BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025637
MDEDEMEELDNKKDYDVEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFH
KISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGC
YNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITR
AKVLVTLPRNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTRADMERHLRK
LRDFNVSNWF

High Scoring Gene Products

Symbol, full name Information P value
PTAC6
AT1G21600 		protein from Arabidopsis thaliana 3.5e-114

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025637
        (250 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2026972 - symbol:PTAC6 "AT1G21600" species:370...  1126  3.5e-114  1


>TAIR|locus:2026972 [details] [associations]
            symbol:PTAC6 "AT1G21600" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009295 "nucleoid"
            evidence=IDA] [GO:0009508 "plastid chromosome" evidence=IDA]
            [GO:0042793 "transcription from plastid promoter" evidence=RCA;IMP]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=RCA;IMP] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0006417 "regulation of translation" evidence=RCA] [GO:0009657
            "plastid organization" evidence=RCA] [GO:0009902 "chloroplast
            relocation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
            evidence=RCA] [GO:0010027 "thylakoid membrane organization"
            evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
            metabolic process" evidence=RCA] [GO:0035304 "regulation of protein
            dephosphorylation" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0045893 EMBL:AC007727
            GO:GO:0009508 GO:GO:0042793 EMBL:AF324715 EMBL:AF326894
            EMBL:AY052666 EMBL:AF446886 EMBL:AY113873 EMBL:AK317001
            IPI:IPI00540143 PIR:H86348 RefSeq:NP_001031076.1 RefSeq:NP_564144.1
            UniGene:At.21218 STRING:Q9XI19 PaxDb:Q9XI19 PRIDE:Q9XI19
            EnsemblPlants:AT1G21600.1 EnsemblPlants:AT1G21600.2 GeneID:838761
            KEGG:ath:AT1G21600 TAIR:At1g21600 eggNOG:NOG250835
            HOGENOM:HOG000005688 InParanoid:Q9XI19 OMA:TEPPIDA PhylomeDB:Q9XI19
            ProtClustDB:CLSN2687897 ArrayExpress:Q9XI19 Genevestigator:Q9XI19
            Uniprot:Q9XI19
        Length = 328

 Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
 Identities = 207/259 (79%), Positives = 229/259 (88%)

Query:     1 MDEDEMEELDNKKDYDVEYDPLVA-------GGDEDITMVDSKSFVYTQGWDSETVVDYR 53
             MD++E+EE+DNKKDYDVEYDPL A       GGD DI  V SKSF+ TQGWDS+ VVDYR
Sbjct:    70 MDDEEVEEVDNKKDYDVEYDPLAAAIAAAGGGGDGDIAFVQSKSFISTQGWDSDMVVDYR 129

Query:    54 IDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRC 113
             I+EDEFHK+SLM+CDFFIRKPPDPDNDVYDFREMYVTPPDTDIY+IP+VLAPMPQKYIRC
Sbjct:   130 INEDEFHKLSLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRC 189

Query:   114 AVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDS 173
             A+SDYGCYNVTEPPIDAPRDP+YKSEREI KVFL KHYRNRR  DPEFVLD EEIYVIDS
Sbjct:   190 AMSDYGCYNVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRTNDPEFVLDLEEIYVIDS 249

Query:   174 KTKSITRAKVLVTLP--RNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTR 231
             KTKSITRA+VLVT+P  R RDRK DLL++RDNG SFKIIH   ++D TTVIE+EEW KTR
Sbjct:   250 KTKSITRARVLVTVPGGRKRDRKDDLLVIRDNGTSFKIIHVGERDDPTTVIEREEWTKTR 309

Query:   232 ADMERHLRKLRDFNVSNWF 250
              DME+HLRKLRDF+VSNWF
Sbjct:   310 EDMEKHLRKLRDFSVSNWF 328


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.138   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      250       250   0.00080  114 3  11 22  0.46    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  209 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.72u 0.14s 23.86t   Elapsed:  00:00:01
  Total cpu time:  23.72u 0.14s 23.86t   Elapsed:  00:00:01
  Start:  Fri May 10 19:23:01 2013   End:  Fri May 10 19:23:02 2013

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