Query 025638
Match_columns 250
No_of_seqs 63 out of 65
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 14:25:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dhy_A CUE domain-containing p 99.1 1.1E-10 3.9E-15 86.4 4.5 45 41-85 19-63 (67)
2 1wgl_A TOLL-interacting protei 99.0 2.8E-10 9.5E-15 82.2 4.5 45 41-85 10-54 (59)
3 1p3q_Q VPS9P, vacuolar protein 98.0 9.4E-07 3.2E-11 63.1 0.9 39 42-80 14-52 (54)
4 1otr_A Protein CUE2; protein-p 97.7 2.3E-05 7.7E-10 54.8 3.8 37 44-80 8-44 (49)
5 2di0_A Activating signal coint 96.8 0.0012 4E-08 49.5 4.0 39 41-79 14-52 (71)
6 2jee_A YIIU; FTSZ, septum, coi 96.4 0.041 1.4E-06 42.1 10.5 67 162-238 6-74 (81)
7 1z96_A DNA-damage, UBA-domain 94.4 0.056 1.9E-06 34.3 4.4 34 42-77 6-39 (40)
8 1vg5_A RSGI RUH-014, rhomboid 94.2 0.055 1.9E-06 40.2 4.5 37 41-79 30-66 (73)
9 2v71_A Nuclear distribution pr 93.6 1.1 3.8E-05 38.8 12.2 63 182-244 57-120 (189)
10 2cpw_A CBL-interacting protein 92.8 0.36 1.2E-05 34.6 6.7 51 24-79 6-57 (64)
11 2dae_A KIAA0733 protein; mitog 92.8 0.083 2.8E-06 39.8 3.4 37 43-79 13-49 (75)
12 2jy5_A Ubiquilin-1; UBA, alter 92.8 0.15 5E-06 35.2 4.4 37 41-79 13-50 (52)
13 2knz_A Ubiquilin-4; cytoplasm, 92.7 0.14 4.8E-06 35.3 4.2 36 42-79 13-49 (53)
14 2dak_A Ubiquitin carboxyl-term 92.6 0.092 3.2E-06 37.3 3.3 37 41-79 10-46 (63)
15 1vej_A Riken cDNA 4931431F19; 92.5 0.14 4.7E-06 38.3 4.2 36 42-79 31-67 (74)
16 2g3q_A Protein YBL047C; endocy 92.3 0.18 6.1E-06 32.9 4.2 36 42-79 6-41 (43)
17 2dah_A Ubiquilin-3; UBA domain 91.8 0.19 6.6E-06 35.0 4.1 37 42-80 11-48 (54)
18 2v66_B Nuclear distribution pr 91.4 1.6 5.5E-05 34.9 9.5 62 183-244 5-67 (111)
19 1wji_A Tudor domain containing 91.3 0.24 8.1E-06 35.5 4.2 37 41-79 10-46 (63)
20 2bwb_A Ubiquitin-like protein 91.0 0.3 1E-05 33.0 4.3 35 43-79 10-45 (46)
21 1ify_A HHR23A, UV excision rep 90.7 0.25 8.4E-06 33.6 3.6 37 41-79 9-45 (49)
22 2ejs_A Autocrine motility fact 89.3 0.31 1.1E-05 35.0 3.4 41 41-82 14-54 (58)
23 1wj7_A Hypothetical protein (R 89.0 0.42 1.4E-05 38.0 4.2 36 43-79 42-77 (104)
24 1wr1_B Ubiquitin-like protein 88.9 0.46 1.6E-05 33.7 4.1 36 42-79 19-55 (58)
25 2cp9_A EF-TS, EF-TSMT, elongat 88.2 0.25 8.4E-06 36.1 2.2 40 41-81 10-49 (64)
26 1whc_A RSGI RUH-027, UBA/UBX 3 87.3 1.2 4.2E-05 31.7 5.5 37 41-79 10-47 (64)
27 2ekf_A Ancient ubiquitous prot 86.8 0.8 2.7E-05 33.2 4.3 41 41-82 14-54 (61)
28 2crn_A Ubash3A protein; compac 85.7 1.7 5.6E-05 31.2 5.5 38 41-80 10-48 (64)
29 4g3o_A E3 ubiquitin-protein li 84.8 0.71 2.4E-05 33.2 3.1 38 41-79 18-55 (58)
30 1veg_A NEDD8 ultimate buster-1 83.9 1.2 4.2E-05 33.8 4.3 37 41-79 30-66 (83)
31 2ekk_A UBA domain from E3 ubiq 82.6 1.2 4.2E-05 29.5 3.4 36 41-79 10-45 (47)
32 1dv0_A DNA repair protein HHR2 82.6 0.7 2.4E-05 31.2 2.2 35 43-79 7-41 (47)
33 1wiv_A UBP14, ubiquitin-specif 81.4 1.8 6.1E-05 31.7 4.2 37 41-79 30-66 (73)
34 3hnw_A Uncharacterized protein 81.3 12 0.00042 30.3 9.7 95 134-242 31-133 (138)
35 2dag_A Ubiquitin carboxyl-term 81.3 1.7 5.7E-05 31.9 4.0 38 41-80 10-48 (74)
36 2dna_A Unnamed protein product 80.0 1.4 4.8E-05 32.3 3.2 35 43-79 22-57 (67)
37 2dkl_A Trinucleotide repeat co 79.6 2.1 7.3E-05 32.3 4.2 41 41-83 22-62 (85)
38 1hjb_A Ccaat/enhancer binding 77.3 4.7 0.00016 30.8 5.6 42 184-235 39-80 (87)
39 2w6b_A RHO guanine nucleotide 76.9 11 0.00038 26.9 7.0 41 168-216 5-45 (56)
40 2dai_A Ubadc1, ubiquitin assoc 76.4 3 0.0001 31.3 4.2 37 41-79 30-66 (83)
41 1nkp_B MAX protein, MYC proto- 75.8 5.5 0.00019 29.1 5.5 44 196-239 38-81 (83)
42 1gk7_A Vimentin; intermediate 74.8 3.6 0.00012 27.1 3.8 28 219-246 6-33 (39)
43 3oja_B Anopheles plasmodium-re 73.3 19 0.00066 33.6 9.8 26 179-204 507-532 (597)
44 1hjb_A Ccaat/enhancer binding 71.8 7.8 0.00027 29.5 5.6 27 179-205 48-74 (87)
45 1ci6_A Transcription factor AT 71.2 23 0.00077 25.0 7.6 41 179-229 21-61 (63)
46 2dfs_A Myosin-5A; myosin-V, in 71.0 25 0.00084 37.0 10.9 55 179-239 989-1043(1080)
47 1vdl_A Ubiquitin carboxyl-term 69.4 5.9 0.0002 30.1 4.3 39 41-79 25-63 (80)
48 2lbc_A Ubiquitin carboxyl-term 69.3 4.8 0.00016 31.5 4.0 37 41-79 79-115 (126)
49 1a93_B MAX protein, coiled coi 68.6 7.6 0.00026 25.2 4.1 23 217-239 12-34 (34)
50 3qne_A Seryl-tRNA synthetase, 68.2 35 0.0012 33.0 10.6 65 179-250 45-109 (485)
51 2w83_C C-JUN-amino-terminal ki 67.8 21 0.00073 26.9 7.1 52 189-240 10-72 (77)
52 4ae4_A Ubiquitin-associated pr 67.7 4.2 0.00014 32.3 3.4 35 43-79 79-113 (118)
53 2cwb_A Chimera of immunoglobul 67.1 4.2 0.00014 32.2 3.3 36 42-79 68-104 (108)
54 1aip_C EF-TS, elongation facto 63.2 3.7 0.00013 35.6 2.5 27 59-85 21-47 (196)
55 1gd2_E Transcription factor PA 63.2 12 0.0004 27.5 4.8 23 179-201 48-70 (70)
56 1gu4_A CAAT/enhancer binding p 63.2 7.5 0.00026 29.0 3.8 16 186-201 41-56 (78)
57 1ci6_A Transcription factor AT 63.2 9 0.00031 27.1 4.1 26 179-204 35-60 (63)
58 1gu4_A CAAT/enhancer binding p 61.5 8 0.00027 28.9 3.7 26 179-204 48-73 (78)
59 1ses_A Seryl-tRNA synthetase; 61.1 32 0.0011 32.2 8.7 70 179-250 33-102 (421)
60 2dq0_A Seryl-tRNA synthetase; 61.0 57 0.0019 30.9 10.4 69 182-250 39-107 (455)
61 3oja_B Anopheles plasmodium-re 60.9 1E+02 0.0035 28.7 12.0 57 184-240 505-565 (597)
62 1xb2_B EF-TS, elongation facto 60.8 4.2 0.00014 37.0 2.5 21 59-79 22-42 (291)
63 3iox_A AGI/II, PA; alpha helix 59.9 1E+02 0.0035 30.2 12.1 42 155-201 20-61 (497)
64 2oqq_A Transcription factor HY 59.2 15 0.00053 24.8 4.4 31 213-246 7-37 (42)
65 1v92_A NSFL1 cofactor P47; 3-h 58.3 7.7 0.00026 25.0 2.8 36 43-79 8-43 (46)
66 1wgn_A UBAP1, ubiquitin associ 58.0 5.9 0.0002 28.9 2.4 34 44-79 23-56 (63)
67 2zxx_A Geminin; coiled-coil, c 57.8 20 0.00067 27.1 5.3 19 182-200 35-53 (79)
68 4emc_A Monopolin complex subun 56.6 41 0.0014 29.2 7.8 31 179-209 25-55 (190)
69 2cp8_A NEXT to BRCA1 gene 1 pr 55.5 11 0.00037 26.6 3.3 36 43-80 12-48 (54)
70 1vek_A UBP14, ubiquitin-specif 55.1 15 0.00052 27.4 4.3 37 41-79 30-67 (84)
71 2j5u_A MREC protein; bacterial 54.6 9 0.00031 33.6 3.5 36 194-229 25-60 (255)
72 1nkp_A C-MYC, MYC proto-oncoge 54.5 38 0.0013 25.2 6.5 43 197-239 44-86 (88)
73 2wt7_A Proto-oncogene protein 52.6 56 0.0019 22.8 7.6 41 179-229 21-61 (63)
74 1oai_A Nuclear RNA export fact 52.2 15 0.00051 25.8 3.6 31 52-82 18-48 (59)
75 2ooa_A E3 ubiquitin-protein li 52.2 16 0.00054 25.7 3.7 39 42-82 13-51 (52)
76 1nlw_A MAD protein, MAX dimeri 49.8 39 0.0013 24.8 5.8 40 197-236 39-78 (80)
77 4ae4_A Ubiquitin-associated pr 48.8 12 0.00042 29.6 3.1 38 41-80 9-46 (118)
78 3ghg_A Fibrinogen alpha chain; 48.5 61 0.0021 32.2 8.4 109 59-224 51-188 (562)
79 4dzn_A Coiled-coil peptide CC- 47.9 30 0.001 21.9 4.1 24 179-202 7-30 (33)
80 2yy0_A C-MYC-binding protein; 47.9 21 0.0007 24.7 3.8 24 179-202 24-47 (53)
81 4ath_A MITF, microphthalmia-as 47.8 69 0.0024 24.3 7.0 45 197-241 31-78 (83)
82 3s4r_A Vimentin; alpha-helix, 47.7 12 0.00042 28.4 2.9 27 220-246 10-36 (93)
83 1tr8_A Conserved protein (MTH1 47.4 13 0.00044 29.0 2.9 25 53-77 77-101 (102)
84 4dzn_A Coiled-coil peptide CC- 47.1 20 0.00069 22.7 3.2 22 182-203 3-24 (33)
85 2lva_A Ubiquitin carboxyl-term 52.6 4.1 0.00014 33.5 0.0 43 41-83 19-61 (129)
86 1deb_A APC protein, adenomatou 46.8 73 0.0025 22.4 7.1 46 185-233 7-52 (54)
87 2d9s_A CBL E3 ubiquitin protei 46.0 22 0.00074 25.1 3.6 35 44-80 13-47 (53)
88 1wle_A Seryl-tRNA synthetase; 45.6 1.3E+02 0.0046 28.9 10.4 70 181-250 84-154 (501)
89 1wlq_A Geminin; coiled-coil; 2 44.8 41 0.0014 25.6 5.3 22 180-201 37-58 (83)
90 1uii_A Geminin; human, DNA rep 44.0 53 0.0018 25.0 5.8 22 181-202 46-67 (83)
91 1t2k_D Cyclic-AMP-dependent tr 42.2 81 0.0028 21.6 6.9 38 181-228 22-59 (61)
92 2dal_A Protein KIAA0794; FAS a 41.6 25 0.00085 24.6 3.4 38 41-79 16-53 (62)
93 3he5_B Synzip2; heterodimeric 41.2 85 0.0029 21.5 6.6 41 183-240 5-45 (52)
94 4emc_A Monopolin complex subun 40.9 97 0.0033 26.8 7.7 46 190-238 22-67 (190)
95 2dzl_A Protein FAM100B; UBA-li 40.7 27 0.00092 24.9 3.6 37 42-79 19-55 (66)
96 3e7l_A Transcriptional regulat 40.2 6.9 0.00024 26.8 0.3 26 53-78 18-43 (63)
97 3oja_A Leucine-rich immune mol 39.7 1.1E+02 0.0036 28.1 8.3 28 217-244 426-453 (487)
98 1i84_S Smooth muscle myosin he 39.0 2.4E+02 0.0082 29.6 11.7 14 54-67 695-708 (1184)
99 3k9o_A Ubiquitin-conjugating e 38.2 33 0.0011 28.7 4.3 34 44-79 167-200 (201)
100 2dam_A ETEA protein; KIAA0887, 38.2 31 0.0011 24.6 3.5 39 41-79 19-57 (67)
101 3lss_A Seryl-tRNA synthetase; 38.0 1.8E+02 0.006 28.1 9.8 72 179-250 49-142 (484)
102 2oo9_A E3 ubiquitin-protein li 37.9 32 0.0011 23.6 3.4 28 53-80 15-42 (46)
103 1go4_E MAD1 (mitotic arrest de 37.9 1.4E+02 0.0049 23.2 7.7 24 182-205 13-36 (100)
104 2v4h_A NF-kappa-B essential mo 37.6 1.5E+02 0.0053 23.5 9.5 18 227-244 91-108 (110)
105 1uii_A Geminin; human, DNA rep 37.4 60 0.0021 24.7 5.2 14 190-203 41-54 (83)
106 1jnm_A Proto-oncogene C-JUN; B 37.3 53 0.0018 22.7 4.6 37 182-228 23-59 (62)
107 2akf_A Coronin-1A; coiled coil 37.1 51 0.0017 20.9 3.9 24 218-241 5-28 (32)
108 1am9_A Srebp-1A, protein (ster 37.0 79 0.0027 23.0 5.7 36 197-232 42-77 (82)
109 3a2a_A Voltage-gated hydrogen 36.6 1.1E+02 0.0039 21.7 6.2 39 189-230 12-50 (58)
110 2qsf_X RAD23, UV excision repa 36.2 37 0.0013 28.7 4.3 36 42-79 132-167 (171)
111 1umq_A Photosynthetic apparatu 35.6 16 0.00054 27.0 1.7 25 54-78 41-65 (81)
112 1dip_A Delta-sleep-inducing pe 35.5 18 0.0006 27.4 1.9 20 180-199 14-33 (78)
113 3hx3_A Retinaldehyde-binding p 35.3 36 0.0012 30.0 4.3 30 51-80 87-116 (316)
114 2dfs_A Myosin-5A; myosin-V, in 35.0 1.3E+02 0.0044 31.7 8.9 17 54-71 673-689 (1080)
115 2lbc_A Ubiquitin carboxyl-term 35.0 24 0.00081 27.5 2.7 36 42-79 5-41 (126)
116 3nmd_A CGMP dependent protein 34.6 1.1E+02 0.0038 22.6 6.1 22 211-232 46-67 (72)
117 2jp7_A MRNA export factor MEX6 34.3 29 0.001 24.3 2.8 29 52-80 17-45 (57)
118 3vp9_A General transcriptional 34.2 95 0.0032 23.9 5.9 13 228-240 70-82 (92)
119 2l5g_B Putative uncharacterize 34.2 89 0.0031 21.0 5.0 29 212-240 9-37 (42)
120 1wlq_A Geminin; coiled-coil; 2 33.6 1.3E+02 0.0046 22.8 6.6 23 179-201 43-65 (83)
121 2dq3_A Seryl-tRNA synthetase; 33.0 44 0.0015 31.3 4.6 65 179-250 42-106 (425)
122 2wt7_A Proto-oncogene protein 32.8 1.2E+02 0.0042 21.0 7.1 27 179-205 35-61 (63)
123 2zxx_A Geminin; coiled-coil, c 32.7 79 0.0027 23.8 5.1 24 179-202 39-62 (79)
124 1aua_A Phosphatidylinositol tr 32.5 49 0.0017 28.3 4.6 36 44-79 34-75 (296)
125 4h22_A Leucine-rich repeat fli 32.2 1.8E+02 0.0063 22.8 9.8 62 167-238 11-77 (103)
126 3na7_A HP0958; flagellar bioge 31.4 1.3E+02 0.0045 25.8 7.1 57 185-241 2-61 (256)
127 2yy0_A C-MYC-binding protein; 31.2 76 0.0026 21.8 4.5 26 213-238 20-45 (53)
128 2wvr_A Geminin; DNA replicatio 31.1 68 0.0023 28.2 5.2 46 179-231 113-158 (209)
129 4a5u_A RNA replicase polyprote 31.0 10 0.00035 32.1 -0.0 73 5-80 23-117 (160)
130 3jsv_C NF-kappa-B essential mo 30.2 1.9E+02 0.0066 22.4 7.4 48 188-245 40-87 (94)
131 2juj_A E3 ubiquitin-protein li 29.3 41 0.0014 24.0 2.9 37 44-82 11-47 (56)
132 2v4h_A NF-kappa-B essential mo 29.3 25 0.00087 28.1 2.0 22 215-236 86-107 (110)
133 4e61_A Protein BIM1; EB1-like 28.2 82 0.0028 24.9 4.8 27 178-204 8-34 (106)
134 3e21_A HFAF1, FAS-associated f 28.1 54 0.0018 22.0 3.2 35 42-76 7-41 (45)
135 3v6i_A V-type ATP synthase sub 28.1 2.4E+02 0.0081 22.8 9.2 10 155-164 10-19 (187)
136 3a7p_A Autophagy protein 16; c 27.3 2.7E+02 0.0093 23.2 9.5 24 217-240 101-124 (152)
137 2jn6_A Protein CGL2762, transp 26.2 2 6.9E-05 31.2 -4.6 29 179-207 64-92 (97)
138 2dgc_A Protein (GCN4); basic d 26.2 90 0.0031 22.0 4.3 24 179-202 28-51 (63)
139 1g2h_A Transcriptional regulat 25.4 17 0.00057 24.8 0.3 27 51-78 18-44 (61)
140 2oqq_A Transcription factor HY 25.0 1.6E+02 0.0055 19.8 5.7 26 179-204 15-40 (42)
141 1ntc_A Protein (nitrogen regul 24.9 19 0.00063 26.3 0.4 26 53-78 50-75 (91)
142 3cqx_C BAG family molecular ch 24.7 1.1E+02 0.0038 23.5 4.8 53 140-196 12-79 (88)
143 4fla_A Regulation of nuclear P 23.6 3E+02 0.01 22.4 12.4 72 157-228 67-140 (152)
144 1eto_A FIS, factor for inversi 23.4 36 0.0012 25.7 1.8 26 53-78 57-82 (98)
145 3mq7_A Bone marrow stromal ant 23.3 1.7E+02 0.0059 23.6 5.8 34 215-248 74-107 (121)
146 3hnw_A Uncharacterized protein 23.3 2.9E+02 0.0099 22.1 8.4 47 148-199 61-107 (138)
147 3he4_B Synzip5; heterodimeric 23.3 64 0.0022 21.7 2.8 19 211-229 12-30 (46)
148 3m9b_A Proteasome-associated A 23.1 86 0.0029 28.1 4.5 19 220-238 76-94 (251)
149 2ve8_A FTSK, DNA translocase F 23.1 41 0.0014 24.9 2.0 13 158-170 39-51 (73)
150 1f5n_A Interferon-induced guan 22.8 4.5E+02 0.015 25.7 9.9 14 160-173 457-470 (592)
151 2wvr_A Geminin; DNA replicatio 22.3 2.4E+02 0.0084 24.7 7.1 26 179-204 120-145 (209)
152 4e29_A Chimeric WZZB chain len 21.9 4.1E+02 0.014 23.3 8.8 19 60-78 48-66 (248)
153 2j5u_A MREC protein; bacterial 21.9 58 0.002 28.4 3.1 20 179-198 24-43 (255)
154 1oqy_A HHR23A, UV excision rep 21.8 30 0.001 32.1 1.3 34 44-79 329-362 (368)
155 1olm_A SEC14-like protein 2; l 21.8 70 0.0024 28.8 3.7 29 51-79 30-58 (403)
156 1r5l_A Alpha-TTP, protein (alp 21.3 79 0.0027 26.1 3.7 27 53-79 30-56 (262)
157 2qho_B E3 ubiquitin-protein li 21.2 1.1E+02 0.0038 21.4 3.8 45 34-78 3-47 (53)
158 1m1j_B Fibrinogen beta chain; 21.2 5.6E+02 0.019 24.6 11.9 22 219-240 168-189 (464)
159 1nkp_B MAX protein, MYC proto- 21.0 1.9E+02 0.0065 20.7 5.3 24 179-202 52-75 (83)
160 1lwu_C Fibrinogen gamma chain; 20.8 2.7E+02 0.0093 25.4 7.5 22 214-235 35-56 (323)
161 1zxa_A CGMP-dependent protein 20.7 79 0.0027 23.0 3.1 24 213-236 33-56 (67)
162 3bei_A Prothrombin; serine pro 20.6 29 0.001 23.6 0.7 12 4-15 15-26 (44)
163 2l3l_A Tubulin-specific chaper 20.6 2.2E+02 0.0075 22.1 5.9 32 210-241 56-99 (111)
164 1m1j_C Fibrinogen gamma chain; 20.3 2.5E+02 0.0086 26.5 7.3 12 218-229 118-129 (409)
165 2wg5_A General control protein 20.1 1E+02 0.0036 23.6 3.9 32 207-241 5-36 (109)
166 3qne_A Seryl-tRNA synthetase, 20.1 3.3E+02 0.011 26.2 8.2 20 218-237 84-103 (485)
167 2p22_C Protein SRN2; endosome, 20.1 4E+02 0.014 22.5 9.3 28 179-206 84-111 (192)
No 1
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=86.37 Aligned_cols=45 Identities=20% Similarity=0.463 Sum_probs=41.8
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhccccc
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa 85 (250)
+..+++|+.+||+||+++|+.+|++||+|+|+||++|.++...+.
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~~ 63 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESG 63 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCC
Confidence 667899999999999999999999999999999999999987653
No 2
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=99.00 E-value=2.8e-10 Score=82.18 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=41.5
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhccccc
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa 85 (250)
+.-+.+|+.+||+||+++|+.+|++|++|+|.||+.|.++...+.
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~ 54 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPS 54 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCC
Confidence 445899999999999999999999999999999999999887665
No 3
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=98.03 E-value=9.4e-07 Score=63.14 Aligned_cols=39 Identities=33% Similarity=0.578 Sum_probs=30.2
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 025638 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (250)
Q Consensus 42 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (250)
..+..|+.+||+||+++|+.||++++.++|+||.+|.++
T Consensus 14 ~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 347889999999999999999999999999999999775
No 4
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.74 E-value=2.3e-05 Score=54.80 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=35.0
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 025638 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (250)
Q Consensus 44 l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (250)
+..|..+||..+...++.+|+.|++|+|.||..|.+.
T Consensus 8 v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 8 LSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 6789999999999999999999999999999999874
No 5
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.78 E-value=0.0012 Score=49.50 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=37.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
.+.+.+++.|||++....+++.|+.+|+|.+.+|-.|.+
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 667999999999999999999999999999999999988
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.40 E-value=0.041 Score=42.09 Aligned_cols=67 Identities=25% Similarity=0.328 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 162 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 162 RvLEafEksi~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
-+|+-+|.=|-+..-. + ++.|...||++...|..+|.-++. .| +.+.+|.++||+-...+|++|+.|
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~------~~----~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH------QR----EELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777765555 3 899999999999999999886653 23 778899999999999999999987
No 7
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=94.43 E-value=0.056 Score=34.33 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.6
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHH
Q 025638 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (250)
Q Consensus 42 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 77 (250)
..|.+|..+ +.+++...+||..|++|++.||..|
T Consensus 6 ~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 6 SKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 357889998 8999999999999999999999876
No 8
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.21 E-value=0.055 Score=40.23 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=33.4
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
+..|.+|..| +++.+.+.+||..|++|++.|+..|..
T Consensus 30 ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 30 EEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4568899998 789999999999999999999999876
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.64 E-value=1.1 Score=38.77 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025638 182 EHASLKEHLQSLLNDNQILKKAVSIQ-HERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLI 244 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKrAv~iQ-h~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYa 244 (250)
=+..|+.++..|..|..-+|.=+..+ .+-.+.....+.|+.+|+....+|+.+||.||+.|=-
T Consensus 57 ~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDd 120 (189)
T 2v71_A 57 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 120 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 35556666666666666666544333 2334456678889999999999999999999999843
No 10
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.82 E-value=0.36 Score=34.60 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=40.3
Q ss_pred CCcccccCCCCCCCCCCCCcHHHHHhcCCCCCHHHHHHHHhhchh-hHHHHHHHHhh
Q 025638 24 AKRSRCSTFGSLVRSGSDDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRV 79 (250)
Q Consensus 24 sKR~Rcsss~sp~r~~~~~~l~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~ 79 (250)
+||.+-..... ...+..|.+|..| +++++...+||..||| |++.|+.-|.+
T Consensus 6 ~~r~~t~~ya~---~~~e~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 6 SGRNRQQRPGT---IKHGSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CSCCSCCSSCS---SSCCCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred ccchhhhcccc---cCCHHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 67765433322 2336779999998 7889999999999998 99999999976
No 11
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.79 E-value=0.083 Score=39.84 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=35.0
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 43 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
+++.|+..||.+...||...+-+.++++|+.|..|.+
T Consensus 13 vfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~q 49 (75)
T 2dae_A 13 VLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQ 49 (75)
T ss_dssp HHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHH
T ss_pred HHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4899999999999999999999999999999999976
No 12
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=92.78 E-value=0.15 Score=35.18 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=32.5
Q ss_pred CCcHHHHHhcCCCC-CHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 79 (250)
+.-|.+|..| +. |.+...+||..||+|++.||..|..
T Consensus 13 ~~~l~~L~~M--GF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 13 QQQLEQLSAM--GFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3458999998 78 9999999999999999999998854
No 13
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=92.65 E-value=0.14 Score=35.34 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=32.0
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 42 ~~l~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 79 (250)
.-|.+|..| +. |.+...+||..||+|++.||..|..
T Consensus 13 ~~l~~L~~M--GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 13 QQLEQLNSM--GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHTT--TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 347889888 67 9999999999999999999999876
No 14
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.63 E-value=0.092 Score=37.28 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
+..|.+|..| +++.....+||..|+||++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 10 EDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4668999998 677899999999999999999999987
No 15
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.48 E-value=0.14 Score=38.26 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=31.7
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 42 ~~l~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 79 (250)
.-|.+|..| ++ |.+...+||..+++|++.||..|..
T Consensus 31 ~qi~qL~eM--GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 31 QELEELKAL--GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHH--TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 357888888 54 7899999999999999999999986
No 16
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=92.26 E-value=0.18 Score=32.92 Aligned_cols=36 Identities=22% Similarity=0.116 Sum_probs=30.7
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 42 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
..|.+|..+ +.++....+||..|++|++.|+.-|-+
T Consensus 6 ~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 347788887 678899999999999999999988754
No 17
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.75 E-value=0.19 Score=35.02 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=31.8
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhchhhHHHHHHHHhhh
Q 025638 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRVL 80 (250)
Q Consensus 42 ~~l~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~L 80 (250)
.-|.+|..| ++ |.+...+||..+++|++.||..|...
T Consensus 11 ~~l~~L~~M--GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSM--GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 358999998 56 67788999999999999999999873
No 18
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.37 E-value=1.6 Score=34.91 Aligned_cols=62 Identities=18% Similarity=0.121 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025638 183 HASLKEHLQSLLNDNQILKKAVSIQH-ERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLI 244 (250)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKrAv~iQh-~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYa 244 (250)
+..|+.....|..|.--+|.=+.-++ +-.+..-..+.|+.+|+..-..|+.+||.||+.|=-
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDD 67 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 67 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 45577777777777777776555443 334456668889999999999999999999999843
No 19
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.31 E-value=0.24 Score=35.54 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=33.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
+..|.+|..| +++.....+||..|++|++.|+.-|..
T Consensus 10 ~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 10 EKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4568889888 789999999999999999999999876
No 20
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=91.02 E-value=0.3 Score=32.96 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=29.8
Q ss_pred cHHHHHhcCCCC-CHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 43 PVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 43 ~l~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 79 (250)
-|.+|..| +. |.+...+||..+++|++.||..|..
T Consensus 10 ~i~~L~~M--GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 10 QLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 47888887 54 7888999999999999999998853
No 21
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.68 E-value=0.25 Score=33.57 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=32.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
+..|.+|..| +.++....+||..|+||++.|+.-|.+
T Consensus 9 ~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3457888888 789999999999999999999998865
No 22
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.32 E-value=0.31 Score=35.02 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=36.7
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhcc
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (250)
++.+++++.+||+++...+..=|+..| +++..|..+.+=+|
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGrl 54 (58)
T 2ejs_A 14 NAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGRI 54 (58)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcCC
Confidence 567899999999999999999999999 99999998876444
No 23
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=88.97 E-value=0.42 Score=37.98 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=31.8
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 43 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
-|..|..+ .+++++-...||..|++||..||..|.+
T Consensus 42 kVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 42 KVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46677777 6899999999999999999999999986
No 24
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=88.95 E-value=0.46 Score=33.67 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=31.1
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 42 ~~l~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 79 (250)
.-|.+|..| ++ |.+...+||..+++|++.||+.|..
T Consensus 19 ~qi~~L~~M--GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 19 HQLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 357889988 44 7889999999999999999999865
No 25
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=88.15 E-value=0.25 Score=36.08 Aligned_cols=40 Identities=13% Similarity=-0.012 Sum_probs=31.5
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhc
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~ 81 (250)
...|..||.. -+....--.+||++|++||+.||.-|..-.
T Consensus 10 ~~~Vk~LRe~-TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 10 KELLMKLRRK-TGYSFVNCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp CHHHHHHHHH-HCCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4568888876 345555678999999999999999998643
No 26
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.27 E-value=1.2 Score=31.69 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=33.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhch-hhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHD-NKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cg-ndlDaAIksL~~ 79 (250)
+..|.+|..| +++....++||..|| +|++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 10 LTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 5678999998 778899999999994 899999999987
No 27
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.81 E-value=0.8 Score=33.20 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=37.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhcc
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (250)
++.+++++.+||++....+..=|+..| +++..|..+.+=++
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr~ 54 (61)
T 2ekf_A 14 ATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEGAV 54 (61)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcCCC
Confidence 556899999999999999999999999 99999999887555
No 28
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=85.66 E-value=1.7 Score=31.16 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=34.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchh-hHHHHHHHHhhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRVL 80 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~L 80 (250)
+..|.+|..| +++.....+||..||| |++.|+.-|.+.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 10 PSLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp CSSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 5678999997 7889999999999999 999999999873
No 29
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=84.79 E-value=0.71 Score=33.24 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=33.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
++.+++++.+||+++...+..-|+.. ++++..|..+.+
T Consensus 18 ~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILe 55 (58)
T 4g3o_A 18 NAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHc
Confidence 45689999999999999999999988 589999988754
No 30
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=83.93 E-value=1.2 Score=33.81 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=34.4
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
+..|.+|..| ++++...++||..|++|++-|+.-|..
T Consensus 30 ee~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 30 QESINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5678999999 899999999999999999999999987
No 31
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.60 E-value=1.2 Score=29.47 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=30.4
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
+..|.+|..+ +.++....+||..|| |++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDM--GFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHH--HCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 4568889888 667799999999997 89999998864
No 32
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=82.55 E-value=0.7 Score=31.19 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=29.8
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 43 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
.|.+|..| ++++..+.+||.+||+|.+.|..-|-.
T Consensus 7 aI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 7 AIERLKAL--GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 36667777 788999999999999999999988754
No 33
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=81.37 E-value=1.8 Score=31.69 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=33.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
+..|.+|..+ +++.+...+||..||||++.|+.-|.+
T Consensus 30 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5568999998 678999999999999999999999876
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.33 E-value=12 Score=30.33 Aligned_cols=95 Identities=17% Similarity=0.187 Sum_probs=65.7
Q ss_pred CChhhhHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHHHhhhhhh-----hhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 025638 134 TDGSKWVDLFVHEMMSA---ADLDDARGRAARILEVFERSIITNSKAS-----KELEHASLKEHLQSLLNDNQILKKAVS 205 (250)
Q Consensus 134 ~~g~eWVEl~V~EM~sA---sd~dDARaRAsRvLEafEksi~~rs~aa-----~~kEn~~LKe~l~~l~~eN~iLKrAv~ 205 (250)
..-+..|+-=++||... ..+++-| .+|.+.-.-+ .++++..|+++++.+.+|..-||-=+.
T Consensus 31 ~~vA~~vd~km~ei~~~~~~~~l~~~r-----------~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 31 QRVASYINNKITEFNKEESYRRMSAEL-----------RTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTSCHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777888754 3333333 3444443331 677888888889888888888886332
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025638 206 IQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIF 242 (250)
Q Consensus 206 iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~N 242 (250)
-- +-.+++..+|+..|+.-+...|+|+..||-.+
T Consensus 100 ~~---~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 100 AA---QIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22467788899999999999999999998654
No 35
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.32 E-value=1.7 Score=31.94 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=33.6
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchh-hHHHHHHHHhhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRVL 80 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~L 80 (250)
+..|.+|..| +++....++||..||| |++.|+.-|.+.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 10 ESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 5668999998 7789999999999997 899999999873
No 36
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=80.03 E-value=1.4 Score=32.33 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=30.5
Q ss_pred cHHHHHhc-CCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 43 PVSFLLQM-FPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 43 ~l~~L~~l-FP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
-|.+|+.| | .|.+...+||.+|++|++.||..|..
T Consensus 22 ql~qL~~MGF--~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 22 EMECLQAMGF--VNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHcCC--CcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 47778876 4 57888899999999999999999988
No 37
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=79.60 E-value=2.1 Score=32.33 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=35.4
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhccc
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFS 83 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~ 83 (250)
+..|.+|..| +++++..++||..|++|++.|+.-|.+...+
T Consensus 22 ~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 22 SRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 4568899998 7788999999999999999999999885443
No 38
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=77.30 E-value=4.7 Score=30.77 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025638 184 ASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQA 235 (250)
Q Consensus 184 ~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqi 235 (250)
..+......|-.||..|+.=| +....|++.|++++.|..+++
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v----------~~L~~E~~~Lr~ll~~~p~~~ 80 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKV----------EQLSRELSTLRNLFKQLPEPL 80 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHCcHHH
Confidence 344556666777777776543 345667777777777766654
No 39
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=76.94 E-value=11 Score=26.89 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=28.9
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH
Q 025638 168 ERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ 216 (250)
Q Consensus 168 Eksi~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~ 216 (250)
|||++.-+-+ ||-|+..|.+||.-||+++---..=.+++|.
T Consensus 5 EKSlVDtVYa--------LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~ 45 (56)
T 2w6b_A 5 SKSLVDTVYA--------LKDEVQELRQDNKKMKKSLEEEQRARKDLEK 45 (56)
T ss_dssp CHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777776666 8889999999999999988543332334444
No 40
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.43 E-value=3 Score=31.32 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=33.8
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
+..|.+|..| +++.....+||..|++|++.|+.-|.+
T Consensus 30 e~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 30 EAALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4568999998 888999999999999999999999987
No 41
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=75.78 E-value=5.5 Score=29.09 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 196 DNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 196 eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE 239 (250)
--.||+.|+..=..-+.+.+....|+..|++-..+.+.++.+|+
T Consensus 38 K~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 38 RAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35688888886666666777777788888888888888877664
No 42
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=74.83 E-value=3.6 Score=27.07 Aligned_cols=28 Identities=32% Similarity=0.284 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 025638 219 KEVELLKLVISQYQDQARNLEVIFLILT 246 (250)
Q Consensus 219 ~E~~~lkq~v~qYqeqir~LE~~NYaLs 246 (250)
.++|.|..-++-|=++||.||..|-.|.
T Consensus 6 e~mq~LNdrlAsyidkVR~LE~~N~~Le 33 (39)
T 1gk7_A 6 VELQELNDRFANYIDKVRFLEQQNKILL 33 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888899999999999999997764
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.32 E-value=19 Score=33.64 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv 204 (250)
+.++...+++..+.+.+++..+++.+
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 33455556666666666666666665
No 44
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=71.77 E-value=7.8 Score=29.54 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVS 205 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~ 205 (250)
+.+||..|+.+++.|..|...||..|.
T Consensus 48 Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 48 LTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998765
No 45
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=71.25 E-value=23 Score=25.00 Aligned_cols=41 Identities=29% Similarity=0.399 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~ 229 (250)
-..+...|..+++.|..+|.-|+.=+ +....|+++||+++.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i----------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERA----------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Confidence 44466677777777777777776433 445567777777764
No 46
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=70.97 E-value=25 Score=37.04 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE 239 (250)
+++|...|+++++.+.+|+..|+.... +.+ ++.+..+.+|+......++|+..||
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~----~~~--~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWAD----KYK--HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777755431 111 2333444444445445555554444
No 47
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=69.36 E-value=5.9 Score=30.08 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=36.6
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
..++.+|+.|-=--|+++|..||.++..||..|+--|.+
T Consensus 25 q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 25 QTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 457899999999999999999999999999999999887
No 48
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=69.27 E-value=4.8 Score=31.54 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=33.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
+..|.+|..+ +.+.....+||..||||++.|+.-|..
T Consensus 79 e~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 79 EEIVAIITSM--GFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5568999998 778999999999999999999999976
No 49
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=68.62 E-value=7.6 Score=25.23 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025638 217 KEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 217 ~~~E~~~lkq~v~qYqeqir~LE 239 (250)
-++++..||..-...++|||+||
T Consensus 12 ~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhHHHHHHHHHHHHHHHHhcC
Confidence 34556666666677777888876
No 50
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=68.21 E-value=35 Score=33.01 Aligned_cols=65 Identities=11% Similarity=-0.045 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLILTLLGP 250 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~hl~ 250 (250)
++.|...|+.+...+.++.+-+|+. ..+.++.-.|+..||.-+....++++.+|..-+.+-+.+|
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~~k~~-------~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iP 109 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGKRFKA-------KEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVG 109 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-------TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455555666666666666655541 2345667778888888999999999888877666655554
No 51
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=67.84 E-value=21 Score=26.92 Aligned_cols=52 Identities=27% Similarity=0.380 Sum_probs=32.4
Q ss_pred HHHHHHhhHHHH---HHHHHHH--------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 189 HLQSLLNDNQIL---KKAVSIQ--------HERHLEQEQKEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 189 ~l~~l~~eN~iL---KrAv~iQ--------h~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
+++.|+.||.=| |.|+.|. -+-..|++....|+..+++.....+++|+.||.
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555443 3344333 345667788889999999999999999998884
No 52
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=67.73 E-value=4.2 Score=32.29 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=29.1
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 43 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
.+..|..| +.+...+.+||..|+||+|.|+.-|-.
T Consensus 79 ~v~~L~eM--GF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 79 LMSKFKEM--GFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35666665 578999999999999999999998754
No 53
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=67.14 E-value=4.2 Score=32.21 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=30.2
Q ss_pred CcHHHHHhc-CCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 42 DPVSFLLQM-FPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 42 ~~l~~L~~l-FP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
.-|.+|+.| | .|.+...+||..++.|++.||+.|..
T Consensus 68 ~qL~qL~eMGF--~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 68 PQLQQLRDMGI--QDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHTTTC--CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 357788876 3 36789999999999999999999976
No 54
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=63.22 E-value=3.7 Score=35.62 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=22.7
Q ss_pred HHHHHhhchhhHHHHHHHHhhhccccc
Q 025638 59 VKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (250)
Q Consensus 59 le~aLe~cgndlDaAIksL~~L~L~sa 85 (250)
-.+||++|++|+|.||+-|..--+..+
T Consensus 21 CKkAL~e~~GD~ekAie~LR~kG~akA 47 (196)
T 1aip_C 21 VKRALEDAGWDEEKAVQLLRERGAMKA 47 (196)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCchh
Confidence 468999999999999999998555444
No 55
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=63.19 E-value=12 Score=27.46 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILK 201 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLK 201 (250)
+..||..|++++..|..||..||
T Consensus 48 l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 45555555555555555555543
No 56
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=63.19 E-value=7.5 Score=29.04 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhHHHHH
Q 025638 186 LKEHLQSLLNDNQILK 201 (250)
Q Consensus 186 LKe~l~~l~~eN~iLK 201 (250)
+++....|..||..|+
T Consensus 41 ~~~r~~~L~~eN~~L~ 56 (78)
T 1gu4_A 41 TQHKVLELTAENERLQ 56 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555555554
No 57
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=63.16 E-value=9 Score=27.11 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv 204 (250)
+.+||..|+.++..|-.|+..||..+
T Consensus 35 L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 35 LEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999765
No 58
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=61.48 E-value=8 Score=28.88 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv 204 (250)
+.+||..|+.+++.|..|...||..|
T Consensus 48 L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 48 LTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999988888644
No 59
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=61.07 E-value=32 Score=32.18 Aligned_cols=70 Identities=21% Similarity=0.165 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLILTLLGP 250 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~hl~ 250 (250)
+.++...++.+++.|..+.+.+-+.+.. ....+.++.-.|+..||.-+....++++.+|..-+.+-+.+|
T Consensus 33 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 102 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTERNQVAKRVPK--APPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVP 102 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5556666667777777776666666654 222345566778888888888888888888877766666655
No 60
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=60.96 E-value=57 Score=30.93 Aligned_cols=69 Identities=7% Similarity=0.073 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 025638 182 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLILTLLGP 250 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~hl~ 250 (250)
+...++.+++.|..+.+.+-+.+..--....+.++.-.|+..||.-+....++++.+|..-+.+-+.+|
T Consensus 39 ~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 107 (455)
T 2dq0_A 39 EWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLP 107 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444444444444444444433211112345667778888888888889999888877766666655
No 61
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.90 E-value=1e+02 Score=28.68 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 184 ASLKEHLQSLLNDNQILKKAVSIQHERH----LEQEQKEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 184 ~~LKe~l~~l~~eN~iLKrAv~iQh~R~----~e~e~~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
..+++.+..+..+...+.+-...+.+.. ++++...+|+..++..+..-++++..|..
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~ 565 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQ 565 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHH
Confidence 5556666666666666655555555444 44444444555555555555555544433
No 62
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=60.83 E-value=4.2 Score=36.99 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=19.6
Q ss_pred HHHHHhhchhhHHHHHHHHhh
Q 025638 59 VKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 59 le~aLe~cgndlDaAIksL~~ 79 (250)
-.+||++|++|+|.||+-|..
T Consensus 22 CKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 22 CKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 579999999999999999987
No 63
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=59.89 E-value=1e+02 Score=30.19 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHH
Q 025638 155 DARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILK 201 (250)
Q Consensus 155 DARaRAsRvLEafEksi~~rs~aa~~kEn~~LKe~l~~l~~eN~iLK 201 (250)
+.+..=+.+-+++|+.+.+.-+ +|+.+|.+.+++.+.|.-.|
T Consensus 20 rvqkana~aka~Ye~~~ae~~a-----~n~~i~aeNeaikkrNa~ak 61 (497)
T 3iox_A 20 RVQKANADAKAAYEAAVAANNA-----ANAALTAENTAIKKRNADAK 61 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHH
Confidence 3344445567778877776444 34444444444444444443
No 64
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=59.24 E-value=15 Score=24.80 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 025638 213 EQEQKEKEVELLKLVISQYQDQARNLEVIFLILT 246 (250)
Q Consensus 213 e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs 246 (250)
|+|.+.++++. -.+...++|.||+--|+-|+
T Consensus 7 eLE~r~k~le~---~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 7 ELENRVKDLEN---KNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHH
Confidence 45555555555 77777889999999998875
No 65
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=58.32 E-value=7.7 Score=24.96 Aligned_cols=36 Identities=6% Similarity=0.093 Sum_probs=28.9
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 43 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
++.++..+ -+.++..-...|+.++.||+.||..+.+
T Consensus 8 ~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 8 ALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35555554 5678999999999999999999987754
No 66
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=58.01 E-value=5.9 Score=28.92 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=27.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 44 l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
|+.|-.| +..++...+||.+|||||+.|..-|-.
T Consensus 23 V~~LvsM--GFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 23 VETVVNM--GYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5555554 467888999999999999999998876
No 67
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=57.80 E-value=20 Score=27.13 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhHHHH
Q 025638 182 EHASLKEHLQSLLNDNQIL 200 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~iL 200 (250)
||..|.++++.+-.+...|
T Consensus 35 EN~~Lh~~ie~~~eEi~~L 53 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARL 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 68
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=56.62 E-value=41 Score=29.17 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHE 209 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~ 209 (250)
++.||.+|.++++..-.|+.-||+=++-..+
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667777777777555555555444333333
No 69
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=55.47 E-value=11 Score=26.59 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=29.9
Q ss_pred cHHHHHhc-CCCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 025638 43 PVSFLLQM-FPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (250)
Q Consensus 43 ~l~~L~~l-FP~md~q~le~aLe~cgndlDaAIksL~~L 80 (250)
.+.+|..| | .|.+.-.++|..+|.|++.||..|..+
T Consensus 12 ~L~~L~eMGF--~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 12 LMAHLFEMGF--CDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCC--CcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45666665 3 388999999999999999999999875
No 70
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=55.10 E-value=15 Score=27.39 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=33.0
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchh-hHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~ 79 (250)
+..|.+|..| +++.....+||..++| |++.|+.-|..
T Consensus 30 e~~v~~L~~M--GF~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 30 EEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5678999998 7888999999999974 99999999987
No 71
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=54.61 E-value=9 Score=33.63 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=19.0
Q ss_pred HhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025638 194 LNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (250)
Q Consensus 194 ~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~ 229 (250)
.+||.-||+=++....+..+++...+|.++|+.++.
T Consensus 25 ~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 25 YTENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp -CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444455555666667777776643
No 72
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=54.49 E-value=38 Score=25.23 Aligned_cols=43 Identities=26% Similarity=0.232 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 197 NQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (250)
Q Consensus 197 N~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE 239 (250)
-.||++|+..=+.-+.+......++..|++-..+.+.+|..|+
T Consensus 44 ~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 44 VVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4688888875444444444555566666666666666766664
No 73
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.55 E-value=56 Score=22.76 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~ 229 (250)
-......|..+...|..+|.-|+.-| +....|+.+|++++.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei----------~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEI----------ANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 44456667777777777777776543 345566777776653
No 74
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=52.21 E-value=15 Score=25.83 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHhhchhhHHHHHHHHhhhcc
Q 025638 52 PDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (250)
Q Consensus 52 P~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (250)
=+|-.+-=++.|+++|=|++.||+.+.+|.-
T Consensus 18 Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 18 SGMNLEWSQKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp HCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4688888999999999999999999999864
No 75
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=52.17 E-value=16 Score=25.74 Aligned_cols=39 Identities=28% Similarity=0.266 Sum_probs=32.9
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhcc
Q 025638 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (250)
Q Consensus 42 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (250)
+-|++|-.+ +.|.+-+.+||..++||+|-|.--|.+..+
T Consensus 13 ~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLlef~~ 51 (52)
T 2ooa_A 13 AKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILREFAF 51 (52)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHHCC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHhcC
Confidence 347777776 789999999999999999999998887643
No 76
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=49.83 E-value=39 Score=24.82 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 197 NQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQAR 236 (250)
Q Consensus 197 N~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir 236 (250)
-.||++|+..=+.-+.+-....+|..+|+.-..+-+.++.
T Consensus 39 ~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 39 LSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677777763333333333444455555544444444443
No 77
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=48.77 E-value=12 Score=29.57 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=31.9
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (250)
..+|.+|..+ +.+...+.+||..||||.+.|+.-|...
T Consensus 9 ~~~v~~l~~M--GFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 9 RQCVETVVNM--GYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 3457777776 5668899999999999999999999874
No 78
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=48.46 E-value=61 Score=32.23 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHhhchhhHHHHHHHHhhhccccchhhhccCCCCCcccCCCCCCCCCCccCCCCCchhhhcccccccCCCCCCChhh
Q 025638 59 VKSVLGEHDNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIGNFSAVPGESATSCSQMSEEEVRSAHTNFCGENITDGSK 138 (250)
Q Consensus 59 le~aLe~cgndlDaAIksL~~L~L~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~e 138 (250)
|...|..-+-||..-|.-|++ .++.-+.+. .+-..
T Consensus 51 LQglLdkqErDltkrINELKn-qLEdlsKns--------------------------------------------Kdseq 85 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKN-SLFEYQKNN--------------------------------------------KDSHS 85 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHTHHHHHH--------------------------------------------HHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHH-HHHHHHhhc--------------------------------------------hhHHH
Q ss_pred hHHHHHHHH-hcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH--
Q 025638 139 WVDLFVHEM-MSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE-- 215 (250)
Q Consensus 139 WVEl~V~EM-~sAsd~dDARaRAsRvLEafEksi~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e-- 215 (250)
|+..++.++ -...+..|=.+.-..+-+-||+-|.. ||+.+..-+....+|+..|.-|+.-+|-+|
T Consensus 86 y~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqy------------LKekVdnQlsnIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 86 LTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEV------------LKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------------------------HHHHHHHHH
Q 025638 216 --------------------------QKEKEVELL 224 (250)
Q Consensus 216 --------------------------~~~~E~~~l 224 (250)
+.+++|.|+
T Consensus 154 IdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 154 IDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccchheeecchHHHHHHHHHHHHH
No 79
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=47.93 E-value=30 Score=21.91 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKK 202 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKr 202 (250)
+.+|...||..+..|.-|..-||.
T Consensus 7 lkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555555555555555554443
No 80
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.87 E-value=21 Score=24.73 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKK 202 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKr 202 (250)
++.||..||.+++.|..++.-||+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887776
No 81
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=47.77 E-value=69 Score=24.25 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 025638 197 NQILKKAVSIQHERHLEQEQKEKEV---ELLKLVISQYQDQARNLEVI 241 (250)
Q Consensus 197 N~iLKrAv~iQh~R~~e~e~~~~E~---~~lkq~v~qYqeqir~LE~~ 241 (250)
-+|||++|-.=..-++|.+-..++. .+|...-.++-..|+.||..
T Consensus 31 g~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 31 GTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4799999875444444444333333 33334566777778888864
No 82
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=47.75 E-value=12 Score=28.37 Aligned_cols=27 Identities=30% Similarity=0.219 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 025638 220 EVELLKLVISQYQDQARNLEVIFLILT 246 (250)
Q Consensus 220 E~~~lkq~v~qYqeqir~LE~~NYaLs 246 (250)
+++.|..-++-|=++||.||..|-.|.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le 36 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILL 36 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888889999999999999997774
No 83
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=47.40 E-value=13 Score=28.97 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHhhchhhHHHHHHHH
Q 025638 53 DVDPEVVKSVLGEHDNKIEDAIDRL 77 (250)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL 77 (250)
+.+..--.+||++|++||=.||..|
T Consensus 77 ~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 77 GASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 6666778899999999999999776
No 84
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=47.06 E-value=20 Score=22.70 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 025638 182 EHASLKEHLQSLLNDNQILKKA 203 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKrA 203 (250)
|...||+.+..|.+|..-||=-
T Consensus 3 eiaalkqeiaalkkeiaalkfe 24 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFE 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888877743
No 85
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=52.62 E-value=4.1 Score=33.47 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=38.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhccc
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFS 83 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~ 83 (250)
..+|-+|+-|==-=|+++|..||.+|..||.-|+--|.+=+..
T Consensus 19 Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~ 61 (129)
T 2lva_A 19 QMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVK 61 (129)
Confidence 6688999999888899999999999999999999999874443
No 86
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=46.78 E-value=73 Score=22.41 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 025638 185 SLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQD 233 (250)
Q Consensus 185 ~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqe 233 (250)
.|-.|++.|..||..|+|-+.---... -....|-..+|.++-+.|-
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~l---skLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHL---TKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHH---HHHHhhhhhHHHHHHHHcc
Confidence 356789999999999998664332222 2334466667777766553
No 87
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=45.97 E-value=22 Score=25.11 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 025638 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (250)
Q Consensus 44 l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (250)
+.+|-.+ +.|.+-+.+||..++||+|.|.--|.+.
T Consensus 13 I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 13 IERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 6777776 7899999999999999999999988864
No 88
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=45.58 E-value=1.3e+02 Score=28.90 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 025638 181 LEHASLKEHLQSLLNDNQILKKAVSIQHERH-LEQEQKEKEVELLKLVISQYQDQARNLEVIFLILTLLGP 250 (250)
Q Consensus 181 kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~-~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~hl~ 250 (250)
.|...|+.+...+.++.+-+|+.=.-.-... .+.++.-.|+..||.-+....++++.+|..-+.+-+.+|
T Consensus 84 ~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iP 154 (501)
T 1wle_A 84 EQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLP 154 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344455555555555554443210000000 144566677888888888888888888877766666555
No 89
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=44.77 E-value=41 Score=25.64 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHhhHHHHH
Q 025638 180 ELEHASLKEHLQSLLNDNQILK 201 (250)
Q Consensus 180 ~kEn~~LKe~l~~l~~eN~iLK 201 (250)
-+||.-|.+.++.+-.|...||
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk 58 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLR 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666655555
No 90
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=43.99 E-value=53 Score=25.03 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH
Q 025638 181 LEHASLKEHLQSLLNDNQILKK 202 (250)
Q Consensus 181 kEn~~LKe~l~~l~~eN~iLKr 202 (250)
+||+-|.++++.+-.|+..||.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~ 67 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777666666653
No 91
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.19 E-value=81 Score=21.63 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 025638 181 LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVI 228 (250)
Q Consensus 181 kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v 228 (250)
.....|..+...|..+|.-|+.=| .....|+.+||+++
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i----------~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEV----------TLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHh
Confidence 345556666666666666665322 33445666666654
No 92
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.55 E-value=25 Score=24.56 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=32.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
+.+|.++..+ -+.++..-..+|+.++.||+.||..+.+
T Consensus 16 ~e~i~qF~~i-Tg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 16 KGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4567777765 5788999999999999999999988765
No 93
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=41.16 E-value=85 Score=21.55 Aligned_cols=41 Identities=32% Similarity=0.459 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 183 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
|+-|+..+.+|.++|--| +| .-|.|..+++...+.|-.||-
T Consensus 5 naylrkkiarlkkdnlql--------er---------deqnlekiianlrdeiarlen 45 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQL--------ER---------DEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhh--------hh---------hHhhHHHHHHHHHHHHHHHHH
Confidence 556777888888877433 33 235666788888888888873
No 94
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=40.94 E-value=97 Score=26.81 Aligned_cols=46 Identities=20% Similarity=0.373 Sum_probs=34.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 190 LQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 190 l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
++.|..||..|..-+. .|.+|.+....+++.||.-+..++++...-
T Consensus 22 V~~L~~En~~L~~ql~---~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~ 67 (190)
T 4emc_A 22 VANLVNENFVLSEKLD---TKATEIKQLQKQIDSLNAQVKELKTQTSQQ 67 (190)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 5678889988887665 566677777778888888888888777543
No 95
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.75 E-value=27 Score=24.92 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=31.4
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 42 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
.++.++..+ -+-++..-..+|+.++.||+.||..+.+
T Consensus 19 ~~i~qF~~i-Tg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLA-AGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 456676665 6789999999999999999999998865
No 96
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=40.24 E-value=6.9 Score=26.79 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHhhchhhHHHHHHHHh
Q 025638 53 DVDPEVVKSVLGEHDNKIEDAIDRLR 78 (250)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~ 78 (250)
.+..++|..+|+.||.++..|.+.|.
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LG 43 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIG 43 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45788999999999999998888764
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.66 E-value=1.1e+02 Score=28.06 Aligned_cols=28 Identities=11% Similarity=-0.084 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025638 217 KEKEVELLKLVISQYQDQARNLEVIFLI 244 (250)
Q Consensus 217 ~~~E~~~lkq~v~qYqeqir~LE~~NYa 244 (250)
.+.|...+++....+|+++..|+..|-.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENAR 453 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhh
Confidence 4445555668888888888888776643
No 98
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=39.01 E-value=2.4e+02 Score=29.56 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=8.2
Q ss_pred CCHHHHHHHHhhch
Q 025638 54 VDPEVVKSVLGEHD 67 (250)
Q Consensus 54 md~q~le~aLe~cg 67 (250)
+|..+|-.=|.-||
T Consensus 695 fd~~~V~~QLr~~G 708 (1184)
T 1i84_S 695 LDAHLVLEQLRCNG 708 (1184)
T ss_dssp CCHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhhcC
Confidence 45566666666555
No 99
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=38.24 E-value=33 Score=28.73 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 44 l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
|..|..+ +.|+.-+..||..|+.|++.|+..|-.
T Consensus 167 V~~l~~M--Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 167 IENLCAM--GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4445544 778888999999999999999988753
No 100
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.22 E-value=31 Score=24.58 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=32.8
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 41 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
..+|.++..+=---|+..-..+|+.++-||+.||..+.+
T Consensus 19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456777777755478999999999999999999998876
No 101
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=37.97 E-value=1.8e+02 Score=28.12 Aligned_cols=72 Identities=19% Similarity=0.016 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH-------------HHH----HHHhhhhHHHH----HHH-HHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKA-------------VSI----QHERHLEQEQK----EKE-VELLKLVISQYQDQAR 236 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrA-------------v~i----Qh~R~~e~e~~----~~E-~~~lkq~v~qYqeqir 236 (250)
++.+...|+.+...+.++.+-+|+. +.. ......+.++. -.| ...||.-+....++++
T Consensus 49 ~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~le~~~~ 128 (484)
T 3lss_A 49 TQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQ 128 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777766661 000 00011223333 445 7778888888888888
Q ss_pred HHHhhhhhccccCC
Q 025638 237 NLEVIFLILTLLGP 250 (250)
Q Consensus 237 ~LE~~NYaLs~hl~ 250 (250)
.+|..-+.+-+.+|
T Consensus 129 ~~~~~~~~~l~~iP 142 (484)
T 3lss_A 129 QLEEERDKLMLNVG 142 (484)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCC
Confidence 88766655555554
No 102
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=37.90 E-value=32 Score=23.65 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 025638 53 DVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (250)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~~L 80 (250)
+.|.+-+.+||.-+.||++.|-.-|.+.
T Consensus 15 Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 15 GYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp TBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 6789999999999999999999888764
No 103
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=37.86 E-value=1.4e+02 Score=23.20 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q 025638 182 EHASLKEHLQSLLNDNQILKKAVS 205 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKrAv~ 205 (250)
+...||+.++.|-+||.=|++=+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555443
No 104
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=37.63 E-value=1.5e+02 Score=23.52 Aligned_cols=18 Identities=22% Similarity=0.106 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 025638 227 VISQYQDQARNLEVIFLI 244 (250)
Q Consensus 227 ~v~qYqeqir~LE~~NYa 244 (250)
-..+|++|++.|...|--
T Consensus 91 eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 91 KKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345566677776666543
No 105
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=37.45 E-value=60 Score=24.72 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=6.9
Q ss_pred HHHHHhhHHHHHHH
Q 025638 190 LQSLLNDNQILKKA 203 (250)
Q Consensus 190 l~~l~~eN~iLKrA 203 (250)
|...+.||.-|..-
T Consensus 41 L~eaL~EN~~Lh~~ 54 (83)
T 1uii_A 41 LYEALKENEKLHKE 54 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555433
No 106
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.26 E-value=53 Score=22.73 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 025638 182 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVI 228 (250)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v 228 (250)
....|...+..|..+|.-|+.= ......|+.+||++|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~----------v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELAST----------ANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 4455555666666666655532 233444555555554
No 107
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=37.07 E-value=51 Score=20.88 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 025638 218 EKEVELLKLVISQYQDQARNLEVI 241 (250)
Q Consensus 218 ~~E~~~lkq~v~qYqeqir~LE~~ 241 (250)
..++..|..+|...|+.+..||-.
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888999999999999864
No 108
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=37.00 E-value=79 Score=23.01 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 025638 197 NQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQ 232 (250)
Q Consensus 197 N~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYq 232 (250)
-.||+.||..=..-+.+.+....|+.+|++.+.+.+
T Consensus 42 a~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 42 SAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 468888877666666666666666666666555443
No 109
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=36.56 E-value=1.1e+02 Score=21.74 Aligned_cols=39 Identities=36% Similarity=0.413 Sum_probs=20.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 025638 189 HLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQ 230 (250)
Q Consensus 189 ~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~q 230 (250)
|+.+|..-|.-| |-.|||- ...+-++.||...|..++-|
T Consensus 12 q~~kLKq~n~~L--~~kv~~L-e~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 12 QLLRLKQMNVQL--AAKIQHL-EFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444454444433 3345554 22344567777777666654
No 110
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=36.21 E-value=37 Score=28.70 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=31.9
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 42 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
.-|..|..| +.|+..+-.||..|+.|.+.|+..|-+
T Consensus 132 eaI~rL~~m--GF~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 132 QAISRLCEL--GFERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp HHHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 347889988 799999999999999999999988865
No 111
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=35.55 E-value=16 Score=27.04 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=21.7
Q ss_pred CCHHHHHHHHhhchhhHHHHHHHHh
Q 025638 54 VDPEVVKSVLGEHDNKIEDAIDRLR 78 (250)
Q Consensus 54 md~q~le~aLe~cgndlDaAIksL~ 78 (250)
++.++|+.+|+.||.++..|-+.|.
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~LG 65 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRLN 65 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 4678999999999999999988764
No 112
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=35.46 E-value=18 Score=27.36 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHhhHHH
Q 025638 180 ELEHASLKEHLQSLLNDNQI 199 (250)
Q Consensus 180 ~kEn~~LKe~l~~l~~eN~i 199 (250)
.+|...||+++..|...|.-
T Consensus 14 REEVevLKe~I~EL~e~~~q 33 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQ 33 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554443
No 113
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=35.26 E-value=36 Score=30.01 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 025638 51 FPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (250)
Q Consensus 51 FP~md~q~le~aLe~cgndlDaAIksL~~L 80 (250)
++..|...|-+.|.+|..|++.|.+.|.+.
T Consensus 87 ~~~~dD~~LlRFLRarkfdv~kA~~~L~~~ 116 (316)
T 3hx3_A 87 VQEKDSGFFLRFIRARKFNVGRAYELLRGY 116 (316)
T ss_dssp TTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 678999999999999999999999998773
No 114
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=35.00 E-value=1.3e+02 Score=31.68 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=10.7
Q ss_pred CCHHHHHHHHhhchhhHH
Q 025638 54 VDPEVVKSVLGEHDNKIE 71 (250)
Q Consensus 54 md~q~le~aLe~cgndlD 71 (250)
+|..+|-.=|.-|| .|+
T Consensus 673 fd~~~V~~QLr~~G-vlE 689 (1080)
T 2dfs_A 673 FDEKRAVQQLRACG-VLE 689 (1080)
T ss_dssp CCHHHHHHHHHTTT-HHH
T ss_pred cCHHhhHHHHhhcc-cHH
Confidence 56666666666666 444
No 115
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=34.99 E-value=24 Score=27.48 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=29.3
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchh-hHHHHHHHHhh
Q 025638 42 DPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRV 79 (250)
Q Consensus 42 ~~l~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~ 79 (250)
..|.+|..| +.+....++||..||| |++.|+.-|..
T Consensus 5 ~~l~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~ 41 (126)
T 2lbc_A 5 SSVMQLAEM--GFPLEACRKAVYFTGNMGAEVAFNWIIV 41 (126)
T ss_dssp HHHHHHHTT--SSCCHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 446666664 5556899999999998 99999999977
No 116
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.57 E-value=1.1e+02 Score=22.63 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 025638 211 HLEQEQKEKEVELLKLVISQYQ 232 (250)
Q Consensus 211 ~~e~e~~~~E~~~lkq~v~qYq 232 (250)
.++.+++..+++.|+-.+++||
T Consensus 46 Ek~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 46 ELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4445566667777777777775
No 117
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=34.34 E-value=29 Score=24.28 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 025638 52 PDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (250)
Q Consensus 52 P~md~q~le~aLe~cgndlDaAIksL~~L 80 (250)
-.|-.+-=++.|+++|=|++.||..+.++
T Consensus 17 T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 17 TKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 36888889999999999999999999996
No 118
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=34.22 E-value=95 Score=23.91 Aligned_cols=13 Identities=15% Similarity=0.570 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHh
Q 025638 228 ISQYQDQARNLEV 240 (250)
Q Consensus 228 v~qYqeqir~LE~ 240 (250)
-.+|.|.|..|-.
T Consensus 70 Kq~YEeEI~rLr~ 82 (92)
T 3vp9_A 70 KDAYEEEIKHLKL 82 (92)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4578888777643
No 119
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.17 E-value=89 Score=21.04 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 212 LEQEQKEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 212 ~e~e~~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
+-++.-.+|...-++-+..||.+++.||-
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888999999999999985
No 120
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=33.64 E-value=1.3e+02 Score=22.79 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILK 201 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLK 201 (250)
+|++...+++.+..|..+|.-||
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777665
No 121
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=33.03 E-value=44 Score=31.28 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLILTLLGP 250 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~hl~ 250 (250)
++.|...|+.+...+.++.+-+|+. ..+.++.-.|+..||.-+....++++.+|-.-+.+-+.+|
T Consensus 42 ~~~~~~~l~~~~n~~sk~i~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 106 (425)
T 2dq3_A 42 IIKRLEALRSERNKLSKEIGKLKRE-------GKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIP 106 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGGGSS-------CSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344444444444444444443321 1233445567777777888888888887766666555554
No 122
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.83 E-value=1.2e+02 Score=20.96 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVS 205 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~ 205 (250)
+..||..|+.++..|..|..-||..|.
T Consensus 35 L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 35 LEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999988887663
No 123
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=32.69 E-value=79 Score=23.78 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKK 202 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKr 202 (250)
+|++...+++.+..|..+|..||-
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999988854
No 124
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=32.49 E-value=49 Score=28.34 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=29.8
Q ss_pred HHHHHhcC------CCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 44 VSFLLQMF------PDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 44 l~~L~~lF------P~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
|.+|+..+ +.+|...|-+.|.+|..|++.|.+.|.+
T Consensus 34 l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~ 75 (296)
T 1aua_A 34 LAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFEN 75 (296)
T ss_dssp HHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55565432 4589999999999999999999999976
No 125
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=32.21 E-value=1.8e+02 Score=22.81 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=37.0
Q ss_pred HHHHHHhhhhh-----hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 167 FERSIITNSKA-----SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 167 fEksi~~rs~a-----a~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
|-|+++..|-= ++.=+..-||-.++.+-....-|+| ++.++.+++..+|..++.-+.++..|
T Consensus 11 yrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~R----------e~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 11 YKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRR----------QYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666654422 1444666677777666666655544 55666677776666666666555544
No 126
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.40 E-value=1.3e+02 Score=25.79 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025638 185 SLKEHLQSLLNDNQILKKAVSIQHERHL---EQEQKEKEVELLKLVISQYQDQARNLEVI 241 (250)
Q Consensus 185 ~LKe~l~~l~~eN~iLKrAv~iQh~R~~---e~e~~~~E~~~lkq~v~qYqeqir~LE~~ 241 (250)
+++++|..|+.=-.|-.+...|.|.|.. +.++...++..++..+...+.++..++..
T Consensus 2 ~m~~~L~~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~ 61 (256)
T 3na7_A 2 GSNTHLKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQ 61 (256)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 127
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.25 E-value=76 Score=21.79 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 213 EQEQKEKEVELLKLVISQYQDQARNL 238 (250)
Q Consensus 213 e~e~~~~E~~~lkq~v~qYqeqir~L 238 (250)
|+|...+|++.||+-+..-++++..|
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444444443
No 128
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=31.10 E-value=68 Score=28.16 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQY 231 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qY 231 (250)
-=+||+-|.++++.+-.|+..||. ...++.+...++|.|..++.+.
T Consensus 113 aLeEN~~Lh~~ie~l~eEi~~Lke-------En~eLkeLae~~q~la~vi~~l 158 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNEIARLKK-------ENKELAEVAEHVQYMAELIERL 158 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 445888888888888888777764 2223333444555555555443
No 129
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=30.98 E-value=10 Score=32.11 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=43.4
Q ss_pred cccccccccccCCCCC-CCC---CCcccccCCCCCCC----------------CCCCCcHHHHHhcCCC--CCHHHHHHH
Q 025638 5 VCGKRVGFEEICGSSS-PTS---AKRSRCSTFGSLVR----------------SGSDDPVSFLLQMFPD--VDPEVVKSV 62 (250)
Q Consensus 5 VcGkRs~fedl~~s~~-p~~---sKR~Rcsss~sp~r----------------~~~~~~l~~L~~lFP~--md~q~le~a 62 (250)
++|-=..|++|+|..- |.+ --|.||.++ |++- .++++|-+.|..+||| .|++-|++.
T Consensus 23 ~~GPv~~F~~LfPa~Y~~~ta~FltR~R~~~~-S~~P~P~~~CLL~Ais~at~~s~~~LW~~Lc~~lPDSlL~n~ei~~~ 101 (160)
T 4a5u_A 23 AIGPVLPFEELHPRRYPENTATFLTRLRSLPS-NHLPQPTLNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTL 101 (160)
T ss_dssp EEEEEEEHHHHSCCCCCTTSSCSEEEEECSCC-CCCCCCSSCHHHHHHHHHHCCCHHHHHHHHTTTSCGGGTSSHHHHHH
T ss_pred ccCccccHHhhCCcccCCCCccccccccCCCC-CCCCCcchhhhHHHHhhccCCCHHHHHHHHHHhCchhhcCchhhhhc
Confidence 3455568889887642 332 279999776 4332 3337778889999998 565555432
Q ss_pred HhhchhhHHHHHHHHhhh
Q 025638 63 LGEHDNKIEDAIDRLRVL 80 (250)
Q Consensus 63 Le~cgndlDaAIksL~~L 80 (250)
. -.-|.=.|.-....+
T Consensus 102 -G-LSTDhltaLa~~~~~ 117 (160)
T 4a5u_A 102 -G-LSTEHLTALAHLYNF 117 (160)
T ss_dssp -C-CCHHHHHHHHHHHTE
T ss_pred -C-CcHHHHHHHHHHHhe
Confidence 1 112444555555554
No 130
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=30.16 E-value=1.9e+02 Score=22.37 Aligned_cols=48 Identities=31% Similarity=0.348 Sum_probs=22.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 025638 188 EHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLIL 245 (250)
Q Consensus 188 e~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~NYaL 245 (250)
+++..|..+..|.|.=| +-||. +.|..+.|.. +|++|++.|...|-.|
T Consensus 40 E~i~vLk~Qv~IY~~DF--~aERa-dREkl~~eKe-------~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADF--QAERH-AREKLVEKKE-------YLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHTTS-------HHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHH--HHHHH-HHHHHHhHHH-------HHHHHHHHHHHHHHHH
Confidence 44555555555555544 33442 3344444444 4555555555554443
No 131
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=29.27 E-value=41 Score=23.97 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhcc
Q 025638 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (250)
Q Consensus 44 l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (250)
++.|-.+ +.|.+-+.+||.-+.||++.|-.-|.+.-.
T Consensus 11 Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 11 IENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred HHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence 4555554 789999999999999999999999988644
No 132
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=29.27 E-value=25 Score=28.07 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025638 215 EQKEKEVELLKLVISQYQDQAR 236 (250)
Q Consensus 215 e~~~~E~~~lkq~v~qYqeqir 236 (250)
|..+.|..+|++-+..-|-|+.
T Consensus 86 Ekl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 86 EKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555443
No 133
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=28.21 E-value=82 Score=24.87 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025638 178 SKELEHASLKEHLQSLLNDNQILKKAV 204 (250)
Q Consensus 178 a~~kEn~~LKe~l~~l~~eN~iLKrAv 204 (250)
++++|....|+++..|..+..-||-.+
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~v 34 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTV 34 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888877777544
No 134
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=28.07 E-value=54 Score=21.97 Aligned_cols=35 Identities=9% Similarity=-0.019 Sum_probs=25.3
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHH
Q 025638 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDR 76 (250)
Q Consensus 42 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIks 76 (250)
.+|+++..+==--|+..-..+||.++-||+.|+-+
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 34555555433334588999999999999999854
No 135
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=28.06 E-value=2.4e+02 Score=22.77 Aligned_cols=10 Identities=10% Similarity=0.312 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 025638 155 DARGRAARIL 164 (250)
Q Consensus 155 DARaRAsRvL 164 (250)
||+++|.+||
T Consensus 10 eA~~~a~~I~ 19 (187)
T 3v6i_A 10 EVEAEIQALL 19 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 136
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.30 E-value=2.7e+02 Score=23.19 Aligned_cols=24 Identities=8% Similarity=-0.025 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 025638 217 KEKEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 217 ~~~E~~~lkq~v~qYqeqir~LE~ 240 (250)
.+-|+.-|+-.+..-+++++.||-
T Consensus 101 l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 101 LNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444
No 137
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=26.24 E-value=2 Score=31.20 Aligned_cols=29 Identities=7% Similarity=-0.084 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSIQ 207 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~iQ 207 (250)
..+|+..|+.++..|-.||.+||.+..-.
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~~~~~ 92 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAESCLEH 92 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGGGGTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678889999999999999999876543
No 138
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.23 E-value=90 Score=21.96 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKK 202 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKr 202 (250)
-+.....|..+++.|..+|.-|+.
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777787777776653
No 139
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=25.38 E-value=17 Score=24.82 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHhhchhhHHHHHHHHh
Q 025638 51 FPDVDPEVVKSVLGEHDNKIEDAIDRLR 78 (250)
Q Consensus 51 FP~md~q~le~aLe~cgndlDaAIksL~ 78 (250)
...++.++|+.+|+.|| +...|-+.|.
T Consensus 18 l~~~Er~~I~~aL~~~g-n~~~aA~~LG 44 (61)
T 1g2h_A 18 IGFYEAQVLKLFYAEYP-STRKLAQRLG 44 (61)
T ss_dssp CSHHHHHHHHHHHHHSC-SHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhC-CHHHHHHHhC
Confidence 34567889999999994 6666766553
No 140
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=25.04 E-value=1.6e+02 Score=19.80 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv 204 (250)
++.=|..|.+.+.-|.+||+.|+..+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 55567778888888888888887654
No 141
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=24.87 E-value=19 Score=26.35 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHhhchhhHHHHHHHHh
Q 025638 53 DVDPEVVKSVLGEHDNKIEDAIDRLR 78 (250)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~ 78 (250)
.++.++|+.+|+.||.++..|-+.|.
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LG 75 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLG 75 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45778999999999999888887664
No 142
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=24.67 E-value=1.1e+02 Score=23.46 Aligned_cols=53 Identities=21% Similarity=0.423 Sum_probs=37.6
Q ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHH-------------HHHHHHhhhhhhhhHHHHHHHHHHHHHHhh
Q 025638 140 VDLFVHEMMSA--ADLDDARGRAARILEV-------------FERSIITNSKASKELEHASLKEHLQSLLND 196 (250)
Q Consensus 140 VEl~V~EM~sA--sd~dDARaRAsRvLEa-------------fEksi~~rs~aa~~kEn~~LKe~l~~l~~e 196 (250)
|..+..+|.+- .|+.-||.|-...|.| ||..|..++.. ..+..|.+|+.|++.
T Consensus 12 vn~lID~~v~k~~~D~~~ar~~c~~ylnACss~~~~gp~DqkFqs~vi~CtlD----DQKkIkkRLe~Ll~~ 79 (88)
T 3cqx_C 12 ATRIIDEVVSKFLDDLGNAKSHLMSLYSACSSEVPPGPVDQKFQSIVIGCALE----DQKKIKRRLETLLRN 79 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHTSCHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHhcccHh----hHHHHHHHHHHHHHH
Confidence 44444444443 5889999999999865 88888887666 345667788888864
No 143
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=23.59 E-value=3e+02 Score=22.44 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 025638 157 RGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVI 228 (250)
Q Consensus 157 RaRAsRvLEafEksi~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKrAv~iQh~R~~e~e~~~~E~~~lkq~v 228 (250)
|..+.++++.||.++.-=..= . +..|...-+.-+..|-.=....+-.++-.-.+.+||..+..++.++|.-|
T Consensus 67 k~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL 140 (152)
T 4fla_A 67 KEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKEL 140 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777665542111 0 33333332222222222223333333344445556666555555544433
No 144
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=23.41 E-value=36 Score=25.74 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHhhchhhHHHHHHHHh
Q 025638 53 DVDPEVVKSVLGEHDNKIEDAIDRLR 78 (250)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~ 78 (250)
.++.++|+.+|+.||.+...|.+.|.
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LG 82 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMG 82 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 35678899999999999999988764
No 145
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.29 E-value=1.7e+02 Score=23.64 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 025638 215 EQKEKEVELLKLVISQYQDQARNLEVIFLILTLL 248 (250)
Q Consensus 215 e~~~~E~~~lkq~v~qYqeqir~LE~~NYaLs~h 248 (250)
++...|+..|+|-+-.--+.|..|-..|-.|+.|
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 3334466666666666666666665555544443
No 146
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.28 E-value=2.9e+02 Score=22.11 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=20.4
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHH
Q 025638 148 MSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQI 199 (250)
Q Consensus 148 ~sAsd~dDARaRAsRvLEafEksi~~rs~aa~~kEn~~LKe~l~~l~~eN~i 199 (250)
|.|-|+.|=--.+.+-.+.++.-+.. ..+|...||.++..+..++.-
T Consensus 61 LaALNiadEl~k~~~~~~~L~~~l~~-----~~kE~~~lK~el~~~~~k~e~ 107 (138)
T 3hnw_A 61 MMYLNIADDYFKAKKMADSLSLDIEN-----KDKEIYDLKHELIAAQIKAES 107 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555544 233444444444444333333
No 147
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.26 E-value=64 Score=21.68 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 025638 211 HLEQEQKEKEVELLKLVIS 229 (250)
Q Consensus 211 ~~e~e~~~~E~~~lkq~v~ 229 (250)
.+|+++++.|+..||..+.
T Consensus 12 iqeleernaelknlkehlk 30 (46)
T 3he4_B 12 IQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHhHHHHHH
Confidence 3578889999988887654
No 148
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.11 E-value=86 Score=28.13 Aligned_cols=19 Identities=5% Similarity=0.160 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025638 220 EVELLKLVISQYQDQARNL 238 (250)
Q Consensus 220 E~~~lkq~v~qYqeqir~L 238 (250)
+++.+++-+.+++++|..|
T Consensus 76 ~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 76 TLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4555555556666666555
No 149
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=23.09 E-value=41 Score=24.89 Aligned_cols=13 Identities=46% Similarity=0.723 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 025638 158 GRAARILEVFERS 170 (250)
Q Consensus 158 aRAsRvLEafEks 170 (250)
+||+|++|.+|..
T Consensus 39 nRAArlid~lE~~ 51 (73)
T 2ve8_A 39 NRAARMIEAMEMA 51 (73)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 7999999999974
No 150
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.83 E-value=4.5e+02 Score=25.72 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHh
Q 025638 160 AARILEVFERSIIT 173 (250)
Q Consensus 160 AsRvLEafEksi~~ 173 (250)
|..||+-|=++...
T Consensus 457 ~~~vl~~fl~~~~~ 470 (592)
T 1f5n_A 457 AEEILQTYLKSKES 470 (592)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555444443
No 151
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.34 E-value=2.4e+02 Score=24.66 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv 204 (250)
+|++...|++.+..|..+|.-||..+
T Consensus 120 Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 120 LHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999998888654
No 152
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=21.91 E-value=4.1e+02 Score=23.35 Aligned_cols=19 Identities=11% Similarity=0.357 Sum_probs=9.6
Q ss_pred HHHHhhchhhHHHHHHHHh
Q 025638 60 KSVLGEHDNKIEDAIDRLR 78 (250)
Q Consensus 60 e~aLe~cgndlDaAIksL~ 78 (250)
.+++.-..-.+++=|..|-
T Consensus 48 ~~~~~~f~~~~~a~~~~~~ 66 (248)
T 4e29_A 48 ETLIGRFSSAFSALAETLD 66 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4555444445555555553
No 153
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=21.85 E-value=58 Score=28.43 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHhhHH
Q 025638 179 KELEHASLKEHLQSLLNDNQ 198 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~ 198 (250)
+++||..||+++..|..++.
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~ 43 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLES 43 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655554443
No 154
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=21.82 E-value=30 Score=32.10 Aligned_cols=34 Identities=12% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 44 l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
|..|..| +++..++.+||.+|++|.+-|...|.+
T Consensus 329 I~rL~~m--GF~~~~a~~al~a~~~n~e~A~~~L~~ 362 (368)
T 1oqy_A 329 IERLKAL--GFPESLVIQAYFACEKNENLAANFLLS 362 (368)
T ss_dssp HHHHHHH--TCCSHHHHHHTSSSSSCSSHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhh
No 155
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=21.76 E-value=70 Score=28.77 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 51 FPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 51 FP~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
.|..|+..|-+.|.+|..|++.|.+.|.+
T Consensus 30 l~~~dD~~LlRFLrarkfdv~~A~~~l~~ 58 (403)
T 1olm_A 30 LPNPDDYFLLRWLRARSFDLQKSEAMLRK 58 (403)
T ss_dssp SSCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHhcCCCHHHHHHHHHH
Confidence 46799999999999999999999999977
No 156
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=21.29 E-value=79 Score=26.15 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHhhchhhHHHHHHHHhh
Q 025638 53 DVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (250)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~~ 79 (250)
..|+..|-+.|.+|..|++.|.+.|.+
T Consensus 30 ~~dd~~LlRFLra~k~dv~~A~~~l~~ 56 (262)
T 1r5l_A 30 PLTDSFLLRFLRARDFDLDLAWRLLKN 56 (262)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 479999999999999999999999976
No 157
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=21.20 E-value=1.1e+02 Score=21.39 Aligned_cols=45 Identities=11% Similarity=0.067 Sum_probs=39.5
Q ss_pred CCCCCCCCCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHh
Q 025638 34 SLVRSGSDDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLR 78 (250)
Q Consensus 34 sp~r~~~~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~ 78 (250)
.|.-+-|++++.+-....|+-..+++-+-|+-.+=|+.-|+--|.
T Consensus 3 ~p~~~vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlL 47 (53)
T 2qho_B 3 IPASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLL 47 (53)
T ss_dssp CCGGGSCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CccccCcHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHh
Confidence 355566789999999999999999999999999999999987654
No 158
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.17 E-value=5.6e+02 Score=24.64 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 025638 219 KEVELLKLVISQYQDQARNLEV 240 (250)
Q Consensus 219 ~E~~~lkq~v~qYqeqir~LE~ 240 (250)
..++.|+.++.++.++|..||-
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~ 189 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLEN 189 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777664
No 159
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.02 E-value=1.9e+02 Score=20.67 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKK 202 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKr 202 (250)
++.++..|+.+++.|-++|.-|+.
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666655554
No 160
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.85 E-value=2.7e+02 Score=25.43 Aligned_cols=22 Identities=9% Similarity=0.074 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025638 214 QEQKEKEVELLKLVISQYQDQA 235 (250)
Q Consensus 214 ~e~~~~E~~~lkq~v~qYqeqi 235 (250)
++..+..+++|++.|.+..+++
T Consensus 35 l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 35 WRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666665555543
No 161
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.68 E-value=79 Score=23.04 Aligned_cols=24 Identities=25% Similarity=0.291 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 025638 213 EQEQKEKEVELLKLVISQYQDQAR 236 (250)
Q Consensus 213 e~e~~~~E~~~lkq~v~qYqeqir 236 (250)
+++++..|+++|+..+.+||.=++
T Consensus 33 ~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 33 RLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356688899999999999986554
No 162
>3bei_A Prothrombin; serine protease, acute phase, blood coagulation, cleavage on basic residues, disease mutation, gamma-carboxyglutamic ACI glycoprotein; HET: NAG; 1.55A {Homo sapiens} PDB: 1tq7_A* 3lu9_A* 3bef_A* 2pgq_A* 1z8j_A* 1z8i_A* 3hk3_A 2pv9_A* 3edx_A* 2pux_A 3hk6_A 3hki_A* 2ocv_A* 1avg_L 2a1d_A*
Probab=20.60 E-value=29 Score=23.62 Aligned_cols=12 Identities=42% Similarity=0.606 Sum_probs=10.1
Q ss_pred cccccccccccc
Q 025638 4 GVCGKRVGFEEI 15 (250)
Q Consensus 4 ~VcGkRs~fedl 15 (250)
.+||.|.+||-.
T Consensus 15 ~dCG~RPlFEk~ 26 (44)
T 3bei_A 15 ADCGLRPLFEKK 26 (44)
T ss_dssp TTTTCCTTTGGG
T ss_pred cccccchhHHHh
Confidence 589999999874
No 163
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=20.57 E-value=2.2e+02 Score=22.10 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=25.3
Q ss_pred hhhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHhh
Q 025638 210 RHLEQEQKEKEVELLKLVIS------------QYQDQARNLEVI 241 (250)
Q Consensus 210 R~~e~e~~~~E~~~lkq~v~------------qYqeqir~LE~~ 241 (250)
+...+++...+++.|...|+ +||+.|.+|.-.
T Consensus 56 ~~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~ 99 (111)
T 2l3l_A 56 SVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAA 99 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHH
Confidence 66668888888888888875 789999988643
No 164
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.33 E-value=2.5e+02 Score=26.48 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 025638 218 EKEVELLKLVIS 229 (250)
Q Consensus 218 ~~E~~~lkq~v~ 229 (250)
+..+++|++.|.
T Consensus 118 ~~~i~~l~~~i~ 129 (409)
T 1m1j_C 118 SNKITQLKQKIA 129 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444433333
No 165
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.12 E-value=1e+02 Score=23.57 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=19.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025638 207 QHERHLEQEQKEKEVELLKLVISQYQDQARNLEVI 241 (250)
Q Consensus 207 Qh~R~~e~e~~~~E~~~lkq~v~qYqeqir~LE~~ 241 (250)
.|-|.|..+. ++..|++-+...+++|+.|.-.
T Consensus 5 ~~~~~~~l~~---~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 5 HHHRMKQLED---KVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp ----CHHHHH---HHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCC
Confidence 4667766555 5556666788888888877643
No 166
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.09 E-value=3.3e+02 Score=26.21 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025638 218 EKEVELLKLVISQYQDQARN 237 (250)
Q Consensus 218 ~~E~~~lkq~v~qYqeqir~ 237 (250)
..++..|+..+.+.++++..
T Consensus 84 ~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 84 SNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666544
No 167
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=20.08 E-value=4e+02 Score=22.50 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 025638 179 KELEHASLKEHLQSLLNDNQILKKAVSI 206 (250)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKrAv~i 206 (250)
++.....+|.++..++.+-..|+.-+..
T Consensus 84 l~~~Le~~r~~l~~~l~~~~~L~~~~~~ 111 (192)
T 2p22_C 84 NFEDLHEQKDKVQALLENARILESKYVA 111 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666667777777776633
Done!