Citrus Sinensis ID: 025636

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MLNVVICWRWKSFASELCFHYRSEVDTGLWDLHLLNFVILVIEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP
Secondary Structure (PSIPRED)
cccEEEEEEEHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccccccccccccccccHHHHHHcccccEEEEEccccHHcccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHcccccccccccccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEcHHHHHHHHHHcccccHHHHHHHHccccccEEEccccccccccccccccccccHHHHHHccccccEEEEccHHHHHHccccccccHHcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccccccccccccccccccEEEEEcccccccccccccccccccccccccccHHHHHHHcccccccccccccccEEEEEEEccc
Coil and Loop (DISEMBL)
MLNVVICWRWKSFASELCFHYRsevdtglwdlhLLNFVILVIEesetdseesdvsgsdgddtsWISWFCNlrgneffcevddeyiqddfnlcglssqvpyydYALDLILDVesshgdmfTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKyknydfgrcprvyccgqpclpvgqsdiprsstvkiycpkcediyyprskyqgnidgayfgttfphlflmtyghlkpqkatqsyvprvfgfklhkp
Flexible Loop (DISEMBL)
MLNVVICWRWKSFASELCFHYRSEVDTGLWDLHLLNFVILVIEesetdseesdvsgsdgddTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLpvgqsdiprsstVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP
Low Complexity Region (SEG)
MLNVVICWRWKSFASELCFHYRSEVDTGLWDLHLLNFVILVIeesetdseesdvsgsdgddtsWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP
Disordered region (IsUnstruct)
**NVVICWRWKSFASELCFHYRSEVDTGLWDLHLLNFVILVIE******************TSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFK****
Disordered Region (DISOPRED)
*LNVVICWRWKSFASELCFH***************NFVI*************************ISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSH*********ELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK*
Disordered Region (DISEMBL)
MLNVVICWRWKSFASELCFHYRSEVDTGLWDLHLLNFVILVIEES**************DDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP
Disordered Region (DISPRO)
MLNVVICWRWKSFASELCFHYRSEVDTGLWDLHLLNFVILVIEES**************DDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNVVICWRWKSFASELCFHYRSEVDTGLWDLHLLNFVILVIEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	250	2.2.26 [Sep-21-2011]
P40228	287	Casein kinase II subunit	yes	no	0.832	0.724	0.923	1e-115
P40229	282	Casein kinase II subunit	no	no	0.84	0.744	0.895	1e-115
O80507	283	Putative casein kinase II	no	no	0.82	0.724	0.892	1e-111
O81275	276	Casein kinase II subunit	no	no	0.828	0.75	0.874	1e-108
Q91398	215	Casein kinase II subunit	yes	no	0.768	0.893	0.583	2e-66
P28021	215	Casein kinase II subunit	N/A	no	0.768	0.893	0.583	2e-66
P67874	215	Casein kinase II subunit	yes	no	0.768	0.893	0.583	2e-66
P67873	215	Casein kinase II subunit	yes	no	0.768	0.893	0.583	2e-66
P67872	215	Casein kinase II subunit	yes	no	0.768	0.893	0.583	2e-66
P67871	215	Casein kinase II subunit	yes	no	0.768	0.893	0.583	2e-66

>sp|P40228|CSK2B_ARATH Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1

 Score =  414 bits (1065), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 192/208 (92%), Positives = 203/208 (97%)

Query: 43  EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD 102
           +ES+TDSEESDVSGSDG+DTSWISWFCNLRGNEFFCEVDD+YIQDDFNLCGLSS VPYY+
Sbjct: 80  DESDTDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSLVPYYE 139

Query: 103 YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFG 162
           YALDLILDVESS G+MFTEEQNEL+ESAAEMLYGLIH RYILTSKG+AAML+KYKNYDFG
Sbjct: 140 YALDLILDVESSQGEMFTEEQNELIESAAEMLYGLIHARYILTSKGLAAMLDKYKNYDFG 199

Query: 163 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 222
           RCPRVYCCGQPCLPVGQSD+PRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF
Sbjct: 200 RCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 259

Query: 223 LMTYGHLKPQKATQSYVPRVFGFKLHKP 250
           LMTYGHLKP KATQ+YV RVFGFKLHKP
Sbjct: 260 LMTYGHLKPAKATQNYVQRVFGFKLHKP 287

Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Stimulates the binding of CCA1 to promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|P40229|CSK2C_ARATH Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1

 Score =  414 bits (1064), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 188/210 (89%), Positives = 204/210 (97%)

Query: 41  VIEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPY 100
            ++ S+TDSEES+VSGSDG+DTSWISWFCNLRGNEFFCEVDD+YIQDDFNLCGLS QVPY
Sbjct: 73  AVDISDTDSEESEVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSHQVPY 132

Query: 101 YDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYD 160
           YDYALDLILDVESSHG+MFTEEQNEL+ESAAEMLYG+IH R+ILTSKG+A+ML+KYKNYD
Sbjct: 133 YDYALDLILDVESSHGEMFTEEQNELIESAAEMLYGMIHARFILTSKGLASMLDKYKNYD 192

Query: 161 FGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPH 220
           FGRCPRVYCCGQPCLPVGQSDIPR+STVKIYCPKCED+YYPRSKYQGNIDGAYFGTTFPH
Sbjct: 193 FGRCPRVYCCGQPCLPVGQSDIPRASTVKIYCPKCEDVYYPRSKYQGNIDGAYFGTTFPH 252

Query: 221 LFLMTYGHLKPQKATQSYVPRVFGFKLHKP 250
           LFLMTYGHLKPQKA+QSY  RVFGFKLHKP
Sbjct: 253 LFLMTYGHLKPQKASQSYTQRVFGFKLHKP 282

Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Arabidopsis thaliana (taxid: 3702)

>sp|O80507|CSK2E_ARATH Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1

 Score =  400 bits (1027), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 183/205 (89%), Positives = 199/205 (97%)

Query: 44  ESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDY 103
           ES+TDSE SDVSGS+GDDTSWISWFCNLRGNEFFCEVD++YIQDDFNLCGLS QVPYYDY
Sbjct: 76  ESDTDSEGSDVSGSEGDDTSWISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSGQVPYYDY 135

Query: 104 ALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGR 163
           ALDLILDVESS+GDMFTEEQ+E+VESAAEMLYGLIHVRYILT+KGMAAM+EKYKNYDFGR
Sbjct: 136 ALDLILDVESSNGDMFTEEQHEMVESAAEMLYGLIHVRYILTTKGMAAMMEKYKNYDFGR 195

Query: 164 CPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFL 223
           CPRV+CCGQ CLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFL
Sbjct: 196 CPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFL 255

Query: 224 MTYGHLKPQKATQSYVPRVFGFKLH 248
           M YG++KPQK  Q+YVP++FGFK+H
Sbjct: 256 MAYGNMKPQKPAQNYVPKIFGFKVH 280

Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Arabidopsis thaliana (taxid: 3702)

>sp|O81275|CSK2D_ARATH Casein kinase II subunit beta-3 OS=Arabidopsis thaliana GN=CKB3 PE=1 SV=1

 Score =  392 bits (1007), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/207 (87%), Positives = 199/207 (96%)

Query: 44  ESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDY 103
           ESETDSE SDVSGS+GDDTSWISWFCNLRGN+FFCEVD++YIQDDFNLCGLS QVPYYDY
Sbjct: 70  ESETDSEGSDVSGSEGDDTSWISWFCNLRGNDFFCEVDEDYIQDDFNLCGLSGQVPYYDY 129

Query: 104 ALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGR 163
           ALDLILDV++S+ +MFT+EQ+E+VESAAEMLYGLIHVRYILT+KGMAAM EKYKN DFGR
Sbjct: 130 ALDLILDVDASNSEMFTDEQHEMVESAAEMLYGLIHVRYILTTKGMAAMTEKYKNCDFGR 189

Query: 164 CPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFL 223
           CPRV+CCGQ CLPVGQSDIPRSSTVKIYCPKCEDI YPRSK+QGNIDGAYFGTTFPHLFL
Sbjct: 190 CPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDISYPRSKFQGNIDGAYFGTTFPHLFL 249

Query: 224 MTYGHLKPQKATQSYVPRVFGFKLHKP 250
           MTYG+LKPQK TQSYVP++FGFK+HKP
Sbjct: 250 MTYGNLKPQKPTQSYVPKIFGFKVHKP 276

Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Stimulates the binding of CCA1 to promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q91398|CSK2B_DANRE Casein kinase II subunit beta OS=Danio rerio GN=csnk2b PE=2 SV=1

 Score =  252 bits (644), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 142/192 (73%)

Query: 57  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 116
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 117 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 176
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 177 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 236
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 237 SYVPRVFGFKLH 248
            +VPR++GFK+H
Sbjct: 182 QFVPRLYGFKIH 193

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Danio rerio (taxid: 7955)

>sp|P28021|CSK2B_XENLA Casein kinase II subunit beta OS=Xenopus laevis GN=csnk2b PE=1 SV=1

 Score =  252 bits (643), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 142/192 (73%)

Query: 57  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 116
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 117 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 176
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 177 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 236
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 237 SYVPRVFGFKLH 248
            +VPR++GFK+H
Sbjct: 182 QFVPRLYGFKIH 193

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Xenopus laevis (taxid: 8355)

>sp|P67874|CSK2B_RAT Casein kinase II subunit beta OS=Rattus norvegicus GN=Csnk2b PE=1 SV=1

 Score =  252 bits (643), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 142/192 (73%)

Query: 57  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 116
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 117 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 176
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 177 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 236
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 237 SYVPRVFGFKLH 248
            +VPR++GFK+H
Sbjct: 182 QFVPRLYGFKIH 193

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Rattus norvegicus (taxid: 10116)

>sp|P67873|CSK2B_RABIT Casein kinase II subunit beta OS=Oryctolagus cuniculus GN=CSNK2B PE=2 SV=1

 Score =  252 bits (643), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 142/192 (73%)

Query: 57  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 116
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 117 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 176
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 177 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 236
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 237 SYVPRVFGFKLH 248
            +VPR++GFK+H
Sbjct: 182 QFVPRLYGFKIH 193

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Oryctolagus cuniculus (taxid: 9986)

>sp|P67872|CSK2B_PIG Casein kinase II subunit beta OS=Sus scrofa GN=CSNK2B PE=2 SV=1

 Score =  252 bits (643), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 142/192 (73%)

Query: 57  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 116
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 117 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 176
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 177 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 236
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 237 SYVPRVFGFKLH 248
            +VPR++GFK+H
Sbjct: 182 QFVPRLYGFKIH 193

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Sus scrofa (taxid: 9823)

>sp|P67871|CSK2B_MOUSE Casein kinase II subunit beta OS=Mus musculus GN=Csnk2b PE=1 SV=1

 Score =  252 bits (643), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 142/192 (73%)

Query: 57  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 116
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 117 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 176
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 177 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 236
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 237 SYVPRVFGFKLH 248
            +VPR++GFK+H
Sbjct: 182 QFVPRLYGFKIH 193

Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Participates in Wnt signaling.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
224137102	300	predicted protein [Populus trichocarpa]	0.832	0.693	0.990	1e-121
224063639	301	predicted protein [Populus trichocarpa]	0.832	0.691	0.990	1e-120
225453309	288	PREDICTED: putative casein kinase II sub	0.832	0.722	0.980	1e-120
449442327	295	PREDICTED: putative casein kinase II sub	0.828	0.701	0.980	1e-119
21261784	280	protein kinase Ck2 regulatory subunit 2	0.828	0.739	0.980	1e-118
297790971	283	hypothetical protein ARALYDRAFT_494272 [	0.832	0.734	0.927	1e-114
15238013	287	casein kinase 2 subunit beta [Arabidopsi	0.832	0.724	0.923	1e-113
224126601	280	predicted protein [Populus trichocarpa]	0.828	0.739	0.927	1e-113
15236597	282	casein kinase 2 subunit beta' [Arabidops	0.84	0.744	0.895	1e-113
195628750	273	casein kinase II subunit beta-4 [Zea may	0.828	0.758	0.932	1e-113

>gi|224137102|ref|XP_002327022.1| predicted protein [Populus trichocarpa] gi|222835337|gb|EEE73772.1| predicted protein [Populus trichocarpa]

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/208 (99%), Positives = 207/208 (99%)

Query: 43  EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD 102
           EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD
Sbjct: 93  EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD 152

Query: 103 YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFG 162
           YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGM+AMLEKYKNYDFG
Sbjct: 153 YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMSAMLEKYKNYDFG 212

Query: 163 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 222
           RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF
Sbjct: 213 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 272

Query: 223 LMTYGHLKPQKATQSYVPRVFGFKLHKP 250
           LMTYGHLKPQKA QSYVPRVFGFKLHKP
Sbjct: 273 LMTYGHLKPQKAIQSYVPRVFGFKLHKP 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063639|ref|XP_002301241.1| predicted protein [Populus trichocarpa] gi|222842967|gb|EEE80514.1| predicted protein [Populus trichocarpa]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/208 (99%), Positives = 207/208 (99%)

Query: 43  EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD 102
           EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD
Sbjct: 94  EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD 153

Query: 103 YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFG 162
           YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGM+AMLEKYKNYDFG
Sbjct: 154 YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMSAMLEKYKNYDFG 213

Query: 163 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 222
           RCPRVYCCGQPC PVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF
Sbjct: 214 RCPRVYCCGQPCFPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 273

Query: 223 LMTYGHLKPQKATQSYVPRVFGFKLHKP 250
           LMTYGHLKPQKATQSYVPRVFGFKLHKP
Sbjct: 274 LMTYGHLKPQKATQSYVPRVFGFKLHKP 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453309|ref|XP_002269020.1| PREDICTED: putative casein kinase II subunit beta-4 isoform 1 [Vitis vinifera] gi|297734650|emb|CBI16701.3| unnamed protein product [Vitis vinifera]

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/208 (98%), Positives = 207/208 (99%)

Query: 43  EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD 102
           EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD
Sbjct: 81  EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD 140

Query: 103 YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFG 162
           YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGM+AMLEKYK+YDFG
Sbjct: 141 YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMSAMLEKYKSYDFG 200

Query: 163 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 222
           RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF
Sbjct: 201 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 260

Query: 223 LMTYGHLKPQKATQSYVPRVFGFKLHKP 250
           LMTYGHLKPQKA QSYVPRVFGFK+HKP
Sbjct: 261 LMTYGHLKPQKAAQSYVPRVFGFKIHKP 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442327|ref|XP_004138933.1| PREDICTED: putative casein kinase II subunit beta-4-like [Cucumis sativus] gi|449505605|ref|XP_004162519.1| PREDICTED: putative casein kinase II subunit beta-4-like [Cucumis sativus]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/207 (98%), Positives = 205/207 (99%)

Query: 43  EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD 102
           EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD
Sbjct: 86  EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD 145

Query: 103 YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFG 162
           YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILT KG++AMLEKYKNYDFG
Sbjct: 146 YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTGKGISAMLEKYKNYDFG 205

Query: 163 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 222
           RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF
Sbjct: 206 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 265

Query: 223 LMTYGHLKPQKATQSYVPRVFGFKLHK 249
           LMTYGHLKPQKATQ YVPRVFGFKLHK
Sbjct: 266 LMTYGHLKPQKATQGYVPRVFGFKLHK 292

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21261784|emb|CAD32500.1| protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/207 (98%), Positives = 207/207 (100%)

Query: 43  EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD 102
           +ESETDSEESDVSGSDG+DTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD
Sbjct: 73  DESETDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD 132

Query: 103 YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFG 162
           YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFG
Sbjct: 133 YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFG 192

Query: 163 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 222
           RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF
Sbjct: 193 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 252

Query: 223 LMTYGHLKPQKATQSYVPRVFGFKLHK 249
           LMTYGHLKPQK+TQ+YVPRVFGFKLHK
Sbjct: 253 LMTYGHLKPQKSTQNYVPRVFGFKLHK 279

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790971|ref|XP_002863370.1| hypothetical protein ARALYDRAFT_494272 [Arabidopsis lyrata subsp. lyrata] gi|297309205|gb|EFH39629.1| hypothetical protein ARALYDRAFT_494272 [Arabidopsis lyrata subsp. lyrata]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/208 (92%), Positives = 204/208 (98%)

Query: 43  EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD 102
           +ES+TDSEESDVSGSDG+DTSWISWFCNLRGNEFFCEVDD+YIQDDFNLCGLSS VPYY+
Sbjct: 76  DESDTDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSLVPYYE 135

Query: 103 YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFG 162
           YALDLILDVESSHG+MFTEEQNEL+ESAAEMLYGLIH RYILTSKG+AAML+KYKNYDFG
Sbjct: 136 YALDLILDVESSHGEMFTEEQNELIESAAEMLYGLIHARYILTSKGLAAMLDKYKNYDFG 195

Query: 163 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 222
           RCPRVYCCGQPCLPVGQSD+PRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF
Sbjct: 196 RCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 255

Query: 223 LMTYGHLKPQKATQSYVPRVFGFKLHKP 250
           LMTYGHLKP KATQ+YV RVFGFKLHKP
Sbjct: 256 LMTYGHLKPSKATQNYVQRVFGFKLHKP 283

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238013|ref|NP_199519.1| casein kinase 2 subunit beta [Arabidopsis thaliana] gi|729880|sp|P40228.1|CSK2B_ARATH RecName: Full=Casein kinase II subunit beta; Short=CK II beta gi|468264|gb|AAA53233.1| casein kinase II beta subunit CKB1 [Arabidopsis thaliana] gi|8978075|dbj|BAA98103.1| casein kinase II beta chain [Arabidopsis thaliana] gi|332008083|gb|AED95466.1| casein kinase 2 subunit beta [Arabidopsis thaliana]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/208 (92%), Positives = 203/208 (97%)

Query: 43  EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD 102
           +ES+TDSEESDVSGSDG+DTSWISWFCNLRGNEFFCEVDD+YIQDDFNLCGLSS VPYY+
Sbjct: 80  DESDTDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSLVPYYE 139

Query: 103 YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFG 162
           YALDLILDVESS G+MFTEEQNEL+ESAAEMLYGLIH RYILTSKG+AAML+KYKNYDFG
Sbjct: 140 YALDLILDVESSQGEMFTEEQNELIESAAEMLYGLIHARYILTSKGLAAMLDKYKNYDFG 199

Query: 163 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 222
           RCPRVYCCGQPCLPVGQSD+PRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF
Sbjct: 200 RCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 259

Query: 223 LMTYGHLKPQKATQSYVPRVFGFKLHKP 250
           LMTYGHLKP KATQ+YV RVFGFKLHKP
Sbjct: 260 LMTYGHLKPAKATQNYVQRVFGFKLHKP 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126601|ref|XP_002329595.1| predicted protein [Populus trichocarpa] gi|222870304|gb|EEF07435.1| predicted protein [Populus trichocarpa]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/207 (92%), Positives = 202/207 (97%)

Query: 44  ESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDY 103
           ESETDSEESDVSGS+GD+T+WISWFCNLRGNEFFCEVDD+YIQDDFNLCGLS+QVPYYDY
Sbjct: 74  ESETDSEESDVSGSEGDETTWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSTQVPYYDY 133

Query: 104 ALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGR 163
           ALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIH RYILTSKGMAAML+KYKNYDFGR
Sbjct: 134 ALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGR 193

Query: 164 CPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFL 223
           CPRV+CCGQPCLPVGQSDIPRSS +KI CPKC+DIYYPRSKYQGNIDGAYFGTTFPHLFL
Sbjct: 194 CPRVHCCGQPCLPVGQSDIPRSSNIKICCPKCDDIYYPRSKYQGNIDGAYFGTTFPHLFL 253

Query: 224 MTYGHLKPQKATQSYVPRVFGFKLHKP 250
           MTYGHLKPQK  QSYVPRVFGFK+HKP
Sbjct: 254 MTYGHLKPQKVVQSYVPRVFGFKIHKP 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236597|ref|NP_193499.1| casein kinase 2 subunit beta' [Arabidopsis thaliana] gi|729882|sp|P40229.1|CSK2C_ARATH RecName: Full=Casein kinase II subunit beta'; Short=CK II beta' gi|467975|gb|AAA53234.1| casein kinase II beta subunit CKB2 [Arabidopsis thaliana] gi|2245122|emb|CAB10544.1| casein kinase II beta chain CKB2 [Arabidopsis thaliana] gi|7268516|emb|CAB78767.1| casein kinase II beta chain CKB2 [Arabidopsis thaliana] gi|21554030|gb|AAM63111.1| casein kinase II beta chain CKB2 [Arabidopsis thaliana] gi|26453134|dbj|BAC43643.1| putative casein kinase II beta chain CKB2 [Arabidopsis thaliana] gi|28950839|gb|AAO63343.1| At4g17640 [Arabidopsis thaliana] gi|332658527|gb|AEE83927.1| casein kinase 2 subunit beta' [Arabidopsis thaliana]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 188/210 (89%), Positives = 204/210 (97%)

Query: 41  VIEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPY 100
            ++ S+TDSEES+VSGSDG+DTSWISWFCNLRGNEFFCEVDD+YIQDDFNLCGLS QVPY
Sbjct: 73  AVDISDTDSEESEVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSHQVPY 132

Query: 101 YDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYD 160
           YDYALDLILDVESSHG+MFTEEQNEL+ESAAEMLYG+IH R+ILTSKG+A+ML+KYKNYD
Sbjct: 133 YDYALDLILDVESSHGEMFTEEQNELIESAAEMLYGMIHARFILTSKGLASMLDKYKNYD 192

Query: 161 FGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPH 220
           FGRCPRVYCCGQPCLPVGQSDIPR+STVKIYCPKCED+YYPRSKYQGNIDGAYFGTTFPH
Sbjct: 193 FGRCPRVYCCGQPCLPVGQSDIPRASTVKIYCPKCEDVYYPRSKYQGNIDGAYFGTTFPH 252

Query: 221 LFLMTYGHLKPQKATQSYVPRVFGFKLHKP 250
           LFLMTYGHLKPQKA+QSY  RVFGFKLHKP
Sbjct: 253 LFLMTYGHLKPQKASQSYTQRVFGFKLHKP 282

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195628750|gb|ACG36205.1| casein kinase II subunit beta-4 [Zea mays] gi|414886790|tpg|DAA62804.1| TPA: casein kinase II subunit beta-4 [Zea mays]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/207 (93%), Positives = 201/207 (97%)

Query: 44  ESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDY 103
           ES++DSE SDVSGSDG+DTSWISW+CNLRGNEFFCEVDD+YIQDDFNLCGLSSQVPYYDY
Sbjct: 67  ESDSDSEASDVSGSDGEDTSWISWYCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDY 126

Query: 104 ALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGR 163
           ALDLILD+ESSHGDMFTEEQNELVESAAEMLYGLIH RYILTSKG+AAMLEKYKNYDFGR
Sbjct: 127 ALDLILDIESSHGDMFTEEQNELVESAAEMLYGLIHARYILTSKGLAAMLEKYKNYDFGR 186

Query: 164 CPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFL 223
           CPRVYCCGQPCLPVGQSDI RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFL
Sbjct: 187 CPRVYCCGQPCLPVGQSDIHRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFL 246

Query: 224 MTYGHLKPQKATQSYVPRVFGFKLHKP 250
           MTY HLKPQK +Q YVPRVFGFKLHKP
Sbjct: 247 MTYEHLKPQKLSQRYVPRVFGFKLHKP 273

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:2129316	282	CKB2 "casein kinase II beta ch	0.748	0.663	0.919	1.5e-99
TAIR|locus:2152002	287	CKB1 "casein kinase II beta ch	0.748	0.651	0.930	3.9e-99
TAIR|locus:2042431	283	CKB4 "casein kinase II beta su	0.74	0.653	0.897	9.7e-96
TAIR|locus:2081937	276	CKB3 "casein kinase II beta ch	0.748	0.677	0.871	1.3e-93
UNIPROTKB|P67869	215	CSNK2B "Casein kinase II subun	0.74	0.860	0.594	7.9e-62
UNIPROTKB|P67868	215	CSNK2B "Casein kinase II subun	0.74	0.860	0.594	7.9e-62
UNIPROTKB|P67870	215	CSNK2B "Casein kinase II subun	0.74	0.860	0.594	7.9e-62
UNIPROTKB|Q5SRQ6	234	CSNK2B "Casein kinase II subun	0.74	0.790	0.594	7.9e-62
UNIPROTKB|K7GQK6	235	CSNK2B "Casein kinase II subun	0.74	0.787	0.594	7.9e-62
UNIPROTKB|P67872	215	CSNK2B "Casein kinase II subun	0.74	0.860	0.594	7.9e-62

TAIR|locus:2129316 CKB2 "casein kinase II beta chain 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 172/187 (91%), Positives = 183/187 (97%)

Query:    64 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 123
             WISWFCNLRGNEFFCEVDD+YIQDDFNLCGLS QVPYYDYALDLILDVESSHG+MFTEEQ
Sbjct:    96 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHGEMFTEEQ 155

Query:   124 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 183
             NEL+ESAAEMLYG+IH R+ILTSKG+A+ML+KYKNYDFGRCPRVYCCGQPCLPVGQSDIP
Sbjct:   156 NELIESAAEMLYGMIHARFILTSKGLASMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 215

Query:   184 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 243
             R+STVKIYCPKCED+YYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKA+QSY  RVF
Sbjct:   216 RASTVKIYCPKCEDVYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKASQSYTQRVF 275

Query:   244 GFKLHKP 250
             GFKLHKP
Sbjct:   276 GFKLHKP 282

GO:0005634 "nucleus" evidence=ISM

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISS

TAIR|locus:2152002 CKB1 "casein kinase II beta chain 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 174/187 (93%), Positives = 182/187 (97%)

Query:    64 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 123
             WISWFCNLRGNEFFCEVDD+YIQDDFNLCGLSS VPYY+YALDLILDVESS G+MFTEEQ
Sbjct:   101 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQGEMFTEEQ 160

Query:   124 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 183
             NEL+ESAAEMLYGLIH RYILTSKG+AAML+KYKNYDFGRCPRVYCCGQPCLPVGQSD+P
Sbjct:   161 NELIESAAEMLYGLIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDLP 220

Query:   184 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 243
             RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKP KATQ+YV RVF
Sbjct:   221 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPAKATQNYVQRVF 280

Query:   244 GFKLHKP 250
             GFKLHKP
Sbjct:   281 GFKLHKP 287

GO:0005634 "nucleus" evidence=ISM

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS;IDA

GO:0019887 "protein kinase regulator activity" evidence=IEA;IGI;IDA

GO:0071900 "regulation of protein serine/threonine kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2042431 CKB4 "casein kinase II beta subunit 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 166/185 (89%), Positives = 180/185 (97%)

Query:    64 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 123
             WISWFCNLRGNEFFCEVD++YIQDDFNLCGLS QVPYYDYALDLILDVESS+GDMFTEEQ
Sbjct:    96 WISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNGDMFTEEQ 155

Query:   124 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 183
             +E+VESAAEMLYGLIHVRYILT+KGMAAM+EKYKNYDFGRCPRV+CCGQ CLPVGQSDIP
Sbjct:   156 HEMVESAAEMLYGLIHVRYILTTKGMAAMMEKYKNYDFGRCPRVFCCGQSCLPVGQSDIP 215

Query:   184 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 243
             RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLM YG++KPQK  Q+YVP++F
Sbjct:   216 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMAYGNMKPQKPAQNYVPKIF 275

Query:   244 GFKLH 248
             GFK+H
Sbjct:   276 GFKVH 280

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IMP

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2081937 CKB3 "casein kinase II beta chain 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 163/187 (87%), Positives = 180/187 (96%)

Query:    64 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 123
             WISWFCNLRGN+FFCEVD++YIQDDFNLCGLS QVPYYDYALDLILDV++S+ +MFT+EQ
Sbjct:    90 WISWFCNLRGNDFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVDASNSEMFTDEQ 149

Query:   124 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 183
             +E+VESAAEMLYGLIHVRYILT+KGMAAM EKYKN DFGRCPRV+CCGQ CLPVGQSDIP
Sbjct:   150 HEMVESAAEMLYGLIHVRYILTTKGMAAMTEKYKNCDFGRCPRVFCCGQSCLPVGQSDIP 209

Query:   184 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 243
             RSSTVKIYCPKCEDI YPRSK+QGNIDGAYFGTTFPHLFLMTYG+LKPQK TQSYVP++F
Sbjct:   210 RSSTVKIYCPKCEDISYPRSKFQGNIDGAYFGTTFPHLFLMTYGNLKPQKPTQSYVPKIF 269

Query:   244 GFKLHKP 250
             GFK+HKP
Sbjct:   270 GFKVHKP 276

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS;IDA

GO:0019887 "protein kinase regulator activity" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0008134 "transcription factor binding" evidence=IDA

UNIPROTKB|P67869 CSNK2B "Casein kinase II subunit beta" [Gallus gallus (taxid:9031)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 110/185 (59%), Positives = 138/185 (74%)

Query:    64 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 123
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   124 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 183
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   184 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 243
               + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++
Sbjct:   129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188

Query:   244 GFKLH 248
             GFK+H
Sbjct:   189 GFKIH 193

GO:0005956 "protein kinase CK2 complex" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0031519 "PcG protein complex" evidence=ISS

UNIPROTKB|P67868 CSNK2B "Casein kinase II subunit beta" [Bos taurus (taxid:9913)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 110/185 (59%), Positives = 138/185 (74%)

Query:    64 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 123
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   124 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 183
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   184 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 243
               + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++
Sbjct:   129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188

Query:   244 GFKLH 248
             GFK+H
Sbjct:   189 GFKIH 193

GO:0031519 "PcG protein complex" evidence=ISS

GO:0061154 "endothelial tube morphogenesis" evidence=IEA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0032927 "positive regulation of activin receptor signaling pathway" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0010862 "positive regulation of pathway-restricted SMAD protein phosphorylation" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005956 "protein kinase CK2 complex" evidence=IEA

UNIPROTKB|P67870 CSNK2B "Casein kinase II subunit beta" [Homo sapiens (taxid:9606)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 110/185 (59%), Positives = 138/185 (74%)

Query:    64 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 123
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   124 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 183
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   184 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 243
               + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++
Sbjct:   129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188

Query:   244 GFKLH 248
             GFK+H
Sbjct:   189 GFKIH 193

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007165 "signal transduction" evidence=TAS

GO:0005956 "protein kinase CK2 complex" evidence=NAS

GO:0019887 "protein kinase regulator activity" evidence=NAS

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0031519 "PcG protein complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IDA

GO:0005102 "receptor binding" evidence=IPI

GO:0004674 "protein serine/threonine kinase activity" evidence=TAS

GO:0032927 "positive regulation of activin receptor signaling pathway" evidence=IMP

GO:0010862 "positive regulation of pathway-restricted SMAD protein phosphorylation" evidence=IDA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0043623 "cellular protein complex assembly" evidence=NAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0051101 "regulation of DNA binding" evidence=NAS

GO:0061154 "endothelial tube morphogenesis" evidence=IMP

GO:0045859 "regulation of protein kinase activity" evidence=NAS

UNIPROTKB|Q5SRQ6 CSNK2B "Casein kinase II subunit beta" [Homo sapiens (taxid:9606)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 110/185 (59%), Positives = 138/185 (74%)

Query:    64 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 123
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:    28 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 87

Query:   124 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 183
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    88 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 147

Query:   184 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 243
               + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++
Sbjct:   148 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 207

Query:   244 GFKLH 248
             GFK+H
Sbjct:   208 GFKIH 212

GO:0005956 "protein kinase CK2 complex" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|K7GQK6 CSNK2B "Casein kinase II subunit beta" [Sus scrofa (taxid:9823)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 110/185 (59%), Positives = 138/185 (74%)

Query:    64 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 123
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:    29 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 88

Query:   124 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 183
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    89 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 148

Query:   184 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 243
               + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++
Sbjct:   149 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 208

Query:   244 GFKLH 248
             GFK+H
Sbjct:   209 GFKIH 213

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005956 "protein kinase CK2 complex" evidence=IEA

UNIPROTKB|P67872 CSNK2B "Casein kinase II subunit beta" [Sus scrofa (taxid:9823)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 110/185 (59%), Positives = 138/185 (74%)

Query:    64 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 123
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   124 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 183
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   184 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 243
               + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++
Sbjct:   129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188

Query:   244 GFKLH 248
             GFK+H
Sbjct:   189 GFKIH 193

GO:0031519 "PcG protein complex" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005956 "protein kinase CK2 complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54PF1	CK2B_DICDI	No assigned EC number	0.5560	0.804	0.75	yes	no
P40228	CSK2B_ARATH	No assigned EC number	0.9230	0.832	0.7247	yes	no
P67869	CSK2B_CHICK	No assigned EC number	0.5833	0.768	0.8930	yes	no
P67868	CSK2B_BOVIN	No assigned EC number	0.5833	0.768	0.8930	yes	no
P08182	CSK2B_DROME	No assigned EC number	0.5677	0.768	0.8170	yes	no
P28548	CSK2B_CAEEL	No assigned EC number	0.5544	0.76	0.8119	yes	no
Q91398	CSK2B_DANRE	No assigned EC number	0.5833	0.768	0.8930	yes	no
P38930	CSK2C_YEAST	No assigned EC number	0.5026	0.744	0.7209	yes	no
P40232	CSK2B_SCHPO	No assigned EC number	0.5837	0.728	0.7878	yes	no
P67870	CSK2B_HUMAN	No assigned EC number	0.5833	0.768	0.8930	yes	no
P67871	CSK2B_MOUSE	No assigned EC number	0.5833	0.768	0.8930	yes	no
P67872	CSK2B_PIG	No assigned EC number	0.5833	0.768	0.8930	yes	no
P67873	CSK2B_RABIT	No assigned EC number	0.5833	0.768	0.8930	yes	no
P67874	CSK2B_RAT	No assigned EC number	0.5833	0.768	0.8930	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_400083 hypothetical protein (300 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	250
smart01085	184	smart01085, CK_II_beta, Casein kinase II regulator	1e-117
pfam01214	183	pfam01214, CK_II_beta, Casein kinase II regulatory	1e-113
PTZ00396	251	PTZ00396, PTZ00396, Casein kinase II subunit beta;	1e-104
COG5041	242	COG5041, SKB2, Casein kinase II, beta subunit [Sig	4e-89

>gnl|CDD|198153 smart01085, CK_II_beta, Casein kinase II regulatory subunit

 Score =  333 bits (857), Expect = e-117
 Identities = 116/184 (63%), Positives = 145/184 (78%)

Query: 63  SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEE 122
           SWI WFC+L+GNEFFCEVD+++I+DDFNL GL+S+VP Y  ALDLILD+E          
Sbjct: 1   SWIDWFCSLKGNEFFCEVDEDFIEDDFNLTGLNSEVPNYREALDLILDLEPDDDLDEDAS 60

Query: 123 QNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDI 182
           Q  L+ES+AE+LYGLIH RYILT +G+A MLEKYK  DFG CPRV+C GQP LPVG SD+
Sbjct: 61  QKSLIESSAELLYGLIHARYILTPRGLALMLEKYKRGDFGTCPRVFCNGQPLLPVGLSDV 120

Query: 183 PRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRV 242
           P  STVK+YCP+C+D+Y P+S    NIDGA+FGT+FPHLFLMTY  L P+K  + Y+P++
Sbjct: 121 PGKSTVKLYCPRCQDVYTPKSSRHANIDGAFFGTSFPHLFLMTYPELIPKKPKEQYIPKI 180

Query: 243 FGFK 246
           +GFK
Sbjct: 181 YGFK 184

Length = 184

>gnl|CDD|216369 pfam01214, CK_II_beta, Casein kinase II regulatory subunit

 Score =  322 bits (829), Expect = e-113
 Identities = 114/184 (61%), Positives = 140/184 (76%), Gaps = 1/184 (0%)

Query: 63  SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEE 122
           SWI WFC+L+GNEFFCEVD++YI+DDFNL GLS +VP Y  ALDLILD E    +   ++
Sbjct: 1   SWIDWFCSLKGNEFFCEVDEDYIEDDFNLYGLSEEVPNYKEALDLILDKEPES-ESLDDD 59

Query: 123 QNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDI 182
           + E +E  AE LYGLIH RYILT KG+A M EKYK  +FG CPRV C GQP LP+G SD+
Sbjct: 60  KKEEIEKEAEKLYGLIHARYILTPKGLAQMKEKYKEGEFGTCPRVLCNGQPLLPIGLSDV 119

Query: 183 PRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRV 242
           P  STVK+YCP+C+D+Y P+S    NIDGAYFGT+FPH+FLMTY  L P+   + Y+PR+
Sbjct: 120 PGESTVKLYCPRCQDVYNPKSSRHSNIDGAYFGTSFPHMFLMTYPELVPKPPAKQYIPRI 179

Query: 243 FGFK 246
           FGFK
Sbjct: 180 FGFK 183

Length = 183

>gnl|CDD|240400 PTZ00396, PTZ00396, Casein kinase II subunit beta; Provisional

 Score =  302 bits (775), Expect = e-104
 Identities = 107/207 (51%), Positives = 142/207 (68%), Gaps = 1/207 (0%)

Query: 44  ESETDSEESDVS-GSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYD 102
           + E   EES  S     +   WI WFC+L+G+EF CEVD+++I+D+FNL GL S+ P+Y+
Sbjct: 2   DMEFSDEESSYSEEPSEESMGWIEWFCSLKGHEFLCEVDEDFIRDEFNLYGLKSKFPFYN 61

Query: 103 YALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFG 162
            ALD+ILD E    +   +EQ   V   A  LYGLIH R+I T KG+A M EKY    FG
Sbjct: 62  EALDMILDSEPPDDEDLEDEQFLEVYQEASDLYGLIHARFITTPKGLALMREKYLQGKFG 121

Query: 163 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF 222
            CPRV C GQ  LP+G SD+ ++S VK+YCP+C+++Y+P+     +IDGA+FGT+FPHLF
Sbjct: 122 HCPRVLCEGQNVLPIGLSDVLKTSRVKVYCPRCQEVYHPKKSSLLDIDGAFFGTSFPHLF 181

Query: 223 LMTYGHLKPQKATQSYVPRVFGFKLHK 249
           LMTY  L P K  Q YVP++FGFK+HK
Sbjct: 182 LMTYPELIPTKPPQYYVPKIFGFKVHK 208

Length = 251

>gnl|CDD|227374 COG5041, SKB2, Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription]

 Score =  263 bits (673), Expect = 4e-89
 Identities = 107/205 (52%), Positives = 145/205 (70%), Gaps = 3/205 (1%)

Query: 46  ETDSEE-SDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYA 104
           E DS+  SD      +   WI WFC+ +GNE+FCEV +E+I+D FNL GLS +VP+Y   
Sbjct: 7   EDDSDNLSDDDSDSSEYDEWIDWFCSRKGNEYFCEVPEEFIEDRFNLTGLSREVPHYSEV 66

Query: 105 LDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRC 164
           LDLILD  +        ++ +++E +A  LYGLIH RYI+T  G+ AMLEKYK+ +FG C
Sbjct: 67  LDLILDKLAP--SNLENDEVDIIEESARQLYGLIHARYIITKSGLQAMLEKYKSREFGAC 124

Query: 165 PRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLM 224
           PRVYC GQ  LPVG SDIP  S+VK+YCP CED+Y P+S    +IDGA+FGT+FPH+FL 
Sbjct: 125 PRVYCNGQQVLPVGLSDIPGKSSVKLYCPSCEDLYLPKSSRHQSIDGAFFGTSFPHMFLQ 184

Query: 225 TYGHLKPQKATQSYVPRVFGFKLHK 249
           T+  L P+++ + Y+PR+FGF++H 
Sbjct: 185 TFPELFPKRSCERYIPRIFGFRIHS 209

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
KOG3092	216	consensus Casein kinase II, beta subunit [Signal t	100.0
PTZ00396	251	Casein kinase II subunit beta; Provisional	100.0
PF01214	184	CK_II_beta: Casein kinase II regulatory subunit; I	100.0
COG5041	242	SKB2 Casein kinase II, beta subunit [Signal transd	100.0

>KOG3092 consensus Casein kinase II, beta subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=5.3e-96  Score=637.49  Aligned_cols=193  Identities=70%  Similarity=1.295  Sum_probs=185.3

Q ss_pred             CCCCCchHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhcc
Q 025636           58 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL  137 (250)
Q Consensus        58 ~~e~~sWI~wFcs~~gneff~eVdedyI~D~FNL~GL~~~V~~y~~AL~~ILd~~~~~~~~~~d~~~~~ie~~A~~LYGL  137 (250)
                      ++++.+||+|||+++|||||||||+|||+|+|||+||+.+||+|++||++|||.+++++....+++.+++|++|++||||
T Consensus         3 ~see~sWI~wFc~~~GnEffceVdeeyIqD~FNltgL~~~Vp~y~~ald~ILD~~~~~~~e~~~~~~~~iE~aae~LYGL   82 (216)
T KOG3092|consen    3 SSEEVSWISWFCGLRGNEFFCEVDEEYIQDRFNLTGLSEQVPNYRQALDLILDLEPDDELEDNAEQSELIESAAEMLYGL   82 (216)
T ss_pred             cccccchHHHHhcCCCCeeeEecCHHHhhhhhccccccccCchHHHHHHHhhcCCCCcccccchhHHHHHHHHHHHHHHh
Confidence            34555799999999999999999999999999999999999999999999999998887766666778999999999999


Q ss_pred             ccceeeeChHHHHHHHHhhccCccCCCCCcCCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCc
Q 025636          138 IHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTT  217 (250)
Q Consensus       138 IHARYIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~DvY~P~s~~~~~iDGAyFGts  217 (250)
                      ||||||+|.+||++|++||++++||+||||+|++|+|||+||||+||+++||+|||+|+|||.|+|+++++|||||||||
T Consensus        83 IHaRYIlT~~Gl~~M~eKy~~~dFG~CPRV~C~~q~~LPvGLsDipg~~~VklYCP~C~dvY~P~ssr~~~iDGa~fGts  162 (216)
T KOG3092|consen   83 IHARYILTNRGLAAMLEKYKNGDFGRCPRVYCCGQPVLPVGLSDIPGKSTVKLYCPSCEDVYIPKSSRHGNIDGAYFGTS  162 (216)
T ss_pred             hhheeeechHHHHHHHHHHhcCCCCcCCcccccCCccccccccCCCCcceEEEeCCCcccccccccccccccccchhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHhCCCCCCCCCCccceeeeeeeecCC
Q 025636          218 FPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP  250 (250)
Q Consensus       218 Fph~Fl~~yP~l~p~~~~~~Y~PrIfGFkI~~~  250 (250)
                      |||||+|+||++.|+++.++|+|||||||||+.
T Consensus       163 FPhmff~~~p~l~P~r~~~~yvPriyGFkih~~  195 (216)
T KOG3092|consen  163 FPHMFFMTHPELRPKRPTEQYVPRIYGFKIHKP  195 (216)
T ss_pred             CchhHHHhccccCCCcchhhhcchheeeeeCch
Confidence            999999999999999999999999999999973

>PTZ00396 Casein kinase II subunit beta; Provisional

Probab=100.00  E-value=1.1e-90  Score=625.76  Aligned_cols=193  Identities=53%  Similarity=1.046  Sum_probs=183.2

Q ss_pred             CCCCCchHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhcc
Q 025636           58 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL  137 (250)
Q Consensus        58 ~~e~~sWI~wFcs~~gneff~eVdedyI~D~FNL~GL~~~V~~y~~AL~~ILd~~~~~~~~~~d~~~~~ie~~A~~LYGL  137 (250)
                      ++++.+||+|||+++||+|||+||+|||+|+||||||+.+||+|++||+||||.++++++..+++..+.++++|++||||
T Consensus        17 s~~~~sWI~wF~~~~gne~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGL   96 (251)
T PTZ00396         17 SEESMGWIEWFCSLKGHEFLCEVDEDFIRDEFNLYGLKSKFPFYNEALDMILDSEPPDDEDLEDEQFLEVYQEASDLYGL   96 (251)
T ss_pred             CCCcCcHHHHHhCCCCCeeEEEeCHHHhcCcchhhCccccccCHHHHHHHHcCCCCCccccccchhHHHHHHHHHHHHHH
Confidence            46677999999999999999999999999999999999999999999999999987765545566778899999999999


Q ss_pred             ccceeeeChHHHHHHHHhhccCccCCCCCcCCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCc
Q 025636          138 IHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTT  217 (250)
Q Consensus       138 IHARYIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~DvY~P~s~~~~~iDGAyFGts  217 (250)
                      ||||||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||+|||+|+|||+|++.++..|||||||||
T Consensus        97 IHARyI~T~~Gl~~M~eKY~~g~FG~CPRv~C~~q~~LPvGlSd~~g~~~VKlyCP~C~DvY~p~s~~~~~iDGA~FGts  176 (251)
T PTZ00396         97 IHARFITTPKGLALMREKYLQGKFGHCPRVLCEGQNVLPIGLSDVLKTSRVKVYCPRCQEVYHPKKSSLLDIDGAFFGTS  176 (251)
T ss_pred             HhHhHhcCHHHHHHHHHHhhCCCCCCCCCccCCCCcccccccCCCcCcCceeEeCCCchhhcCCCCccccccccceecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999877669999999999


Q ss_pred             hhhHHHHHhCCCCCCCCCCccceeeeeeeecCC
Q 025636          218 FPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP  250 (250)
Q Consensus       218 Fph~Fl~~yP~l~p~~~~~~Y~PrIfGFkI~~~  250 (250)
                      |||||+|+||++.|++++++|+|||||||||++
T Consensus       177 Fph~fl~~~p~l~p~~~~~~yvPrifGFki~~~  209 (251)
T PTZ00396        177 FPHLFLMTYPELIPTKPPQYYVPKIFGFKVHKK  209 (251)
T ss_pred             HHHHHHHhccccCCCCCCCccCCeeeeEEeccc
Confidence            999999999999999999999999999999964

>PF01214 CK_II_beta: Casein kinase II regulatory subunit; InterPro: IPR000704 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=100.00  E-value=9.8e-89  Score=589.58  Aligned_cols=184  Identities=64%  Similarity=1.221  Sum_probs=153.9

Q ss_pred             chHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhcccccee
Q 025636           63 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY  142 (250)
Q Consensus        63 sWI~wFcs~~gneff~eVdedyI~D~FNL~GL~~~V~~y~~AL~~ILd~~~~~~~~~~d~~~~~ie~~A~~LYGLIHARY  142 (250)
                      +||+|||+++||+||||||+|||+|+|||+||+++||+|++||++|||.+.++++..++++.+.++++|++|||||||||
T Consensus         1 sWI~~F~~~~~~~~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLIHaRy   80 (184)
T PF01214_consen    1 SWIDWFCSLKGNEFFCEVDEDYIEDSFNLYGLSSQVPNYDEALDMILDKEPDEDEESDDESDDEIEKSAEMLYGLIHARY   80 (184)
T ss_dssp             -HHHHHHHSTTTTT-----HHHHHSGGGGTTGGGTSTTHHHHHHHHTT----TTTTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHhCCCCCeEEEEeCHHHHhCcchhcChhhccccHHHHHHHHcCCCcccchhccchhHHHHHHHHHHHHhhhHHHH
Confidence            69999999999999999999999999999999999999999999999998876556667778899999999999999999


Q ss_pred             eeChHHHHHHHHhhccCccCCCCCcCCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCchhhHH
Q 025636          143 ILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF  222 (250)
Q Consensus       143 IlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~DvY~P~s~~~~~iDGAyFGtsFph~F  222 (250)
                      |+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|++.+.++||||||||||||||
T Consensus        81 I~T~~Gl~~m~eKy~~g~FG~CPRv~C~~~~lLPiGlsd~~g~~~vKlyCP~C~dvY~p~~~~~~~iDGA~FG~sFph~f  160 (184)
T PF01214_consen   81 ILTPRGLEQMKEKYEQGDFGRCPRVYCNGQPLLPIGLSDTPGESTVKLYCPRCKDVYHPPSSRHSNIDGAYFGPSFPHLF  160 (184)
T ss_dssp             TTSHHHHHHHHHHHHTTTT-B-SBGGGTT-B-EEEBS-SSTTS-BBEEEETTTTEEE--SSGGGTTSBGGGTTSSHHHHH
T ss_pred             hhcHHHHHHHHHhhcCCcCCcCCcccCCCCceeCccCCCCCCccceeEECCCCccccCCCCccccceeccccCCccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888888999999999999999


Q ss_pred             HHHhCCCCCCCCCCccceeeeeee
Q 025636          223 LMTYGHLKPQKATQSYVPRVFGFK  246 (250)
Q Consensus       223 l~~yP~l~p~~~~~~Y~PrIfGFk  246 (250)
                      +|+||++.|+.+.++|+|||||||
T Consensus       161 ~~~~p~~~~~~~~~~y~PrifGFk  184 (184)
T PF01214_consen  161 LMTYPELIPSPPPKPYVPRIFGFK  184 (184)
T ss_dssp             HHH-GGGS-SS-SS----ECTTCE
T ss_pred             HHHCccccCCCCCCccCCcccccC
Confidence            999999999999999999999998

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Casein kinase, a ubiquitous, well-conserved protein kinase involved in cell metabolism and differentiation, is characterised by its preference for Ser or Thr in acidic stretches of amino acids. The enzyme is a tetramer of 2 alpha- and 2 beta-subunits [, ]. However, some species (e.g., mammals) possess 2 related forms of the alpha-subunit (alpha and alpha'), while others (e.g., fungi) possess 2 related beta-subunits (beta and beta') []. The alpha-subunit is the catalytic unit and contains regions characteristic of serine/threonine protein kinases. The beta-subunit is believed to be regulatory, possessing an N-terminal auto-phosphorylation site, an internal acidic domain, and a potential metal-binding motif []. The beta subunit is a highly conserved protein of about 25kDa that contains, in its central section, a cysteine-rich motif, CX(n)C, that could be involved in binding a metal such as zinc []. The mammalian beta-subunit gene promoter shares common features with those of other mammalian protein kinases and is closely related to the promoter of the regulatory subunit of cAMP-dependent protein kinase [].; GO: 0019887 protein kinase regulator activity, 0005956 protein kinase CK2 complex; PDB: 2R6M_B 1RQF_K 1DS5_G 1QF8_B 3EED_A 4DGL_A 1JWH_D.

>COG5041 SKB2 Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription]

Probab=100.00  E-value=9.9e-86  Score=577.53  Aligned_cols=188  Identities=54%  Similarity=1.131  Sum_probs=178.3

Q ss_pred             CCCchHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhcccc
Q 025636           60 DDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIH  139 (250)
Q Consensus        60 e~~sWI~wFcs~~gneff~eVdedyI~D~FNL~GL~~~V~~y~~AL~~ILd~~~~~~~~~~d~~~~~ie~~A~~LYGLIH  139 (250)
                      +...||+|||+++||||||+||++||+|+|||+||+..||+|++||++|||...++.  ..+.+-+.||.+|++||||||
T Consensus        22 ~y~~Wi~~F~~rkg~eyfc~V~~efIeDrFNltgL~~~Vp~y~~~ldlILD~~~~~~--~e~~~~d~iE~sa~~LYgLIH   99 (242)
T COG5041          22 EYDEWIDWFCSRKGNEYFCEVPEEFIEDRFNLTGLSREVPHYSEVLDLILDKLAPSN--LENDEVDIIEESARQLYGLIH   99 (242)
T ss_pred             HHHHHHHHHHcCCCCeeeeeCCHHHHHhhhhccchhhccchHHHHHHHHHhccCCcc--hhhhhhHHHHHHHHHHHHHHH
Confidence            334799999999999999999999999999999999999999999999999876543  233445789999999999999


Q ss_pred             ceeeeChHHHHHHHHhhccCccCCCCCcCCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCchh
Q 025636          140 VRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFP  219 (250)
Q Consensus       140 ARYIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~DvY~P~s~~~~~iDGAyFGtsFp  219 (250)
                      ||||+|..||++|++||+.++||+||||+||+|+|||+||||+||+++||||||+|.|||.|+|+++..|||||||||||
T Consensus       100 aRyIiT~~GL~~m~eKy~~~efG~CPRv~Cn~~~vLPvGLsDi~g~~~vkLyCpsC~dlY~p~Ssr~~~iDGa~fGtSFP  179 (242)
T COG5041         100 ARYIITKSGLQAMLEKYKSREFGACPRVYCNGQQVLPVGLSDIPGKSSVKLYCPSCEDLYLPKSSRHQSIDGAFFGTSFP  179 (242)
T ss_pred             hhheeeHHHHHHHHHHHhhcccCCCCcccccCcceeccccccCCCCceeEEecCchhhhcCcccccccccccchhccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhCCCCCCCCCCccceeeeeeeecC
Q 025636          220 HLFLMTYGHLKPQKATQSYVPRVFGFKLHK  249 (250)
Q Consensus       220 h~Fl~~yP~l~p~~~~~~Y~PrIfGFkI~~  249 (250)
                      |||+++||++.|+++.+.|+|||||||||+
T Consensus       180 h~f~~~~pel~p~~~~e~YiprIfGfri~~  209 (242)
T COG5041         180 HMFLQTFPELFPKRSCERYIPRIFGFRIHS  209 (242)
T ss_pred             hHHHHhchhhcCCcchhhhcceeeeeEeeh
Confidence            999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	250
1jwh_C	215	Crystal Structure Of Human Protein Kinase Ck2 Holoe		5e-66
3eed_A	193	Crystal Structure Of Human Protein Kinase Ck2 Regul		1e-65
1rqf_A	184	Structure Of Ck2 Beta Subunit Crystallized In The P		7e-60
1qf8_A	182	Truncated Form Of Casein Kinase Ii Beta Subunit (2-		5e-57

>pdb|1JWH|C Chain C, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme Length = 215

Iteration: 1
 Score =  247 bits (630), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 110/185 (59%), Positives = 138/185 (74%)
Query: 64  WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 123
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct: 9   WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 124 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 183
           ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 69  SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128
Query: 184 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 243
             + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++
Sbjct: 129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188
Query: 244 GFKLH 248
           GFK+H
Sbjct: 189 GFKIH 193

>pdb|3EED|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Regulatory Subunit (Ck2beta; Mutant 1-193) Length = 193

Iteration: 1
 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 110/185 (59%), Positives = 138/185 (74%)
Query: 64  WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 123
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct: 9   WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 124 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 183
           ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 69  SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128
Query: 184 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 243
             + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++
Sbjct: 129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188
Query: 244 GFKLH 248
           GFK+H
Sbjct: 189 GFKIH 193

>pdb|1RQF|A Chain A, Structure Of Ck2 Beta Subunit Crystallized In The Presence Of A P21waf1 Peptide Length = 184

Iteration: 1
 Score =  226 bits (577), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 127/170 (74%)
Query: 64  WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 123
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct: 15  WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 74
Query: 124 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 183
           ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 75  SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 134
Query: 184 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQK 233
             + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++
Sbjct: 135 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 184

>pdb|1QF8|A Chain A, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182) From Homo Sapiens Length = 182

Iteration: 1
 Score =  217 bits (552), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 122/174 (70%)
Query: 64  WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 123
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD ILD+E          Q
Sbjct: 9   WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDXILDLEPDEELEDNPNQ 68
Query: 124 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 183
           ++L+E AAE LYGLIH RYILT++G+A  LEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 69  SDLIEQAAEXLYGLIHARYILTNRGIAQXLEKYQQGDFGYCPRVYCENQPXLPIGLSDIP 128
Query: 184 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQS 237
             + VK+YCPKC D+Y P+S    + DGAYFGT FPH     +   +P++    
Sbjct: 129 GEAXVKLYCPKCXDVYTPKSSRHHHTDGAYFGTGFPHXLFXVHPEYRPKRPANQ 182

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
4dgl_A	215	Casein kinase II subunit beta; protein kinase, tra	1e-111
1qf8_A	182	Casein kinase II; casein kinase beta subunit (1-18	1e-100

>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E* Length = 215

 Score =  318 bits (815), Expect = e-111
 Identities = 112/193 (58%), Positives = 142/193 (73%)

Query: 57  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 116
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 117 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 176
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 177 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 236
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 237 SYVPRVFGFKLHK 249
            +VPR++GFK+H 
Sbjct: 182 QFVPRLYGFKIHP 194

>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A Length = 182

 Score =  289 bits (740), Expect = e-100
 Identities = 105/180 (58%), Positives = 131/180 (72%)

Query: 57  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 116
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 117 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 176
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 177 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 236
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
4dgl_A	215	Casein kinase II subunit beta; protein kinase, tra	100.0
1qf8_A	182	Casein kinase II; casein kinase beta subunit (1-18	100.0

>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*

Probab=100.00  E-value=4.1e-95  Score=640.38  Aligned_cols=193  Identities=58%  Similarity=1.125  Sum_probs=174.6

Q ss_pred             CCCCCCchHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhc
Q 025636           57 SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYG  136 (250)
Q Consensus        57 ~~~e~~sWI~wFcs~~gneff~eVdedyI~D~FNL~GL~~~V~~y~~AL~~ILd~~~~~~~~~~d~~~~~ie~~A~~LYG  136 (250)
                      |++++.+||+|||+++||+||||||+|||+|+|||+||+++||+|++||+||||.+++++.+.++++.+.++++|++|||
T Consensus         2 s~s~~~sWI~wFc~~~gneffceVd~dyI~D~FNL~GL~~~Vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~A~~LYG   81 (215)
T 4dgl_A            2 SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYG   81 (215)
T ss_dssp             ------CHHHHHHTSTTCTTCCCCCHHHHHSTTTTTTGGGTSSSHHHHHHHHTTC--------CTTHHHHHHHHHHHHHH
T ss_pred             CCcccCcHHHHHhCCCCCeEEEEeCHHHhcCcccccCchhccccHHHHHHHHcCCCCcchhcccchhHHHHHHHHHHHhh
Confidence            34566799999999999999999999999999999999999999999999999998765444445567789999999999


Q ss_pred             cccceeeeChHHHHHHHHhhccCccCCCCCcCCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCC
Q 025636          137 LIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGT  216 (250)
Q Consensus       137 LIHARYIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~DvY~P~s~~~~~iDGAyFGt  216 (250)
                      |||||||+|++||++|++||++|+||+||||+|++|+|||+|+||+||+++||||||+|+|||+|+++++++||||||||
T Consensus        82 LIHARYIlT~~Gl~~M~eKY~~g~FG~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~DvY~P~s~r~~~iDGAyFGt  161 (215)
T 4dgl_A           82 LIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGT  161 (215)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCCEECCSSTTSTTSBGGGTTT
T ss_pred             hhhHhheecHHHHHHHHHHHhcCCCCcCCccccCCCceeccccCCCCCccceeEeCCCcccccCCCcccccccccceecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             chhhHHHHHhCCCCCCCCCCccceeeeeeeecC
Q 025636          217 TFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK  249 (250)
Q Consensus       217 sFph~Fl~~yP~l~p~~~~~~Y~PrIfGFkI~~  249 (250)
                      ||||||+|+||+++|+++.++|+|||||||||+
T Consensus       162 sFph~f~~~~p~l~p~~~~~~yvPrifGFkih~  194 (215)
T 4dgl_A          162 GFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHP  194 (215)
T ss_dssp             THHHHHHHHCGGGCCCSCSCCCCCEETTEEECT
T ss_pred             cchHHHHHHcccccCCCCCCcccCeEeEEEecH
Confidence            999999999999999999999999999999996

>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A

Probab=100.00  E-value=5.3e-88  Score=583.11  Aligned_cols=179  Identities=58%  Similarity=1.111  Sum_probs=162.1

Q ss_pred             CCCCCchHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhcc
Q 025636           58 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL  137 (250)
Q Consensus        58 ~~e~~sWI~wFcs~~gneff~eVdedyI~D~FNL~GL~~~V~~y~~AL~~ILd~~~~~~~~~~d~~~~~ie~~A~~LYGL  137 (250)
                      ++++.+||+|||+++||+||||||+|||+|+|||+||+++||+|++||+||||.+++++.+.++++.+.++++|++||||
T Consensus         3 ~~~~~sWI~wF~~~~gneffceVd~dyI~D~FNL~GL~~~vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~a~~LYGL   82 (182)
T 1qf8_A            3 SSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGL   82 (182)
T ss_dssp             ----CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHH
T ss_pred             CCccCcHHHHHhCCCCCeEEEEeCHHHhcCcchhhCccccccCHHHHHHHHhCCCCccccccchhhhHHHHHHHHHHhch
Confidence            45567899999999999999999999999999999999999999999999999987655444455678899999999999


Q ss_pred             ccceeeeChHHHHHHHHhhccCccCCCCCcCCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCc
Q 025636          138 IHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTT  217 (250)
Q Consensus       138 IHARYIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~DvY~P~s~~~~~iDGAyFGts  217 (250)
                      ||||||+|++||++|++||++|+||+||||+|++|+|||+|+||+||+++||+|||+|+|||+|++.++++|||||||||
T Consensus        83 IHaRyIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~DvY~p~s~~~~~iDGAyFGts  162 (182)
T 1qf8_A           83 IHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTG  162 (182)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSGGGTTSBGGGTCSS
T ss_pred             hhhhhcccHHHHHHHHHhhhcCcCCCCCccccCCCcccCCccCCCCCCCceEEECCCccceeCCCcccccccccceecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988878999999999


Q ss_pred             hhhHHHHHhCCCCCCCCCC
Q 025636          218 FPHLFLMTYGHLKPQKATQ  236 (250)
Q Consensus       218 Fph~Fl~~yP~l~p~~~~~  236 (250)
                      |||||+|+||++.|+++.+
T Consensus       163 Fph~f~~~~p~l~p~~~~~  181 (182)
T 1qf8_A          163 FPHMLFMVHPEYRPKRPAN  181 (182)
T ss_dssp             HHHHHHHHCGGGSCSCC--
T ss_pred             hHHHHHHHcccccCCCCCC
Confidence            9999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	250
d1qf8a_	173	g.41.4.1 (A:) Casein kinase II beta subunit {Human	4e-98

>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Small proteins
fold: Rubredoxin-like
superfamily: Casein kinase II beta subunit
family: Casein kinase II beta subunit
domain: Casein kinase II beta subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  282 bits (722), Expect = 4e-98
 Identities = 104/171 (60%), Positives = 128/171 (74%)

Query: 63  SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEE 122
           SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          
Sbjct: 2   SWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPN 61

Query: 123 QNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDI 182
           Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDI
Sbjct: 62  QSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDI 121

Query: 183 PRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQK 233
           P  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++
Sbjct: 122 PGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	250
d1qf8a_	173	Casein kinase II beta subunit {Human (Homo sapiens	100.0

>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Casein kinase II beta subunit
family: Casein kinase II beta subunit
domain: Casein kinase II beta subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-86  Score=563.29  Aligned_cols=173  Identities=60%  Similarity=1.134  Sum_probs=161.2

Q ss_pred             CchHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhccccce
Q 025636           62 TSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVR  141 (250)
Q Consensus        62 ~sWI~wFcs~~gneff~eVdedyI~D~FNL~GL~~~V~~y~~AL~~ILd~~~~~~~~~~d~~~~~ie~~A~~LYGLIHAR  141 (250)
                      .|||+|||+++||+||||||+|||+|+|||+||+++||+|++||++|||.+++++...++.+.+.++++|+.||||||||
T Consensus         1 ~sWI~wF~~~~gne~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLIHaR   80 (173)
T d1qf8a_           1 VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHAR   80 (173)
T ss_dssp             CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHhCCCCCeEEEEeCHHHHcCcchhcCchhccccHHHHHHHHhccCCChhhhhhhhhhHHHHHHHHHHHHHhhhh
Confidence            48999999999999999999999999999999999999999999999999877655444566678999999999999999


Q ss_pred             eeeChHHHHHHHHhhccCccCCCCCcCCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCchhhH
Q 025636          142 YILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHL  221 (250)
Q Consensus       142 YIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~DvY~P~s~~~~~iDGAyFGtsFph~  221 (250)
                      ||+|++||++|+|||++|+||+||||+|++|+|||||+||+||+++||+|||+|+|||+|+++++++|||||||||||||
T Consensus        81 yI~T~~Gl~~m~eKy~~g~FG~CPRv~C~~~~~LPiGlSd~~g~~~vKlyCP~C~dvY~p~s~~~~~iDGA~FG~sFph~  160 (173)
T d1qf8a_          81 YILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHM  160 (173)
T ss_dssp             HTTSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSGGGTTSBGGGTCSSHHHH
T ss_pred             eeecHhHHHHHHHHHhCCCCCCCCCcccCCCcccccccCCCCCcCcceEECCChhhccCCCCcccCcccchhccCchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             HHHHhCCCCCCCC
Q 025636          222 FLMTYGHLKPQKA  234 (250)
Q Consensus       222 Fl~~yP~l~p~~~  234 (250)
                      |+|+||+++|++|
T Consensus       161 fl~~yp~l~P~~P  173 (173)
T d1qf8a_         161 LFMVHPEYRPKRP  173 (173)
T ss_dssp             HHHHCGGGSCSCC
T ss_pred             HHHHCcccCCCCC
Confidence            9999999999875