Query 025638
Match_columns 250
No_of_seqs 63 out of 65
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 07:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14817 HAUS5: HAUS augmin-li 98.9 9.1E-09 2E-13 103.9 11.5 116 134-249 307-426 (632)
2 PF02845 CUE: CUE domain; Int 98.3 7.4E-07 1.6E-11 60.1 4.3 38 43-80 4-41 (42)
3 smart00546 CUE Domain that may 98.3 1.1E-06 2.4E-11 59.3 4.3 38 42-79 4-41 (43)
4 PF03474 DMA: DMRTA motif; In 97.4 0.00028 6E-09 48.4 4.1 35 43-77 4-38 (39)
5 COG3074 Uncharacterized protei 97.0 0.0096 2.1E-07 46.1 9.5 67 162-238 4-72 (79)
6 PRK15422 septal ring assembly 96.4 0.043 9.3E-07 42.9 9.6 67 162-238 4-72 (79)
7 PF00627 UBA: UBA/TS-N domain; 95.7 0.019 4.1E-07 37.6 4.0 34 42-77 4-37 (37)
8 PF09744 Jnk-SapK_ap_N: JNK_SA 94.3 0.97 2.1E-05 39.1 11.5 81 161-244 32-116 (158)
9 PF06005 DUF904: Protein of un 93.9 0.81 1.8E-05 34.9 9.3 60 162-238 4-65 (72)
10 PF15619 Lebercilin: Ciliary p 93.5 0.56 1.2E-05 41.6 8.9 61 179-239 17-88 (194)
11 smart00165 UBA Ubiquitin assoc 92.6 0.24 5.1E-06 31.8 4.0 33 43-77 4-36 (37)
12 PF02403 Seryl_tRNA_N: Seryl-t 92.6 1.9 4E-05 33.8 9.8 87 164-250 11-105 (108)
13 cd00194 UBA Ubiquitin Associat 92.4 0.28 6.1E-06 31.6 4.1 34 43-78 4-37 (38)
14 PRK09413 IS2 repressor TnpA; R 88.9 0.68 1.5E-05 37.3 4.3 32 179-210 76-107 (121)
15 PRK10884 SH3 domain-containing 87.2 5.2 0.00011 35.9 9.2 66 179-246 98-166 (206)
16 PF15058 Speriolin_N: Sperioli 86.7 0.63 1.4E-05 42.0 3.1 22 181-203 19-40 (200)
17 PF04111 APG6: Autophagy prote 84.3 23 0.00049 33.5 12.3 91 152-242 40-136 (314)
18 TIGR03752 conj_TIGR03752 integ 84.1 9.9 0.00021 38.4 10.3 59 179-237 78-141 (472)
19 PF10226 DUF2216: Uncharacteri 83.4 5.7 0.00012 35.9 7.6 62 182-244 56-126 (195)
20 PRK13182 racA polar chromosome 82.8 18 0.00039 31.8 10.3 95 136-233 42-146 (175)
21 PHA02047 phage lambda Rz1-like 81.1 5 0.00011 32.8 5.8 38 201-241 26-63 (101)
22 PF05010 TACC: Transforming ac 80.7 30 0.00065 31.3 11.2 88 161-248 43-140 (207)
23 PF10205 KLRAQ: Predicted coil 80.4 14 0.0003 30.3 8.1 52 189-243 6-57 (102)
24 TIGR03495 phage_LysB phage lys 80.2 20 0.00043 30.6 9.3 67 179-246 28-95 (135)
25 PF14555 UBA_4: UBA-like domai 80.2 2.8 6E-05 28.3 3.5 36 43-79 3-38 (43)
26 PF13747 DUF4164: Domain of un 79.9 27 0.00059 27.4 11.5 83 150-237 3-85 (89)
27 KOG4588 Predicted ubiquitin-co 79.9 1.7 3.8E-05 40.5 3.1 32 50-81 1-32 (267)
28 KOG4005 Transcription factor X 79.6 13 0.00028 35.1 8.7 50 179-228 95-148 (292)
29 TIGR03752 conj_TIGR03752 integ 79.5 22 0.00048 36.0 10.9 63 179-241 71-138 (472)
30 COG4797 Predicted regulatory d 78.7 1.4 3.1E-05 41.3 2.2 24 47-70 4-28 (268)
31 PF15058 Speriolin_N: Sperioli 77.8 5.7 0.00012 36.0 5.6 37 183-230 7-43 (200)
32 PRK11637 AmiB activator; Provi 76.8 74 0.0016 30.7 13.8 10 147-156 145-154 (428)
33 PF10828 DUF2570: Protein of u 75.9 36 0.00079 27.3 9.3 63 179-244 30-92 (110)
34 KOG0971 Microtubule-associated 75.5 49 0.0011 36.6 12.5 61 179-239 330-430 (1243)
35 PF10473 CENP-F_leu_zip: Leuci 73.7 17 0.00038 31.0 7.3 61 179-249 50-110 (140)
36 PF13851 GAS: Growth-arrest sp 73.3 26 0.00057 31.0 8.7 60 179-245 53-112 (201)
37 PF10234 Cluap1: Clusterin-ass 73.3 28 0.0006 32.8 9.1 98 134-239 131-249 (267)
38 PF07058 Myosin_HC-like: Myosi 73.1 17 0.00038 35.2 7.9 55 179-238 5-71 (351)
39 PF11180 DUF2968: Protein of u 72.8 74 0.0016 28.8 13.0 47 204-250 146-192 (192)
40 PLN02678 seryl-tRNA synthetase 71.1 42 0.00091 33.5 10.4 72 179-250 38-109 (448)
41 KOG1853 LIS1-interacting prote 70.7 35 0.00076 32.6 9.2 67 179-245 50-124 (333)
42 COG3206 GumC Uncharacterized p 70.2 70 0.0015 31.0 11.5 81 161-241 319-402 (458)
43 PRK05431 seryl-tRNA synthetase 70.1 28 0.00061 34.1 8.8 72 179-250 33-104 (425)
44 KOG0995 Centromere-associated 69.2 41 0.00089 35.0 10.0 60 179-238 299-358 (581)
45 PRK09039 hypothetical protein; 69.1 1.1E+02 0.0024 29.3 12.4 93 151-246 109-214 (343)
46 PF11932 DUF3450: Protein of u 68.0 91 0.002 28.0 11.6 48 179-226 54-101 (251)
47 PRK13922 rod shape-determining 67.6 83 0.0018 28.4 10.8 38 192-229 73-110 (276)
48 PF02954 HTH_8: Bacterial regu 67.6 4.2 9E-05 27.2 1.8 25 54-78 5-29 (42)
49 PF06156 DUF972: Protein of un 67.2 29 0.00063 28.2 7.0 26 179-204 20-45 (107)
50 PRK03918 chromosome segregatio 66.9 1.5E+02 0.0032 30.9 13.6 31 143-173 150-180 (880)
51 PF05300 DUF737: Protein of un 66.5 35 0.00076 30.5 7.9 27 213-242 138-164 (187)
52 PRK02224 chromosome segregatio 64.7 1.7E+02 0.0036 30.6 13.6 60 179-238 211-270 (880)
53 CHL00098 tsf elongation factor 64.6 5.1 0.00011 35.9 2.3 41 44-85 5-45 (200)
54 TIGR00414 serS seryl-tRNA synt 64.0 43 0.00094 32.7 8.8 68 182-250 38-107 (418)
55 KOG4196 bZIP transcription fac 63.3 85 0.0018 27.0 9.3 66 179-245 45-114 (135)
56 TIGR00116 tsf translation elon 62.3 5.7 0.00012 37.5 2.3 28 58-85 21-48 (290)
57 PF10506 MCC-bdg_PDZ: PDZ doma 61.5 69 0.0015 24.3 7.9 56 185-241 2-61 (67)
58 PRK09377 tsf elongation factor 60.3 6.5 0.00014 37.1 2.3 29 57-85 21-49 (290)
59 PRK12332 tsf elongation factor 60.2 6.8 0.00015 35.0 2.3 42 43-85 7-48 (198)
60 KOG0804 Cytoplasmic Zn-finger 60.2 97 0.0021 31.6 10.4 51 160-210 369-425 (493)
61 PRK13169 DNA replication intia 60.0 48 0.001 27.3 7.0 33 179-211 20-52 (110)
62 TIGR00219 mreC rod shape-deter 60.0 25 0.00055 32.6 6.1 38 179-229 71-108 (283)
63 PRK06369 nac nascent polypepti 59.6 11 0.00023 31.5 3.2 27 53-79 88-114 (115)
64 PF09789 DUF2353: Uncharacteri 59.5 52 0.0011 31.7 8.2 29 179-207 84-112 (319)
65 PF13097 CENP-U: CENP-A nucleo 58.4 51 0.0011 29.4 7.4 42 162-203 108-157 (175)
66 KOG4343 bZIP transcription fac 57.6 15 0.00033 38.1 4.5 48 163-210 279-331 (655)
67 PF07888 CALCOCO1: Calcium bin 56.5 89 0.0019 32.3 9.7 19 10-30 7-25 (546)
68 KOG4603 TBP-1 interacting prot 56.3 1E+02 0.0022 27.9 9.0 25 215-239 119-143 (201)
69 PF01166 TSC22: TSC-22/dip/bun 56.2 12 0.00027 28.0 2.7 27 220-246 15-41 (59)
70 TIGR01837 PHA_granule_1 poly(h 55.7 35 0.00076 27.9 5.6 11 136-146 24-34 (118)
71 TIGR00264 alpha-NAC-related pr 55.7 13 0.00029 31.0 3.1 25 54-78 91-115 (116)
72 PF07926 TPR_MLP1_2: TPR/MLP1/ 55.6 1.1E+02 0.0025 25.0 9.5 61 179-239 8-79 (132)
73 PF06005 DUF904: Protein of un 55.1 68 0.0015 24.4 6.7 23 179-201 30-52 (72)
74 TIGR02894 DNA_bind_RsfA transc 55.0 52 0.0011 29.0 6.8 39 161-201 86-124 (161)
75 PF08317 Spc7: Spc7 kinetochor 54.9 1.9E+02 0.0041 27.2 12.2 58 179-239 207-264 (325)
76 PRK11637 AmiB activator; Provi 53.5 2.2E+02 0.0047 27.5 12.1 20 219-238 233-252 (428)
77 PF07106 TBPIP: Tat binding pr 53.1 1.1E+02 0.0023 25.9 8.3 58 182-240 80-137 (169)
78 PLN02320 seryl-tRNA synthetase 53.1 1.1E+02 0.0024 31.2 9.7 68 182-250 101-168 (502)
79 PF09744 Jnk-SapK_ap_N: JNK_SA 53.0 74 0.0016 27.6 7.4 60 179-238 87-147 (158)
80 PF07334 IFP_35_N: Interferon- 52.6 24 0.00052 27.5 3.9 28 179-206 5-32 (76)
81 PRK14872 rod shape-determining 52.6 34 0.00073 33.2 5.8 39 179-231 62-100 (337)
82 PF12325 TMF_TATA_bd: TATA ele 51.6 1.4E+02 0.003 24.8 11.4 14 187-200 50-63 (120)
83 TIGR02449 conserved hypothetic 51.6 51 0.0011 25.0 5.4 23 179-201 19-41 (65)
84 TIGR00219 mreC rod shape-deter 51.4 80 0.0017 29.4 7.9 29 179-207 78-110 (283)
85 PRK13922 rod shape-determining 51.3 1.1E+02 0.0024 27.6 8.7 22 179-200 74-95 (276)
86 TIGR01834 PHA_synth_III_E poly 51.0 2.4E+02 0.0052 27.3 13.2 100 136-242 206-319 (320)
87 smart00804 TAP_C C-terminal do 50.1 22 0.00049 26.4 3.3 33 50-82 21-53 (63)
88 KOG0250 DNA repair protein RAD 49.7 2.4E+02 0.0052 31.7 12.0 59 179-241 406-465 (1074)
89 PF06364 DUF1068: Protein of u 49.4 86 0.0019 28.1 7.3 41 189-234 85-125 (176)
90 PF13851 GAS: Growth-arrest sp 49.3 1.9E+02 0.0041 25.6 11.7 60 179-238 67-126 (201)
91 PRK11091 aerobic respiration c 48.8 3E+02 0.0065 28.0 12.1 58 139-203 68-125 (779)
92 PHA02562 46 endonuclease subun 48.7 2.4E+02 0.0052 27.5 11.1 25 179-203 179-203 (562)
93 KOG3119 Basic region leucine z 48.6 65 0.0014 29.8 6.8 38 187-234 221-258 (269)
94 PF08614 ATG16: Autophagy prot 48.2 1.7E+02 0.0037 25.4 9.0 75 161-245 101-177 (194)
95 KOG3119 Basic region leucine z 47.5 60 0.0013 30.1 6.4 27 179-205 227-253 (269)
96 PF13118 DUF3972: Protein of u 47.4 1.1E+02 0.0024 26.0 7.4 38 186-226 83-120 (126)
97 KOG4083 Head-elevated expressi 47.3 34 0.00074 30.9 4.6 42 197-240 96-137 (192)
98 COG1938 Archaeal enzymes of AT 46.5 32 0.00069 32.1 4.4 62 134-196 157-226 (244)
99 PF10211 Ax_dynein_light: Axon 46.3 1.3E+02 0.0029 26.3 8.1 58 179-238 132-189 (189)
100 COG1308 EGD2 Transcription fac 46.1 22 0.00048 30.0 3.0 23 56-78 99-121 (122)
101 KOG0977 Nuclear envelope prote 46.0 34 0.00074 35.3 4.9 40 204-247 31-70 (546)
102 PF06810 Phage_GP20: Phage min 46.0 93 0.002 26.6 6.9 61 179-247 25-89 (155)
103 PF11559 ADIP: Afadin- and alp 45.7 1.7E+02 0.0037 24.1 11.8 94 153-246 43-146 (151)
104 smart00787 Spc7 Spc7 kinetocho 45.7 1.5E+02 0.0033 28.1 9.0 58 180-240 203-260 (312)
105 PF14362 DUF4407: Domain of un 45.6 1.6E+02 0.0034 27.0 8.8 14 164-177 103-116 (301)
106 COG5296 Transcription factor i 45.4 36 0.00078 34.4 4.8 51 186-244 352-402 (521)
107 KOG0989 Replication factor C, 44.7 20 0.00044 34.9 3.0 55 26-84 177-238 (346)
108 smart00338 BRLZ basic region l 44.6 1.1E+02 0.0024 21.8 6.2 21 182-202 27-47 (65)
109 KOG4571 Activating transcripti 44.4 1.2E+02 0.0027 29.1 8.0 41 182-232 249-289 (294)
110 PRK13729 conjugal transfer pil 43.5 1.2E+02 0.0026 31.0 8.2 24 182-205 77-100 (475)
111 PF12958 DUF3847: Protein of u 42.1 46 0.001 26.4 4.1 28 213-240 2-29 (86)
112 PF10046 BLOC1_2: Biogenesis o 41.1 1.8E+02 0.0038 22.9 11.5 34 211-244 51-84 (99)
113 TIGR03319 YmdA_YtgF conserved 40.5 4.1E+02 0.0089 27.0 12.8 13 153-165 27-39 (514)
114 PF05597 Phasin: Poly(hydroxya 40.5 1.9E+02 0.004 24.5 7.8 44 153-196 74-124 (132)
115 TIGR03017 EpsF chain length de 40.4 3.3E+02 0.0072 25.9 13.0 57 184-240 314-370 (444)
116 PF03943 TAP_C: TAP C-terminal 40.3 12 0.00026 26.5 0.5 31 53-83 12-42 (51)
117 KOG2264 Exostosin EXT1L [Signa 40.1 2.2E+02 0.0047 30.5 9.6 35 208-242 117-151 (907)
118 KOG2273 Membrane coat complex 40.0 3E+02 0.0065 27.1 10.3 60 179-238 354-413 (503)
119 PRK13923 putative spore coat p 39.9 2.3E+02 0.0049 25.2 8.5 77 162-238 29-144 (170)
120 PRK13729 conjugal transfer pil 39.2 71 0.0015 32.5 5.9 24 179-202 81-104 (475)
121 cd07429 Cby_like Chibby, a nuc 38.9 37 0.00081 28.0 3.3 19 179-197 84-102 (108)
122 TIGR01069 mutS2 MutS2 family p 38.8 4.8E+02 0.01 27.9 12.1 6 159-164 501-506 (771)
123 PRK15354 type III secretion sy 38.5 3.3E+02 0.0072 25.3 10.2 37 134-170 20-64 (224)
124 PF07139 DUF1387: Protein of u 38.2 3E+02 0.0065 26.6 9.6 57 166-225 154-213 (302)
125 PF11577 NEMO: NF-kappa-B esse 38.1 1.8E+02 0.0039 22.1 8.1 21 186-206 4-24 (68)
126 TIGR02894 DNA_bind_RsfA transc 38.1 2.1E+02 0.0045 25.3 7.9 8 163-170 29-36 (161)
127 KOG1071 Mitochondrial translat 38.0 25 0.00054 34.2 2.4 40 41-81 47-86 (340)
128 PF09006 Surfac_D-trimer: Lung 37.7 72 0.0016 22.9 4.1 22 185-206 3-24 (46)
129 PF15619 Lebercilin: Ciliary p 37.6 2.5E+02 0.0053 25.0 8.5 48 179-229 66-113 (194)
130 TIGR01005 eps_transp_fam exopo 37.4 4.9E+02 0.011 27.0 11.8 57 184-240 348-404 (754)
131 PF07888 CALCOCO1: Calcium bin 36.5 2.5E+02 0.0053 29.2 9.3 64 179-242 155-229 (546)
132 PF06818 Fez1: Fez1; InterPro 36.3 2.4E+02 0.0053 25.7 8.3 64 182-245 32-99 (202)
133 PF11932 DUF3450: Protein of u 36.1 1.5E+02 0.0033 26.5 7.1 52 179-240 47-98 (251)
134 COG4467 Regulator of replicati 36.1 45 0.00098 27.9 3.3 35 179-213 20-54 (114)
135 PF02841 GBP_C: Guanylate-bind 35.1 3.6E+02 0.0079 24.8 9.5 24 179-202 202-225 (297)
136 PF01166 TSC22: TSC-22/dip/bun 35.0 67 0.0014 24.1 3.8 20 179-198 12-31 (59)
137 PF07989 Microtub_assoc: Micro 34.6 2.1E+02 0.0045 21.9 8.4 25 216-240 47-71 (75)
138 COG0264 Tsf Translation elonga 34.5 30 0.00064 33.2 2.3 27 59-85 23-49 (296)
139 KOG0612 Rho-associated, coiled 34.4 4.1E+02 0.009 30.5 11.1 66 179-245 463-534 (1317)
140 PF03961 DUF342: Protein of un 34.3 3E+02 0.0066 26.9 9.3 25 214-238 384-408 (451)
141 PF03961 DUF342: Protein of un 34.3 2.8E+02 0.006 27.1 9.0 30 212-241 375-404 (451)
142 TIGR03007 pepcterm_ChnLen poly 33.9 2.9E+02 0.0064 26.8 9.1 59 182-240 325-383 (498)
143 PF14645 Chibby: Chibby family 33.9 48 0.001 27.3 3.2 26 179-204 69-94 (116)
144 COG1792 MreC Cell shape-determ 33.8 1.1E+02 0.0024 28.6 5.9 39 192-230 70-108 (284)
145 PF11336 DUF3138: Protein of u 33.7 68 0.0015 32.7 4.7 63 179-241 23-105 (514)
146 PHA02047 phage lambda Rz1-like 33.5 1.8E+02 0.0038 24.0 6.3 48 179-232 32-79 (101)
147 PF10018 Med4: Vitamin-D-recep 33.5 1.9E+02 0.0042 25.0 7.1 51 189-239 3-56 (188)
148 TIGR01541 tape_meas_lam_C phag 33.4 4.4E+02 0.0096 25.3 11.6 12 227-238 91-102 (332)
149 PF09311 Rab5-bind: Rabaptin-l 33.4 31 0.00068 29.9 2.2 60 179-238 20-83 (181)
150 PF15463 ECM11: Extracellular 33.3 1.5E+02 0.0033 24.6 6.2 61 134-195 69-133 (139)
151 KOG2129 Uncharacterized conser 33.2 1.8E+02 0.0039 29.8 7.6 14 220-233 144-157 (552)
152 COG2433 Uncharacterized conser 32.7 6.3E+02 0.014 27.0 11.5 24 202-225 464-487 (652)
153 smart00338 BRLZ basic region l 32.6 1.3E+02 0.0027 21.6 4.9 32 215-246 29-60 (65)
154 PF06320 GCN5L1: GCN5-like pro 32.6 2.9E+02 0.0062 22.8 8.5 62 155-216 22-89 (121)
155 PF04803 Cor1: Cor1/Xlr/Xmr co 32.3 1.9E+02 0.0042 24.3 6.6 28 217-244 87-114 (130)
156 cd00179 SynN Syntaxin N-termin 32.0 2.7E+02 0.0058 22.3 10.4 61 140-211 25-93 (151)
157 PRK11677 hypothetical protein; 31.9 70 0.0015 27.2 3.9 19 217-235 34-52 (134)
158 PRK09458 pspB phage shock prot 31.8 88 0.0019 24.4 4.1 25 216-240 39-63 (75)
159 COG4026 Uncharacterized protei 31.4 3.4E+02 0.0073 25.8 8.5 64 179-245 133-196 (290)
160 PF08614 ATG16: Autophagy prot 31.4 1E+02 0.0022 26.7 5.0 61 179-242 107-167 (194)
161 KOG1937 Uncharacterized conser 31.3 1.7E+02 0.0036 30.2 7.0 46 191-236 465-519 (521)
162 PF09730 BicD: Microtubule-ass 31.3 1.3E+02 0.0028 32.1 6.6 60 180-239 537-610 (717)
163 TIGR02977 phageshock_pspA phag 31.1 3.7E+02 0.0081 23.7 13.7 104 134-241 23-128 (219)
164 PRK09039 hypothetical protein; 31.1 4.8E+02 0.01 25.0 11.6 14 34-50 13-26 (343)
165 TIGR02976 phageshock_pspB phag 30.0 99 0.0021 23.9 4.1 25 216-240 39-63 (75)
166 PF10267 Tmemb_cc2: Predicted 29.9 4.5E+02 0.0096 26.2 9.6 39 198-242 47-85 (395)
167 PF07544 Med9: RNA polymerase 29.8 93 0.002 23.9 4.0 54 179-235 26-82 (83)
168 PF12781 AAA_9: ATP-binding dy 29.7 96 0.0021 27.9 4.7 39 197-241 157-195 (228)
169 PF09726 Macoilin: Transmembra 28.9 4.4E+02 0.0096 28.0 9.9 31 216-246 549-579 (697)
170 PF14197 Cep57_CLD_2: Centroso 28.8 2.6E+02 0.0055 21.1 7.7 23 179-201 3-25 (69)
171 PF09738 DUF2051: Double stran 28.7 5.3E+02 0.011 24.7 12.4 79 157-238 83-166 (302)
172 KOG0976 Rho/Rac1-interacting s 28.6 5.9E+02 0.013 28.5 10.7 85 162-246 298-406 (1265)
173 COG5281 Phage-related minor ta 28.6 3.8E+02 0.0082 29.4 9.4 33 203-238 528-560 (833)
174 PF05911 DUF869: Plant protein 28.5 5.9E+02 0.013 27.6 10.8 66 179-247 90-155 (769)
175 COG2433 Uncharacterized conser 28.3 7.6E+02 0.016 26.4 11.7 17 179-195 448-464 (652)
176 KOG4077 Cytochrome c oxidase, 28.2 58 0.0012 28.4 2.8 27 55-81 83-111 (149)
177 PF11488 Lge1: Transcriptional 28.1 1.6E+02 0.0034 22.4 5.0 42 207-248 25-66 (80)
178 PF04977 DivIC: Septum formati 27.9 2.2E+02 0.0048 20.3 5.6 25 214-238 26-50 (80)
179 COG5185 HEC1 Protein involved 27.7 4.4E+02 0.0095 27.6 9.3 86 145-230 291-386 (622)
180 TIGR01730 RND_mfp RND family e 27.4 3.3E+02 0.0072 24.0 7.7 18 221-238 111-128 (322)
181 PLN03025 replication factor C 27.3 68 0.0015 29.4 3.4 50 26-79 147-203 (319)
182 PF13863 DUF4200: Domain of un 27.0 3.1E+02 0.0068 21.5 8.8 37 203-239 72-108 (126)
183 PF10212 TTKRSYEDQ: Predicted 26.9 7E+02 0.015 25.9 10.6 20 179-198 439-458 (518)
184 KOG4571 Activating transcripti 26.9 2.1E+02 0.0047 27.5 6.6 32 179-210 260-292 (294)
185 KOG4552 Vitamin-D-receptor int 26.6 3.4E+02 0.0074 25.5 7.7 14 227-240 89-102 (272)
186 PRK10803 tol-pal system protei 26.3 4.6E+02 0.01 24.0 8.6 38 179-219 66-103 (263)
187 PF10241 KxDL: Uncharacterized 26.2 2.8E+02 0.006 21.5 6.1 19 221-239 59-77 (88)
188 PF01486 K-box: K-box region; 26.2 2E+02 0.0043 22.3 5.3 26 179-204 73-98 (100)
189 COG4567 Response regulator con 26.1 59 0.0013 29.1 2.6 25 57-81 145-169 (182)
190 PF03980 Nnf1: Nnf1 ; InterPr 26.1 2.2E+02 0.0048 22.3 5.7 37 171-207 70-106 (109)
191 PF09006 Surfac_D-trimer: Lung 26.0 1.1E+02 0.0023 22.0 3.4 18 215-232 9-26 (46)
192 PRK04863 mukB cell division pr 25.9 9.3E+02 0.02 28.1 12.3 87 153-239 353-455 (1486)
193 PRK10920 putative uroporphyrin 25.7 4.3E+02 0.0094 26.1 8.7 18 179-196 65-82 (390)
194 PF11236 DUF3037: Protein of u 25.7 66 0.0014 26.1 2.7 23 45-67 39-61 (118)
195 PF02268 TFIIA_gamma_N: Transc 25.7 66 0.0014 23.1 2.4 27 145-173 20-46 (49)
196 PF08679 DsrD: Dissimilatory s 25.7 73 0.0016 24.5 2.7 24 44-67 22-45 (67)
197 PF03962 Mnd1: Mnd1 family; I 25.7 4.6E+02 0.01 23.0 8.6 24 182-205 104-127 (188)
198 PF15070 GOLGA2L5: Putative go 25.5 8E+02 0.017 25.7 11.8 24 179-202 20-43 (617)
199 PHA02562 46 endonuclease subun 25.4 6.5E+02 0.014 24.6 11.1 53 153-205 260-323 (562)
200 PRK09841 cryptic autophosphory 25.2 5.7E+02 0.012 26.7 9.9 56 183-238 341-396 (726)
201 PF06667 PspB: Phage shock pro 25.2 1.4E+02 0.0029 23.2 4.1 24 217-240 40-63 (75)
202 PF08172 CASP_C: CASP C termin 25.2 1.9E+02 0.0042 26.7 5.9 28 216-243 97-124 (248)
203 PF07412 Geminin: Geminin; In 25.2 2.2E+02 0.0048 25.9 6.1 43 181-230 125-167 (200)
204 PF07716 bZIP_2: Basic region 25.1 2.4E+02 0.0052 19.6 6.1 25 215-239 28-52 (54)
205 PF00517 GP41: Retroviral enve 25.0 3.7E+02 0.0079 23.9 7.4 42 199-240 15-60 (204)
206 KOG0241 Kinesin-like protein [ 24.7 1.8E+02 0.0038 33.0 6.2 59 185-249 368-427 (1714)
207 PF05769 DUF837: Protein of un 24.7 2.7E+02 0.0059 24.5 6.5 42 188-242 70-111 (181)
208 COG1842 PspA Phage shock prote 24.7 5.4E+02 0.012 23.5 10.5 50 184-236 27-76 (225)
209 PRK10328 DNA binding protein, 24.6 2.8E+02 0.006 23.5 6.3 32 206-237 36-67 (134)
210 COG4942 Membrane-bound metallo 24.6 7.4E+02 0.016 25.0 12.8 65 158-223 146-210 (420)
211 PF13870 DUF4201: Domain of un 24.5 4.3E+02 0.0094 22.3 9.3 31 211-241 144-174 (177)
212 PF03962 Mnd1: Mnd1 family; I 24.5 3.6E+02 0.0078 23.7 7.2 20 179-198 108-127 (188)
213 PF07445 priB_priC: Primosomal 24.4 77 0.0017 27.5 3.0 50 190-239 72-122 (173)
214 KOG0161 Myosin class II heavy 24.4 1.3E+03 0.028 27.9 13.2 83 134-216 1357-1442(1930)
215 KOG4643 Uncharacterized coiled 24.4 7.4E+02 0.016 28.2 10.7 34 192-225 461-494 (1195)
216 PF06120 Phage_HK97_TLTM: Tail 24.3 5E+02 0.011 25.0 8.6 85 137-223 58-162 (301)
217 PF06295 DUF1043: Protein of u 24.2 1.3E+02 0.0028 24.8 4.2 27 211-237 24-50 (128)
218 PF12805 FUSC-like: FUSC-like 24.2 2.6E+02 0.0057 25.4 6.6 73 162-234 180-258 (284)
219 PF12999 PRKCSH-like: Glucosid 24.2 5.2E+02 0.011 23.1 8.5 12 227-238 161-172 (176)
220 KOG3647 Predicted coiled-coil 24.2 6.7E+02 0.015 24.4 9.4 88 134-223 74-179 (338)
221 PF05384 DegS: Sensor protein 23.8 1.8E+02 0.0039 25.3 5.1 41 204-244 19-59 (159)
222 PF14193 DUF4315: Domain of un 23.7 1.7E+02 0.0036 23.0 4.5 21 219-239 8-28 (83)
223 PF09670 Cas_Cas02710: CRISPR- 23.6 4.7E+02 0.01 25.2 8.4 92 149-249 253-356 (379)
224 PF12718 Tropomyosin_1: Tropom 23.6 4.5E+02 0.0097 22.1 10.7 59 179-237 40-98 (143)
225 PRK14127 cell division protein 23.4 1.6E+02 0.0035 24.2 4.5 24 216-239 48-71 (109)
226 PRK05564 DNA polymerase III su 23.4 77 0.0017 29.0 3.0 50 26-79 141-193 (313)
227 PRK14127 cell division protein 23.3 1E+02 0.0022 25.3 3.4 19 179-197 42-60 (109)
228 PF14775 NYD-SP28_assoc: Sperm 23.0 3.1E+02 0.0067 20.1 5.8 17 215-231 43-59 (60)
229 PF10186 Atg14: UV radiation r 22.9 5.3E+02 0.011 22.7 12.8 27 179-205 82-108 (302)
230 PRK06975 bifunctional uroporph 22.9 5.8E+02 0.013 26.6 9.4 63 179-241 344-407 (656)
231 PF05546 She9_MDM33: She9 / Md 22.9 6E+02 0.013 23.3 11.0 81 151-233 46-139 (207)
232 PF15372 DUF4600: Domain of un 22.7 2.1E+02 0.0045 24.5 5.1 60 179-247 20-81 (129)
233 PF09397 Ftsk_gamma: Ftsk gamm 22.6 69 0.0015 24.0 2.0 13 158-170 35-47 (65)
234 PF07200 Mod_r: Modifier of ru 22.6 4.3E+02 0.0093 21.6 9.2 23 181-203 55-77 (150)
235 COG2959 HemX Uncharacterized e 22.5 6E+02 0.013 25.5 8.9 58 182-239 64-124 (391)
236 PRK00106 hypothetical protein; 22.4 8.8E+02 0.019 25.1 13.0 12 154-165 49-60 (535)
237 PF09728 Taxilin: Myosin-like 22.3 6.7E+02 0.015 23.7 10.8 58 179-239 242-299 (309)
238 PRK10803 tol-pal system protei 22.2 4E+02 0.0086 24.5 7.3 35 165-204 43-77 (263)
239 PF15035 Rootletin: Ciliary ro 22.1 5.5E+02 0.012 22.6 8.1 26 179-204 79-104 (182)
240 PF06548 Kinesin-related: Kine 21.9 1.9E+02 0.0041 29.6 5.5 6 227-232 147-152 (488)
241 PF10226 DUF2216: Uncharacteri 21.8 5E+02 0.011 23.7 7.6 63 179-242 67-131 (195)
242 PF09726 Macoilin: Transmembra 21.3 1.6E+02 0.0034 31.2 5.0 9 207-215 435-443 (697)
243 PRK00409 recombination and DNA 21.2 1E+03 0.022 25.4 12.0 6 51-56 417-422 (782)
244 PRK00888 ftsB cell division pr 20.9 3.3E+02 0.0071 21.8 5.8 23 179-201 32-54 (105)
245 PF15327 Tankyrase_bdg_C: Tank 20.8 66 0.0014 28.8 1.9 20 48-67 101-120 (177)
246 PF15070 GOLGA2L5: Putative go 20.7 4.7E+02 0.01 27.4 8.3 42 179-220 92-133 (617)
247 KOG4797 Transcriptional regula 20.6 1.4E+02 0.0029 25.3 3.5 26 179-204 65-97 (123)
248 PF15112 DUF4559: Domain of un 20.5 7.9E+02 0.017 23.9 10.5 91 141-232 173-291 (307)
249 PF09321 DUF1978: Domain of un 20.5 1.4E+02 0.003 28.0 4.0 36 44-79 122-161 (241)
250 TIGR02791 VirB5 P-type DNA tra 20.5 1.8E+02 0.0038 25.9 4.6 26 214-239 43-68 (220)
251 smart00843 Ftsk_gamma This dom 20.5 76 0.0017 23.8 1.9 13 158-170 34-46 (63)
252 KOG4343 bZIP transcription fac 20.4 2.7E+02 0.0058 29.4 6.3 45 157-201 297-343 (655)
253 PRK10884 SH3 domain-containing 20.3 6.4E+02 0.014 22.7 9.2 24 179-202 123-146 (206)
254 PF11180 DUF2968: Protein of u 20.3 5.9E+02 0.013 23.2 7.8 26 217-242 152-177 (192)
255 PF06637 PV-1: PV-1 protein (P 20.2 9E+02 0.019 24.6 9.6 56 164-225 319-376 (442)
256 PF14915 CCDC144C: CCDC144C pr 20.2 7.9E+02 0.017 23.9 9.0 24 223-246 53-76 (305)
257 KOG2561 Adaptor protein NUB1, 20.2 2.9E+02 0.0063 28.6 6.4 37 41-79 430-466 (568)
258 PF05911 DUF869: Plant protein 20.0 9.6E+02 0.021 26.0 10.4 64 161-227 112-177 (769)
No 1
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=98.91 E-value=9.1e-09 Score=103.93 Aligned_cols=116 Identities=25% Similarity=0.212 Sum_probs=101.6
Q ss_pred CChhhhHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHhhhhh-h--hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 025638 134 TDGSKWVDLFVHEMMSAA-DLDDARGRAARILEVFERSIITNSKA-S--KELEHASLKEHLQSLLNDNQILKKAVSIQHE 209 (250)
Q Consensus 134 ~~g~eWVEl~V~EM~sAs-d~dDARaRAsRvLEafEksi~~rs~a-a--~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~ 209 (250)
-.|-.+|.-||.|.+..- ...+...|..+.++..|+.+...+.. + +..|..++|..++.|..+...|+++++.+++
T Consensus 307 qe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e 386 (632)
T PF14817_consen 307 QEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSEREALALELEVAGLKASLNALRSECQRLKEAAAERQE 386 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777666665544 47888889999999999997766544 3 7789999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccC
Q 025638 210 RHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLILTLLG 249 (250)
Q Consensus 210 R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~hl 249 (250)
...++..+.|+++++++++.+||+|||+|..+||++..||
T Consensus 387 ~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L 426 (632)
T PF14817_consen 387 ALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQL 426 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999886
No 2
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=98.33 E-value=7.4e-07 Score=60.09 Aligned_cols=38 Identities=42% Similarity=0.655 Sum_probs=34.6
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 025638 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (250)
Q Consensus 43 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (250)
.|..|+.+||++++..|+.+|+++++|+|.||..|.++
T Consensus 4 ~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 4 MVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 47899999999999999999999999999999999764
No 3
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=98.28 E-value=1.1e-06 Score=59.32 Aligned_cols=38 Identities=34% Similarity=0.606 Sum_probs=35.3
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 42 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
..++.|+.+||++++..++.+|+++++|+|.||..|.+
T Consensus 4 ~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35889999999999999999999999999999999864
No 4
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=97.37 E-value=0.00028 Score=48.42 Aligned_cols=35 Identities=23% Similarity=0.559 Sum_probs=32.8
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHH
Q 025638 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (250)
Q Consensus 43 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 77 (250)
+++-|..+||+..+.+||.+|+.||.|+-.||+-+
T Consensus 4 pidiL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 4 PIDILTRVFPHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred HHHHHHHHCCCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 38999999999999999999999999999999864
No 5
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.0096 Score=46.06 Aligned_cols=67 Identities=31% Similarity=0.400 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 162 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 162 RvLEafEksi~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
-|||-+|.-|.+..-. + +|.|...|||.-..|..|-. ..||.| |...+|-+|||+--..+||.||+|
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q------~~q~~r----eaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ------NAQHQR----EALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666665555 3 99999999998877776643 346777 889999999999999999999997
No 6
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.43 E-value=0.043 Score=42.94 Aligned_cols=67 Identities=28% Similarity=0.361 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 162 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 162 RvLEafEksi~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
-+|+-+|.=|-+..-. + ++.|...||++-..|..++.-+ .+.| ++..+|.++||+--..+|+.||+|
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~------~~~r----~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA------QHQR----EELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677667665555 3 9999999999999888887754 3555 778899999999999999999987
No 7
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=95.70 E-value=0.019 Score=37.56 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=29.8
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHH
Q 025638 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (250)
Q Consensus 42 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 77 (250)
..|..|..+ +.++....+||..||||++.||.-|
T Consensus 4 ~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 4 EKVQQLMEM--GFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 357889999 9999999999999999999999865
No 8
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=94.26 E-value=0.97 Score=39.12 Aligned_cols=81 Identities=30% Similarity=0.332 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 025638 161 ARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHE-RHLEQE-QKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 161 sRvLEafEksi~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~-R~~e~e-~~~~E~~~lkq~v~qYqeqir~L 238 (250)
=+|||.+|..+..+-.. .-|...|++..+.|..+..- ++...-|-+ +..+++ .-.+|.+.|...|.+.|++.|.|
T Consensus 32 V~vLE~Le~~~~~n~~~--~~e~~~L~~d~e~L~~q~~~-ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L 108 (158)
T PF09744_consen 32 VRVLELLESLASRNQEH--EVELELLREDNEQLETQYER-EKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQL 108 (158)
T ss_pred HHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999888876644 33455666666666655543 333333333 333333 46778888888999999999999
Q ss_pred H--hhhhh
Q 025638 239 E--VIFLI 244 (250)
Q Consensus 239 E--~~NYa 244 (250)
+ ..||+
T Consensus 109 ~~~~~~~~ 116 (158)
T PF09744_consen 109 ELKLKNLS 116 (158)
T ss_pred HHHhhhhh
Confidence 9 44554
No 9
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.94 E-value=0.81 Score=34.88 Aligned_cols=60 Identities=32% Similarity=0.431 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 162 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 162 RvLEafEksi~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
.+|+-+|.=|.+..-. + ++.|+..||++...|..+|.-|+ +|.++||+--.++++.|+.|
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~-----------------~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELK-----------------EENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 3566777777665555 3 88888888888777775555444 44555555555566666554
No 10
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.48 E-value=0.56 Score=41.58 Aligned_cols=61 Identities=33% Similarity=0.384 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEK-----------EVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~-----------E~~~lkq~v~qYqeqir~LE 239 (250)
++-+...|...++.+..||.+||+.=.-|-.....|++-+. |+..|+..+-.||++.+++|
T Consensus 17 L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~ 88 (194)
T PF15619_consen 17 LQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELE 88 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999976666656666665444 44455555555555555554
No 11
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=92.64 E-value=0.24 Score=31.82 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=29.0
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHH
Q 025638 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (250)
Q Consensus 43 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 77 (250)
.|.+|..+ +++++....+|..||+|++.|+.-|
T Consensus 4 ~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 4 KIDQLLEM--GFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 46778887 8889999999999999999999765
No 12
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=92.57 E-value=1.9 Score=33.76 Aligned_cols=87 Identities=22% Similarity=0.243 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhh-hhh-------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025638 164 LEVFERSIITNS-KAS-------KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQA 235 (250)
Q Consensus 164 LEafEksi~~rs-~aa-------~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqi 235 (250)
.+.|.+++..|. ... +.++...++.+++.|..+-..+-+.|+.--.-..+.++...|+..+|.-+..+.+++
T Consensus 11 ~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 11 PEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777787774 221 677888888888888888888888777655444688899999999999999999999
Q ss_pred HHHHhhhhhccccCC
Q 025638 236 RNLEVIFLILTLLGP 250 (250)
Q Consensus 236 r~LE~~NYaLs~hl~ 250 (250)
+.+|..=+.+-+.+|
T Consensus 91 ~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 91 KELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHcCC
Confidence 999998888877776
No 13
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=92.37 E-value=0.28 Score=31.56 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=29.1
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHh
Q 025638 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLR 78 (250)
Q Consensus 43 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~ 78 (250)
.|.+|..+ +.+.+.+..||..|++|++.||.-|.
T Consensus 4 ~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 4 KLEQLLEM--GFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 46777776 67799999999999999999998764
No 14
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=88.90 E-value=0.68 Score=37.31 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHER 210 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R 210 (250)
.++|+..|+.++..|..||.|||+|..|=..|
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 67889999999999999999999999885443
No 15
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.23 E-value=5.2 Score=35.87 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQH---ERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLILT 246 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh---~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs 246 (250)
+++|...||.++..+-.+.. .+.--+|. ++.+...+...|.++|++.+.+-|.+++.||..|=.+.
T Consensus 98 le~el~~l~~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWN--QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777665543 11111122 24444555777888888888888888888888876543
No 16
>PF15058 Speriolin_N: Speriolin N terminus
Probab=86.71 E-value=0.63 Score=41.97 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q 025638 181 LEHASLKEHLQSLLNDNQILKKA 203 (250)
Q Consensus 181 kEn~~LKe~l~~l~~eN~iLKrA 203 (250)
.||+.||+++ +||+||+-||||
T Consensus 19 ~ENeeLKKlV-rLirEN~eLksa 40 (200)
T PF15058_consen 19 RENEELKKLV-RLIRENHELKSA 40 (200)
T ss_pred hhhHHHHHHH-HHHHHHHHHHHH
Confidence 4777777776 577777777777
No 17
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.26 E-value=23 Score=33.49 Aligned_cols=91 Identities=20% Similarity=0.115 Sum_probs=48.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHhhhhHHHHHHHHHHHH
Q 025638 152 DLDDARGRAARILEVFERSIITNSKA--SKELEHASLKEHLQSLLNDNQILK----KAVSIQHERHLEQEQKEKEVELLK 225 (250)
Q Consensus 152 d~dDARaRAsRvLEafEksi~~rs~a--a~~kEn~~LKe~l~~l~~eN~iLK----rAv~iQh~R~~e~e~~~~E~~~lk 225 (250)
+.+........-|+.+|+-...-... .+++|...|.+++..+..+-.-|+ +-....+.-+.++-+...|++.++
T Consensus 40 ~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~ 119 (314)
T PF04111_consen 40 DSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLK 119 (314)
T ss_dssp --HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444333333 155555555555555555544443 233334444555567778888888
Q ss_pred HHHHHHHHHHHHHHhhh
Q 025638 226 LVISQYQDQARNLEVIF 242 (250)
Q Consensus 226 q~v~qYqeqir~LE~~N 242 (250)
..+...++|+..|+-.|
T Consensus 120 ~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 120 NQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 88888899998888655
No 18
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.10 E-value=9.9 Score=38.42 Aligned_cols=59 Identities=29% Similarity=0.242 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHH----HHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQIL----KKAV-SIQHERHLEQEQKEKEVELLKLVISQYQDQARN 237 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iL----KrAv-~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~ 237 (250)
+.+||+.||++.++|.+...-+ -.|| ..+-+-.++.+....|+++++.++.+.|.|+..
T Consensus 78 l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 78 LISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555554422211 1122 222222334444555556666666666655543
No 19
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=83.41 E-value=5.7 Score=35.87 Aligned_cols=62 Identities=27% Similarity=0.322 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhhhHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhh
Q 025638 182 EHASLKEHLQSLLNDNQILKKAVSIQH-ERHLEQEQKEKEVE--------LLKLVISQYQDQARNLEVIFLI 244 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKrAv~iQh-~R~~e~e~~~~E~~--------~lkq~v~qYqeqir~LE~~NYa 244 (250)
|+.+||+-.++|..||.=|+-.-.+.- .|||--. ..+|-| -+++-|++||.+++.||..--.
T Consensus 56 EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrk-larEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~ 126 (195)
T PF10226_consen 56 EIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRK-LAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEE 126 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHH-HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999988777664 3555433 445544 3578899999999999876433
No 20
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=82.77 E-value=18 Score=31.75 Aligned_cols=95 Identities=14% Similarity=0.195 Sum_probs=55.1
Q ss_pred hhhhHHHHHHHHhcCCCchHHHHHHHHHH---HHH---HHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHH----H
Q 025638 136 GSKWVDLFVHEMMSAADLDDARGRAARIL---EVF---ERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAV----S 205 (250)
Q Consensus 136 g~eWVEl~V~EM~sAsd~dDARaRAsRvL---Eaf---Eksi~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKrAv----~ 205 (250)
--+|++++.+...+.-.+.|-+.+..==| +.. +..+..|-. .+......+.++++.|-+.-..+-.-| .
T Consensus 42 dl~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~~t~~~R~~-lLe~~~~~l~~ri~eLe~~l~~kad~vvsYql 120 (175)
T PRK13182 42 DLQLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQNISSVDFE-QLEAQLNTITRRLDELERQLQQKADDVVSYQL 120 (175)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCCccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44899999999999999999988663111 000 001111100 033333333344444433333332222 3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 025638 206 IQHERHLEQEQKEKEVELLKLVISQYQD 233 (250)
Q Consensus 206 iQh~R~~e~e~~~~E~~~lkq~v~qYqe 233 (250)
.||.| |.|++...++.|.+.+++-.+
T Consensus 121 l~hr~--e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 121 LQHRR--EMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHhHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 57876 899999999999999999443
No 21
>PHA02047 phage lambda Rz1-like protein
Probab=81.14 E-value=5 Score=32.82 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025638 201 KKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVI 241 (250)
Q Consensus 201 KrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~ 241 (250)
.|+..|=|++-+ ....++.+++.-+.+||+||..||.+
T Consensus 26 ~r~~g~~h~~a~---~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 26 YRALGIAHEEAK---RQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777653 44557888888888888888888764
No 22
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=80.68 E-value=30 Score=31.29 Aligned_cols=88 Identities=25% Similarity=0.309 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhhhh-h-----hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHH
Q 025638 161 ARILEVFERSIITNSKA-S-----KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQK----EKEVELLKLVISQ 230 (250)
Q Consensus 161 sRvLEafEksi~~rs~a-a-----~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~----~~E~~~lkq~v~q 230 (250)
..|.+.|||.|...... . .+.+...+......+..+-.-+-++|.=-|.|..-+.+. ..-=.-||.-+..
T Consensus 43 ~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~e 122 (207)
T PF05010_consen 43 RKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEE 122 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46889999988886665 2 233444444555556666667888999888886544332 2223457889999
Q ss_pred HHHHHHHHHhhhhhcccc
Q 025638 231 YQDQARNLEVIFLILTLL 248 (250)
Q Consensus 231 Yqeqir~LE~~NYaLs~h 248 (250)
|.+.|+..|-..=+|.-|
T Consensus 123 y~~~l~~~eqry~aLK~h 140 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAH 140 (207)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999887788766
No 23
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=80.43 E-value=14 Score=30.32 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=28.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025638 189 HLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFL 243 (250)
Q Consensus 189 ~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NY 243 (250)
+-..|-.+|.|||+||.-=-.+ ......+|..-.+.+-..++.+-.|..+|-
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k---~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~ 57 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAK---NAELKEQLKEKEQALRKLEQENDSLTFRNQ 57 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677899999999732222 223333444444445555555555555543
No 24
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=80.23 E-value=20 Score=30.57 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE-QKEKEVELLKLVISQYQDQARNLEVIFLILT 246 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e-~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs 246 (250)
+..-+..++.+-..+..-|+-|.++ .++-++...++ ...+++.+...++.+.+.+|+.|-..|-.|+
T Consensus 28 ~~~a~~~~~~~~~~l~~~~~qL~~l-~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR 95 (135)
T TIGR03495 28 LERANRVLKAQQAELASKANQLIVL-LALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 5556666677777777777777665 55665544444 4778899999999999999999998887664
No 25
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=80.22 E-value=2.8 Score=28.25 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=27.5
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 43 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
+|.++..+- +.++.+-...|+.|+.||+.||..+.+
T Consensus 3 ~i~~F~~iT-g~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 3 KIAQFMSIT-GADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHH--SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 345555555 568999999999999999999988765
No 26
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=79.90 E-value=27 Score=27.40 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=66.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025638 150 AADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (250)
Q Consensus 150 Asd~dDARaRAsRvLEafEksi~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~ 229 (250)
...+++|-.|=.+.|..||++|..+-.. ..+ ...+.+.++.|-.+..-|-..+--.-.|....+..+.|+.+ -+.
T Consensus 3 ~~~le~al~rL~~aid~LE~~v~~r~~~-~~~-~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~---rL~ 77 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLEKAVDRRLER-DRK-RDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR---RLD 77 (89)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHh-hhh-hhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHH
Confidence 4568899999999999999999998777 111 25567778888888888888888888888888999999877 666
Q ss_pred HHHHHHHH
Q 025638 230 QYQDQARN 237 (250)
Q Consensus 230 qYqeqir~ 237 (250)
--.|.||.
T Consensus 78 ~a~e~Ir~ 85 (89)
T PF13747_consen 78 SAIETIRA 85 (89)
T ss_pred HHHHHHHH
Confidence 66666665
No 27
>KOG4588 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=79.85 E-value=1.7 Score=40.45 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=29.6
Q ss_pred cCCCCCHHHHHHHHhhchhhHHHHHHHHhhhc
Q 025638 50 MFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81 (250)
Q Consensus 50 lFP~md~q~le~aLe~cgndlDaAIksL~~L~ 81 (250)
|||.||-+++|-||++.=-++|.+|.-|....
T Consensus 1 Mfp~~Dye~ie~VlranlgavD~tid~llaM~ 32 (267)
T KOG4588|consen 1 MFPYDDYEDIEGVLRANLGAVDRTIDDLLAMF 32 (267)
T ss_pred CCCcchHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 79999999999999998889999999987765
No 28
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=79.64 E-value=13 Score=35.11 Aligned_cols=50 Identities=30% Similarity=0.278 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHhhhhHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKK----AVSIQHERHLEQEQKEKEVELLKLVI 228 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKr----Av~iQh~R~~e~e~~~~E~~~lkq~v 228 (250)
+..|.+.|-|+-+.|..||..|++ .++-||+--.+.+..++||-.|||.+
T Consensus 95 me~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 95 MEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 555677777777888888877754 68899999999999999999999864
No 29
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.53 E-value=22 Score=36.01 Aligned_cols=63 Identities=27% Similarity=0.218 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAV-----SIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVI 241 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv-----~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~ 241 (250)
+.+|...|..+-+.|..||.-||+-- .||..-..+..+..+|.++|+.-+.|-|.+|..|+..
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777776532 3555555566778889999999999999999888754
No 30
>COG4797 Predicted regulatory domain of a methyltransferase [General function prediction only]
Probab=78.65 E-value=1.4 Score=41.27 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=22.8
Q ss_pred HHhcCC-CCCHHHHHHHHhhchhhH
Q 025638 47 LLQMFP-DVDPEVVKSVLGEHDNKI 70 (250)
Q Consensus 47 L~~lFP-~md~q~le~aLe~cgndl 70 (250)
|..+|| -|++++.|+.+..||||+
T Consensus 4 ls~~f~~nm~~~i~E~L~A~~gdD~ 28 (268)
T COG4797 4 LSATFPGNMPEHIEEKLLAECGDDI 28 (268)
T ss_pred hhhhccccCCHHHHHHHHhhcccch
Confidence 789999 899999999999999997
No 31
>PF15058 Speriolin_N: Speriolin N terminus
Probab=77.77 E-value=5.7 Score=36.00 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 025638 183 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQ 230 (250)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~q 230 (250)
.+.|.+|+++|.+||.=||+-|.. -+|.+.||.++.+
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrL-----------irEN~eLksaL~e 43 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRL-----------IRENHELKSALGE 43 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 356889999999999999998864 3455666666544
No 32
>PRK11637 AmiB activator; Provisional
Probab=76.81 E-value=74 Score=30.71 Aligned_cols=10 Identities=10% Similarity=0.325 Sum_probs=5.1
Q ss_pred HhcCCCchHH
Q 025638 147 MMSAADLDDA 156 (250)
Q Consensus 147 M~sAsd~dDA 156 (250)
+.++.++++.
T Consensus 145 Ll~a~~~~~~ 154 (428)
T PRK11637 145 ILSGEESQRG 154 (428)
T ss_pred HhcCCChhHH
Confidence 4456665443
No 33
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=75.90 E-value=36 Score=27.25 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLI 244 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYa 244 (250)
+..||+...+.+..--.-|.-|+..+.+...-. ++..+.-+++++-..+++|+||+..-+|=.
T Consensus 30 L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~---~~~~~~~qq~r~~~e~~~e~ik~~lk~d~C 92 (110)
T PF10828_consen 30 LRAENKAQAQTIQQQEDANQELKAQLQQNRQAV---EEQQKREQQLRQQSEERRESIKTALKDDPC 92 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 555666666666555556666666555443332 334444566777899999999998776643
No 34
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.45 E-value=49 Score=36.60 Aligned_cols=61 Identities=30% Similarity=0.323 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH------------------HHHHHHhhh----------------------hHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKA------------------VSIQHERHL----------------------EQEQKE 218 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrA------------------v~iQh~R~~----------------------e~e~~~ 218 (250)
+|.|..+|||+++.|--+--|||-= +-+||.|.| |.|-++
T Consensus 330 LQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~ 409 (1243)
T KOG0971|consen 330 LQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKN 409 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 9999999999999998888888742 456777654 445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025638 219 KEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 219 ~E~~~lkq~v~qYqeqir~LE 239 (250)
.|+..|++.-...+.++-.+|
T Consensus 410 sE~~eL~r~kE~Lsr~~d~aE 430 (1243)
T KOG0971|consen 410 SELEELRRQKERLSRELDQAE 430 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 777777666555555554444
No 35
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.67 E-value=17 Score=30.99 Aligned_cols=61 Identities=26% Similarity=0.267 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccC
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLILTLLG 249 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~hl 249 (250)
-++|...|++++..+..+...|. .|......|...|.+.+.+-|++|..||..|..+.-|+
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~----------~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l 110 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLE----------LELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLL 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45566677777777776665553 34455667777778888888999999998888766543
No 36
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=73.32 E-value=26 Score=31.03 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLIL 245 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaL 245 (250)
+..||..|++-|..+..++.-|++-+.- +++ -...++.+|.-+...+++++.|+..+=.|
T Consensus 53 i~~eN~~L~epL~~a~~e~~eL~k~L~~-y~k------dK~~L~~~k~rl~~~ek~l~~Lk~e~evL 112 (201)
T PF13851_consen 53 ISQENKRLSEPLKKAEEEVEELRKQLKN-YEK------DKQSLQNLKARLKELEKELKDLKWEHEVL 112 (201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555554431 222 22345555555555555555555544433
No 37
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=73.25 E-value=28 Score=32.78 Aligned_cols=98 Identities=29% Similarity=0.385 Sum_probs=67.8
Q ss_pred CChhhhHHHHHHHHhcCCCchHHHHHHHH---HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHH----------
Q 025638 134 TDGSKWVDLFVHEMMSAADLDDARGRAAR---ILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQIL---------- 200 (250)
Q Consensus 134 ~~g~eWVEl~V~EM~sAsd~dDARaRAsR---vLEafEksi~~rs~aa~~kEn~~LKe~l~~l~~eN~iL---------- 200 (250)
..|+.--++|=+|+ ++-++|.+|.+ =+..+||+|.+.... ...+...++.++..+..+..-|
T Consensus 131 ~~GA~LydlL~kE~----~lr~~R~~a~~r~~e~~~iE~~l~~ai~~-~~~~~~~~~~~l~~l~~de~~Le~KIekkk~E 205 (267)
T PF10234_consen 131 QRGASLYDLLGKEV----ELREERQRALARPLELNEIEKALKEAIKA-VQQQLQQTQQQLNNLASDEANLEAKIEKKKQE 205 (267)
T ss_pred HHHHHHHHHHhchH----hHHHHHHHHHcCCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999998 66677777654 145588888876555 6666666777777766665443
Q ss_pred -----HHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 201 -----KKAVSIQHER---HLEQEQKEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 201 -----KrAv~iQh~R---~~e~e~~~~E~~~lkq~v~qYqeqir~LE 239 (250)
||-=..|+-| +-|||....||+. +-..|=++.|.|+
T Consensus 206 LER~qKRL~sLq~vRPAfmdEyEklE~EL~~---lY~~Y~~kfRNl~ 249 (267)
T PF10234_consen 206 LERNQKRLQSLQSVRPAFMDEYEKLEEELQK---LYEIYVEKFRNLD 249 (267)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHH---HHHHHHHHHHhHH
Confidence 4444555555 3477777777766 7778888888765
No 38
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=73.13 E-value=17 Score=35.23 Aligned_cols=55 Identities=24% Similarity=0.375 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHL--EQEQKEKEVELLKLV----------ISQYQDQARNL 238 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~--e~e~~~~E~~~lkq~----------v~qYqeqir~L 238 (250)
+|--|-.|+.|++.-..||.||-+. .||| |.|...|-++.|... |-.||-|+..|
T Consensus 5 ~QN~N~EL~kQiEIcqEENkiLdK~-----hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~el 71 (351)
T PF07058_consen 5 VQNQNQELMKQIEICQEENKILDKM-----HRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQEL 71 (351)
T ss_pred hhhhcHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4667889999999999999999885 4665 667788888888764 45688776443
No 39
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=72.79 E-value=74 Score=28.81 Aligned_cols=47 Identities=21% Similarity=0.093 Sum_probs=38.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 025638 204 VSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLILTLLGP 250 (250)
Q Consensus 204 v~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~hl~ 250 (250)
-.-||+=++|-.....|.+....-+.+-|.||+.||..+-.--.|||
T Consensus 146 a~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~~~~~lp 192 (192)
T PF11180_consen 146 AARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANEPIPSLP 192 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 34566666676777777778888899999999999999998888887
No 40
>PLN02678 seryl-tRNA synthetase
Probab=71.07 E-value=42 Score=33.51 Aligned_cols=72 Identities=15% Similarity=0.034 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLILTLLGP 250 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~hl~ 250 (250)
+.+|-..|+.+++.|..+.+.+-+.+..=..-..+.++...|+++||+-+....++++.+|..=+.+-+.+|
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iP 109 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIG 109 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333444455555555555555555443311122355677778899999999999999999888777766665
No 41
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=70.67 E-value=35 Score=32.64 Aligned_cols=67 Identities=21% Similarity=0.142 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKA-------VSIQHERHL-EQEQKEKEVELLKLVISQYQDQARNLEVIFLIL 245 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrA-------v~iQh~R~~-e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaL 245 (250)
+.-+..-++.++..|..+|+-|+-- +--||-..- .......++.|++.++.|.++.||.||..|--|
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3344455566666666666655433 333333221 122467789999999999999999999998654
No 42
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=70.19 E-value=70 Score=31.05 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 161 ARILEVFERSIITNSKA---SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARN 237 (250)
Q Consensus 161 sRvLEafEksi~~rs~a---a~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~ 237 (250)
.+-++..++.+..-... ....|...+..+.+.|..+-..+|.-+..=...+.++.+.++|++-.+++..+|-.+.+.
T Consensus 319 ~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe 398 (458)
T COG3206 319 EAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQE 398 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666655555 155577889999999999999999999999999999999999999999999999888887
Q ss_pred HHhh
Q 025638 238 LEVI 241 (250)
Q Consensus 238 LE~~ 241 (250)
+...
T Consensus 399 ~~~~ 402 (458)
T COG3206 399 LSIQ 402 (458)
T ss_pred HHHh
Confidence 7654
No 43
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=70.11 E-value=28 Score=34.06 Aligned_cols=72 Identities=24% Similarity=0.236 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLILTLLGP 250 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~hl~ 250 (250)
+.++-..|+.+++.|-.+.+.+-+.+..-.....+.++...|..+||+-+....++++.+|..-+.+-+++|
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iP 104 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIP 104 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445556666666666666666666665422222355677778888899999999999999888777776665
No 44
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.20 E-value=41 Score=34.96 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
++.|.+.--++++.|..+|.=||.-|..|.-=-.|.+.+++|+++|++-|..-+-++-.|
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRL 358 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666666788999999999999999997777899999999999998887665554443
No 45
>PRK09039 hypothetical protein; Validated
Probab=69.07 E-value=1.1e+02 Score=29.26 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=51.0
Q ss_pred CCchHHHHHHHHHHHHH--HHHHHhhhhh--h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH-
Q 025638 151 ADLDDARGRAARILEVF--ERSIITNSKA--S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELL- 224 (250)
Q Consensus 151 sd~dDARaRAsRvLEaf--Eksi~~rs~a--a-~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~l- 224 (250)
.....+..|+...=+.+ +|.+.+.+.+ . ++.|...||+|+..|-.+-..++.--.-++.+..+++. +++..
T Consensus 109 ~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~---~L~~a~ 185 (343)
T PRK09039 109 GAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR---RLNVAL 185 (343)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 33456666666654433 2333333444 1 77777777777777777777776666666666655543 22222
Q ss_pred ---HHHHHHHHHHH----HHHHhhhhhcc
Q 025638 225 ---KLVISQYQDQA----RNLEVIFLILT 246 (250)
Q Consensus 225 ---kq~v~qYqeqi----r~LE~~NYaLs 246 (250)
-+-+.+|+.++ |.+--++..++
T Consensus 186 ~~~~~~l~~~~~~~~~~l~~~~~~~~~ir 214 (343)
T PRK09039 186 AQRVQELNRYRSEFFGRLREILGDREGIR 214 (343)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhCCCCCcE
Confidence 22345566655 65544444443
No 46
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=68.03 E-value=91 Score=27.96 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKL 226 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq 226 (250)
+..|...|+.+++.|-..|.-|++-|.-|+....+.+....++...++
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888889999999999999999999999888887776666654433
No 47
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=67.63 E-value=83 Score=28.39 Aligned_cols=38 Identities=32% Similarity=0.302 Sum_probs=20.3
Q ss_pred HHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025638 192 SLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (250)
Q Consensus 192 ~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~ 229 (250)
.+.+||..||+=++....+..++++..+|.++||+++.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444445555566667777776654
No 48
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=67.58 E-value=4.2 Score=27.18 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=21.2
Q ss_pred CCHHHHHHHHhhchhhHHHHHHHHh
Q 025638 54 VDPEVVKSVLGEHDNKIEDAIDRLR 78 (250)
Q Consensus 54 md~q~le~aLe~cgndlDaAIksL~ 78 (250)
++.++|+.+|+.||.++..|-+.|.
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~Lg 29 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLLG 29 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 4678999999999999999988875
No 49
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=67.15 E-value=29 Score=28.24 Aligned_cols=26 Identities=35% Similarity=0.333 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv 204 (250)
+..|...||.++..|+.||+-|+.=-
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN 45 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIEN 45 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999887543
No 50
>PRK03918 chromosome segregation protein; Provisional
Probab=66.90 E-value=1.5e+02 Score=30.86 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=20.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHHHh
Q 025638 143 FVHEMMSAADLDDARGRAARILEVFERSIIT 173 (250)
Q Consensus 143 ~V~EM~sAsd~dDARaRAsRvLEafEksi~~ 173 (250)
++.++.....++.+..++..+...++..+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (880)
T PRK03918 150 VVRQILGLDDYENAYKNLGEVIKEIKRRIER 180 (880)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776666666665444
No 51
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=66.50 E-value=35 Score=30.47 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025638 213 EQEQKEKEVELLKLVISQYQDQARNLEVIF 242 (250)
Q Consensus 213 e~e~~~~E~~~lkq~v~qYqeqir~LE~~N 242 (250)
+++++..||.. +=+=|.|||-.||-.|
T Consensus 138 qLe~ke~el~~---~d~fykeql~~le~k~ 164 (187)
T PF05300_consen 138 QLEEKEAELKK---QDAFYKEQLARLEEKN 164 (187)
T ss_pred HHHhhHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34555555444 7788999999999887
No 52
>PRK02224 chromosome segregation protein; Provisional
Probab=64.74 E-value=1.7e+02 Score=30.63 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
.+.+...+++++..+-.+-.-|++-+.--+.+.++++...+++..+..-+...++++..+
T Consensus 211 ~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~ 270 (880)
T PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAET 270 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666655555555555555555554544444444444444443
No 53
>CHL00098 tsf elongation factor Ts
Probab=64.60 E-value=5.1 Score=35.92 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=28.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhccccc
Q 025638 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (250)
Q Consensus 44 l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa 85 (250)
|-.||.. -+-.-.--.+||++||+|+|.||.-|..--+..+
T Consensus 5 ik~LR~~-Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g~~~a 45 (200)
T CHL00098 5 VKELRDK-TGAGMMDCKKALQEANGDFEKALESLRQKGLASA 45 (200)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHH
Confidence 4445544 3334445689999999999999999988544333
No 54
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=63.99 E-value=43 Score=32.72 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-h-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 025638 182 EHASLKEHLQSLLNDNQILKKAVSIQHERHL-E-QEQKEKEVELLKLVISQYQDQARNLEVIFLILTLLGP 250 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKrAv~iQh~R~~-e-~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~hl~ 250 (250)
+-..++.+++.|..+.+.+-+.+.. -.+.+ + .++...+...||+-+..+.++++.+|..=+.+-+++|
T Consensus 38 ~~r~~~~~~~~l~~erN~~sk~i~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lP 107 (418)
T TIGR00414 38 ERKKLLSEIEELQAKRNELSKQIGK-AKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIP 107 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344444444444444444333322 11112 2 5677778899999999999999999988887777776
No 55
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=63.34 E-value=85 Score=27.03 Aligned_cols=66 Identities=24% Similarity=0.261 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 025638 179 KELEHASLKEHLQSLLN----DNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLIL 245 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~----eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaL 245 (250)
-..|.+-||+....|.+ +|==.|| |.-+|+-.++.-...+||.+|++-+++-+-.+..++..-|+|
T Consensus 45 ~reEVvrlKQrRRTLKNRGYA~sCR~KR-v~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 45 SREEVVRLKQRRRTLKNRGYAQSCRVKR-VQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888777764 3333444 566788888888888999999999888888888777766665
No 56
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=62.34 E-value=5.7 Score=37.49 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=23.1
Q ss_pred HHHHHHhhchhhHHHHHHHHhhhccccc
Q 025638 58 VVKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (250)
Q Consensus 58 ~le~aLe~cgndlDaAIksL~~L~L~sa 85 (250)
--.+||++|++|||.||+-|..--+..+
T Consensus 21 dCKkAL~e~~gDiekAi~~LRkkG~akA 48 (290)
T TIGR00116 21 DCKKALTEANGDFEKAIKNLRESGIAKA 48 (290)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhchhHH
Confidence 3679999999999999999998544444
No 57
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=61.53 E-value=69 Score=24.30 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025638 185 SLKEHLQSLLNDNQILKKAVSIQHERHLEQE----QKEKEVELLKLVISQYQDQARNLEVI 241 (250)
Q Consensus 185 ~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e----~~~~E~~~lkq~v~qYqeqir~LE~~ 241 (250)
.|+..++.|.-.|..|-.+.-+.|.+--++- ..+...-.| ++--||+++++.++-.
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~al-rlal~ys~r~~e~~~~ 61 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATAL-RLALKYSERCKEAYEV 61 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHH
Confidence 4788999999999999999988887754332 334445555 7888999999988754
No 58
>PRK09377 tsf elongation factor Ts; Provisional
Probab=60.34 E-value=6.5 Score=37.11 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=23.3
Q ss_pred HHHHHHHhhchhhHHHHHHHHhhhccccc
Q 025638 57 EVVKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (250)
Q Consensus 57 q~le~aLe~cgndlDaAIksL~~L~L~sa 85 (250)
.--.+||++|++|+|.||+-|..--+..+
T Consensus 21 ~dCKkAL~e~~gD~ekAi~~Lrk~G~akA 49 (290)
T PRK09377 21 MDCKKALTEADGDIEKAIEWLRKKGLAKA 49 (290)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhchhhH
Confidence 34679999999999999999998544333
No 59
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=60.24 E-value=6.8 Score=34.99 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=30.5
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhccccc
Q 025638 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (250)
Q Consensus 43 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa 85 (250)
+|-.||.. -+...---.+||++|++|+|.||.-|..--+..+
T Consensus 7 ~ik~LR~~-tga~~~~ck~AL~~~~gd~~~A~~~lr~~g~~~a 48 (198)
T PRK12332 7 LVKELREK-TGAGMMDCKKALEEANGDMEKAIEWLREKGLAKA 48 (198)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHH
Confidence 45556555 3444455789999999999999999998544444
No 60
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=60.19 E-value=97 Score=31.65 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhhhh-h-----hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 025638 160 AARILEVFERSIITNSKA-S-----KELEHASLKEHLQSLLNDNQILKKAVSIQHER 210 (250)
Q Consensus 160 AsRvLEafEksi~~rs~a-a-----~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R 210 (250)
..-.+++..|+|..+... . .++|.+.+||.-..|++.-.+.+.=+.-+.+|
T Consensus 369 ~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~ 425 (493)
T KOG0804|consen 369 ESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEER 425 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344566667777666655 2 55566666644444444433333333333333
No 61
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=60.03 E-value=48 Score=27.31 Aligned_cols=33 Identities=30% Similarity=0.312 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERH 211 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~ 211 (250)
+.+|...||.++..|+.||+-|+.--.-=.+|.
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999875433333333
No 62
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=60.01 E-value=25 Score=32.64 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~ 229 (250)
+++||+.||+++..|..+-.. .+++..+|.++||+++.
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~-------------~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEI-------------LTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhc
Confidence 778888888887766222211 22335667777777653
No 63
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=59.61 E-value=11 Score=31.45 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 53 DVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
+.+..--.+||++|++||-.||..|..
T Consensus 88 gvs~~~A~~AL~~~~gDl~~AI~~L~~ 114 (115)
T PRK06369 88 GVSEEEARKALEEANGDLAEAILKLSS 114 (115)
T ss_pred CcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence 345555678999999999999988753
No 64
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=59.52 E-value=52 Score=31.73 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQ 207 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQ 207 (250)
+..|..+|++.+..+..||.+|+.-++-|
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 77788888888888888888888876654
No 65
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=58.44 E-value=51 Score=29.40 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhhhh--------hhhHHHHHHHHHHHHHHhhHHHHHHH
Q 025638 162 RILEVFERSIITNSKA--------SKELEHASLKEHLQSLLNDNQILKKA 203 (250)
Q Consensus 162 RvLEafEksi~~rs~a--------a~~kEn~~LKe~l~~l~~eN~iLKrA 203 (250)
-||.+|||.+.+.=-. ++.+=+..+|+||-.+|.+-+-||..
T Consensus 108 VvL~~FEk~~~eYkq~ieS~~cr~AI~~F~~~~keqL~~~i~evq~lK~l 157 (175)
T PF13097_consen 108 VVLSAFEKTALEYKQSIESKICRKAINKFYSNFKEQLIEMIKEVQELKNL 157 (175)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999998764222 25555667788888888887777754
No 66
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=57.64 E-value=15 Score=38.05 Aligned_cols=48 Identities=31% Similarity=0.387 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhhhh-h---hhHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 025638 163 ILEVFERSIITNSKA-S---KELEH-ASLKEHLQSLLNDNQILKKAVSIQHER 210 (250)
Q Consensus 163 vLEafEksi~~rs~a-a---~~kEn-~~LKe~l~~l~~eN~iLKrAv~iQh~R 210 (250)
||.-..+.|..|-.| + ..||. ..|+-.|++|+.||.+||+==+---.|
T Consensus 279 v~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~q 331 (655)
T KOG4343|consen 279 VLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQ 331 (655)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 555556666666555 2 44443 346666666666666666544433333
No 67
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=56.50 E-value=89 Score=32.34 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=9.9
Q ss_pred ccccccCCCCCCCCCCccccc
Q 025638 10 VGFEEICGSSSPTSAKRSRCS 30 (250)
Q Consensus 10 s~fedl~~s~~p~~sKR~Rcs 30 (250)
.+|-++..+= +| ..+.=|.
T Consensus 7 ViF~nV~~~Y-~P-~~~v~C~ 25 (546)
T PF07888_consen 7 VIFNNVAKSY-IP-GTDVECH 25 (546)
T ss_pred EEEecccccc-CC-CCCeEEE
Confidence 4677765553 23 3455553
No 68
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=56.35 E-value=1e+02 Score=27.92 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 215 EQKEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 215 e~~~~E~~~lkq~v~qYqeqir~LE 239 (250)
++++.+.+.||..|..|.|+|..+-
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999998763
No 69
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=56.16 E-value=12 Score=27.98 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 025638 220 EVELLKLVISQYQDQARNLEVIFLILT 246 (250)
Q Consensus 220 E~~~lkq~v~qYqeqir~LE~~NYaLs 246 (250)
||.-||.-|...++++..||..|.-|+
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444
No 70
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=55.73 E-value=35 Score=27.88 Aligned_cols=11 Identities=45% Similarity=0.767 Sum_probs=5.8
Q ss_pred hhhhHHHHHHH
Q 025638 136 GSKWVDLFVHE 146 (250)
Q Consensus 136 g~eWVEl~V~E 146 (250)
|.++++-||++
T Consensus 24 ~~k~~~~LVkk 34 (118)
T TIGR01837 24 GSKFFNRLVKE 34 (118)
T ss_pred HHHHHHHHHHh
Confidence 45555555553
No 71
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=55.66 E-value=13 Score=31.05 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=20.0
Q ss_pred CCHHHHHHHHhhchhhHHHHHHHHh
Q 025638 54 VDPEVVKSVLGEHDNKIEDAIDRLR 78 (250)
Q Consensus 54 md~q~le~aLe~cgndlDaAIksL~ 78 (250)
.+..--.+||++|++||-.||-.|.
T Consensus 91 vs~e~A~~AL~~~~gDl~~AI~~L~ 115 (116)
T TIGR00264 91 VSKEEARRALEECGGDLAEAIMKLE 115 (116)
T ss_pred cCHHHHHHHHHHcCCCHHHHHHHhh
Confidence 4445567899999999999998774
No 72
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=55.62 E-value=1.1e+02 Score=24.96 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE-----------QKEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e-----------~~~~E~~~lkq~v~qYqeqir~LE 239 (250)
++.|...+++....+..+-.-++.=+..|+.+-++.+ +-.++++.||.-+..++.+|..|.
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~ 79 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELK 79 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 73
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.08 E-value=68 Score=24.43 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILK 201 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLK 201 (250)
+..+|..|++....|..+|.-||
T Consensus 30 Lke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 30 LKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 88888889999999999998888
No 74
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=55.05 E-value=52 Score=29.04 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHH
Q 025638 161 ARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILK 201 (250)
Q Consensus 161 sRvLEafEksi~~rs~aa~~kEn~~LKe~l~~l~~eN~iLK 201 (250)
-++|+.|...... .. .+.+||..|++++..|..+|.-|.
T Consensus 86 I~fLq~l~~~~~~-~~-~~~~e~~~l~~e~~~l~~~~e~Le 124 (161)
T TIGR02894 86 ISFLQNLKTTNPS-DQ-ALQKENERLKNQNESLQKRNEELE 124 (161)
T ss_pred HHHHHHHHhcchh-HH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666532211 11 266677777777766666665543
No 75
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=54.92 E-value=1.9e+02 Score=27.21 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE 239 (250)
.+.|...+|++|..+-.+..-+|+-+.-. +.+.+..+.++..++....+++++|..+|
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el---~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAEL---QEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55577788888888877777777766543 33445555566777777778888887776
No 76
>PRK11637 AmiB activator; Provisional
Probab=53.52 E-value=2.2e+02 Score=27.55 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025638 219 KEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 219 ~E~~~lkq~v~qYqeqir~L 238 (250)
+++.+|++...+++.+|..|
T Consensus 233 ~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 233 QQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 77
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.15 E-value=1.1e+02 Score=25.88 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 182 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
|...|++++..|-.++..|+--+..=.... --+++..++.+|++-+.++++++..|.-
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~-t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEP-TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444443333222222 2244566667777777777777777665
No 78
>PLN02320 seryl-tRNA synthetase
Probab=53.10 E-value=1.1e+02 Score=31.23 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 025638 182 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLILTLLGP 250 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~hl~ 250 (250)
+...++.+++.|..+.+-+-+.+.. ..-..+.++...|...||+-+....++++.+|..=..+-+++|
T Consensus 101 ~~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iP 168 (502)
T PLN02320 101 NMLALQKEVERLRAERNAVANKMKG-KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIP 168 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344444555555444444444432 1112245666677788888888888888887766655555554
No 79
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=53.02 E-value=74 Score=27.60 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVE-LLKLVISQYQDQARNL 238 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~-~lkq~v~qYqeqir~L 238 (250)
+..|...|..+++.|-.+|.-|..-+.-.|....-++++..++. .++.+...|.+-|+++
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~ 147 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKL 147 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788889999999999999888555555554444455444442 4556666776666665
No 80
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=52.62 E-value=24 Score=27.53 Aligned_cols=28 Identities=36% Similarity=0.349 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSI 206 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~i 206 (250)
+++||..||++++.|-.|-.-+||-+.|
T Consensus 5 i~eEn~~Lk~eiqkle~ELq~~~~~~qI 32 (76)
T PF07334_consen 5 IQEENARLKEEIQKLEAELQQNKREFQI 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 6788888888888877666666666554
No 81
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=52.57 E-value=34 Score=33.19 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQY 231 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qY 231 (250)
+.+||..||+++..|..++ ..+++..+|...|+.+..+|
T Consensus 62 L~~EN~~Lk~Ena~L~~~l--------------~~~e~l~~En~~Lr~ll~~~ 100 (337)
T PRK14872 62 LETENFLLKERIALLEERL--------------KSYEEANQTPPLFSEILSPY 100 (337)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhccc
Confidence 5556666555555553333 33444455555677676665
No 82
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=51.59 E-value=1.4e+02 Score=24.80 Aligned_cols=14 Identities=29% Similarity=0.603 Sum_probs=5.5
Q ss_pred HHHHHHHHhhHHHH
Q 025638 187 KEHLQSLLNDNQIL 200 (250)
Q Consensus 187 Ke~l~~l~~eN~iL 200 (250)
.+.+-.|..+|.-+
T Consensus 50 ~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 50 REEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444333
No 83
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=51.55 E-value=51 Score=24.95 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILK 201 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLK 201 (250)
+..||..|++++..+..|+.-|+
T Consensus 19 L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 19 LKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888877777665
No 84
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=51.38 E-value=80 Score=29.36 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHH----HHhhHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQS----LLNDNQILKKAVSIQ 207 (250)
Q Consensus 179 ~~kEn~~LKe~l~~----l~~eN~iLKrAv~iQ 207 (250)
+.+|+..|++++.. +.+||.-||+.+.++
T Consensus 78 Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 78 LRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 55555555333332 666777777766554
No 85
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=51.34 E-value=1.1e+02 Score=27.58 Aligned_cols=22 Identities=32% Similarity=0.225 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQIL 200 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iL 200 (250)
+++||+.||+++..|..++.-+
T Consensus 74 l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 74 LREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777766666555
No 86
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=51.01 E-value=2.4e+02 Score=27.34 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=56.8
Q ss_pred hhhhHHHHHHHHhc----CCCchHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 025638 136 GSKWVDLFVHEMMS----AADLDDARGRAARILEVFERSIITNSKA-SKELEHASLKEHLQSLLNDNQILKKAVSIQHER 210 (250)
Q Consensus 136 g~eWVEl~V~EM~s----Asd~dDARaRAsRvLEafEksi~~rs~a-a~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R 210 (250)
+.+=+|.|+.++.. -.+++++|+==..-++++|++..+-.+. +|.+ -...++.--..||+++-.+=+.
T Consensus 206 ~~ks~e~~~~~l~~~~~~g~~v~s~re~~d~W~~~ae~~~~e~~~S~efak-------~~G~lvna~m~lr~~~qe~~e~ 278 (320)
T TIGR01834 206 GYKSFAALMSDLLARAKSGKPVKTAKALYDLWVIAAEEAYAEVFASEENAK-------VHGKFINALMRLRIQQQEIVEA 278 (320)
T ss_pred HHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHcCHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555553 2555666655556666666666554443 2222 2233333334444444443332
Q ss_pred ---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025638 211 ---------HLEQEQKEKEVELLKLVISQYQDQARNLEVIF 242 (250)
Q Consensus 211 ---------~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~N 242 (250)
..|.++..+.|..||.-+..-..+|++|+.++
T Consensus 279 ~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~~ 319 (320)
T TIGR01834 279 LLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEANP 319 (320)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 24677777788888888888888888888654
No 87
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=50.12 E-value=22 Score=26.37 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=29.6
Q ss_pred cCCCCCHHHHHHHHhhchhhHHHHHHHHhhhcc
Q 025638 50 MFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (250)
Q Consensus 50 lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (250)
..=+|-.+-=++.||++|=|++.|++.+.+|.-
T Consensus 21 ~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~lk~ 53 (63)
T smart00804 21 AQTGMNAEYSQMCLEDNNWDYERALKNFTELKS 53 (63)
T ss_pred HHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 346888999999999999999999999999874
No 88
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=49.74 E-value=2.4e+02 Score=31.68 Aligned_cols=59 Identities=25% Similarity=0.320 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025638 179 KELEHASLKEHLQSLLN-DNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVI 241 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~-eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~ 241 (250)
+++|++.|.+++..|-. .|.+...+..+|+++ +....+..+|+.-+.+|+++|+.|.-+
T Consensus 406 L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~----~~i~~~i~~l~k~i~~~~~~l~~lk~~ 465 (1074)
T KOG0250|consen 406 LKKEVEKLEEQINSLREELNEVKEKAKEEEEEK----EHIEGEILQLRKKIENISEELKDLKKT 465 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555555555543 355556677777776 344556788888999999999999754
No 89
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=49.40 E-value=86 Score=28.09 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=31.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 025638 189 HLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQ 234 (250)
Q Consensus 189 ~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeq 234 (250)
++..|+.|--.|+++|+-.|.|+ .+.-+-.-|.+.+|||..
T Consensus 85 ~~~~LL~EELkLqe~~A~e~~~~-----~~~~lleAkk~asqYQkE 125 (176)
T PF06364_consen 85 NFVDLLSEELKLQEAVANENQRR-----ADMALLEAKKMASQYQKE 125 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 55568888888999999888876 444566678899999954
No 90
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=49.27 E-value=1.9e+02 Score=25.64 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
..+|...|+.++....++...|+.+-+....-.+++.....|-..|.|-+.+-+..-..|
T Consensus 67 a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 67 AEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888888888888888877777777777766666666666666555554444
No 91
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=48.78 E-value=3e+02 Score=28.02 Aligned_cols=58 Identities=21% Similarity=0.376 Sum_probs=26.3
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHH
Q 025638 139 WVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKA 203 (250)
Q Consensus 139 WVEl~V~EM~sAsd~dDARaRAsRvLEafEksi~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKrA 203 (250)
|+=.|+.-+ ...+.+.+.|=.+..+.+++........ +..|+++++.|..+....+++
T Consensus 68 ~~~~~~~~~--~~~l~~~~~~l~~~~~~l~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~ 125 (779)
T PRK11091 68 WAVYFLSVV--VEQLEESRQRLSRLVAKLEEMRERDLEL-----NVQLKDNIAQLNQEIAEREKA 125 (779)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 544444332 2334445555555566665554443222 233444444444444444433
No 92
>PHA02562 46 endonuclease subunit; Provisional
Probab=48.72 E-value=2.4e+02 Score=27.55 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKA 203 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrA 203 (250)
.+.+...|+.++..+..+...+++.
T Consensus 179 ~~~~i~~l~~~i~~l~~~i~~~~~~ 203 (562)
T PHA02562 179 LNQQIQTLDMKIDHIQQQIKTYNKN 203 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4445555555555555444444333
No 93
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=48.56 E-value=65 Score=29.84 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=19.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 025638 187 KEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQ 234 (250)
Q Consensus 187 Ke~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeq 234 (250)
+.++.-|-+||..|++-| +.+.+|+.+|+++..+|...
T Consensus 221 ~~r~~~leken~~lr~~v----------~~l~~el~~~~~~~~~~~~~ 258 (269)
T KOG3119|consen 221 AHRVAELEKENEALRTQV----------EQLKKELATLRRLFLQLPKP 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhccc
Confidence 344555555555555433 33445566666666655443
No 94
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=48.20 E-value=1.7e+02 Score=25.38 Aligned_cols=75 Identities=24% Similarity=0.283 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 161 ARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 161 sRvLEafEksi~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
..-|+.+++.+...... . +..|+..|++.+..+-.+-.-..+++ +..+-|+.-|.-.+..-.++++.|
T Consensus 101 ~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~----------e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 101 NDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN----------EILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666655555 2 66666666666665555554444443 334445666666666677777777
Q ss_pred Hhhhhhc
Q 025638 239 EVIFLIL 245 (250)
Q Consensus 239 E~~NYaL 245 (250)
|.-|=-|
T Consensus 171 ~~En~~L 177 (194)
T PF08614_consen 171 EEENREL 177 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666443
No 95
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=47.45 E-value=60 Score=30.08 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVS 205 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~ 205 (250)
+.+||..|+.+++.|.+|+.-||+.+.
T Consensus 227 leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 227 LEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999875
No 96
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=47.44 E-value=1.1e+02 Score=26.02 Aligned_cols=38 Identities=32% Similarity=0.420 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 025638 186 LKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKL 226 (250)
Q Consensus 186 LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq 226 (250)
..|.+..+..||..||-|+.-= |--|++-.+.+.-|++
T Consensus 83 KdETI~~lk~EN~fLKeAl~s~---QE~y~ed~kTI~~L~~ 120 (126)
T PF13118_consen 83 KDETIEALKNENRFLKEALYSM---QELYEEDRKTIELLRE 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHH
Confidence 3456889999999999987521 2234444444444433
No 97
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=47.31 E-value=34 Score=30.91 Aligned_cols=42 Identities=29% Similarity=0.295 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 197 NQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 197 N~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
|++|||=.++=-++.--+|+++.|.-. -.-.|||+-+-..|-
T Consensus 96 ~q~L~k~daf~Ke~larlEen~~e~yk--v~~eqy~~aaE~Vek 137 (192)
T KOG4083|consen 96 SQELKKQDAFYKEQLARLEENSSEFYK--VTTEQYQKAAERVEK 137 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHHHHH
Confidence 344444444444444444444444332 123445554444443
No 98
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=46.55 E-value=32 Score=32.06 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=44.1
Q ss_pred CChhhhHHHHHHHHhcC-------CCchHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHhh
Q 025638 134 TDGSKWVDLFVHEMMSA-------ADLDDARGRAARILEVFERSIITNSKA-SKELEHASLKEHLQSLLND 196 (250)
Q Consensus 134 ~~g~eWVEl~V~EM~sA-------sd~dDARaRAsRvLEafEksi~~rs~a-a~~kEn~~LKe~l~~l~~e 196 (250)
..|.=--+..++-|-++ .+.-|=|+ |+|++|++.|.+--.+.. .+.||.+++++|++.+.++
T Consensus 157 ~~g~ll~e~~~r~i~a~~ll~et~~~~PDP~A-Aa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~eq 226 (244)
T COG1938 157 PSGALLNECLKRGIPALVLLAETFGDRPDPRA-AARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQ 226 (244)
T ss_pred ccHHHHHHHHHcCCCeEEEeccccCCCCChHH-HHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555432 34446665 789999999999888777 4999999998888887664
No 99
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=46.26 E-value=1.3e+02 Score=26.34 Aligned_cols=58 Identities=26% Similarity=0.350 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
+..|+..|+.++..+.....-+++ .+.+.|+.+.....-|++-||..-.|...|++++
T Consensus 132 L~~e~~~L~~~~~~l~~~~e~~ek--~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 132 LEEEKEELEKQVQELKNKCEQLEK--REEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 100
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=46.08 E-value=22 Score=30.05 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=18.9
Q ss_pred HHHHHHHHhhchhhHHHHHHHHh
Q 025638 56 PEVVKSVLGEHDNKIEDAIDRLR 78 (250)
Q Consensus 56 ~q~le~aLe~cgndlDaAIksL~ 78 (250)
..=..+||++||.||-.||=+|.
T Consensus 99 reeA~kAL~e~~GDlaeAIm~L~ 121 (122)
T COG1308 99 REEAIKALEEAGGDLAEAIMKLT 121 (122)
T ss_pred HHHHHHHHHHcCCcHHHHHHHhc
Confidence 33467899999999999998874
No 101
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=46.04 E-value=34 Score=35.27 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=32.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 025638 204 VSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLILTL 247 (250)
Q Consensus 204 v~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~ 247 (250)
..|=+.|.+|.+ |+++|.--++-|=|+||.||-.|-.|..
T Consensus 31 s~ir~sR~rEK~----El~~LNDRLA~YIekVR~LEaqN~~L~~ 70 (546)
T KOG0977|consen 31 SPIRDSREREKK----ELQELNDRLAVYIEKVRFLEAQNRKLEH 70 (546)
T ss_pred hhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566765554 5999999999999999999999998864
No 102
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=46.01 E-value=93 Score=26.62 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhccc
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS----QYQDQARNLEVIFLILTL 247 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~----qYqeqir~LE~~NYaLs~ 247 (250)
...|...||.||...-.+-.=||.- ..+.++.+.++..|+.-.. .|+.++..+.. ||||..
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~-------~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~-~~ai~~ 89 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKS-------AKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK-DSAIKS 89 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4456777777777776666666662 3466677777777776666 88888888876 556543
No 103
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=45.70 E-value=1.7e+02 Score=24.09 Aligned_cols=94 Identities=19% Similarity=0.141 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHhh-hhHHHHHHHHH
Q 025638 153 LDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSI-------QHERH-LEQEQKEKEVE 222 (250)
Q Consensus 153 ~dDARaRAsRvLEafEksi~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKrAv~i-------Qh~R~-~e~e~~~~E~~ 222 (250)
|-.-|.|-.+..|.++.-+..-... . ++..+..||++++.+-++...++.-..- ..... .+-++.++-..
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778888888888877775555 2 5555666666666665555544322211 11111 12233334344
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcc
Q 025638 223 LLKLVISQYQDQARNLEVIFLILT 246 (250)
Q Consensus 223 ~lkq~v~qYqeqir~LE~~NYaLs 246 (250)
.+.+.-.||.-.+|.-|...=.|.
T Consensus 123 ~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 123 QLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888777655544
No 104
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=45.68 E-value=1.5e+02 Score=28.13 Aligned_cols=58 Identities=24% Similarity=0.203 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 180 ELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 180 ~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
+.|...+|+.+.....++...++=+.....+ ....+..+...+....+++++|+.+|.
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~---l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEE---LQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366777777777777777766665544444 344555666666678888888888875
No 105
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=45.56 E-value=1.6e+02 Score=26.96 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhhhh
Q 025638 164 LEVFERSIITNSKA 177 (250)
Q Consensus 164 LEafEksi~~rs~a 177 (250)
|-.|++.|.++-..
T Consensus 103 l~iF~~eI~~~l~~ 116 (301)
T PF14362_consen 103 LKIFEKEIDQKLDE 116 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555554443
No 106
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=45.44 E-value=36 Score=34.38 Aligned_cols=51 Identities=25% Similarity=0.182 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025638 186 LKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLI 244 (250)
Q Consensus 186 LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYa 244 (250)
-|-++..-.. |.|+-+-+.+|- ||-.++-.+.+ ++..||.||+++|-+-|+
T Consensus 352 ~k~e~~~k~s-Nvi~eKt~Lrqk-rq~A~e~~n~k------~~~ey~~qL~~~E~~~~~ 402 (521)
T COG5296 352 CKDEVHPKRS-NVIHEKTELRQK-RQRAIELKNKK------AAMEYQRQLEEIEDNEGA 402 (521)
T ss_pred HHHhcCccch-hHHHHHHHHHHH-HHHHHHccCHH------HHHHHHHHHHHHHHhhhc
Confidence 3444444444 888888888884 56566655543 788999999999998876
No 107
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=44.70 E-value=20 Score=34.93 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=44.8
Q ss_pred cccccCCCCCCCCCC---CCcHHHHHhcC----CCCCHHHHHHHHhhchhhHHHHHHHHhhhcccc
Q 025638 26 RSRCSTFGSLVRSGS---DDPVSFLLQMF----PDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSN 84 (250)
Q Consensus 26 R~Rcsss~sp~r~~~---~~~l~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~L~s 84 (250)
.+||+. .||.+ ++.+..|+.+= =+||+..+..+++-||+||-.||--|-+|.+..
T Consensus 177 ~SRC~K----frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~g 238 (346)
T KOG0989|consen 177 VSRCQK----FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLG 238 (346)
T ss_pred HhhHHH----hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccC
Confidence 668854 57777 55667777664 479999999999999999999999999988743
No 108
>smart00338 BRLZ basic region leucin zipper.
Probab=44.60 E-value=1.1e+02 Score=21.83 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 025638 182 EHASLKEHLQSLLNDNQILKK 202 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKr 202 (250)
....|..++..|..+|.-|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~ 47 (65)
T smart00338 27 EIEELERKVEQLEAENERLKK 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555543
No 109
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=44.37 E-value=1.2e+02 Score=29.09 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 025638 182 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQ 232 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYq 232 (250)
|-..|-.+++.|-+.|.=||+=+ +++.+|++-|||++...+
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa----------~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQA----------SELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 44455556667777776666532 345667777777765443
No 110
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.45 E-value=1.2e+02 Score=30.98 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q 025638 182 EHASLKEHLQSLLNDNQILKKAVS 205 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKrAv~ 205 (250)
-...|+++|+.|.+|...+++-..
T Consensus 77 kasELEKqLaaLrqElq~~saq~~ 100 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRG 100 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 445556666666555555555433
No 111
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=42.09 E-value=46 Score=26.40 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 213 EQEQKEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 213 e~e~~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
..++.++|....++-+.||+.+++.|+-
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~n 29 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLEN 29 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888889999999888874
No 112
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=41.13 E-value=1.8e+02 Score=22.92 Aligned_cols=34 Identities=24% Similarity=0.184 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025638 211 HLEQEQKEKEVELLKLVISQYQDQARNLEVIFLI 244 (250)
Q Consensus 211 ~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYa 244 (250)
.++...+..+++..-+.|++-.+||..||..=|.
T Consensus 51 ~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~ 84 (99)
T PF10046_consen 51 LEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYE 84 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555566666666654443
No 113
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=40.54 E-value=4.1e+02 Score=26.99 Aligned_cols=13 Identities=46% Similarity=0.552 Sum_probs=8.0
Q ss_pred chHHHHHHHHHHH
Q 025638 153 LDDARGRAARILE 165 (250)
Q Consensus 153 ~dDARaRAsRvLE 165 (250)
+.+|+..|..+++
T Consensus 27 l~~Ae~eAe~i~k 39 (514)
T TIGR03319 27 LGSAEELAKRIIE 39 (514)
T ss_pred HHHHHHHHHHHHH
Confidence 3466777766664
No 114
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=40.47 E-value=1.9e+02 Score=24.46 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHHHHHhh
Q 025638 153 LDDARGRAARILEVFERSIITNSKAS-------KELEHASLKEHLQSLLND 196 (250)
Q Consensus 153 ~dDARaRAsRvLEafEksi~~rs~aa-------~~kEn~~LKe~l~~l~~e 196 (250)
++|.+.||..-+.-+|+.+-.|+..+ -.+|...|...+..|..+
T Consensus 74 ~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~ 124 (132)
T PF05597_consen 74 VDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQ 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 67777888888888888888877663 444555555555554443
No 115
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=40.40 E-value=3.3e+02 Score=25.89 Aligned_cols=57 Identities=14% Similarity=0.049 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 184 ASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 184 ~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
..++.+...|..+-.-+|+-+.---....+|....+|+.--+.+...|-++....++
T Consensus 314 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l 370 (444)
T TIGR03017 314 RILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRI 370 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334445666666666655555555555555444
No 116
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=40.27 E-value=12 Score=26.51 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHhhchhhHHHHHHHHhhhccc
Q 025638 53 DVDPEVVKSVLGEHDNKIEDAIDRLRVLSFS 83 (250)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~~L~L~ 83 (250)
+|.++.-.+.|+++|=|++.||..+..|.-.
T Consensus 12 gmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~~ 42 (51)
T PF03943_consen 12 GMNLEWSQKCLEENNWDYERALQNFEELKAQ 42 (51)
T ss_dssp SS-CCHHHHHHHHTTT-CCHHHHHHHHCCCT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 6778888999999999999999999987643
No 117
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=40.11 E-value=2.2e+02 Score=30.47 Aligned_cols=35 Identities=31% Similarity=0.140 Sum_probs=28.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025638 208 HERHLEQEQKEKEVELLKLVISQYQDQARNLEVIF 242 (250)
Q Consensus 208 h~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~N 242 (250)
-+-+++...+++||.+||-.|.|-|-|.+.|-..|
T Consensus 117 Eelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 117 EELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 34445667788999999999999999999885544
No 118
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.98 E-value=3e+02 Score=27.09 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
..++.+.+.+++..+++-+...|.++.-=+.-.+-.+..++++...|..+.++..+.+.+
T Consensus 354 ~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 413 (503)
T KOG2273|consen 354 AEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSS 413 (503)
T ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Confidence 466788899999999999988888886554444555667777777777777777777553
No 119
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=39.92 E-value=2.3e+02 Score=25.21 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=42.7
Q ss_pred HHHHHHHH---HHHhhhhhhhhHHHHHHH----HHHHHHHhhHHHHHHHHHHHH--------------------------
Q 025638 162 RILEVFER---SIITNSKASKELEHASLK----EHLQSLLNDNQILKKAVSIQH-------------------------- 208 (250)
Q Consensus 162 RvLEafEk---si~~rs~aa~~kEn~~LK----e~l~~l~~eN~iLKrAv~iQh-------------------------- 208 (250)
.=|.+||- -+..-+++.-..-|..++ ++++.+.+++.-+||+...|.
T Consensus 29 tql~afe~~g~~L~rt~aac~fRwNs~vrk~Yee~I~~AKK~Rke~kr~l~~~~~~~~~~~~~~~~~~~~~~~~it~~~v 108 (170)
T PRK13923 29 TQLKAFEEVGDALKRTAAACGFRWNSVVRKQYQEQIKLAKKERKELRRQLGFSPSNLPDNVKTGDEIITSGISDLTLEDV 108 (170)
T ss_pred hHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHhhccccCCCccccccccccccccCCcccCCHHHH
Confidence 34667773 333323331222244444 788888999999998743222
Q ss_pred ------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 209 ------ERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 209 ------~R~~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
.-++..+..+.|++.|++-...|+|..++|
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~L 144 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRAL 144 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112234445566666666666666666665
No 120
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.23 E-value=71 Score=32.50 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKK 202 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKr 202 (250)
++++.+.||.+++.+.+++.-+.+
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~ 104 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQR 104 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHH
Confidence 666666666666655555554544
No 121
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=38.89 E-value=37 Score=28.01 Aligned_cols=19 Identities=32% Similarity=0.244 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHhhH
Q 025638 179 KELEHASLKEHLQSLLNDN 197 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN 197 (250)
+++||-+||.+++.|+.-.
T Consensus 84 LeEENNlLklKievLLDML 102 (108)
T cd07429 84 LEEENNLLKLKIEVLLDML 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777777777776543
No 122
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=38.84 E-value=4.8e+02 Score=27.86 Aligned_cols=6 Identities=17% Similarity=0.241 Sum_probs=2.3
Q ss_pred HHHHHH
Q 025638 159 RAARIL 164 (250)
Q Consensus 159 RAsRvL 164 (250)
||..++
T Consensus 501 ~A~~~~ 506 (771)
T TIGR01069 501 QAKTFY 506 (771)
T ss_pred HHHHHH
Confidence 333333
No 123
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=38.52 E-value=3.3e+02 Score=25.32 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=27.5
Q ss_pred CChhhh----HHHHHHH---HhcCCC-chHHHHHHHHHHHHHHHH
Q 025638 134 TDGSKW----VDLFVHE---MMSAAD-LDDARGRAARILEVFERS 170 (250)
Q Consensus 134 ~~g~eW----VEl~V~E---M~sAsd-~dDARaRAsRvLEafEks 170 (250)
.=.+.| .-+|..| |+-.-| +.+||.-|..|+.+=++.
T Consensus 20 iI~a~~~~~~L~~~~~e~~a~~~s~~il~~A~rkA~~I~q~A~~~ 64 (224)
T PRK15354 20 IIESQWITLQLTLFAQEQQAKRVSHAIVSSAYRKAEKIIRDAYRY 64 (224)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899 6667778 765555 578999999999876654
No 124
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=38.21 E-value=3e+02 Score=26.58 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=39.9
Q ss_pred HHHHHHH--hhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH-HHHHHHHHH
Q 025638 166 VFERSII--TNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ-KEKEVELLK 225 (250)
Q Consensus 166 afEksi~--~rs~aa~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~-~~~E~~~lk 225 (250)
-+||+|. +||.+.|....+|||+++..-++. +|++|+--|....|-|. .-.|+...|
T Consensus 154 nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~---ik~~F~~l~~cL~dREvaLl~EmdkVK 213 (302)
T PF07139_consen 154 NIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKK---IKQTFAELQSCLMDREVALLAEMDKVK 213 (302)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688885 466666888999999999887764 68888877777755553 344444444
No 125
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=38.08 E-value=1.8e+02 Score=22.12 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 025638 186 LKEHLQSLLNDNQILKKAVSI 206 (250)
Q Consensus 186 LKe~l~~l~~eN~iLKrAv~i 206 (250)
+-+++..|+.||.-||-|+.-
T Consensus 4 ~~~~l~~LL~EN~~LKealrQ 24 (68)
T PF11577_consen 4 MQQQLQELLQENQDLKEALRQ 24 (68)
T ss_dssp ---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 346888999999999988764
No 126
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.06 E-value=2.1e+02 Score=25.31 Aligned_cols=8 Identities=38% Similarity=0.517 Sum_probs=5.4
Q ss_pred HHHHHHHH
Q 025638 163 ILEVFERS 170 (250)
Q Consensus 163 vLEafEks 170 (250)
=|.|||-.
T Consensus 29 QL~AFeEv 36 (161)
T TIGR02894 29 QLSAFEEV 36 (161)
T ss_pred HHHHHHHH
Confidence 47788844
No 127
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=38.01 E-value=25 Score=34.23 Aligned_cols=40 Identities=15% Similarity=0.003 Sum_probs=29.9
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhc
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~ 81 (250)
.++|.+||.-= +..---..++|++||+|++.|-+-|+.=.
T Consensus 47 ~allk~LR~kT-gas~~ncKkALee~~gDl~~A~~~L~k~a 86 (340)
T KOG1071|consen 47 KALLKKLREKT-GASMVNCKKALEECGGDLVLAEEWLHKKA 86 (340)
T ss_pred HHHHHHHHHHc-CCcHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 46677777541 22334589999999999999999998743
No 128
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=37.71 E-value=72 Score=22.86 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH
Q 025638 185 SLKEHLQSLLNDNQILKKAVSI 206 (250)
Q Consensus 185 ~LKe~l~~l~~eN~iLKrAv~i 206 (250)
.||+|++.|-.+-.+|..+|.+
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554443
No 129
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=37.64 E-value=2.5e+02 Score=25.00 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~ 229 (250)
...|.-.||+++......+..+++=+.- -..+..-...++++|++++.
T Consensus 66 h~eEvr~Lr~~LR~~q~~~r~~~~klk~---~~~el~k~~~~l~~L~~L~~ 113 (194)
T PF15619_consen 66 HNEEVRVLRERLRKSQEQERELERKLKD---KDEELLKTKDELKHLKKLSE 113 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4557777777777777776666654322 22222334445555555543
No 130
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=37.36 E-value=4.9e+02 Score=26.96 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 184 ASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 184 ~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
..++.+.+.|..+-.-++.-+.-.-....+|...++|++-.+++...+.++...+++
T Consensus 348 ~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~ 404 (754)
T TIGR01005 348 DAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAAS 404 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444434444555556666666655555555555555444
No 131
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=36.45 E-value=2.5e+02 Score=29.24 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE-----------QKEKEVELLKLVISQYQDQARNLEVIF 242 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e-----------~~~~E~~~lkq~v~qYqeqir~LE~~N 242 (250)
+.+++..|+++...|-.++.-|++.+..+.++...+. ....|...|+.-...-.++|+.||-..
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi 229 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666665554433 333444455555555556666666443
No 132
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=36.28 E-value=2.4e+02 Score=25.68 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhhHHH----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 025638 182 EHASLKEHLQSLLNDNQI----LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLIL 245 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~i----LKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaL 245 (250)
|...||-++..+-.+... +...-...+.+..|.+....|++..+.-....++++-.||..+-.|
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~L 99 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAEL 99 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHH
Confidence 666677766554433322 2233345577888999999999999999999999999988665544
No 133
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=36.09 E-value=1.5e+02 Score=26.53 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
+..|...|+.+++.+.+|..-|+. ++++ ....+..+++-++.-++|+..++.
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~----~~~~------l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEV----YNEQ------LERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888877776 2222 222344444455555555555543
No 134
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=36.09 E-value=45 Score=27.91 Aligned_cols=35 Identities=34% Similarity=0.326 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLE 213 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e 213 (250)
+..|...||+++..|+.||+.|.==-----+|.-+
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 78899999999999999999886433333344444
No 135
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=35.08 E-value=3.6e+02 Score=24.81 Aligned_cols=24 Identities=17% Similarity=0.190 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKK 202 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKr 202 (250)
.+++....+.+.+.+..+...|+.
T Consensus 202 ~ek~~~~~~~k~e~~e~e~~~l~e 225 (297)
T PF02841_consen 202 KEKEIEEEQAKAEAAEKEKEKLEE 225 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566555555544
No 136
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=34.99 E-value=67 Score=24.13 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHhhHH
Q 025638 179 KELEHASLKEHLQSLLNDNQ 198 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~ 198 (250)
..+|...||+++..|...|.
T Consensus 12 VrEEVevLK~~I~eL~~~n~ 31 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNS 31 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544443
No 137
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=34.63 E-value=2.1e+02 Score=21.86 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 216 QKEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 216 ~~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
+..-++..|+.-+..|+..|+.++-
T Consensus 47 eLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 47 ELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666553
No 138
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=34.49 E-value=30 Score=33.17 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=22.9
Q ss_pred HHHHHhhchhhHHHHHHHHhhhccccc
Q 025638 59 VKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (250)
Q Consensus 59 le~aLe~cgndlDaAIksL~~L~L~sa 85 (250)
-.+||++++.|||.||+-|..--+..+
T Consensus 23 CKkAL~E~~Gd~EkAie~LR~kG~akA 49 (296)
T COG0264 23 CKKALEEANGDIEKAIEWLREKGIAKA 49 (296)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhchHhh
Confidence 578999999999999999998655444
No 139
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=34.41 E-value=4.1e+02 Score=30.47 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH-HHH-HHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 025638 179 KELEHASLKEHLQSLLNDNQILKK-AVS-IQHERHLEQE----QKEKEVELLKLVISQYQDQARNLEVIFLIL 245 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKr-Av~-iQh~R~~e~e----~~~~E~~~lkq~v~qYqeqir~LE~~NYaL 245 (250)
..++++.|.+.++.+..+-..|+| =-+ .||+ +++++ +...+++.|+..+.||++++.-++..|=.+
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~-~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQREQKALLQHE-QKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666665 111 2332 34444 334556777788888888888877665443
No 140
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=34.35 E-value=3e+02 Score=26.87 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 214 QEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 214 ~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
+....+++++|+..+.+.+++++..
T Consensus 384 ~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 384 KKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444443
No 141
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=34.29 E-value=2.8e+02 Score=27.14 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025638 212 LEQEQKEKEVELLKLVISQYQDQARNLEVI 241 (250)
Q Consensus 212 ~e~e~~~~E~~~lkq~v~qYqeqir~LE~~ 241 (250)
+.+....+...+|++.+.++++++..|+-.
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666667777777777777766543
No 142
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=33.92 E-value=2.9e+02 Score=26.79 Aligned_cols=59 Identities=24% Similarity=0.187 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 182 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
+...|+.++..+.++-.-++.-+...-..+.+|...++++...+.+...|.++....++
T Consensus 325 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 325 EIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544455555444455667778888887777777777777666553
No 143
>PF14645 Chibby: Chibby family
Probab=33.92 E-value=48 Score=27.30 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv 204 (250)
...|+..||++...|..||..||-=+
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~ 94 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKI 94 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888887533
No 144
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=33.81 E-value=1.1e+02 Score=28.56 Aligned_cols=39 Identities=28% Similarity=0.223 Sum_probs=23.6
Q ss_pred HHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 025638 192 SLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQ 230 (250)
Q Consensus 192 ~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~q 230 (250)
.+.+||..||.=.+-...++.+.+...+|.++||.++.-
T Consensus 70 ~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 70 DLALENEELKKELAELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444555555555555555666666677777777777643
No 145
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=33.68 E-value=68 Score=32.72 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh-------------------HH-HHHHHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLE-------------------QE-QKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e-------------------~e-~~~~E~~~lkq~v~qYqeqir~L 238 (250)
-..+++.|+.||..|.++-.-|+..++-|+.---- .- --+.+++++||.|+.-|=|+.+|
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l 102 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESL 102 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHH
Confidence 55688899999999999999999999888763211 00 01567889999999988888888
Q ss_pred Hhh
Q 025638 239 EVI 241 (250)
Q Consensus 239 E~~ 241 (250)
|-.
T Consensus 103 ~da 105 (514)
T PF11336_consen 103 EDA 105 (514)
T ss_pred hhH
Confidence 864
No 146
>PHA02047 phage lambda Rz1-like protein
Probab=33.54 E-value=1.8e+02 Score=24.03 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQ 232 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYq 232 (250)
-|+|.+.|+.||+.+-..-.-+-+.|.-=|.| .++.-+.+|+.+.+|+
T Consensus 32 ~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k------ae~~t~Ei~~aL~~n~ 79 (101)
T PHA02047 32 AHEEAKRQTARLEALEVRYATLQRHVQAVEAR------TNTQRQEVDRALDQNR 79 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhCC
Confidence 68889999999998877766666666666666 3334444555666554
No 147
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=33.50 E-value=1.9e+02 Score=25.04 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=27.4
Q ss_pred HHHHHHhhHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 189 HLQSLLNDNQILKKAVSI---QHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 189 ~l~~l~~eN~iLKrAv~i---Qh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE 239 (250)
.++.|+.-+..|+.++-. +.++++......+|+..|...+.++..++.+.+
T Consensus 3 ~~~~L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~ 56 (188)
T PF10018_consen 3 LAEDLIEADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEAR 56 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666533 233344455555555555555555555555543
No 148
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=33.43 E-value=4.4e+02 Score=25.31 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 025638 227 VISQYQDQARNL 238 (250)
Q Consensus 227 ~v~qYqeqir~L 238 (250)
+=..|++|++.|
T Consensus 91 i~~~~~~q~~~l 102 (332)
T TIGR01541 91 IDRTFRKQQRDL 102 (332)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 149
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=33.38 E-value=31 Score=29.87 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERH----LEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~----~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
+..|...|+.++.+|..||.-|.--.+--..++ .+....-.++.+|+-++..|++.+...
T Consensus 20 l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~ 83 (181)
T PF09311_consen 20 LEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIES 83 (181)
T ss_dssp HHHCCHHHHT------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhcccccccc
Confidence 777889999999999999999987766544443 333456778899999999998765543
No 150
>PF15463 ECM11: Extracellular mutant protein 11
Probab=33.25 E-value=1.5e+02 Score=24.62 Aligned_cols=61 Identities=20% Similarity=0.360 Sum_probs=42.3
Q ss_pred CChhhhHHH---HHHHHh-cCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHh
Q 025638 134 TDGSKWVDL---FVHEMM-SAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLN 195 (250)
Q Consensus 134 ~~g~eWVEl---~V~EM~-sAsd~dDARaRAsRvLEafEksi~~rs~aa~~kEn~~LKe~l~~l~~ 195 (250)
.+=.+|.+. |+.+.. -..-|.++|.-=.++-+.||+-|..|+.+ +..+-..|.+.|..+..
T Consensus 69 ls~~eWe~~Gd~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~ea-v~~~~~~l~~kL~~mk~ 133 (139)
T PF15463_consen 69 LSFDEWEEAGDWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEA-VRAQGEQLDRKLEKMKE 133 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 556677764 555544 33467888888888999999999999888 55555556666655543
No 151
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=33.17 E-value=1.8e+02 Score=29.77 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHH
Q 025638 220 EVELLKLVISQYQD 233 (250)
Q Consensus 220 E~~~lkq~v~qYqe 233 (250)
|--.|.|++.||||
T Consensus 144 ek~~lEq~leqeqe 157 (552)
T KOG2129|consen 144 EKLPLEQLLEQEQE 157 (552)
T ss_pred hhccHHHHHHHHHH
Confidence 33456789999995
No 152
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.69 E-value=6.3e+02 Score=26.97 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q 025638 202 KAVSIQHERHLEQEQKEKEVELLK 225 (250)
Q Consensus 202 rAv~iQh~R~~e~e~~~~E~~~lk 225 (250)
|=+..-+...+|++.+..++..|+
T Consensus 464 r~~~~~~~~~rei~~~~~~I~~L~ 487 (652)
T COG2433 464 REVRDKVRKDREIRARDRRIERLE 487 (652)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 153
>smart00338 BRLZ basic region leucin zipper.
Probab=32.63 E-value=1.3e+02 Score=21.55 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 025638 215 EQKEKEVELLKLVISQYQDQARNLEVIFLILT 246 (250)
Q Consensus 215 e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs 246 (250)
++...+++.|.......+.+|..|+..|..|.
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777666553
No 154
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=32.56 E-value=2.9e+02 Score=22.82 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH
Q 025638 155 DARGRAARILEVFERSIITNSKAS------KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ 216 (250)
Q Consensus 155 DARaRAsRvLEafEksi~~rs~aa------~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~ 216 (250)
+|.+.+..+-+++...+..++..+ +.+|...|......+.+++.-+.+.+--=+...||..+
T Consensus 22 ea~~s~~~l~~~l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGD 89 (121)
T PF06320_consen 22 EAIASAQALTNALVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGD 89 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445555566666677777666662 77788889999999999998888887777777776654
No 155
>PF04803 Cor1: Cor1/Xlr/Xmr conserved region; InterPro: IPR006888 Cor1 is a component of the chromosome core in the meiotic prophase chromosomes []. Xlr is a lymphoid cell specific protein []. Xmr is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes [].
Probab=32.26 E-value=1.9e+02 Score=24.31 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025638 217 KEKEVELLKLVISQYQDQARNLEVIFLI 244 (250)
Q Consensus 217 ~~~E~~~lkq~v~qYqeqir~LE~~NYa 244 (250)
.++.+..+|++..||=.-|..||-+++.
T Consensus 87 q~Qrlk~iK~l~eqflK~le~le~~~~~ 114 (130)
T PF04803_consen 87 QNQRLKAIKELHEQFLKSLEDLEKSHDN 114 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445788999999999999999998875
No 156
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=32.02 E-value=2.7e+02 Score=22.34 Aligned_cols=61 Identities=21% Similarity=0.271 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHH--------HHHHHHHHHhh
Q 025638 140 VDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQIL--------KKAVSIQHERH 211 (250)
Q Consensus 140 VEl~V~EM~sAsd~dDARaRAsRvLEafEksi~~rs~aa~~kEn~~LKe~l~~l~~eN~iL--------KrAv~iQh~R~ 211 (250)
++-+.....++.| .+ ....+-|+.+-..|...+.. +|..|..|-..|.-+ -|.-..||.+.
T Consensus 25 l~~l~~~~~t~~~-~~--~~~~~~l~~~~~~~~~~~~~--------ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L 93 (151)
T cd00179 25 LQKLHSQLLTAPD-AD--PELKQELESLVQEIKKLAKE--------IKGKLKELEESNEQNEALNGSSVDRIRKTQHSGL 93 (151)
T ss_pred HHHHHHHHHhcCC-ch--HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHH
Confidence 4445566666666 11 12344455555555555444 555666666555433 35566777775
No 157
>PRK11677 hypothetical protein; Provisional
Probab=31.91 E-value=70 Score=27.17 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025638 217 KEKEVELLKLVISQYQDQA 235 (250)
Q Consensus 217 ~~~E~~~lkq~v~qYqeqi 235 (250)
..+||.+.|.-+.||+.+|
T Consensus 34 le~eLe~~k~ele~YkqeV 52 (134)
T PRK11677 34 LQYELEKNKAELEEYRQEL 52 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554
No 158
>PRK09458 pspB phage shock protein B; Provisional
Probab=31.81 E-value=88 Score=24.42 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 216 QKEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 216 ~~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
+-.+.|++|-....+-||+|.|||.
T Consensus 39 ~d~~~L~~L~~~A~rm~~RI~tLE~ 63 (75)
T PRK09458 39 EEQQRLAQLTEKAERMRERIQALEA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688888888999999999995
No 159
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.42 E-value=3.4e+02 Score=25.79 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLIL 245 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaL 245 (250)
+..-...+|+.++.++.||.-|..-. .+.+.+|++.+.++..|.--.++..|..+.|+-.-|-|
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~el---eele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKEL---EELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 44556778888888888886554322 23344677777777777777777777777776555544
No 160
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=31.37 E-value=1e+02 Score=26.72 Aligned_cols=61 Identities=25% Similarity=0.196 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIF 242 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~N 242 (250)
+..+.......+..|..++.-|+.-+.--.+ +..++++-++.|+.-+.--|-+.-.||-..
T Consensus 107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~---~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 107 LEKELSEKERRLAELEAELAQLEEKIKDLEE---ELKEKNKANEILQDELQALQLQLNMLEEKL 167 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666666655433222 223334444444444444444444444443
No 161
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.34 E-value=1.7e+02 Score=30.15 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=25.6
Q ss_pred HHHHhhHHHHHHHHHH---------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 191 QSLLNDNQILKKAVSI---------QHERHLEQEQKEKEVELLKLVISQYQDQAR 236 (250)
Q Consensus 191 ~~l~~eN~iLKrAv~i---------Qh~R~~e~e~~~~E~~~lkq~v~qYqeqir 236 (250)
-..+++++-+||.|.+ |-.+.+-+|...+-.+.++|..++.+++||
T Consensus 465 ~E~i~~tg~~~revrdlE~qI~~E~~k~~l~slEkl~~Dyqairqen~~L~~~iR 519 (521)
T KOG1937|consen 465 LEMIRETGALKREVRDLESQIYVEEQKQYLKSLEKLHQDYQAIRQENDQLFSEIR 519 (521)
T ss_pred HHHHHHcchHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666654 444444455555555555555555555555
No 162
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=31.32 E-value=1.3e+02 Score=32.11 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHhh------------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 180 ELEHASLKEHLQSLLNDNQILKKAVS--IQHERH------------LEQEQKEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 180 ~kEn~~LKe~l~~l~~eN~iLKrAv~--iQh~R~------------~e~e~~~~E~~~lkq~v~qYqeqir~LE 239 (250)
.+|.+..-.-+..+-.+...|++||. ++..|+ ++.++...|+=.||-+++.=.|||-||=
T Consensus 537 r~ep~~i~nl~~~irdQikhL~~av~~t~e~srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLSTKREQIaTLR 610 (717)
T PF09730_consen 537 RKEPMNIYNLVAIIRDQIKHLQRAVDRTTELSRQRVASRSSASEADKDKEELQEQILKLKSLLSTKREQIATLR 610 (717)
T ss_pred ccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666777788888999996 455554 5667888899999999999999999983
No 163
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=31.07 E-value=3.7e+02 Score=23.73 Aligned_cols=104 Identities=18% Similarity=0.260 Sum_probs=49.3
Q ss_pred CChhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhh
Q 025638 134 TDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLN--DNQILKKAVSIQHERH 211 (250)
Q Consensus 134 ~~g~eWVEl~V~EM~sAsd~dDARaRAsRvLEafEksi~~rs~aa~~kEn~~LKe~l~~l~~--eN~iLKrAv~iQh~R~ 211 (250)
.|...=++.+++||-. ++..||.=-+++.- -+|.....-.. .......+.++....+. +..+=|.|+.-+..-.
T Consensus 23 EDP~~~l~q~irem~~--~l~~ar~~lA~~~a-~~k~~e~~~~~-~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~ 98 (219)
T TIGR02977 23 EDPEKMIRLIIQEMED--TLVEVRTTSARTIA-DKKELERRVSR-LEAQVADWQEKAELALSKGREDLARAALIEKQKAQ 98 (219)
T ss_pred cCHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4566789999999988 66666543222211 01111100000 11122222222222221 2223334444333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025638 212 LEQEQKEKEVELLKLVISQYQDQARNLEVI 241 (250)
Q Consensus 212 ~e~e~~~~E~~~lkq~v~qYqeqir~LE~~ 241 (250)
...+....++..++..|.+.+.+++.||..
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~k 128 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAK 128 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777777777777777643
No 164
>PRK09039 hypothetical protein; Validated
Probab=31.07 E-value=4.8e+02 Score=24.96 Aligned_cols=14 Identities=14% Similarity=-0.135 Sum_probs=7.6
Q ss_pred CCCCCCCCCcHHHHHhc
Q 025638 34 SLVRSGSDDPVSFLLQM 50 (250)
Q Consensus 34 sp~r~~~~~~l~~L~~l 50 (250)
..+| |..||+|-.|
T Consensus 13 ~~~w---pg~vd~~~~l 26 (343)
T PRK09039 13 VDYW---PGFVDALSTL 26 (343)
T ss_pred CCCC---chHHHHHHHH
Confidence 3455 4556665544
No 165
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=30.02 E-value=99 Score=23.86 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 216 QKEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 216 ~~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
+-.+.+++|-+....-+|.|.|||.
T Consensus 39 ~d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 39 DDQALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888888899999999995
No 166
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=29.93 E-value=4.5e+02 Score=26.20 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025638 198 QILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIF 242 (250)
Q Consensus 198 ~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~N 242 (250)
+-.|.+|-.++.+ -.++..||..-+.||+.+++.||.+.
T Consensus 47 ~rIkq~FekkNqk------sa~~i~~lqkkL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 47 ARIKQVFEKKNQK------SAQTIAQLQKKLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3345566555555 46788899999999999999999876
No 167
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=29.79 E-value=93 Score=23.86 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQS---LLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQA 235 (250)
Q Consensus 179 ~~kEn~~LKe~l~~---l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqi 235 (250)
+..+--.||-+++. +++++.=+-|-+.-|-...++ ..++++..++++..|++++
T Consensus 26 ~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~---Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 26 LDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEE---LEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Confidence 44445555555543 444444466667666665544 4446777777999998875
No 168
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=29.71 E-value=96 Score=27.90 Aligned_cols=39 Identities=33% Similarity=0.360 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025638 197 NQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVI 241 (250)
Q Consensus 197 N~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~ 241 (250)
.++|.++| +|+|- +.|+ +...|-+...+|+.++++||-+
T Consensus 157 ~qll~~vv--~~e~P-eLe~---~r~~L~~~~~~~k~~L~~lEd~ 195 (228)
T PF12781_consen 157 DQLLSIVV--KHERP-ELEE---QRNELLKEIAENKIQLKELEDQ 195 (228)
T ss_dssp HHHHHHHH--HHHCH-HHHH---HHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHH--HHHhH-HHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544 56652 3444 4555555788999999999865
No 169
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=28.87 E-value=4.4e+02 Score=28.00 Aligned_cols=31 Identities=32% Similarity=0.348 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 025638 216 QKEKEVELLKLVISQYQDQARNLEVIFLILT 246 (250)
Q Consensus 216 ~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs 246 (250)
++..|+.+|+.-+-+=+|+++.||-..-.|+
T Consensus 549 ~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556888888899999999999987654443
No 170
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=28.82 E-value=2.6e+02 Score=21.09 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILK 201 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLK 201 (250)
+..|+..|++++..+.+.|.+-.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~ 25 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHE 25 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577778888888777776543
No 171
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=28.72 E-value=5.3e+02 Score=24.68 Aligned_cols=79 Identities=16% Similarity=0.295 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-----hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 025638 157 RGRAARILEVFERSIITNSKA-----SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQY 231 (250)
Q Consensus 157 RaRAsRvLEafEksi~~rs~a-----a~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qY 231 (250)
|..=+-|=|-|-|+++..|-= ++.-+...||..|+.+-....-|+|=+. +..++++-..+...-|+--++..
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~---eK~~elEr~K~~~d~L~~e~~~L 159 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR---EKIRELERQKRAHDSLREELDEL 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777888998876644 1666777777777777777776666552 22233333333333333344444
Q ss_pred HHHHHHH
Q 025638 232 QDQARNL 238 (250)
Q Consensus 232 qeqir~L 238 (250)
+++|+..
T Consensus 160 re~L~~r 166 (302)
T PF09738_consen 160 REQLKQR 166 (302)
T ss_pred HHHHHHH
Confidence 5555443
No 172
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=28.64 E-value=5.9e+02 Score=28.54 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhhhh---h---hhHHHHHHHHHHHHHHhhHHH----------------HHHHHHHHHHhh--hhHHHH
Q 025638 162 RILEVFERSIITNSKA---S---KELEHASLKEHLQSLLNDNQI----------------LKKAVSIQHERH--LEQEQK 217 (250)
Q Consensus 162 RvLEafEksi~~rs~a---a---~~kEn~~LKe~l~~l~~eN~i----------------LKrAv~iQh~R~--~e~e~~ 217 (250)
+.|+.+-+++...-+. + +|.||+.|+.|...+-.+-.- =||+-+.-+-|. .-.+.-
T Consensus 298 eeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nv 377 (1265)
T KOG0976|consen 298 EELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENV 377 (1265)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555555554443332 1 788888887776544322111 123332222221 112334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 025638 218 EKEVELLKLVISQYQDQARNLEVIFLILT 246 (250)
Q Consensus 218 ~~E~~~lkq~v~qYqeqir~LE~~NYaLs 246 (250)
..|+|.|+.+-+.-||||.-|--.-+.|.
T Consensus 378 e~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 378 EEELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 56788899999999999987654444443
No 173
>COG5281 Phage-related minor tail protein [Function unknown]
Probab=28.61 E-value=3.8e+02 Score=29.37 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 203 AVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 203 Av~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
.-.+||.|+--.+ ..++.+|+...+|..|+-.|
T Consensus 528 ~~~~a~q~~l~~q---~~l~~~kk~~l~y~~Qla~~ 560 (833)
T COG5281 528 LKEEAKQRQLQEQ---KALLEHKKETLEYTSQLAEL 560 (833)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3455555542222 67888888899999888665
No 174
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=28.51 E-value=5.9e+02 Score=27.58 Aligned_cols=66 Identities=20% Similarity=0.132 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLILTL 247 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~ 247 (250)
++.....++.++..+.-||..|.+++ .+|-+-..+...+..+...-+.-.+.++..+|-.|-+|..
T Consensus 90 le~~l~e~~~~l~~~~~e~~~l~~~l---~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lky 155 (769)
T PF05911_consen 90 LEAKLAELSKRLAESAAENSALSKAL---QEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKY 155 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55567778889999999999999988 4565556666666666666666666677777777766653
No 175
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=28.33 E-value=7.6e+02 Score=26.40 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHHHHh
Q 025638 179 KELEHASLKEHLQSLLN 195 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~ 195 (250)
+++|+.+|+.+++.+.+
T Consensus 448 ~k~eie~L~~~l~~~~r 464 (652)
T COG2433 448 LKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 176
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=28.17 E-value=58 Score=28.36 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=23.4
Q ss_pred CHHHHHHHHhhch--hhHHHHHHHHhhhc
Q 025638 55 DPEVVKSVLGEHD--NKIEDAIDRLRVLS 81 (250)
Q Consensus 55 d~q~le~aLe~cg--ndlDaAIksL~~L~ 81 (250)
+|.|+|.+|.+|- |||-.|||-|--+.
T Consensus 83 ~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 83 SPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5899999999995 89999999987763
No 177
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=28.06 E-value=1.6e+02 Score=22.42 Aligned_cols=42 Identities=24% Similarity=0.086 Sum_probs=27.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 025638 207 QHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLILTLL 248 (250)
Q Consensus 207 Qh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~h 248 (250)
-..|.++.+.+++++.+|++..-+=..-++.|+..-+.+.+|
T Consensus 25 l~~~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~~~~r~~l~ 66 (80)
T PF11488_consen 25 LESRFKEIDSKDKELEELYQQDCKTEMEVKMLETQDPRDELN 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHh
Confidence 456777777778888777766666556666666655544433
No 178
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=27.93 E-value=2.2e+02 Score=20.30 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 214 QEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 214 ~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
+...+.++.++++-..+.++++..|
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444
No 179
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=27.73 E-value=4.4e+02 Score=27.57 Aligned_cols=86 Identities=16% Similarity=0.106 Sum_probs=59.5
Q ss_pred HHHhcCCCchHHHHHHH----HHHHHHHHHHHhhhhh---h---hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhH
Q 025638 145 HEMMSAADLDDARGRAA----RILEVFERSIITNSKA---S---KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQ 214 (250)
Q Consensus 145 ~EM~sAsd~dDARaRAs----RvLEafEksi~~rs~a---a---~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~ 214 (250)
.+|..+.-.-|-|-||. -.++++++........ . ++.|.+.-.++++.|....--||.-|..|---..++
T Consensus 291 ~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~f 370 (622)
T COG5185 291 MKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQF 370 (622)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHH
Confidence 34445555555555553 3566666666554433 1 666777777788888888889999999888888889
Q ss_pred HHHHHHHHHHHHHHHH
Q 025638 215 EQKEKEVELLKLVISQ 230 (250)
Q Consensus 215 e~~~~E~~~lkq~v~q 230 (250)
+.+++|..+|-.-+..
T Consensus 371 e~mn~Ere~L~reL~~ 386 (622)
T COG5185 371 ELMNQEREKLTRELDK 386 (622)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998887655543
No 180
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=27.44 E-value=3.3e+02 Score=24.00 Aligned_cols=18 Identities=11% Similarity=0.038 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025638 221 VELLKLVISQYQDQARNL 238 (250)
Q Consensus 221 ~~~lkq~v~qYqeqir~L 238 (250)
++.++..+...+.++..+
T Consensus 111 ~~~~~~~l~~~~~~l~~~ 128 (322)
T TIGR01730 111 VEAAQADLEAAKASLASA 128 (322)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 181
>PLN03025 replication factor C subunit; Provisional
Probab=27.28 E-value=68 Score=29.45 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=37.6
Q ss_pred cccccCCCCCCCCCC---CCcHHHHHhcC----CCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 26 RSRCSTFGSLVRSGS---DDPVSFLLQMF----PDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 26 R~Rcsss~sp~r~~~---~~~l~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
|.||- .++|.+ +.+...|..++ =.++++.++..++.||.|+-.||..|..
T Consensus 147 ~SRc~----~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~ 203 (319)
T PLN03025 147 QSRCA----IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQA 203 (319)
T ss_pred HHhhh----cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55673 466665 45566666553 3578999999999999999999998864
No 182
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=27.03 E-value=3.1e+02 Score=21.53 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=23.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 203 AVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 203 Av~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE 239 (250)
.....-++..+......++..|+.-+.+++++|..+.
T Consensus 72 e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 72 EKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666677777777777777777776553
No 183
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=26.91 E-value=7e+02 Score=25.91 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHhhHH
Q 025638 179 KELEHASLKEHLQSLLNDNQ 198 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~ 198 (250)
++.|...|..+|...-+++.
T Consensus 439 f~~Ec~aL~~rL~~aE~ek~ 458 (518)
T PF10212_consen 439 FYAECRALQKRLESAEKEKE 458 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77788777777776655443
No 184
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=26.86 E-value=2.1e+02 Score=27.51 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHh
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVS-IQHER 210 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~-iQh~R 210 (250)
+.++|..||+|+..|-+|..-||.+|. .+|.|
T Consensus 260 Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 260 LEKRNEELKDQASELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888999999999999999999999985 45544
No 185
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=26.57 E-value=3.4e+02 Score=25.49 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHh
Q 025638 227 VISQYQDQARNLEV 240 (250)
Q Consensus 227 ~v~qYqeqir~LE~ 240 (250)
.+-|.|.+++.-|+
T Consensus 89 ~IQqLqk~LK~aE~ 102 (272)
T KOG4552|consen 89 VIQQLQKNLKSAEV 102 (272)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555544443
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.26 E-value=4.6e+02 Score=24.01 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEK 219 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~ 219 (250)
++.|...|+.+++.+.++..-++ .-|-++..+.+.+.+
T Consensus 66 lq~ev~~LrG~~E~~~~~l~~~~---~rq~~~y~dld~r~~ 103 (263)
T PRK10803 66 NQSDIDSLRGQIQENQYQLNQVV---ERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 77788888888888777644333 345555555555443
No 187
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=26.24 E-value=2.8e+02 Score=21.49 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025638 221 VELLKLVISQYQDQARNLE 239 (250)
Q Consensus 221 ~~~lkq~v~qYqeqir~LE 239 (250)
+..+|.=+.--+.+||+|.
T Consensus 59 l~~mK~DLd~i~krir~lk 77 (88)
T PF10241_consen 59 LKEMKKDLDYIFKRIRSLK 77 (88)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555543
No 188
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.16 E-value=2e+02 Score=22.32 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv 204 (250)
+..+...||.+...+..+|..|+.-+
T Consensus 73 l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 73 LMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66677777777777777777776543
No 189
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=26.09 E-value=59 Score=29.11 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.9
Q ss_pred HHHHHHHhhchhhHHHHHHHHhhhc
Q 025638 57 EVVKSVLGEHDNKIEDAIDRLRVLS 81 (250)
Q Consensus 57 q~le~aLe~cgndlDaAIksL~~L~ 81 (250)
+-|.++|++||.+|.+.-++||-.|
T Consensus 145 EhIqrvl~e~~~NiSeTARrL~MHR 169 (182)
T COG4567 145 EHIQRVLEECEGNISETARRLNMHR 169 (182)
T ss_pred HHHHHHHHHhCCCHHHHHHHhhhhH
Confidence 4589999999999999999998653
No 190
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=26.07 E-value=2.2e+02 Score=22.28 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=24.7
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 025638 171 IITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQ 207 (250)
Q Consensus 171 i~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKrAv~iQ 207 (250)
|.++-.+...++...|+..++.+-.+|.-|...|.-|
T Consensus 70 i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 70 IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444456666777888888888888887766544
No 191
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=26.01 E-value=1.1e+02 Score=21.97 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025638 215 EQKEKEVELLKLVISQYQ 232 (250)
Q Consensus 215 e~~~~E~~~lkq~v~qYq 232 (250)
+.++.+|+.|+..++||+
T Consensus 9 ~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 9 EALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445666666666665
No 192
>PRK04863 mukB cell division protein MukB; Provisional
Probab=25.92 E-value=9.3e+02 Score=28.05 Aligned_cols=87 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-
Q 025638 153 LDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS- 229 (250)
Q Consensus 153 ~dDARaRAsRvLEafEksi~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~- 229 (250)
..+.-.....-|+-++..+...-.. . +..|...+++++..+..+..-+..++..+..+...|+...+++..-|++|.
T Consensus 353 l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~ 432 (1486)
T PRK04863 353 YQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGL 432 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q ss_pred -------------HHHHHHHHHH
Q 025638 230 -------------QYQDQARNLE 239 (250)
Q Consensus 230 -------------qYqeqir~LE 239 (250)
+|++++..++
T Consensus 433 ~~~SdEeLe~~LenF~aklee~e 455 (1486)
T PRK04863 433 PDLTADNAEDWLEEFQAKEQEAT 455 (1486)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
No 193
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=25.71 E-value=4.3e+02 Score=26.13 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 025638 179 KELEHASLKEHLQSLLND 196 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~e 196 (250)
.+.++..|+.++..+..+
T Consensus 65 ~~~~~~~L~~ql~~~~~~ 82 (390)
T PRK10920 65 QTATNDALANQLTALQKA 82 (390)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455677777777776555
No 194
>PF11236 DUF3037: Protein of unknown function (DUF3037); InterPro: IPR021398 This bacterial family of proteins has no known function.
Probab=25.69 E-value=66 Score=26.08 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.7
Q ss_pred HHHHhcCCCCCHHHHHHHHhhch
Q 025638 45 SFLLQMFPDVDPEVVKSVLGEHD 67 (250)
Q Consensus 45 ~~L~~lFP~md~q~le~aLe~cg 67 (250)
..|+++||+.|.+.++++|+.-.
T Consensus 39 ~Rl~~f~~~~D~~~~~~~l~~~~ 61 (118)
T PF11236_consen 39 KRLRAFFPELDIDLVRAALEAFE 61 (118)
T ss_pred HHHHHhCccCCHHHHHHHHHHHH
Confidence 89999999999999999987654
No 195
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=25.68 E-value=66 Score=23.08 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=18.7
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHHHh
Q 025638 145 HEMMSAADLDDARGRAARILEVFERSIIT 173 (250)
Q Consensus 145 ~EM~sAsd~dDARaRAsRvLEafEksi~~ 173 (250)
.||...--+.- .=|.+||+-|.|+|..
T Consensus 20 Deli~~~~I~p--~La~kVL~~FDksi~~ 46 (49)
T PF02268_consen 20 DELIQEGKITP--QLAMKVLEQFDKSINE 46 (49)
T ss_dssp HHHHHTTSS-H--HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCH--HHHHHHHHHHHHHHHH
Confidence 45555544442 4589999999999976
No 196
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=25.67 E-value=73 Score=24.47 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=17.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhch
Q 025638 44 VSFLLQMFPDVDPEVVKSVLGEHD 67 (250)
Q Consensus 44 l~~L~~lFP~md~q~le~aLe~cg 67 (250)
+--|..+||+++|..+.+++.+--
T Consensus 22 fkD~~k~~pd~k~R~vKKi~~~LV 45 (67)
T PF08679_consen 22 FKDFYKAFPDAKPREVKKIVNELV 45 (67)
T ss_dssp HHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCcCHHHHHHHHHHHH
Confidence 445778899999999999886543
No 197
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.66 E-value=4.6e+02 Score=23.01 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q 025638 182 EHASLKEHLQSLLNDNQILKKAVS 205 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKrAv~ 205 (250)
|...+-++++.|..++.-|+.=+.
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554333
No 198
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=25.50 E-value=8e+02 Score=25.75 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKK 202 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKr 202 (250)
++.|+..+++++..|..+...||.
T Consensus 20 lk~e~a~~qqr~~qmseev~~L~e 43 (617)
T PF15070_consen 20 LKEESAQWQQRMQQMSEEVRTLKE 43 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666555555555543
No 199
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.36 E-value=6.5e+02 Score=24.61 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhh--------hhhh---hhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 025638 153 LDDARGRAARILEVFERSIITN--------SKAS---KELEHASLKEHLQSLLNDNQILKKAVS 205 (250)
Q Consensus 153 ~dDARaRAsRvLEafEksi~~r--------s~aa---~~kEn~~LKe~l~~l~~eN~iLKrAv~ 205 (250)
+.++...+..-++-+++.+.-. |... ...+.+.|+.++..+-.+-..|..+..
T Consensus 260 l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 260 LNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888888888775533 1111 233445555566666555555555555
No 200
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=25.20 E-value=5.7e+02 Score=26.69 Aligned_cols=56 Identities=25% Similarity=0.233 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 183 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
...|+.++..|-++..-++.-+.-.-+.+++|.+..+++.-.+.+..++-++...+
T Consensus 341 v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~ 396 (726)
T PRK09841 341 YRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQEL 396 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333333444444444444444444433333333333
No 201
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=25.19 E-value=1.4e+02 Score=23.17 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 217 KEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 217 ~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
-.+.+++|-+....-+|+|.|||.
T Consensus 40 d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 40 DEQRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888899999999995
No 202
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.19 E-value=1.9e+02 Score=26.66 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025638 216 QKEKEVELLKLVISQYQDQARNLEVIFL 243 (250)
Q Consensus 216 ~~~~E~~~lkq~v~qYqeqir~LE~~NY 243 (250)
+..+|+.++++.+...+.+|.+|.-.|-
T Consensus 97 ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 97 ELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666655553
No 203
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=25.17 E-value=2.2e+02 Score=25.93 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 025638 181 LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQ 230 (250)
Q Consensus 181 kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~q 230 (250)
+||.-|.+.++.+-.|+..|| +...++.+...+++.|..+|..
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk-------~en~~L~elae~~~~la~~ie~ 167 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLK-------EENEELKELAEHVQYLAEVIER 167 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
No 204
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=25.15 E-value=2.4e+02 Score=19.59 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 215 EQKEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 215 e~~~~E~~~lkq~v~qYqeqir~LE 239 (250)
+++.++++.|+.-..+-+.+|..|+
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666666665554
No 205
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=24.97 E-value=3.7e+02 Score=23.90 Aligned_cols=42 Identities=26% Similarity=0.185 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Q 025638 199 ILKKAVSIQHERHLEQEQKEK----EVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 199 iLKrAv~iQh~R~~e~e~~~~----E~~~lkq~v~qYqeqir~LE~ 240 (250)
+|...|..|+.-.+..|..++ -+..+|+.|-+-|.+|-+||.
T Consensus 15 ~l~~i~q~~~~ll~~~e~~~~lL~l~v~gik~~V~~L~aRV~alE~ 60 (204)
T PF00517_consen 15 LLNGIVQQQSNLLRAQEAQQHLLQLTVWGIKQGVKQLQARVLALER 60 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHHH
Confidence 344445555554444443333 344888899999999999986
No 206
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.73 E-value=1.8e+02 Score=33.04 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhccccC
Q 025638 185 SLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELL-KLVISQYQDQARNLEVIFLILTLLG 249 (250)
Q Consensus 185 ~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~l-kq~v~qYqeqir~LE~~NYaLs~hl 249 (250)
.|+|.++.|..+ |+.|=+-|-. |++++.+|...| |++--.|.|+||.+|..|-++.-||
T Consensus 368 ElReEve~lr~q---L~~ae~~~~~---el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L 427 (1714)
T KOG0241|consen 368 ELREEVEKLREQ---LEQAEAMKLP---ELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQL 427 (1714)
T ss_pred HHHHHHHHHHHH---Hhhhhhccch---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445555554433 3334333333 455666665554 6677789999999999998887665
No 207
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=24.70 E-value=2.7e+02 Score=24.49 Aligned_cols=42 Identities=24% Similarity=0.529 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025638 188 EHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIF 242 (250)
Q Consensus 188 e~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~N 242 (250)
.++..|.+||.-|+-++ ++-+.-+.. +.+.|++|+..|-.++
T Consensus 70 ~qi~~Lq~EN~eL~~~l----------eEhq~alel---IM~KyReq~~~l~~~~ 111 (181)
T PF05769_consen 70 RQIRQLQQENRELRQSL----------EEHQSALEL---IMSKYREQMSQLMMAS 111 (181)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHH---HHHHHHHHHHHHHHHh
No 208
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=24.66 E-value=5.4e+02 Score=23.46 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 184 ASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQAR 236 (250)
Q Consensus 184 ~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir 236 (250)
.+|.+.+..+-.+-.=++++++-++.+++.++. ++.++......|+++.+
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~---~~~~~~~~~~k~e~~A~ 76 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLER---KLEEAQARAEKLEEKAE 76 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 666777777777777777777777777766655 34444446666666654
No 209
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=24.61 E-value=2.8e+02 Score=23.51 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=25.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 206 IQHERHLEQEQKEKEVELLKLVISQYQDQARN 237 (250)
Q Consensus 206 iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~ 237 (250)
|=.+|..+.+...++.+..+..+.+|.+++..
T Consensus 36 vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~ 67 (134)
T PRK10328 36 VTKERREEEEQQQRELAERQEKINTWLELMKA 67 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777788888888889999888874
No 210
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.59 E-value=7.4e+02 Score=25.03 Aligned_cols=65 Identities=14% Similarity=0.030 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 025638 158 GRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVEL 223 (250)
Q Consensus 158 aRAsRvLEafEksi~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~ 223 (250)
.|.+-.+.++=+...++..+ +.+.-..|+..-..+..|..=|+.+..-|.++++..+-..+|.+.
T Consensus 146 ~R~ai~~~~l~~~~~~~i~~-l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk 210 (420)
T COG4942 146 VRLAIYYGALNPARAERIDA-LKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK 210 (420)
T ss_pred HHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554444 555555666666667777777888888888887777655555544
No 211
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=24.52 E-value=4.3e+02 Score=22.33 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025638 211 HLEQEQKEKEVELLKLVISQYQDQARNLEVI 241 (250)
Q Consensus 211 ~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~ 241 (250)
+.||+....++..|+.-|..++.++..||..
T Consensus 144 l~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 144 LRDYDKTKEEVEELRKEIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3478899999999999999999999988864
No 212
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.47 E-value=3.6e+02 Score=23.68 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHHHhhHH
Q 025638 179 KELEHASLKEHLQSLLNDNQ 198 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~ 198 (250)
+-.+...|++++..|..+-.
T Consensus 108 ~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 213
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=24.42 E-value=77 Score=27.52 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=37.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 025638 190 LQSLLNDNQILKKAVSIQHERHLEQEQK-EKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 190 l~~l~~eN~iLKrAv~iQh~R~~e~e~~-~~E~~~lkq~v~qYqeqir~LE 239 (250)
.+.|+.+-.-|.|+++.|+-|.++.... .+-..+|-+-+.+|||-.|.|.
T Consensus 72 aEkL~~Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~hqe~erRL~ 122 (173)
T PF07445_consen 72 AEKLVAQIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQHQEYERRLL 122 (173)
T ss_pred HHHHHHHHHHHHHHHHhccCccCCccccccCchhHHHHHHHHHHHHHHHHH
Confidence 4577788888899999999888766551 2445666778888888888775
No 214
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=24.39 E-value=1.3e+03 Score=27.90 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=61.1
Q ss_pred CChhhhHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 025638 134 TDGSKWVDLFVHEMMS-AADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHER 210 (250)
Q Consensus 134 ~~g~eWVEl~V~EM~s-Asd~dDARaRAsRvLEafEksi~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R 210 (250)
+.-.+|--.|..+... ...++++|.+...=|+..+..+..-... + +.+=...|...++.+.-+..-...+++-....
T Consensus 1357 ~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k 1436 (1930)
T KOG0161|consen 1357 AELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKK 1436 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899888888876 8899999999999999999998876555 2 54444556666666666666666666666666
Q ss_pred hhhHHH
Q 025638 211 HLEQEQ 216 (250)
Q Consensus 211 ~~e~e~ 216 (250)
++-++.
T Consensus 1437 ~k~f~k 1442 (1930)
T KOG0161|consen 1437 QKRFEK 1442 (1930)
T ss_pred HHHHHH
Confidence 555553
No 215
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=24.36 E-value=7.4e+02 Score=28.19 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=21.5
Q ss_pred HHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 025638 192 SLLNDNQILKKAVSIQHERHLEQEQKEKEVELLK 225 (250)
Q Consensus 192 ~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lk 225 (250)
+-..+|+.+.|.+.-||.+.+++++.....+.|+
T Consensus 461 rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknln 494 (1195)
T KOG4643|consen 461 RQSLENEELDQLLSLQDQLEAETEELLNQIKNLN 494 (1195)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344677777777777877777776444444443
No 216
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=24.29 E-value=5e+02 Score=24.96 Aligned_cols=85 Identities=14% Similarity=0.161 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHH------------------HHHHHHhh
Q 025638 137 SKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKE------------------HLQSLLND 196 (250)
Q Consensus 137 ~eWVEl~V~EM~sAsd~dDARaRAsRvLEafEksi~~rs~a-a-~~kEn~~LKe------------------~l~~l~~e 196 (250)
.+|.+-+ ++ |+...+.+..+++..-|.+..+.|...-.. . ++.++..++. .+....++
T Consensus 58 d~~~~kl-~~-Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~ 135 (301)
T PF06120_consen 58 DELKEKL-KE-MSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRK 135 (301)
T ss_pred HHHHHHH-Hh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence 4455443 33 456677777777777777777776653332 1 2222111111 12344555
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 025638 197 NQILKKAVSIQHERHLEQEQKEKEVEL 223 (250)
Q Consensus 197 N~iLKrAv~iQh~R~~e~e~~~~E~~~ 223 (250)
...+.+.++..++|...-..+..+.|.
T Consensus 136 la~~t~~L~~~~~~l~q~~~k~~~~q~ 162 (301)
T PF06120_consen 136 LAEATRELAVAQERLEQMQSKASETQA 162 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666665555554444443
No 217
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.23 E-value=1.3e+02 Score=24.78 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 211 HLEQEQKEKEVELLKLVISQYQDQARN 237 (250)
Q Consensus 211 ~~e~e~~~~E~~~lkq~v~qYqeqir~ 237 (250)
.++.....+||.+.|+-+.+|+.+|..
T Consensus 24 ~~~q~~l~~eL~~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 24 QQKQAKLEQELEQAKQELEQYKQEVND 50 (128)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
No 218
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=24.23 E-value=2.6e+02 Score=25.35 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhhhh-hhhH--HHHHHHHHHHHHHhhH--HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHH
Q 025638 162 RILEVFERSIITNSKA-SKEL--EHASLKEHLQSLLNDN--QILKKAVSIQHERHLE-QEQKEKEVELLKLVISQYQDQ 234 (250)
Q Consensus 162 RvLEafEksi~~rs~a-a~~k--En~~LKe~l~~l~~eN--~iLKrAv~iQh~R~~e-~e~~~~E~~~lkq~v~qYqeq 234 (250)
.+.+.||.++..+..- .+++ .+..+...++.++++- .+-.-|.+||+.|.-. .....++++.+++.+..|+++
T Consensus 180 ~a~Dl~E~~~as~~~y~~l~~~f~~~~~l~~~~~~l~~~a~~l~~ia~ai~~~~~~~~~~~l~~~l~~l~~~l~~~~~~ 258 (284)
T PF12805_consen 180 EAVDLFERALASHYDYEELREQFKHSDVLFRFQRLLEQLAQALRQIAQAILRGRPYHHRNRLKRALEALEESLEFLRQQ 258 (284)
T ss_pred HHHHHHHHHHhccccHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 3456777777766544 2222 2444444555555442 3344477888666554 345777888888888888777
No 219
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=24.21 E-value=5.2e+02 Score=23.07 Aligned_cols=12 Identities=0% Similarity=0.172 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 025638 227 VISQYQDQARNL 238 (250)
Q Consensus 227 ~v~qYqeqir~L 238 (250)
-+.+++++|...
T Consensus 161 ~l~~l~~ei~~~ 172 (176)
T PF12999_consen 161 KLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 220
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.20 E-value=6.7e+02 Score=24.42 Aligned_cols=88 Identities=22% Similarity=0.280 Sum_probs=43.5
Q ss_pred CChhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH--------------HHHhhHH-
Q 025638 134 TDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQ--------------SLLNDNQ- 198 (250)
Q Consensus 134 ~~g~eWVEl~V~EM~sAsd~dDARaRAsRvLEafEksi~~rs~aa~~kEn~~LKe~l~--------------~l~~eN~- 198 (250)
-.|.-.-|+|-+|..-.-..--|-+|+--++|+ ||......-+ ++.+...++.+|. +-..|--
T Consensus 74 ~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~-Ekvlk~aIq~-i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr 151 (338)
T KOG3647|consen 74 QRGTTICEMLSKELLHKESLMSAAQRPLELLEV-EKVLKSAIQA-IQVRLQSSRAQLNNVASDEAALGSKIERRKAELER 151 (338)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHcCCccHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456666676666665555555555555444443 3433332222 3333333333333 3222221
Q ss_pred HHHHHHHHHHHh---hhhHHHHHHHHHH
Q 025638 199 ILKKAVSIQHER---HLEQEQKEKEVEL 223 (250)
Q Consensus 199 iLKrAv~iQh~R---~~e~e~~~~E~~~ 223 (250)
.=||--+.|--| +-|||....|||.
T Consensus 152 ~rkRle~LqsiRP~~MdEyE~~EeeLqk 179 (338)
T KOG3647|consen 152 TRKRLEALQSIRPAHMDEYEDCEEELQK 179 (338)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 124555555555 3477777777777
No 221
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=23.84 E-value=1.8e+02 Score=25.33 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=30.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025638 204 VSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLI 244 (250)
Q Consensus 204 v~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYa 244 (250)
|.|=-.=.+|++...+||..+|..|.++-+++-.||..--.
T Consensus 19 f~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~ 59 (159)
T PF05384_consen 19 FEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQ 59 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433345688888888888888888888888888875433
No 222
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=23.73 E-value=1.7e+02 Score=23.04 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025638 219 KEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 219 ~E~~~lkq~v~qYqeqir~LE 239 (250)
.|++.-|.=++.||.++|.||
T Consensus 8 ~eieK~k~Kiae~Q~rlK~Le 28 (83)
T PF14193_consen 8 AEIEKTKEKIAELQARLKELE 28 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 223
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.63 E-value=4.7e+02 Score=25.24 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=62.4
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHhhhhh-h-----hhHHHHHHHHHHHHHHhhHHH------HHHHHHHHHHhhhhHHH
Q 025638 149 SAADLDDARGRAARILEVFERSIITNSKA-S-----KELEHASLKEHLQSLLNDNQI------LKKAVSIQHERHLEQEQ 216 (250)
Q Consensus 149 sAsd~dDARaRAsRvLEafEksi~~rs~a-a-----~~kEn~~LKe~l~~l~~eN~i------LKrAv~iQh~R~~e~e~ 216 (250)
....-|||=+|.-|+||.+-.....+-+- . ..++.+.|++.++.....++. |..++.+=+.- .+
T Consensus 253 ~~gryddAvarlYR~lEl~~Q~rL~~~g~~t~~~~~~~~~pe~lr~~~~~~~~~~~~~~~~l~L~~~y~LL~~l----~d 328 (379)
T PF09670_consen 253 AQGRYDDAVARLYRALELLAQHRLARYGIDTSDPDLLEKLPEALRDRYERKRGDKGFGKIKLGLFEAYELLKAL----GD 328 (379)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccccccchHHHHHHHHHHhccCCccceeecHHHHHHHHHHc----CC
Confidence 35679999999999999999888874333 1 456677899999998888888 66666654333 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccC
Q 025638 217 KEKEVELLKLVISQYQDQARNLEVIFLILTLLG 249 (250)
Q Consensus 217 ~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~hl 249 (250)
. + .+.....+..=..-|+..|+++=-|+
T Consensus 329 ~---l--~~~~~~~~~~l~~~~~~RN~SILAHG 356 (379)
T PF09670_consen 329 P---L--GQRFYDNLNKLKGLLQKRNQSILAHG 356 (379)
T ss_pred H---H--HHHHHHHHHHHHHHHHHhcccchhcC
Confidence 1 1 11123333333445788999987775
No 224
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.61 E-value=4.5e+02 Score=22.13 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARN 237 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~ 237 (250)
+++-+..|..+++.+-.+-.-+|..+-.=+.+....+..++.++.|-.-+.+....++.
T Consensus 40 L~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 40 LQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 55555555666666666655666666655666555666666666666666666555544
No 225
>PRK14127 cell division protein GpsB; Provisional
Probab=23.43 E-value=1.6e+02 Score=24.23 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 216 QKEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 216 ~~~~E~~~lkq~v~qYqeqir~LE 239 (250)
+...|+..|+.-+.+|+.|+...+
T Consensus 48 ~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 48 ELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 344566667777777777777654
No 226
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=23.36 E-value=77 Score=28.97 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=36.5
Q ss_pred cccccCCCCCCCCCC---CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 26 RSRCSTFGSLVRSGS---DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 26 R~Rcsss~sp~r~~~---~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
|+||. .++|.+ +.+...|...|+.+++..+++++.-||.....|++-+.+
T Consensus 141 ~SRc~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~~~a~~~~~~ 193 (313)
T PRK05564 141 KSRCQ----IYKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAFSDGIPGKVEKFIED 193 (313)
T ss_pred Hhhce----eeeCCCcCHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 77884 344544 556677888888888888888888888877777765543
No 227
>PRK14127 cell division protein GpsB; Provisional
Probab=23.28 E-value=1e+02 Score=25.35 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHHHhhH
Q 025638 179 KELEHASLKEHLQSLLNDN 197 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN 197 (250)
+.+|+..||+++..|-.+.
T Consensus 42 l~~e~~~Lk~e~~~l~~~l 60 (109)
T PRK14127 42 FQKEIEELQQENARLKAQV 60 (109)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555444444333
No 228
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=22.98 E-value=3.1e+02 Score=20.08 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025638 215 EQKEKEVELLKLVISQY 231 (250)
Q Consensus 215 e~~~~E~~~lkq~v~qY 231 (250)
+...++-..|+.++.||
T Consensus 43 ~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 43 ESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34445555666688887
No 229
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=22.95 E-value=5.3e+02 Score=22.71 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVS 205 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~ 205 (250)
..++....|+++..+...+.-.+..+.
T Consensus 82 ~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 82 LRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555544444444444433
No 230
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=22.94 E-value=5.8e+02 Score=26.59 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHE-RHLEQEQKEKEVELLKLVISQYQDQARNLEVI 241 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~-R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~ 241 (250)
.++.+..+.+++..+..++.-+.-....+.. -+.-..+....+.+|...+.++|.|+.+||..
T Consensus 344 ~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~ 407 (656)
T PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQ 407 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544333222222211 11122334555666666777777777777654
No 231
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=22.87 E-value=6e+02 Score=23.34 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=58.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-----------HHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHH
Q 025638 151 ADLDDARGRAARILEVFERSIITNSKASKELEHASLK-----------EHLQSLLNDNQILKKAVSIQHERHLEQEQKEK 219 (250)
Q Consensus 151 sd~dDARaRAsRvLEafEksi~~rs~aa~~kEn~~LK-----------e~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~ 219 (250)
..+.+||.++.-+-.+|+.+|..|+.. |+|...|= ++...|.+.-..+.+++.-=.+...+.|...+
T Consensus 46 ~~l~~~r~~~~~aK~~Y~~ai~~Rs~s--QrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e 123 (207)
T PF05546_consen 46 DELEAARQEVREAKAAYDDAIQQRSSS--QREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVE 123 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999987 44433321 34667888888888888877777777776554
Q ss_pred HHH-H-HHHHHHHHHH
Q 025638 220 EVE-L-LKLVISQYQD 233 (250)
Q Consensus 220 E~~-~-lkq~v~qYqe 233 (250)
+.+ . .+.++..|-|
T Consensus 124 ~~~~~L~~~Il~RYHE 139 (207)
T PF05546_consen 124 EAFDDLMRAILTRYHE 139 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 443 2 3456667754
No 232
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=22.73 E-value=2.1e+02 Score=24.46 Aligned_cols=60 Identities=22% Similarity=0.219 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhccc
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE--VIFLILTL 247 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE--~~NYaLs~ 247 (250)
+.+....|+++++.+-......+..|.. |+.+. +..|+++|-|-...-+.|| +.+|++++
T Consensus 20 Lekqi~~l~~kiek~r~n~~drl~siR~-------ye~Ms--~~~l~~llkqLEkeK~~Le~qlk~~e~rL 81 (129)
T PF15372_consen 20 LEKQIIILREKIEKIRGNPSDRLSSIRR-------YEQMS--VESLNQLLKQLEKEKRSLENQLKDYEWRL 81 (129)
T ss_pred HHHHHHHHHHHHHHHhCCCccccHHHHH-------Hhhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777888888887777776666655 55542 3566667766666666664 45666553
No 233
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=22.60 E-value=69 Score=24.01 Aligned_cols=13 Identities=46% Similarity=0.739 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHH
Q 025638 158 GRAARILEVFERS 170 (250)
Q Consensus 158 aRAsRvLEafEks 170 (250)
+||+|+++.+|+.
T Consensus 35 nrAariid~LE~~ 47 (65)
T PF09397_consen 35 NRAARIIDQLEEE 47 (65)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHC
Confidence 7999999999974
No 234
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=22.58 E-value=4.3e+02 Score=21.57 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q 025638 181 LEHASLKEHLQSLLNDNQILKKA 203 (250)
Q Consensus 181 kEn~~LKe~l~~l~~eN~iLKrA 203 (250)
.+...+|.++.....+-..|+.-
T Consensus 55 ~~l~~~r~~l~~~~~~~~~L~~~ 77 (150)
T PF07200_consen 55 PELEELRSQLQELYEELKELESE 77 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444433333333333
No 235
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=22.55 E-value=6e+02 Score=25.51 Aligned_cols=58 Identities=24% Similarity=0.388 Sum_probs=31.7
Q ss_pred HHHHHHHHHH--HHHhhHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 182 EHASLKEHLQ--SLLNDNQI-LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 182 En~~LKe~l~--~l~~eN~i-LKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE 239 (250)
|...+..|+. .+..+|.. +++-..++-.-+.+++..+++++.+.+-++--|.+++++=
T Consensus 64 ~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is 124 (391)
T COG2959 64 ELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATIS 124 (391)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 3333444443 33334433 4555555555555666666666666666666666666654
No 236
>PRK00106 hypothetical protein; Provisional
Probab=22.39 E-value=8.8e+02 Score=25.09 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHH
Q 025638 154 DDARGRAARILE 165 (250)
Q Consensus 154 dDARaRAsRvLE 165 (250)
.+|++.|..+++
T Consensus 49 eeAe~eAe~I~k 60 (535)
T PRK00106 49 GKAERDAEHIKK 60 (535)
T ss_pred HHHHHHHHHHHH
Confidence 467777766663
No 237
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=22.34 E-value=6.7e+02 Score=23.73 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE 239 (250)
|.+|..-+-..+..|=+||..+|+-+---+. ..-++..|...++..+..++.|+..||
T Consensus 242 fk~Emekm~Kk~kklEKE~~~~k~k~e~~n~---~l~~m~eer~~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 242 FKKEMEKMSKKIKKLEKENQTWKSKWEKSNK---ALIEMAEERQKLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888888999999886655443 334555666667777777777777776
No 238
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.16 E-value=4e+02 Score=24.46 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025638 165 EVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAV 204 (250)
Q Consensus 165 EafEksi~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKrAv 204 (250)
..+|..+..+... ...|..||+.|.+|..-|+--+
T Consensus 43 ~~le~~~~~~~~~-----~~~l~~ql~~lq~ev~~LrG~~ 77 (263)
T PRK10803 43 TQLERISNAHSQL-----LTQLQQQLSDNQSDIDSLRGQI 77 (263)
T ss_pred HHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHhhHH
Confidence 4455555555544 1234445555555555554433
No 239
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=22.15 E-value=5.5e+02 Score=22.63 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv 204 (250)
+..-|.+|++||+.....|.-|..=+
T Consensus 79 L~qvN~lLReQLEq~~~~N~~L~~dl 104 (182)
T PF15035_consen 79 LAQVNALLREQLEQARKANEALQEDL 104 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667788888888777777776533
No 240
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=21.87 E-value=1.9e+02 Score=29.64 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=2.9
Q ss_pred HHHHHH
Q 025638 227 VISQYQ 232 (250)
Q Consensus 227 ~v~qYq 232 (250)
+|+||+
T Consensus 147 iI~Q~r 152 (488)
T PF06548_consen 147 IIAQTR 152 (488)
T ss_pred HHHHhh
Confidence 455553
No 241
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=21.80 E-value=5e+02 Score=23.72 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE--QKEKEVELLKLVISQYQDQARNLEVIF 242 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e--~~~~E~~~lkq~v~qYqeqir~LE~~N 242 (250)
++.||..|++-...|-.+.+==|+ |+-.+.|.--|- .+.+||..-.+=+.+...+...|-..|
T Consensus 67 LqedNqELRdLCCFLDddRqKgrk-larEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN 131 (195)
T PF10226_consen 67 LQEDNQELRDLCCFLDDDRQKGRK-LAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIREN 131 (195)
T ss_pred HHHHHHHHHHHHcccchhHHHhHH-HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 667888887766655555444444 444444443333 234444443333333333333333333
No 242
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.29 E-value=1.6e+02 Score=31.23 Aligned_cols=9 Identities=56% Similarity=0.608 Sum_probs=3.6
Q ss_pred HHHhhhhHH
Q 025638 207 QHERHLEQE 215 (250)
Q Consensus 207 Qh~R~~e~e 215 (250)
||.|+.|.|
T Consensus 435 q~~Rq~E~E 443 (697)
T PF09726_consen 435 QSSRQSEQE 443 (697)
T ss_pred HhhhhhHHH
Confidence 344443333
No 243
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.18 E-value=1e+03 Score=25.45 Aligned_cols=6 Identities=33% Similarity=0.418 Sum_probs=2.4
Q ss_pred CCCCCH
Q 025638 51 FPDVDP 56 (250)
Q Consensus 51 FP~md~ 56 (250)
|-+.||
T Consensus 417 ~~GtDp 422 (782)
T PRK00409 417 GAGTDP 422 (782)
T ss_pred CCCCCH
Confidence 334443
No 244
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.95 E-value=3.3e+02 Score=21.85 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILK 201 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLK 201 (250)
++++...++++++.+..+|.-|+
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~ 54 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLF 54 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445544444444444
No 245
>PF15327 Tankyrase_bdg_C: Tankyrase binding protein C terminal domain
Probab=20.81 E-value=66 Score=28.84 Aligned_cols=20 Identities=30% Similarity=0.748 Sum_probs=15.4
Q ss_pred HhcCCCCCHHHHHHHHhhch
Q 025638 48 LQMFPDVDPEVVKSVLGEHD 67 (250)
Q Consensus 48 ~~lFP~md~q~le~aLe~cg 67 (250)
..+||+|||-+|.-=|.--+
T Consensus 101 vplFPGmdPsaLKAQLrkR~ 120 (177)
T PF15327_consen 101 VPLFPGMDPSALKAQLRKRN 120 (177)
T ss_pred cccCCCCCHHHHHHHhccCC
Confidence 46899999998876665544
No 246
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=20.75 E-value=4.7e+02 Score=27.38 Aligned_cols=42 Identities=31% Similarity=0.329 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKE 220 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E 220 (250)
+++|...|.++++...++|.-|-+...=|-+|..|++...++
T Consensus 92 L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~ 133 (617)
T PF15070_consen 92 LRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELER 133 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888877788888777754433
No 247
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=20.56 E-value=1.4e+02 Score=25.29 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHH-------HHHhhHHHHHHHH
Q 025638 179 KELEHASLKEHLQ-------SLLNDNQILKKAV 204 (250)
Q Consensus 179 ~~kEn~~LKe~l~-------~l~~eN~iLKrAv 204 (250)
..+|...||+|+. .|-+||.+||+-+
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4455555665554 5556667776643
No 248
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=20.53 E-value=7.9e+02 Score=23.88 Aligned_cols=91 Identities=18% Similarity=0.238 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHh-----hhhh------------hhhHHHHHHHHHHHHH---HhhHH--
Q 025638 141 DLFVHEMMSAADLDDARGRAARILEVFERSIIT-----NSKA------------SKELEHASLKEHLQSL---LNDNQ-- 198 (250)
Q Consensus 141 El~V~EM~sAsd~dDARaRAsRvLEafEksi~~-----rs~a------------a~~kEn~~LKe~l~~l---~~eN~-- 198 (250)
..|++|..+=..+..|..|-..+|.. +=+|.. ..+. .++-|...||++|+.| +.++.
T Consensus 173 ~nll~~f~~ipe~~~a~~~Ie~ll~~-d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~ 251 (307)
T PF15112_consen 173 QNLLNEFRNIPEIVAAGSRIEQLLTS-DWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVL 251 (307)
T ss_pred HHHHHHhccChHHHHHHHHHHHHHhh-hhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44666666666666665554444421 222221 1111 1667999999999999 44555
Q ss_pred ---HHHHHHHHHHH--hhhhHH-HHHHHHHHHHHHHHHHH
Q 025638 199 ---ILKKAVSIQHE--RHLEQE-QKEKEVELLKLVISQYQ 232 (250)
Q Consensus 199 ---iLKrAv~iQh~--R~~e~e-~~~~E~~~lkq~v~qYq 232 (250)
++++.=.+.-- -.+++. ..+.|+|.|+++-.+-+
T Consensus 252 ~ee~~~~l~~~~~fL~~NkDL~~~l~~e~qkL~~l~~k~~ 291 (307)
T PF15112_consen 252 PEEDSKRLEVLKEFLRNNKDLRSNLQEELQKLDSLQTKHQ 291 (307)
T ss_pred chhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhc
Confidence 44443222211 122333 35556655555544443
No 249
>PF09321 DUF1978: Domain of unknown function (DUF1978); InterPro: IPR015400 This domain is found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. This entry includes the IncA proteins
Probab=20.49 E-value=1.4e+02 Score=27.98 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=28.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhch----hhHHHHHHHHhh
Q 025638 44 VSFLLQMFPDVDPEVVKSVLGEHD----NKIEDAIDRLRV 79 (250)
Q Consensus 44 l~~L~~lFP~md~q~le~aLe~cg----ndlDaAIksL~~ 79 (250)
|..|++|||++.+.+.+.=-+.-- +||+.|..+|-.
T Consensus 122 l~~LqalYp~v~v~~~e~~~q~t~~~~~~dLe~~~e~IE~ 161 (241)
T PF09321_consen 122 LRELQALYPEVSVSEVETERQETVSSNASDLEKAYENIEE 161 (241)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHhccccchHHHHHHHHHH
Confidence 667999999999999877666555 489977766654
No 250
>TIGR02791 VirB5 P-type DNA transfer protein VirB5. The VirB5 protein is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC as well as the P-type protein TrbJ and the F-type protein TraE.
Probab=20.47 E-value=1.8e+02 Score=25.91 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 214 QEQKEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 214 ~e~~~~E~~~lkq~v~qYqeqir~LE 239 (250)
.....+.+.++|+.+.||+.|..+|.
T Consensus 43 ~~q~~~q~~ql~~Q~~q~k~~y~slt 68 (220)
T TIGR02791 43 MAALKTQYEQLSEQIEQYKQQYGSLT 68 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677778888888888877765
No 251
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=20.45 E-value=76 Score=23.77 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 025638 158 GRAARILEVFERS 170 (250)
Q Consensus 158 aRAsRvLEafEks 170 (250)
+||+|++|.+|..
T Consensus 34 nrAariid~lE~~ 46 (63)
T smart00843 34 NRAARLIDQLEEE 46 (63)
T ss_pred hHHHHHHHHHHHC
Confidence 7999999999974
No 252
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=20.43 E-value=2.7e+02 Score=29.37 Aligned_cols=45 Identities=27% Similarity=0.325 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHHHHhhHHHHH
Q 025638 157 RGRAARILEVFERSIITNSKA--SKELEHASLKEHLQSLLNDNQILK 201 (250)
Q Consensus 157 RaRAsRvLEafEksi~~rs~a--a~~kEn~~LKe~l~~l~~eN~iLK 201 (250)
|-|=.-.++.+|.-+-+--.. .+.+||+.||.||..+..||..||
T Consensus 297 RkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 297 RKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 344445667777666554444 299999999999999999999985
No 253
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.29 E-value=6.4e+02 Score=22.66 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKK 202 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKr 202 (250)
++++....+.++..|..+|.-|+.
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~ 146 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKN 146 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444445555555543
No 254
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=20.25 E-value=5.9e+02 Score=23.16 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025638 217 KEKEVELLKLVISQYQDQARNLEVIF 242 (250)
Q Consensus 217 ~~~E~~~lkq~v~qYqeqir~LE~~N 242 (250)
..+|.+.|..--..+|.|++.|...-
T Consensus 152 ~r~ea~aL~~e~~aaqaQL~~lQ~qv 177 (192)
T PF11180_consen 152 ARQEAQALEAERRAAQAQLRQLQRQV 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666777777776543
No 255
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=20.21 E-value=9e+02 Score=24.58 Aligned_cols=56 Identities=27% Similarity=0.270 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 025638 164 LEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLK 225 (250)
Q Consensus 164 LEafEksi~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lk 225 (250)
+|+=||+-.+..+. + +|-|... |-+-++.|...|.+= .-.--||.|++.+|++||+
T Consensus 319 qeakek~~KEAqareaklqaec~r---Q~qlaLEEKaaLrke---rd~L~keLeekkreleql~ 376 (442)
T PF06637_consen 319 QEAKEKAGKEAQAREAKLQAECAR---QTQLALEEKAALRKE---RDSLAKELEEKKRELEQLK 376 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 45555555544333 2 4444443 444555555443220 1112346666666666643
No 256
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=20.19 E-value=7.9e+02 Score=23.91 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcc
Q 025638 223 LLKLVISQYQDQARNLEVIFLILT 246 (250)
Q Consensus 223 ~lkq~v~qYqeqir~LE~~NYaLs 246 (250)
-|.+-|.||..|+..|-.-|--|+
T Consensus 53 ~ltkTi~qy~~QLn~L~aENt~L~ 76 (305)
T PF14915_consen 53 TLTKTIFQYNGQLNVLKAENTMLN 76 (305)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHh
Confidence 466789999999999987776554
No 257
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.16 E-value=2.9e+02 Score=28.63 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=31.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
...|+.|..| +.+.-.-+.||+.-||+.|-|++.|.-
T Consensus 430 ~~~la~Lv~m--GF~e~~A~~ALe~~gnn~~~a~~~L~~ 466 (568)
T KOG2561|consen 430 GISLAELVSM--GFEEGKARSALEAGGNNEDTAQRLLSA 466 (568)
T ss_pred hhhHHHHHHh--ccccchHHHHHHhcCCcHHHHHHHHHH
Confidence 3457777765 678888999999999999999999976
No 258
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=20.03 E-value=9.6e+02 Score=26.04 Aligned_cols=64 Identities=25% Similarity=0.213 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 025638 161 ARILEVFERSIITNSKA--SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLV 227 (250)
Q Consensus 161 sRvLEafEksi~~rs~a--a~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~ 227 (250)
++.|..=++.|..-... ....|...|+.+|+.+-+||.-||-=|. -.+||++-++.|..-=.+.
T Consensus 112 ~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~---~~~keleir~~E~~~~~~~ 177 (769)
T PF05911_consen 112 SKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELH---VLSKELEIRNEEREYSRRA 177 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHH
Confidence 45677777777665544 2566778888899999999999987774 4566777666665544333
Done!