BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025639
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/223 (79%), Positives = 194/223 (86%), Gaps = 2/223 (0%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
KIKIGINGFGRIGRLVARVALQ +DVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+++K
Sbjct: 3 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIK 62
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
+KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFT VV
Sbjct: 63 IKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVV 122
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
ISAPSKDAPMFV GVNE +Y ++DIVSNASCTTNCLAPLAKVIHD FGI+EGLMTTVH+
Sbjct: 123 ISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHA 182
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAK +VG+V+
Sbjct: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAK--AVGKVL 223
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/223 (79%), Positives = 194/223 (86%), Gaps = 2/223 (0%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
KIKIGINGFGRIGRLVARVALQ +DVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+++K
Sbjct: 2 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIK 61
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
+KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFT VV
Sbjct: 62 IKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVV 121
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
ISAPSKDAPMFV GVNE +Y ++DIVSNASCTTNCLAPLAKVIHD FGI+EGLMTTVH+
Sbjct: 122 ISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHA 181
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAK +VG+V+
Sbjct: 182 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAK--AVGKVL 222
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
Length = 333
Score = 277 bits (709), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 141/221 (63%), Positives = 169/221 (76%), Gaps = 5/221 (2%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
KIGINGFGRIGRLV R AL+ ++VAVNDPFI+ +YM YMFKYDS HG +K E+KV+
Sbjct: 2 KIGINGFGRIGRLVLRTALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKVE 59
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D ++ G+K + VF PE IPW+K GAEY+VESTGVFT V+IS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
APS DAPMFV GVN ++Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAK +VG+VI
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAK--AVGKVI 217
>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1SZJ|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
Length = 333
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 140/221 (63%), Positives = 168/221 (76%), Gaps = 5/221 (2%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
KIGINGFGRIGRLV R AL+ ++VAVNDPFI+ +YM YMFKYDS HG +K E+K +
Sbjct: 2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKAE 59
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D ++ G+K + VF PE IPW+K GAEY+VESTGVFT V+IS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
APS DAPMFV GVN ++Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAK +VG+VI
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAK--AVGKVI 217
>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|P Chain P, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|R Chain R, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|Q Chain Q, Crsytal Structure Of Human Liver Gapdh
Length = 338
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 137/223 (61%), Positives = 165/223 (73%), Gaps = 4/223 (1%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
K+K+G+NGFGRIGRLV R A V++VA+NDPFI +YM YMF+YDS HG++ H +K
Sbjct: 6 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVK 64
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
++ K ++ G P+ +F R+P +I W GAEYVVESTGVFT V+
Sbjct: 65 AENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 123
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
ISAPS DAPMFV+GVN ++Y L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTVH+
Sbjct: 124 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 183
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
ITATQKTVDGPS K WR GR A NIIP+STGAAK +VG+VI
Sbjct: 184 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAK--AVGKVI 224
>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|P Chain P, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|Q Chain Q, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|R Chain R, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
Length = 335
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/223 (61%), Positives = 165/223 (73%), Gaps = 4/223 (1%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
K+K+G+NGFGRIGRLV R A V++VA+NDPFI +YM YMF+YDS HG++ H +K
Sbjct: 3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVK 61
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
++ K ++ G P+ +F R+P +I W GAEYVVESTGVFT V+
Sbjct: 62 AENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 120
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
ISAPS DAPMFV+GVN ++Y L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTVH+
Sbjct: 121 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 180
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
ITATQKTVDGPS K WR GR A NIIP+STGAAK +VG+VI
Sbjct: 181 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAK--AVGKVI 221
>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|1GPD|R Chain R, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 274 bits (701), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 141/221 (63%), Positives = 168/221 (76%), Gaps = 5/221 (2%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
KIGINGFGRIGRLV R AL ++VAVNDPFI+ +YM YMFKYDS HG +K E+K++
Sbjct: 3 KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFK-GEVKME 60
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D ++ G+K + VF PE IPW+K GAEY+VESTGVFT VVIS
Sbjct: 61 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVIS 119
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
APS DAPMFV GVN ++Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 120 APSADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 179
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAK +VG+VI
Sbjct: 180 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAK--AVGKVI 218
>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|2 Chain 2, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|3 Chain 3, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|4 Chain 4, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
Length = 333
Score = 274 bits (701), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 141/221 (63%), Positives = 168/221 (76%), Gaps = 5/221 (2%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
KIGINGFGRIGRLV R AL ++VAVNDPFI+ +YM YMFKYDS HG +K E+K++
Sbjct: 2 KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFK-GEVKME 59
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D ++ G+K + VF PE IPW+K GAEY+VESTGVFT VVIS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
APS DAPMFV GVN ++Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAK +VG+VI
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAK--AVGKVI 217
>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
pdb|2I5P|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
Length = 342
Score = 273 bits (697), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 140/226 (61%), Positives = 167/226 (73%), Gaps = 5/226 (2%)
Query: 3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
G + + I INGFGRIGRLV R+AL+R ++++VA+NDPFIS DY YMFKYDS HG++K
Sbjct: 11 GIQMVSIAINGFGRIGRLVLRIALERKNIDVVAINDPFISVDYAAYMFKYDSTHGKYK-G 69
Query: 63 ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
E+ D L+ K VAVF ++P +PW K G + V+STGVF
Sbjct: 70 EVS-HDGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAK 128
Query: 123 XVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
VVI+APSK APMFVVGVNE +Y E IVSNASCTTNCLAP+AK+I+D+FGI EGLMTT
Sbjct: 129 KVVITAPSKTAPMFVVGVNEDKYNGE-KIVSNASCTTNCLAPIAKIINDEFGIEEGLMTT 187
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
VHSITATQKTVDGPS KDWRGGR AS NIIPSSTGAAK +VG+V+
Sbjct: 188 VHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAK--AVGKVL 231
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
Length = 333
Score = 271 bits (693), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 139/221 (62%), Positives = 167/221 (75%), Gaps = 5/221 (2%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
KIGINGFGRIGRLV R AL+ ++VAVNDPFI+ +YM YMFKYDS HG +K E+K +
Sbjct: 2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKAE 59
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D ++ G+K + VF PE IPW+K GAEY+VESTGVFT V+IS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
APS DAPMFV GVN ++Y ++ +VSNAS TTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASXTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAK +VG+VI
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAK--AVGKVI 217
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 334
Score = 269 bits (687), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 135/223 (60%), Positives = 162/223 (72%), Gaps = 4/223 (1%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
K+K+G++GFGRIGRLV R A V++VA+NDPFI YM YMF+YDS HG++ H +K
Sbjct: 2 KVKVGVDGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVK 60
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
+D K ++ G K + +F R+PE I W G YVVESTGVFT +V
Sbjct: 61 AEDGKLVIDG-KAITIFQERDPENIKWGDAGTAYVVESTGVFTTMEKAGAHLKGGAKRIV 119
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
ISAPS DAPMFV+GVN +Y L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTVH+
Sbjct: 120 ISAPSADAPMFVMGVNHFKYANSLKIISNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 179
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
ITATQKTVD PS K WRGGR A+ N+IP+STGAAK +VG+VI
Sbjct: 180 ITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAK--AVGKVI 220
>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase 3 From Saccharomyces Cerevisiae
Length = 340
Score = 268 bits (686), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/222 (59%), Positives = 164/222 (73%), Gaps = 4/222 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+++ INGFGRIGRLV R+AL R +VE+VA+NDPFI+ DY YMFKYDS HG++ E+
Sbjct: 10 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYA-GEVS- 67
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D+K ++ K +A + R+P +PW + + ++STGVF VVI
Sbjct: 68 HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 127
Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
+APS APMFV+GVNE++Y +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 128 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 187
Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAK +VG+V+
Sbjct: 188 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAK--AVGKVL 227
>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
pdb|3PYM|B Chain B, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
Length = 332
Score = 268 bits (686), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/222 (59%), Positives = 164/222 (73%), Gaps = 4/222 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+++ INGFGRIGRLV R+AL R +VE+VA+NDPFI+ DY YMFKYDS HG++ E+
Sbjct: 2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYA-GEVS- 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D+K ++ K +A + R+P +PW + + ++STGVF VVI
Sbjct: 60 HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119
Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
+APS APMFV+GVNE++Y +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 120 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 179
Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAK +VG+V+
Sbjct: 180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAK--AVGKVL 219
>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|P Chain P, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|Q Chain Q, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|R Chain R, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
Length = 332
Score = 267 bits (683), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 136/222 (61%), Positives = 162/222 (72%), Gaps = 4/222 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+G+NGFGRIGRLV R A V++VA+NDPFI YM YMF+YDS HG++ H +K
Sbjct: 1 VKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKA 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
++ K ++ G K + +F R+P I W GAEYVVESTGVFT V+I
Sbjct: 60 ENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVII 118
Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
SAPS DAPMFV+GVN ++Y L IVSNAS TTNCLAPLAKVIHD FGIVEGLMTTVH+I
Sbjct: 119 SAPSADAPMFVMGVNHEKYDNSLKIVSNASXTTNCLAPLAKVIHDHFGIVEGLMTTVHAI 178
Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TATQKTVDGPS K WR GR A+ NIIP+STGAAK +VG+VI
Sbjct: 179 TATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAK--AVGKVI 218
>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
Length = 361
Score = 262 bits (669), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 133/229 (58%), Positives = 162/229 (70%), Gaps = 7/229 (3%)
Query: 3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
G K+GINGFGRIGRLV R A++R DVE++A+NDPF+S DYM Y+ +YDSVHG +
Sbjct: 20 GSMVCKLGINGFGRIGRLVFRAAMERGDVEVLAINDPFMSLDYMVYLLRYDSVHGHYP-G 78
Query: 63 ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
E+ KD K L+ G K V VF + P IPW + G Y+ ESTG+F
Sbjct: 79 EVSHKDGK-LIVGGKAVTVFNEKEPTAIPWGQAGVHYICESTGIFLTKEKAQAHLTNGAK 137
Query: 123 XVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
V++SAP KD PMFV+GVN +YK IVSNASCTTNCLAPLAK++HDKFGIVEGLMT
Sbjct: 138 KVIMSAPPKDDTPMFVMGVNNDQYKSSDVIVSNASCTTNCLAPLAKIVHDKFGIVEGLMT 197
Query: 182 TVHSITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TVH++TA Q TVDGPS KDWR GR+A NIIP+STGAAK +VG++I
Sbjct: 198 TVHAMTANQLTVDGPSKGGKDWRAGRSAGVNIIPASTGAAK--AVGKII 244
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 259 bits (663), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 133/223 (59%), Positives = 165/223 (73%), Gaps = 6/223 (2%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGRLV RV +++ V +VAVNDPFI +YM YMFKYDS HG++K ++
Sbjct: 2 VKVGINGFGRIGRLVLRVCMEKG-VRVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GTVEH 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
K+ + L+ + VF + P+EIPW+ G YVVE+TGV+ V++
Sbjct: 60 KNGR-LVVDNLEINVFQXKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIV 118
Query: 127 SAPSKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
+APS DAPM V+GVNEK+Y P + +VSNAS TTNCLAPLAKVIH++FGIVEGLMTTVH+
Sbjct: 119 TAPSPDAPMLVMGVNEKDYNPGSMTVVSNASXTTNCLAPLAKVIHERFGIVEGLMTTVHA 178
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TATQKTVDGPS KDWRGGR A NIIPSSTGAAK +VG+VI
Sbjct: 179 YTATQKTVDGPSKKDWRGGRGAHQNIIPSSTGAAK--AVGKVI 219
>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
Length = 346
Score = 258 bits (659), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/217 (58%), Positives = 161/217 (74%), Gaps = 4/217 (1%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
+++ +GINGFGRIGRLV R +++ V++VAVNDPFI +YM YMFKYDS HG++K +
Sbjct: 6 RELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GSV 63
Query: 65 KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXV 124
+ ++ + L+ ++V+ + P++IPW G+ YVVESTGV+ V
Sbjct: 64 EFRNGQ-LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRV 122
Query: 125 VISAPSKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
VISAPS DAPMFV+GVNE +Y P ++IVSNASCTTNCLAPLAKVIH++FGIVEGLMTTV
Sbjct: 123 VISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTV 182
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
HS TATQKTVDGPS K WR GR A NIIP+STGAAK
Sbjct: 183 HSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAK 219
>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|B Chain B, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|C Chain C, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|D Chain D, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|A Chain A, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|B Chain B, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|C Chain C, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|D Chain D, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 253 bits (647), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 131/225 (58%), Positives = 160/225 (71%), Gaps = 10/225 (4%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVK 67
+GINGFGRIGRLV R ++R+D+ +VA+NDPF+ +YM Y+ KYDSVHG + E+ K
Sbjct: 25 LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 84
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D L K V VF ++P EIPW +GA+ V ESTGVFT V+IS
Sbjct: 85 D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 128 APSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
AP KD PM+V+GVN EY P + +++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHS 201
Query: 186 ITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
+TA Q TVDGPS KDWR GR A NIIP+STGAAK +VG+VI
Sbjct: 202 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAK--AVGKVI 244
>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|3CPS|B Chain B, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 354
Score = 253 bits (647), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 131/225 (58%), Positives = 160/225 (71%), Gaps = 10/225 (4%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVK 67
+GINGFGRIGRLV R ++R+D+ +VA+NDPF+ +YM Y+ KYDSVHG + E+ K
Sbjct: 20 LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 79
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D L K V VF ++P EIPW +GA+ V ESTGVFT V+IS
Sbjct: 80 D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 136
Query: 128 APSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
AP KD PM+V+GVN EY P + +++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 137 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHS 196
Query: 186 ITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
+TA Q TVDGPS KDWR GR A NIIP+STGAAK +VG+VI
Sbjct: 197 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAK--AVGKVI 239
>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|B Chain B, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|C Chain C, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|D Chain D, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 249 bits (637), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 130/225 (57%), Positives = 159/225 (70%), Gaps = 10/225 (4%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVK 67
+GINGFGRIGRLV R ++R+D+ +VA+NDPF+ +YM Y+ KYDSVHG + E+ K
Sbjct: 25 LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 84
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D L K V VF ++P EIPW +GA+ V ESTGVFT V+IS
Sbjct: 85 D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 128 APSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
AP KD PM+V+GVN EY P + +++SNAS TTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASSTTNCLAPLAKIINDKFGIVEGLMTTVHS 201
Query: 186 ITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
+TA Q TVDGPS KDWR GR A NIIP+STGAAK +VG+VI
Sbjct: 202 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAK--AVGKVI 244
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 241 bits (616), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/223 (56%), Positives = 158/223 (70%), Gaps = 7/223 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
IK+GINGFGRIGR+V R A +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
KD ++ G+K + V R+P + W + G + V E+TG+F VV+
Sbjct: 60 KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
+ PSKD PMFV G N +Y + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAK +VG+V+
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAK--AVGKVL 218
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 241 bits (616), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/223 (56%), Positives = 158/223 (70%), Gaps = 7/223 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
IK+GINGFGRIGR+V R A +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
KD ++ G+K + V R+P + W + G + V E+TG+F VV+
Sbjct: 60 KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
+ PSKD PMFV G N +Y + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAK +VG+V+
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAK--AVGKVL 218
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 241 bits (616), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/223 (56%), Positives = 158/223 (70%), Gaps = 7/223 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
IK+GINGFGRIGR+V R A +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEV 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
KD ++ G+K + V R+P + W + G + V E+TG+F VV+
Sbjct: 61 KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
+ PSKD PMFV G N +Y + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 178
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAK +VG+V+
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAK--AVGKVL 219
>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|P Chain P, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|Q Chain Q, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|R Chain R, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
Length = 337
Score = 240 bits (613), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 124/224 (55%), Positives = 155/224 (69%), Gaps = 7/224 (3%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
K+GINGFGRIGRLV R A R D+E+VA+NDPF+ +++ Y+ KYDSVHGQ+
Sbjct: 5 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHA- 63
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
+ LL GEK V+VF ++P +IPW K + V ESTGVF V++S
Sbjct: 64 -DGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 122
Query: 128 APSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
AP KD P++V+G+N +Y + IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH+
Sbjct: 123 APPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAS 182
Query: 187 TATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TA Q VDGPS KDWR GR A NIIP+STGAAK +VG+V+
Sbjct: 183 TANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAK--AVGKVL 224
>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
Length = 345
Score = 240 bits (613), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 124/224 (55%), Positives = 155/224 (69%), Gaps = 7/224 (3%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
K+GINGFGRIGRLV R A R D+E+VA+NDPF+ +++ Y+ KYDSVHGQ+
Sbjct: 13 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHA- 71
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
+ LL GEK V+VF ++P +IPW K + V ESTGVF V++S
Sbjct: 72 -DGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 130
Query: 128 APSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
AP KD P++V+G+N +Y + IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH+
Sbjct: 131 APPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAS 190
Query: 187 TATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TA Q VDGPS KDWR GR A NIIP+STGAAK +VG+V+
Sbjct: 191 TANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAK--AVGKVL 232
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 237 bits (605), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 126/223 (56%), Positives = 157/223 (70%), Gaps = 7/223 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
IK+GINGFGRIGR+V R A +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEV 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
KD ++ G+K + V R+P + W + G + V E+TG+F VV+
Sbjct: 61 KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
+ PSKD PMFV G N +Y + DIVSNAS TTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASXTTNCLAPLAKVINDNFGIIEGLMTTVHA 178
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAK +VG+V+
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAK--AVGKVL 219
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/236 (52%), Positives = 152/236 (64%), Gaps = 16/236 (6%)
Query: 7 IKIGINGFGRIGRLVARV----ALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
IK+GINGFGRIGR+V + L +++++VAV D Y Y KYDSVHG++KH+
Sbjct: 3 IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHS 62
Query: 63 ELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXX 115
K D+ ++ G + + V RNP ++PW K G EYV+ESTG+FT
Sbjct: 63 VSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEG 122
Query: 116 XXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKV-IHDK 172
VVISAP S A FV+GVN Y P E +VSNASCTTNCLAPL V + +
Sbjct: 123 HLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEG 182
Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
FGI GLMTTVHS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAK +VG VI
Sbjct: 183 FGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAK--AVGMVI 236
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 213 bits (543), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 123/223 (55%), Positives = 153/223 (68%), Gaps = 7/223 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
IK+GINGFGRIGR+V R A +R D+E+VA+ND + DY Y KYDS HG++ ++V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYXAYXLKYDSTHGRF-DGTVEV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
KD ++ G+K + V R+P + W + G + V E+TG+F VV
Sbjct: 60 KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVX 118
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
+ PSKD P FV G N +Y + DIVSNASCTTNCLAPLAKVI+D FGI+EGL TTVH+
Sbjct: 119 TGPSKDNTPXFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLXTTVHA 177
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAK +VG+V+
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAK--AVGKVL 218
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 211 bits (538), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/237 (50%), Positives = 153/237 (64%), Gaps = 18/237 (7%)
Query: 7 IKIGINGFGRIGRLVARVALQRD-----DVELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
IK+GINGFGRIGR+V + AL D ++++VAV D +Y Y +YD+VHG++K+
Sbjct: 3 IKVGINGFGRIGRMVFQ-ALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61
Query: 62 NELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXX 114
K D+ ++ G + + V RNP ++PW K G EYV+ESTG+FT
Sbjct: 62 EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121
Query: 115 XXXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKV-IHD 171
VVISAP S A V+GVN EY P E +VSNASCTTNCLAP+ V + +
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKE 181
Query: 172 KFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
FG+ GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAK +VG VI
Sbjct: 182 GFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAK--AVGMVI 236
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 207 bits (526), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/237 (50%), Positives = 152/237 (64%), Gaps = 18/237 (7%)
Query: 7 IKIGINGFGRIGRLVARVALQRD-----DVELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
IK+GINGFGRIGR+V + AL D ++++VAV D +Y Y +YD+VHG++K+
Sbjct: 3 IKVGINGFGRIGRMVFQ-ALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61
Query: 62 NELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXX 114
K D+ ++ G + + V RNP ++PW K G EYV+ESTG+FT
Sbjct: 62 EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121
Query: 115 XXXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKV-IHD 171
VVISAP S A V+GVN EY P E +VSNAS TTNCLAP+ V + +
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASXTTNCLAPIVHVLVKE 181
Query: 172 KFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
FG+ GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAK +VG VI
Sbjct: 182 GFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAK--AVGMVI 236
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 203 bits (516), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 150/236 (63%), Gaps = 16/236 (6%)
Query: 7 IKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
IK+GINGFGRIGR+V + + ++++VAV D + +Y Y K+D+VHG+ K+
Sbjct: 3 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 63 ELKVKDEKTL-------LFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXX 115
VK ++ + G + V RNP ++PW K G +YV+ESTG+FT
Sbjct: 63 VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 116 XXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVI-HDK 172
VVISAP S A V+GVN+ EY P +VSNASCTTNCLAP+ V+ +
Sbjct: 123 HIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKEN 182
Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
FGI GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAK +VG VI
Sbjct: 183 FGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAK--AVGMVI 236
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 203 bits (516), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 150/236 (63%), Gaps = 16/236 (6%)
Query: 7 IKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
IK+GINGFGRIGR+V + + ++++VAV D + +Y Y K+D+VHG+ K+
Sbjct: 3 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 63 ELKVKDEKTL-------LFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXX 115
VK ++ + G + V RNP ++PW K G +YV+ESTG+FT
Sbjct: 63 VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 116 XXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVI-HDK 172
VVISAP S A V+GVN+ EY P +VSNASCTTNCLAP+ V+ +
Sbjct: 123 HIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKEN 182
Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
FGI GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAK +VG VI
Sbjct: 183 FGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAK--AVGMVI 236
>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|P Chain P, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|Q Chain Q, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|2GD1|O Chain O, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|P Chain P, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|Q Chain Q, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|R Chain R, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|3CMC|O Chain O, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|P Chain P, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|Q Chain Q, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|R Chain R, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
Length = 334
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 142/216 (65%), Gaps = 6/216 (2%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R AL+ D+E+VAVND + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
++ G K + V R+PE + W + G + VVESTG FT V+I
Sbjct: 60 NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
SAP+K+ + V+GVN+ +Y P+ ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
S T Q+ +D P KD R RAA+ +IIP++TGAAK
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAK 213
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 191 bits (484), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 142/216 (65%), Gaps = 6/216 (2%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R AL+ D+E+VAVND + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDTG-GANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
++ G K + V R+PE + W + G + VVESTG FT V+I
Sbjct: 60 NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
SAP+K+ + V+GVN+ +Y P+ ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
S T Q+ +D S KD R RAA+ +IIP++TGAAK
Sbjct: 179 SYTNDQRILDA-SHKDLRRARAAAESIIPTTTGAAK 213
>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 189 bits (481), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 141/216 (65%), Gaps = 6/216 (2%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R AL+ D+E+VAVN + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNG-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
++ G K + V R+PE + W + G + VVESTG FT V+I
Sbjct: 60 NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
SAP+K+ + V+GVN+ +Y P+ ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
S T Q+ +D S KD R RAA+ +IIP++TGAAK
Sbjct: 179 SYTNDQRILDA-SHKDLRRARAAAESIIPTTTGAAK 213
>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NQA|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
Length = 334
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 141/216 (65%), Gaps = 6/216 (2%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R AL+ D+E+VAVND + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
++ G K + V R+PE + W + G + VVESTG FT V+I
Sbjct: 60 NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
SAP+K+ + V+GVN+ +Y P+ ++SNAS TTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
S T Q+ +D P KD R RAA+ +IIP++TGAAK
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAK 213
>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQO|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
Length = 334
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 141/216 (65%), Gaps = 6/216 (2%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R AL+ D+E+VAVND + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
++ G K + V R+PE + W + G + VVESTG FT V+I
Sbjct: 60 NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
SAP+K+ + V+GVN+ +Y P+ ++SNAS TTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
S T Q+ +D P KD R RAA+ +IIP++TGAAK
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAK 213
>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
pdb|2EP7|B Chain B, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
Length = 342
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 149/224 (66%), Gaps = 8/224 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
IK+GINGFGRIGR R + R+++E+VA+ND ++ ++ KYDSVHG +K ++
Sbjct: 3 IKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFK-GSVEA 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
KD+ ++ G K + VF ++P +IPW G + V+E+TGVF V+I
Sbjct: 61 KDDSIVVDG-KEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII 119
Query: 127 SAPSKDAPMFVV-GVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
+AP+K+ + VV GVNE++Y P E +I+SNASCTTNCLAP KV+++ FG+ +G M TVH
Sbjct: 120 TAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVH 179
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
+ T Q+ +D P KD+R RAA+ NI+P++TGAAK ++G VI
Sbjct: 180 AYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAK--AIGEVI 220
>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
pdb|1HDG|Q Chain Q, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
Length = 332
Score = 184 bits (466), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 8 KIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
++ INGFGRIGRLV R+ +R D+E+VA+ND T + ++ KYDSVH ++ K
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG---K 57
Query: 66 VK-DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXV 124
V+ E +L+ K + VF +P ++PW G ++V+ESTGVF V
Sbjct: 58 VEYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKV 117
Query: 125 VISAPSKDAPM-FVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
+I+AP+K + V+G NE + KPE I+S ASCTTN +AP+ KV+H+KFGIV G++TTV
Sbjct: 118 IITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTV 177
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
HS T Q+ +D P KD R RAA+ NIIP++TGAAK
Sbjct: 178 HSYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAK 213
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 153/253 (60%), Gaps = 14/253 (5%)
Query: 3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
G +K+ INGFGRIGR V ++A +R +++VA+ND + ++ KYDS G + +
Sbjct: 18 GPGSMKLAINGFGRIGRNVFKIAFERG-IDIVAIND-LTDPKTLAHLLKYDSTFGVY-NK 74
Query: 63 ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXX-----XXX 117
+++ +D ++ G + + + R+P+ +PWAK G + V+ESTGVF+
Sbjct: 75 KVESRDGAIVVDG-REIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVN 133
Query: 118 XXXXXXVVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV 176
V+++ P+KD V+GVN+ + +L VSNASCTTNCLAPLAKV+H+ FGI
Sbjct: 134 HAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIE 193
Query: 177 EGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLA 236
+GLMTTVH+ T Q+ +D P D R RAA+ +IIP+STGAAK +VG +++ G
Sbjct: 194 QGLMTTVHAYTNDQRILDLPH-SDLRRARAAALSIIPTSTGAAK--AVG-LVLPELKGKL 249
Query: 237 NSKISIIPYLTGS 249
N +P TGS
Sbjct: 250 NGTSMRVPVPTGS 262
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|B Chain B, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|C Chain C, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|D Chain D, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|E Chain E, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|F Chain F, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|G Chain G, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|H Chain H, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
Length = 345
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 132/215 (61%), Gaps = 6/215 (2%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
++ INGFGRIGR+V R A++ E+VA+N + S + + ++ KYD+VHG++ +
Sbjct: 6 RVAINGFGRIGRMVFRQAIKESAFEIVAINASYPS-ETLAHLIKYDTVHGKFDGTVEAFE 64
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D LL K + + R+P+E+PW G E V+E+TG F V+++
Sbjct: 65 DH--LLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILT 122
Query: 128 APSKDAPM-FVVGVNEKEYK-PELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
AP K+ + VVGVNE + + ++SNASCTTNCLAP+ KV+ ++FGI GLMTTVH+
Sbjct: 123 APGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHA 182
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
T QK +D P KD R RA +IIP++TGAAK
Sbjct: 183 YTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAK 216
>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|A Chain A, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|B Chain B, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 166 bits (421), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 126/218 (57%), Gaps = 6/218 (2%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
K+K+ INGFGRIGR R R D +++V +ND +++ KYDS+ G + +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDAG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+K + + K + V RNP +PW G + V+E TGVF
Sbjct: 59 VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
V+I+AP K D P +VVGVNE+ Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
HS T Q+ +D S +D R RAA NI+P+STGAAK
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAK 215
>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|A Chain A, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|B Chain B, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1RM4|O Chain O, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|A Chain A, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|B Chain B, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|2HKI|A Chain A, Crystal Structure Of Photosynthetic
Glyceraldehyde-3-Phosphate Dehydrogenase A4 Isoform
pdb|2PKQ|P Chain P, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|R Chain R, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|S Chain S, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 337
Score = 166 bits (421), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 126/218 (57%), Gaps = 6/218 (2%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
K+K+ INGFGRIGR R R D +++V +ND +++ KYDS+ G + +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+K + + K + V RNP +PW G + V+E TGVF
Sbjct: 59 VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
V+I+AP K D P +VVGVNE+ Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
HS T Q+ +D S +D R RAA NI+P+STGAAK
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAK 215
>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|R Chain R, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|P Chain P, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|Q Chain Q, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|A Chain A, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|B Chain B, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|C Chain C, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|D Chain D, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|H Chain H, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|I Chain I, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|L Chain L, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|M Chain M, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
Length = 365
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 126/218 (57%), Gaps = 6/218 (2%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
K+K+ INGFGRIGR R R D +++V +ND +++ KYDS+ G + +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+K + + K + V RNP +PW G + V+E TGVF
Sbjct: 59 VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
V+I+AP K D P +VVGVNE+ Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
HS T Q+ +D S +D R RAA NI+P+STGAAK
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAK 215
>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|A Chain A, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|B Chain B, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 126/218 (57%), Gaps = 6/218 (2%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
K+K+ INGFGRIGR R R D +++V +ND +++ KYDS+ G + +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+K + + K + V RNP +PW G + V+E TGVF
Sbjct: 59 VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
V+I+AP K D P +VVGVNE+ Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
HS T Q+ +D + +D R RAA NI+P+STGAAK
Sbjct: 179 THSYTGDQRLLDA-AHRDLRRARAACLNIVPTSTGAAK 215
>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|B Chain B, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|C Chain C, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|D Chain D, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
Length = 335
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 139/225 (61%), Gaps = 9/225 (4%)
Query: 7 IKIGINGFGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
+++ INGFGRIGR + R ++ R D+++VA+ND + ++ +YDSVHG++ E+
Sbjct: 3 VRVAINGFGRIGRNILRAIVESGRTDIQVVAIND-LGPVETNAHLLRYDSVHGRFP-KEV 60
Query: 65 KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXV 124
+V + T+ G P+ V RNP E+PW + + +E TG+FT V
Sbjct: 61 EVAGD-TIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRV 119
Query: 125 VISAPSKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
++SAP+ A + VV GVN + + ++SNASCTTNCLAP+A+V++D GI +G MTT+
Sbjct: 120 IVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTTI 179
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
HS T Q T+D KD RAA+ ++IP+STGAAK +VG V+
Sbjct: 180 HSYTGDQPTLD-TMHKDLYRARAAALSMIPTSTGAAK--AVGLVL 221
>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|B Chain B, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
Length = 335
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 127/217 (58%), Gaps = 6/217 (2%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
K+K+ INGFGRIGR R +D +++V +ND +++ KYDS+ G + ++
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-DV 58
Query: 65 KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXV 124
K + + G K + V RNP +PW G + V+E TGVF V
Sbjct: 59 KTAGDSAISVG-KVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKV 117
Query: 125 VISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
+I+AP K D P +VVGVNE+ Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 118 LITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 177
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
HS T Q+ +D S +D R RAA NI+P+STGAAK
Sbjct: 178 HSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAK 213
>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|Q Chain Q, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|T Chain T, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 368
Score = 163 bits (412), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 141/224 (62%), Gaps = 8/224 (3%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
K+K+ INGFGRIGR R R D +++V VND T++ KYDS+ G +K +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKSATHLLKYDSILGTFKA-D 58
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+K+ D +T KP+ V R+P ++PWA+ G + V+E TGVF
Sbjct: 59 VKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 118
Query: 124 VVISAPSK--DAPMFVVGVNEKEYKPEL-DIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
V+I+AP+K D P +VVGVNEK+Y ++ +I+SNASCTTNCLAP KV+ ++ GIV+G M
Sbjct: 119 VIITAPAKGSDIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTM 178
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSV 224
TT HS T Q+ +D S +D R RAA+ NI+P+STGAAK S+
Sbjct: 179 TTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSL 221
>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
pdb|3L0D|B Chain B, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
Length = 356
Score = 163 bits (412), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 135/229 (58%), Gaps = 9/229 (3%)
Query: 3 GDKKIKIGINGFGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
G +++ INGFGRIGR + R ++ R D+E+VA+ND S + ++ +YDSVHG +
Sbjct: 20 GSMSVRVAINGFGRIGRNILRAIIESGRQDIEVVALND-LGSVETNAHLLRYDSVHGCFP 78
Query: 61 HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXX 120
V D + G + VF R+P ++PW + +E TG+FT
Sbjct: 79 GTVQVVGD--AIDIGSSLIKVFAERDPAQLPWKALDIDIALECTGIFTARDKASAHLDAG 136
Query: 121 XXXVVISAPSKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
V++SAPS+ A + VV GVN + E ++SNASCTTNCLAP+A+V+H+ GI +G
Sbjct: 137 AKRVLVSAPSEGADLTVVYGVNHQFLSKEHHVISNASCTTNCLAPVAQVLHNTVGIEKGF 196
Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
MTT+HS T Q +D +D RAA+ ++IP+STGAAK +VG V+
Sbjct: 197 MTTIHSYTGDQPVLD-TMHRDLYRARAAALSMIPTSTGAAK--AVGLVL 242
>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|R Chain R, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|O Chain O, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|Q Chain Q, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|B Chain B, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|A Chain A, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
Length = 344
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 140/249 (56%), Gaps = 8/249 (3%)
Query: 3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
G +K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++
Sbjct: 7 GSMAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-G 64
Query: 63 ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
E++V D + G K V F + ++PW + V+E TG +T
Sbjct: 65 EVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAK 123
Query: 123 XVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
V+ISAP+ D V N +E +VS ASCTTN LAP+AKV++D FG+VEGLMT
Sbjct: 124 KVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMT 183
Query: 182 TVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKI 240
T+H+ T Q T D P K D R RAA+ NIIP+STGAAK ++G+VI G +
Sbjct: 184 TIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAK--AIGKVIP-EIDGKLDGGA 240
Query: 241 SIIPYLTGS 249
+P TGS
Sbjct: 241 QRVPVATGS 249
>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|R Chain R, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|O Chain O, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|Q Chain Q, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
Length = 338
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 140/249 (56%), Gaps = 8/249 (3%)
Query: 3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
G +K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++
Sbjct: 1 GSMAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-G 58
Query: 63 ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
E++V D + G K V F + ++PW + V+E TG +T
Sbjct: 59 EVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAK 117
Query: 123 XVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
V+ISAP+ D V N +E +VS ASCTTN LAP+AKV++D FG+VEGLMT
Sbjct: 118 KVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMT 177
Query: 182 TVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKI 240
T+H+ T Q T D P K D R RAA+ NIIP+STGAAK ++G+VI G +
Sbjct: 178 TIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAK--AIGKVIP-EIDGKLDGGA 234
Query: 241 SIIPYLTGS 249
+P TGS
Sbjct: 235 QRVPVATGS 243
>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|R Chain R, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|Q Chain Q, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|P Chain P, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
Length = 339
Score = 160 bits (406), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 139/245 (56%), Gaps = 8/245 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 6 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 63
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D + G K V F + ++PW + V+E TG +T V+I
Sbjct: 64 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 122
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
SAP+ D V N +E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 123 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 182
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKISIIP 244
T Q T D P K D R RAA+ NIIP+STGAAK ++G+VI G + +P
Sbjct: 183 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAK--AIGKVIP-EIDGKLDGGAQRVP 239
Query: 245 YLTGS 249
TGS
Sbjct: 240 VATGS 244
>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|O Chain O, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|P Chain P, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|R Chain R, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3L6O|Q Chain Q, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|P Chain P, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|R Chain R, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|O Chain O, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3LC2|O Chain O, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|Q Chain Q, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|R Chain R, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|P Chain P, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
Length = 336
Score = 160 bits (405), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 139/245 (56%), Gaps = 8/245 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D + G K V F + ++PW + V+E TG +T V+I
Sbjct: 61 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
SAP+ D V N +E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKISIIP 244
T Q T D P K D R RAA+ NIIP+STGAAK ++G+VI G + +P
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAK--AIGKVIP-EIDGKLDGGAQRVP 236
Query: 245 YLTGS 249
TGS
Sbjct: 237 VATGS 241
>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|R Chain R, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|O Chain O, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|Q Chain Q, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution
Length = 336
Score = 157 bits (398), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 139/245 (56%), Gaps = 8/245 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D + G K V F + ++PW + V+E TG +T V+I
Sbjct: 61 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
SAP+ D V N +E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+++
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTINA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKISIIP 244
T Q T D P K D R RAA+ NIIP+STGAAK ++G+VI G + +P
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAK--AIGKVIP-EIDGKLDGGAQRVP 236
Query: 245 YLTGS 249
TGS
Sbjct: 237 VATGS 241
>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|B Chain B, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|O Chain O, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|P Chain P, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|Q Chain Q, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|R Chain R, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2DUU|A Chain A, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|B Chain B, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|O Chain O, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|P Chain P, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|Q Chain Q, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|R Chain R, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp
Length = 380
Score = 156 bits (395), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 136/221 (61%), Gaps = 13/221 (5%)
Query: 7 IKIGINGFGRIGRLVARV--ALQRDDVELVAVNDPFISTDYMT--YMFKYDSVHGQWKHN 62
I++ INGFGRIGR R Q D+E+VA+N+ ++D T ++ +YDSV G++ N
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN---TSDARTAAHLLEYDSVLGRF--N 57
Query: 63 ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
DE ++ K + + RNP +PW + + V+ESTGVF
Sbjct: 58 ADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAK 117
Query: 123 XVVISAPSKDAPM--FVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
V+I+AP K + +V+GVN+ EY+ E ++SNASCTTNCLAP+AKV+HD FGI++G
Sbjct: 118 KVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGT 177
Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
MTT HS T Q+ +D S +D R RAA+ NI+P++TGAAK
Sbjct: 178 MTTTHSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAK 217
>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese
pdb|3B1J|B Chain B, Crystal Structure Of Dehydrogenese
pdb|3B1K|A Chain A, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|B Chain B, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|G Chain G, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|H Chain H, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B20|A Chain A, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|B Chain B, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|O Chain O, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|P Chain P, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|Q Chain Q, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|R Chain R, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
Length = 339
Score = 156 bits (395), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 136/221 (61%), Gaps = 13/221 (5%)
Query: 7 IKIGINGFGRIGRLVARV--ALQRDDVELVAVNDPFISTDYMT--YMFKYDSVHGQWKHN 62
I++ INGFGRIGR R Q D+E+VA+N+ ++D T ++ +YDSV G++ N
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN---TSDARTAAHLLEYDSVLGRF--N 57
Query: 63 ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
DE ++ K + + RNP +PW + + V+ESTGVF
Sbjct: 58 ADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAK 117
Query: 123 XVVISAPSKDAPM--FVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
V+I+AP K + +V+GVN+ EY+ E ++SNASCTTNCLAP+AKV+HD FGI++G
Sbjct: 118 KVLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGT 177
Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
MTT HS T Q+ +D S +D R RAA+ NI+P++TGAAK
Sbjct: 178 MTTTHSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAK 217
>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3KV3|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
Length = 336
Score = 156 bits (395), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 138/245 (56%), Gaps = 8/245 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D + G K V F + ++PW + V+E TG +T V+I
Sbjct: 61 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
SAP+ D V N +E +VS AS TTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKISIIP 244
T Q T D P K D R RAA+ NIIP+STGAAK ++G+VI G + +P
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAK--AIGKVIP-EIDGKLDGGAQRVP 236
Query: 245 YLTGS 249
TGS
Sbjct: 237 VATGS 241
>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 156 bits (395), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 91/209 (43%), Positives = 124/209 (59%), Gaps = 7/209 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R+ +R VE+ +ND + ++ KYDS +G++
Sbjct: 1 MKVGINGFGRIGRQVFRILHERG-VEVALIND-LTDNKTLAHLLKYDSTYGRFPG--AVG 56
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
DE+ L K + ++P EIPW + G VVESTGVFT V+I
Sbjct: 57 YDEENLYVDGKAIRATAIKDPREIPWKQAGVGVVVESTGVFTDGEKARAHLEAGAKKVII 116
Query: 127 SAPSKDAPMFVV-GVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
+AP+K+ + VV GVN ++Y P + I+SNASCTTN LAP+ KV+ FG+ + LMTTVH
Sbjct: 117 TAPAKNEDITVVLGVNHEQYDPAKHHILSNASCTTNSLAPVMKVLEKAFGVEKALMTTVH 176
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIP 213
S T Q+ +D P KD R RAA+ NIIP
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAALNIIP 204
>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|O Chain O, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|P Chain P, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|R Chain R, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3L4S|Q Chain Q, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|P Chain P, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|O Chain O, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|R Chain R, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
Length = 336
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 138/245 (56%), Gaps = 8/245 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D + G K V F + ++PW + V+E TG +T V+I
Sbjct: 61 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
SAP+ D V N +E +VS AS TTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASGTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKISIIP 244
T Q T D P K D R RAA+ NIIP+STGAAK ++G+VI G + +P
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAK--AIGKVIP-EIDGKLDGGAQRVP 236
Query: 245 YLTGS 249
TGS
Sbjct: 237 VATGS 241
>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSZ|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
Length = 336
Score = 153 bits (387), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 138/245 (56%), Gaps = 8/245 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D + G K V F + ++PW + V+E TG +T V+I
Sbjct: 61 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
SAP+ D V N +E +VS AS TTN LAP+AKV++D FG+VEGLMTT+++
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTINA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKISIIP 244
T Q T D P K D R RAA+ NIIP+STGAAK ++G+VI G + +P
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAK--AIGKVIP-EIDGKLDGGAQRVP 236
Query: 245 YLTGS 249
TGS
Sbjct: 237 VATGS 241
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 153 bits (387), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 125/209 (59%), Gaps = 7/209 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R+ L VE+ +ND + ++ KYDS++ ++ E+
Sbjct: 1 MKVGINGFGRIGRQVFRI-LHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFP-GEVAY 57
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D+ + G K + ++P+EIPWA+ G V+ESTGVFT V+I
Sbjct: 58 DDQYLYVDG-KAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
+AP+K + V+GVN + Y P I+SNASCTTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVH 176
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIP 213
S T Q+ +D P KD R RAA+ NIIP
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIP 204
>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|B Chain B, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|C Chain C, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|D Chain D, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|E Chain E, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|F Chain F, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|G Chain G, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|H Chain H, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|O Chain O, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|Q Chain Q, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3QV1|A Chain A, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|B Chain B, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|C Chain C, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|D Chain D, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|E Chain E, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|F Chain F, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3RVD|A Chain A, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|B Chain B, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|C Chain C, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|D Chain D, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|E Chain E, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|F Chain F, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|G Chain G, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|H Chain H, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|O Chain O, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|Q Chain Q, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana
Length = 337
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 127/218 (58%), Gaps = 6/218 (2%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
K+K+ INGFGRIGR R R D ++++A+ND +++ KYDS G + +
Sbjct: 2 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTG-GVKQASHLLKYDSTLGIFDA-D 59
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+K E + K + V RNP +PW + G + V+E TGVF
Sbjct: 60 VKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKK 119
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
V+I+AP K D P +VVGVN Y + I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 120 VIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 179
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 220
HS T Q+ +D S +D R RAA+ NI+P+STGAAK
Sbjct: 180 THSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAK 216
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
Length = 331
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 124/209 (59%), Gaps = 7/209 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R+ L VE+ +ND + ++ KYDS++ ++ E+
Sbjct: 1 MKVGINGFGRIGRQVFRI-LHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFP-GEVAY 57
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D+ + G K + ++P+EIPWA+ G V+ESTGVFT V+I
Sbjct: 58 DDQYLYVDG-KAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
+AP+K + V+GVN + Y P I+SNAS TTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASXTTNSLAPVMKVLEEAFGVEKALMTTVH 176
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIP 213
S T Q+ +D P KD R RAA+ NIIP
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIP 204
>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|E Chain E, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|F Chain F, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|G Chain G, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|H Chain H, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
Length = 344
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 130/227 (57%), Gaps = 11/227 (4%)
Query: 7 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
I++ ING+GRIGR R + + D+E+VA+ND ++ +YD+ HG++ E
Sbjct: 11 IRVAINGYGRIGRNTLRAFYENGKKHDLEIVAIND-LGDAKTNAHLTQYDTAHGKFP-GE 68
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+ V + ++ G++ + V RNP E+PW + G + V+E TG FT
Sbjct: 69 VSVDGDYLVVNGDR-IRVLANRNPAELPWGELGVDVVMECTGFFTSKEKASAHLKGGAKK 127
Query: 124 VVISAPS-KDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
V+ISAP KD +V GVN K E ++SNASCTTNCLAPL K ++DK G+ GLMT
Sbjct: 128 VIISAPGGKDVDATIVYGVNHDVLKAEHTVISNASCTTNCLAPLVKPLNDKIGLETGLMT 187
Query: 182 TVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
T+H+ T Q D +D R R+A+ + IP+ TGAA +VG V+
Sbjct: 188 TIHAYTNDQVLTD-VYHEDLRRARSATHSQIPTKTGAAA--AVGLVL 231
>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution.
pdb|1OBF|P Chain P, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution
Length = 335
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 125/227 (55%), Gaps = 11/227 (4%)
Query: 7 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
I++ ING+GRIGR + R + D+E+VA+ND ++ +YD+ HG++
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND-LGDPKTNAHLTRYDTAHGKFP-GT 59
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+ V ++ G+K + V RNP ++PW + V+E TG FT
Sbjct: 60 VSVNGSYMVVNGDK-IRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK 118
Query: 124 VVISAPS-KDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
V+ISAP D VV GVN K ++SNAS TTNCLAPL K ++DK G+ +GLMT
Sbjct: 119 VIISAPGGADVDATVVYGVNHGTLKSTDTVISNASXTTNCLAPLVKPLNDKLGLQDGLMT 178
Query: 182 TVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TVH+ T Q D +D R R+A+ ++IP+ TGAA +VG V+
Sbjct: 179 TVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTKTGAAA--AVGDVL 222
>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|B Chain B, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|C Chain C, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|D Chain D, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|E Chain E, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|F Chain F, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|G Chain G, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|H Chain H, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|I Chain I, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|J Chain J, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|K Chain K, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|L Chain L, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|M Chain M, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|N Chain N, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|O Chain O, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|P Chain P, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
Length = 338
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 121/219 (55%), Gaps = 11/219 (5%)
Query: 7 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
+++ INGFGRIGR V R + R ++ +VA+N+ M ++ KYD+ HG++
Sbjct: 2 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 57
Query: 64 LKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
+V+ E+ LF G+ + V R+ + +PW + G + V++ TGV+
Sbjct: 58 WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 117
Query: 123 XVVISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
V+ S P S D VV GVN+ + + E IVSNASCTTNC+ P+ K++ D +GI G +
Sbjct: 118 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTV 177
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 219
TT+HS Q+ +D D R RAAS +IIP T A
Sbjct: 178 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLA 215
>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|P Chain P, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|Q Chain Q, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|R Chain R, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 121/219 (55%), Gaps = 11/219 (5%)
Query: 7 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
+++ INGFGRIGR V R + R ++ +VA+N+ M ++ KYD+ HG++
Sbjct: 3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 58
Query: 64 LKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
+V+ E+ LF G+ + V R+ + +PW + G + V++ TGV+
Sbjct: 59 WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 118
Query: 123 XVVISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
V+ S P S D VV GVN+ + + E IVSNASCTTNC+ P+ K++ D +GI G +
Sbjct: 119 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTV 178
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 219
TT+HS Q+ +D D R RAAS +IIP T A
Sbjct: 179 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLA 216
>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|P Chain P, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|Q Chain Q, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|R Chain R, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 119/219 (54%), Gaps = 11/219 (5%)
Query: 7 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
+++ INGFGRIGR V R + R ++ +VA+N+ M ++ KYD+ HG++
Sbjct: 3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 58
Query: 64 LKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
+V+ E+ LF G+ + V R+ + +PW + G + V++ TGV+
Sbjct: 59 WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 118
Query: 123 XVVISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
V+ S P S D VV GVN+ + + E IVSNAS TTN + P+ K++ D +GI G +
Sbjct: 119 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASATTNSIIPVIKLLDDAYGIESGTV 178
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 219
TT+HS Q+ +D D R RAAS +IIP T A
Sbjct: 179 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLA 216
>pdb|2CZC|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CZC|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CZC|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CZC|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 334
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAV 36
K+K+G+NG+G IG+ VA ++DD+EL+ +
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGI 32
>pdb|3TZ6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Inhibitor Smcs (Cys) And Phosphate From
Mycobacterium Tuberculosis H37rv
Length = 344
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 132 DAPMFVVGVN---EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA 188
D P+ V VN + +P+ I++N +CTT P+ KV+HD+ +V ++++ +++
Sbjct: 102 DVPLVVSEVNFERDAHRRPK-GIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSG 160
Query: 189 T 189
+
Sbjct: 161 S 161
>pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Glycerol And Sulfate From Mycobacterium
Tuberculosis H37rv
Length = 362
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 132 DAPMFVVGVN---EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA 188
D P+ V VN + +P+ I++N +CTT P+ KV+HD+ +V ++++ +++
Sbjct: 120 DVPLVVSEVNFERDAHRRPK-GIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSG 178
Query: 189 T 189
+
Sbjct: 179 S 179
>pdb|1CF2|P Chain P, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|R Chain R, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|O Chain O, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|Q Chain Q, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
Length = 337
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVN 37
+ ING+G +G+ VA Q+DD++++ V+
Sbjct: 4 VAINGYGTVGKRVADAIAQQDDMKVIGVS 32
>pdb|2YYY|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
pdb|2YYY|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
Length = 343
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAV 36
K+ ING+G IG+ VA +DD+E++ V
Sbjct: 4 KVLINGYGSIGKRVADAVSMQDDMEVIGV 32
>pdb|3EUW|A Chain A, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|B Chain B, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|C Chain C, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|D Chain D, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
Length = 344
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI 41
++I + G GRIG + A D+ELV + DPFI
Sbjct: 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFI 39
>pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
pdb|1YS4|B Chain B, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
Length = 354
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 151 IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
I++N +C+T C K I DKFG+ + T +++
Sbjct: 151 IITNPNCSTICAVITLKPIXDKFGLEAVFIATXQAVS 187
>pdb|3SDS|A Chain A, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|B Chain B, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|C Chain C, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
Length = 353
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 134 PMFV------VGVNEKEYKPELDIVSNASCTTNCLAPLAKVI----HDKFGIVEGLMTTV 183
PMF+ +GVNE Y + I S SC + P + + H ++ L T
Sbjct: 95 PMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVGPHSDIANLAKHSSVPVINALCDTF 154
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG 217
H + Q D ++ + ++A+ PSS G
Sbjct: 155 HPL---QAIADFLTIHESFASQSATHGTHPSSLG 185
>pdb|1B7G|O Chain O, Glyceraldehyde 3-phosphate Dehydrogenase
pdb|1B7G|Q Chain Q, Glyceraldehyde 3-phosphate Dehydrogenase
Length = 340
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36
+ + +NG+G IG+ VA +++ D++LV V
Sbjct: 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGV 31
>pdb|2IXA|A Chain A, A-Zyme, N-Acetylgalactosaminidase
pdb|2IXB|A Chain A, Crystal Structure Of N-Acetylgalactosaminidase In
Complex With Galnac
Length = 444
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
KK++I G G+ +RDDVE+VA DP
Sbjct: 19 KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADP 53
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii
From Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii
From Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 27 QRDDVELVAVNDP-FISTDY--MTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83
+R ++E + +NDP F DY +T +Y E+ VK T++ K + +G
Sbjct: 32 RRREIENLILNDPDFQHEDYNFLTRSQRY----------EVAVKKSATMV---KKMREYG 78
Query: 84 FRNPEEIPWAK 94
+PEEI W K
Sbjct: 79 ISDPEEIMWFK 89
>pdb|2QZ9|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2R00|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
pdb|2R00|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 132 DAPMFVVGVNEK---EYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA 188
D P+ V VN + E++ +I++N +C+T + K I+D GI +TT S++
Sbjct: 104 DIPLVVPEVNPEAIAEFRNR-NIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSG 162
Query: 189 TQKTVDGPSMKDWRGGRAASFNIIPSST 216
K + + G A N P+ T
Sbjct: 163 AGKA----GIDELAGQTAKLLNGYPAET 186
>pdb|1DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
pdb|1DAP|B Chain B, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
pdb|3DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
And The Inhibitor 5s-Isoxazoline
pdb|3DAP|B Chain B, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
And The Inhibitor 5s-Isoxazoline
pdb|1F06|A Chain A, Three Dimensional Structure Of The Ternary Complex Of
Corynebacterium Glutamicum Diaminopimelate
Dehydrogenase Nadph-l-2-amino-6-methylene- Pimelate
pdb|1F06|B Chain B, Three Dimensional Structure Of The Ternary Complex Of
Corynebacterium Glutamicum Diaminopimelate
Dehydrogenase Nadph-l-2-amino-6-methylene- Pimelate
pdb|2DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Dap
Length = 320
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMF 50
I++ I G+G +GR V ++ ++ D++LV + + D T +F
Sbjct: 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVF 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,978,042
Number of Sequences: 62578
Number of extensions: 261372
Number of successful extensions: 879
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 90
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)