb_3 54 INALNAYNAALLAKILKVSV 73 (92)
T ss_dssp SSCCCHHHHHHHHHHHTSCG
T ss_pred CCCCCHHHHHHHHHHHCCCH
Confidence 45678888888888888875
No 311
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=22.07 E-value=1.3e+02 Score=23.11 Aligned_cols=40 Identities=23% Similarity=0.075 Sum_probs=27.9
Q ss_pred CccCCHHHHHHHHH---------HHH--hhCCC-CCCHHHHHHHHHHhCCCC
Q 025634 12 FTGFTKTELEKMEK---------LLM--ESKDD-LLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk---------~f~--~~~~~-y~~~~~rq~LA~~f~lS~ 51 (250)
+..+|..||++.=. .+. +++.. .|+.+..++||+-||.|.
T Consensus 22 ~~~lT~~elA~~~~~~G~~iS~s~is~iE~G~r~~Ps~~~l~~iA~~f~V~~ 73 (123)
T 3qwg_A 22 RGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKA 73 (123)
T ss_dssp TCSCCHHHHHHHHHHTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHTTSCT
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCH
Confidence 34678888776322 111 22344 799999999999999996
No 312
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=21.95 E-value=63 Score=25.20 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=22.1
Q ss_pred CccCCHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHhCC
Q 025634 12 FTGFTKTELEKMEKLLME---SKDDLLSKEFCQKIAKSFSC 49 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~---~~~~y~~~~~rq~LA~~f~l 49 (250)
-+.||++|+.+|.++|.. .++.+++..+...+...++.
T Consensus 27 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~ 67 (208)
T 2hpk_A 27 VEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQ 67 (208)
T ss_dssp ---------CHHHHHHHHHCTTCSSEECHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Confidence 478999999999999986 35678888877777666643
No 313
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=21.53 E-value=57 Score=21.25 Aligned_cols=23 Identities=9% Similarity=-0.067 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 40 CQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 40 rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
..+||+.+|+|. ..|..|..+++
T Consensus 29 ~~~lA~~~gis~----------~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDR----------SYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCH----------HHHHHHHTTCS
T ss_pred HHHHHHHHCcCH----------HHHHHHHCCCC
Confidence 578999999997 88999998864
No 314
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=21.44 E-value=1.6e+02 Score=18.97 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=31.9
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHh-CCCCcCCCCCccchhHHHHHHhh
Q 025634 12 FTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSF-SCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f-~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
+..||++|-..|.++...++.. -=..||..| +-|+ +|++.=++|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~-----~W~~Ia~~~~~Rt~----------~qcr~Rw~~ 47 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPK-----RWSVIAKHLKGRIG----------KQCRERWHN 47 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTT-----CHHHHHTTSTTCCH----------HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcC-----hHHHHHHHcCCCCH----------HHHHHHHHH
Confidence 4679999999999999987531 257788887 3443 888854444
No 315
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=21.29 E-value=1.2e+02 Score=20.95 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHhCCCC
Q 025634 32 DDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 32 ~~y~~~~~rq~LA~~f~lS~ 51 (250)
...|+.+...+||+.|+++.
T Consensus 50 ~~~p~~~~l~~la~~l~v~~ 69 (91)
T 1x57_A 50 RAIPNNQVLGKIERAIGLKL 69 (91)
T ss_dssp CSCCCHHHHHHHHHHHTBCC
T ss_pred CCCCCHHHHHHHHHHHCcCH
Confidence 45689999999999999986
No 316
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=21.27 E-value=58 Score=21.58 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 40 CQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 40 rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
..+||+.+|+|. ..|..|..+++
T Consensus 24 q~~lA~~~gis~----------~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNK----------TTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCH----------HHHHHHHTTSS
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 568999999997 88999998874
No 317
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=21.07 E-value=59 Score=22.11 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHhhC----CCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHhhhc
Q 025634 15 FTKTELEKMEKLLMESK----DDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQSRQ 72 (250)
Q Consensus 15 FT~~Ql~eLEk~f~~~~----~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQNRR 72 (250)
+|++|+..++++-...+ ..-+ ...+||+.+|+|. ..|..|..+++
T Consensus 2 lt~~~~~~~~~l~~~l~~~r~~~gl---tq~~lA~~~gvs~----------~~is~~e~g~~ 50 (80)
T 3kz3_A 2 LTQEQLEDARRLKAIWEKKKNELGL---SYESVADKMGMGQ----------SAVAALFNGIN 50 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHTTSCH----------HHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCC---CHHHHHHHhCcCH----------HHHHHHHcCCC
Confidence 57777766655433211 0112 2468999999997 88999998875
No 318
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=20.96 E-value=1.4e+02 Score=19.80 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=22.4
Q ss_pred cCCHHHHHHH--HHHHHhhCCCCCCHHHHHHH
Q 025634 14 GFTKTELEKM--EKLLMESKDDLLSKEFCQKI 43 (250)
Q Consensus 14 ~FT~~Ql~eL--Ek~f~~~~~~y~~~~~rq~L 43 (250)
.+|++|++.| |+...+. |++++.++...|
T Consensus 1 ~mtpe~~~~~~~~~ei~~R-NrpltDEeLD~m 31 (39)
T 3lqv_P 1 SMTPEQLQAWRWEREIDER-NRPLSDEELDAM 31 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHT
T ss_pred CCCHHHHHHHHhhccchhh-cCCCCHHHHHHh
Confidence 3688888765 8877776 689999888766
No 319
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=20.92 E-value=1.7e+02 Score=22.03 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=36.4
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHh-CCCCcCCCCCccchhHHHHHHhhh
Q 025634 12 FTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSF-SCSAGRAGKPVVKWTEVQSWFQSR 71 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f-~lS~~RaGK~~Vq~~QVk~WFQNR 71 (250)
...+|.+|-..||+++...+.. +...=.+||+.+ |-|. +||+.=|++=
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~--~~~rW~~IA~~vpGRT~----------~q~k~ry~~l 56 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKD--TPDRWANVARAVEGRTP----------EEVKKHYEIL 56 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHSTTCCH----------HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHcCCCCH----------HHHHHHHHHH
Confidence 5679999999999999985432 235678999999 4665 8998655554
No 320
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=20.90 E-value=1.5e+02 Score=22.05 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=33.8
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHh-CCCCcCCCCCccchhHHHHHHhh
Q 025634 12 FTGFTKTELEKMEKLLMESKDDLLSKEFCQKIAKSF-SCSAGRAGKPVVKWTEVQSWFQS 70 (250)
Q Consensus 12 Rt~FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f-~lS~~RaGK~~Vq~~QVk~WFQN 70 (250)
+..||++|-..|..++.++++ -=..||..| |-|+ .||++-|.+
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~------~W~~Ia~~l~gRt~----------~~~k~rw~~ 96 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP------KWNKISKFLKNRSD----------NNIRNRWMM 96 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS------CHHHHHHHHSSSCH----------HHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc------CHHHHHHHCCCCCH----------HHHHHHHHH
Confidence 578999999999999999764 256788888 6665 899865543
No 321
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=20.89 E-value=92 Score=21.28 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHhCCCC
Q 025634 32 DDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 32 ~~y~~~~~rq~LA~~f~lS~ 51 (250)
...|+.+...+||+.|+++.
T Consensus 48 ~~~p~~~~l~~ia~~l~v~~ 67 (78)
T 3qq6_A 48 QTNPSIQFLEKVSAVLDVSV 67 (78)
T ss_dssp CCCCBHHHHHHHHHHHTCCH
T ss_pred CCCCCHHHHHHHHHHHCcCH
Confidence 46899999999999999995
No 322
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=20.66 E-value=1.1e+02 Score=21.72 Aligned_cols=47 Identities=11% Similarity=0.083 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCcCCCCCccchhHHHHHHh
Q 025634 15 FTKTELEKMEKLLMESKDDLLSKEFCQKIAKSFSCSAGRAGKPVVKWTEVQSWFQ 69 (250)
Q Consensus 15 FT~~Ql~eLEk~f~~~~~~y~~~~~rq~LA~~f~lS~~RaGK~~Vq~~QVk~WFQ 69 (250)
+|++|+.++=+.|-..++.+++..+...+...++... ...+++..|.
T Consensus 2 ls~~el~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~--------~~~~~~~~~~ 48 (145)
T 2bl0_B 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNP--------TNAELNTIKG 48 (145)
T ss_dssp CCHHHHHHHHHHHCTTCSSCEEGGGHHHHHHHTTCCC--------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCcCccCHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 6788844444444445677888888888777777543 2355665554
No 323
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=20.14 E-value=1.2e+02 Score=23.50 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=29.7
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHhCCCC
Q 025634 14 GFTKTELEKMEKLLMES---KDDLLSKEFCQKIAKSFSCSA 51 (250)
Q Consensus 14 ~FT~~Ql~eLEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 51 (250)
.+|++|+.+|.++|... ++.+++..+...+...++...
T Consensus 45 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~ 85 (191)
T 3k21_A 45 QSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKL 85 (191)
T ss_dssp HCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCC
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCCCc
Confidence 47888999999999863 567888888888877777653
Done!