Query 025639
Match_columns 250
No_of_seqs 147 out of 1357
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:55:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00434 cytosolic glyceraldeh 100.0 2.7E-83 5.9E-88 585.7 22.3 241 5-250 2-258 (361)
2 PRK15425 gapA glyceraldehyde-3 100.0 1E-79 2.2E-84 560.7 24.8 238 5-249 1-239 (331)
3 PTZ00023 glyceraldehyde-3-phos 100.0 1.8E-79 3.8E-84 560.4 24.6 240 5-249 1-243 (337)
4 PLN02237 glyceraldehyde-3-phos 100.0 1.1E-78 2.3E-83 567.1 24.1 239 5-250 74-318 (442)
5 PLN02272 glyceraldehyde-3-phos 100.0 9.9E-78 2.2E-82 559.6 25.7 238 7-249 86-324 (421)
6 PRK07403 glyceraldehyde-3-phos 100.0 8.3E-78 1.8E-82 548.9 24.0 236 7-249 2-242 (337)
7 PLN03096 glyceraldehyde-3-phos 100.0 3.1E-77 6.7E-82 553.6 24.4 238 5-249 59-300 (395)
8 PLN02358 glyceraldehyde-3-phos 100.0 1.4E-76 3.1E-81 542.5 25.7 244 1-249 1-245 (338)
9 COG0057 GapA Glyceraldehyde-3- 100.0 1.2E-76 2.6E-81 533.5 23.4 236 7-249 2-240 (335)
10 PRK07729 glyceraldehyde-3-phos 100.0 1.8E-76 3.9E-81 540.8 24.3 238 5-249 1-240 (343)
11 PTZ00353 glycosomal glyceralde 100.0 3.1E-76 6.7E-81 539.1 24.2 240 5-249 1-243 (342)
12 TIGR01534 GAPDH-I glyceraldehy 100.0 6.9E-76 1.5E-80 535.9 23.5 236 8-249 1-240 (327)
13 PRK08955 glyceraldehyde-3-phos 100.0 5.7E-75 1.2E-79 531.2 24.5 237 5-249 1-240 (334)
14 PRK13535 erythrose 4-phosphate 100.0 1.7E-74 3.6E-79 528.2 23.2 236 7-249 2-242 (336)
15 PRK08289 glyceraldehyde-3-phos 100.0 9.8E-74 2.1E-78 535.1 22.6 237 6-249 127-377 (477)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 4.9E-71 1.1E-75 504.5 23.5 235 8-249 1-240 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 1.1E-60 2.4E-65 417.7 6.2 221 17-246 1-221 (285)
18 PF00044 Gp_dh_N: Glyceraldehy 100.0 3.8E-49 8.3E-54 324.4 12.9 149 7-157 1-151 (151)
19 TIGR01546 GAPDH-II_archae glyc 100.0 8.6E-48 1.9E-52 351.5 18.5 208 9-249 1-217 (333)
20 smart00846 Gp_dh_N Glyceraldeh 100.0 5.8E-44 1.3E-48 293.4 17.0 148 7-157 1-149 (149)
21 PRK04207 glyceraldehyde-3-phos 100.0 9.8E-43 2.1E-47 320.8 19.0 208 7-249 2-220 (341)
22 PRK06901 aspartate-semialdehyd 100.0 1.2E-42 2.7E-47 314.2 16.5 205 6-248 3-228 (322)
23 COG0136 Asd Aspartate-semialde 100.0 9.7E-41 2.1E-45 302.6 15.2 210 7-248 2-243 (334)
24 TIGR01745 asd_gamma aspartate- 100.0 6.4E-40 1.4E-44 302.4 13.4 213 7-248 1-272 (366)
25 PRK06728 aspartate-semialdehyd 100.0 5.8E-37 1.3E-41 281.8 16.1 212 6-248 5-251 (347)
26 PRK14874 aspartate-semialdehyd 100.0 8.3E-37 1.8E-41 280.7 16.6 208 7-250 2-245 (334)
27 PRK06598 aspartate-semialdehyd 100.0 2.2E-36 4.8E-41 279.6 14.6 215 6-248 1-274 (369)
28 TIGR01296 asd_B aspartate-semi 100.0 5.9E-36 1.3E-40 275.6 14.3 206 8-249 1-247 (339)
29 PRK08040 putative semialdehyde 100.0 1.5E-31 3.3E-36 245.5 18.5 210 6-249 4-243 (336)
30 PRK05671 aspartate-semialdehyd 100.0 5.7E-30 1.2E-34 235.4 18.3 209 7-249 5-244 (336)
31 PLN02383 aspartate semialdehyd 100.0 2.9E-29 6.3E-34 231.4 15.9 211 5-249 6-252 (344)
32 PRK08664 aspartate-semialdehyd 100.0 1E-27 2.2E-32 221.7 15.8 215 5-249 2-242 (349)
33 TIGR00978 asd_EA aspartate-sem 99.9 3.3E-27 7.2E-32 217.6 16.2 214 7-249 1-239 (341)
34 KOG4777 Aspartate-semialdehyde 99.9 3.5E-27 7.6E-32 205.7 5.9 212 8-248 5-249 (361)
35 PRK00436 argC N-acetyl-gamma-g 99.9 3.7E-24 8.1E-29 197.6 16.3 208 5-248 1-238 (343)
36 PF02800 Gp_dh_C: Glyceraldehy 99.9 3.7E-25 8.1E-30 183.3 5.8 84 162-249 1-84 (157)
37 TIGR01850 argC N-acetyl-gamma- 99.9 4.4E-23 9.6E-28 190.6 14.5 207 7-248 1-241 (346)
38 PLN02968 Probable N-acetyl-gam 99.9 2.4E-22 5.2E-27 187.8 14.3 212 5-248 37-276 (381)
39 PRK11863 N-acetyl-gamma-glutam 99.8 2.7E-20 5.9E-25 169.5 14.4 191 5-248 1-207 (313)
40 TIGR01851 argC_other N-acetyl- 99.7 5.5E-17 1.2E-21 147.3 12.8 137 7-188 2-146 (310)
41 PRK08300 acetaldehyde dehydrog 99.7 5.9E-17 1.3E-21 146.7 10.5 154 6-187 4-160 (302)
42 TIGR03215 ac_ald_DH_ac acetald 99.5 5.7E-14 1.2E-18 126.7 11.9 151 7-188 2-155 (285)
43 PF01118 Semialdhyde_dh: Semia 99.3 1.7E-12 3.8E-17 102.6 4.8 113 8-146 1-119 (121)
44 COG0002 ArgC Acetylglutamate s 99.0 4.7E-09 1E-13 96.3 14.1 142 5-172 1-167 (349)
45 PF02774 Semialdhyde_dhC: Semi 98.6 3.6E-08 7.7E-13 83.6 4.6 81 166-248 1-106 (184)
46 smart00859 Semialdhyde_dh Semi 98.6 1.4E-07 3.1E-12 74.1 6.6 111 8-145 1-120 (122)
47 PRK13301 putative L-aspartate 98.2 5.7E-06 1.2E-10 74.0 7.3 145 5-186 1-149 (267)
48 PRK13303 L-aspartate dehydroge 98.1 1.2E-05 2.5E-10 72.0 8.1 147 7-187 2-149 (265)
49 TIGR01921 DAP-DH diaminopimela 97.9 2E-05 4.3E-10 72.5 6.2 88 6-127 3-90 (324)
50 TIGR00036 dapB dihydrodipicoli 97.8 4.7E-05 1E-09 68.2 6.2 95 7-126 2-97 (266)
51 PRK06270 homoserine dehydrogen 97.8 0.00013 2.8E-09 67.6 8.9 35 5-39 1-44 (341)
52 PF01113 DapB_N: Dihydrodipico 97.7 7.5E-06 1.6E-10 65.0 0.3 91 7-121 1-92 (124)
53 COG1712 Predicted dinucleotide 97.7 0.00014 3E-09 63.6 7.6 143 7-188 1-149 (255)
54 COG0289 DapB Dihydrodipicolina 97.6 0.00029 6.2E-09 62.9 9.0 101 5-130 1-103 (266)
55 PRK13302 putative L-aspartate 97.6 0.00019 4.2E-09 64.4 8.0 90 6-126 6-96 (271)
56 PRK06349 homoserine dehydrogen 97.5 0.00015 3.2E-09 69.2 5.6 93 6-129 3-105 (426)
57 PF01408 GFO_IDH_MocA: Oxidore 97.5 0.00037 8.1E-09 53.8 6.5 94 7-130 1-95 (120)
58 PRK00048 dihydrodipicolinate r 97.5 0.00026 5.7E-09 63.0 6.4 87 7-126 2-89 (257)
59 PRK13304 L-aspartate dehydroge 97.5 0.00033 7.2E-09 62.6 7.0 89 7-127 2-91 (265)
60 PRK08374 homoserine dehydrogen 97.4 0.00014 3.1E-09 67.3 4.5 108 5-128 1-121 (336)
61 PRK06813 homoserine dehydrogen 97.3 0.00039 8.4E-09 64.7 5.7 35 5-39 1-44 (346)
62 PRK06392 homoserine dehydrogen 97.3 0.00081 1.8E-08 62.1 7.7 33 7-39 1-40 (326)
63 PRK05447 1-deoxy-D-xylulose 5- 97.2 0.0013 2.9E-08 61.9 8.5 112 7-128 2-122 (385)
64 PLN02775 Probable dihydrodipic 97.2 0.0012 2.5E-08 59.9 7.0 95 5-124 10-108 (286)
65 PRK11579 putative oxidoreducta 97.1 0.0025 5.4E-08 58.8 9.2 93 6-130 4-97 (346)
66 PF03447 NAD_binding_3: Homose 97.0 0.00018 3.9E-09 56.0 0.3 85 13-128 1-89 (117)
67 KOG4354 N-acetyl-gamma-glutamy 96.9 0.0023 4.9E-08 56.8 6.1 175 6-215 19-206 (340)
68 COG0460 ThrA Homoserine dehydr 96.7 0.0049 1.1E-07 57.0 7.4 35 5-39 2-45 (333)
69 COG0673 MviM Predicted dehydro 96.7 0.0065 1.4E-07 55.2 7.7 97 5-130 2-100 (342)
70 COG4569 MhpF Acetaldehyde dehy 96.7 0.0069 1.5E-07 52.5 7.2 72 96-172 71-145 (310)
71 PLN02696 1-deoxy-D-xylulose-5- 96.6 0.007 1.5E-07 58.1 7.9 112 7-128 58-180 (454)
72 PRK09414 glutamate dehydrogena 96.5 0.012 2.5E-07 56.7 8.6 99 7-126 233-341 (445)
73 PRK07819 3-hydroxybutyryl-CoA 96.4 0.028 6E-07 50.8 10.1 154 1-175 1-180 (286)
74 TIGR02130 dapB_plant dihydrodi 96.3 0.0076 1.6E-07 54.4 5.7 89 7-123 1-96 (275)
75 COG1748 LYS9 Saccharopine dehy 96.2 0.038 8.2E-07 52.3 10.0 98 7-129 2-99 (389)
76 cd01076 NAD_bind_1_Glu_DH NAD( 96.2 0.088 1.9E-06 46.2 11.7 129 6-166 31-168 (227)
77 cd05211 NAD_bind_Glu_Leu_Phe_V 96.1 0.089 1.9E-06 45.8 10.9 33 6-39 23-55 (217)
78 PRK10206 putative oxidoreducta 96.0 0.026 5.6E-07 52.2 7.6 94 7-130 2-97 (344)
79 PLN02700 homoserine dehydrogen 95.7 0.023 4.9E-07 53.6 6.1 34 6-39 3-44 (377)
80 cd05313 NAD_bind_2_Glu_DH NAD( 95.7 0.075 1.6E-06 47.5 8.9 104 7-127 39-152 (254)
81 CHL00194 ycf39 Ycf39; Provisio 95.5 0.047 1E-06 49.4 7.4 32 7-39 1-33 (317)
82 PLN02819 lysine-ketoglutarate 95.4 0.037 8.1E-07 58.3 7.1 97 7-129 570-679 (1042)
83 PRK09436 thrA bifunctional asp 95.4 0.015 3.3E-07 59.9 4.0 35 5-39 464-506 (819)
84 COG4091 Predicted homoserine d 95.3 0.072 1.6E-06 49.7 7.8 114 6-129 17-134 (438)
85 PRK08229 2-dehydropantoate 2-r 95.3 0.19 4.1E-06 46.0 10.6 33 5-38 1-33 (341)
86 PF13460 NAD_binding_10: NADH( 95.2 0.027 5.8E-07 46.3 4.3 30 9-39 1-31 (183)
87 KOG1502 Flavonol reductase/cin 95.2 0.13 2.7E-06 47.6 8.9 85 1-106 1-88 (327)
88 PLN02477 glutamate dehydrogena 95.2 0.26 5.7E-06 47.0 11.3 32 7-39 207-238 (410)
89 PF05368 NmrA: NmrA-like famil 95.0 0.055 1.2E-06 46.5 5.9 95 9-128 1-102 (233)
90 PF02826 2-Hacid_dh_C: D-isome 95.0 0.037 7.9E-07 46.4 4.6 32 7-39 37-68 (178)
91 COG2910 Putative NADH-flavin r 94.9 0.14 3E-06 43.9 7.8 32 7-39 1-33 (211)
92 PF02670 DXP_reductoisom: 1-de 94.7 0.074 1.6E-06 42.7 5.4 109 9-127 1-120 (129)
93 PRK09466 metL bifunctional asp 94.6 0.029 6.4E-07 57.8 3.6 35 5-39 457-500 (810)
94 PRK05472 redox-sensing transcr 94.6 0.1 2.2E-06 45.0 6.5 94 7-129 85-179 (213)
95 COG0569 TrkA K+ transport syst 94.6 0.12 2.6E-06 45.1 6.9 99 7-131 1-103 (225)
96 PTZ00079 NADP-specific glutama 94.5 0.25 5.4E-06 47.7 9.4 103 7-126 238-350 (454)
97 PF03435 Saccharop_dh: Sacchar 94.3 0.072 1.6E-06 49.7 5.2 96 9-128 1-97 (386)
98 PLN00016 RNA-binding protein; 94.1 0.14 3.1E-06 47.5 6.8 34 5-39 51-89 (378)
99 cd01075 NAD_bind_Leu_Phe_Val_D 93.9 0.36 7.9E-06 41.3 8.4 31 7-39 29-59 (200)
100 PRK14030 glutamate dehydrogena 93.9 0.54 1.2E-05 45.3 10.3 104 7-126 229-341 (445)
101 PRK14031 glutamate dehydrogena 93.8 0.31 6.7E-06 47.0 8.5 102 7-126 229-340 (444)
102 TIGR03649 ergot_EASG ergot alk 93.6 0.28 6.1E-06 43.3 7.5 31 8-39 1-32 (285)
103 KOG2741 Dimeric dihydrodiol de 93.6 0.11 2.3E-06 48.3 4.6 103 1-130 1-105 (351)
104 PRK08268 3-hydroxy-acyl-CoA de 93.5 0.17 3.6E-06 49.6 6.3 38 7-48 8-45 (507)
105 COG2344 AT-rich DNA-binding pr 93.4 0.29 6.3E-06 42.0 6.6 90 6-124 84-174 (211)
106 TIGR00243 Dxr 1-deoxy-D-xylulo 93.3 0.16 3.4E-06 48.0 5.5 112 7-128 2-124 (389)
107 PF03446 NAD_binding_2: NAD bi 93.2 0.14 3E-06 42.1 4.5 30 7-37 2-31 (163)
108 PRK06223 malate dehydrogenase; 93.1 0.53 1.1E-05 42.6 8.5 31 7-37 3-33 (307)
109 PRK08410 2-hydroxyacid dehydro 93.1 0.12 2.7E-06 47.2 4.4 30 7-37 146-175 (311)
110 PRK05808 3-hydroxybutyryl-CoA 93.0 0.68 1.5E-05 41.3 9.0 30 7-37 4-33 (282)
111 PRK07530 3-hydroxybutyryl-CoA 93.0 0.14 3.1E-06 45.9 4.6 38 7-48 5-42 (292)
112 PF13380 CoA_binding_2: CoA bi 92.9 0.41 8.9E-06 37.4 6.5 83 8-129 2-88 (116)
113 PTZ00117 malate dehydrogenase; 92.9 0.56 1.2E-05 43.1 8.4 26 7-32 6-31 (319)
114 PRK11199 tyrA bifunctional cho 92.9 0.47 1E-05 44.5 8.1 31 6-37 98-129 (374)
115 PRK06487 glycerate dehydrogena 92.9 0.15 3.3E-06 46.8 4.6 31 7-38 149-179 (317)
116 TIGR01761 thiaz-red thiazoliny 92.8 0.49 1.1E-05 44.1 7.9 94 6-130 3-99 (343)
117 PF10727 Rossmann-like: Rossma 92.7 0.083 1.8E-06 42.3 2.4 33 6-39 10-42 (127)
118 COG2085 Predicted dinucleotide 92.7 0.55 1.2E-05 40.8 7.5 92 7-130 2-94 (211)
119 PF00056 Ldh_1_N: lactate/mala 92.5 0.26 5.7E-06 39.8 5.1 78 7-107 1-80 (141)
120 TIGR03736 PRTRC_ThiF PRTRC sys 92.4 0.36 7.8E-06 42.9 6.2 105 6-117 11-127 (244)
121 PRK06932 glycerate dehydrogena 92.3 0.18 4E-06 46.2 4.4 30 7-37 148-177 (314)
122 PRK08507 prephenate dehydrogen 92.2 0.65 1.4E-05 41.4 7.8 31 7-37 1-32 (275)
123 PRK11559 garR tartronate semia 92.2 0.19 4.2E-06 45.0 4.4 32 5-37 1-32 (296)
124 COG0111 SerA Phosphoglycerate 92.2 0.19 4.2E-06 46.4 4.4 31 7-38 143-173 (324)
125 COG1063 Tdh Threonine dehydrog 91.9 0.48 1E-05 43.9 6.7 101 8-130 171-272 (350)
126 PLN02928 oxidoreductase family 91.8 0.22 4.8E-06 46.3 4.4 31 7-38 160-190 (347)
127 COG0287 TyrA Prephenate dehydr 91.8 0.68 1.5E-05 41.9 7.4 33 5-37 2-35 (279)
128 PRK07574 formate dehydrogenase 91.8 0.22 4.8E-06 47.1 4.4 31 7-38 193-223 (385)
129 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.7 0.2 4.3E-06 49.0 4.2 37 7-47 6-42 (503)
130 COG0743 Dxr 1-deoxy-D-xylulose 91.7 0.34 7.3E-06 45.4 5.3 42 7-49 2-45 (385)
131 PRK06436 glycerate dehydrogena 91.6 0.25 5.4E-06 45.2 4.4 31 7-38 123-153 (303)
132 COG0039 Mdh Malate/lactate deh 91.5 0.31 6.8E-06 44.8 4.9 23 7-29 1-23 (313)
133 COG3804 Uncharacterized conser 91.4 0.27 5.8E-06 44.7 4.3 35 5-39 1-35 (350)
134 TIGR01915 npdG NADPH-dependent 91.4 0.58 1.3E-05 40.3 6.3 30 7-37 1-31 (219)
135 PRK12464 1-deoxy-D-xylulose 5- 91.4 0.35 7.6E-06 45.6 5.2 107 11-128 1-117 (383)
136 COG1052 LdhA Lactate dehydroge 91.3 0.27 5.9E-06 45.4 4.4 32 7-39 147-178 (324)
137 cd08230 glucose_DH Glucose deh 91.3 2.9 6.2E-05 38.2 11.1 30 8-38 175-204 (355)
138 PRK13243 glyoxylate reductase; 91.2 0.28 6E-06 45.4 4.4 31 7-38 151-181 (333)
139 PRK15409 bifunctional glyoxyla 91.2 0.29 6.2E-06 45.1 4.4 30 7-37 146-176 (323)
140 PF03807 F420_oxidored: NADP o 91.2 0.54 1.2E-05 34.6 5.2 41 8-50 1-43 (96)
141 PRK11790 D-3-phosphoglycerate 91.1 0.29 6.3E-06 46.6 4.5 30 7-37 152-181 (409)
142 PRK15469 ghrA bifunctional gly 91.1 0.32 6.9E-06 44.7 4.5 31 7-38 137-167 (312)
143 PRK12480 D-lactate dehydrogena 91.0 0.32 6.9E-06 45.0 4.5 30 7-37 147-176 (330)
144 PTZ00082 L-lactate dehydrogena 90.4 0.68 1.5E-05 42.6 6.1 32 7-39 7-38 (321)
145 PRK08818 prephenate dehydrogen 90.4 0.81 1.8E-05 43.1 6.7 31 6-36 4-35 (370)
146 TIGR01202 bchC 2-desacetyl-2-h 90.3 3.7 8E-05 36.9 10.8 31 8-39 147-177 (308)
147 PRK08306 dipicolinate synthase 90.3 0.85 1.8E-05 41.4 6.6 32 7-39 153-184 (296)
148 cd01483 E1_enzyme_family Super 90.2 0.48 1E-05 37.8 4.4 45 8-52 1-45 (143)
149 PRK15438 erythronate-4-phospha 90.2 0.4 8.6E-06 45.3 4.4 30 7-37 117-146 (378)
150 PLN02306 hydroxypyruvate reduc 90.1 0.42 9.1E-06 45.2 4.5 30 7-37 166-196 (386)
151 PLN02166 dTDP-glucose 4,6-dehy 90.0 1.6 3.4E-05 41.8 8.5 32 7-39 121-153 (436)
152 PLN02602 lactate dehydrogenase 89.8 0.58 1.3E-05 43.7 5.1 149 7-183 38-205 (350)
153 PF02629 CoA_binding: CoA bind 89.7 0.55 1.2E-05 35.2 4.1 90 6-126 3-92 (96)
154 PLN02214 cinnamoyl-CoA reducta 89.7 2.1 4.6E-05 39.1 8.8 31 7-38 11-42 (342)
155 PRK06249 2-dehydropantoate 2-r 89.6 2.1 4.5E-05 38.9 8.6 32 6-38 5-36 (313)
156 PLN03139 formate dehydrogenase 89.6 0.43 9.3E-06 45.2 4.2 30 7-37 200-229 (386)
157 PRK07417 arogenate dehydrogena 89.6 0.46 1E-05 42.5 4.2 30 7-37 1-30 (279)
158 PRK09880 L-idonate 5-dehydroge 89.5 2 4.4E-05 39.0 8.5 88 8-121 172-260 (343)
159 PRK11880 pyrroline-5-carboxyla 89.5 0.33 7.2E-06 42.8 3.2 25 5-29 1-25 (267)
160 cd05294 LDH-like_MDH_nadp A la 89.4 0.84 1.8E-05 41.7 5.8 31 7-37 1-33 (309)
161 PLN02256 arogenate dehydrogena 89.3 0.64 1.4E-05 42.5 5.0 33 6-39 36-68 (304)
162 PLN02206 UDP-glucuronate decar 89.2 1.8 4E-05 41.5 8.3 31 7-38 120-151 (442)
163 TIGR03366 HpnZ_proposed putati 88.9 2.1 4.5E-05 37.8 8.0 136 8-171 123-260 (280)
164 PRK00066 ldh L-lactate dehydro 88.6 3.4 7.4E-05 37.9 9.3 30 7-36 7-37 (315)
165 PRK13403 ketol-acid reductoiso 88.3 0.67 1.4E-05 43.0 4.4 32 7-39 17-48 (335)
166 COG0451 WcaG Nucleoside-diphos 88.2 2.5 5.5E-05 37.2 8.0 31 8-39 2-33 (314)
167 PRK00257 erythronate-4-phospha 87.9 0.71 1.5E-05 43.7 4.4 30 7-37 117-146 (381)
168 PRK00045 hemA glutamyl-tRNA re 87.8 1.3 2.9E-05 42.1 6.3 31 7-38 183-214 (423)
169 PRK08605 D-lactate dehydrogena 87.8 0.77 1.7E-05 42.4 4.5 31 7-37 147-177 (332)
170 PTZ00325 malate dehydrogenase; 87.7 4.6 0.0001 37.3 9.6 24 5-29 8-32 (321)
171 cd05290 LDH_3 A subgroup of L- 87.6 1.2 2.6E-05 40.8 5.6 22 8-29 1-22 (307)
172 PLN02712 arogenate dehydrogena 87.5 0.79 1.7E-05 46.4 4.7 34 5-39 368-401 (667)
173 PF03721 UDPG_MGDP_dh_N: UDP-g 87.3 0.82 1.8E-05 38.7 4.0 37 7-47 1-37 (185)
174 TIGR01327 PGDH D-3-phosphoglyc 87.2 0.8 1.7E-05 45.0 4.4 31 7-38 139-169 (525)
175 PF01488 Shikimate_DH: Shikima 87.0 1.4 3E-05 35.2 5.0 33 7-39 13-45 (135)
176 PLN00106 malate dehydrogenase 87.0 4.1 9E-05 37.6 8.8 23 7-29 19-42 (323)
177 cd05293 LDH_1 A subgroup of L- 86.9 1.1 2.4E-05 41.0 5.0 30 7-36 4-34 (312)
178 PRK13581 D-3-phosphoglycerate 86.8 0.85 1.8E-05 44.8 4.4 31 7-38 141-171 (526)
179 PRK07502 cyclohexadienyl dehyd 86.6 1.1 2.5E-05 40.4 4.9 37 1-37 1-38 (307)
180 PLN02712 arogenate dehydrogena 86.3 0.97 2.1E-05 45.8 4.6 32 7-39 53-84 (667)
181 PLN02662 cinnamyl-alcohol dehy 86.3 3.2 7E-05 37.0 7.6 30 7-37 5-35 (322)
182 PRK05086 malate dehydrogenase; 86.3 5.2 0.00011 36.6 9.0 30 7-36 1-33 (312)
183 PRK09599 6-phosphogluconate de 85.9 1.1 2.4E-05 40.5 4.3 31 7-38 1-31 (301)
184 PRK00094 gpsA NAD(P)H-dependen 85.9 1.2 2.6E-05 40.1 4.7 31 7-38 2-32 (325)
185 cd05291 HicDH_like L-2-hydroxy 85.5 1.9 4.2E-05 39.1 5.8 30 8-37 2-32 (306)
186 PLN02688 pyrroline-5-carboxyla 85.3 1.9 4.1E-05 37.9 5.5 33 7-39 1-36 (266)
187 PRK06718 precorrin-2 dehydroge 85.2 10 0.00022 32.4 9.8 30 7-37 11-40 (202)
188 PRK07634 pyrroline-5-carboxyla 85.2 2 4.4E-05 37.1 5.6 32 7-38 5-39 (245)
189 cd08239 THR_DH_like L-threonin 85.0 3.1 6.8E-05 37.5 6.9 96 8-127 166-262 (339)
190 PRK14618 NAD(P)H-dependent gly 85.0 1.4 3E-05 40.2 4.7 31 7-38 5-35 (328)
191 PRK12491 pyrroline-5-carboxyla 84.9 1.8 3.9E-05 38.8 5.2 33 5-37 1-36 (272)
192 cd08242 MDR_like Medium chain 84.8 8.5 0.00018 34.2 9.6 82 8-121 158-239 (319)
193 PRK12490 6-phosphogluconate de 84.6 1.4 3E-05 39.9 4.4 30 8-38 2-31 (299)
194 PF02737 3HCDH_N: 3-hydroxyacy 84.3 2.2 4.8E-05 35.8 5.2 29 8-37 1-29 (180)
195 TIGR00872 gnd_rel 6-phosphoglu 84.0 1.5 3.2E-05 39.7 4.3 31 7-38 1-31 (298)
196 PRK06129 3-hydroxyacyl-CoA deh 83.6 1.7 3.6E-05 39.4 4.5 31 7-38 3-33 (308)
197 COG0771 MurD UDP-N-acetylmuram 83.3 4.6 9.9E-05 39.1 7.5 87 7-121 8-94 (448)
198 cd08281 liver_ADH_like1 Zinc-d 83.1 3.4 7.4E-05 38.0 6.5 96 8-127 194-290 (371)
199 cd08298 CAD2 Cinnamyl alcohol 82.7 23 0.0005 31.4 11.6 83 8-123 170-252 (329)
200 TIGR02853 spore_dpaA dipicolin 82.7 1.9 4E-05 39.1 4.4 32 7-39 152-183 (287)
201 PRK06719 precorrin-2 dehydroge 82.6 18 0.00039 29.7 9.9 30 7-37 14-43 (157)
202 cd01338 MDH_choloroplast_like 82.6 3.2 6.9E-05 38.3 6.0 23 7-29 3-26 (322)
203 PRK08644 thiamine biosynthesis 82.5 0.87 1.9E-05 39.4 2.1 23 7-29 29-51 (212)
204 PRK14619 NAD(P)H-dependent gly 82.4 1.9 4E-05 39.1 4.3 31 7-38 5-35 (308)
205 TIGR01505 tartro_sem_red 2-hyd 82.4 1.6 3.4E-05 39.1 3.8 30 8-38 1-30 (291)
206 TIGR02354 thiF_fam2 thiamine b 82.4 0.84 1.8E-05 39.1 1.9 31 6-37 21-52 (200)
207 PLN00203 glutamyl-tRNA reducta 82.3 6.9 0.00015 38.6 8.4 33 7-39 267-299 (519)
208 PRK11908 NAD-dependent epimera 82.2 2.2 4.7E-05 38.9 4.7 32 7-38 2-34 (347)
209 PRK11154 fadJ multifunctional 82.2 2 4.4E-05 43.8 4.9 30 7-37 310-340 (708)
210 TIGR02437 FadB fatty oxidation 82.0 1.3 2.8E-05 45.3 3.4 38 7-48 314-351 (714)
211 PLN03209 translocon at the inn 82.0 6.4 0.00014 39.3 8.1 31 7-38 81-112 (576)
212 PLN02778 3,5-epimerase/4-reduc 81.9 3.7 7.9E-05 37.0 6.0 32 3-35 6-38 (298)
213 PRK01438 murD UDP-N-acetylmura 81.7 7 0.00015 37.5 8.2 30 7-37 17-46 (480)
214 PRK11064 wecC UDP-N-acetyl-D-m 81.6 2.1 4.6E-05 40.7 4.5 37 7-47 4-40 (415)
215 TIGR03201 dearomat_had 6-hydro 81.5 19 0.00042 32.7 10.8 29 8-37 169-197 (349)
216 TIGR03026 NDP-sugDHase nucleot 81.5 1.9 4.1E-05 40.8 4.2 30 7-37 1-30 (411)
217 PRK06476 pyrroline-5-carboxyla 81.4 3.1 6.7E-05 36.6 5.2 23 7-29 1-23 (258)
218 PRK05865 hypothetical protein; 81.3 6 0.00013 41.3 8.0 31 7-38 1-32 (854)
219 PF04321 RmlD_sub_bind: RmlD s 81.1 2.2 4.9E-05 38.2 4.3 31 7-38 1-32 (286)
220 COG5322 Predicted dehydrogenas 80.9 7.2 0.00016 35.6 7.3 63 96-161 230-293 (351)
221 TIGR02441 fa_ox_alpha_mit fatt 80.9 1.8 3.9E-05 44.4 4.0 40 7-50 336-375 (737)
222 cd01487 E1_ThiF_like E1_ThiF_l 80.7 1.3 2.9E-05 36.9 2.6 22 8-29 1-22 (174)
223 PRK11730 fadB multifunctional 80.6 2.2 4.7E-05 43.6 4.4 30 7-37 314-343 (715)
224 PRK15461 NADH-dependent gamma- 80.5 2.4 5.2E-05 38.3 4.3 31 7-38 2-32 (296)
225 KOG0068 D-3-phosphoglycerate d 80.5 2.4 5.3E-05 39.6 4.3 31 8-39 148-178 (406)
226 PRK08618 ornithine cyclodeamin 80.4 4.6 9.9E-05 37.1 6.2 93 7-128 128-220 (325)
227 PRK03369 murD UDP-N-acetylmura 80.4 8.7 0.00019 37.3 8.4 83 7-121 13-95 (488)
228 cd00757 ThiF_MoeB_HesA_family 80.3 1.4 3E-05 38.3 2.6 23 7-29 22-44 (228)
229 PF02254 TrkA_N: TrkA-N domain 80.2 3.4 7.3E-05 31.3 4.5 30 9-39 1-30 (116)
230 PRK09496 trkA potassium transp 80.1 2.5 5.4E-05 40.0 4.5 31 7-38 1-31 (453)
231 cd00755 YgdL_like Family of ac 80.0 3 6.5E-05 36.6 4.6 23 7-29 12-34 (231)
232 PRK07531 bifunctional 3-hydrox 79.9 2.6 5.6E-05 41.0 4.6 31 6-37 4-34 (495)
233 PF00208 ELFV_dehydrog: Glutam 79.9 2.7 5.9E-05 37.2 4.3 134 7-163 33-176 (244)
234 PRK15059 tartronate semialdehy 79.8 2.6 5.6E-05 38.1 4.3 29 8-37 2-30 (292)
235 TIGR02440 FadJ fatty oxidation 79.5 2.4 5.3E-05 43.1 4.4 39 7-49 305-344 (699)
236 PRK07066 3-hydroxybutyryl-CoA 79.5 3.2 7E-05 38.3 4.8 30 7-37 8-37 (321)
237 PLN02427 UDP-apiose/xylose syn 79.4 3.2 6.9E-05 38.5 4.8 34 6-39 14-48 (386)
238 PRK06988 putative formyltransf 79.3 2.7 5.9E-05 38.5 4.3 32 5-37 1-32 (312)
239 PF01073 3Beta_HSD: 3-beta hyd 79.0 9.4 0.0002 34.2 7.6 26 11-36 2-29 (280)
240 PRK07201 short chain dehydroge 78.9 17 0.00036 36.1 10.1 33 7-39 1-35 (657)
241 PRK05678 succinyl-CoA syntheta 78.8 5.9 0.00013 36.1 6.3 85 6-126 8-95 (291)
242 cd08237 ribitol-5-phosphate_DH 78.8 14 0.0003 33.7 8.8 30 8-37 166-196 (341)
243 PLN02586 probable cinnamyl alc 78.5 12 0.00027 34.3 8.5 30 8-38 186-215 (360)
244 COG0334 GdhA Glutamate dehydro 78.5 19 0.00041 34.4 9.7 32 7-39 208-239 (411)
245 PRK06444 prephenate dehydrogen 78.4 2.7 5.9E-05 36.1 3.7 23 7-29 1-24 (197)
246 TIGR03451 mycoS_dep_FDH mycoth 78.2 20 0.00043 32.7 9.7 29 8-37 179-208 (358)
247 PLN02545 3-hydroxybutyryl-CoA 78.2 3.4 7.3E-05 37.1 4.5 31 7-38 5-35 (295)
248 KOG0069 Glyoxylate/hydroxypyru 78.1 1.8 3.8E-05 40.3 2.7 23 7-29 163-185 (336)
249 PRK07679 pyrroline-5-carboxyla 78.0 3.4 7.4E-05 36.8 4.5 31 7-37 4-37 (279)
250 PRK06522 2-dehydropantoate 2-r 77.9 3.4 7.5E-05 36.7 4.5 31 7-38 1-31 (304)
251 PRK05442 malate dehydrogenase; 77.7 4.6 9.9E-05 37.3 5.3 22 7-28 5-27 (326)
252 PRK06928 pyrroline-5-carboxyla 77.7 3.6 7.9E-05 36.8 4.5 32 7-38 2-36 (277)
253 PTZ00075 Adenosylhomocysteinas 77.7 3.4 7.4E-05 40.3 4.6 30 7-37 255-284 (476)
254 PRK12475 thiamine/molybdopteri 77.6 3.9 8.5E-05 37.9 4.9 23 7-29 25-47 (338)
255 COG0702 Predicted nucleoside-d 77.6 3.2 7E-05 35.7 4.1 32 7-39 1-33 (275)
256 cd01337 MDH_glyoxysomal_mitoch 77.4 5 0.00011 36.9 5.4 23 7-29 1-24 (310)
257 PRK05479 ketol-acid reductoiso 77.4 3.3 7.1E-05 38.5 4.2 31 7-38 18-48 (330)
258 cd08296 CAD_like Cinnamyl alco 77.3 12 0.00025 33.7 7.8 95 8-128 166-260 (333)
259 PRK05708 2-dehydropantoate 2-r 76.9 3.5 7.7E-05 37.4 4.3 33 5-38 1-33 (305)
260 TIGR02717 AcCoA-syn-alpha acet 76.9 10 0.00022 36.5 7.6 81 7-126 8-94 (447)
261 PRK15116 sulfur acceptor prote 76.8 3.5 7.5E-05 37.2 4.1 23 7-29 31-53 (268)
262 PRK03659 glutathione-regulated 76.6 4.2 9.1E-05 40.6 5.1 39 7-49 401-439 (601)
263 PLN02514 cinnamyl-alcohol dehy 76.5 24 0.00051 32.3 9.7 136 8-176 183-319 (357)
264 PRK06035 3-hydroxyacyl-CoA deh 76.5 4 8.7E-05 36.6 4.5 30 7-37 4-33 (291)
265 PTZ00431 pyrroline carboxylate 76.4 2.7 5.9E-05 37.2 3.3 23 7-29 4-26 (260)
266 KOG4039 Serine/threonine kinas 76.2 11 0.00023 32.5 6.6 27 7-33 19-46 (238)
267 PRK15182 Vi polysaccharide bio 76.1 4.2 9E-05 38.9 4.7 31 6-38 6-36 (425)
268 PRK03562 glutathione-regulated 76.0 4.4 9.6E-05 40.7 5.0 39 7-49 401-439 (621)
269 cd08301 alcohol_DH_plants Plan 76.0 8.1 0.00018 35.4 6.5 30 8-38 190-220 (369)
270 PRK09260 3-hydroxybutyryl-CoA 75.9 4 8.7E-05 36.5 4.3 39 8-50 3-41 (288)
271 PRK04690 murD UDP-N-acetylmura 75.7 7.9 0.00017 37.3 6.6 31 7-39 9-39 (468)
272 PRK01710 murD UDP-N-acetylmura 75.5 8.5 0.00018 36.9 6.7 31 7-39 15-45 (458)
273 PRK05690 molybdopterin biosynt 75.4 2.5 5.4E-05 37.3 2.8 115 7-129 33-154 (245)
274 TIGR02356 adenyl_thiF thiazole 75.4 2.2 4.7E-05 36.5 2.3 30 7-37 22-52 (202)
275 PRK07877 hypothetical protein; 75.1 1.5 3.4E-05 44.8 1.6 116 7-130 108-229 (722)
276 cd08294 leukotriene_B4_DH_like 75.1 5.8 0.00013 35.2 5.2 90 8-122 146-236 (329)
277 TIGR01019 sucCoAalpha succinyl 74.7 12 0.00026 34.0 7.1 31 7-37 7-38 (286)
278 PRK02006 murD UDP-N-acetylmura 74.5 8.7 0.00019 37.2 6.5 30 7-37 8-37 (498)
279 PRK06130 3-hydroxybutyryl-CoA 74.4 5.1 0.00011 36.1 4.6 30 7-37 5-34 (311)
280 PRK15057 UDP-glucose 6-dehydro 74.3 4.2 9.1E-05 38.4 4.2 40 7-51 1-40 (388)
281 TIGR00465 ilvC ketol-acid redu 74.2 4.5 9.9E-05 37.2 4.3 32 7-39 4-35 (314)
282 TIGR01759 MalateDH-SF1 malate 74.1 6.7 0.00014 36.2 5.4 23 7-29 4-27 (323)
283 COG1087 GalE UDP-glucose 4-epi 73.7 12 0.00025 34.7 6.6 33 7-40 1-34 (329)
284 PLN02740 Alcohol dehydrogenase 73.4 9.8 0.00021 35.2 6.4 29 8-37 201-230 (381)
285 TIGR02355 moeB molybdopterin s 73.1 2.9 6.2E-05 36.9 2.6 23 7-29 25-47 (240)
286 PTZ00142 6-phosphogluconate de 73.0 4.4 9.6E-05 39.4 4.1 32 7-39 2-33 (470)
287 COG1179 Dinucleotide-utilizing 73.0 4.3 9.3E-05 36.3 3.6 123 7-137 31-164 (263)
288 PLN02494 adenosylhomocysteinas 72.8 5.4 0.00012 38.9 4.5 30 7-37 255-284 (477)
289 TIGR00936 ahcY adenosylhomocys 72.7 5.5 0.00012 38.1 4.5 30 7-37 196-225 (406)
290 PLN00141 Tic62-NAD(P)-related 72.6 6.1 0.00013 34.2 4.6 31 7-38 18-49 (251)
291 PF01262 AlaDh_PNT_C: Alanine 72.4 10 0.00022 31.1 5.6 32 7-39 21-52 (168)
292 PLN02178 cinnamyl-alcohol dehy 71.9 15 0.00033 34.1 7.3 132 8-171 181-313 (375)
293 PRK07680 late competence prote 71.8 8.6 0.00019 34.1 5.4 23 7-29 1-23 (273)
294 PRK12921 2-dehydropantoate 2-r 71.8 5.6 0.00012 35.4 4.2 30 7-37 1-30 (305)
295 cd08255 2-desacetyl-2-hydroxye 71.7 26 0.00057 30.2 8.4 29 8-37 100-129 (277)
296 PRK10675 UDP-galactose-4-epime 71.5 6.1 0.00013 35.5 4.4 31 7-38 1-32 (338)
297 cd08233 butanediol_DH_like (2R 71.4 35 0.00075 30.8 9.4 29 8-37 175-204 (351)
298 PLN02695 GDP-D-mannose-3',5'-e 71.4 6 0.00013 36.7 4.4 31 7-38 22-53 (370)
299 TIGR01087 murD UDP-N-acetylmur 71.3 12 0.00026 35.4 6.5 30 8-39 1-30 (433)
300 COG0373 HemA Glutamyl-tRNA red 71.3 6.3 0.00014 37.8 4.6 33 7-39 179-211 (414)
301 PRK10669 putative cation:proto 70.9 7.1 0.00015 38.4 5.1 32 6-38 417-448 (558)
302 PRK09424 pntA NAD(P) transhydr 70.8 26 0.00056 34.5 8.8 31 7-39 166-196 (509)
303 cd01486 Apg7 Apg7 is an E1-lik 70.8 4.8 0.0001 37.0 3.5 22 8-29 1-22 (307)
304 PRK08655 prephenate dehydrogen 70.7 6.2 0.00013 37.9 4.5 30 7-37 1-31 (437)
305 cd01484 E1-2_like Ubiquitin ac 70.6 5.6 0.00012 35.0 3.8 22 8-29 1-22 (234)
306 PLN02353 probable UDP-glucose 70.5 6.9 0.00015 38.1 4.8 40 7-49 2-42 (473)
307 PRK14106 murD UDP-N-acetylmura 70.5 19 0.00041 34.1 7.7 93 7-128 6-98 (450)
308 KOG0455 Homoserine dehydrogena 70.4 5 0.00011 36.2 3.5 34 6-39 3-44 (364)
309 cd08254 hydroxyacyl_CoA_DH 6-h 70.4 13 0.00029 32.9 6.3 95 8-126 168-262 (338)
310 COG1062 AdhC Zn-dependent alco 69.9 13 0.00029 34.8 6.2 88 8-118 188-276 (366)
311 PRK00141 murD UDP-N-acetylmura 69.9 28 0.0006 33.6 8.8 30 7-37 16-45 (473)
312 cd01339 LDH-like_MDH L-lactate 69.9 7.1 0.00015 35.2 4.5 28 9-36 1-28 (300)
313 TIGR02818 adh_III_F_hyde S-(hy 69.6 13 0.00029 34.1 6.4 29 8-37 188-217 (368)
314 PRK08293 3-hydroxybutyryl-CoA 69.5 7.5 0.00016 34.8 4.5 30 7-37 4-33 (287)
315 TIGR01757 Malate-DH_plant mala 69.2 9.8 0.00021 36.1 5.4 24 6-29 44-68 (387)
316 PRK10309 galactitol-1-phosphat 69.0 16 0.00035 33.1 6.6 29 8-37 163-192 (347)
317 PLN02657 3,8-divinyl protochlo 68.8 8.5 0.00018 36.1 4.9 32 7-39 61-93 (390)
318 PRK06545 prephenate dehydrogen 68.7 6.4 0.00014 36.6 4.0 22 8-29 2-23 (359)
319 PLN02350 phosphogluconate dehy 68.4 6.3 0.00014 38.6 4.0 128 7-147 7-157 (493)
320 cd00704 MDH Malate dehydrogena 68.2 11 0.00023 34.8 5.3 23 7-29 1-24 (323)
321 PRK08219 short chain dehydroge 68.2 7.7 0.00017 32.3 4.1 31 6-38 3-34 (227)
322 cd05283 CAD1 Cinnamyl alcohol 67.7 53 0.0011 29.5 9.8 86 8-121 172-257 (337)
323 PRK06046 alanine dehydrogenase 67.7 13 0.00029 34.1 5.8 34 6-39 129-162 (326)
324 cd05213 NAD_bind_Glutamyl_tRNA 67.6 7.9 0.00017 35.3 4.3 31 7-37 179-209 (311)
325 TIGR00561 pntA NAD(P) transhyd 67.4 25 0.00054 34.7 7.9 29 7-36 165-193 (511)
326 TIGR03466 HpnA hopanoid-associ 67.4 7.6 0.00016 34.4 4.1 31 8-39 2-33 (328)
327 PRK10083 putative oxidoreducta 67.3 29 0.00063 31.0 8.0 30 8-38 163-193 (339)
328 PRK05476 S-adenosyl-L-homocyst 67.2 8.2 0.00018 37.1 4.5 30 7-37 213-242 (425)
329 cd08278 benzyl_alcohol_DH Benz 67.0 14 0.0003 34.0 5.8 29 8-37 189-218 (365)
330 TIGR01214 rmlD dTDP-4-dehydror 66.9 8 0.00017 33.8 4.1 30 8-38 1-31 (287)
331 cd08289 MDR_yhfp_like Yhfp put 66.9 29 0.00062 30.7 7.8 94 8-127 149-243 (326)
332 cd08234 threonine_DH_like L-th 66.7 21 0.00046 31.7 6.9 29 8-37 162-191 (334)
333 PRK15181 Vi polysaccharide bio 66.6 8.7 0.00019 35.1 4.4 31 7-38 16-47 (348)
334 cd08269 Zn_ADH9 Alcohol dehydr 66.6 18 0.0004 31.6 6.4 30 8-38 132-162 (312)
335 PLN00112 malate dehydrogenase 66.5 11 0.00024 36.5 5.2 23 6-28 100-123 (444)
336 cd00300 LDH_like L-lactate deh 66.4 20 0.00044 32.5 6.7 21 9-29 1-21 (300)
337 COG1064 AdhP Zn-dependent alco 66.4 48 0.001 30.9 9.2 92 8-129 169-261 (339)
338 PLN02240 UDP-glucose 4-epimera 66.3 9.2 0.0002 34.5 4.5 31 7-38 6-37 (352)
339 PRK10217 dTDP-glucose 4,6-dehy 66.3 8.5 0.00018 34.9 4.3 29 7-36 2-31 (355)
340 PLN02827 Alcohol dehydrogenase 65.9 17 0.00037 33.7 6.3 28 8-36 196-224 (378)
341 cd05292 LDH_2 A subgroup of L- 65.9 9.2 0.0002 34.8 4.4 30 7-36 1-31 (308)
342 PRK03806 murD UDP-N-acetylmura 65.9 31 0.00066 32.7 8.1 89 7-128 7-95 (438)
343 PRK09291 short chain dehydroge 65.9 11 0.00023 32.3 4.6 33 5-38 1-34 (257)
344 PRK08017 oxidoreductase; Provi 65.7 11 0.00024 32.2 4.7 33 5-38 1-34 (256)
345 PLN02896 cinnamyl-alcohol dehy 65.7 9.8 0.00021 34.7 4.6 31 7-38 11-42 (353)
346 KOG1203 Predicted dehydrogenas 65.3 7.5 0.00016 37.2 3.8 30 7-37 80-110 (411)
347 cd08235 iditol_2_DH_like L-idi 65.2 21 0.00046 31.9 6.6 29 8-37 168-197 (343)
348 PRK08328 hypothetical protein; 65.1 5.9 0.00013 34.6 2.9 23 7-29 28-50 (231)
349 cd08245 CAD Cinnamyl alcohol d 65.0 40 0.00087 29.9 8.4 31 8-39 165-195 (330)
350 PLN02260 probable rhamnose bio 64.9 11 0.00023 37.9 5.1 40 5-46 379-420 (668)
351 cd01336 MDH_cytoplasmic_cytoso 64.9 11 0.00024 34.7 4.8 32 6-37 2-40 (325)
352 COG0345 ProC Pyrroline-5-carbo 64.9 14 0.00031 33.2 5.3 38 7-47 2-42 (266)
353 cd08300 alcohol_DH_class_III c 64.4 63 0.0014 29.5 9.8 29 8-37 189-218 (368)
354 cd01065 NAD_bind_Shikimate_DH 64.4 13 0.00027 29.5 4.5 31 7-37 20-50 (155)
355 cd08295 double_bond_reductase_ 64.4 18 0.0004 32.5 6.1 30 8-38 154-184 (338)
356 PRK03803 murD UDP-N-acetylmura 64.1 23 0.0005 33.6 6.9 30 8-39 8-37 (448)
357 TIGR01772 MDH_euk_gproteo mala 64.1 19 0.00042 33.0 6.2 22 8-29 1-23 (312)
358 cd08246 crotonyl_coA_red croto 64.0 94 0.002 28.6 10.9 29 8-37 196-225 (393)
359 PRK09987 dTDP-4-dehydrorhamnos 64.0 9.3 0.0002 34.1 4.0 29 7-37 1-30 (299)
360 PRK07326 short chain dehydroge 64.0 14 0.0003 31.2 4.9 31 7-38 7-38 (237)
361 cd05191 NAD_bind_amino_acid_DH 63.8 16 0.00034 26.5 4.5 23 7-29 24-46 (86)
362 PRK09496 trkA potassium transp 63.8 11 0.00024 35.5 4.7 31 7-38 232-262 (453)
363 cd08231 MDR_TM0436_like Hypoth 63.7 64 0.0014 29.2 9.6 29 8-37 180-209 (361)
364 cd08277 liver_alcohol_DH_like 63.7 22 0.00048 32.5 6.6 29 8-37 187-216 (365)
365 PRK07023 short chain dehydroge 63.2 12 0.00025 31.9 4.3 30 7-37 2-32 (243)
366 cd08260 Zn_ADH6 Alcohol dehydr 62.9 21 0.00046 32.0 6.2 31 8-39 168-198 (345)
367 PRK00421 murC UDP-N-acetylmura 62.9 47 0.001 31.7 8.9 31 7-39 8-39 (461)
368 PLN02260 probable rhamnose bio 62.5 12 0.00027 37.5 5.0 34 5-38 5-40 (668)
369 PF01370 Epimerase: NAD depend 62.5 14 0.00031 30.8 4.7 30 9-39 1-31 (236)
370 PLN02858 fructose-bisphosphate 62.5 10 0.00022 41.7 4.6 36 2-38 320-355 (1378)
371 cd08292 ETR_like_2 2-enoyl thi 62.4 28 0.0006 30.7 6.8 31 8-39 142-173 (324)
372 PRK02705 murD UDP-N-acetylmura 62.4 17 0.00038 34.5 5.7 29 8-37 2-30 (459)
373 TIGR02825 B4_12hDH leukotriene 62.1 24 0.00052 31.5 6.4 30 8-38 141-171 (325)
374 cd08284 FDH_like_2 Glutathione 62.1 14 0.00031 33.0 4.9 28 8-36 170-198 (344)
375 PRK02318 mannitol-1-phosphate 61.9 9.7 0.00021 35.7 3.9 31 7-37 1-31 (381)
376 cd08270 MDR4 Medium chain dehy 61.9 98 0.0021 26.8 10.1 87 8-127 135-222 (305)
377 TIGR00873 gnd 6-phosphoglucona 61.7 9 0.0002 37.2 3.7 39 8-50 1-39 (467)
378 PLN02572 UDP-sulfoquinovose sy 61.5 12 0.00026 35.8 4.5 30 7-37 48-78 (442)
379 PRK06153 hypothetical protein; 61.5 5.6 0.00012 37.8 2.1 31 7-37 177-207 (393)
380 PRK12827 short chain dehydroge 61.5 16 0.00035 30.8 4.9 31 6-37 6-37 (249)
381 PLN03154 putative allyl alcoho 61.5 22 0.00048 32.5 6.1 29 8-37 161-190 (348)
382 PRK05600 thiamine biosynthesis 61.3 5.3 0.00011 37.6 2.0 111 7-121 42-157 (370)
383 TIGR01181 dTDP_gluc_dehyt dTDP 60.5 11 0.00025 32.9 3.9 31 8-38 1-33 (317)
384 PRK08125 bifunctional UDP-gluc 60.4 12 0.00027 37.5 4.6 33 7-39 316-349 (660)
385 PRK10754 quinone oxidoreductas 60.4 23 0.0005 31.4 5.9 31 8-39 143-174 (327)
386 TIGR00715 precor6x_red precorr 60.4 11 0.00024 33.7 3.7 30 7-38 1-31 (256)
387 TIGR01035 hemA glutamyl-tRNA r 60.3 13 0.00029 35.3 4.5 33 7-39 181-213 (417)
388 cd08287 FDH_like_ADH3 formalde 60.1 54 0.0012 29.3 8.3 29 8-37 171-200 (345)
389 PRK06019 phosphoribosylaminoim 59.9 15 0.00033 34.2 4.8 31 7-38 3-33 (372)
390 TIGR00518 alaDH alanine dehydr 59.8 14 0.0003 34.7 4.5 30 7-37 168-197 (370)
391 cd00650 LDH_MDH_like NAD-depen 59.5 4.8 0.0001 35.6 1.3 21 9-29 1-22 (263)
392 cd08262 Zn_ADH8 Alcohol dehydr 59.4 33 0.00072 30.7 6.8 39 8-49 164-202 (341)
393 cd05280 MDR_yhdh_yhfp Yhdh and 59.4 35 0.00076 30.0 6.9 29 8-37 149-178 (325)
394 PRK10084 dTDP-glucose 4,6 dehy 59.1 13 0.00029 33.6 4.2 31 7-37 1-32 (352)
395 TIGR01763 MalateDH_bact malate 59.0 15 0.00034 33.4 4.6 31 7-37 2-32 (305)
396 cd08263 Zn_ADH10 Alcohol dehyd 59.0 92 0.002 28.3 9.7 29 8-37 190-219 (367)
397 PF07991 IlvN: Acetohydroxy ac 58.5 15 0.00032 30.8 3.9 32 7-39 5-36 (165)
398 PRK12826 3-ketoacyl-(acyl-carr 58.5 19 0.00042 30.3 4.9 33 6-39 6-39 (251)
399 cd08293 PTGR2 Prostaglandin re 58.4 30 0.00064 31.0 6.3 30 8-38 157-188 (345)
400 cd01490 Ube1_repeat2 Ubiquitin 58.3 14 0.00031 35.6 4.4 22 8-29 1-22 (435)
401 PF00070 Pyr_redox: Pyridine n 58.3 23 0.0005 25.0 4.6 29 8-37 1-29 (80)
402 COG1023 Gnd Predicted 6-phosph 58.3 17 0.00037 32.7 4.5 43 7-53 1-43 (300)
403 PRK05597 molybdopterin biosynt 58.2 8.7 0.00019 35.8 2.8 23 7-29 29-51 (355)
404 PRK07454 short chain dehydroge 58.1 21 0.00045 30.2 5.0 31 7-38 7-38 (241)
405 TIGR02819 fdhA_non_GSH formald 57.8 38 0.00082 31.7 7.1 31 8-39 188-218 (393)
406 PLN00198 anthocyanidin reducta 57.6 15 0.00033 33.1 4.3 30 7-37 10-40 (338)
407 COG0677 WecC UDP-N-acetyl-D-ma 57.5 13 0.00028 35.6 3.7 33 4-37 7-39 (436)
408 PRK12320 hypothetical protein; 57.5 15 0.00032 37.6 4.5 31 7-38 1-32 (699)
409 cd08236 sugar_DH NAD(P)-depend 57.4 44 0.00096 29.9 7.3 30 8-38 162-192 (343)
410 PRK06947 glucose-1-dehydrogena 57.3 17 0.00038 30.8 4.4 31 5-36 1-32 (248)
411 PRK12745 3-ketoacyl-(acyl-carr 57.2 19 0.00041 30.7 4.6 33 5-38 1-34 (256)
412 cd00401 AdoHcyase S-adenosyl-L 57.2 17 0.00036 34.9 4.6 29 7-36 203-231 (413)
413 cd08259 Zn_ADH5 Alcohol dehydr 57.1 50 0.0011 29.0 7.5 29 8-37 165-194 (332)
414 cd05288 PGDH Prostaglandin deh 57.1 23 0.0005 31.3 5.3 30 8-38 148-178 (329)
415 PRK04308 murD UDP-N-acetylmura 57.1 37 0.0008 32.2 7.0 30 7-37 6-35 (445)
416 PF00899 ThiF: ThiF family; I 57.0 21 0.00045 28.0 4.5 103 7-115 3-111 (135)
417 PRK04663 murD UDP-N-acetylmura 56.9 52 0.0011 31.2 8.0 84 7-121 8-93 (438)
418 PRK00683 murD UDP-N-acetylmura 56.8 15 0.00032 34.7 4.2 86 7-128 4-89 (418)
419 cd08252 AL_MDR Arginate lyase 56.8 49 0.0011 29.3 7.4 95 8-126 152-247 (336)
420 PRK10538 malonic semialdehyde 56.8 18 0.0004 30.9 4.5 31 7-38 1-32 (248)
421 PRK14806 bifunctional cyclohex 56.5 16 0.00035 37.1 4.7 33 5-37 2-35 (735)
422 PRK05653 fabG 3-ketoacyl-(acyl 56.4 20 0.00043 30.0 4.5 32 7-39 6-38 (246)
423 PF02558 ApbA: Ketopantoate re 56.2 22 0.00048 28.0 4.6 30 9-39 1-30 (151)
424 cd08232 idonate-5-DH L-idonate 56.1 88 0.0019 27.8 9.0 29 8-37 168-197 (339)
425 PRK14620 NAD(P)H-dependent gly 56.1 18 0.00039 32.8 4.5 29 7-36 1-29 (326)
426 PRK05565 fabG 3-ketoacyl-(acyl 56.1 23 0.0005 29.8 4.9 29 7-36 6-35 (247)
427 cd05279 Zn_ADH1 Liver alcohol 55.8 30 0.00066 31.6 6.0 28 8-36 186-214 (365)
428 PRK08163 salicylate hydroxylas 55.6 19 0.0004 33.2 4.6 32 5-37 3-34 (396)
429 cd05284 arabinose_DH_like D-ar 55.4 44 0.00095 29.8 6.9 31 8-38 170-200 (340)
430 PRK09135 pteridine reductase; 55.4 24 0.00052 29.7 5.0 31 7-38 7-38 (249)
431 KOG0022 Alcohol dehydrogenase, 55.0 25 0.00054 32.8 5.1 96 8-126 195-293 (375)
432 TIGR01179 galE UDP-glucose-4-e 54.9 17 0.00037 31.9 4.1 29 8-37 1-30 (328)
433 cd08249 enoyl_reductase_like e 54.4 45 0.00097 30.0 6.8 29 8-37 157-186 (339)
434 PRK15076 alpha-galactosidase; 54.3 17 0.00037 34.9 4.2 13 7-19 2-14 (431)
435 cd08258 Zn_ADH4 Alcohol dehydr 54.3 85 0.0018 27.8 8.5 28 8-36 167-194 (306)
436 TIGR01777 yfcH conserved hypot 54.1 15 0.00032 31.9 3.5 30 9-39 1-31 (292)
437 cd08285 NADP_ADH NADP(H)-depen 54.0 26 0.00056 31.7 5.2 29 8-37 169-198 (351)
438 cd05188 MDR Medium chain reduc 54.0 42 0.00091 28.3 6.3 30 8-38 137-166 (271)
439 PRK08132 FAD-dependent oxidore 53.6 21 0.00045 34.9 4.7 35 2-37 19-53 (547)
440 PLN02702 L-idonate 5-dehydroge 53.6 27 0.00059 31.8 5.3 28 8-36 184-212 (364)
441 cd08240 6_hydroxyhexanoate_dh_ 53.2 36 0.00078 30.7 6.0 90 8-121 178-268 (350)
442 PLN02583 cinnamoyl-CoA reducta 53.1 21 0.00047 31.7 4.4 31 7-38 7-38 (297)
443 TIGR00507 aroE shikimate 5-deh 52.8 80 0.0017 27.9 8.0 32 7-39 118-149 (270)
444 PLN02986 cinnamyl-alcohol dehy 52.5 34 0.00074 30.5 5.6 32 7-39 6-38 (322)
445 PRK12829 short chain dehydroge 52.5 20 0.00044 30.6 4.0 31 7-38 12-43 (264)
446 TIGR01470 cysG_Nterm siroheme 52.4 66 0.0014 27.5 7.1 30 7-37 10-39 (205)
447 PRK08267 short chain dehydroge 52.3 25 0.00054 30.2 4.6 29 8-37 3-32 (260)
448 cd08250 Mgc45594_like Mgc45594 52.1 37 0.0008 30.1 5.8 31 8-39 142-173 (329)
449 PRK02472 murD UDP-N-acetylmura 51.9 85 0.0019 29.6 8.5 29 7-36 6-34 (447)
450 PRK06185 hypothetical protein; 51.9 23 0.00051 32.7 4.6 37 1-38 1-37 (407)
451 PRK14573 bifunctional D-alanyl 51.9 59 0.0013 33.6 7.9 30 8-39 6-36 (809)
452 TIGR01751 crot-CoA-red crotony 51.4 1.1E+02 0.0023 28.4 9.0 29 8-37 192-221 (398)
453 TIGR03570 NeuD_NnaD sugar O-ac 51.3 26 0.00056 28.7 4.4 31 8-39 1-31 (201)
454 PLN02989 cinnamyl-alcohol dehy 51.3 29 0.00063 30.9 5.0 34 1-36 1-35 (325)
455 COG1893 ApbA Ketopantoate redu 51.1 20 0.00044 32.7 3.9 30 7-37 1-30 (307)
456 cd01080 NAD_bind_m-THF_DH_Cycl 51.0 41 0.00088 28.0 5.5 32 7-39 45-77 (168)
457 TIGR01472 gmd GDP-mannose 4,6- 51.0 25 0.00054 31.8 4.6 31 8-39 2-33 (343)
458 PRK12828 short chain dehydroge 50.7 31 0.00067 28.7 4.8 31 7-38 8-39 (239)
459 KOG2380 Prephenate dehydrogena 50.7 20 0.00043 33.9 3.8 24 6-29 52-75 (480)
460 PRK11150 rfaD ADP-L-glycero-D- 50.6 22 0.00048 31.5 4.1 30 9-39 2-32 (308)
461 PRK08177 short chain dehydroge 50.2 29 0.00063 29.2 4.6 31 8-39 3-34 (225)
462 PF00670 AdoHcyase_NAD: S-aden 50.1 28 0.0006 29.1 4.2 88 7-132 24-113 (162)
463 cd08238 sorbose_phosphate_red 50.1 91 0.002 29.1 8.3 30 8-37 178-210 (410)
464 PRK07666 fabG 3-ketoacyl-(acyl 50.0 33 0.00072 28.9 5.0 38 1-39 1-40 (239)
465 PRK07102 short chain dehydroge 49.8 29 0.00063 29.4 4.6 31 7-38 2-33 (243)
466 PRK07231 fabG 3-ketoacyl-(acyl 49.5 35 0.00075 28.8 5.0 32 7-39 6-38 (251)
467 PRK06924 short chain dehydroge 49.4 30 0.00064 29.4 4.6 30 8-38 3-33 (251)
468 PRK07024 short chain dehydroge 49.3 30 0.00065 29.7 4.6 32 5-37 1-33 (257)
469 PRK12439 NAD(P)H-dependent gly 49.2 24 0.00052 32.5 4.2 23 7-29 8-30 (341)
470 PRK05586 biotin carboxylase; V 48.9 24 0.00053 33.6 4.3 32 5-37 1-32 (447)
471 PF00289 CPSase_L_chain: Carba 48.6 23 0.0005 27.4 3.4 34 5-39 1-34 (110)
472 COG1091 RfbD dTDP-4-dehydrorha 48.6 19 0.00042 32.7 3.4 42 7-50 1-46 (281)
473 TIGR02371 ala_DH_arch alanine 48.5 46 0.001 30.5 5.9 34 6-39 128-161 (325)
474 cd08286 FDH_like_ADH2 formalde 48.3 47 0.001 29.7 5.9 30 8-37 169-198 (345)
475 KOG2742 Predicted oxidoreducta 48.1 8.1 0.00017 36.1 0.8 93 8-130 4-96 (367)
476 PRK12825 fabG 3-ketoacyl-(acyl 47.6 39 0.00084 28.2 5.0 30 7-37 7-37 (249)
477 TIGR02622 CDP_4_6_dhtase CDP-g 47.6 32 0.0007 31.2 4.8 30 7-37 5-35 (349)
478 KOG0024 Sorbitol dehydrogenase 47.4 36 0.00078 31.8 4.9 25 96-120 242-266 (354)
479 PRK03815 murD UDP-N-acetylmura 47.2 26 0.00057 33.2 4.2 28 7-36 1-28 (401)
480 PRK07236 hypothetical protein; 46.9 36 0.00078 31.4 5.0 32 6-38 6-37 (386)
481 PRK05993 short chain dehydroge 46.6 34 0.00074 29.9 4.6 33 5-38 3-36 (277)
482 PRK08223 hypothetical protein; 46.4 30 0.00064 31.6 4.2 23 7-29 28-50 (287)
483 PRK05884 short chain dehydroge 46.3 32 0.0007 29.1 4.3 29 8-37 2-31 (223)
484 cd08261 Zn_ADH7 Alcohol dehydr 46.3 72 0.0016 28.4 6.8 30 8-38 162-191 (337)
485 cd01078 NAD_bind_H4MPT_DH NADP 46.2 35 0.00077 28.4 4.5 31 7-38 29-60 (194)
486 PRK12824 acetoacetyl-CoA reduc 46.2 36 0.00078 28.6 4.6 32 5-37 1-33 (245)
487 COG2084 MmsB 3-hydroxyisobutyr 46.1 29 0.00063 31.6 4.1 127 7-147 1-146 (286)
488 TIGR01771 L-LDH-NAD L-lactate 45.9 23 0.0005 32.2 3.5 20 11-30 1-20 (299)
489 PF00107 ADH_zinc_N: Zinc-bind 45.9 7.3 0.00016 29.8 0.2 91 17-130 2-92 (130)
490 PF01210 NAD_Gly3P_dh_N: NAD-d 45.6 32 0.0007 27.8 4.0 100 8-129 1-103 (157)
491 TIGR00514 accC acetyl-CoA carb 45.6 32 0.00069 32.8 4.5 32 5-37 1-32 (449)
492 PRK07074 short chain dehydroge 45.5 37 0.00079 29.0 4.6 31 7-38 3-34 (257)
493 PRK05693 short chain dehydroge 45.1 38 0.00082 29.4 4.6 29 8-37 3-32 (274)
494 PRK13394 3-hydroxybutyrate deh 45.1 43 0.00093 28.5 4.9 31 7-38 8-39 (262)
495 PRK08628 short chain dehydroge 44.8 40 0.00087 28.8 4.7 36 1-37 1-38 (258)
496 PRK06482 short chain dehydroge 44.7 37 0.00081 29.4 4.5 33 5-38 1-34 (276)
497 PLN02650 dihydroflavonol-4-red 44.6 38 0.00082 30.7 4.7 30 7-37 6-36 (351)
498 PRK07878 molybdopterin biosynt 44.3 13 0.00028 35.2 1.6 24 6-29 42-65 (392)
499 cd05286 QOR2 Quinone oxidoredu 44.2 66 0.0014 27.6 6.0 30 8-38 139-169 (320)
500 cd08279 Zn_ADH_class_III Class 43.7 62 0.0014 29.4 6.0 30 8-38 185-215 (363)
No 1
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-83 Score=585.69 Aligned_cols=241 Identities=54% Similarity=0.848 Sum_probs=229.4
Q ss_pred CceeEEEEcCChHHHHHHHHHHcC----CCceEEEeeCCCCChhHHhhhhccccccccCCCcceEE--------eCCeee
Q 025639 5 KKIKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV--------KDEKTL 72 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~----~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~--------~~~~~l 72 (250)
|++||||||||||||.++|++.++ +++|+|||||++.++++++|||||||+||+|+ ++++. +++ .|
T Consensus 2 m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~~~~~~~~~-~l 79 (361)
T PTZ00434 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK-YTVETTKSSPSVKTDD-VL 79 (361)
T ss_pred CceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcC-CceeecccccccccCC-EE
Confidence 568999999999999999998874 57999999997799999999999999999999 89988 666 69
Q ss_pred EECCEEEEEE-ecCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCC-CCeEEeecCccccCC-CC
Q 025639 73 LFGEKPVAVF-GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-EL 149 (250)
Q Consensus 73 ~~~g~~i~v~-~~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d-~p~iV~gVN~~~~~~-~~ 149 (250)
.+||++|.++ +++||+++||++.|+|||+||||.|++++.++.|+++||||||||+|++| .|+||+|||++.|++ .+
T Consensus 80 ~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~ 159 (361)
T PTZ00434 80 VVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEH 159 (361)
T ss_pred EECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccC
Confidence 9999999986 99999999999999999999999999999999999999999999999887 679999999999997 57
Q ss_pred CEEecCChhhhhHHHHHHHH-HhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhc
Q 025639 150 DIVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228 (250)
Q Consensus 150 ~IIs~~sCtT~~la~~l~~L-~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvl 228 (250)
+||||+|||||||||++|+| ||+|||++++|||+|+||++|+++|+|+++|||++|++++||||++||++| ++++||
T Consensus 160 ~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAk--Av~~Vl 237 (361)
T PTZ00434 160 HVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAK--AVGMVI 237 (361)
T ss_pred cEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhh--hhceec
Confidence 89999999999999999999 799999999999999999999999999668999999999999999999999 999999
Q ss_pred cccCCceeEEEEeeceeccccC
Q 025639 229 IFYFFGLANSKISIIPYLTGSW 250 (250)
Q Consensus 229 p~l~~ki~~~~vr~VPv~~g~~ 250 (250)
|+|+||++++++| |||.+||.
T Consensus 238 P~L~GKl~G~a~R-VPt~nvS~ 258 (361)
T PTZ00434 238 PSTKGKLTGMSFR-VPTPDVSV 258 (361)
T ss_pred cccCCceeeEEEe-cccCcEeE
Confidence 9999999999999 99999983
No 2
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1e-79 Score=560.71 Aligned_cols=238 Identities=57% Similarity=0.908 Sum_probs=228.9
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
|++||||||||||||.++|++.+++++|+|+|||+ .++++++|||||||+||+|+ ++++.+++ .|.++|++|.++++
T Consensus 1 m~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~ 77 (331)
T PRK15425 1 MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAE 77 (331)
T ss_pred CceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcC-CcEEecCC-EEEECCeEEEEEEc
Confidence 56899999999999999999888888999999996 89999999999999999999 89999888 69999999999999
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEecCChhhhhHH
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLA 163 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d-~p~iV~gVN~~~~~~~~~IIs~~sCtT~~la 163 (250)
++|++++|+++|+|+||||||.|.++++++.|+++|||+|++|+|++| +|+||||||++.|+. ++||||||||||||+
T Consensus 78 ~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~La 156 (331)
T PRK15425 78 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLA 156 (331)
T ss_pred CChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999775 799999999999975 789999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhccccCCceeEEEEeec
Q 025639 164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKISII 243 (250)
Q Consensus 164 ~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~~vr~V 243 (250)
|++|+||++|||++++|||||++|++|+++|+++++|+|++|++++||||++||+++ +++||||+|+||++++|+| |
T Consensus 157 pvlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~--av~kIlP~L~gkl~g~avR-V 233 (331)
T PRK15425 157 PLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAK--AVGKVLPELNGKLTGMAFR-V 233 (331)
T ss_pred HHHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchH--HHHhhccccCCeEEEEEEE-e
Confidence 999999999999999999999999999999998768999999999999999999999 9999999999999999999 9
Q ss_pred eecccc
Q 025639 244 PYLTGS 249 (250)
Q Consensus 244 Pv~~g~ 249 (250)
||++||
T Consensus 234 Pv~~gs 239 (331)
T PRK15425 234 PTPNVS 239 (331)
T ss_pred cccCeE
Confidence 999997
No 3
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-79 Score=560.37 Aligned_cols=240 Identities=62% Similarity=0.966 Sum_probs=230.3
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
|++||||||||||||.++|++.+++++++|+|||++.++++++|||||||+||+|+ ++++.+++ .|.+||++|+++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~~~~~ 78 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLP-AEVSVTDG-FLMIGSKKVHVFFE 78 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCC-CcEEecCC-EEEECCeEEEEEeC
Confidence 66899999999999999999888888999999997799999999999999999999 89999888 69999999999999
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEecCChhhhhHH
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLA 163 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d-~p~iV~gVN~~~~~~~~~IIs~~sCtT~~la 163 (250)
+||+++||++.|+|+||||||.|+++++++.|+++|||+|++|+|.++ +|++|||||++.|+..++||||||||||||+
T Consensus 79 ~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~La 158 (337)
T PTZ00023 79 KDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLA 158 (337)
T ss_pred CChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHH
Confidence 999999999999999999999999999999999999999999998764 7999999999999876789999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEeeeccCCccccccCCC--CCCcccccccccccccCCCCCcchhhhhhhccccCCceeEEEEe
Q 025639 164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--MKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKIS 241 (250)
Q Consensus 164 ~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~--~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~~vr 241 (250)
|++|+||++|||+++.|||||++|.+|.++|+++ ++|||++|++++||||+++|++| +++||||+|++|++++|+|
T Consensus 159 p~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaak--av~kVlPeL~gkl~g~avR 236 (337)
T PTZ00023 159 PLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAK--AVGKVIPELNGKLTGMAFR 236 (337)
T ss_pred HHHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcch--hhhheecccCCcEEEEEEE
Confidence 9999999999999999999999999999999975 48999999999999999999999 9999999999999999999
Q ss_pred eceecccc
Q 025639 242 IIPYLTGS 249 (250)
Q Consensus 242 ~VPv~~g~ 249 (250)
|||++||
T Consensus 237 -VPt~~~s 243 (337)
T PTZ00023 237 -VPVPDVS 243 (337)
T ss_pred -ecccCeE
Confidence 9999997
No 4
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=1.1e-78 Score=567.10 Aligned_cols=239 Identities=46% Similarity=0.746 Sum_probs=227.9
Q ss_pred CceeEEEEcCChHHHHHHHHHHcC--CCceEEEeeCCCCChhHHhhhhccccccccCCCcceEE-eCCeeeEECCEEEEE
Q 025639 5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV-KDEKTLLFGEKPVAV 81 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~--~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~-~~~~~l~~~g~~i~v 81 (250)
|++||||||||||||.++|++.++ +++|||+|||+ .++++++|||||||+||+|+ ++++. +++ .|.++|+.|++
T Consensus 74 ~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~-~~v~~~~~~-~L~v~Gk~I~V 150 (442)
T PLN02237 74 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSMLGTFK-ADVKIVDDE-TISVDGKPIKV 150 (442)
T ss_pred ceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC-CCHHHHHHHHccccCCCCcC-CceEECCCC-EEEECCEEEEE
Confidence 779999999999999999998765 57999999997 89999999999999999999 89987 555 69999999999
Q ss_pred EecCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCC--CCeEEeecCccccCCC-CCEEecCChh
Q 025639 82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPE-LDIVSNASCT 158 (250)
Q Consensus 82 ~~~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d--~p~iV~gVN~~~~~~~-~~IIs~~sCt 158 (250)
+++++|++++|++.|+||||||||.|.++++++.|+++|||+|++|+|..| +|+||||||++.|++. ++||||||||
T Consensus 151 ~~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCT 230 (442)
T PLN02237 151 VSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCT 230 (442)
T ss_pred EEcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchH
Confidence 999899999999999999999999999999999999999999999999765 7999999999999875 7899999999
Q ss_pred hhhHHHHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhccccCCceeEE
Q 025639 159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANS 238 (250)
Q Consensus 159 T~~la~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~ 238 (250)
||||+|++|+|||+|||++++|||||++|++|+++|+++ +|||++|++++||||++||++| ++++|||+|+||+++.
T Consensus 231 TNcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h-~D~Rr~Raaa~nIIPtsTGAAk--Av~~VlP~L~GKl~g~ 307 (442)
T PLN02237 231 TNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAK--AVSLVLPQLKGKLNGI 307 (442)
T ss_pred HHHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCC-cccccccccccccccCCcchhh--hhceecccCCCceeeE
Confidence 999999999999999999999999999999999999986 8999999999999999999999 9999999999999999
Q ss_pred EEeeceeccccC
Q 025639 239 KISIIPYLTGSW 250 (250)
Q Consensus 239 ~vr~VPv~~g~~ 250 (250)
++| ||+.+||.
T Consensus 308 A~R-VPt~nvS~ 318 (442)
T PLN02237 308 ALR-VPTPNVSV 318 (442)
T ss_pred EEe-cccCCceE
Confidence 999 99999983
No 5
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=9.9e-78 Score=559.63 Aligned_cols=238 Identities=69% Similarity=1.066 Sum_probs=229.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEE-eCCeeeEECCEEEEEEecC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV-KDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~-~~~~~l~~~g~~i~v~~~~ 85 (250)
+||||||||||||.++|++.+++++++|+|||++.++++++|||||||+||+|+ ++++. +++ .|.++|++|++++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~-~~v~~~~~~-~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GTINVVDDS-TLEINGKQIKVTSKR 163 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCC-CcEEEccCC-EEEECCEEEEEEecC
Confidence 699999999999999999887667999999998899999999999999999999 99997 666 699999999999999
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEecCChhhhhHHHH
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPL 165 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d~p~iV~gVN~~~~~~~~~IIs~~sCtT~~la~~ 165 (250)
+|++++|++.|+||||||||.|+++++++.|+++||||||||+|++|+|+||||||++.|+..++||||||||||||+|+
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap~ 243 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPL 243 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888999999999999987678999999999999999
Q ss_pred HHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhccccCCceeEEEEeecee
Q 025639 166 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKISIIPY 245 (250)
Q Consensus 166 l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~~vr~VPv 245 (250)
+|+||++|||++++|||||++|++|+++|+++++|||++|++++||||+++|+++ +++||||+|+||++++|+| |||
T Consensus 244 lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaak--av~kVLP~L~gkl~gtaVR-VPv 320 (421)
T PLN02272 244 AKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK--AVGKVLPELNGKLTGMAFR-VPT 320 (421)
T ss_pred HHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccch--hhhhcccccCCcEEEEEEE-ecc
Confidence 9999999999999999999999999999998668999999999999999999999 9999999999999999999 999
Q ss_pred cccc
Q 025639 246 LTGS 249 (250)
Q Consensus 246 ~~g~ 249 (250)
++||
T Consensus 321 ~~gs 324 (421)
T PLN02272 321 PNVS 324 (421)
T ss_pred CceE
Confidence 9997
No 6
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=8.3e-78 Score=548.93 Aligned_cols=236 Identities=45% Similarity=0.727 Sum_probs=226.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcC--CCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 7 IKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~--~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
+||||||||||||.++|++.++ +++|+|+|||+ .++++++|||||||+||+|+ ++++.+++ .|.+||++|+++++
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~ 78 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT-SDPRTNAHLLKYDSMLGKLN-ADISADEN-SITVNGKTIKCVSD 78 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC-CCHHHHHHHHhhccCCCCCC-CcEEEcCC-EEEECCEEEEEEEc
Confidence 7999999999999999998876 57999999997 89999999999999999999 89999887 69999999999999
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCC--CCeEEeecCccccCC-CCCEEecCChhhhh
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKP-ELDIVSNASCTTNC 161 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d--~p~iV~gVN~~~~~~-~~~IIs~~sCtT~~ 161 (250)
+||+++||++.|+|+||||||.|+++++++.|+++|||+|++|+|++| +|++|||||++.|++ .++|||||||||||
T Consensus 79 ~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~ 158 (337)
T PRK07403 79 RNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNC 158 (337)
T ss_pred CCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHH
Confidence 999999999999999999999999999999999999999999999764 599999999999985 47899999999999
Q ss_pred HHHHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhccccCCceeEEEEe
Q 025639 162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKIS 241 (250)
Q Consensus 162 la~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~~vr 241 (250)
|+|++|+||++|||++++|||||++|++|+++|+++ +|||++|++++||||++||++| +++++||+|+||++++|+|
T Consensus 159 Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~-~d~r~~raaa~NiIPt~tGaak--av~~vlP~L~gki~g~avR 235 (337)
T PRK07403 159 LAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASH-RDLRRARAAAVNIVPTSTGAAK--AVALVIPELKGKLNGIALR 235 (337)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEeeecCCcccccccc-cccccccccccccccCCcchhh--hhhhcCcccCCcEEEEEEE
Confidence 999999999999999999999999999999999987 8999999999999999999999 9999999999999999999
Q ss_pred eceecccc
Q 025639 242 IIPYLTGS 249 (250)
Q Consensus 242 ~VPv~~g~ 249 (250)
|||+++|
T Consensus 236 -VPt~~vs 242 (337)
T PRK07403 236 -VPTPNVS 242 (337)
T ss_pred -eccCCcE
Confidence 9999997
No 7
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=3.1e-77 Score=553.63 Aligned_cols=238 Identities=45% Similarity=0.714 Sum_probs=227.8
Q ss_pred CceeEEEEcCChHHHHHHHHHHcC--CCceEEEeeCCCCChhHHhhhhccccccccCCCcceEE-eCCeeeEECCEEEEE
Q 025639 5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV-KDEKTLLFGEKPVAV 81 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~--~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~-~~~~~l~~~g~~i~v 81 (250)
|++||||||||||||.++|+|+++ +.+++++|||+ .++++++|||+|||+||+|+ ++++. +++ .|.+||++|++
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~-~~~~~~ayLl~yDS~hG~f~-~~v~~~~g~-~l~v~gk~I~v 135 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT-GGVKQASHLLKYDSTLGTFD-ADVKPVGDD-AISVDGKVIKV 135 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC-CCHHHHHHHHhhcccCCCcC-CcEEEecCC-EEEECCEEEEE
Confidence 778999999999999999999987 57999999997 89999999999999999999 88876 555 69999999999
Q ss_pred EecCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEecCChhhh
Q 025639 82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTN 160 (250)
Q Consensus 82 ~~~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d-~p~iV~gVN~~~~~~~~~IIs~~sCtT~ 160 (250)
++++||++++|++.|+||||||||.|.++++++.|+++|||+|++|+|+++ +|++|||||++.|++.++||||||||||
T Consensus 136 ~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn 215 (395)
T PLN03096 136 VSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTN 215 (395)
T ss_pred EEcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHH
Confidence 999999999999999999999999999999999999999999999999764 8999999999999877789999999999
Q ss_pred hHHHHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhccccCCceeEEEE
Q 025639 161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKI 240 (250)
Q Consensus 161 ~la~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~~v 240 (250)
||+|++|+|||+|||++++|||||++|++|+++|+++ +|+|++|++++||||++||++| +++||||+|+||++++|+
T Consensus 216 ~LAp~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~-~d~rr~Raaa~NiIPtsTGaak--av~kVlP~L~gkl~g~av 292 (395)
T PLN03096 216 CLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAK--AVALVLPNLKGKLNGIAL 292 (395)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEccccccccccCCC-CccccchhhhccccccCCCcch--hhhhcccccCCcEEEEEE
Confidence 9999999999999999999999999999999999987 8999999999999999999999 999999999999999999
Q ss_pred eeceecccc
Q 025639 241 SIIPYLTGS 249 (250)
Q Consensus 241 r~VPv~~g~ 249 (250)
| |||++||
T Consensus 293 R-VPv~~gs 300 (395)
T PLN03096 293 R-VPTPNVS 300 (395)
T ss_pred E-ccccceE
Confidence 9 9999997
No 8
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=1.4e-76 Score=542.54 Aligned_cols=244 Identities=83% Similarity=1.261 Sum_probs=231.6
Q ss_pred CCCCCceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCc-ceEEeCCeeeEECCEEE
Q 025639 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVKDEKTLLFGEKPV 79 (250)
Q Consensus 1 ~~~~m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~-~v~~~~~~~l~~~g~~i 79 (250)
|+.. ++||||||||||||..+|.+.+++++++++|||+..++++++|||||||+||+|+ + +++.++++.|.++|++|
T Consensus 1 ~~~~-~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~-~~~v~~~~g~~l~~~g~~i 78 (338)
T PLN02358 1 MADK-KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWK-HHELKVKDDKTLLFGEKPV 78 (338)
T ss_pred CCCC-ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcC-CCeEEECCCCEEEECCEEE
Confidence 4443 4899999999999999999988888999999998799999999999999999999 6 88884443699999999
Q ss_pred EEEecCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEecCChhh
Q 025639 80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT 159 (250)
Q Consensus 80 ~v~~~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d~p~iV~gVN~~~~~~~~~IIs~~sCtT 159 (250)
++++++||++++|++.|+||||||||.|.++++++.|+++|||+|++|+|++|+|+||||||++.|+..++|||||||||
T Consensus 79 ~v~~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTT 158 (338)
T PLN02358 79 TVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTT 158 (338)
T ss_pred EEEEcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchH
Confidence 99999999999999999999999999999999999999999999999999988999999999999987778999999999
Q ss_pred hhHHHHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhccccCCceeEEE
Q 025639 160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSK 239 (250)
Q Consensus 160 ~~la~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~~ 239 (250)
|||+|+||+||++|||++++|||||++|++|+++|+++++|+|++|++++||||+++|+++ +++||||+|+||++++|
T Consensus 159 n~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaak--a~~kIlP~l~gkl~g~a 236 (338)
T PLN02358 159 NCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK--AVGKVLPSLNGKLTGMS 236 (338)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhh--hhhhccccCCCcEEEEE
Confidence 9999999999999999999999999999999999998668999999999999999999999 99999999999999999
Q ss_pred Eeeceecccc
Q 025639 240 ISIIPYLTGS 249 (250)
Q Consensus 240 vr~VPv~~g~ 249 (250)
+| |||++||
T Consensus 237 vR-VPv~~gs 245 (338)
T PLN02358 237 FR-VPTVDVS 245 (338)
T ss_pred EE-eeEcCee
Confidence 99 9999997
No 9
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-76 Score=533.47 Aligned_cols=236 Identities=56% Similarity=0.865 Sum_probs=229.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC-CceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~-~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
+||||||||||||+++|++.+++ ++|+|+|||+ .+|+++||||+|||+||+|. ++++.+++ .+.++|+.|+++.++
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~-~~v~~~~~-~~~v~g~~I~v~~~~ 78 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFD-GEVEVKDD-ALVVNGKGIKVLAER 78 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCC-CcccccCC-eEEECCceEEEEecC
Confidence 79999999999999999999998 7999999998 89999999999999999999 89988777 699999999999999
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHC-CCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEecCChhhhhHH
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG-GAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLA 163 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~-Gak~vvis~~s~d-~p~iV~gVN~~~~~~~~~IIs~~sCtT~~la 163 (250)
+|+++||+++++|+|+||||.|.++|++++|+++ |||||++|+|+++ ++++|+|||++.|+..+.||||+|||||||+
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLa 158 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLA 158 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhH
Confidence 9999999999999999999999999999999998 5999999999987 9999999999999988999999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhccccCCceeEEEEeec
Q 025639 164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKISII 243 (250)
Q Consensus 164 ~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~~vr~V 243 (250)
|++|+|+|+|||++++|||+|++|++|+++|+|| ++|||+|+++.||||++||++| ++++|||+|+||++++++| |
T Consensus 159 p~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph-~~~rr~raa~~niIp~sTgaAk--av~~VlP~L~gKl~g~A~R-V 234 (335)
T COG0057 159 PVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAK--AVGLVLPELKGKLTGMAIR-V 234 (335)
T ss_pred HHHHHHHHhcCeeEEEEEEEEcccCCCccccCcc-cchhhhccccCCCCcCCCcchh--hhhhhCcccCCceeeEEEE-e
Confidence 9999999999999999999999999999999998 7899999999999999999999 9999999999999999999 9
Q ss_pred eecccc
Q 025639 244 PYLTGS 249 (250)
Q Consensus 244 Pv~~g~ 249 (250)
|++++|
T Consensus 235 Pt~~vs 240 (335)
T COG0057 235 PTPNVS 240 (335)
T ss_pred cCCCcE
Confidence 999998
No 10
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.8e-76 Score=540.82 Aligned_cols=238 Identities=43% Similarity=0.741 Sum_probs=227.6
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
|++||||||||||||.++|++.+++++|+|+|||+ .++++++|||||||+||+|+ ++++.+++ .|.+||++|+++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~-~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~v~g~~I~v~~~ 77 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFD-GTVEAFED-HLLVDGKKIRLLNN 77 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhcCCcEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEEc
Confidence 77899999999999999999888888999999997 89999999999999999999 89999887 69999999999999
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCC-CCeEEeecCccccCC-CCCEEecCChhhhhH
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCL 162 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d-~p~iV~gVN~~~~~~-~~~IIs~~sCtT~~l 162 (250)
+||+++||++.++||||||||.|.++++++.|+++|||+|++|+|+.| ++++|+|||++.|++ .++||||||||||||
T Consensus 78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~L 157 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCL 157 (343)
T ss_pred CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHH
Confidence 999999999999999999999999999999999999999999999765 456799999999987 478999999999999
Q ss_pred HHHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhccccCCceeEEEEee
Q 025639 163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKISI 242 (250)
Q Consensus 163 a~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~~vr~ 242 (250)
+|++|+||++|||++++|||||++|++|+++|+++ +|||++|++++||||++||+++ ++.++||+|+||++++|+|
T Consensus 158 ap~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~-~d~rr~R~a~~niiPtstgaa~--ai~~viP~l~gkl~g~avR- 233 (343)
T PRK07729 158 APVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAK--ALAKVLPHLNGKLHGMALR- 233 (343)
T ss_pred HHHHHHHHHhcCeeEEEEEEEecccCcccccccch-hhhhcccccccceecCCCcchh--hHHHhccccCCeEEEEEEE-
Confidence 99999999999999999999999999999999986 8999999999999999999999 9999999999999999999
Q ss_pred ceecccc
Q 025639 243 IPYLTGS 249 (250)
Q Consensus 243 VPv~~g~ 249 (250)
|||++||
T Consensus 234 VPt~~~s 240 (343)
T PRK07729 234 VPTPNVS 240 (343)
T ss_pred eeecCeE
Confidence 9999997
No 11
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-76 Score=539.08 Aligned_cols=240 Identities=28% Similarity=0.509 Sum_probs=227.2
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECC-EEEEEEe
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE-KPVAVFG 83 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g-~~i~v~~ 83 (250)
|++||||||||||||.++|++.+++++|+|+|||+..++++++|||||||+||+|++.+++.+++ .|.+|| ++|.+++
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~-~l~i~g~~~i~~~~ 79 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGE-QIVLNGTQKIRVSA 79 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCC-EEecCCCeEEEEEe
Confidence 66899999999999999999888888999999997689999999999999999995258988887 699998 8999999
Q ss_pred cCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEecCChhhhhHH
Q 025639 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLA 163 (250)
Q Consensus 84 ~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d~p~iV~gVN~~~~~~~~~IIs~~sCtT~~la 163 (250)
+++|++++|+++++|+||||||.|.+.+.+..|+++|||||+|++|++|+|++|||||++.|++.++||||||||||||+
T Consensus 80 ~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~La 159 (342)
T PTZ00353 80 KHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALA 159 (342)
T ss_pred cCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877789999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEeeeccCCccccccCCC--CCCcccccccccccccCCCCCcchhhhhhhccccCCceeEEEEe
Q 025639 164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--MKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKIS 241 (250)
Q Consensus 164 ~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~--~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~~vr 241 (250)
|++|+|||+|||++++|||||+|+ +|...|+|+ ++|||++|.+++||||+.||+++ +++||||+|+||++++|+|
T Consensus 160 pvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaak--av~kVlP~L~gkl~g~avR 236 (342)
T PTZ00353 160 PVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAE--TVCKLLPHLVGRISGSAFQ 236 (342)
T ss_pred HHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchh--hhhhhccccCCcEEEEEEE
Confidence 999999999999999999999997 677777765 38999999999999999999999 9999999999999999999
Q ss_pred eceecccc
Q 025639 242 IIPYLTGS 249 (250)
Q Consensus 242 ~VPv~~g~ 249 (250)
|||++||
T Consensus 237 -VPt~~vs 243 (342)
T PTZ00353 237 -VPVKKGC 243 (342)
T ss_pred -ccccCeE
Confidence 9999998
No 12
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=6.9e-76 Score=535.90 Aligned_cols=236 Identities=54% Similarity=0.874 Sum_probs=225.6
Q ss_pred eEEEEcCChHHHHHHHHHHcC--CCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCE-EEEEEec
Q 025639 8 KIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK-PVAVFGF 84 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~--~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~-~i~v~~~ 84 (250)
||||||||||||.++|++.++ +++++|+|||+ .++++++|||||||+||+|+ ++++.++++.|.++|+ .|.++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFE-GEVTADEDKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCC-CcEEecCCceEEECCeEEEEEEec
Confidence 799999999999999998877 47999999997 89999999999999999999 8999877613999999 9999999
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEecCChhhhhHH
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLA 163 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d-~p~iV~gVN~~~~~~~~~IIs~~sCtT~~la 163 (250)
++|++++|++.|+||||||||.|+++++++.|+++|||+|++|+|+.| +||+|||||++.|+.+++||||||||||||+
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La 158 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA 158 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence 999999999999999999999999999999999999999999999877 7999999999999877789999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhccccCCceeEEEEeec
Q 025639 164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKISII 243 (250)
Q Consensus 164 ~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~~vr~V 243 (250)
|+||+||++|||++++|||||++|++|+++|+++ +|||++|++++||||+++|+++ +++||||+|++|++++|+| |
T Consensus 159 p~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tg~ak--~~~kvlP~L~gkv~~~avR-V 234 (327)
T TIGR01534 159 PLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNIIPTSTGAAK--AIGKVLPELAGKLTGMAIR-V 234 (327)
T ss_pred HHHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeeeeccCCChHH--HHhhccccCCCeEEEEEEE-e
Confidence 9999999999999999999999999999999986 7899999999999999999999 9999999999999999999 9
Q ss_pred eecccc
Q 025639 244 PYLTGS 249 (250)
Q Consensus 244 Pv~~g~ 249 (250)
||++||
T Consensus 235 Pv~~gs 240 (327)
T TIGR01534 235 PTPNVS 240 (327)
T ss_pred cccCeE
Confidence 999997
No 13
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=5.7e-75 Score=531.21 Aligned_cols=237 Identities=38% Similarity=0.680 Sum_probs=227.3
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
|++||||||||||||.++|++.++++++++++||+..++++++|||||||+||+|+ ++++.+++ .|.+||++|+++++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~-~~v~~~g~-~l~~~g~~i~v~~~ 78 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWH-HEVTAEGD-AIVINGKRIRTTQN 78 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCC-CCEEEcCC-EEEECCEEEEEEec
Confidence 56899999999999999999998888999999997799999999999999999999 89999887 69999999999999
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCC--CCeEEeecCccccCC-CCCEEecCChhhhh
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKP-ELDIVSNASCTTNC 161 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d--~p~iV~gVN~~~~~~-~~~IIs~~sCtT~~ 161 (250)
++|++++|+ ++|+||||||.|.++++++.|+++|||+|++|+|+.| +|++|||||++.|++ .++|||||||||||
T Consensus 79 ~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~ 156 (334)
T PRK08955 79 KAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNC 156 (334)
T ss_pred CChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHH
Confidence 999999997 9999999999999999999999999999999999664 699999999999987 47899999999999
Q ss_pred HHHHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhccccCCceeEEEEe
Q 025639 162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKIS 241 (250)
Q Consensus 162 la~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~~vr 241 (250)
|+|+||+||++|||+++.|||||++|.+|+++|+++ +|+|++|++++||||+.+|+++ +++||||+|+||++++|+|
T Consensus 157 Lap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tGaa~--a~~kvlP~L~gkl~~~avR 233 (334)
T PRK08955 157 LAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH-KDLRRARACGMSLIPTTTGSAT--AITEIFPELKGKLNGHAVR 233 (334)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC-cccccchhheeccccccCCCcc--ccceEccccCCcEEEEEEE
Confidence 999999999999999999999999999999999987 7889999999999999999999 9999999999999999999
Q ss_pred eceecccc
Q 025639 242 IIPYLTGS 249 (250)
Q Consensus 242 ~VPv~~g~ 249 (250)
|||++||
T Consensus 234 -VPv~~gs 240 (334)
T PRK08955 234 -VPLANAS 240 (334)
T ss_pred -eccCCeE
Confidence 9999997
No 14
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-74 Score=528.20 Aligned_cols=236 Identities=35% Similarity=0.639 Sum_probs=226.0
Q ss_pred eeEEEEcCChHHHHHHHHHHcC---CCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEe
Q 025639 7 IKIGINGFGRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~---~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~ 83 (250)
+||||||||||||.++|+|+++ +++++++|||+ .++++++|||||||+||+|+ ++++.+++ .|.+||++|.+++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~-~~~~~~ayll~ydS~hg~~~-~~v~~~~~-~l~v~g~~i~v~~ 78 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL-ADAEGMAHLLKYDTSHGRFA-WDVRQERD-QLFVGDDAIRLLH 78 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEE
Confidence 6999999999999999999985 46999999997 89999999999999999999 99999888 6999999999999
Q ss_pred cCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-C-CCeEEeecCccccCCCCCEEecCChhhhh
Q 025639 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-D-APMFVVGVNEKEYKPELDIVSNASCTTNC 161 (250)
Q Consensus 84 ~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-d-~p~iV~gVN~~~~~~~~~IIs~~sCtT~~ 161 (250)
+++|++++|++.++|+||||||.|.++++++.|+++|||+|++|+|++ | .+++|||||++.|++.++|||||||||||
T Consensus 79 ~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~ 158 (336)
T PRK13535 79 ERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNC 158 (336)
T ss_pred cCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHH
Confidence 999999999999999999999999999999999999999999999976 5 45999999999998777899999999999
Q ss_pred HHHHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhccccCCceeEEEEe
Q 025639 162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKIS 241 (250)
Q Consensus 162 la~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~~vr 241 (250)
|+|++|+||++|||++++|||||++|++|+++|+++ +|+|++|.+++||||+.+|+++ +++||||+|++|++++|+|
T Consensus 159 Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~-~d~rr~r~~a~NiIP~~tgaa~--a~~kilP~l~gkv~~~avR 235 (336)
T PRK13535 159 IIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAA--GITRIFPQFNDRFEAISVR 235 (336)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchh-hccccccEeeeccccCccHHHh--hhhhcccCCCCcEEEEEEE
Confidence 999999999999999999999999999999999986 8999999999999999999999 9999999999999999999
Q ss_pred eceecccc
Q 025639 242 IIPYLTGS 249 (250)
Q Consensus 242 ~VPv~~g~ 249 (250)
|||++||
T Consensus 236 -VPv~~gs 242 (336)
T PRK13535 236 -VPTINVT 242 (336)
T ss_pred -eCccCcE
Confidence 9999997
No 15
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=9.8e-74 Score=535.15 Aligned_cols=237 Identities=35% Similarity=0.547 Sum_probs=225.8
Q ss_pred ceeEEEEcCChHHHHHHHHHHcC----CCceEEEee----CCCCChhHHhhhhccccccccCCCcceEEe--CCeeeEEC
Q 025639 6 KIKIGINGFGRIGRLVARVALQR----DDVELVAVN----DPFISTDYMTYMFKYDSVHGQWKHNELKVK--DEKTLLFG 75 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~----~~~~vvain----d~~~~~~~~a~ll~ydS~~G~~~~~~v~~~--~~~~l~~~ 75 (250)
+.||||||||||||.++|++.++ +++++|||| +. .++++++|||+|||+||+|+ ++++.+ ++ .|.+|
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~-~d~~~~ayLLkyDSvhG~f~-~~v~~~~~~~-~liin 203 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSE-GDLEKRASLLRRDSVHGPFN-GTITVDEENN-AIIAN 203 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCC-CCHHHHHHHhhhhcCCCCCC-CceEeecCCC-EEEEC
Confidence 46999999999999999998876 479999995 55 79999999999999999999 899885 55 69999
Q ss_pred CEEEEEEecCCCCCCCcccCCcc--EEEeecCCCCCHHHHHHHHH-CCCCEEEEeCCCCC-CCeEEeecCccccCCCCCE
Q 025639 76 EKPVAVFGFRNPEEIPWAKTGAE--YVVESTGVFTDKDKAAAHLK-GGAKKVVISAPSKD-APMFVVGVNEKEYKPELDI 151 (250)
Q Consensus 76 g~~i~v~~~~~p~~i~w~~~~vd--iV~~~tg~~~~~~~a~~~~~-~Gak~vvis~~s~d-~p~iV~gVN~~~~~~~~~I 151 (250)
|+.|+++++++|+++||++.|+| +|+||||.|.+++.+..|++ +||||||||+|++| +|+||||||++.|++.++|
T Consensus 204 g~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~I 283 (477)
T PRK08289 204 GNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKI 283 (477)
T ss_pred CEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCE
Confidence 99999999999999999999999 99999999999999999999 89999999999886 8999999999999877789
Q ss_pred EecCChhhhhHHHHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhcccc
Q 025639 152 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFY 231 (250)
Q Consensus 152 Is~~sCtT~~la~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l 231 (250)
|||||||||||+|++|+||++|||++++|||||++|++|+++|+++ +++|++|++++||||+.||++| +++|+||+|
T Consensus 284 ISnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~h-kd~RrgRaaa~NIIptsTGAAk--Av~kVLP~L 360 (477)
T PRK08289 284 VSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYH-KGDRRGRSAPLNMVITETGAAK--AVAKALPEL 360 (477)
T ss_pred EECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhh-hcCcccceeeeeeEecCCChhh--hhhhccccc
Confidence 9999999999999999999999999999999999999999999987 7899999999999999999999 999999999
Q ss_pred CCceeEEEEeeceecccc
Q 025639 232 FFGLANSKISIIPYLTGS 249 (250)
Q Consensus 232 ~~ki~~~~vr~VPv~~g~ 249 (250)
+||++++|+| |||++||
T Consensus 361 ~GKltg~avR-VPt~nvS 377 (477)
T PRK08289 361 AGKLTGNAIR-VPTPNVS 377 (477)
T ss_pred CCcEEEEEEE-eccccEE
Confidence 9999999999 9999998
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=4.9e-71 Score=504.50 Aligned_cols=235 Identities=36% Similarity=0.638 Sum_probs=224.0
Q ss_pred eEEEEcCChHHHHHHHHHHcCC---CceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 8 KIGINGFGRIGRLVARVALQRD---DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~---~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
||||||||||||.++|+|.+++ +|++++|||+ .++++++|||||||+||+|+ ++++.+++ .|.++|+.|+++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~i~v~~~ 77 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL-ADQASMAHLLRYDTSHGRFP-GEVKVDGD-CLHVNGDCIRVLHS 77 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC-CCHHHHHHHHhhCccCCCCC-CcEEEeCC-EEEECCeEEEEEEc
Confidence 6999999999999999999864 6999999997 89999999999999999999 99999988 69999999999999
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-C-CCeEEeecCccccCCCCCEEecCChhhhhH
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-D-APMFVVGVNEKEYKPELDIVSNASCTTNCL 162 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-d-~p~iV~gVN~~~~~~~~~IIs~~sCtT~~l 162 (250)
++|++++|++.++|+||||||.|.++++++.|+++||++|++|+|+. | .+++|||||++.|++.++||||||||||||
T Consensus 78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~l 157 (325)
T TIGR01532 78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCI 157 (325)
T ss_pred CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999976 4 458999999999987778999999999999
Q ss_pred HHHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhccccCCceeEEEEee
Q 025639 163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKISI 242 (250)
Q Consensus 163 a~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~~vr~ 242 (250)
+|++|+||++|||+++.|||||++|++|+++|+++ +++|++|.+++||||+.+|+++ +++||||+|+||++++|+|
T Consensus 158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~-~d~r~~r~a~~NiIP~~t~~a~--a~~kilP~L~gkl~~~avR- 233 (325)
T TIGR01532 158 VPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYH-HDLRRTRAASQSIIPVDTKLAR--GIERLFPEFAGRFEAIAVR- 233 (325)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCccccccch-hhccccchHhhCeeeCCccHHH--HHHHhCcccCCeEEEEEEE-
Confidence 99999999999999999999999999999999986 8999999999999999999999 9999999999999999999
Q ss_pred ceecccc
Q 025639 243 IPYLTGS 249 (250)
Q Consensus 243 VPv~~g~ 249 (250)
|||++||
T Consensus 234 VPv~~~s 240 (325)
T TIGR01532 234 VPTVNVT 240 (325)
T ss_pred ecccCcE
Confidence 9999997
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-60 Score=417.69 Aligned_cols=221 Identities=61% Similarity=0.985 Sum_probs=211.9
Q ss_pred HHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCCCCCCCcccCC
Q 025639 17 IGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTG 96 (250)
Q Consensus 17 IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~p~~i~w~~~~ 96 (250)
|||.++ + +++++++++||++.++++++|+++|||+||+|+ ++++.+++ .+.++|++|.++++++|..++|.+.+
T Consensus 1 ig~~~~---~-~~~v~vv~indpfi~~~~~~y~~kydsthG~f~-g~~k~~~~-~~i~~G~~i~~~~~~~p~~i~w~~~g 74 (285)
T KOG0657|consen 1 IGRLVL---Q-RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFH-GTVKAENF-KLIINGNPITIFQFRDPAKIPWGAKG 74 (285)
T ss_pred CCcccc---c-cCCcccccccCcccccccccccccccccCCccc-cceeecCC-ceeecCceEEeecccCcccCcccccc
Confidence 466666 2 556999999999999999999999999999999 99999988 58889999999999999999999999
Q ss_pred ccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEecCChhhhhHHHHHHHHHhhcCee
Q 025639 97 AEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV 176 (250)
Q Consensus 97 vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d~p~iV~gVN~~~~~~~~~IIs~~sCtT~~la~~l~~L~~~fgI~ 176 (250)
+|+|+|+||.|++.+.+..|+++|||+++||+||+|.|++|+|||+++|+++..||||+|||||||+|..|+|||+|||.
T Consensus 75 ~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~ 154 (285)
T KOG0657|consen 75 ADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIM 154 (285)
T ss_pred ceeEeeccccccccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccc
Confidence 99999999999999999999999999999999999999999999999999876799999999999999999999999999
Q ss_pred EEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhccccCCceeEEEEeeceec
Q 025639 177 EGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKISIIPYL 246 (250)
Q Consensus 177 ~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~~vr~VPv~ 246 (250)
+++|||+|+++++|+++|||++++||.+|.+.+||||.+||++| +++|+||+|+||+++++.| ||+.
T Consensus 155 EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAak--AVgKvipeLngKLtGMAf~-Vpt~ 221 (285)
T KOG0657|consen 155 EGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAK--AVGKVIPELNGKLTGMAFR-VPTP 221 (285)
T ss_pred cccccceeeeccccccccCcccccccccchhhhccccccccHHH--HHHHHhHHhhCccccceec-CCcc
Confidence 99999999999999999999999999999999999999999999 9999999999999999999 9998
No 18
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=3.8e-49 Score=324.37 Aligned_cols=149 Identities=56% Similarity=0.988 Sum_probs=140.0
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
|||||||||||||+++|++..+++||+++|||+..++++++|||||||+||+|+ +.++.+++ .|.++|++|+++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~-~~v~~~~~-~l~v~G~~I~~~~~~d 78 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFP-GDVEVDDD-GLIVNGKKIKVTEERD 78 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGS-SHEEEETT-EEEETTEEEEEEHTSS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcccccccee-cccccccc-eeEeecccccchhhhh
Confidence 699999999999999999999999999999999669999999999999999999 89999888 6999999999999999
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCC--CCeEEeecCccccCCCCCEEecCCh
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASC 157 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d--~p~iV~gVN~~~~~~~~~IIs~~sC 157 (250)
|+++||++.++|+|+||||.|.+++.++.|+++||||||+|+|++| +|+||+|||++.|+++++|||++||
T Consensus 79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred hcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 9999999999999999999999999999999999999999999986 8999999999999987799999999
No 19
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=8.6e-48 Score=351.53 Aligned_cols=208 Identities=21% Similarity=0.235 Sum_probs=180.5
Q ss_pred EEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChh---HHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTD---YMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 9 VaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~---~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
|||||||+|||.++|++.+++++++|+|||. +++ +++|+++|||.|+.+. ..++++++ .+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~--~~~~~a~lA~~lgyds~~~~~~-~~~~~~~~-~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT--SPDFEAYRAKELGIPVYAASEE-FIPRFEEA-GIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecC--ChHHHHHHHHHhCCCEEeecCC-cceEeccC-ceEecCC--------
Confidence 6999999999999999988889999999995 777 7888888999984333 35667665 4766653
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCC--CCeEEeecCccccCCCCCEEecCChhhhhHH
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASCTTNCLA 163 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d--~p~iV~gVN~~~~~~~~~IIs~~sCtT~~la 163 (250)
++++. .++|+|++|||.+.+++.++.|++.|+|+|++++|++| +++||+|+|++.|.+.+ +|||+|||||||+
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~La 143 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLV 143 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHH
Confidence 44443 26999999999999999999999999999999999987 47899999999998644 9999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccC-CC---CCcchhhhhhhccccCCceeEEE
Q 025639 164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS-ST---GAAKVHSVGRVIIFYFFGLANSK 239 (250)
Q Consensus 164 ~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~-~~---g~~k~~~~~kvlp~l~~ki~~~~ 239 (250)
|++++|+++|||++++|||+|+ +++|+ |+|++| ++||||+ .+ +.++ ++++|||+|+ +++.+
T Consensus 144 p~~~~L~~~fGI~~~~~Ttvh~-t~dq~--------d~rrgr--~~~IiP~~~t~ps~~a~--av~~VlP~L~--i~g~A 208 (333)
T TIGR01546 144 RTLNAINDYSKVDKVRAVMVRR-AADPN--------DVKKGP--INAIVPDPVTVPSHHGP--DVQTVIPNLN--IETMA 208 (333)
T ss_pred HHHHHHHHhcCeEEEEEEEEee-cCChh--------hhccCc--hhceEeCCCCCCCchHH--HHHHcCCCCC--ccEEE
Confidence 9999999999999999999997 88763 678888 6999999 33 4478 9999999996 99999
Q ss_pred Eeeceecccc
Q 025639 240 ISIIPYLTGS 249 (250)
Q Consensus 240 vr~VPv~~g~ 249 (250)
+| ||++++|
T Consensus 209 vr-VPt~~vs 217 (333)
T TIGR01546 209 FV-VPTTLMH 217 (333)
T ss_pred EE-eCCCCcE
Confidence 99 9999987
No 20
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=5.8e-44 Score=293.39 Aligned_cols=148 Identities=54% Similarity=0.921 Sum_probs=141.0
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
+||||+|+|++||.++|++.+++++++++++|+ .++++++|||+|||+||+|. .+++.+++ .|.+||+.++++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~-~~v~~~~~-~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFP-GEVEVDED-GLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCC-CcEEEeCC-EEEECCEEEEEEecCC
Confidence 589999999999999999998888999999997 89999999999999999999 88998887 6999999999999999
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEecCCh
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASC 157 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d-~p~iV~gVN~~~~~~~~~IIs~~sC 157 (250)
|++++|++.|+|+|+||||.|.+++.++.|+++||||||+|+|++| +++||+|||++.|+++++||||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 9999999999999999999999999999999999999999999987 4699999999999987779999999
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=9.8e-43 Score=320.78 Aligned_cols=208 Identities=24% Similarity=0.287 Sum_probs=168.6
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhcc---ccccccCCCcceE-EeCCeeeEECCEEEEEE
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKY---DSVHGQWKHNELK-VKDEKTLLFGEKPVAVF 82 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~y---dS~~G~~~~~~v~-~~~~~~l~~~g~~i~v~ 82 (250)
+||||||+|+|||++++++.++++++|++++|. ++++.+|+++| | .||+++ .... +.+ ..+.+.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~--~~~~~~~la~~~G~~-~~~~~~-~~~~~~~~--------~~i~V~ 69 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT--KPDYEARVAVEKGYP-LYVADP-EREKAFEE--------AGIPVA 69 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC--ChHHHHHHHHhcCCC-ccccCc-cccccccC--------CceEEc
Confidence 799999999999999999999999999999996 58999999884 4 566655 3333 222 223332
Q ss_pred ecCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-CCC--eEEeecCccccCCCCCEEecCChhh
Q 025639 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAP--MFVVGVNEKEYKPELDIVSNASCTT 159 (250)
Q Consensus 83 ~~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-d~p--~iV~gVN~~~~~~~~~IIs~~sCtT 159 (250)
. +++++. .++|+||||||.+.+.+.++.|+++| ++||+++|.. ++| .||||||++.+.+ .++|+||||||
T Consensus 70 ~--~~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~-~~~v~~~sCtT 142 (341)
T PRK04207 70 G--TIEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALG-KDYVRVVSCNT 142 (341)
T ss_pred C--ChhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCC-CCcEEccChHH
Confidence 1 233332 27999999999999999999999999 6788888754 343 4799999999975 34899999999
Q ss_pred hhHHHHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCC----CCCcchhhhhhhccccCCce
Q 025639 160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS----TGAAKVHSVGRVIIFYFFGL 235 (250)
Q Consensus 160 ~~la~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~----~g~~k~~~~~kvlp~l~~ki 235 (250)
|||+|+|++|+++|||++++|||||++|+ + +++ .|++.+||+|.. +...+ +++||+|+|+ +
T Consensus 143 ~~l~~~l~~L~~~fgI~~~~vTtv~a~td-------~--~~~--~r~~~~niip~p~~~~~~~g~--~v~~vlp~l~--i 207 (341)
T PRK04207 143 TGLCRTLCALDRAFGVKKVRATLVRRAAD-------P--KEV--KRGPINAIVPDPVTVPSHHGP--DVKTVLPDLD--I 207 (341)
T ss_pred HHHHHHHHHHHHhcCceEEEEEEEEcCCC-------c--chh--hHHHhcCcCCCCCCCCCCchh--HHHhhCCCCc--e
Confidence 99999999999999999999999999873 3 344 378999999852 23346 8999999994 9
Q ss_pred eEEEEeeceecccc
Q 025639 236 ANSKISIIPYLTGS 249 (250)
Q Consensus 236 ~~~~vr~VPv~~g~ 249 (250)
+++|+| |||++|+
T Consensus 208 ~~~avr-VPv~~gh 220 (341)
T PRK04207 208 TTMAVK-VPTTLMH 220 (341)
T ss_pred EEEEEE-cCCCCce
Confidence 999999 9999997
No 22
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-42 Score=314.24 Aligned_cols=205 Identities=19% Similarity=0.298 Sum_probs=170.3
Q ss_pred ceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 6 KIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 6 ~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
.++||| | ||.|||.++++|++++ |+ +.++ ++| +| ..++.+. .+.|+|+.+.|.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~-fp---v~~l--------~l~--~s--------~~~s~gk-~i~f~g~~~~V~-- 56 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSD-LE---IEQI--------SIV--EI--------EPFGEEQ-GIRFNNKAVEQI-- 56 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcC-Cc---hhhe--------eec--cc--------ccccCCC-EEEECCEEEEEE--
Confidence 369999 9 9999999999999996 88 6766 666 22 1234445 699999999996
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----CCCeEEeecCccccCC--CCCEEecCCh
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELDIVSNASC 157 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~~~--~~~IIs~~sC 157 (250)
++++.+|+ ++|+||+ +|...++++++.+.++|| +|||++|+ |+||+|||||++.+.. .++||+||||
T Consensus 57 -~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNC 130 (322)
T PRK06901 57 -APEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDP 130 (322)
T ss_pred -ECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcH
Confidence 35556675 8999999 988899999999999999 99999985 6999999999999875 3689999999
Q ss_pred hhhhHHHHHHHHHhhcCeeEEEEEeeeccCCccc------------cccCCCCCCcccccccccccccCCC-CCcchhhh
Q 025639 158 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSMKDWRGGRAASFNIIPSST-GAAKVHSV 224 (250)
Q Consensus 158 tT~~la~~l~~L~~~fgI~~~~vtTiha~s~~q~------------~~D~~~~~d~~~~r~~~~NiiP~~~-g~~k~~~~ 224 (250)
||.+|+++|+|||+.|||+++.+|||||+||+.+ ++++.+.+ ...++++||+||+.. |.. +|+
T Consensus 131 sTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~~--~~~~~iAFNviP~ig~~m~--~Et 206 (322)
T PRK06901 131 QVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLD--EEEQRLAFDVFPANAQNLE--LQL 206 (322)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCCC--CCceeeeccccccCCccHH--HHH
Confidence 9999999999999999999999999999999742 22331111 124899999999985 422 699
Q ss_pred hhhccccCCceeEEEEeeceeccc
Q 025639 225 GRVIIFYFFGLANSKISIIPYLTG 248 (250)
Q Consensus 225 ~kvlp~l~~ki~~~~vr~VPv~~g 248 (250)
+||||+| .++++||+| |||++|
T Consensus 207 rKIl~~l-~~VsaTcVR-VPV~~G 228 (322)
T PRK06901 207 QKIFPQL-ENVTFHSIQ-VPVFYG 228 (322)
T ss_pred HHHhCCc-ccEEEEEEE-cceecc
Confidence 9999776 379999999 999998
No 23
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.7e-41 Score=302.59 Aligned_cols=210 Identities=22% Similarity=0.344 Sum_probs=167.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHcC-CCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 7 IKIGING-FGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~-~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
+||||+| ||.||+.+++.|.++ ++|+.+. ++ .+.++.|.+.+.+.|+.+.+.+.
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~-------------~~-----------AS~rSaG~~~~~f~~~~~~v~~~ 57 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELV-------------LL-----------ASARSAGKKYIEFGGKSIGVPED 57 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEE-------------EE-----------ecccccCCccccccCccccCccc
Confidence 6999999 999999999999995 3444322 22 22334444237777776655421
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----CCCeEEeecCccccCC--CCC-EEecCC
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELD-IVSNAS 156 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~~~--~~~-IIs~~s 156 (250)
-.+...|. ++||||+|.|...++++++++.++|+ +||||+|+ |+|++|||||++++.. .++ ||+|||
T Consensus 58 -~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpN 132 (334)
T COG0136 58 -AADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPN 132 (334)
T ss_pred -cccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECCC
Confidence 14556676 89999999999999999999999998 99999985 7999999999999765 234 999999
Q ss_pred hhhhhHHHHHHHHHhhcCeeEEEEEeeeccCCccc-ccc-----------CCCCCCcccccccccccccCCCC-----Cc
Q 025639 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVD-----------GPSMKDWRGGRAASFNIIPSSTG-----AA 219 (250)
Q Consensus 157 CtT~~la~~l~~L~~~fgI~~~~vtTiha~s~~q~-~~D-----------~~~~~d~~~~r~~~~NiiP~~~g-----~~ 219 (250)
|||.+|+++|+||+++|+|+++.+|||||+||+.. .++ +.+ -.-.+++++||+||++.+ ++
T Consensus 133 Cst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~--i~~~~~~iAfNviP~I~~~~~ng~t 210 (334)
T COG0136 133 CSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIP--ILPIGYPLAFNVIPHIDGFLDNGYT 210 (334)
T ss_pred hHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCcc--cccccccccccccccCCccccCCcc
Confidence 99999999999999999999999999999999854 221 111 111268999999999854 65
Q ss_pred c----h-hhhhhhccccCCceeEEEEeeceeccc
Q 025639 220 K----V-HSVGRVIIFYFFGLANSKISIIPYLTG 248 (250)
Q Consensus 220 k----~-~~~~kvlp~l~~ki~~~~vr~VPv~~g 248 (250)
| + +|++|||++...++++||+| |||++|
T Consensus 211 ~EE~K~~~Et~KIlg~~~~~VsatcvR-VPV~~G 243 (334)
T COG0136 211 KEEWKIEAETRKILGDPDIKVSATCVR-VPVFYG 243 (334)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEEE-cceecc
Confidence 5 2 89999998777899999999 999998
No 24
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=6.4e-40 Score=302.40 Aligned_cols=213 Identities=14% Similarity=0.126 Sum_probs=168.6
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
+||||+| ||.|||.++++|+++++|+ +.++ +++ ++-++.+. .+.++|+.+.+..
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp---~~~~--------~~~-----------ss~~s~g~-~~~f~~~~~~v~~-- 55 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFD---AIRP--------VFF-----------STSQLGQA-APSFGGTTGTLQD-- 55 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCc---cccE--------EEE-----------EchhhCCC-cCCCCCCcceEEc--
Confidence 4899999 9999999999999666798 4443 343 12234444 5778888876653
Q ss_pred CCCCC-CcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----CCCeEEeecCccccCCC--CCE--EecC
Q 025639 86 NPEEI-PWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE--LDI--VSNA 155 (250)
Q Consensus 86 ~p~~i-~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~~~~--~~I--Is~~ 155 (250)
.++. .|. ++|+||+|+|...++++++.+.++|+..+|||++|+ |+||+||+||++.+..+ +.| |+||
T Consensus 56 -~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ianP 132 (366)
T TIGR01745 56 -AFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVGG 132 (366)
T ss_pred -Cccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEECc
Confidence 3343 454 899999999999999999999999943489999985 69999999999988752 567 8999
Q ss_pred ChhhhhHHHHHHHHHhhcCeeEEEEEeeeccCCccc------------cccC--------C-----------------CC
Q 025639 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDG--------P-----------------SM 198 (250)
Q Consensus 156 sCtT~~la~~l~~L~~~fgI~~~~vtTiha~s~~q~------------~~D~--------~-----------------~~ 198 (250)
||||++|+++|+|||++|+|+++.+|||||+||+.+ ++++ . ..
T Consensus 133 NCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 212 (366)
T TIGR01745 133 NCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGEL 212 (366)
T ss_pred CHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhccccccccccCCC
Confidence 999999999999999999999999999999999862 1120 0 00
Q ss_pred CCcccccccccccccCC-----CCCcc----h-hhhhhhccc-cCCceeEEEEeeceeccc
Q 025639 199 KDWRGGRAASFNIIPSS-----TGAAK----V-HSVGRVIIF-YFFGLANSKISIIPYLTG 248 (250)
Q Consensus 199 ~d~~~~r~~~~NiiP~~-----~g~~k----~-~~~~kvlp~-l~~ki~~~~vr~VPv~~g 248 (250)
....++++++||+||++ +|+++ + +|++|||.. -..++++|||| |||++|
T Consensus 213 ~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVR-VPV~~g 272 (366)
T TIGR01745 213 PVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVR-IGALRC 272 (366)
T ss_pred CcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEe-cceecc
Confidence 12246899999999996 47765 2 899999943 24489999999 999998
No 25
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=5.8e-37 Score=281.83 Aligned_cols=212 Identities=15% Similarity=0.301 Sum_probs=168.8
Q ss_pred ceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 6 KIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 6 ~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
.+||||+| +|.+|+.++|+|.++++|+ +.++ +++ . +-++.+. .+.+.|+.+.+..
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~---v~~l--------~~~--a---------S~~saGk-~~~~~~~~l~v~~- 60 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFN---IAEV--------TLL--S---------SKRSAGK-TVQFKGREIIIQE- 60 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCC---cccE--------EEE--E---------CcccCCC-CeeeCCcceEEEe-
Confidence 37999999 9999999999999888899 3333 222 1 1233444 5778887777753
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----CCCeEEeecCccccCCCCCEEecCChhh
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPELDIVSNASCTT 159 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~~~~~~IIs~~sCtT 159 (250)
.+++ .|. ++|+||+|+|...++++++.+.++|+ +|||++++ |+|+++||||.+.+...++||+||+|+|
T Consensus 61 ~~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~t 134 (347)
T PRK06728 61 AKIN--SFE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSA 134 (347)
T ss_pred CCHH--Hhc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCHH
Confidence 2444 343 79999999999999999999999998 89999875 5999999999999875447999999999
Q ss_pred hhHHHHHHHHHhhcCeeEEEEEeeeccCCccc------------cccCCCCCCcccc-------cccccccccCC-----
Q 025639 160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSMKDWRGG-------RAASFNIIPSS----- 215 (250)
Q Consensus 160 ~~la~~l~~L~~~fgI~~~~vtTiha~s~~q~------------~~D~~~~~d~~~~-------r~~~~NiiP~~----- 215 (250)
++++..|+||+++++|+++.++|||++||+.+ ++++...+...++ ++++||+||++
T Consensus 135 t~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~~ 214 (347)
T PRK06728 135 LQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTD 214 (347)
T ss_pred HHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcCCcccc
Confidence 99999999999999999999999999999742 3333111222456 89999999997
Q ss_pred CCCcc----h-hhhhhhccccCCceeEEEEeeceeccc
Q 025639 216 TGAAK----V-HSVGRVIIFYFFGLANSKISIIPYLTG 248 (250)
Q Consensus 216 ~g~~k----~-~~~~kvlp~l~~ki~~~~vr~VPv~~g 248 (250)
+|+++ + +|++|||..-..++++|||| |||++|
T Consensus 215 ~g~t~EE~K~~~E~~KIL~~~~l~VsatcvR-VPV~~g 251 (347)
T PRK06728 215 NDFTFEEVKMIQETKKILEDPNLKMAATCVR-VPVISG 251 (347)
T ss_pred CCccHHHHHHHHHHHHHhCCCCCcEEEEEEe-cceecc
Confidence 56654 2 89999993333489999999 999998
No 26
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=8.3e-37 Score=280.73 Aligned_cols=208 Identities=22% Similarity=0.343 Sum_probs=171.6
Q ss_pred eeEEEEc-CChHHHHHHHHHHc--CCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEe
Q 025639 7 IKIGING-FGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~--~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~ 83 (250)
+||+|.| +|.+|+.++|+|.+ +|.++++++... +..+. .+.++|+.+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~-------------------------~~~g~-~l~~~g~~i~v~- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA-------------------------RSAGK-ELSFKGKELKVE- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc-------------------------ccCCC-eeeeCCceeEEe-
Confidence 6999999 99999999999998 577887777432 01122 355566555554
Q ss_pred cCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----CCCeEEeecCccccCCC--CCEEecCC
Q 025639 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE--LDIVSNAS 156 (250)
Q Consensus 84 ~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~~~~--~~IIs~~s 156 (250)
+++..+|. ++|+||+|+|.+.+++++++|+++|+ +|||.+++ |+|+++||+|++.++.. ++|||||+
T Consensus 55 --d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~ 128 (334)
T PRK14874 55 --DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPN 128 (334)
T ss_pred --eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECcc
Confidence 45545674 89999999999999999999999998 89988764 47999999999999764 47999999
Q ss_pred hhhhhHHHHHHHHHhhcCeeEEEEEeeeccCC------------ccccccCCC--CCCcccccccccccccCC-----CC
Q 025639 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA------------TQKTVDGPS--MKDWRGGRAASFNIIPSS-----TG 217 (250)
Q Consensus 157 CtT~~la~~l~~L~~~fgI~~~~vtTiha~s~------------~q~~~D~~~--~~d~~~~r~~~~NiiP~~-----~g 217 (250)
|+|+|++++|+||+++|+|+++.|||+|++|| +|.++|+++ .+++|++|++++|++|+. +|
T Consensus 129 C~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~g 208 (334)
T PRK14874 129 CSTIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDG 208 (334)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCC
Confidence 99999999999999999999999999999997 456677543 367889999999999997 66
Q ss_pred Ccc-----hhhhhhhc--cccCCceeEEEEeeceeccccC
Q 025639 218 AAK-----VHSVGRVI--IFYFFGLANSKISIIPYLTGSW 250 (250)
Q Consensus 218 ~~k-----~~~~~kvl--p~l~~ki~~~~vr~VPv~~g~~ 250 (250)
.++ +++++|++ |++ +++.+|+| |||++|+.
T Consensus 209 h~~eE~ki~~el~~il~~~~~--~v~~t~~r-vPv~~G~~ 245 (334)
T PRK14874 209 YTKEEMKMVNETKKILGDPDL--KVSATCVR-VPVFTGHS 245 (334)
T ss_pred CcHHHHHHHHHHHHHhCCCCC--eEEEEEEE-cceeccEE
Confidence 665 14578998 777 79999999 99999973
No 27
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=2.2e-36 Score=279.65 Aligned_cols=215 Identities=13% Similarity=0.127 Sum_probs=163.5
Q ss_pred ceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 6 KIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 6 ~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
++||||+| +|.+|+.++|.+.++++|+ +.++ +++ .| -++. ++.+.++|+...++..
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~---~~~l--------~~~--ss---------~~sg-~~~~~f~g~~~~v~~~ 57 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFD---LIEP--------VFF--ST---------SQAG-GAAPSFGGKEGTLQDA 57 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCC---cCcE--------EEe--cc---------hhhC-CcccccCCCcceEEec
Confidence 17999999 9999999999666666788 3332 111 11 1122 2234577776666543
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----CCCeEEeecCccccCCC--C--CEEecC
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE--L--DIVSNA 155 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~~~~--~--~IIs~~ 155 (250)
.+++ .|. ++|+||+|+|...++++++.+.++|++.+|||++++ |+|++|||||++.+... + ++|+||
T Consensus 58 ~~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIanP 133 (369)
T PRK06598 58 FDID--ALK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFVGG 133 (369)
T ss_pred CChh--Hhc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEEcC
Confidence 3333 343 799999999999999999999999954489999985 59999999999988642 2 489999
Q ss_pred ChhhhhHHHHHHHHHhhcCeeEEEEEeeeccCCccc------------ccc-------------------------CCCC
Q 025639 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVD-------------------------GPSM 198 (250)
Q Consensus 156 sCtT~~la~~l~~L~~~fgI~~~~vtTiha~s~~q~------------~~D-------------------------~~~~ 198 (250)
||+|++++++|+||++.++|+++.++|||++||+.+ +++ +...
T Consensus 134 nC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (369)
T PRK06598 134 NCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDL 213 (369)
T ss_pred ChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccCCC
Confidence 999999999999999999999999999999999853 111 1111
Q ss_pred CCcccccccccccccCC-----CCCcc----h-hhhhhhccc--cCCceeEEEEeeceeccc
Q 025639 199 KDWRGGRAASFNIIPSS-----TGAAK----V-HSVGRVIIF--YFFGLANSKISIIPYLTG 248 (250)
Q Consensus 199 ~d~~~~r~~~~NiiP~~-----~g~~k----~-~~~~kvlp~--l~~ki~~~~vr~VPv~~g 248 (250)
..-.++++++||+||++ +|+++ + +|++|||.. ...++++|||| |||++|
T Consensus 214 ~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVR-VPV~~g 274 (369)
T PRK06598 214 PTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVR-VGAMRC 274 (369)
T ss_pred CcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEE-cceecc
Confidence 12246789999999997 57765 2 899999942 23489999999 999998
No 28
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=5.9e-36 Score=275.60 Aligned_cols=206 Identities=23% Similarity=0.347 Sum_probs=162.4
Q ss_pred eEEEEc-CChHHHHHHHHHHcC--CCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 8 KIGING-FGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~--~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
||+|+| +|.+|+.++|+|.++ |.++++.+... +..+. .+.+.|+.+.+..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~-------------------------~~~g~-~~~~~~~~~~~~~- 53 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD-------------------------RSAGR-KVTFKGKELEVNE- 53 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc-------------------------ccCCC-eeeeCCeeEEEEe-
Confidence 689999 999999999999984 55554444221 11222 3555555554432
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----CCCeEEeecCccccCC--CCCEEecCCh
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELDIVSNASC 157 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~~~--~~~IIs~~sC 157 (250)
.+...|. ++|+||+|+|.+.++++++.|+++|+ +|||.+++ |+|+++||||++.++. .+++||||+|
T Consensus 54 --~~~~~~~--~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C 127 (339)
T TIGR01296 54 --AKIESFE--GIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNC 127 (339)
T ss_pred --CChHHhc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCc
Confidence 2222353 89999999999999999999999998 69988863 4799999999999875 2559999999
Q ss_pred hhhhHHHHHHHHHhhcCeeEEEEEeeeccCCc------------cccccCCCCCC-------cccccccccccccCC---
Q 025639 158 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT------------QKTVDGPSMKD-------WRGGRAASFNIIPSS--- 215 (250)
Q Consensus 158 tT~~la~~l~~L~~~fgI~~~~vtTiha~s~~------------q~~~D~~~~~d-------~~~~r~~~~NiiP~~--- 215 (250)
+|+|++++|+||+++|+|+++.|||+|++||+ |+++++++..+ .+++|++++||||++
T Consensus 128 ~~t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~ 207 (339)
T TIGR01296 128 STIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDF 207 (339)
T ss_pred HHHHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCc
Confidence 99999999999999999999999999999997 44566654222 788999999999995
Q ss_pred --CCCcchhhhhhhccccC-------CceeEEEEeeceecccc
Q 025639 216 --TGAAKVHSVGRVIIFYF-------FGLANSKISIIPYLTGS 249 (250)
Q Consensus 216 --~g~~k~~~~~kvlp~l~-------~ki~~~~vr~VPv~~g~ 249 (250)
+|.++ |..|+.++|+ .+++++|+| |||++|+
T Consensus 208 ~~~~~~~--Ee~ki~~el~~i~~~~~~~v~~t~~r-VPv~~G~ 247 (339)
T TIGR01296 208 NDDGYTK--EETKMLFETRKIMGIPDFKVSATCVR-VPVFTGH 247 (339)
T ss_pred ccCCCCH--HHHHHHHHHHHHhCCCCCcEEEEeEE-ccccccE
Confidence 57777 6666666654 479999999 9999996
No 29
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.98 E-value=1.5e-31 Score=245.52 Aligned_cols=210 Identities=24% Similarity=0.304 Sum_probs=165.0
Q ss_pred ceeEEEEc-CChHHHHHHHHHHc--CCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEE
Q 025639 6 KIKIGING-FGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (250)
Q Consensus 6 ~~kVaI~G-~G~IGr~~lr~l~~--~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~ 82 (250)
++||||+| +|.+|+.++|+|.+ +|.++++.+... ++.+. .+.++|+.+.+.
T Consensus 4 ~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~-------------------------~saG~-~~~~~~~~~~v~ 57 (336)
T PRK08040 4 GWNIALLGATGAVGEALLELLAERQFPVGELYALASE-------------------------ESAGE-TLRFGGKSVTVQ 57 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc-------------------------CcCCc-eEEECCcceEEE
Confidence 47999999 99999999999999 577887666321 12333 566777766664
Q ss_pred ecCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----CCCeEEeecCccccCC--CCCEEecC
Q 025639 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELDIVSNA 155 (250)
Q Consensus 83 ~~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~~~--~~~IIs~~ 155 (250)
++++++|. ++|+||+|++...++++++.+.++|+ +||+++++ |+|+++||+|.+.++. ..+||+||
T Consensus 58 ---~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAnP 130 (336)
T PRK08040 58 ---DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAVA 130 (336)
T ss_pred ---eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEECC
Confidence 46667775 79999999999999999999989998 78999874 5899999999965543 46799999
Q ss_pred ChhhhhHHHHHHHHHhhcCeeEEEEEeeeccCCccc------------cccCCCCCCcccccccccccccCCCC---Ccc
Q 025639 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSMKDWRGGRAASFNIIPSSTG---AAK 220 (250)
Q Consensus 156 sCtT~~la~~l~~L~~~fgI~~~~vtTiha~s~~q~------------~~D~~~~~d~~~~r~~~~NiiP~~~g---~~k 220 (250)
+|+|++++..|+||+++++|+++.|+|+|++||+.+ +++|.+.+...+++++++|++|++.+ ...
T Consensus 131 gC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~ 210 (336)
T PRK08040 131 DSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVR 210 (336)
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcch
Confidence 999999999999999999999999999999999853 22221112245677899999999432 221
Q ss_pred -----hhhhhhhccccCCceeEEEEeeceecccc
Q 025639 221 -----VHSVGRVIIFYFFGLANSKISIIPYLTGS 249 (250)
Q Consensus 221 -----~~~~~kvlp~l~~ki~~~~vr~VPv~~g~ 249 (250)
..|++|+|..-+.+++.||+| |||++|-
T Consensus 211 ~erh~~~Ei~kiL~~~~~~vs~t~~~-vPv~rG~ 243 (336)
T PRK08040 211 EERRLVDQVRKILQDEGLPISVSCVQ-SPVFYGH 243 (336)
T ss_pred HhhhhHHHHHHHhCCCCCeEEEEeEE-ecchhcE
Confidence 257888883223369999999 9999983
No 30
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.97 E-value=5.7e-30 Score=235.38 Aligned_cols=209 Identities=16% Similarity=0.226 Sum_probs=162.3
Q ss_pred eeEEEEc-CChHHHHHHHHHHc--CCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEe
Q 025639 7 IKIGING-FGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~--~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~ 83 (250)
+||+|+| +|.+|+.++|+|.+ +|.++++.+... + ..+. .+.+.|+.+.+.
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-------------~------------~aG~-~l~~~~~~l~~~- 57 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-------------E------------SAGH-SVPFAGKNLRVR- 57 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-------------c------------cCCC-eeccCCcceEEe-
Confidence 7999999 99999999999994 577777666433 1 1222 455555555553
Q ss_pred cCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC----CCCeEEeecCccccCC--CCCEEecCCh
Q 025639 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK----DAPMFVVGVNEKEYKP--ELDIVSNASC 157 (250)
Q Consensus 84 ~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~----d~p~iV~gVN~~~~~~--~~~IIs~~sC 157 (250)
+++..+|+ ++|+||.|++...+.++++.++++|+ .||+++++ |+|+++||+|.+.+.. ..+||+||+|
T Consensus 58 --~~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPgC 131 (336)
T PRK05671 58 --EVDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPSA 131 (336)
T ss_pred --eCChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCCc
Confidence 23333453 79999999999889999999889998 68988875 6999999999998874 2689999999
Q ss_pred hhhhHHHHHHHHHhhcCeeEEEEEeeeccCCccc-ccc-----------CCCCCCcccccccccccccCCC-----CCcc
Q 025639 158 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVD-----------GPSMKDWRGGRAASFNIIPSST-----GAAK 220 (250)
Q Consensus 158 tT~~la~~l~~L~~~fgI~~~~vtTiha~s~~q~-~~D-----------~~~~~d~~~~r~~~~NiiP~~~-----g~~k 220 (250)
+|++++..|+||++.++++++.++|+|++||+.+ ..+ +..-..-.++++++||++|+.. |.++
T Consensus 132 ~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~ 211 (336)
T PRK05671 132 SAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGHTA 211 (336)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccCCccH
Confidence 9999999999999999999999999999999753 111 1000122468899999999974 5543
Q ss_pred ----h-hhhhhhccccCCceeEEEEeeceecccc
Q 025639 221 ----V-HSVGRVIIFYFFGLANSKISIIPYLTGS 249 (250)
Q Consensus 221 ----~-~~~~kvlp~l~~ki~~~~vr~VPv~~g~ 249 (250)
+ .|++|+|...+.+++.||+| |||++|-
T Consensus 212 eE~r~~~Ei~kiL~~~~~~v~~t~~~-vPv~rG~ 244 (336)
T PRK05671 212 LERRLVAELRQLLGLPELKISVTCIQ-VPVFFGD 244 (336)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeEE-echhhhE
Confidence 1 68889984334579999999 9999983
No 31
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.96 E-value=2.9e-29 Score=231.42 Aligned_cols=211 Identities=15% Similarity=0.202 Sum_probs=160.5
Q ss_pred CceeEEEEc-CChHHHHHHHHHHc--CCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEE
Q 025639 5 KKIKIGING-FGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV 81 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~--~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v 81 (250)
+++||+|+| +|.+|+.++|+|.+ +|.+++..+... +..+. .+.++|+.+.+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~-------------------------rsaGk-~~~~~~~~~~v 59 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA-------------------------RSAGK-KVTFEGRDYTV 59 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc-------------------------CCCCC-eeeecCceeEE
Confidence 468999999 99999999999998 677776666322 11222 34455555444
Q ss_pred EecCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----CCCeEEeecCccccCCC------CC
Q 025639 82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE------LD 150 (250)
Q Consensus 82 ~~~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~~~~------~~ 150 (250)
. ..+++ .|. ++|+||+|+|...++++++.+.++|| +||+++++ ++|+++||+|.+.+... .+
T Consensus 60 ~-~~~~~--~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~ 132 (344)
T PLN02383 60 E-ELTED--SFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGA 132 (344)
T ss_pred E-eCCHH--HHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCc
Confidence 3 22333 343 79999999999999999998888998 78999875 58999999999988752 34
Q ss_pred EEecCChhhhhHHHHHHHHHhhcCeeEEEEEeeeccCCccc-cc-----------cCCCCCCcccccccccccccCCC--
Q 025639 151 IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TV-----------DGPSMKDWRGGRAASFNIIPSST-- 216 (250)
Q Consensus 151 IIs~~sCtT~~la~~l~~L~~~fgI~~~~vtTiha~s~~q~-~~-----------D~~~~~d~~~~r~~~~NiiP~~~-- 216 (250)
||+||+|+|++++..|+||+++++|+++.++|||++||+.+ .. .+.+....+.+...++|++|+.+
T Consensus 133 iIanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~ 212 (344)
T PLN02383 133 LIANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPM 212 (344)
T ss_pred EEECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCcc
Confidence 99999999999999999999999999999999999999753 22 21100123567789999999964
Q ss_pred ---CCcc----h-hhhhhhccccCCceeEEEEeeceecccc
Q 025639 217 ---GAAK----V-HSVGRVIIFYFFGLANSKISIIPYLTGS 249 (250)
Q Consensus 217 ---g~~k----~-~~~~kvlp~l~~ki~~~~vr~VPv~~g~ 249 (250)
|+++ + ++++|++..-+.+++.||+| |||++|-
T Consensus 213 ~~~g~~~~E~~~~~e~~kil~~~~~~v~~t~~~-vPv~rG~ 252 (344)
T PLN02383 213 QENGYNEEEMKLVKETRKIWNDDDVKVTATCIR-VPVMRAH 252 (344)
T ss_pred ccCCCChHHHHHHHHHHHHhCCCCCeEEEEeEe-cCccccE
Confidence 4443 1 67778883223479999999 9999983
No 32
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.95 E-value=1e-27 Score=221.71 Aligned_cols=215 Identities=22% Similarity=0.288 Sum_probs=150.9
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEe
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~ 83 (250)
|++||+|+| +|.+|+.++|+|.++|+++++++... .+..-.. +++.++ |. ..+ .+.-.-+.+.+.
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s---~~~~G~~--~~~~~~-~~------~~~-~~~~~~~~~~v~- 67 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAAS---ERSAGKT--YGEAVR-WQ------LDG-PIPEEVADMEVV- 67 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC---hhhcCCc--cccccc-cc------ccc-cccccccceEEE-
Confidence 458999999 99999999999999999999998322 1100000 011110 00 000 000000223332
Q ss_pred cCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----CCCeEEeecCccccCC----------C
Q 025639 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP----------E 148 (250)
Q Consensus 84 ~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~~~----------~ 148 (250)
..+++. |. ++|+||+|++...+.+.++...++|+ .+|+.++. +.|++++++|++.|.. +
T Consensus 68 ~~~~~~--~~--~~DvVf~a~p~~~s~~~~~~~~~~G~--~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~ 141 (349)
T PRK08664 68 STDPEA--VD--DVDIVFSALPSDVAGEVEEEFAKAGK--PVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWD 141 (349)
T ss_pred eCCHHH--hc--CCCEEEEeCChhHHHHHHHHHHHCCC--EEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCC
Confidence 224543 32 78999999999988888888888898 35555542 4789999999987632 1
Q ss_pred CCEEecCChhhhhHHHHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCc-ch-hhhhh
Q 025639 149 LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA-KV-HSVGR 226 (250)
Q Consensus 149 ~~IIs~~sCtT~~la~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~-k~-~~~~k 226 (250)
.++||||+|+|+|++++|+||++ |||+++.+||+|++||+++-. +..+.+++|++|+..+.. +. .|+.+
T Consensus 142 ~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~--------~~~~~~~~N~~p~~~~~ehrh~~Ei~~ 212 (349)
T PRK08664 142 GFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPG--------VPSMDIVDNVIPYIGGEEEKIEKETLK 212 (349)
T ss_pred ceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCccc--------chhhhhhcCcccccCchhhhhhHHHHH
Confidence 26999999999999999999999 999999999999999985321 124578999999987751 21 24444
Q ss_pred hc--------cccCCceeEEEEeeceecccc
Q 025639 227 VI--------IFYFFGLANSKISIIPYLTGS 249 (250)
Q Consensus 227 vl--------p~l~~ki~~~~vr~VPv~~g~ 249 (250)
+| |.++.+++.+|+| ||+++|+
T Consensus 213 ~l~~~~~~~~~~~~~~v~~t~~~-vPv~rG~ 242 (349)
T PRK08664 213 ILGKFEGGKIVPADFPISATCHR-VPVIDGH 242 (349)
T ss_pred HhhhcccccccCCCceEEEEeEE-ccccccE
Confidence 44 4457789999999 9999996
No 33
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.95 E-value=3.3e-27 Score=217.63 Aligned_cols=214 Identities=19% Similarity=0.234 Sum_probs=154.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
+||||+| +|.+|+.++++|.++++++++++.+. .+..... +...+.. ..+ ++ +.-.-..+.+. ..
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~---~~~~g~~--~~~~~~~-----~~~-~~--~~~~~~~~~~~-~~ 66 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVAS---PRSAGKR--YGEAVKW-----IEP-GD--MPEYVRDLPIV-EP 66 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEC---hhhcCCc--chhhccc-----ccc-CC--CccccceeEEE-eC
Confidence 4899999 99999999999999998999998654 1100000 0100000 000 00 00000122332 22
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----CCCeEEeecCccccCC---------CCCE
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP---------ELDI 151 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~~~---------~~~I 151 (250)
+++ .| .++|+||+|++...+.+.++.+.++|+ .+|+.++. ++|+++|++|++.|.. ..+|
T Consensus 67 ~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~--~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~i 140 (341)
T TIGR00978 67 EPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGK--PVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFI 140 (341)
T ss_pred CHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCC--EEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccE
Confidence 333 34 379999999999999999988888998 45666543 4899999999987653 1259
Q ss_pred EecCChhhhhHHHHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCc-c-hhhhhhhcc
Q 025639 152 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA-K-VHSVGRVII 229 (250)
Q Consensus 152 Is~~sCtT~~la~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~-k-~~~~~kvlp 229 (250)
|+||+|+|+|++++|+||+++++|+++.++|+|++||+++.. .+ .+.+++|++|+..+.. + +.|++++|+
T Consensus 141 VanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~-----~~---~~~~~~Ni~py~~~~ehrh~~Ei~~il~ 212 (341)
T TIGR00978 141 VTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPG-----VP---SMDILDNIIPHIGGEEEKIERETRKILG 212 (341)
T ss_pred EeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCC-----Cc---cchhhCCeEecCcHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999996431 11 2468999999987752 2 258899998
Q ss_pred ccCC--------ceeEEEEeeceecccc
Q 025639 230 FYFF--------GLANSKISIIPYLTGS 249 (250)
Q Consensus 230 ~l~~--------ki~~~~vr~VPv~~g~ 249 (250)
.+++ +++.+|+| ||+++|.
T Consensus 213 ~~~~~~~~~~~~~v~~t~~~-vPv~rG~ 239 (341)
T TIGR00978 213 KLENGKIEPAPFSVSATTTR-VPVLDGH 239 (341)
T ss_pred ccccCcccCCCceEEEEEEE-cCccccE
Confidence 7633 59999999 9999995
No 34
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.94 E-value=3.5e-27 Score=205.71 Aligned_cols=212 Identities=16% Similarity=0.197 Sum_probs=154.6
Q ss_pred eEE-EEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 8 KIG-ING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 8 kVa-I~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
|+| |+| ||.|||+++-+|.+||+|+|-....+ .. +.-.+|.. -|+|. .+.- |.-.-..+.|. +-
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS---~R--SAGK~ya~-a~~wk-qt~~------lp~~~~e~~V~-ec 70 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGAS---KR--SAGKRYAF-AGNWK-QTDL------LPESAHEYTVE-EC 70 (361)
T ss_pred cccceeeccchhHHHHHHHhccCCcceeeeeccc---cc--ccCCceEe-cccch-hccc------ccchhhhhhHh-hc
Confidence 566 999 99999999999999999986555333 10 01111211 13333 1111 11111234443 33
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----CCCeEEeecCccccCC-----------CC
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP-----------EL 149 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~~~-----------~~ 149 (250)
+++.|. ++||||+..+...+.|.-+.+.++|. +|+||++. ++||+||+||+++++. ..
T Consensus 71 ~~~~F~----ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G 144 (361)
T KOG4777|consen 71 TADSFN----ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKG 144 (361)
T ss_pred Chhhcc----cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCc
Confidence 566554 89999999999888888888888987 88999875 4999999999999864 13
Q ss_pred CEEecCChhhhhHHHHHHHHHhhc-CeeEEEEEeeeccCCccccccCC-CCCCcccccccccccccCCCCCcc-h-hhhh
Q 025639 150 DIVSNASCTTNCLAPLAKVIHDKF-GIVEGLMTTVHSITATQKTVDGP-SMKDWRGGRAASFNIIPSSTGAAK-V-HSVG 225 (250)
Q Consensus 150 ~IIs~~sCtT~~la~~l~~L~~~f-gI~~~~vtTiha~s~~q~~~D~~-~~~d~~~~r~~~~NiiP~~~g~~k-~-~~~~ 225 (250)
.||+|+||+|..+..+|||||++| .|++..++|||++||+ |+ ++ ...-++..||+|.+.|... + |+++
T Consensus 145 ~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGA-----G~apg---v~~vdildnilp~iggee~k~ewet~ 216 (361)
T KOG4777|consen 145 AIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGA-----GAAPG---VELVDILDNILPGIGGEENKFEWETA 216 (361)
T ss_pred eEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccC-----CcCCC---chHHHHHHhhcCCCCccchhhhHHHH
Confidence 699999999999999999999999 6999999999999998 43 22 2344688999999988763 3 8888
Q ss_pred hhccccCC-----------ceeEEEEeeceeccc
Q 025639 226 RVIIFYFF-----------GLANSKISIIPYLTG 248 (250)
Q Consensus 226 kvlp~l~~-----------ki~~~~vr~VPv~~g 248 (250)
|+|-.++- .+++.|.| |||..|
T Consensus 217 kiL~s~n~~i~~~~l~ee~~vsaqcnR-v~v~Dg 249 (361)
T KOG4777|consen 217 KILFSHNAPILDNGLNEEEMVSAQCNR-VIVNDG 249 (361)
T ss_pred HhhhccCCccccccccHHHhhhhhcce-eeEecC
Confidence 88733332 46688888 888766
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.92 E-value=3.7e-24 Score=197.56 Aligned_cols=208 Identities=18% Similarity=0.211 Sum_probs=146.5
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEe
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~ 83 (250)
|++||||+| +|.+|+.+++.|.++|+++++++.+. .+.. ..+ ...|+.+. + + . ...+ +
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-~~~g---~~l--~~~~~~~~--------~--~-~---~~~~-~ 59 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-SSAG---KPL--SDVHPHLR--------G--L-V---DLVL-E 59 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-cccC---cch--HHhCcccc--------c--c-c---Ccee-e
Confidence 568999999 89999999999999999999998763 1100 000 00011000 0 0 0 1111 1
Q ss_pred cCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC------C------------------CCeEEee
Q 025639 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK------D------------------APMFVVG 139 (250)
Q Consensus 84 ~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~------d------------------~p~iV~g 139 (250)
+.++..|. ++|+||.|++.....+.++..+++|+ .|||++++ | .|+.+||
T Consensus 60 --~~~~~~~~--~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe 133 (343)
T PRK00436 60 --PLDPEILA--GADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPE 133 (343)
T ss_pred --cCCHHHhc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCc
Confidence 22222333 69999999999999999999888886 89988864 2 5899999
Q ss_pred cCccccCCCCCEEecCChhhhhHHHHHHHHHhhcCee--EEEEEeeeccCCccc-cccCCCCCCcccccccccccccCCC
Q 025639 140 VNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQK-TVDGPSMKDWRGGRAASFNIIPSST 216 (250)
Q Consensus 140 VN~~~~~~~~~IIs~~sCtT~~la~~l~~L~~~fgI~--~~~vtTiha~s~~q~-~~D~~~~~d~~~~r~~~~NiiP~~~ 216 (250)
+|.+.+.. .++|+||+|+|++++.+|+||+++.+|+ ++.++|+|++||+.+ ..+..+.. .+.+.-.++|++|+.+
T Consensus 134 ~~~~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~-~~~~~~~~y~~~~h~h 211 (343)
T PRK00436 134 LNREEIKG-ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFS-EVNENLRPYKVGGHRH 211 (343)
T ss_pred cCHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccch-hhcCCeeecccCCCCC
Confidence 99998874 5899999999999999999999998898 899999999999864 33322111 1111123566666543
Q ss_pred CCcc-h-hhhhhhccccCCceeEEEEeeceeccc
Q 025639 217 GAAK-V-HSVGRVIIFYFFGLANSKISIIPYLTG 248 (250)
Q Consensus 217 g~~k-~-~~~~kvlp~l~~ki~~~~vr~VPv~~g 248 (250)
.. + ++++|++. +++.||+| |||++|
T Consensus 212 --~~Ei~~~l~~~~~----~v~~t~~~-vPv~~G 238 (343)
T PRK00436 212 --TPEIEQELSALAG----EVSFTPHL-VPMTRG 238 (343)
T ss_pred --HHHHHHHHHHhcC----CEEEEeEE-ecccCc
Confidence 23 1 34444442 79999999 999998
No 36
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=99.91 E-value=3.7e-25 Score=183.30 Aligned_cols=84 Identities=52% Similarity=0.772 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCCCCCcchhhhhhhccccCCceeEEEEe
Q 025639 162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLANSKIS 241 (250)
Q Consensus 162 la~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~~g~~k~~~~~kvlp~l~~ki~~~~vr 241 (250)
|+|++|+|+++|||++++|||+|+++++|+++|+++ +|||++|++++||||+.+|+++ ++++|||+|+||+++.++|
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~--av~~VlP~L~gki~g~a~r 77 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAK--AVGKVLPELNGKITGMAVR 77 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHH--HHHHHSGGGTTTEEEEEEE
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccch--hhhhhhhhccCcceeeEEe
Confidence 799999999999999999999999999999999998 8999999999999999999999 9999999999999999999
Q ss_pred eceecccc
Q 025639 242 IIPYLTGS 249 (250)
Q Consensus 242 ~VPv~~g~ 249 (250)
||++++|
T Consensus 78 -VPt~~~s 84 (157)
T PF02800_consen 78 -VPTPNVS 84 (157)
T ss_dssp -ESSSSEE
T ss_pred -eeecccC
Confidence 9999997
No 37
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.90 E-value=4.4e-23 Score=190.62 Aligned_cols=207 Identities=17% Similarity=0.177 Sum_probs=143.6
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCE-EEEEEec
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK-PVAVFGF 84 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~-~i~v~~~ 84 (250)
+||||.| +|.+|+.++|.|.++|+++++++-++..+. ... +...|+.+. +. ...+ ..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sa---gk~--~~~~~~~l~---------------~~~~~~~-~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESA---GKP--VSEVHPHLR---------------GLVDLNL-EP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhc---CCC--hHHhCcccc---------------ccCCcee-ec
Confidence 4899999 899999999999999999998774430000 000 011111111 10 1112 11
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC----C--------------------CCeEEeec
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK----D--------------------APMFVVGV 140 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~----d--------------------~p~iV~gV 140 (250)
.++++ |.+ ++|+||.|++...+++.++..+++|+ +||+.+++ + .|..+||+
T Consensus 60 ~~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~ 134 (346)
T TIGR01850 60 IDEEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPEL 134 (346)
T ss_pred CCHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCcc
Confidence 12322 222 69999999999999999999888886 78888763 2 78999999
Q ss_pred CccccCCCCCEEecCChhhhhHHHHHHHHHhhcCee--EEEEEeeeccCCccc-cccCCCCCCcccccccccccccCCCC
Q 025639 141 NEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQK-TVDGPSMKDWRGGRAASFNIIPSSTG 217 (250)
Q Consensus 141 N~~~~~~~~~IIs~~sCtT~~la~~l~~L~~~fgI~--~~~vtTiha~s~~q~-~~D~~~~~d~~~~r~~~~NiiP~~~g 217 (250)
|.+.+.. .++|+||+|.++++...|+||++++.|+ ++.++|++++||+.+ ..+..+. . ....|+.|+.-+
T Consensus 135 n~~~i~~-~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~-~-----~~~~~~~~y~~~ 207 (346)
T TIGR01850 135 HREEIKG-ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHF-P-----EVNENLRPYKVT 207 (346)
T ss_pred CHHHhCC-CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccc-h-----hhcCCeeeeccC
Confidence 9988864 6799999999999999999999998887 799999999999964 3332221 1 112344444322
Q ss_pred C---cc-h-hhhhhhccccCCceeEEEEeeceeccc
Q 025639 218 A---AK-V-HSVGRVIIFYFFGLANSKISIIPYLTG 248 (250)
Q Consensus 218 ~---~k-~-~~~~kvlp~l~~ki~~~~vr~VPv~~g 248 (250)
. +. + ++++|++. -+.+++.||+| ||+++|
T Consensus 208 ~h~h~~Ei~~~l~~~~~-~~~~v~ft~~~-vPv~rG 241 (346)
T TIGR01850 208 GHRHTPEIEQELGRLAG-GKVKVSFTPHL-VPMTRG 241 (346)
T ss_pred CcCcHHHHHHHHHHhcC-CCCCEEEEeEE-eecccc
Confidence 1 11 2 56777753 13479999999 999998
No 38
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.88 E-value=2.4e-22 Score=187.77 Aligned_cols=212 Identities=12% Similarity=0.086 Sum_probs=142.4
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEe
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~ 83 (250)
|++||+|+| +|.+|+.++|+|.+||+++|+.+..- . + .|+- +..... .+ .+....-++
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~---~----------s-aG~~----i~~~~~-~l--~~~~~~~~~ 95 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD---R----------K-AGQS----FGSVFP-HL--ITQDLPNLV 95 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh---h----------h-cCCC----chhhCc-cc--cCcccccee
Confidence 668999999 99999999999999999998887532 1 0 1210 000000 01 111111111
Q ss_pred cCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----C--------CCeEEeecCccc-cC---
Q 025639 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----D--------APMFVVGVNEKE-YK--- 146 (250)
Q Consensus 84 ~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d--------~p~iV~gVN~~~-~~--- 146 (250)
+.+..+|. ++|+||.|+|...+.+.++. +++|+ .||+.+++ + +|+.+|++|.+. |.
T Consensus 96 --~~~~~~~~--~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE 168 (381)
T PLN02968 96 --AVKDADFS--DVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTE 168 (381)
T ss_pred --cCCHHHhc--CCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccch
Confidence 12222343 79999999999888888887 46776 68888874 3 688999999875 42
Q ss_pred ------CCCCEEecCChhhhhHHHHHHHHHhhcCe--eEEEEEeeeccCCccc-cccCCCCCCc-ccccccccccccCCC
Q 025639 147 ------PELDIVSNASCTTNCLAPLAKVIHDKFGI--VEGLMTTVHSITATQK-TVDGPSMKDW-RGGRAASFNIIPSST 216 (250)
Q Consensus 147 ------~~~~IIs~~sCtT~~la~~l~~L~~~fgI--~~~~vtTiha~s~~q~-~~D~~~~~d~-~~~r~~~~NiiP~~~ 216 (250)
...++|+||+|.|+++...|+||+++++| +++.+++++++||+.+ ..+..+..+. ..-++..+|..|+..
T Consensus 169 ~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~n~~~y~~~~h~h~p 248 (381)
T PLN02968 169 LQREEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAEGIGAYGVTRHRHVP 248 (381)
T ss_pred hCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhcccceeeccCCCCCcc
Confidence 13579999999999999999999999999 7899999999999864 2222110000 012455666666552
Q ss_pred CCcchhhhhhhccccCCceeEEEEeeceeccc
Q 025639 217 GAAKVHSVGRVIIFYFFGLANSKISIIPYLTG 248 (250)
Q Consensus 217 g~~k~~~~~kvlp~l~~ki~~~~vr~VPv~~g 248 (250)
... +.+.+++. .+.+++.||+| ||+++|
T Consensus 249 Eie--~~~~~~~~-~~~~v~ft~~~-vPv~rG 276 (381)
T PLN02968 249 EIE--QGLADAAG-SKVTPSFTPHL-MPMSRG 276 (381)
T ss_pred hHH--HHHHHHhC-CCCCEEEEeEE-eecccc
Confidence 211 23445542 23369999999 999998
No 39
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.84 E-value=2.7e-20 Score=169.49 Aligned_cols=191 Identities=14% Similarity=0.090 Sum_probs=136.1
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEe
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~ 83 (250)
|++||||+| +|.+|++++|+|.+||+++++++... . ++.+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~---~-------------------------~~~~----------- 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEA---K-------------------------RKDA----------- 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecC---C-------------------------CCcc-----------
Confidence 779999999 99999999999999999998777532 0 0011
Q ss_pred cCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----CCCeEEeecCccccCC--CCCEEecCC
Q 025639 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELDIVSNAS 156 (250)
Q Consensus 84 ~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~~~--~~~IIs~~s 156 (250)
.+.+..|. ++|+||.|++...++++++...+.|+ +|||.+++ +.|..+||+|++..+. ..++|+||+
T Consensus 42 --~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPg 115 (313)
T PRK11863 42 --AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPG 115 (313)
T ss_pred --cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCC
Confidence 01112343 68999999999999999998888998 68998874 5899999999765443 568999999
Q ss_pred hhhhhHHHHHHHHHhhcCeeEEEEEeeeccCC---ccc-cccCCCCCCcc--cccccccccccCCCC-Ccc-hhhhhhhc
Q 025639 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA---TQK-TVDGPSMKDWR--GGRAASFNIIPSSTG-AAK-VHSVGRVI 228 (250)
Q Consensus 157 CtT~~la~~l~~L~~~fgI~~~~vtTiha~s~---~q~-~~D~~~~~d~~--~~r~~~~NiiP~~~g-~~k-~~~~~kvl 228 (250)
|.++++...|+||+++..+++...++++++|| +.+ ..+ +.. +. .+..|+.|+.-+ .-| +-|+.+.|
T Consensus 116 C~~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~~-----~~~~~~~-~~~~n~~~Y~~~~~HrH~pEi~~~l 189 (313)
T PRK11863 116 CYPTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMIA-----AYEAAPD-GKAPAFRLYGLGLAHKHLPEMQAHA 189 (313)
T ss_pred cHHHHHHHHHHHHHHcCCcccCceEEEEEccccccCCccchH-----HHhhhhh-hhccCeeeccCCcCCcchHHHHHHh
Confidence 99999999999999976676666789999964 432 111 111 11 367799999765 333 12555555
Q ss_pred cccCCceeEEEEeeceeccc
Q 025639 229 IFYFFGLANSKISIIPYLTG 248 (250)
Q Consensus 229 p~l~~ki~~~~vr~VPv~~g 248 (250)
..+ -++.=+-.- +|+++|
T Consensus 190 ~~~-~~~~F~Phl-~p~~rG 207 (313)
T PRK11863 190 GLA-RRPIFTPSV-GNFRQG 207 (313)
T ss_pred ccc-cCcEEEeeE-ccccCc
Confidence 332 122223333 677766
No 40
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.72 E-value=5.5e-17 Score=147.31 Aligned_cols=137 Identities=13% Similarity=0.163 Sum_probs=110.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
.||+|+| +|-.|.+++|+|..||++|++.+... .. |. ..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~---~~--------------~~-----------------------~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPD---RR--------------KD-----------------------AA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecc---cc--------------cC-----------------------cC
Confidence 4899999 99999999999999999998888532 00 00 00
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----CCCeEEeecCccccCC--CCCEEecCChh
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELDIVSNASCT 158 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~~~--~~~IIs~~sCt 158 (250)
+++++ + .++|+||.|++...++++++...++|+ .||+.+++ +.|..+||+|++..+. ..++|+||+|.
T Consensus 42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 11111 1 168999999999999999988888888 68988864 5899999998765443 46899999999
Q ss_pred hhhHHHHHHHHHhhcCeeEEEEEeeeccCC
Q 025639 159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITA 188 (250)
Q Consensus 159 T~~la~~l~~L~~~fgI~~~~vtTiha~s~ 188 (250)
+++++..|+||+++..|++..++++++.||
T Consensus 117 aTa~~LaL~PL~~~~li~~~~~~~~~a~SG 146 (310)
T TIGR01851 117 PTGFIALMRPLVEAGILPADFPITINAVSG 146 (310)
T ss_pred HHHHHHHHHHHHHcCCccccceEEEEeccc
Confidence 999999999999987777776899999987
No 41
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.70 E-value=5.9e-17 Score=146.74 Aligned_cols=154 Identities=17% Similarity=0.109 Sum_probs=114.8
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
++||||+|+|.||+.++..+.+.++++++++.+. +++.- .+++...+|. + ..+.+.+- +
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdi--d~es~--gla~A~~~Gi-~-----------~~~~~ie~-L---- 62 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGI--DPESD--GLARARRLGV-A-----------TSAEGIDG-L---- 62 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeC--ChhhH--HHHHHHHcCC-C-----------cccCCHHH-H----
Confidence 4899999999999998888887778999999987 44311 1111111221 0 00111000 0
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-CCCeEEeecCccccCC--CCCEEecCChhhhhH
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP--ELDIVSNASCTTNCL 162 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-d~p~iV~gVN~~~~~~--~~~IIs~~sCtT~~l 162 (250)
.++.+|. ++|+||+|||.....+.++.++++|+ .+|+..++ +.|++||+||.+.+.. +.++|+||+|+|+.+
T Consensus 63 -L~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~ 137 (302)
T PRK08300 63 -LAMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPI 137 (302)
T ss_pred -HhCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHH
Confidence 1111343 69999999999999999999999997 67777654 6999999999988754 468999999999999
Q ss_pred HHHHHHHHhhcCeeEEEEEeeeccC
Q 025639 163 APLAKVIHDKFGIVEGLMTTVHSIT 187 (250)
Q Consensus 163 a~~l~~L~~~fgI~~~~vtTiha~s 187 (250)
+..|+++++. ++.++. +||++.|
T Consensus 138 v~Al~~v~~~-~~~eIv-at~~s~s 160 (302)
T PRK08300 138 VAAVSRVAPV-HYAEIV-ASIASKS 160 (302)
T ss_pred HHHhcccCcC-ceeeee-eeehhhc
Confidence 9999998765 888887 9999999
No 42
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.54 E-value=5.7e-14 Score=126.70 Aligned_cols=151 Identities=19% Similarity=0.183 Sum_probs=110.6
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
+||||+|+|+||+..+..+.+.++++++++.+. +++... +++...+| - ...+++...-+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~--d~es~~--la~A~~~G-----------i-~~~~~~~e~ll----- 60 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGI--DPESDG--LARARELG-----------V-KTSAEGVDGLL----- 60 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeC--CcccHH--HHHHHHCC-----------C-CEEECCHHHHh-----
Confidence 799999999999988777776677999999986 343210 00000111 0 11121111000
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeC-CCCCCCeEEeecCccccCC--CCCEEecCChhhhhHH
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA-PSKDAPMFVVGVNEKEYKP--ELDIVSNASCTTNCLA 163 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~-~s~d~p~iV~gVN~~~~~~--~~~IIs~~sCtT~~la 163 (250)
.+.++|+||+||+.....+.+..++++|+ .||+. |..+.|+++|+||.+.... +.++|++++|+|+.++
T Consensus 61 ------~~~dIDaV~iaTp~~~H~e~a~~al~aGk--~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~ 132 (285)
T TIGR03215 61 ------ANPDIDIVFDATSAKAHARHARLLAELGK--IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIV 132 (285)
T ss_pred ------cCCCCCEEEECCCcHHHHHHHHHHHHcCC--EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHH
Confidence 01268999999999999999999999996 45554 4557999999999988754 4689999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEeeeccCC
Q 025639 164 PLAKVIHDKFGIVEGLMTTVHSITA 188 (250)
Q Consensus 164 ~~l~~L~~~fgI~~~~vtTiha~s~ 188 (250)
..++++++...+ ..++||++.|+
T Consensus 133 ~al~r~~d~~~~--~iv~ti~s~S~ 155 (285)
T TIGR03215 133 AAISRVAPVHYA--EIVASIASRSA 155 (285)
T ss_pred HHHHHhhccccE--EEEEEEEeecc
Confidence 999999988755 67788999996
No 43
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.31 E-value=1.7e-12 Score=102.56 Aligned_cols=113 Identities=27% Similarity=0.297 Sum_probs=79.1
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
||||+| +|.+|+.++++|.++|+++++.+-.... ..-.++...++.+. + ...+.+.. .+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~-----~~g~~~~~~~~~~~-------~-------~~~~~~~~-~~ 60 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR-----SAGKPLSEVFPHPK-------G-------FEDLSVED-AD 60 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT-----TTTSBHHHTTGGGT-------T-------TEEEBEEE-TS
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc-----ccCCeeehhccccc-------c-------ccceeEee-cc
Confidence 799999 9999999999999999999999876511 01112222222111 0 11222322 23
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-----CCCeEEeecCccccC
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYK 146 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~~ 146 (250)
++.+ .++|+||.|++...+++.++.+++.|+ .||+.++. +.|+.+||+|.+.+.
T Consensus 61 ~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 61 PEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp GHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred hhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 3333 289999999999999999999999999 78988874 489999999998764
No 44
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.04 E-value=4.7e-09 Score=96.30 Aligned_cols=142 Identities=17% Similarity=0.210 Sum_probs=95.1
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEe
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~ 83 (250)
|++||+|+| .|-.|-+++|+|..||++|+..+... ++ .-.++...|..+ .+. + .+++ +
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~----~~--~g~~~~~~~p~l-------~g~----~---~l~~-~ 59 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSR----ER--AGKPVSDVHPNL-------RGL----V---DLPF-Q 59 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeech----hh--cCCchHHhCccc-------ccc----c---cccc-c
Confidence 568999999 99999999999999999996555432 10 000000011100 110 0 1111 2
Q ss_pred cCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC---C--------------C----CeE---Eee
Q 025639 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---D--------------A----PMF---VVG 139 (250)
Q Consensus 84 ~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~---d--------------~----p~i---V~g 139 (250)
..|++.+ ...++|+||.|++...+++.++..++.|+ .||+.+.+ + . .-- .||
T Consensus 60 ~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~--~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpE 135 (349)
T COG0002 60 TIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGC--KVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPE 135 (349)
T ss_pred cCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCC--eEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcc
Confidence 2345544 22368999999999999999999999998 38876643 1 0 112 245
Q ss_pred cCccccCCCCCEEecCChhhhhHHHHHHHHHhh
Q 025639 140 VNEKEYKPELDIVSNASCTTNCLAPLAKVIHDK 172 (250)
Q Consensus 140 VN~~~~~~~~~IIs~~sCtT~~la~~l~~L~~~ 172 (250)
.|.+++. +-+.|+||.|-.++....|+||-++
T Consensus 136 l~~e~i~-~A~lIAnPGCypTa~iLal~PL~~~ 167 (349)
T COG0002 136 LHREKIR-GAKLIANPGCYPTAAILALAPLVKA 167 (349)
T ss_pred cCHHHHh-cCCEeeCCCchHHHHHHHHHHHHHc
Confidence 5665555 3579999999999999999999886
No 45
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=98.62 E-value=3.6e-08 Score=83.59 Aligned_cols=81 Identities=16% Similarity=0.312 Sum_probs=59.0
Q ss_pred HHHHHhh-cCeeEEEEEeeeccCCcccc------------ccCCCCCCcccccccccccccCCCCC-------cc-----
Q 025639 166 AKVIHDK-FGIVEGLMTTVHSITATQKT------------VDGPSMKDWRGGRAASFNIIPSSTGA-------AK----- 220 (250)
Q Consensus 166 l~~L~~~-fgI~~~~vtTiha~s~~q~~------------~D~~~~~d~~~~r~~~~NiiP~~~g~-------~k----- 220 (250)
|+||+++ ++++++.++|+|++||+.+- +.+...++.....++++|++|+..+. .+
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 6899997 99999999999999998642 22211123345678999999997552 21
Q ss_pred hhhhhhhccccCCceeEEEEeeceeccc
Q 025639 221 VHSVGRVIIFYFFGLANSKISIIPYLTG 248 (250)
Q Consensus 221 ~~~~~kvlp~l~~ki~~~~vr~VPv~~g 248 (250)
..+.++++..-. ++++||+| |||++|
T Consensus 81 ~~~~~~~l~~~~-~v~~t~~~-vPv~rG 106 (184)
T PF02774_consen 81 IAETRKILGFPP-RVSFTCVR-VPVFRG 106 (184)
T ss_dssp HHHHHHHCTETT-EEEEEEEE-ESSSSE
T ss_pred hccccceeeccc-cccccEEE-Eeeeee
Confidence 144556665433 89999999 999998
No 46
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.57 E-value=1.4e-07 Score=74.12 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=69.3
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
|+||.| +|++|+.+++.+.++++++++++... .+. .|+ ....... .+. .+ +.. +
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~---~~~----------~~~----~~~~~~~-~~~----~~-~~~--~ 55 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAAS---ARS----------AGK----RVSEAGP-HLK----GE-VVL--E 55 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEec---hhh----------cCc----CHHHHCc-ccc----cc-ccc--c
Confidence 689999 79999999999999888999999543 110 111 0000001 010 00 001 1
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHH---HHHHCCCCEEEEeCCCC-----CCCeEEeecCcccc
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAA---AHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEY 145 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~---~~~~~Gak~vvis~~s~-----d~p~iV~gVN~~~~ 145 (250)
.+...|.+.++|+||.|++.....+..+ ..++.|+ ++|+.++. |.|+.+|++|.+.+
T Consensus 56 ~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 56 LEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred cccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHh
Confidence 2222343457999999998877766433 3334565 88877764 57999999998754
No 47
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.16 E-value=5.7e-06 Score=73.97 Aligned_cols=145 Identities=17% Similarity=0.191 Sum_probs=86.5
Q ss_pred CceeEEEEcCChHHHHHHHHHHcC--CCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEE
Q 025639 5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~--~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~ 82 (250)
|.+||||+|+|.||+.+++.+... +.+++++|++. +++....+ . + . .++.
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~--~~~~~~~~-----------------~-~-~-------~~~~ 52 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN--AADLPPAL-----------------A-G-R-------VALL 52 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC--CHHHHHHh-----------------h-c-c-------Cccc
Confidence 778999999999999999998764 24999999876 22111110 0 1 0 1122
Q ss_pred ecCCCCCC-CcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCC-CCCCCeEEeecCccccCCCCCEEecCChhhh
Q 025639 83 GFRNPEEI-PWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP-SKDAPMFVVGVNEKEYKPELDIVSNASCTTN 160 (250)
Q Consensus 83 ~~~~p~~i-~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~-s~d~p~iV~gVN~~~~~~~~~IIs~~sCtT~ 160 (250)
.+++++ .| ..|+|+||++...-+|++++.|++|+.-+++|-. -+|.-+. -.+- +.......-|--||-..-
T Consensus 53 --~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~-~~l~-~~A~~~g~~i~ipSGAig 125 (267)
T PRK13301 53 --DGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDALR-ARLI-AAAEAGGARIRVPAGAIA 125 (267)
T ss_pred --CCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHH-HHHH-HHHHhCCCEEEEeChHHH
Confidence 245553 44 5899999999999999999999999877666643 2342111 0000 000111222333454444
Q ss_pred hHHHHHHHHHhhcCeeEEEEEeeecc
Q 025639 161 CLAPLAKVIHDKFGIVEGLMTTVHSI 186 (250)
Q Consensus 161 ~la~~l~~L~~~fgI~~~~vtTiha~ 186 (250)
+|-- |+.. +..|++++.++|--.-
T Consensus 126 GlD~-l~aa-~~~~~~~v~~~t~K~P 149 (267)
T PRK13301 126 GLDY-LQAV-AGRDDAEVVYESRKPV 149 (267)
T ss_pred hHHH-HHHh-hccCceEEEEEEecCh
Confidence 4332 2222 3468999888776443
No 48
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.09 E-value=1.2e-05 Score=72.01 Aligned_cols=147 Identities=18% Similarity=0.152 Sum_probs=82.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
|||||+|+|+||+.+++.+.+.++++++++.+.....+... + .+. ..+.++. +
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~---------------------~-~~~---~~~~~~~--d 54 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVR---------------------R-ALG---EAVRVVS--S 54 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHh---------------------h-hhc---cCCeeeC--C
Confidence 69999999999999999999888899988874411111000 0 010 0122222 3
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-CCCeEEeecCccccCCCCCEEecCChhhhhHHHH
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPL 165 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-d~p~iV~gVN~~~~~~~~~IIs~~sCtT~~la~~ 165 (250)
.+++ +..+|+|+|||+.....+.+...+++|. .|++-.+.+ .++-+-..+.. ........+--++-.. ....+
T Consensus 55 ~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk-~Vvi~s~~Al~d~~~~~~L~~-~A~~~g~~l~v~sga~-gg~d~ 128 (265)
T PRK13303 55 VDAL---PQRPDLVVECAGHAALKEHVVPILKAGI-DCAVISVGALADEALRERLEQ-AAEAGGARLHLLSGAI-GGIDA 128 (265)
T ss_pred HHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCC-CEEEeChHHhcCHHHHHHHHH-HHHHCCCEEEEeChHh-hCHHH
Confidence 4444 2368999999999888899999999996 455534431 11100000000 0111111111122221 33444
Q ss_pred HHHHHhhcCeeEEEEEeeeccC
Q 025639 166 AKVIHDKFGIVEGLMTTVHSIT 187 (250)
Q Consensus 166 l~~L~~~fgI~~~~vtTiha~s 187 (250)
++.. +..+++.+.+++.+.-.
T Consensus 129 l~~~-~~g~~~~v~~~~~k~p~ 149 (265)
T PRK13303 129 LAAA-KEGGLDEVTYTGRKPPK 149 (265)
T ss_pred HHHH-HhCCceEEEEEEecChh
Confidence 5442 34679999888776543
No 49
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.91 E-value=2e-05 Score=72.51 Aligned_cols=88 Identities=26% Similarity=0.351 Sum_probs=61.9
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
++||||+|+|.||+.+++++.+++++|++++-+. .+++.+. . .+ .++...
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr-~~~~~~~---------------------~-~~-------~v~~~~ 52 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSR-RGAETLD---------------------T-ET-------PVYAVA 52 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcC-CcHHHHh---------------------h-cC-------CccccC
Confidence 4899999999999999999999989999999876 2222110 0 00 011111
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEe
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis 127 (250)
+.+.+ . .++|+|+-|++.....+.+...+++|. .||-+
T Consensus 53 d~~e~--l-~~iDVViIctPs~th~~~~~~~L~aG~-NVV~s 90 (324)
T TIGR01921 53 DDEKH--L-DDVDVLILCMGSATDIPEQAPYFAQFA-NTVDS 90 (324)
T ss_pred CHHHh--c-cCCCEEEEcCCCccCHHHHHHHHHcCC-CEEEC
Confidence 11111 1 368999999999999999999999996 55554
No 50
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.78 E-value=4.7e-05 Score=68.17 Aligned_cols=95 Identities=23% Similarity=0.321 Sum_probs=62.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
|||+|+| +|++|+.+++.+.++++++++++-|. .+++.. .+| .+.+. + +.-.| +.++ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~-~~~~~~----~~~--~~~~~--------~--~~~~g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFER-HGSSLQ----GTD--AGELA--------G--IGKVG--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec-CCcccc----CCC--HHHhc--------C--cCcCC--ceee--C
Confidence 7999999 89999999999998889999999874 122110 011 01000 0 00001 2332 2
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEE
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvi 126 (250)
+++.+. ..+|+|+|+|......+.+...+++|. .+|+
T Consensus 61 d~~~l~---~~~DvVIdfT~p~~~~~~~~~al~~g~-~vVi 97 (266)
T TIGR00036 61 DLEAVE---TDPDVLIDFTTPEGVLNHLKFALEHGV-RLVV 97 (266)
T ss_pred CHHHhc---CCCCEEEECCChHHHHHHHHHHHHCCC-CEEE
Confidence 444441 358999999988888899999999996 4555
No 51
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.75 E-value=0.00013 Score=67.60 Aligned_cols=35 Identities=34% Similarity=0.657 Sum_probs=31.0
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCC---------CceEEEeeCC
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDP 39 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~---------~~~vvaind~ 39 (250)
|++||||.|+|.||+.+++.+.+++ +++|++|.|.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 7899999999999999999988652 6999999875
No 52
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.73 E-value=7.5e-06 Score=65.04 Aligned_cols=91 Identities=31% Similarity=0.371 Sum_probs=54.9
Q ss_pred eeEEEEcC-ChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 7 ~kVaI~G~-G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
|||+|+|+ |++||.+++.+.++++++++++-+...++. ..-|. |.+. +. ....+.++ .
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~-----~g~d~--g~~~-------~~-----~~~~~~v~--~ 59 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAK-----VGKDV--GELA-------GI-----GPLGVPVT--D 59 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTT-----TTSBC--HHHC-------TS-----ST-SSBEB--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccc-----ccchh--hhhh-------Cc-----CCcccccc--h
Confidence 69999996 999999999999988999999988722110 00010 1111 00 01112222 2
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCC
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Ga 121 (250)
+.+++. ..+|+++|.|......+.++.+++.|.
T Consensus 60 ~l~~~~---~~~DVvIDfT~p~~~~~~~~~~~~~g~ 92 (124)
T PF01113_consen 60 DLEELL---EEADVVIDFTNPDAVYDNLEYALKHGV 92 (124)
T ss_dssp -HHHHT---TH-SEEEEES-HHHHHHHHHHHHHHT-
T ss_pred hHHHhc---ccCCEEEEcCChHHhHHHHHHHHhCCC
Confidence 333322 148999999976666778888888886
No 53
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.70 E-value=0.00014 Score=63.56 Aligned_cols=143 Identities=24% Similarity=0.260 Sum_probs=86.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC-CceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~-~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
++|+|+|+|+||+.+++.+.+.+ +||++++.|. +.+..-.+. . + +.++.. .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~--~~ek~~~~~--~------------~-------~~~~~~--s--- 52 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR--DEEKAKELE--A------------S-------VGRRCV--S--- 52 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecC--CHHHHHHHH--h------------h-------cCCCcc--c---
Confidence 47999999999999999988653 6999999886 443322222 0 1 111111 1
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCC-CCCCeEEeecCcccc----CCCCCEEecCChhhh
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS-KDAPMFVVGVNEKEY----KPELDIVSNASCTTN 160 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s-~d~p~iV~gVN~~~~----~~~~~IIs~~sCtT~ 160 (250)
+.+++- .++|+++||++..--++++++.+++|..-.|+|-.. +|.-+. +.+ .....-|--||-..-
T Consensus 53 ~ide~~---~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~------erl~~lak~~~~rv~~pSGAiG 123 (255)
T COG1712 53 DIDELI---AEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALADEGLR------ERLRELAKCGGARVYLPSGAIG 123 (255)
T ss_pred cHHHHh---hccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccChHHH------HHHHHHHhcCCcEEEecCccch
Confidence 122221 278999999998888899999999998766666542 221111 111 011223333444333
Q ss_pred hHHHHHHHHHhhcCeeEEEEEeeeccCC
Q 025639 161 CLAPLAKVIHDKFGIVEGLMTTVHSITA 188 (250)
Q Consensus 161 ~la~~l~~L~~~fgI~~~~vtTiha~s~ 188 (250)
+|- +|+.+ +.-+|+++..||.-....
T Consensus 124 GlD-~l~aa-r~g~i~~V~lttrKpp~~ 149 (255)
T COG1712 124 GLD-ALAAA-RVGGIEEVVLTTRKPPAE 149 (255)
T ss_pred hHH-HHHHh-hcCCeeEEEEEeecChHH
Confidence 332 22222 225799999999887763
No 54
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.64 E-value=0.00029 Score=62.88 Aligned_cols=101 Identities=27% Similarity=0.286 Sum_probs=64.5
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeE-ECCEEEEEE
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLL-FGEKPVAVF 82 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~-~~g~~i~v~ 82 (250)
|+|||+|+| .||+||.+++++.+.+++++++.-+...++ ..|+ ..+ .+. .+-..+.++
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~-----------~~g~--------d~g-e~~g~~~~gv~v~ 60 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSL-----------SLGS--------DAG-ELAGLGLLGVPVT 60 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCcc-----------cccc--------chh-hhccccccCceee
Confidence 458999999 899999999999999999999887651111 0111 001 111 111123333
Q ss_pred ecCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCC
Q 025639 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (250)
Q Consensus 83 ~~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s 130 (250)
. ++. -.+.+.|+++|-|-...+.+.++..++.|.+-||=|...
T Consensus 61 ~--~~~---~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf 103 (266)
T COG0289 61 D--DLL---LVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGF 103 (266)
T ss_pred c--chh---hcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCCC
Confidence 1 221 223478999999988888999999999996443334443
No 55
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.64 E-value=0.00019 Score=64.43 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=60.6
Q ss_pred ceeEEEEcCChHHHHHHHHHHcC-CCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 6 KIKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~-~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
++||||+|+|+||+.+++.+... +.+++++|.+. +++....+. ..+|. . ..+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr--~~~~a~~~a---~~~g~----------~----------~~~-- 58 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR--DPQRHADFI---WGLRR----------P----------PPV-- 58 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC--CHHHHHHHH---HhcCC----------C----------ccc--
Confidence 58999999999999999998873 67999999886 443221111 00000 0 001
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEE
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvi 126 (250)
.+++++.. ++|+|++|++...-.+.+...+++|. .+++
T Consensus 59 ~~~eell~---~~D~Vvi~tp~~~h~e~~~~aL~aGk-~Vi~ 96 (271)
T PRK13302 59 VPLDQLAT---HADIVVEAAPASVLRAIVEPVLAAGK-KAIV 96 (271)
T ss_pred CCHHHHhc---CCCEEEECCCcHHHHHHHHHHHHcCC-cEEE
Confidence 12333322 57999999998888889899999985 4444
No 56
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.50 E-value=0.00015 Score=69.24 Aligned_cols=93 Identities=22% Similarity=0.342 Sum_probs=57.6
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCC---------CceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE 76 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~---------~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g 76 (250)
++||||+|+|.||+.+++.+.+++ ++++++|.+. +++.. . + +...+
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~--~~~~~------~--------------~---~~~~~ 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR--DLEKD------R--------------G---VDLPG 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC--Chhhc------c--------------C---CCCcc
Confidence 489999999999999999887652 5899999875 22100 0 0 00000
Q ss_pred EEEEEEecCCCCCCCcccCCccEEEeecCCC-CCHHHHHHHHHCCCCEEEEeCC
Q 025639 77 KPVAVFGFRNPEEIPWAKTGAEYVVESTGVF-TDKDKAAAHLKGGAKKVVISAP 129 (250)
Q Consensus 77 ~~i~v~~~~~p~~i~w~~~~vdiV~~~tg~~-~~~~~a~~~~~~Gak~vvis~~ 129 (250)
..++ .+++++ ..+.++|+|+||+|.. ...++...++++|. .||..++
T Consensus 58 --~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVtaNK 105 (426)
T PRK06349 58 --ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK-HVVTANK 105 (426)
T ss_pred --ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEEcCH
Confidence 0111 123222 1234789999999763 34677778899994 5544444
No 57
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.47 E-value=0.00037 Score=53.83 Aligned_cols=94 Identities=31% Similarity=0.457 Sum_probs=65.8
Q ss_pred eeEEEEcCChHHHHHHHHHHcC-CCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 7 IKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~-~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
|||||+|+|.+|+..++.+.+. +++++++|.|+ +++...... ..+ + + + .+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~--~~~~~~~~~---~~~------------~--~-----~--~~~-- 52 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP--DPERAEAFA---EKY------------G--I-----P--VYT-- 52 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS--SHHHHHHHH---HHT------------T--S-----E--EES--
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC--CHHHHHHHH---HHh------------c--c-----c--chh--
Confidence 6899999999999999888877 78999999987 444222111 000 0 0 0 111
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCC
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s 130 (250)
+.+++. .+.++|+|+-||+.....+.+...+++|. .|++.-|.
T Consensus 53 ~~~~ll-~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 53 DLEELL-ADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp SHHHHH-HHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHHHH-HhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 222221 22368999999999999999999999996 77777664
No 58
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.47 E-value=0.00026 Score=63.01 Aligned_cols=87 Identities=28% Similarity=0.368 Sum_probs=58.5
Q ss_pred eeEEEEcC-ChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 7 ~kVaI~G~-G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
|||+|+|. |++|+.+++.+.++++++++++.|. +++.. . . . +. . .+.++ .
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~--~~~~~-------------~-~---~-~~--~-----~i~~~--~ 52 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDR--PGSPL-------------V-G---Q-GA--L-----GVAIT--D 52 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec--CCccc-------------c-c---c-CC--C-----Ccccc--C
Confidence 69999995 9999999999988888999999876 22100 0 0 0 00 0 11111 1
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEE
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvi 126 (250)
+.+++- . ++|+|+++|......+.+...+++|. .+|+
T Consensus 53 dl~~ll-~--~~DvVid~t~p~~~~~~~~~al~~G~-~vvi 89 (257)
T PRK00048 53 DLEAVL-A--DADVLIDFTTPEATLENLEFALEHGK-PLVI 89 (257)
T ss_pred CHHHhc-c--CCCEEEECCCHHHHHHHHHHHHHcCC-CEEE
Confidence 333321 1 58999999977667888899999996 4454
No 59
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.46 E-value=0.00033 Score=62.62 Aligned_cols=89 Identities=26% Similarity=0.387 Sum_probs=60.7
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC-CceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~-~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
|||||+|+|+||+.+++.+.+.+ .++++++.|. +++....+.+ . ++ ..++ .
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~--~~~~a~~~a~-----------------~----~~---~~~~--~ 53 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR--NLEKAENLAS-----------------K----TG---AKAC--L 53 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC--CHHHHHHHHH-----------------h----cC---CeeE--C
Confidence 69999999999999999988764 6999999887 4432222210 0 00 0111 1
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEe
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis 127 (250)
+.+++. .++|+|++|++...-.+.++..+++|. .|++.
T Consensus 54 ~~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk-~Vvv~ 91 (265)
T PRK13304 54 SIDELV---EDVDLVVECASVNAVEEVVPKSLENGK-DVIIM 91 (265)
T ss_pred CHHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCC-CEEEE
Confidence 333333 168999999988888888888899885 45553
No 60
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.44 E-value=0.00014 Score=67.28 Aligned_cols=108 Identities=26% Similarity=0.382 Sum_probs=59.5
Q ss_pred CceeEEEEcCChHHHHHHHHHHcC--------C-CceEEEeeCCCCChhHHhhhhcccccccc-CCCcceEE--eCCeee
Q 025639 5 KKIKIGINGFGRIGRLVARVALQR--------D-DVELVAVNDPFISTDYMTYMFKYDSVHGQ-WKHNELKV--KDEKTL 72 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~--------~-~~~vvaind~~~~~~~~a~ll~ydS~~G~-~~~~~v~~--~~~~~l 72 (250)
|++||+|.|||.||+.+++.|.++ . ++.|++|.|... ..|+. .|- .. .-.+. +.+ .+
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~--------~~~~~-~Gid~~-~l~~~~~~~~-~~ 69 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSG--------TIWLP-EDIDLR-EAKEVKENFG-KL 69 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCc--------cccCC-CCCChH-HHHHhhhccC-ch
Confidence 679999999999999999998763 1 488999987511 11111 010 00 00000 001 01
Q ss_pred E-ECCEEEEEEecCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeC
Q 025639 73 L-FGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (250)
Q Consensus 73 ~-~~g~~i~v~~~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~ 128 (250)
. +. ...... ..+++++ +.+..+|+|+|+++.....+.....++.|. .|+++
T Consensus 70 ~~~~-~~~~~~-~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~--~VVta 121 (336)
T PRK08374 70 SNWG-NDYEVY-NFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGK--SVVTS 121 (336)
T ss_pred hhcc-cccccc-CCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCC--cEEEC
Confidence 0 00 000000 0012221 233479999999987777777788888986 44543
No 61
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.31 E-value=0.00039 Score=64.72 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=29.3
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCC---------CceEEEeeCC
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDP 39 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~---------~~~vvaind~ 39 (250)
|+++|+|.|||.||+.++++|.++. ++.|++|.+.
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 6789999999999999999987542 4788888764
No 62
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.30 E-value=0.00081 Score=62.11 Aligned_cols=33 Identities=36% Similarity=0.663 Sum_probs=28.7
Q ss_pred eeEEEEcCChHHHHHHHHHHcC-------CCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQR-------DDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~-------~~~~vvaind~ 39 (250)
|||+|.|||.||+.+++.|.++ .++.+++|.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 4899999999999999998874 35899999876
No 63
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=97.25 E-value=0.0013 Score=61.85 Aligned_cols=112 Identities=20% Similarity=0.238 Sum_probs=66.2
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCC-CceEEEeeCCCCChhHHhhhhc-cccccccCCCcceEEeCCe---eeE--ECCEE
Q 025639 7 IKIGING-FGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFK-YDSVHGQWKHNELKVKDEK---TLL--FGEKP 78 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~-~~~vvaind~~~~~~~~a~ll~-ydS~~G~~~~~~v~~~~~~---~l~--~~g~~ 78 (250)
.||+|+| ||.||++-++.+..++ .|+|+++..- .+.+.+..+.+ |...+ +-..++. .+. +.+..
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~-~n~~~l~~q~~~f~p~~-------v~i~~~~~~~~l~~~l~~~~ 73 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAG-KNVELLAEQAREFRPKY-------VVVADEEAAKELKEALAAAG 73 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHHHHHhCCCE-------EEEcCHHHHHHHHHhhccCC
Confidence 4899999 9999999999998776 5999999742 35554443331 22111 1111110 010 11112
Q ss_pred EEEEecCC-CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeC
Q 025639 79 VAVFGFRN-PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (250)
Q Consensus 79 i~v~~~~~-p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~ 128 (250)
++++...+ ..++- ...++|+|+.+.+.+...+..-.++++| |+|.+.|
T Consensus 74 ~~v~~G~~~~~~l~-~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaLAN 122 (385)
T PRK05447 74 IEVLAGEEGLCELA-ALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIALAN 122 (385)
T ss_pred ceEEEChhHHHHHh-cCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEEeC
Confidence 23333221 22211 1126999999999998888888889999 4555533
No 64
>PLN02775 Probable dihydrodipicolinate reductase
Probab=97.17 E-value=0.0012 Score=59.90 Aligned_cols=95 Identities=25% Similarity=0.190 Sum_probs=60.7
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEe
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~ 83 (250)
|.+||.||| .|++|+.+.+++.+ ++|++|+..+....- ++- .+.+.|..++++.
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~-----------------------~~~-~~~~~g~~v~~~~ 64 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAG-----------------------VGV-TVEVCGVEVRLVG 64 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEecccccc-----------------------ccc-cceeccceeeeec
Confidence 458999999 99999999999998 789999987651100 001 1223333455542
Q ss_pred cCCCCCCC--cccCCcc-EEEeecCCCCCHHHHHHHHHCCCCEE
Q 025639 84 FRNPEEIP--WAKTGAE-YVVESTGVFTDKDKAAAHLKGGAKKV 124 (250)
Q Consensus 84 ~~~p~~i~--w~~~~vd-iV~~~tg~~~~~~~a~~~~~~Gak~v 124 (250)
..|.+..- -.....| +++|-|-.....+..+.+++.|.+-|
T Consensus 65 ~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~V 108 (286)
T PLN02775 65 PSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFV 108 (286)
T ss_pred CccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEE
Confidence 22222211 0011468 88888877777788888888887543
No 65
>PRK11579 putative oxidoreductase; Provisional
Probab=97.14 E-value=0.0025 Score=58.78 Aligned_cols=93 Identities=27% Similarity=0.410 Sum_probs=63.7
Q ss_pred ceeEEEEcCChHHHH-HHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~-~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
++||||+|+|.||+. .++++...+++++++|.|. +++..+. + |. + .+++.
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~--~~~~~~~--~-------~~--------~---------~~~~~- 54 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS--DATKVKA--D-------WP--------T---------VTVVS- 54 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC--CHHHHHh--h-------CC--------C---------CceeC-
Confidence 489999999999985 5677777778999999987 4432110 0 10 0 01111
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCC
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s 130 (250)
+.+++- .+.++|+|+-||+.....+.+...+++| |.|++--|-
T Consensus 55 -~~~ell-~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (346)
T PRK11579 55 -EPQHLF-NDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVVDKPF 97 (346)
T ss_pred -CHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEeCCC
Confidence 222221 1236899999999999999999999999 477776664
No 66
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.02 E-value=0.00018 Score=56.04 Aligned_cols=85 Identities=26% Similarity=0.298 Sum_probs=49.4
Q ss_pred cCChHHHHHHHHHHcCC---CceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCCCCC
Q 025639 13 GFGRIGRLVARVALQRD---DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEE 89 (250)
Q Consensus 13 G~G~IGr~~lr~l~~~~---~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~p~~ 89 (250)
|+|.||+.+++.+.++. ++++++|.+.. . ++..+. . ....+ .... .+.++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~------~~~~~~-----~----~~~~~-~~~~----------~~~~~ 53 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-M------LISKDW-----A----ASFPD-EAFT----------TDLEE 53 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-E------EEETTH-----H----HHHTH-SCEE----------SSHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-c------hhhhhh-----h----hhccc-cccc----------CCHHH
Confidence 89999999999999875 69999998871 0 000000 0 00001 0111 11211
Q ss_pred -CCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeC
Q 025639 90 -IPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (250)
Q Consensus 90 -i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~ 128 (250)
+.| .+.|+|+|||+.....++.+..++.|. -||++
T Consensus 54 ~~~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 54 LIDD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp HHTH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred HhcC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 111 168999999998877888889999996 45554
No 67
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0023 Score=56.76 Aligned_cols=175 Identities=19% Similarity=0.241 Sum_probs=92.6
Q ss_pred ceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 6 KIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 6 ~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
.+|||..| -|--|+.+++++.++|+||+..+..- .++ ---++ + |.+..+..++ +...
T Consensus 19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssr--el~--Gqkl~-~-----ytk~eiqy~~---lst~--------- 76 (340)
T KOG4354|consen 19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSR--ELA--GQKLE-V-----YTKLEIQYAD---LSTV--------- 76 (340)
T ss_pred CceEEEEeccccchhhHHHHhcCCCceEEEeeehh--hhc--CCccc-C-----cchhheeecc---cchh---------
Confidence 38999999 99999999999999999997777532 000 00000 1 1111111111 1111
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC--CCC--eEE---eecCc-cccCCCCCEEecCC
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAP--MFV---VGVNE-KEYKPELDIVSNAS 156 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~--d~p--~iV---~gVN~-~~~~~~~~IIs~~s 156 (250)
|...+. ....+|..+.+.+...-+.+......+.-|-++|+-+.. -.| -.+ ||.|+ +++. +.+.|+||.
T Consensus 77 -D~~kle-e~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-na~~iaNPG 153 (340)
T KOG4354|consen 77 -DAVKLE-EPHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-NARLIANPG 153 (340)
T ss_pred -hHHHhh-cCCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-hhhhccCCC
Confidence 111110 012466666777665555554433333345567754432 134 333 46674 3344 457899999
Q ss_pred hhhhhH----HHHHHHHHhhcCeeEEEEEeeeccCCccccccCCCCCCcccccccccccccCC
Q 025639 157 CTTNCL----APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS 215 (250)
Q Consensus 157 CtT~~l----a~~l~~L~~~fgI~~~~vtTiha~s~~q~~~D~~~~~d~~~~r~~~~NiiP~~ 215 (250)
|-.+.. .|+||.+.- ..+ +-.+-.|||+.. +|..++ ...-++.|+||+.
T Consensus 154 CYaTgsQl~l~Pllk~i~g---~p~--ifgvSGySGAGt---kpspkN--d~~~l~nnlipY~ 206 (340)
T KOG4354|consen 154 CYATGSQLPLVPLLKAILG---KPE--IFGVSGYSGAGT---KPSPKN--DYSELANNLIPYG 206 (340)
T ss_pred cccccCcccchHHHHHhcC---Ccc--eeeeccccCCCC---CCCCcc--CHHHHhcCCcccc
Confidence 977654 555555432 222 223334555531 232222 2346889999984
No 68
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.75 E-value=0.0049 Score=57.01 Aligned_cols=35 Identities=31% Similarity=0.653 Sum_probs=29.5
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCC---------CceEEEeeCC
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDP 39 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~---------~~~vvaind~ 39 (250)
|++||+|.|||.||+.++|+|.++. ++++++|.+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 5699999999999999999998752 4788888765
No 69
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.67 E-value=0.0065 Score=55.18 Aligned_cols=97 Identities=26% Similarity=0.285 Sum_probs=64.1
Q ss_pred CceeEEEEcCChHHH-HHHHHHHcCCC-ceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEE
Q 025639 5 KKIKIGINGFGRIGR-LVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (250)
Q Consensus 5 m~~kVaI~G~G~IGr-~~lr~l~~~~~-~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~ 82 (250)
|++||||+|+|.+++ ..+..+.+.+. ++++++.|. +++....+. ..|| +. ..+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~--~~~~a~~~a---~~~~--------------~~------~~~ 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR--DPERAEAFA---EEFG--------------IA------KAY 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC--CHHHHHHHH---HHcC--------------CC------ccc
Confidence 468999999997765 57888887766 799999887 554322211 1111 00 111
Q ss_pred ecCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCC
Q 025639 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (250)
Q Consensus 83 ~~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s 130 (250)
. +.+++- .+.++|+|+=||+.....+.+..++++|. .|++--|-
T Consensus 57 ~--~~~~ll-~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKPl 100 (342)
T COG0673 57 T--DLEELL-ADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKPL 100 (342)
T ss_pred C--CHHHHh-cCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCCC
Confidence 1 122211 11258999999999999999999999995 77776663
No 70
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.65 E-value=0.0069 Score=52.51 Aligned_cols=72 Identities=21% Similarity=0.327 Sum_probs=52.2
Q ss_pred CccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCC-CCCeEEeecCccc-cCC-CCCEEecCChhhhhHHHHHHHHHhh
Q 025639 96 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKE-YKP-ELDIVSNASCTTNCLAPLAKVIHDK 172 (250)
Q Consensus 96 ~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~-d~p~iV~gVN~~~-~~~-~~~IIs~~sCtT~~la~~l~~L~~~ 172 (250)
++|+|||+|........+.++.++|.+ .|+-..+ =-|-+||-+|.+. ++. +-+.|. |-..+-.|++....+.
T Consensus 71 di~lvfdatsa~~h~~~a~~~ae~gi~--~idltpaaigp~vvp~~n~~eh~~a~nvnmvt---cggqatipiv~avsrv 145 (310)
T COG4569 71 DIDLVFDATSAGAHVKNAAALAEAGIR--LIDLTPAAIGPYVVPVVNLEEHVDALNVNMVT---CGGQATIPIVAAVSRV 145 (310)
T ss_pred CcceEEeccccchhhcchHhHHhcCCc--eeecchhccCCeeccccchHHhcCCCCcceEe---ecCcccchhhhhhhhh
Confidence 689999999999999999999999983 4655443 3699999999865 332 445664 5555555666665553
No 71
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=96.65 E-value=0.007 Score=58.06 Aligned_cols=112 Identities=15% Similarity=0.215 Sum_probs=66.0
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCC-CceEEEeeCCCCChhHHhhhhc-cccccccCCCcceEEeCCe---eeE--ECCE-
Q 025639 7 IKIGING-FGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFK-YDSVHGQWKHNELKVKDEK---TLL--FGEK- 77 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~-~~~vvaind~~~~~~~~a~ll~-ydS~~G~~~~~~v~~~~~~---~l~--~~g~- 77 (250)
.||+|.| ||.||++.++.+.+++ +|+++++..- .+.+.++...+ |..-+ +-..+.. .+. ..+.
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag-~Ni~lL~~q~~~f~p~~-------v~v~d~~~~~~l~~~l~~~~ 129 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAG-SNVTLLADQVRKFKPKL-------VAVRNESLVDELKEALADLD 129 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCccccEEEEEECC-CCHHHHHHHHHHhCCCE-------EEEcCHHHHHHHHHhhcCCC
Confidence 5999999 8999999999999876 4999999764 56665554321 22111 1111100 000 0110
Q ss_pred -EEEEEec-CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeC
Q 025639 78 -PVAVFGF-RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (250)
Q Consensus 78 -~i~v~~~-~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~ 128 (250)
.++++.. .+..++- ...++|+|+.+.+.+......-.++++| |+|.+.|
T Consensus 130 ~~~~vl~G~egl~~la-~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VALAN 180 (454)
T PLN02696 130 DKPEIIPGEEGIVEVA-RHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIALAN 180 (454)
T ss_pred CCcEEEECHHHHHHHH-cCCCCCEEEEeCccccchHHHHHHHHCC-CcEEEec
Confidence 1223321 1122111 1126899999998887777767888999 5665644
No 72
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.52 E-value=0.012 Score=56.68 Aligned_cols=99 Identities=17% Similarity=0.289 Sum_probs=62.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCC--------ChhHHhhhhcccccc-ccCCCcceEEeCCeeeEECCE
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI--------STDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGEK 77 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~--------~~~~~a~ll~ydS~~-G~~~~~~v~~~~~~~l~~~g~ 77 (250)
.||+|-|||.||+.+++.|.+.. ..||+|.|..+ |++ .|++|-... |... .+.+. .+.+
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~G-akVVavsDs~G~iyn~~GLD~~---~L~~~k~~~~~~l~----~~~~~----~~~~ 300 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLG-AKVVTCSDSSGYVYDEEGIDLE---KLKEIKEVRRGRIS----EYAEE----FGAE 300 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCceEECCCCCCHH---HHHHHHHhcCCchh----hhhhh----cCCe
Confidence 69999999999999999999876 99999988311 333 333332111 1111 01000 0001
Q ss_pred EEEEEecCCCCCCCcccCCccEEEeec-CCCCCHHHHHHHHHCCCCEEEE
Q 025639 78 PVAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVVI 126 (250)
Q Consensus 78 ~i~v~~~~~p~~i~w~~~~vdiV~~~t-g~~~~~~~a~~~~~~Gak~vvi 126 (250)
.. +++++ |. .++||.+.|+ +..++.+.+..+.+.+| |+|+
T Consensus 301 ---~i---~~~~i-~~-~d~DVliPaAl~n~It~~~a~~i~~~~a-kiIv 341 (445)
T PRK09414 301 ---YL---EGGSP-WS-VPCDIALPCATQNELDEEDAKTLIANGV-KAVA 341 (445)
T ss_pred ---ec---CCccc-cc-cCCcEEEecCCcCcCCHHHHHHHHHcCC-eEEE
Confidence 11 23332 53 5799999999 77888888888877788 4455
No 73
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.43 E-value=0.028 Score=50.82 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=81.3
Q ss_pred CCCCCceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhcc-cc------ccccCCCcceEEeCCeeeE
Q 025639 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKY-DS------VHGQWKHNELKVKDEKTLL 73 (250)
Q Consensus 1 ~~~~m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~y-dS------~~G~~~~~~v~~~~~~~l~ 73 (250)
|..+|+ ||||+|.|.+|+.++..+.... ++++..+- +++.+....+. .. ..|... .. ..+. .
T Consensus 1 ~~~~~~-~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~---~~~~~~~~~~~i~~~~~~~~~~g~~~-~~--~~~~--~- 69 (286)
T PRK07819 1 MSDAIQ-RVGVVGAGQMGAGIAEVCARAG-VDVLVFET---TEELATAGRNRIEKSLERAVSRGKLT-ER--ERDA--A- 69 (286)
T ss_pred CCCCcc-EEEEEcccHHHHHHHHHHHhCC-CEEEEEEC---CHHHHHHHHHHHHHHHHHHHhcccCC-hh--hHHH--H-
Confidence 455664 8999999999999999988876 88776653 35544332211 00 011111 00 0000 0
Q ss_pred ECCEEEEEEecCCCCCCCcccCCccEEEeecCCCCCHHH-----HHHHH-HCCCCEEEEeCCCC----------CCC---
Q 025639 74 FGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDK-----AAAHL-KGGAKKVVISAPSK----------DAP--- 134 (250)
Q Consensus 74 ~~g~~i~v~~~~~p~~i~w~~~~vdiV~~~tg~~~~~~~-----a~~~~-~~Gak~vvis~~s~----------d~p--- 134 (250)
. ..+++. .+++.+ .++|+|+||...-...+. .+.+. +.++ ++.|++|. ..|
T Consensus 70 ~--~~l~~~--~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~ 139 (286)
T PRK07819 70 L--ARLRFT--TDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRV 139 (286)
T ss_pred H--hCeEee--CCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccE
Confidence 0 123332 234333 389999999865444332 12333 3455 77888764 122
Q ss_pred eEEeecCccccCCCCCEEecCChhhhhHHHHHHHHHhhcCe
Q 025639 135 MFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 175 (250)
Q Consensus 135 ~iV~gVN~~~~~~~~~IIs~~sCtT~~la~~l~~L~~~fgI 175 (250)
+-+--.|+-.+.+--.|+..+.++...+..+...+.+..|-
T Consensus 140 ~g~hf~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk 180 (286)
T PRK07819 140 LGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGK 180 (286)
T ss_pred EEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCC
Confidence 12223343332222346666677767666666555555553
No 74
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=96.31 E-value=0.0076 Score=54.37 Aligned_cols=89 Identities=24% Similarity=0.212 Sum_probs=55.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEe-eCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAV-NDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvai-nd~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
+||.||| +|++||.+.+++.. ++|++|+. -+. .. . .++ ...+.|..+++...
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~---~~-----~----------------~~~-~~~~~g~~v~v~~~ 54 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGG---EE-----E----------------AEN-EAEVAGKEILLHGP 54 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccc---cc-----c----------------ccc-hhhhcccceeeecc
Confidence 5899999 99999999999888 67999986 222 00 0 000 11223334444211
Q ss_pred ----CCCCCCCcccCCcc-EEEeecCCCCCHHHHHHHHHCCCCE
Q 025639 85 ----RNPEEIPWAKTGAE-YVVESTGVFTDKDKAAAHLKGGAKK 123 (250)
Q Consensus 85 ----~~p~~i~w~~~~vd-iV~~~tg~~~~~~~a~~~~~~Gak~ 123 (250)
.+++.+. +...| +++|-|-.....+.++.+++.|..-
T Consensus 55 ~~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~ 96 (275)
T TIGR02130 55 SEREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIPF 96 (275)
T ss_pred ccccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCCE
Confidence 1222222 11267 8899887777778888888888743
No 75
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.22 E-value=0.038 Score=52.26 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=62.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
+||-|.|.|.||+.+++.|..+.+.+|...... ++.++... ++..++.. .+.++- .|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs---~~~~~~i~--~~~~~~v~----------~~~vD~--------~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS---KEKCARIA--ELIGGKVE----------ALQVDA--------AD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC---HHHHHHHH--hhccccce----------eEEecc--------cC
Confidence 689999999999999999998877776655443 55555443 22211111 122211 11
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCC
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~ 129 (250)
.+.+.=--.+.|+||.|.+.+.+..-.+..++.|. -+++.+
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv--~yvDts 99 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGV--DYVDTS 99 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCC--CEEEcc
Confidence 11110001256999999999999999889999998 345444
No 76
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.20 E-value=0.088 Score=46.16 Aligned_cols=129 Identities=19% Similarity=0.273 Sum_probs=71.5
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCC--------ChhHHhhhhccccccccCCCcceEEeCCeeeEECCE
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI--------STDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK 77 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~--------~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~ 77 (250)
.+||+|.|||.||+.+++.|.+.. ..+++|.|... |++ .++++-..+|... .+.+
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g-~~vv~v~D~~g~~~~~~Gld~~---~l~~~~~~~g~l~------------~~~~- 93 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAG-AKVVAVSDSDGTIYNPDGLDVP---ALLAYKKEHGSVL------------GFPG- 93 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCeEECCCCCCHH---HHHHHHHhcCCcc------------cCCC-
Confidence 479999999999999999998875 99999998621 222 2332211111111 0100
Q ss_pred EEEEEecCCCCCCCcccCCccEEEeec-CCCCCHHHHHHHHHCCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEecCC
Q 025639 78 PVAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNAS 156 (250)
Q Consensus 78 ~i~v~~~~~p~~i~w~~~~vdiV~~~t-g~~~~~~~a~~~~~~Gak~vvis~~s~d~p~iV~gVN~~~~~~~~~IIs~~s 156 (250)
...+ +++++ |.. ++|++++|+ +..++.+.+++. .| ++|+-+ ++-|+- ++.- +.+. ++.|+=.|.
T Consensus 94 ~~~~----~~~~i-~~~-~~Dvlip~a~~~~i~~~~~~~l---~a-~~I~eg--AN~~~t-~~a~-~~L~-~rGi~~~PD 158 (227)
T cd01076 94 AERI----TNEEL-LEL-DCDILIPAALENQITADNADRI---KA-KIIVEA--ANGPTT-PEAD-EILH-ERGVLVVPD 158 (227)
T ss_pred ceec----CCccc-eee-cccEEEecCccCccCHHHHhhc---ee-eEEEeC--CCCCCC-HHHH-HHHH-HCCCEEECh
Confidence 0001 23332 543 799999999 666676666533 35 344422 233432 3221 1222 456666677
Q ss_pred hhhhhHHHHH
Q 025639 157 CTTNCLAPLA 166 (250)
Q Consensus 157 CtT~~la~~l 166 (250)
..+|+=-.+.
T Consensus 159 ~~aNaGGvi~ 168 (227)
T cd01076 159 ILANAGGVTV 168 (227)
T ss_pred HHhcCcchhh
Confidence 7666654443
No 77
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.05 E-value=0.089 Score=45.83 Aligned_cols=33 Identities=24% Similarity=0.545 Sum_probs=30.3
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.+||+|-|||.||+.+++.|.+.. ..+|+|.|.
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G-~~vV~vsD~ 55 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEG-GKVLAVSDP 55 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CEEEEEEcC
Confidence 379999999999999999999886 899999997
No 78
>PRK10206 putative oxidoreductase; Provisional
Probab=95.96 E-value=0.026 Score=52.24 Aligned_cols=94 Identities=19% Similarity=0.230 Sum_probs=60.5
Q ss_pred eeEEEEcCChHHHH-HHHHHHcC-CCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 7 IKIGINGFGRIGRL-VARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 7 ~kVaI~G~G~IGr~-~lr~l~~~-~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
+||||+|+|.+++. .++.+... +.+++++|.|. +++-....-+|. + +.++
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~--~~~~~~~~~~~~----------------------~--~~~~-- 53 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRR--HAKPEEQAPIYS----------------------H--IHFT-- 53 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcC--ChhHHHHHHhcC----------------------C--Cccc--
Confidence 79999999998864 45656443 56999999987 332111111111 0 0111
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCC
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s 130 (250)
.+.+++ ..+.++|.|+-||+.....+.+...+++| |.|++--|-
T Consensus 54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (344)
T PRK10206 54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKPF 97 (344)
T ss_pred CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecCC
Confidence 122222 12237899999999999999999999999 577776564
No 79
>PLN02700 homoserine dehydrogenase family protein
Probab=95.70 E-value=0.023 Score=53.55 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=28.1
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCC--------CceEEEeeCC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRD--------DVELVAVNDP 39 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~--------~~~vvaind~ 39 (250)
+++|+|.|+|.||+.+++.+.++. ++.|++|.++
T Consensus 3 ~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 3 KIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred EEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 589999999999999999877532 3778888775
No 80
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.65 E-value=0.075 Score=47.51 Aligned_cols=104 Identities=16% Similarity=0.280 Sum_probs=63.6
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCC--------CChhHHhhhhcccccccc-CCCcceEEeCCeeeEECCE
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF--------ISTDYMTYMFKYDSVHGQ-WKHNELKVKDEKTLLFGEK 77 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~--------~~~~~~a~ll~ydS~~G~-~~~~~v~~~~~~~l~~~g~ 77 (250)
.||+|-|||.||+.+++.|.+.. ..+|+|.|.. .|++.+..+++++...+. .. .+. ..+.+
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~G-akvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~----~~~----~~~~~- 108 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELG-AKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVS----EYA----KKYGT- 108 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHH----HHh----hcCCC-
Confidence 69999999999999999999886 9999998841 123333333433322110 00 000 00111
Q ss_pred EEEEEecCCCCCCCcccCCccEEEeec-CCCCCHHHHHHHHHCCCCEEEEe
Q 025639 78 PVAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVVIS 127 (250)
Q Consensus 78 ~i~v~~~~~p~~i~w~~~~vdiV~~~t-g~~~~~~~a~~~~~~Gak~vvis 127 (250)
.+.. +++++ |. .++||.+=|+ +..++.+.++...+.+| |+|+-
T Consensus 109 -a~~~---~~~~~-~~-~~~DIliPcAl~~~I~~~na~~i~~~~a-k~I~E 152 (254)
T cd05313 109 -AKYF---EGKKP-WE-VPCDIAFPCATQNEVDAEDAKLLVKNGC-KYVAE 152 (254)
T ss_pred -CEEe---CCcch-hc-CCCcEEEeccccccCCHHHHHHHHHcCC-EEEEe
Confidence 0111 23332 53 5799999887 77888888887766677 44553
No 81
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.53 E-value=0.047 Score=49.42 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=27.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
|||.|.| +|.||+.+++.|.+++ .+|+++...
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG-YQVRCLVRN 33 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEEcC
Confidence 3899999 9999999999999886 888888653
No 82
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.45 E-value=0.037 Score=58.31 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=62.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCce------------EEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEE
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVE------------LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLF 74 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~------------vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~ 74 (250)
.||+|+|.|+||+..++.|.++++++ +|+|.|. +++....+.+- ++ + +
T Consensus 570 ~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~~------~~-------~---~-- 629 (1042)
T PLN02819 570 QNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL--YLKDAKETVEG------IE-------N---A-- 629 (1042)
T ss_pred CcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC--CHHHHHHHHHh------cC-------C---C--
Confidence 49999999999999999999877666 7888886 44433322210 00 0 0
Q ss_pred CCEEEEEEecCCCCCCC-cccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCC
Q 025639 75 GEKPVAVFGFRNPEEIP-WAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (250)
Q Consensus 75 ~g~~i~v~~~~~p~~i~-w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~ 129 (250)
+.+.+ ...|++++. + -.++|+|+.|++.....+-+..++++|+ -+++..
T Consensus 630 --~~v~l-Dv~D~e~L~~~-v~~~DaVIsalP~~~H~~VAkaAieaGk--Hvv~ek 679 (1042)
T PLN02819 630 --EAVQL-DVSDSESLLKY-VSQVDVVISLLPASCHAVVAKACIELKK--HLVTAS 679 (1042)
T ss_pred --ceEEe-ecCCHHHHHHh-hcCCCEEEECCCchhhHHHHHHHHHcCC--CEEECc
Confidence 11111 001233221 1 0269999999999999999999999996 445443
No 83
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=95.38 E-value=0.015 Score=59.92 Aligned_cols=35 Identities=11% Similarity=0.346 Sum_probs=29.2
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCC--------CceEEEeeCC
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRD--------DVELVAVNDP 39 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~--------~~~vvaind~ 39 (250)
+.++|+|.|+|.||+.+++.|.++. ++.|++|.+.
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s 506 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS 506 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 6789999999999999999987542 4788888764
No 84
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.34 E-value=0.072 Score=49.67 Aligned_cols=114 Identities=22% Similarity=0.328 Sum_probs=61.8
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeee---EECCEEEEEE
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTL---LFGEKPVAVF 82 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l---~~~g~~i~v~ 82 (250)
++|||++|.|..|+-++.....-+-|++++|+|...+....+ ||-.++.-. ..++..+-..+ .-.| ++.++
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A----~~~ag~~~~-~~~e~~~~s~~a~Ai~aG-Ki~vT 90 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRA----YDRAGGPKI-EAVEADDASKMADAIEAG-KIAVT 90 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHH----HHHhcCCcc-cccccchhhHHHHHHhcC-cEEEe
Confidence 599999999999998877666666799999999843332222 465544321 11221110001 0112 33443
Q ss_pred ecCCCCCCCcccCCccEEEeecCCCC-CHHHHHHHHHCCCCEEEEeCC
Q 025639 83 GFRNPEEIPWAKTGAEYVVESTGVFT-DKDKAAAHLKGGAKKVVISAP 129 (250)
Q Consensus 83 ~~~~p~~i~w~~~~vdiV~~~tg~~~-~~~~a~~~~~~Gak~vvis~~ 129 (250)
. |.+.+ .....+|+++|+||.-. ..+.+..++..| |.+|.=|-
T Consensus 91 ~--D~~~i-~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~-KHlVMmNV 134 (438)
T COG4091 91 D--DAELI-IANDLIDVIIDATGVPEVGAKIALEAILHG-KHLVMMNV 134 (438)
T ss_pred c--chhhh-hcCCcceEEEEcCCCcchhhHhHHHHHhcC-CeEEEEEe
Confidence 2 22222 33347999999998632 223333444454 34444333
No 85
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.30 E-value=0.19 Score=45.96 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=27.8
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|++||+|+|.|.+|..+...|.+.. .+|..++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAG-ADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcC-CcEEEEec
Confidence 6689999999999999999998876 66666653
No 86
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.19 E-value=0.027 Score=46.30 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=27.3
Q ss_pred EEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 9 IGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 9 VaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
|.|.| +|.+|+.+++.|.+++ .+|+++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecC
Confidence 68999 9999999999999998 999998765
No 87
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.16 E-value=0.13 Score=47.62 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=53.7
Q ss_pred CCCCCceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEE
Q 025639 1 MAGDKKIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV 79 (250)
Q Consensus 1 ~~~~m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i 79 (250)
|..++.++|-|-| +|-||.-+++.|.+++ ..|.+--....+++...||.+.+.. + +++
T Consensus 1 m~~~~~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~~~~k~~~~L~~l~~a------------~--------~~l 59 (327)
T KOG1502|consen 1 MDQDEGKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDPEDEKKTEHLRKLEGA------------K--------ERL 59 (327)
T ss_pred CCCCCCcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCcchhhhHHHHHhcccC------------c--------ccc
Confidence 4444557999999 9999999999999998 6666655443555555566544421 1 112
Q ss_pred EEEec--CCCCCCCcccCCccEEEeecCC
Q 025639 80 AVFGF--RNPEEIPWAKTGAEYVVESTGV 106 (250)
Q Consensus 80 ~v~~~--~~p~~i~w~~~~vdiV~~~tg~ 106 (250)
+++.. .|+..++=...|+|+||-++..
T Consensus 60 ~l~~aDL~d~~sf~~ai~gcdgVfH~Asp 88 (327)
T KOG1502|consen 60 KLFKADLLDEGSFDKAIDGCDGVFHTASP 88 (327)
T ss_pred eEEeccccccchHHHHHhCCCEEEEeCcc
Confidence 22211 2445555444589999987743
No 88
>PLN02477 glutamate dehydrogenase
Probab=95.16 E-value=0.26 Score=47.01 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=29.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.||+|-|||.||+.+++.|.+.. ..||+|.|.
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~G-akVVaVsD~ 238 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKG-GKIVAVSDI 238 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CEEEEEECC
Confidence 68999999999999999999886 999999987
No 89
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.03 E-value=0.055 Score=46.49 Aligned_cols=95 Identities=22% Similarity=0.230 Sum_probs=54.3
Q ss_pred EEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCCC
Q 025639 9 IGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (250)
Q Consensus 9 VaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~p 87 (250)
|+|.| +|.+|+.++++|... .++|.++... . ....+.-|+.. | - .+.. + .-.|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-~~~V~~l~R~-~-~~~~~~~l~~~---g-----------~-~vv~-~------d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-GFSVRALVRD-P-SSDRAQQLQAL---G-----------A-EVVE-A------DYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TGCEEEEESS-S-HHHHHHHHHHT---T-----------T-EEEE-S-------TT-H
T ss_pred CEEECCccHHHHHHHHHHHhC-CCCcEEEEec-c-chhhhhhhhcc---c-----------c-eEee-c------ccCCH
Confidence 68999 999999999999985 4999998765 1 11112112110 0 0 0100 0 01123
Q ss_pred CCCCcccCCccEEEeecCCCCCH------HHHHHHHHCCCCEEEEeC
Q 025639 88 EEIPWAKTGAEYVVESTGVFTDK------DKAAAHLKGGAKKVVISA 128 (250)
Q Consensus 88 ~~i~w~~~~vdiV~~~tg~~~~~------~~a~~~~~~Gak~vvis~ 128 (250)
+.+.=.-.|+|.||.+++..... .......++|.|++|.|.
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence 33221123899999999865221 233456678999987754
No 90
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.00 E-value=0.037 Score=46.36 Aligned_cols=32 Identities=34% Similarity=0.589 Sum_probs=27.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.+|||+|+|+|||.+++.+..-. ++|++.+..
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~~ 68 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFG-MRVIGYDRS 68 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred CEEEEEEEcCCcCeEeeeeecCC-ceeEEeccc
Confidence 58999999999999999998776 898888754
No 91
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=94.94 E-value=0.14 Score=43.93 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=28.8
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
|||||+| +|.+|..+++-+..|. -|+++|...
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivRn 33 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIVRN 33 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-CeeEEEEeC
Confidence 5899999 9999999999999997 899999754
No 92
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=94.70 E-value=0.074 Score=42.74 Aligned_cols=109 Identities=21% Similarity=0.287 Sum_probs=60.0
Q ss_pred EEEEc-CChHHHHHHHHHHcCC-CceEEEeeCCCCChhHHhhhhc-cccccccCCCcceEEeCCe-------eeEECCEE
Q 025639 9 IGING-FGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFK-YDSVHGQWKHNELKVKDEK-------TLLFGEKP 78 (250)
Q Consensus 9 VaI~G-~G~IGr~~lr~l~~~~-~~~vvaind~~~~~~~~a~ll~-ydS~~G~~~~~~v~~~~~~-------~l~~~g~~ 78 (250)
|+|.| ||.||++.++.+.++| +|+|+++..- .+.+.+....+ |...| +-..+.. .+...+..
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~-~n~~~L~~q~~~f~p~~-------v~i~~~~~~~~l~~~~~~~~~~ 72 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG-SNIEKLAEQAREFKPKY-------VVIADEEAYEELKKALPSKGPG 72 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES-STHHHHHHHHHHHT-SE-------EEESSHHHHHHHHHHHHHTTSS
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC-CCHHHHHHHHHHhCCCE-------EEEcCHHHHHHHHHHhhhcCCC
Confidence 68999 9999999999999887 5999999864 66665554432 21111 1111100 00001112
Q ss_pred EEEEecCC-CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEe
Q 025639 79 VAVFGFRN-PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (250)
Q Consensus 79 i~v~~~~~-p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis 127 (250)
++++...+ ..++- .+.++|+|+.+.-.+...+-.-..+++| |++-+.
T Consensus 73 ~~v~~G~~~l~~~~-~~~~~D~vv~Ai~G~aGL~pt~~Ai~~g-k~iaLA 120 (129)
T PF02670_consen 73 IEVLSGPEGLEELA-EEPEVDIVVNAIVGFAGLKPTLAAIKAG-KDIALA 120 (129)
T ss_dssp SEEEESHHHHHHHH-THTT-SEEEE--SSGGGHHHHHHHHHTT-SEEEE-
T ss_pred CEEEeChHHHHHHh-cCCCCCEEEEeCcccchHHHHHHHHHCC-CeEEEe
Confidence 23332111 11111 1137899999987777777666788888 465554
No 93
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=94.61 E-value=0.029 Score=57.76 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=29.1
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCC---------CceEEEeeCC
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDP 39 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~---------~~~vvaind~ 39 (250)
+.++|+|.|||.||+.++++|.++. ++.|++|.+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 5699999999999999999987541 4788888764
No 94
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=94.61 E-value=0.1 Score=45.00 Aligned_cols=94 Identities=20% Similarity=0.314 Sum_probs=58.1
Q ss_pred eeEEEEcCChHHHHHHHHHH-cCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 7 IKIGINGFGRIGRLVARVAL-QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~-~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
.||+|+|+|.+|+.+++.+. ....++++++-|. +++. .| . . ++|.++ ....
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~--d~~~----------~~-----------~-~--i~g~~v--~~~~ 136 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV--DPEK----------IG-----------T-K--IGGIPV--YHID 136 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC--Chhh----------cC-----------C-E--eCCeEE--cCHH
Confidence 68999999999999988643 3345999998765 2220 01 0 0 122222 1111
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCC
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~ 129 (250)
+..++ ..+.++|+|+.|++.....+.....+++|.+.++...|
T Consensus 137 ~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 137 ELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 22222 13347999999999877666677788899765444344
No 95
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.58 E-value=0.12 Score=45.14 Aligned_cols=99 Identities=27% Similarity=0.290 Sum_probs=58.1
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhc--cccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFK--YDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~--ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
|++.|+|.|++|+.+++.|.+.+ .+++.|.+- ++.+...++ +|. . .+.-++..-.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d---~~~~~~~~~~~~~~--------------~-~v~gd~t~~~~--- 58 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRD---EERVEEFLADELDT--------------H-VVIGDATDEDV--- 58 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcC---HHHHHHHhhhhcce--------------E-EEEecCCCHHH---
Confidence 48999999999999999999886 788888653 443333221 111 0 11111111111
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHH-HHHHHHH-CCCCEEEEeCCCC
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKD-KAAAHLK-GGAKKVVISAPSK 131 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~-~a~~~~~-~Gak~vvis~~s~ 131 (250)
+++.. -.++|+++-+||...... .+..+++ -|.+++|....+.
T Consensus 59 --L~~ag--i~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 59 --LEEAG--IDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred --HHhcC--CCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 12222 126899999998754433 3334444 6888877766553
No 96
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.50 E-value=0.25 Score=47.66 Aligned_cols=103 Identities=16% Similarity=0.322 Sum_probs=65.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCC--------CChhHHhhhhcccccc-ccCCCcceEEeCCeeeEECCE
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF--------ISTDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGEK 77 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~--------~~~~~~a~ll~ydS~~-G~~~~~~v~~~~~~~l~~~g~ 77 (250)
.+|+|-|||.||+..++.|.+.. ..||+|.|.. .|++.+.+++++-..+ |... .+.+. ..|
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~G-akVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~----~~~~~----~~~- 307 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQLG-AKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLK----EYAKH----SST- 307 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHH----hhhhc----cCC-
Confidence 68999999999999999999886 9999999973 1244444444332211 1111 01000 001
Q ss_pred EEEEEecCCCCCCCcccCCccEEEeec-CCCCCHHHHHHHHHCCCCEEEE
Q 025639 78 PVAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVVI 126 (250)
Q Consensus 78 ~i~v~~~~~p~~i~w~~~~vdiV~~~t-g~~~~~~~a~~~~~~Gak~vvi 126 (250)
.+.. ++++ .|. .++||.+=|+ +..++.+.++..++.||| +|+
T Consensus 308 -a~~~---~~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak-~V~ 350 (454)
T PTZ00079 308 -AKYV---PGKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCK-LVA 350 (454)
T ss_pred -cEEe---CCcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCe-EEE
Confidence 0111 1222 375 5899999887 778888998887788994 445
No 97
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.29 E-value=0.072 Score=49.72 Aligned_cols=96 Identities=22% Similarity=0.357 Sum_probs=54.6
Q ss_pred EEEEcCChHHHHHHHHHHcCCCc-eEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCCC
Q 025639 9 IGINGFGRIGRLVARVALQRDDV-ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (250)
Q Consensus 9 VaI~G~G~IGr~~lr~l~~~~~~-~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~p 87 (250)
|.|+|.|.+|+.+++.|.+++++ +++.. +- +.+.+..+.+. . ... .+.. +.+ ...|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va-~r--~~~~~~~~~~~--~-----------~~~-~~~~----~~~-d~~~~ 58 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVA-DR--NPEKAERLAEK--L-----------LGD-RVEA----VQV-DVNDP 58 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEE-ES--SHHHHHHHHT---------------TTT-TEEE----EE---TTTH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEE-EC--CHHHHHHHHhh--c-----------ccc-ceeE----EEE-ecCCH
Confidence 68999999999999999998767 54444 43 45544444311 0 001 1111 011 11122
Q ss_pred CCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeC
Q 025639 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (250)
Q Consensus 88 ~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~ 128 (250)
+++.=--.+.|+|+.|+|.+....-++..+++|+ -.++.
T Consensus 59 ~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD~ 97 (386)
T PF03435_consen 59 ESLAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVDT 97 (386)
T ss_dssp HHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEES
T ss_pred HHHHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceecc
Confidence 2211101367999999999988888889999998 56763
No 98
>PLN00016 RNA-binding protein; Provisional
Probab=94.14 E-value=0.14 Score=47.54 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=29.2
Q ss_pred CceeEEEE----c-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 5 KKIKIGIN----G-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 5 m~~kVaI~----G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
|++||.|. | +|.||+.+++.|.+++ .+|+++...
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~ 89 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRG 89 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecC
Confidence 45789999 8 9999999999999886 788888754
No 99
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.91 E-value=0.36 Score=41.30 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=26.6
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
++|+|.|+|.+|+.+.+.|.+.. .+|+ +.|.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G-~~Vv-v~D~ 59 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG-AKLI-VADI 59 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEE-EEcC
Confidence 58999999999999999999886 7888 4454
No 100
>PRK14030 glutamate dehydrogenase; Provisional
Probab=93.88 E-value=0.54 Score=45.33 Aligned_cols=104 Identities=18% Similarity=0.306 Sum_probs=65.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCC--------CChhHHhhhhccccccccCCCcceEEeCCeeeEECCEE
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF--------ISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP 78 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~--------~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~ 78 (250)
.||+|-|||.||+..++.|.+.. ..||+|+|.. .|++.+.+|++|-..+|... . .... .+.|.
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~G-akvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~-~--~~~~----~~~ga- 299 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELG-AKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIV-A--PYAE----KFPGS- 299 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccH-H--HHHh----cCCCC-
Confidence 68999999999999999998876 8999976542 23343555665533222100 0 0000 11121
Q ss_pred EEEEecCCCCCCCcccCCccEEEeec-CCCCCHHHHHHHHHCCCCEEEE
Q 025639 79 VAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVVI 126 (250)
Q Consensus 79 i~v~~~~~p~~i~w~~~~vdiV~~~t-g~~~~~~~a~~~~~~Gak~vvi 126 (250)
+.. +++++ |. .++||.+=|+ +..++.+.++...+.+|| +|+
T Consensus 300 -~~i---~~~~~-~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak-~V~ 341 (445)
T PRK14030 300 -TFF---AGKKP-WE-QKVDIALPCATQNELNGEDADKLIKNGVL-CVA 341 (445)
T ss_pred -EEc---CCccc-ee-ccccEEeeccccccCCHHHHHHHHHcCCe-EEE
Confidence 111 23332 64 5799999887 888899998888778884 455
No 101
>PRK14031 glutamate dehydrogenase; Provisional
Probab=93.82 E-value=0.31 Score=46.98 Aligned_cols=102 Identities=16% Similarity=0.313 Sum_probs=62.0
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCC--------CChhHHhhhhccccc-cccCCCcceEEeCCeeeEECCE
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF--------ISTDYMTYMFKYDSV-HGQWKHNELKVKDEKTLLFGEK 77 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~--------~~~~~~a~ll~ydS~-~G~~~~~~v~~~~~~~l~~~g~ 77 (250)
.||+|-|||.||...++.|.+.. -.|++|+|.. .+++.+.|+.++... .++.. .+.+. . |
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~G-AkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~----~~~~~----~-g- 297 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLELG-GKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIR----EYAEK----Y-G- 297 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchh----hhHhh----c-C-
Confidence 68999999999999999999876 8999999831 144434333322211 11100 00000 0 1
Q ss_pred EEEEEecCCCCCCCcccCCccEEEeec-CCCCCHHHHHHHHHCCCCEEEE
Q 025639 78 PVAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVVI 126 (250)
Q Consensus 78 ~i~v~~~~~p~~i~w~~~~vdiV~~~t-g~~~~~~~a~~~~~~Gak~vvi 126 (250)
.... ++++ .|. ..+|+.+=|+ +..++.+.++.....|+ ++|+
T Consensus 298 -a~~i---~~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~-~~V~ 340 (444)
T PRK14031 298 -CKYV---EGAR-PWG-EKGDIALPSATQNELNGDDARQLVANGV-IAVS 340 (444)
T ss_pred -CEEc---CCcc-ccc-CCCcEEeecccccccCHHHHHHHHhcCC-eEEE
Confidence 1111 2222 354 4799999887 77788899887766787 3344
No 102
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=93.65 E-value=0.28 Score=43.31 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=26.4
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
||.|.| +|.||+.+++.|.++. +++.++...
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~R~ 32 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLVASRS 32 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEEEeCC
Confidence 478999 9999999999999876 888777654
No 103
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.55 E-value=0.11 Score=48.32 Aligned_cols=103 Identities=26% Similarity=0.336 Sum_probs=65.6
Q ss_pred CCCCCceeEEEEcCChHHHHHHHHHHcCC--CceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEE
Q 025639 1 MAGDKKIKIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP 78 (250)
Q Consensus 1 ~~~~m~~kVaI~G~G~IGr~~lr~l~~~~--~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~ 78 (250)
|...+.+|+||+|.|+|++.++++|..-| +.+|+||.++ +.+ ....+..-| .+. +
T Consensus 1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~--s~~---~A~~fAq~~--------------~~~-~--- 57 (351)
T KOG2741|consen 1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP--SLE---RAKEFAQRH--------------NIP-N--- 57 (351)
T ss_pred CCCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc--cHH---HHHHHHHhc--------------CCC-C---
Confidence 34556799999999999999999998776 7999999988 332 111111111 121 1
Q ss_pred EEEEecCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCC
Q 025639 79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (250)
Q Consensus 79 i~v~~~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s 130 (250)
.+++.. .+++- ++..+|+|.-++..-...|.+-..+..| |.|++--|-
T Consensus 58 ~k~y~s--yEeLa-kd~~vDvVyi~~~~~qH~evv~l~l~~~-K~VL~EKPl 105 (351)
T KOG2741|consen 58 PKAYGS--YEELA-KDPEVDVVYISTPNPQHYEVVMLALNKG-KHVLCEKPL 105 (351)
T ss_pred CccccC--HHHHh-cCCCcCEEEeCCCCccHHHHHHHHHHcC-CcEEecccc
Confidence 111111 11111 1236899988888887888887777777 467675553
No 104
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.54 E-value=0.17 Score=49.57 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=29.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhh
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTY 48 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ 48 (250)
-||||+|.|.+|+.+++.+.... ++|+..+. +++.+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG-~~V~l~D~---~~e~l~~ 45 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAG-HTVLLYDA---RAGAAAA 45 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEeC---CHHHHHH
Confidence 47999999999999999988776 88776653 3554444
No 105
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.35 E-value=0.29 Score=41.97 Aligned_cols=90 Identities=22% Similarity=0.360 Sum_probs=61.0
Q ss_pred ceeEEEEcCChHHHHHHHHHHc-CCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 6 KIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~-~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
+.+|.|+|.|.+||.++.--+. +..|.++++=|. +++ .-|+.. ++ ++|..-
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv--~~~----------~VG~~~--------------~~--v~V~~~ 135 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV--DPD----------KVGTKI--------------GD--VPVYDL 135 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecC--CHH----------HhCccc--------------CC--eeeech
Confidence 4799999999999998876543 456999999776 442 123322 11 333322
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEE
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV 124 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~v 124 (250)
.+.+.+- ++.++|+++-|.++...-+-+....++|.|.+
T Consensus 136 d~le~~v-~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGI 174 (211)
T COG2344 136 DDLEKFV-KKNDVEIAILTVPAEHAQEVADRLVKAGVKGI 174 (211)
T ss_pred HHHHHHH-HhcCccEEEEEccHHHHHHHHHHHHHcCCceE
Confidence 2233221 23489999999998877788888899999763
No 106
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=93.33 E-value=0.16 Score=48.02 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=63.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCC-CceEEEeeCCCCChhHHhhhhc-cccccccCCCcceEEeCCe---eeE--EC--C
Q 025639 7 IKIGING-FGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFK-YDSVHGQWKHNELKVKDEK---TLL--FG--E 76 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~-~~~vvaind~~~~~~~~a~ll~-ydS~~G~~~~~~v~~~~~~---~l~--~~--g 76 (250)
.||+|.| ||.||++.++.+..++ .|+|+++..- .+.+.+....+ |... -+-..+.. .+. .. |
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~-~n~~~L~~q~~~f~p~-------~v~i~d~~~~~~l~~~l~~~~ 73 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAG-KNVALMVEQILEFRPK-------FVAIDDEASLKDLKTMLQQQG 73 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHHHHHcCCC-------EEEEcCHHHHHHHHHHhhcCC
Confidence 4899999 9999999999988776 4999999764 56655544432 2211 11111110 010 01 2
Q ss_pred EEEEEEecCC-CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeC
Q 025639 77 KPVAVFGFRN-PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (250)
Q Consensus 77 ~~i~v~~~~~-p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~ 128 (250)
..++++...+ ..++- ....+|+|+-+.-.+....-.-.++++| |++-+.|
T Consensus 74 ~~~~v~~G~~~l~~l~-~~~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLAN 124 (389)
T TIGR00243 74 SRTEVLVGEEGICEMA-ALEDVDQVMNAIVGAAGLLPTLAAIRAG-KTIALAN 124 (389)
T ss_pred CCcEEEECHHHHHHHH-cCCCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEec
Confidence 1233443221 11111 1126899999886666666555777888 5555544
No 107
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.25 E-value=0.14 Score=42.15 Aligned_cols=30 Identities=30% Similarity=0.537 Sum_probs=24.8
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
+|||++|+|.+|+.+++.|.++. +++.+.|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g-~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG-YEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT-TEEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcC-CeEEeec
Confidence 69999999999999999999886 8877665
No 108
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.07 E-value=0.53 Score=42.59 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=24.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
+||+|+|.|.+|..++..+..++-.+++-+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D 33 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFD 33 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEE
Confidence 6999999999999999988876512665553
No 109
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=93.07 E-value=0.12 Score=47.24 Aligned_cols=30 Identities=37% Similarity=0.516 Sum_probs=25.6
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+|||+|+|+|||.+++.+..-+ ++|.+.+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fg-m~V~~~d 175 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFG-AKVVYYS 175 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcC-CEEEEEC
Confidence 58999999999999999987655 8877764
No 110
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.04 E-value=0.68 Score=41.35 Aligned_cols=30 Identities=33% Similarity=0.526 Sum_probs=25.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.||+|+|.|.+|..++..+..+. ++++.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g-~~V~~~d 33 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG-YDVVMVD 33 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC-CceEEEe
Confidence 48999999999999999998886 6777764
No 111
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.98 E-value=0.14 Score=45.93 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=29.1
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhh
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTY 48 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ 48 (250)
.||+|+|.|.+|..+...+..+. ++|+..+ . +++.+..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G-~~V~l~d-~--~~~~~~~ 42 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG-YDVLLND-V--SADRLEA 42 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CeEEEEe-C--CHHHHHH
Confidence 58999999999999999998876 7876664 3 4554433
No 112
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=92.92 E-value=0.41 Score=37.41 Aligned_cols=83 Identities=19% Similarity=0.148 Sum_probs=54.3
Q ss_pred eEEEEc----CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEe
Q 025639 8 KIGING----FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (250)
Q Consensus 8 kVaI~G----~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~ 83 (250)
+|||+| -+..|+.+++.|.++. +++..||-. ++.. .|.+ ++.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G-~~v~~Vnp~------------~~~i-------------------~G~~--~y~ 47 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAG-YEVYPVNPK------------GGEI-------------------LGIK--CYP 47 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT--EEEEESTT------------CSEE-------------------TTEE---BS
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCC-CEEEEECCC------------ceEE-------------------CcEE--eec
Confidence 699999 4999999999999876 898889743 1221 1211 121
Q ss_pred cCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCC
Q 025639 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (250)
Q Consensus 84 ~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~ 129 (250)
+.++++ ..+|+++-++......+..+...+.|++.+++..+
T Consensus 48 --sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 48 --SLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp --SGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred --cccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 122222 36899999999888888888888899999888654
No 113
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.90 E-value=0.56 Score=43.07 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=21.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCce
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVE 32 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~ 32 (250)
+||+|+|.|.+|..+...+..++-.+
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~ 31 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGD 31 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCe
Confidence 59999999999999998887665235
No 114
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.89 E-value=0.47 Score=44.51 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=25.7
Q ss_pred ceeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 6 KIKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 6 ~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
..||+|+| +|.+|+.+.+.|.... +++..++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~d 129 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG-YQVRILE 129 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCC-CeEEEeC
Confidence 47999999 9999999999998876 6655554
No 115
>PRK06487 glycerate dehydrogenase; Provisional
Probab=92.86 E-value=0.15 Score=46.81 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=26.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.+|||+|+|+|||.+++.+.... ++|++.+.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fg-m~V~~~~~ 179 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFG-MRVLIGQL 179 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCC-CEEEEECC
Confidence 48999999999999999987665 88877653
No 116
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=92.78 E-value=0.49 Score=44.11 Aligned_cols=94 Identities=18% Similarity=0.179 Sum_probs=56.6
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCC-CceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~-~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
++||||+|+ .+|+..++++.+.+ ++++++|.|. +++-...+- ..|| + ..+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~--~~erA~~~A---~~~g--------------i-------~~y-- 53 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQ--GSERSRALA---HRLG--------------V-------PLY-- 53 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcC--CHHHHHHHH---HHhC--------------C-------Ccc--
Confidence 479999999 57999999998877 7999999987 443221111 1111 0 011
Q ss_pred CCCCCCCcccCCccEEEee--cCCCCCHHHHHHHHHCCCCEEEEeCCC
Q 025639 85 RNPEEIPWAKTGAEYVVES--TGVFTDKDKAAAHLKGGAKKVVISAPS 130 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~--tg~~~~~~~a~~~~~~Gak~vvis~~s 130 (250)
.+.+++. .+.++|.|.-. +......+.+..++++| |.|++--|-
T Consensus 54 ~~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aG-kHVL~EKPl 99 (343)
T TIGR01761 54 CEVEELP-DDIDIACVVVRSAIVGGQGSALARALLARG-IHVLQEHPL 99 (343)
T ss_pred CCHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCC-CeEEEcCCC
Confidence 1222222 11234544432 23456678888999999 467775554
No 117
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=92.72 E-value=0.083 Score=42.29 Aligned_cols=33 Identities=39% Similarity=0.616 Sum_probs=27.8
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.+||+|+|.|++|+.+.++|.+.. ++|++|...
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag-~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAG-HEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTT-SEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeC
Confidence 479999999999999999999876 898888644
No 118
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=92.70 E-value=0.55 Score=40.84 Aligned_cols=92 Identities=22% Similarity=0.141 Sum_probs=54.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
|+++|.|+|.||.-+.+.+.... .|++..+.- .++..+.+.+|- +. . ++..+ .
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag-~eV~igs~r--~~~~~~a~a~~l--------------~~--~------i~~~~--~ 54 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG-HEVIIGSSR--GPKALAAAAAAL--------------GP--L------ITGGS--N 54 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC-CeEEEecCC--ChhHHHHHHHhh--------------cc--c------cccCC--h
Confidence 68999999999999999988775 787666432 344333333221 01 1 11111 1
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHH-CCCCEEEEeCCC
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK-GGAKKVVISAPS 130 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~-~Gak~vvis~~s 130 (250)
++.. .+.|+||-+.+-..-.+-.+.+.. -| .|+|||...
T Consensus 55 ~dA~----~~aDVVvLAVP~~a~~~v~~~l~~~~~-~KIvID~tn 94 (211)
T COG2085 55 EDAA----ALADVVVLAVPFEAIPDVLAELRDALG-GKIVIDATN 94 (211)
T ss_pred HHHH----hcCCEEEEeccHHHHHhHHHHHHHHhC-CeEEEecCC
Confidence 2222 257999998876555554444443 23 468997654
No 119
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.47 E-value=0.26 Score=39.77 Aligned_cols=78 Identities=27% Similarity=0.307 Sum_probs=45.0
Q ss_pred eeEEEEcC-ChHHHHHHHHHHcCCCc-eEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec
Q 025639 7 IKIGINGF-GRIGRLVARVALQRDDV-ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (250)
Q Consensus 7 ~kVaI~G~-G~IGr~~lr~l~~~~~~-~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~ 84 (250)
|||+|+|. |.||..++-.|..++-. ||+-+ |. +.+ .+.-...|-.|..+. .+..+.+..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~-D~--~~~-~~~g~a~Dl~~~~~~--------------~~~~~~i~~- 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLI-DI--NED-KAEGEALDLSHASAP--------------LPSPVRITS- 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEE-ES--SHH-HHHHHHHHHHHHHHG--------------STEEEEEEE-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEe-cc--Ccc-cceeeehhhhhhhhh--------------ccccccccc-
Confidence 58999996 99999999988877632 34334 33 111 222222343332211 112233333
Q ss_pred CCCCCCCcccCCccEEEeecCCC
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVF 107 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~ 107 (250)
.+.+.+. ++|+|+-++|.-
T Consensus 62 ~~~~~~~----~aDivvitag~~ 80 (141)
T PF00056_consen 62 GDYEALK----DADIVVITAGVP 80 (141)
T ss_dssp SSGGGGT----TESEEEETTSTS
T ss_pred ccccccc----cccEEEEecccc
Confidence 3455554 899999999874
No 120
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=92.43 E-value=0.36 Score=42.91 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=57.3
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCC----------CceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeee-EE
Q 025639 6 KIKIGINGFGRIGRLVARVALQRD----------DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTL-LF 74 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~----------~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l-~~ 74 (250)
..||.|+|.|-+|-.+++.|.... .++++.+..-..++..+-.-+-+++..|+.. ..+-. . .+ .+
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~K-a~v~~-~--ri~~~ 86 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNK-AIVLV-N--RLNQA 86 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHH-HHHHH-H--HHHhc
Confidence 379999999999999999987531 1355555422233333333333445556654 22211 1 11 12
Q ss_pred CCEEEEEEecC-CCCCCCcccCCccEEEeecCCCCCHHHHHHHH
Q 025639 75 GEKPVAVFGFR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL 117 (250)
Q Consensus 75 ~g~~i~v~~~~-~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~ 117 (250)
++-.++...++ +++++ + .+.|+|++|+....++...-..+
T Consensus 87 ~~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~~~~ 127 (244)
T TIGR03736 87 MGTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAILRAF 127 (244)
T ss_pred cCceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHHHHH
Confidence 23333333221 22222 2 26899999999888876554333
No 121
>PRK06932 glycerate dehydrogenase; Provisional
Probab=92.30 E-value=0.18 Score=46.19 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=25.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+|||+|+|+|||.+++.+..-. ++|++.+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg-~~V~~~~ 177 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALG-MKVLYAE 177 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCC-CEEEEEC
Confidence 58999999999999999987655 8877664
No 122
>PRK08507 prephenate dehydrogenase; Validated
Probab=92.23 E-value=0.65 Score=41.36 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=24.6
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC-CceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRD-DVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~-~~~vvain 37 (250)
|||+|+|+|.+|..+.+.|.+.. ..++.+++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d 32 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYD 32 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEc
Confidence 38999999999999999998765 24666554
No 123
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.21 E-value=0.19 Score=45.04 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=27.0
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|++||+|+|+|.+|+.+++.+.... +++.+.+
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g-~~v~~~d 32 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAG-YSLVVYD 32 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCC-CeEEEEc
Confidence 5679999999999999999988765 7876654
No 124
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=92.21 E-value=0.19 Score=46.41 Aligned_cols=31 Identities=32% Similarity=0.553 Sum_probs=26.6
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.+|||+|+|+||+.+.+.+..-. |++++.+-
T Consensus 143 kTvGIiG~G~IG~~va~~l~afg-m~v~~~d~ 173 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFG-MKVIGYDP 173 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEECC
Confidence 47999999999999999888776 89877753
No 125
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.91 E-value=0.48 Score=43.92 Aligned_cols=101 Identities=21% Similarity=0.237 Sum_probs=54.0
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEEC-CEEEEEEecCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFG-EKPVAVFGFRN 86 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~-g~~i~v~~~~~ 86 (250)
+|+|.|.|.||...+.++...+--+|+++ |. +++-++...++.. . ...++ ++.. .. ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-d~--~~~Rl~~A~~~~g--------------~-~~~~~~~~~~-~~--~~ 229 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-DR--SPERLELAKEAGG--------------A-DVVVNPSEDD-AG--AE 229 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-CC--CHHHHHHHHHhCC--------------C-eEeecCcccc-HH--HH
Confidence 69999999999988777766665666666 44 3444443332211 1 11111 1110 00 00
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCC
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s 130 (250)
..++..+ .++|+||||+|...+.+.+-..++.|-.-+++.-+.
T Consensus 230 ~~~~t~g-~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 230 ILELTGG-RGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred HHHHhCC-CCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccC
Confidence 0011111 379999999996655566656666554334444443
No 126
>PLN02928 oxidoreductase family protein
Probab=91.83 E-value=0.22 Score=46.34 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=27.1
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.+|||+|+|.||+.+++.|...+ ++|++.+.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG-~~V~~~dr 190 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFG-VKLLATRR 190 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCC-CEEEEECC
Confidence 48999999999999999998776 89888764
No 127
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.82 E-value=0.68 Score=41.90 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=25.7
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCC-CceEEEee
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRD-DVELVAVN 37 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~-~~~vvain 37 (250)
|.++|+|.|+|.||+.+.|.+.++. ...+.+..
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d 35 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRD 35 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeec
Confidence 4579999999999999999999876 23344443
No 128
>PRK07574 formate dehydrogenase; Provisional
Probab=91.77 E-value=0.22 Score=47.09 Aligned_cols=31 Identities=39% Similarity=0.497 Sum_probs=26.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.+|||+|+|+||+.+++.|.... ++|.+.+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG-~~V~~~dr 223 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFD-VKLHYTDR 223 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEECC
Confidence 57999999999999999988765 88877754
No 129
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.75 E-value=0.2 Score=49.01 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=29.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHh
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMT 47 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a 47 (250)
.||||+|.|.+|+.++..+.... ++++..+- +++.+.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG-~~V~l~d~---~~e~l~ 42 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAG-HQVLLYDI---RAEALA 42 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCC-CeEEEEeC---CHHHHH
Confidence 48999999999999999998876 88776653 355443
No 130
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=91.65 E-value=0.34 Score=45.41 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=34.3
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCC-ceEEEeeCCCCChhHHhhh
Q 025639 7 IKIGING-FGRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYM 49 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~-~~vvaind~~~~~~~~a~l 49 (250)
.|+.|.| ||.||.+.|+.+.++|+ |+++++..- .+.+.+...
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag-~n~~~l~~q 45 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAG-KNVELLAEQ 45 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecC-CcHHHHHHH
Confidence 4899999 99999999999998874 999999865 466644433
No 131
>PRK06436 glycerate dehydrogenase; Provisional
Probab=91.62 E-value=0.25 Score=45.22 Aligned_cols=31 Identities=35% Similarity=0.505 Sum_probs=26.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.+|||+|+|+||+.+++.+.... +++++.+.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG-~~V~~~~r 153 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFG-MNIYAYTR 153 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEECC
Confidence 58999999999999999876554 88888764
No 132
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=91.51 E-value=0.31 Score=44.84 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
+||+|+|.|.||+.++.+|..+.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~ 23 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQG 23 (313)
T ss_pred CeEEEECCChHHHHHHHHHhccc
Confidence 48999999999999999887664
No 133
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=91.43 E-value=0.27 Score=44.71 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=32.0
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
|+++|-+.|||.+|+..+|.+..+|.+|+|+.-+.
T Consensus 1 m~~~vvqyGtG~vGv~air~l~akpe~elvgawv~ 35 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVH 35 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcCCCCceEEEEec
Confidence 77899999999999999999999988999998765
No 134
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.41 E-value=0.58 Score=40.30 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=24.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|||+|+| +|.+|..+.+.|.+.. .+|+..+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~~ 31 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIGS 31 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 4899997 9999999999998875 5665554
No 135
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=91.36 E-value=0.35 Score=45.63 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=60.8
Q ss_pred EEc-CChHHHHHHHHHHcCC-CceEEEeeCCCCChhHHhhhhc-cccccccCCCcceEEeCCe---eeE--ECCEEEEEE
Q 025639 11 ING-FGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFK-YDSVHGQWKHNELKVKDEK---TLL--FGEKPVAVF 82 (250)
Q Consensus 11 I~G-~G~IGr~~lr~l~~~~-~~~vvaind~~~~~~~~a~ll~-ydS~~G~~~~~~v~~~~~~---~l~--~~g~~i~v~ 82 (250)
|.| ||.||++.++.+..++ +|+|+++..- .+.+.+....+ |...| +-..+.. .+. ..++.++++
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~-~n~~~L~~q~~~f~p~~-------v~i~~~~~~~~l~~~l~~~~~~v~ 72 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTAN-YNIELLEQQIKRFQPRI-------VSVADKELADTLRTRLSANTSKIT 72 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECC-CCHHHHHHHHHHhCCCE-------EEEcCHHHHHHHHHhccCCCcEEE
Confidence 579 9999999999988775 4999999864 56665544432 22111 1111110 010 122223333
Q ss_pred ecCC-CCC-CCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeC
Q 025639 83 GFRN-PEE-IPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (250)
Q Consensus 83 ~~~~-p~~-i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~ 128 (250)
...+ ..+ ..+ ..+|+|+.+.-.+...+-.-..+++| |++-+.|
T Consensus 73 ~G~~~l~~l~~~--~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLAN 117 (383)
T PRK12464 73 YGTDGLIAVATH--PGSDLVLSSVVGAAGLLPTIEALKAK-KDIALAN 117 (383)
T ss_pred ECHHHHHHHHcC--CCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEec
Confidence 3211 111 112 26899999986666776666778899 5665644
No 136
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=91.33 E-value=0.27 Score=45.41 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=26.1
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.++||+|+|+||+.++|.+.--+ ++|.+-+..
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fg-m~v~y~~~~ 178 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFG-MKVLYYDRS 178 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCC-CEEEEECCC
Confidence 58999999999999999988444 887666543
No 137
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.26 E-value=2.9 Score=38.20 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=25.0
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+|.|.|.|.||...++++.... ..++++..
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~ 204 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRG-FEVYVLNR 204 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEec
Confidence 7999999999999998887776 57777753
No 138
>PRK13243 glyoxylate reductase; Reviewed
Probab=91.23 E-value=0.28 Score=45.36 Aligned_cols=31 Identities=42% Similarity=0.583 Sum_probs=26.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.+|||+|+|+||+.+++.|.... ++|.+.+.
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~ 181 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFG-MRILYYSR 181 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEECC
Confidence 58999999999999999998765 88876653
No 139
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=91.22 E-value=0.29 Score=45.15 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=24.3
Q ss_pred eeEEEEcCChHHHHHHHHHH-cCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVAL-QRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~-~~~~~~vvain 37 (250)
.+|||+|+|+|||.+.+.+. ..+ ++|++.+
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fg-m~V~~~~ 176 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFN-MPILYNA 176 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCC-CEEEEEC
Confidence 58999999999999999886 444 7876543
No 140
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=91.22 E-value=0.54 Score=34.61 Aligned_cols=41 Identities=32% Similarity=0.420 Sum_probs=29.9
Q ss_pred eEEEEcCChHHHHHHHHHHcCC--CceEEEeeCCCCChhHHhhhh
Q 025639 8 KIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMF 50 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~--~~~vvaind~~~~~~~~a~ll 50 (250)
||||+|+|.+|..+++-+.+++ .-++..+++. +++...++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHH
Confidence 7999999999999999988774 3566545443 566555543
No 141
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.09 E-value=0.29 Score=46.59 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=26.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+|||+|+|+||+.+++.+.... +++++.+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fG-m~V~~~d 181 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLG-MRVYFYD 181 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEC
Confidence 47999999999999999998765 8988775
No 142
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=91.05 E-value=0.32 Score=44.66 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=26.6
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.+|||+|+|.||+.+++.|...+ +++.+.+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG-~~V~~~~~ 167 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWG-FPLRCWSR 167 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 58999999999999999998765 88877753
No 143
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=91.02 E-value=0.32 Score=44.98 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=26.1
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
++|||+|+|+||+.+++.|.... ++|++.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G-~~V~~~d 176 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFG-ATITAYD 176 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEe
Confidence 58999999999999999998765 8887775
No 144
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.38 E-value=0.68 Score=42.62 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=24.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.||+|+|.|.+|..++..+..++-.+ +.+-|.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi 38 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDI 38 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeC
Confidence 58999999999999998877665236 444454
No 145
>PRK08818 prephenate dehydrogenase; Provisional
Probab=90.36 E-value=0.81 Score=43.09 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=24.9
Q ss_pred ceeEEEEcC-ChHHHHHHHHHHcCCCceEEEe
Q 025639 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (250)
Q Consensus 6 ~~kVaI~G~-G~IGr~~lr~l~~~~~~~vvai 36 (250)
+.||+|+|. |.||+.+.++|.+....+|.++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 368999997 9999999999986534676555
No 146
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.31 E-value=3.7 Score=36.90 Aligned_cols=31 Identities=32% Similarity=0.327 Sum_probs=23.4
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
+|.|+|.|.||...++++.... ...+.+.+.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~ 177 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAG-GSPPAVWET 177 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEeCC
Confidence 6899999999999998887766 554444343
No 147
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.30 E-value=0.85 Score=41.45 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=26.6
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.||.|.|+|++|+.+++.|...+ .++..++..
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~ 184 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALG-ANVTVGARK 184 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEEEEECC
Confidence 58999999999999999998776 677666543
No 148
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.21 E-value=0.48 Score=37.82 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=28.8
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhcc
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKY 52 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~y 52 (250)
||.|.|.|.+|..+++.|...+-=++.-+.+-..+++.+.+-+-|
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~ 45 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLA 45 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccC
Confidence 689999999999999999877621343343322344444443334
No 149
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=90.16 E-value=0.4 Score=45.30 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=26.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+|||+|+|.||+.+++.+..-+ +++.+.+
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G-~~V~~~d 146 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALG-IKTLLCD 146 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEEC
Confidence 58999999999999999998776 8887765
No 150
>PLN02306 hydroxypyruvate reductase
Probab=90.08 E-value=0.42 Score=45.24 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=24.9
Q ss_pred eeEEEEcCChHHHHHHHHHH-cCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVAL-QRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~-~~~~~~vvain 37 (250)
.+|||+|+|+||+.+++.+. .-. ++|.+.+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fG-m~V~~~d 196 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYD 196 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-CEEEEEC
Confidence 58999999999999999875 444 8887765
No 151
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=90.02 E-value=1.6 Score=41.82 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=28.1
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
|||-|-| +|.||+.+++.|.++. .+|+++...
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ldr~ 153 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIGRG-DEVIVIDNF 153 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 6899999 9999999999999886 788888643
No 152
>PLN02602 lactate dehydrogenase
Probab=89.78 E-value=0.58 Score=43.72 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=74.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCc-eEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~-~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
.||+|+|.|.||..++-.|..++-. |++-+ |. +.+ .+.-..-|-.|.. .+.+. ..+....
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~Li-Di--~~~-~~~g~a~DL~~~~--------------~~~~~-~~i~~~~ 98 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALV-DV--NPD-KLRGEMLDLQHAA--------------AFLPR-TKILAST 98 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEE-eC--CCc-hhhHHHHHHHhhh--------------hcCCC-CEEEeCC
Confidence 5999999999999999988876532 33333 32 111 1111112332211 11111 2333222
Q ss_pred CCCCCCcccCCccEEEeecCCCC----CHH------------HHHHHHHCC--CCEEEEeCCCCCCCeEEeecCccccCC
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFT----DKD------------KAAAHLKGG--AKKVVISAPSKDAPMFVVGVNEKEYKP 147 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~----~~~------------~a~~~~~~G--ak~vvis~~s~d~p~iV~gVN~~~~~~ 147 (250)
+.+++. ++|+|+-++|.-. ++. .++...+.+ +..+++|||.. .-+.+. -....+.
T Consensus 99 dy~~~~----daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvd-v~t~~~-~k~sg~p- 171 (350)
T PLN02602 99 DYAVTA----GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVD-VLTYVA-WKLSGFP- 171 (350)
T ss_pred CHHHhC----CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchH-HHHHHH-HHHhCCC-
Confidence 344333 8999999998742 332 222222222 22344476642 110000 0001121
Q ss_pred CCCEEecCChhhhhHHHHHHHHHhhcCeeEEEEEee
Q 025639 148 ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183 (250)
Q Consensus 148 ~~~IIs~~sCtT~~la~~l~~L~~~fgI~~~~vtTi 183 (250)
..++|. .||.---++.-..|.+.+|+..-.+..+
T Consensus 172 ~~rviG--~gt~LDs~R~r~~lA~~l~v~~~~V~~~ 205 (350)
T PLN02602 172 ANRVIG--SGTNLDSSRFRFLIADHLDVNAQDVQAY 205 (350)
T ss_pred HHHEEe--ecchHHHHHHHHHHHHHhCCCccceeee
Confidence 345663 4555555677788889999876555444
No 153
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=89.72 E-value=0.55 Score=35.20 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=56.3
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 85 (250)
..|++|.|.|..|+.++...+....+.++++-|. +++ +. + -.++| ++++.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv--~~~-------------~~---------G--~~i~g--ipV~~-- 52 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV--DPE-------------KI---------G--KEIGG--IPVYG-- 52 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE--CTT-------------TT---------T--SEETT--EEEES--
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc--CCC-------------cc---------C--cEECC--EEeec--
Confidence 3699999999999988755554445888888765 221 00 1 12333 34441
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEE
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvi 126 (250)
+.+++.=. .++|+.+-|.+.....+.+...+++|.|.++.
T Consensus 53 ~~~~l~~~-~~i~iaii~VP~~~a~~~~~~~~~~gIk~i~n 92 (96)
T PF02629_consen 53 SMDELEEF-IEIDIAIITVPAEAAQEVADELVEAGIKGIVN 92 (96)
T ss_dssp SHHHHHHH-CTTSEEEEES-HHHHHHHHHHHHHTT-SEEEE
T ss_pred cHHHhhhh-hCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEE
Confidence 11222111 13899999998877778888899999987664
No 154
>PLN02214 cinnamoyl-CoA reductase
Probab=89.66 E-value=2.1 Score=39.13 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=26.7
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.+|.|-| +|.||+.+++.|.++. .+|+++..
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r 42 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERG-YTVKGTVR 42 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeC
Confidence 5899999 9999999999999886 78777754
No 155
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.63 E-value=2.1 Score=38.91 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=25.3
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+|||+|+|.|.||..+...|.+.. .++..+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r 36 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLR 36 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEe
Confidence 479999999999999999888764 55554543
No 156
>PLN03139 formate dehydrogenase; Provisional
Probab=89.60 E-value=0.43 Score=45.20 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=25.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+|||+|+|+||+.+++.|.... +++.+.+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG-~~V~~~d 229 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFN-CNLLYHD 229 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCC-CEEEEEC
Confidence 58999999999999999998654 8876654
No 157
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.56 E-value=0.46 Score=42.49 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=25.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|||+|+|+|.+|..+.+.|.+++ ++|.+++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g-~~V~~~d 30 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG-HTVYGVS 30 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC-CEEEEEE
Confidence 37999999999999999998775 7877775
No 158
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.50 E-value=2 Score=39.04 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=48.8
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCc-eEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDV-ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~-~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
+|.|+|.|.+|...++++.... . .++++.. +++.+..+.++ |. + ..++-+.-.+. +
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~---~~~~~~~a~~l----Ga----~--------~vi~~~~~~~~---~ 228 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLG-AAEIVCADV---SPRSLSLAREM----GA----D--------KLVNPQNDDLD---H 228 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEeC---CHHHHHHHHHc----CC----c--------EEecCCcccHH---H
Confidence 6999999999999999888775 5 4555542 24433333322 20 0 11111000000 0
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCC
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Ga 121 (250)
... .. .++|+||||+|...+.+.+-..++.|-
T Consensus 229 ~~~-~~--g~~D~vid~~G~~~~~~~~~~~l~~~G 260 (343)
T PRK09880 229 YKA-EK--GYFDVSFEVSGHPSSINTCLEVTRAKG 260 (343)
T ss_pred Hhc-cC--CCCCEEEECCCCHHHHHHHHHHhhcCC
Confidence 000 01 258999999997545555666777665
No 159
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.50 E-value=0.33 Score=42.80 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.9
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCC
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
|++||+|+|+|.+|..+++.+.+..
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g 25 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASG 25 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCC
Confidence 5689999999999999999888653
No 160
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=89.36 E-value=0.84 Score=41.72 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=25.0
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCC-ceEEEee
Q 025639 7 IKIGING-FGRIGRLVARVALQRDD-VELVAVN 37 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~-~~vvain 37 (250)
|||+|.| +|.+|..++..|...+- .+|+.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEE
Confidence 4899999 69999999999988762 3566664
No 161
>PLN02256 arogenate dehydrogenase
Probab=89.32 E-value=0.64 Score=42.51 Aligned_cols=33 Identities=33% Similarity=0.683 Sum_probs=28.0
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.+||+|+|+|.+|+.+++.+.+.+ .++++++..
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d~~ 68 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQG-HTVLATSRS 68 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEECc
Confidence 479999999999999999998765 788877654
No 162
>PLN02206 UDP-glucuronate decarboxylase
Probab=89.22 E-value=1.8 Score=41.49 Aligned_cols=31 Identities=16% Similarity=0.432 Sum_probs=27.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+||-|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~ 151 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDN 151 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHCc-CEEEEEeC
Confidence 6899999 9999999999999886 78888754
No 163
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.92 E-value=2.1 Score=37.83 Aligned_cols=136 Identities=18% Similarity=0.239 Sum_probs=69.6
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
+|.|.|.|.||...++++.... .. ++++ +. +++-+..+.++ | . + ..++.+.. .+ .
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~-~~--~~~r~~~a~~~----G----a------~--~~i~~~~~--~~--~ 178 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAG-AARVVAA-DP--SPDRRELALSF----G----A------T--ALAEPEVL--AE--R 178 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEE-CC--CHHHHHHHHHc----C----C------c--EecCchhh--HH--H
Confidence 6899999999999998887765 65 6666 32 23332222211 1 0 0 11111000 00 0
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCCCCeEEeecCcccc-CCCCCEEecCChhhhhHHHH
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEY-KPELDIVSNASCTTNCLAPL 165 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d~p~iV~gVN~~~~-~~~~~IIs~~sCtT~~la~~ 165 (250)
..++.. ..++|+||||+|.-...+.+-..++.|.+-+++.......+ ..+|...+ ..+..|+..-..+...+..+
T Consensus 179 ~~~~~~-~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~---~~i~~~~~~~~~~~i~g~~~~~~~~~~~~ 254 (280)
T TIGR03366 179 QGGLQN-GRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGP---VALDPEQVVRRWLTIRGVHNYEPRHLDQA 254 (280)
T ss_pred HHHHhC-CCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCc---eeeCHHHHHhCCcEEEecCCCCHHHHHHH
Confidence 000111 12689999999876555566667766654443433222122 13343333 22445665544444556666
Q ss_pred HHHHHh
Q 025639 166 AKVIHD 171 (250)
Q Consensus 166 l~~L~~ 171 (250)
++.|.+
T Consensus 255 ~~~l~~ 260 (280)
T TIGR03366 255 VRFLAA 260 (280)
T ss_pred HHHHHh
Confidence 666665
No 164
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=88.60 E-value=3.4 Score=37.88 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=24.0
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCc-eEEEe
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDV-ELVAV 36 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~-~vvai 36 (250)
.||+|+|.|.||..++-.|..++-. |++-+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~ 37 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVII 37 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 5999999999999999988877633 44444
No 165
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=88.34 E-value=0.67 Score=43.02 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=27.8
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.+|||+|+|++|+.+++.|.... ++|++.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G-~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSG-VEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCc-CEEEEEECc
Confidence 57999999999999999998876 898777654
No 166
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=88.19 E-value=2.5 Score=37.19 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=27.0
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
+|-|.| +|.||+.+++.|.++. .+|+++...
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g-~~V~~~~r~ 33 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG-HDVRGLDRL 33 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC-CeEEEEeCC
Confidence 489999 9999999999999885 888888754
No 167
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=87.94 E-value=0.71 Score=43.65 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=26.0
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+|||+|+|.||+.+.+.+...+ +++++.+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G-~~V~~~D 146 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLG-WKVLVCD 146 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEC
Confidence 57999999999999999998775 8887764
No 168
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=87.79 E-value=1.3 Score=42.13 Aligned_cols=31 Identities=29% Similarity=0.480 Sum_probs=25.0
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCc-eEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~-~vvaind 38 (250)
.+|+|+|+|.+|+.+++.|...+ + +++.++.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CCeEEEEeC
Confidence 58999999999999999998765 5 5555554
No 169
>PRK08605 D-lactate dehydrogenase; Validated
Probab=87.76 E-value=0.77 Score=42.37 Aligned_cols=31 Identities=32% Similarity=0.529 Sum_probs=24.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
++|||+|+|+||+.+++.|...-.++|.+.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d 177 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYD 177 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEEC
Confidence 5899999999999999998432237776654
No 170
>PTZ00325 malate dehydrogenase; Provisional
Probab=87.72 E-value=4.6 Score=37.25 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.4
Q ss_pred CceeEEEEcC-ChHHHHHHHHHHcCC
Q 025639 5 KKIKIGINGF-GRIGRLVARVALQRD 29 (250)
Q Consensus 5 m~~kVaI~G~-G~IGr~~lr~l~~~~ 29 (250)
| .||+|.|. |.||..++..|..++
T Consensus 8 ~-~KI~IiGaaG~VGs~~a~~l~~~~ 32 (321)
T PTZ00325 8 M-FKVAVLGAAGGIGQPLSLLLKQNP 32 (321)
T ss_pred C-CEEEEECCCCHHHHHHHHHHhcCC
Confidence 5 49999996 999999998888554
No 171
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.60 E-value=1.2 Score=40.81 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.7
Q ss_pred eEEEEcCChHHHHHHHHHHcCC
Q 025639 8 KIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
||+|+|.|.||..++.+|..++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~ 22 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcC
Confidence 7999999999999988887765
No 172
>PLN02712 arogenate dehydrogenase
Probab=87.48 E-value=0.79 Score=46.42 Aligned_cols=34 Identities=29% Similarity=0.609 Sum_probs=28.5
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
+.+||||+|+|.+|+.+++.|.+.+ .+|++++..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G-~~V~~~dr~ 401 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQG-HTVLAYSRS 401 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCc-CEEEEEECC
Confidence 3479999999999999999998765 788877654
No 173
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=87.26 E-value=0.82 Score=38.68 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=26.6
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHh
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMT 47 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a 47 (250)
|||+|.|.|.+|-.++-+++++. ++++++. . +++.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~D-~--~~~~v~ 37 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGVD-I--DEEKVE 37 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT-SEEEEE--S---HHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCC-CEEEEEe-C--ChHHHH
Confidence 58999999999999999999887 9998884 2 455443
No 174
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=87.18 E-value=0.8 Score=45.01 Aligned_cols=31 Identities=32% Similarity=0.576 Sum_probs=26.7
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.+|||+|+|+||+.+++.|.... +++.+.+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~ 169 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFG-MKVLAYDP 169 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEECC
Confidence 48999999999999999988765 88888753
No 175
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=87.01 E-value=1.4 Score=35.16 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=26.7
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
-|+.|+|.|-.||.++..|.+..-=+|.-+|..
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 589999999999999999998862236667764
No 176
>PLN00106 malate dehydrogenase
Probab=86.96 E-value=4.1 Score=37.61 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.4
Q ss_pred eeEEEEcC-ChHHHHHHHHHHcCC
Q 025639 7 IKIGINGF-GRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~-G~IGr~~lr~l~~~~ 29 (250)
.||+|.|. |.||..++..|..++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~ 42 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNP 42 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 59999995 999999999988665
No 177
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.94 E-value=1.1 Score=41.04 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=23.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCC-ceEEEe
Q 025639 7 IKIGINGFGRIGRLVARVALQRDD-VELVAV 36 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~-~~vvai 36 (250)
.||+|+|.|.||..++-.|..++- -|++-+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~Li 34 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLV 34 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 599999999999999988877653 344444
No 178
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=86.81 E-value=0.85 Score=44.83 Aligned_cols=31 Identities=35% Similarity=0.539 Sum_probs=26.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.+|||+|+|+||+.+++.+.... +++++.+.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~ 171 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFG-MKVIAYDP 171 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEECC
Confidence 57999999999999999988765 89888764
No 179
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=86.62 E-value=1.1 Score=40.45 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=27.2
Q ss_pred CCCCCceeEEEEcCChHHHHHHHHHHcCCC-ceEEEee
Q 025639 1 MAGDKKIKIGINGFGRIGRLVARVALQRDD-VELVAVN 37 (250)
Q Consensus 1 ~~~~m~~kVaI~G~G~IGr~~lr~l~~~~~-~~vvain 37 (250)
|.-.|..||+|+|+|.+|+.+++.+..... .++.+++
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~d 38 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGAD 38 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEE
Confidence 333454699999999999999999887652 3555553
No 180
>PLN02712 arogenate dehydrogenase
Probab=86.32 E-value=0.97 Score=45.80 Aligned_cols=32 Identities=28% Similarity=0.571 Sum_probs=27.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
+||||+|+|.+|+.+++.|.+.+ ++|++++..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G-~~V~~~dr~ 84 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQG-HTVLAHSRS 84 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 68999999999999999998876 788777643
No 181
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=86.32 E-value=3.2 Score=36.96 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=25.8
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+|.|.| +|.||+.+++.|.+++ .+|+++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-CEEEEEE
Confidence 4799999 9999999999999886 6777665
No 182
>PRK05086 malate dehydrogenase; Provisional
Probab=86.31 E-value=5.2 Score=36.63 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=21.6
Q ss_pred eeEEEEc-CChHHHHHHHHHHc-CCC-ceEEEe
Q 025639 7 IKIGING-FGRIGRLVARVALQ-RDD-VELVAV 36 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~-~~~-~~vvai 36 (250)
|||+|.| +|.||+.++..+.. .+. -+++.+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~ 33 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLY 33 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEE
Confidence 4899999 69999999987754 332 244444
No 183
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=85.88 E-value=1.1 Score=40.54 Aligned_cols=31 Identities=32% Similarity=0.606 Sum_probs=26.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|||||+|+|.+|+.+++.|.+.. ++++..+.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g-~~v~v~dr 31 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG-HEVVGYDR 31 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC-CeEEEEEC
Confidence 38999999999999999998875 78776654
No 184
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=85.87 E-value=1.2 Score=40.08 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=25.7
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|||+|+|.|.+|..+...|.+.. .++..++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g-~~V~~~~r 32 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG-HDVTLWAR 32 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEEC
Confidence 59999999999999999998775 67655543
No 185
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=85.50 E-value=1.9 Score=39.10 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=24.4
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCc-eEEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDV-ELVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~-~vvain 37 (250)
||+|.|.|.+|+.++..|..++-. +|+-++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 899999999999999998877633 555554
No 186
>PLN02688 pyrroline-5-carboxylate reductase
Probab=85.27 E-value=1.9 Score=37.93 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=25.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCC---ceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDD---VELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~---~~vvaind~ 39 (250)
|||+++|+|.+|..+++.|.+.+. .+++..++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 479999999999999999987651 266666343
No 187
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=85.17 E-value=10 Score=32.41 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=25.1
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.||-|+|.|.+|...++.|.+.+ -+|+.|+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs 40 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG-AHIVVIS 40 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEc
Confidence 48999999999999999988876 5666665
No 188
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.16 E-value=2 Score=37.12 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=24.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC--Cce-EEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD--DVE-LVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~--~~~-vvaind 38 (250)
+||+|+|.|.+|+.+++.+..++ +++ ++..++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~ 39 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR 39 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence 68999999999999999887653 344 555554
No 189
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=85.01 E-value=3.1 Score=37.48 Aligned_cols=96 Identities=16% Similarity=0.253 Sum_probs=51.5
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
+|.|+|.|.+|...++++.... .. ++++... .+....+.++ |- + ..++-+.-.. + .
T Consensus 166 ~vlV~G~G~vG~~~~~~ak~~G-~~~vi~~~~~---~~~~~~~~~~----ga----------~--~~i~~~~~~~-~--~ 222 (339)
T cd08239 166 TVLVVGAGPVGLGALMLARALG-AEDVIGVDPS---PERLELAKAL----GA----------D--FVINSGQDDV-Q--E 222 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEECCC---HHHHHHHHHh----CC----------C--EEEcCCcchH-H--H
Confidence 7899999999999999887765 56 7666432 3333333211 20 0 1111100000 0 0
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEe
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis 127 (250)
..++. ...++|+||||+|.....+.+-..++.+.+-+++.
T Consensus 223 ~~~~~-~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 223 IRELT-SGAGADVAIECSGNTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred HHHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 00010 01268999999997655455556777665433343
No 190
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.97 E-value=1.4 Score=40.19 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=26.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|||+|+|.|.+|..+...|.... .+|..++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKG-VPVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC-CeEEEEeC
Confidence 59999999999999999998775 77776664
No 191
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.86 E-value=1.8 Score=38.80 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=26.0
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCC---ceEEEee
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDD---VELVAVN 37 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~---~~vvain 37 (250)
|.+||+++|+|.+|..+++.|.+++. .+|.+.+
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~ 36 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSD 36 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEEC
Confidence 66799999999999999999987641 3455544
No 192
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=84.84 E-value=8.5 Score=34.17 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=50.9
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~p 87 (250)
+|.|+|.|.+|+.+++++.... .+++++.. +++...++.++... ..++-+ +.
T Consensus 158 ~vlV~g~g~vg~~~~q~a~~~G-~~vi~~~~---~~~~~~~~~~~g~~----------------~~~~~~--------~~ 209 (319)
T cd08242 158 KVAVLGDGKLGLLIAQVLALTG-PDVVLVGR---HSEKLALARRLGVE----------------TVLPDE--------AE 209 (319)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEcC---CHHHHHHHHHcCCc----------------EEeCcc--------cc
Confidence 6899999999999999888876 77766643 34544444322210 111100 00
Q ss_pred CCCCcccCCccEEEeecCCCCCHHHHHHHHHCCC
Q 025639 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (250)
Q Consensus 88 ~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Ga 121 (250)
.++ .++|+++||+|.-...+.+..+++.+.
T Consensus 210 --~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g 239 (319)
T cd08242 210 --SEG--GGFDVVVEATGSPSGLELALRLVRPRG 239 (319)
T ss_pred --ccC--CCCCEEEECCCChHHHHHHHHHhhcCC
Confidence 122 269999999986444556666777665
No 193
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=84.64 E-value=1.4 Score=39.90 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=25.8
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|||++|+|.+|+.+++.|.+.. ++|+..+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g-~~v~v~dr 31 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDG-HEVVGYDV 31 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCC-CEEEEEEC
Confidence 7999999999999999998875 78776653
No 194
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=84.28 E-value=2.2 Score=35.77 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=23.7
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
||||+|.|.+|+.++..+.... ++++-+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d 29 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG-YEVTLYD 29 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT-SEEEEE-
T ss_pred CEEEEcCCHHHHHHHHHHHhCC-CcEEEEE
Confidence 7999999999999999988886 8876664
No 195
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=84.00 E-value=1.5 Score=39.69 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=26.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|||||+|+|++|..+.+.|.++. ++|+..+.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g-~~V~~~dr 31 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG-HDCVGYDH 31 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC-CEEEEEEC
Confidence 37999999999999999998875 88777653
No 196
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.61 E-value=1.7 Score=39.44 Aligned_cols=31 Identities=29% Similarity=0.228 Sum_probs=26.7
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+||+|+|.|.+|..+...+..+. ++|+.++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G-~~V~v~d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG-HEVRLWDA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC-CeeEEEeC
Confidence 48999999999999999999886 78777754
No 197
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=83.30 E-value=4.6 Score=39.08 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=54.8
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
+||+|.|+|.-|+.++|.|.++. .++.+..+. ..++... . ......+ + .+...+.
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~-~~~~~~~------------~--~~~~~~~--i-------~~~~g~~ 62 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDR-PAPEGLA------------A--QPLLLEG--I-------EVELGSH 62 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCC-CeEEEEcCC-CCccchh------------h--hhhhccC--c-------eeecCcc
Confidence 68999999999999999999887 665444332 1110000 0 0000111 1 1111122
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCC
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Ga 121 (250)
+. .+|. +.|+|+-+-|...+....+++.+.|+
T Consensus 63 ~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi 94 (448)
T COG0771 63 DD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGI 94 (448)
T ss_pred ch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 22 4454 78999999999999988888888998
No 198
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=83.13 E-value=3.4 Score=38.05 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=51.6
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCc-eEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDV-ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~-~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
+|.|+|.|.||...++++.... . +++++.. +++.+..+.++ | . + ..++.+.-...+ .
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~---~~~r~~~a~~~----G----a------~--~~i~~~~~~~~~--~ 251 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAG-ASQVVAVDL---NEDKLALAREL----G----A------T--ATVNAGDPNAVE--Q 251 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCcEEEEcC---CHHHHHHHHHc----C----C------c--eEeCCCchhHHH--H
Confidence 6999999999999988887765 5 4666532 34433333221 2 0 0 111110000000 0
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEe
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis 127 (250)
..++. ..++|+||||+|.-.+.+.+-..++.|-+-+.+.
T Consensus 252 i~~~~--~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 252 VRELT--GGGVDYAFEMAGSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred HHHHh--CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEc
Confidence 00111 1268999999987555566666777665333343
No 199
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=82.73 E-value=23 Score=31.43 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=51.0
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~p 87 (250)
+|.|.|.|.+|+.+++++.... ++++++.+. .+....+-++ | . . ..++.+. .+
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g-~~v~~~~~~---~~~~~~~~~~----g----~------~--~~~~~~~-------~~ 222 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQG-AEVFAFTRS---GEHQELAREL----G----A------D--WAGDSDD-------LP 222 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CeEEEEcCC---hHHHHHHHHh----C----C------c--EEeccCc-------cC
Confidence 6889999999999988877766 888777554 2222222111 1 0 0 1111000 11
Q ss_pred CCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCE
Q 025639 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123 (250)
Q Consensus 88 ~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~ 123 (250)
+.++|+++++++.....+.+..+++.+.+.
T Consensus 223 ------~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~ 252 (329)
T cd08298 223 ------PEPLDAAIIFAPVGALVPAALRAVKKGGRV 252 (329)
T ss_pred ------CCcccEEEEcCCcHHHHHHHHHHhhcCCEE
Confidence 136899999987766677777888877633
No 200
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=82.66 E-value=1.9 Score=39.11 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=27.1
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
-+|+|.|+|++|+.+++.|.... .++...+..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G-~~V~v~~R~ 183 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG-ARVFVGARS 183 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 48999999999999999998876 687766643
No 201
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=82.65 E-value=18 Score=29.67 Aligned_cols=30 Identities=20% Similarity=0.063 Sum_probs=24.7
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.||-|+|-|.+|.+.++.|.+.+ -+++.|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g-a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG-AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEc
Confidence 58999999999999999998775 5655563
No 202
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.65 E-value=3.2 Score=38.28 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=19.9
Q ss_pred eeEEEEcC-ChHHHHHHHHHHcCC
Q 025639 7 IKIGINGF-GRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~-G~IGr~~lr~l~~~~ 29 (250)
.||+|.|. |.||..++-.|..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~ 26 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGE 26 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcc
Confidence 69999996 999999998887654
No 203
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.52 E-value=0.87 Score=39.37 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.8
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
.||.|+|.|-+|-.++..|....
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~G 51 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSG 51 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcC
Confidence 58999999999999999998765
No 204
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.43 E-value=1.9 Score=39.15 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=26.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|||+|+|+|.+|+.+.+.|.... .+|...+.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G-~~V~~~~r 35 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANG-HRVRVWSR 35 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 58999999999999999998776 67766654
No 205
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=82.41 E-value=1.6 Score=39.11 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=25.9
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
||||+|+|.+|+.+.+.|.++. ++|+..+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G-~~V~~~dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG-YQLHVTTI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC-CeEEEEcC
Confidence 6999999999999999998876 88877653
No 206
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=82.37 E-value=0.84 Score=39.12 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=24.4
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCc-eEEEee
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAVN 37 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~-~vvain 37 (250)
..||+|+|.|.+|..++..|.... + +++-+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~G-vg~i~lvD 52 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAG-IGKLILVD 52 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 368999999999999999998776 5 344443
No 207
>PLN00203 glutamyl-tRNA reductase
Probab=82.25 E-value=6.9 Score=38.57 Aligned_cols=33 Identities=21% Similarity=0.487 Sum_probs=26.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.+|+|+|+|.+|+.+++.|..++.-+++.+|..
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs 299 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS 299 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 589999999999999999988762256666643
No 208
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=82.22 E-value=2.2 Score=38.89 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=27.3
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+||.|-| +|.||+.+++.|.++...+|++++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 5899999 9999999999998764478888864
No 209
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.21 E-value=2 Score=43.77 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=24.3
Q ss_pred eeEEEEcCChHHHHHHHHHH-cCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVAL-QRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~-~~~~~~vvain 37 (250)
-||+|+|.|.+|+.++..+. ... ++|+-+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G-~~V~l~d 340 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAG-LPVRIKD 340 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcC-CeEEEEe
Confidence 47999999999999999877 544 7866653
No 210
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=82.00 E-value=1.3 Score=45.27 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=28.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhh
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTY 48 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ 48 (250)
-||+|+|.|.+|..++..+.... ++|+-+. . +++.+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~l~d-~--~~~~l~~ 351 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKG-TPIVMKD-I--NQHSLDL 351 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCC-CeEEEEe-C--CHHHHHH
Confidence 37999999999999999988876 8866654 3 4554433
No 211
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=81.95 E-value=6.4 Score=39.27 Aligned_cols=31 Identities=19% Similarity=0.151 Sum_probs=26.0
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
-+|.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G-~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLG-FRVRAGVR 112 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CeEEEEeC
Confidence 3589999 9999999999998886 78777654
No 212
>PLN02778 3,5-epimerase/4-reductase
Probab=81.92 E-value=3.7 Score=36.95 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=26.8
Q ss_pred CCCceeEEEEc-CChHHHHHHHHHHcCCCceEEE
Q 025639 3 GDKKIKIGING-FGRIGRLVARVALQRDDVELVA 35 (250)
Q Consensus 3 ~~m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vva 35 (250)
..|+|||-|.| +|.||+.+++.|.+++ .+++.
T Consensus 6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~~ 38 (298)
T PLN02778 6 GSATLKFLIYGKTGWIGGLLGKLCQEQG-IDFHY 38 (298)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCC-CEEEE
Confidence 34678999999 9999999999999886 56653
No 213
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.65 E-value=7 Score=37.49 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=25.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.||.|+|.|.+|..+++.|.++. .+++.+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d 46 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG-ARVTVVD 46 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 47999999999999999999887 7876665
No 214
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=81.58 E-value=2.1 Score=40.73 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=30.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHh
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMT 47 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a 47 (250)
+||+|+|.|.+|..++..|.++. +++++++- +++.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D~---~~~~v~ 40 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ-KQVIGVDI---NQHAVD 40 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC-CEEEEEeC---CHHHHH
Confidence 68999999999999999999886 88888863 455444
No 215
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=81.52 E-value=19 Score=32.67 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=24.2
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
+|.|.|.|.+|...++++.... ..++++.
T Consensus 169 ~VlV~G~G~vG~~a~~~a~~~G-~~vi~~~ 197 (349)
T TIGR03201 169 LVIVIGAGGVGGYMVQTAKAMG-AAVVAID 197 (349)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEc
Confidence 6999999999999999888776 6776664
No 216
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=81.52 E-value=1.9 Score=40.76 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=26.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|||+|+|+|.+|..++..|.+.. ++|++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G-~~V~~~d 30 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG-HEVTGVD 30 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC-CeEEEEE
Confidence 38999999999999999998876 7887775
No 217
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.36 E-value=3.1 Score=36.56 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
|||||+|+|.+|+.+++.|.+..
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g 23 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSP 23 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCC
Confidence 37999999999999999988764
No 218
>PRK05865 hypothetical protein; Provisional
Probab=81.30 E-value=6 Score=41.31 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=26.7
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|||.|.| +|.||+.+++.|.+++ .+++++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R 32 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG-HEVVGIAR 32 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEC
Confidence 3799999 9999999999998876 78877754
No 219
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=81.13 E-value=2.2 Score=38.19 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=27.3
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|||-|.| .|.+|+.+.+.+.++. +++++++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~-~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG-YEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS-EEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC-CEEEEeCc
Confidence 6899999 9999999999998865 89888853
No 220
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=80.88 E-value=7.2 Score=35.56 Aligned_cols=63 Identities=17% Similarity=0.123 Sum_probs=40.9
Q ss_pred CccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCC-CCCCCeEEeecCccccCCCCCEEecCChhhhh
Q 025639 96 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP-SKDAPMFVVGVNEKEYKPELDIVSNASCTTNC 161 (250)
Q Consensus 96 ~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~-s~d~p~iV~gVN~~~~~~~~~IIs~~sCtT~~ 161 (250)
+.|++|..+..-...+-.+.|++-|| +|+++. .+|+..-|-.+|.=.+- ...+|+.++-.|..
T Consensus 230 ~e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~dvd~~vk~~~~V~Ii-~GGlV~~s~~it~g 293 (351)
T COG5322 230 QEDILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPKDVDTSVKNVGGVRII-PGGLVEHSLDITWG 293 (351)
T ss_pred ccceEEEEeecCCCceechhhccCCe--EEEcCCcCcccccccccCCCeEEe-cCccccCccccchh
Confidence 44666666655555666789999999 999987 45666666666643332 34677766655544
No 221
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=80.87 E-value=1.8 Score=44.40 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=30.1
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhh
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMF 50 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll 50 (250)
-||+|+|.|.+|..++..+.... ++|+-+ |. +++.+....
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G-~~V~l~-d~--~~~~l~~~~ 375 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKG-LKTVLK-DA--TPAGLDRGQ 375 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCC-CcEEEe-cC--CHHHHHHHH
Confidence 37999999999999999888876 887655 33 455554433
No 222
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.69 E-value=1.3 Score=36.92 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.9
Q ss_pred eEEEEcCChHHHHHHHHHHcCC
Q 025639 8 KIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
||+|+|.|-+|-.++..|....
T Consensus 1 ~VlViG~GglGs~ia~~La~~G 22 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG 22 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 6899999999999999988765
No 223
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.56 E-value=2.2 Score=43.62 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=25.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
-||+|+|.|.+|+.+...+.... ++|+-+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~l~d 343 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG-VPVIMKD 343 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC-CeEEEEe
Confidence 37999999999999999888776 7766554
No 224
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=80.46 E-value=2.4 Score=38.25 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=26.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.||+|+|+|.+|..+.+.|.++. ++|...+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V~v~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG-HQLQVFDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC-CeEEEEcC
Confidence 38999999999999999998876 77766653
No 225
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=80.46 E-value=2.4 Score=39.62 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=25.1
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.+||+|||+||+++.+.+..-. +.+++-.+.
T Consensus 148 TLgvlG~GrIGseVA~r~k~~g-m~vI~~dpi 178 (406)
T KOG0068|consen 148 TLGVLGLGRIGSEVAVRAKAMG-MHVIGYDPI 178 (406)
T ss_pred EEEEeecccchHHHHHHHHhcC-ceEEeecCC
Confidence 5899999999999999887665 777666543
No 226
>PRK08618 ornithine cyclodeaminase; Validated
Probab=80.37 E-value=4.6 Score=37.06 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=53.0
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
-+++|.|+|.+|+..++++.....++-+.|-+. +++....+.+ ... .. . +-++..+. +
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r--~~~~a~~~~~-----------~~~--~~--~---~~~~~~~~--~ 185 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR--TFEKAYAFAQ-----------EIQ--SK--F---NTEIYVVN--S 185 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECC--CHHHHHHHHH-----------HHH--Hh--c---CCcEEEeC--C
Confidence 579999999999999888764434777777665 4443322220 000 00 0 00111221 2
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeC
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~ 128 (250)
+++.- .++|+|+-||+.... ... ..++.|+ .|++-
T Consensus 186 ~~~~~---~~aDiVi~aT~s~~p-~i~-~~l~~G~--hV~~i 220 (325)
T PRK08618 186 ADEAI---EEADIIVTVTNAKTP-VFS-EKLKKGV--HINAV 220 (325)
T ss_pred HHHHH---hcCCEEEEccCCCCc-chH-HhcCCCc--EEEec
Confidence 22211 268999999987744 334 6778887 55543
No 227
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.37 E-value=8.7 Score=37.25 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=50.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
-||.|.|+|+.|+..++.|..+. .++++ .|. +++....+.+ + +-.+ +.+ ...
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~~-~D~--~~~~~~~l~~----~------------g~~~-~~~-------~~~ 64 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG-ARPTV-CDD--DPDALRPHAE----R------------GVAT-VST-------SDA 64 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEEE-EcC--CHHHHHHHHh----C------------CCEE-EcC-------cch
Confidence 48999999999999999988876 66555 554 2222222110 0 1001 111 111
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCC
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Ga 121 (250)
++.+. +.|+|+.|.|.-.+......+.+.|.
T Consensus 65 ~~~l~----~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 65 VQQIA----DYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred HhHhh----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 22232 57999999998777666666666776
No 228
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=80.26 E-value=1.4 Score=38.33 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=21.0
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
.||.|+|.|-+|-.+++.|....
T Consensus 22 ~~VlivG~GglGs~va~~La~~G 44 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAG 44 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC
Confidence 58999999999999999998765
No 229
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=80.21 E-value=3.4 Score=31.28 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=24.2
Q ss_pred EEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 9 IGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 9 VaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
|-|.|+|++|+.+++.|.++. .+++.|...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECC
Confidence 468999999999999999854 788888653
No 230
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=80.05 E-value=2.5 Score=39.97 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=26.8
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|||.|.|+|++|+.+++.|.++. .+++.+..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g-~~v~vid~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN-NDVTVIDT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CcEEEEEC
Confidence 47999999999999999998775 88888854
No 231
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.98 E-value=3 Score=36.63 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=21.0
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
.||.|.|.|-+|-.+++.|....
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~G 34 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSG 34 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcC
Confidence 58999999999999999998765
No 232
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=79.94 E-value=2.6 Score=41.04 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=26.2
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+||||+|.|.+|..++..+..+. ++|+..+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G-~~V~v~D 34 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAG-IDVAVFD 34 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCC-CeEEEEe
Confidence 358999999999999999998876 7776554
No 233
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=79.89 E-value=2.7 Score=37.23 Aligned_cols=134 Identities=20% Similarity=0.345 Sum_probs=69.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCC--------CChhHHhhhhcccccccc-CCCcceEEeCCeeeEECCE
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF--------ISTDYMTYMFKYDSVHGQ-WKHNELKVKDEKTLLFGEK 77 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~--------~~~~~~a~ll~ydS~~G~-~~~~~v~~~~~~~l~~~g~ 77 (250)
.+|+|-|||.||+.+++.|.+.. ..+++|.|.. .+.+.+..+. +. +|. +. .+. ....+
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~G-a~vv~vsD~~G~i~~~~Gld~~~l~~~~--~~-~~~~v~----~~~----~~~~~- 99 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELG-AKVVAVSDSSGAIYDPDGLDVEELLRIK--EE-RGSRVD----DYP----LESPD- 99 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT-EEEEEEEESSEEEEETTEEHHHHHHHHH--HH-HSSHST----TGT----HTCSS-
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CEEEEEecCceEEEcCCCchHHHHHHHH--HH-hCCccc----ccc----ccccc-
Confidence 68999999999999999999987 8999996641 1222222111 11 111 11 000 00000
Q ss_pred EEEEEecCCCCCCCcccCCccEEEeec-CCCCCHHHHHHHHHCCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEecCC
Q 025639 78 PVAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNAS 156 (250)
Q Consensus 78 ~i~v~~~~~p~~i~w~~~~vdiV~~~t-g~~~~~~~a~~~~~~Gak~vvis~~s~d~p~iV~gVN~~~~~~~~~IIs~~s 156 (250)
..+.... .+++ |. .++||.+=|+ +..++.+.++..++.||| +|+-+. +-|+- ++-.. .+. ++.|+-.|.
T Consensus 100 ~~~~~~~--~~~i-l~-~~~DiliP~A~~~~I~~~~~~~~i~~~ak-iIvegA--N~p~t-~~a~~-~L~-~rGI~viPD 169 (244)
T PF00208_consen 100 GAEYIPN--DDEI-LS-VDCDILIPCALGNVINEDNAPSLIKSGAK-IIVEGA--NGPLT-PEADE-ILR-ERGILVIPD 169 (244)
T ss_dssp TSEEECH--HCHG-GT-SSSSEEEEESSSTSBSCHHHCHCHHTT-S-EEEESS--SSSBS-HHHHH-HHH-HTT-EEE-H
T ss_pred ceeEecc--cccc-cc-ccccEEEEcCCCCeeCHHHHHHHHhccCc-EEEeCc--chhcc-HHHHH-HHH-HCCCEEEcc
Confidence 0011111 0122 43 5899999998 777888888767788885 456433 22321 22221 222 345555555
Q ss_pred hhhhhHH
Q 025639 157 CTTNCLA 163 (250)
Q Consensus 157 CtT~~la 163 (250)
=.+|+-.
T Consensus 170 ~~aNaGG 176 (244)
T PF00208_consen 170 FLANAGG 176 (244)
T ss_dssp HHHTTHH
T ss_pred hhhcCCC
Confidence 5555543
No 234
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=79.75 E-value=2.6 Score=38.12 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=24.8
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|||++|+|.+|..+.+.|.+.. +++...+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~v~~ 30 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG-HQLHVTT 30 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CeEEEEe
Confidence 7999999999999999998876 6766554
No 235
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=79.53 E-value=2.4 Score=43.11 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=27.4
Q ss_pred eeEEEEcCChHHHHHHHHHHc-CCCceEEEeeCCCCChhHHhhh
Q 025639 7 IKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPFISTDYMTYM 49 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~-~~~~~vvaind~~~~~~~~a~l 49 (250)
.||+|+|.|.+|+.++..+.. .. ++|+-+ |. +++.+...
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G-~~V~l~-d~--~~~~l~~~ 344 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAG-IPVRIK-DI--NPQGINNA 344 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcC-CeEEEE-eC--CHHHHHHH
Confidence 489999999999999987763 44 776554 44 45544333
No 236
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.45 E-value=3.2 Score=38.29 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=25.7
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
-||||+|.|.+|+.++..+.... ++|+..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~l~D 37 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG-LDVVAWD 37 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEEEe
Confidence 47999999999999999988876 8876654
No 237
>PLN02427 UDP-apiose/xylose synthase
Probab=79.35 E-value=3.2 Score=38.49 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=28.5
Q ss_pred ceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 6 KIKIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 6 ~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
+|||.|.| +|.||+.+++.|.+++..+|+++...
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~ 48 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVY 48 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecC
Confidence 46899999 99999999999998744788888643
No 238
>PRK06988 putative formyltransferase; Provisional
Probab=79.31 E-value=2.7 Score=38.47 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=27.4
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|+|||.+.|++.+|...++.|.++. +++++|-
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~-~~i~~Vv 32 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARG-VDVALVV 32 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCC-CCEEEEE
Confidence 5589999999999999999998875 7877764
No 239
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=78.99 E-value=9.4 Score=34.18 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEc-CChHHHHHHHHHHcCCC-ceEEEe
Q 025639 11 ING-FGRIGRLVARVALQRDD-VELVAV 36 (250)
Q Consensus 11 I~G-~G~IGr~~lr~l~~~~~-~~vvai 36 (250)
|-| .|.+|+.+++.|.++++ .+|.++
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~ 29 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVL 29 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEc
Confidence 567 99999999999998875 444433
No 240
>PRK07201 short chain dehydrogenase; Provisional
Probab=78.94 E-value=17 Score=36.05 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=26.3
Q ss_pred eeEEEEc-CChHHHHHHHHHHc-CCCceEEEeeCC
Q 025639 7 IKIGING-FGRIGRLVARVALQ-RDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~-~~~~~vvaind~ 39 (250)
|||-|-| +|.||+.+++.|.+ ....+|.++...
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~ 35 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRR 35 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 3799999 99999999999984 224788777653
No 241
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=78.85 E-value=5.9 Score=36.09 Aligned_cols=85 Identities=22% Similarity=0.187 Sum_probs=50.8
Q ss_pred ceeEEEEc-CChHHHHHHHHHHcCCCc-eEEEeeCCCCChhHHhhhhc-cccccccCCCcceEEeCCeeeEECCEEEEEE
Q 025639 6 KIKIGING-FGRIGRLVARVALQRDDV-ELVAVNDPFISTDYMTYMFK-YDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (250)
Q Consensus 6 ~~kVaI~G-~G~IGr~~lr~l~~~~~~-~vvaind~~~~~~~~a~ll~-ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~ 82 (250)
+-||-|.| +|.+|+.+++.|.+.+ + ++..||-. . |+... | ++.+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g-~~~v~pVnp~-----------~~~~~v~-------------------G--~~~y 54 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYG-TNIVGGVTPG-----------KGGTTVL-------------------G--LPVF 54 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCC-CCEEEEECCC-----------CCCCeEe-------------------C--eecc
Confidence 46899999 9999999999998765 4 33356521 0 11111 1 1122
Q ss_pred ecCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEE
Q 025639 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (250)
Q Consensus 83 ~~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvi 126 (250)
++.+++|-. .++|+++-+.+.....+..+...+.|+|.+||
T Consensus 55 --~sv~dlp~~-~~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI 95 (291)
T PRK05678 55 --NTVAEAVEA-TGANASVIYVPPPFAADAILEAIDAGIDLIVC 95 (291)
T ss_pred --CCHHHHhhc-cCCCEEEEEcCHHHHHHHHHHHHHCCCCEEEE
Confidence 123334310 02688888877766666667777777776444
No 242
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=78.78 E-value=14 Score=33.70 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=22.0
Q ss_pred eEEEEcCChHHHHHHHHHHc-CCCceEEEee
Q 025639 8 KIGINGFGRIGRLVARVALQ-RDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~-~~~~~vvain 37 (250)
+|.|.|.|.||...++++.. ...-.++++.
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~ 196 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYPESKLVVFG 196 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 69999999999988887664 3334565554
No 243
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=78.52 E-value=12 Score=34.32 Aligned_cols=30 Identities=13% Similarity=0.548 Sum_probs=24.3
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+|.|.|.|.||...++++.... .+++++..
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~G-a~vi~~~~ 215 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFG-LKVTVISS 215 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 6899999999999999887776 67666543
No 244
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=78.51 E-value=19 Score=34.44 Aligned_cols=32 Identities=28% Similarity=0.594 Sum_probs=29.0
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.||+|-|||.+|+.+++.|.+.. -+||++.|.
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~G-Akvva~sds 239 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELG-AKVVAVSDS 239 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcC-CEEEEEEcC
Confidence 68999999999999999997765 899999987
No 245
>PRK06444 prephenate dehydrogenase; Provisional
Probab=78.37 E-value=2.7 Score=36.07 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCC
Q 025639 7 IKIGING-FGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~ 29 (250)
|||+|+| +|+.||.+.+.+.+.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g 24 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNG 24 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCC
Confidence 4899999 8999999999887654
No 246
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=78.22 E-value=20 Score=32.75 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=23.6
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvain 37 (250)
+|.|.|.|.+|...++++.... .+ ++++.
T Consensus 179 ~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~ 208 (358)
T TIGR03451 179 SVAVIGCGGVGDAAIAGAALAG-ASKIIAVD 208 (358)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 7899999999999999887776 54 66664
No 247
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=78.18 E-value=3.4 Score=37.11 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=26.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.||||+|.|.+|..+++.+..+. ++|+..+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~d~ 35 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG-MDVWLLDS 35 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CeEEEEeC
Confidence 47999999999999999998876 78776653
No 248
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=78.11 E-value=1.8 Score=40.33 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=19.7
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
-+|+|+|+|+||+.+++-|....
T Consensus 163 K~vgilG~G~IG~~ia~rL~~Fg 185 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPFG 185 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhcc
Confidence 58999999999999998876543
No 249
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.04 E-value=3.4 Score=36.83 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=24.6
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC---CceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRD---DVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~---~~~vvain 37 (250)
|||+++|.|.+|+.+++.|.+++ ..+++..+
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~ 37 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN 37 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC
Confidence 58999999999999999988764 24555554
No 250
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=77.87 E-value=3.4 Score=36.69 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=25.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|||+|+|.|.+|..+...|.+.. .++..+..
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG-HDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEEC
Confidence 48999999999999999988765 56666653
No 251
>PRK05442 malate dehydrogenase; Provisional
Probab=77.75 E-value=4.6 Score=37.34 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=18.7
Q ss_pred eeEEEEcC-ChHHHHHHHHHHcC
Q 025639 7 IKIGINGF-GRIGRLVARVALQR 28 (250)
Q Consensus 7 ~kVaI~G~-G~IGr~~lr~l~~~ 28 (250)
.||+|.|. |.||..++-.|..+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~ 27 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASG 27 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhh
Confidence 69999995 99999988877654
No 252
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.69 E-value=3.6 Score=36.76 Aligned_cols=32 Identities=25% Similarity=0.494 Sum_probs=25.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCC---ceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDD---VELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~---~~vvaind 38 (250)
+||+|+|+|.+|..+++.|.+.+. .+++.++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 589999999999999999886642 46666654
No 253
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=77.66 E-value=3.4 Score=40.25 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=25.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+|+|.|+|.||+.+++.+.... ++|++.+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~G-a~ViV~e 284 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFG-ARVVVTE 284 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 47999999999999999998776 7766654
No 254
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=77.61 E-value=3.9 Score=37.93 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.1
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
.||.|+|.|.+|..+++.|....
T Consensus 25 ~~VlIiG~GglGs~va~~La~aG 47 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAG 47 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC
Confidence 58999999999999999998776
No 255
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=77.59 E-value=3.2 Score=35.73 Aligned_cols=32 Identities=34% Similarity=0.401 Sum_probs=27.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
++|.|.| +|.+|+.+++.|.++. .+++++..-
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~-~~v~~~~r~ 33 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG-HEVRAAVRN 33 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC-CEEEEEEeC
Confidence 3799999 9999999999999986 787777654
No 256
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.43 E-value=5 Score=36.86 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.1
Q ss_pred eeEEEEcC-ChHHHHHHHHHHcCC
Q 025639 7 IKIGINGF-GRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~-G~IGr~~lr~l~~~~ 29 (250)
|||+|.|. |.||..++..|..++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~ 24 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP 24 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 48999996 999999999888765
No 257
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=77.36 E-value=3.3 Score=38.48 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=25.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.+|||+|+|.+|+.+++.|.... ++++....
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG-~~Vvv~~r 48 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSG-VDVVVGLR 48 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCC-CEEEEEEC
Confidence 58999999999999999998776 77765543
No 258
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=77.33 E-value=12 Score=33.75 Aligned_cols=95 Identities=17% Similarity=0.227 Sum_probs=53.0
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~p 87 (250)
+|.|.|.|.+|+.+++++.... .+++++... .+.+..+-++ | . + -.++.+.-.+.+ ..
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~G-~~vi~~~~~---~~~~~~~~~~----g----~------~--~~i~~~~~~~~~--~~ 223 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKMG-FRTVAISRG---SDKADLARKL----G----A------H--HYIDTSKEDVAE--AL 223 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CeEEEEeCC---hHHHHHHHHc----C----C------c--EEecCCCccHHH--HH
Confidence 6899999999999999888776 677777543 3333333222 1 0 1 111111100000 01
Q ss_pred CCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeC
Q 025639 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (250)
Q Consensus 88 ~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~ 128 (250)
. .| .++|++++++|.-...+.+..+++.+.+-+.+..
T Consensus 224 ~--~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 224 Q--EL--GGAKLILATAPNAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred H--hc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEec
Confidence 1 12 2689999998755555666677766653333433
No 259
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=76.94 E-value=3.5 Score=37.37 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=25.3
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|+|||+|+|.|.||..+.-.|.+.+ .++..+..
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~r 33 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARAG-LPVRLILR 33 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhCC-CCeEEEEe
Confidence 5689999999999998888777664 45555543
No 260
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=76.91 E-value=10 Score=36.51 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=51.0
Q ss_pred eeEEEEcC----ChHHHHHHHHHHcCCCc--eEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEE
Q 025639 7 IKIGINGF----GRIGRLVARVALQRDDV--ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA 80 (250)
Q Consensus 7 ~kVaI~G~----G~IGr~~lr~l~~~~~~--~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~ 80 (250)
-+|+|+|. |.+|+.+++.|.+++ | +|..||-- |+...| . +
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~g-f~g~v~~Vnp~------------~~~i~G-------------------~--~ 53 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGG-YKGKIYPVNPK------------AGEILG-------------------V--K 53 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCC-CCCcEEEECCC------------CCccCC-------------------c--c
Confidence 47999994 889999999998876 5 66667632 122111 1 1
Q ss_pred EEecCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEE
Q 025639 81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (250)
Q Consensus 81 v~~~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvi 126 (250)
++. +.++++ ..+|+++-+++.....+..+...+.|+|.++|
T Consensus 54 ~~~--sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 54 AYP--SVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred ccC--CHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 121 233333 25677777777766666667777777776654
No 261
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=76.77 E-value=3.5 Score=37.16 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.8
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
.+|.|.|.|-+|-.+++.|....
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcC
Confidence 58999999999999999998764
No 262
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=76.63 E-value=4.2 Score=40.61 Aligned_cols=39 Identities=21% Similarity=0.508 Sum_probs=31.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhh
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYM 49 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~l 49 (250)
.+|-|.|+|++||.+.|.|.++. ++++.|.. |++....+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~---d~~~v~~~ 439 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANK-MRITVLER---DISAVNLM 439 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCC-CCEEEEEC---CHHHHHHH
Confidence 57999999999999999998875 88888863 46654444
No 263
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=76.54 E-value=24 Score=32.35 Aligned_cols=136 Identities=13% Similarity=0.196 Sum_probs=68.9
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~p 87 (250)
+|.|+|.|.+|...++++.... ..++++... .+....+++ .+|- . ........ ...
T Consensus 183 ~vlV~G~G~vG~~av~~Ak~~G-~~vi~~~~~---~~~~~~~~~---~~Ga-~----------~~i~~~~~------~~~ 238 (357)
T PLN02514 183 RGGILGLGGVGHMGVKIAKAMG-HHVTVISSS---DKKREEALE---HLGA-D----------DYLVSSDA------AEM 238 (357)
T ss_pred eEEEEcccHHHHHHHHHHHHCC-CeEEEEeCC---HHHHHHHHH---hcCC-c----------EEecCCCh------HHH
Confidence 6889999999999999888776 676666543 222222221 1220 0 01110000 001
Q ss_pred CCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCCCCeEEeecCcccc-CCCCCEEecCChhhhhHHHHH
Q 025639 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEY-KPELDIVSNASCTTNCLAPLA 166 (250)
Q Consensus 88 ~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d~p~iV~gVN~~~~-~~~~~IIs~~sCtT~~la~~l 166 (250)
.+.. .++|+||||+|...+.+.+-..++.|.+-+.+..+.... .++...+ ..+..+.....++..-+.-++
T Consensus 239 ~~~~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~-----~~~~~~~~~~~~~i~g~~~~~~~~~~~~~ 310 (357)
T PLN02514 239 QEAA---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPL-----QFVTPMLMLGRKVITGSFIGSMKETEEML 310 (357)
T ss_pred HHhc---CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCC-----cccHHHHhhCCcEEEEEecCCHHHHHHHH
Confidence 1111 168999999996555555666777676444443332211 1222221 223445555445544555666
Q ss_pred HHHHhhcCee
Q 025639 167 KVIHDKFGIV 176 (250)
Q Consensus 167 ~~L~~~fgI~ 176 (250)
+.+.+. .++
T Consensus 311 ~~~~~g-~l~ 319 (357)
T PLN02514 311 EFCKEK-GLT 319 (357)
T ss_pred HHHHhC-CCc
Confidence 655443 354
No 264
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=76.46 E-value=4 Score=36.58 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=25.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
-||+|+|.|.+|..++..+..+. ++|+.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G-~~V~l~d 33 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG-YDVTIVD 33 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC-CeEEEEe
Confidence 37999999999999999998886 7877665
No 265
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=76.40 E-value=2.7 Score=37.19 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
|||+|+|.|.+|..+++.|.+.+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCC
Confidence 68999999999999999998764
No 266
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=76.21 E-value=11 Score=32.53 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=23.8
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceE
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVEL 33 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~v 33 (250)
+..-|+| +|..|+.+++.+.+.+.|.-
T Consensus 19 ~s~fvlGAtG~~G~~llk~~~E~~~FSK 46 (238)
T KOG4039|consen 19 MSGFVLGATGLCGGGLLKHAQEAPQFSK 46 (238)
T ss_pred cceEEEeccccccHHHHHHHHhccccee
Confidence 5788999 99999999999999987653
No 267
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=76.07 E-value=4.2 Score=38.95 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=26.3
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.|||||+|+|.+|.-+...+.+ . +++++++-
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~-~~V~g~D~ 36 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-S-RQVVGFDV 36 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-C-CEEEEEeC
Confidence 3799999999999999998776 4 89888863
No 268
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=76.03 E-value=4.4 Score=40.68 Aligned_cols=39 Identities=28% Similarity=0.606 Sum_probs=30.7
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhh
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYM 49 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~l 49 (250)
-+|-|.|+||+||.+.|.|.++. ++++.|.. |++.+..+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~---d~~~v~~~ 439 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSG-VKMTVLDH---DPDHIETL 439 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCC-CCEEEEEC---CHHHHHHH
Confidence 47899999999999999999876 88888853 45544433
No 269
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=75.99 E-value=8.1 Score=35.41 Aligned_cols=30 Identities=30% Similarity=0.446 Sum_probs=24.4
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCc-eEEEeeC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDV-ELVAVND 38 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~-~vvaind 38 (250)
+|.|.|.|.+|...++++.... . .++++..
T Consensus 190 ~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~ 220 (369)
T cd08301 190 TVAIFGLGAVGLAVAEGARIRG-ASRIIGVDL 220 (369)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEcC
Confidence 6899999999999999888776 6 5666643
No 270
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.92 E-value=4 Score=36.52 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=29.6
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhh
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMF 50 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll 50 (250)
||+|+|.|.+|+.++..+.++. ++|+.++ . +++.+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G-~~V~~~d-~--~~~~~~~~~ 41 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSG-FQTTLVD-I--KQEQLESAQ 41 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCC-CcEEEEe-C--CHHHHHHHH
Confidence 7999999999999999998775 7776664 3 455544443
No 271
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.74 E-value=7.9 Score=37.33 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=25.1
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
-||+|.|+|+-|+..+|.|.++. .+++ +.|.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g-~~v~-~~d~ 39 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL-PAQA-LTLF 39 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC-CEEE-EEcC
Confidence 48999999999999999999886 5543 3443
No 272
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.54 E-value=8.5 Score=36.88 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=25.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.||+|.|+|+.|+.+++.|..+. .++.+ .|.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G-~~V~~-~D~ 45 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG-AKVTA-FDK 45 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC-CEEEE-ECC
Confidence 48999999999999999999887 66544 443
No 273
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=75.44 E-value=2.5 Score=37.31 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=56.0
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccc-cccccCCCcceEEeCCeeeE-ECC-EEEEEEe
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD-SVHGQWKHNELKVKDEKTLL-FGE-KPVAVFG 83 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~yd-S~~G~~~~~~v~~~~~~~l~-~~g-~~i~v~~ 83 (250)
-||.|+|.|-+|..+++.|....-=++.-+.+-..++..+..-+-|+ +..|+.. .. .... .|. +|- -.+....
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~K-a~--~a~~-~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPK-VE--SARA-ALARINPHIAIETIN 108 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChH-HH--HHHH-HHHHHCCCCEEEEEe
Confidence 58999999999999999998765213333433223344343333331 2234322 11 0000 010 111 1122221
Q ss_pred cC-CCCCCC--cccCCccEEEeecCCCCCHHHHH-HHHHCCCCEEEEeCC
Q 025639 84 FR-NPEEIP--WAKTGAEYVVESTGVFTDKDKAA-AHLKGGAKKVVISAP 129 (250)
Q Consensus 84 ~~-~p~~i~--w~~~~vdiV~~~tg~~~~~~~a~-~~~~~Gak~vvis~~ 129 (250)
.. ++++++ |+ +.|+||+|+..+.++...- ...+.+. .+|++.
T Consensus 109 ~~i~~~~~~~~~~--~~DiVi~~~D~~~~r~~ln~~~~~~~i--p~v~~~ 154 (245)
T PRK05690 109 ARLDDDELAALIA--GHDLVLDCTDNVATRNQLNRACFAAKK--PLVSGA 154 (245)
T ss_pred ccCCHHHHHHHHh--cCCEEEecCCCHHHHHHHHHHHHHhCC--EEEEee
Confidence 11 121111 33 7899999998886665333 2334554 445443
No 274
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=75.42 E-value=2.2 Score=36.50 Aligned_cols=30 Identities=27% Similarity=0.280 Sum_probs=24.0
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCc-eEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~-~vvain 37 (250)
-||.|+|.|-+|..+++.|.... + .+..+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~G-v~~i~lvD 52 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAG-VGTIVIVD 52 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcC-CCeEEEec
Confidence 58999999999999999998776 3 444444
No 275
>PRK07877 hypothetical protein; Provisional
Probab=75.13 E-value=1.5 Score=44.75 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=56.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCc--eEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeee-EECC-EEEEEE
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDV--ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTL-LFGE-KPVAVF 82 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~--~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l-~~~g-~~i~v~ 82 (250)
-||+|+|.| +|-.++..|.... + +++-|..-..++.++-..+-..+..|+.+ ++...+ .| .+|- -+|..+
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraG-vvG~l~lvD~D~ve~sNLnRq~~~~~diG~~K---v~~a~~-~l~~inp~i~v~~~ 181 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEG-LCGELRLADFDTLELSNLNRVPAGVFDLGVNK---AVVAAR-RIAELDPYLPVEVF 181 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHcc-CCCeEEEEcCCEEcccccccccCChhhcccHH---HHHHHH-HHHHHCCCCEEEEE
Confidence 589999999 8999998888654 2 22223211122222223221112235432 111111 11 1222 133333
Q ss_pred ecC-CCCCCCcccCCccEEEeecCCCCCHHHHH-HHHHCCCCEEEEeCCC
Q 025639 83 GFR-NPEEIPWAKTGAEYVVESTGVFTDKDKAA-AHLKGGAKKVVISAPS 130 (250)
Q Consensus 83 ~~~-~p~~i~w~~~~vdiV~~~tg~~~~~~~a~-~~~~~Gak~vvis~~s 130 (250)
.+. ++++++=-..++|+|+||+..|.++-..- ...+.|. -+|++++
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~i--P~i~~~~ 229 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRI--PVLMATS 229 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEcC
Confidence 321 23332200137999999999987775443 3445564 4555543
No 276
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=75.12 E-value=5.8 Score=35.24 Aligned_cols=90 Identities=19% Similarity=0.348 Sum_probs=50.4
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
+|-|+| .|.+|+.+++++.... .+++++... .+...++.++ |. + .+ ++.+.-.+.+ .
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s---~~~~~~l~~~----Ga----------~-~v-i~~~~~~~~~--~ 203 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGS---DDKVAWLKEL----GF----------D-AV-FNYKTVSLEE--A 203 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEeCC---HHHHHHHHHc----CC----------C-EE-EeCCCccHHH--H
Confidence 688999 8999999999888776 777766543 4444444322 20 1 01 1100000000 0
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCC
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak 122 (250)
... +...++|+|||++|. ...+.+..+++.+.+
T Consensus 204 v~~--~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~ 236 (329)
T cd08294 204 LKE--AAPDGIDCYFDNVGG-EFSSTVLSHMNDFGR 236 (329)
T ss_pred HHH--HCCCCcEEEEECCCH-HHHHHHHHhhccCCE
Confidence 000 112379999999986 444555567766653
No 277
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=74.72 E-value=12 Score=33.98 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=23.6
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
-||-|.| +|++|+.+++-+...+.-.+.+||
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~ 38 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTNIVGGVT 38 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCCEEEEEC
Confidence 5899999 999999998888776523444454
No 278
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.45 E-value=8.7 Score=37.21 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=25.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.||.|.|.|..|+.+++.|..+. .++.+..
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G-~~v~~~D 37 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHG-ARLRVAD 37 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC-CEEEEEc
Confidence 37999999999999999999887 6765543
No 279
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.35 E-value=5.1 Score=36.10 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=25.7
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.||+|+|.|.+|..++..+.... ++|+.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g-~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG-LQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence 48999999999999999988775 7877665
No 280
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=74.26 E-value=4.2 Score=38.43 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=29.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhc
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFK 51 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ 51 (250)
|||+|+|.|.+|..+..++.. . ++|++++- +++.+..+.+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G-~~VigvD~---d~~kv~~l~~ 40 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-N-HEVVALDI---LPSRVAMLND 40 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-C-CcEEEEEC---CHHHHHHHHc
Confidence 389999999999999977664 4 88888863 4555555543
No 281
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=74.16 E-value=4.5 Score=37.15 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=25.7
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.||||+|+|.+|+.+++.|..+. ++++...+.
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG-~~Viv~~~~ 35 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSG-LNVIVGLRK 35 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCC-CeEEEEECc
Confidence 47999999999999999998876 676544443
No 282
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=74.07 E-value=6.7 Score=36.21 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.1
Q ss_pred eeEEEEcC-ChHHHHHHHHHHcCC
Q 025639 7 IKIGINGF-GRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~-G~IGr~~lr~l~~~~ 29 (250)
+||+|+|. |.||..++-.|..++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCC
Confidence 79999995 999999988887665
No 283
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=73.66 E-value=12 Score=34.65 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=29.0
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDPF 40 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~ 40 (250)
|+|-|.| .|-||-...+.|.+.. .++|.+..++
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G-~~vvV~DNL~ 34 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNLS 34 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC-CeEEEEecCC
Confidence 4789999 9999999999999976 8999898874
No 284
>PLN02740 Alcohol dehydrogenase-like
Probab=73.43 E-value=9.8 Score=35.22 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=24.0
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCc-eEEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDV-ELVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~-~vvain 37 (250)
+|.|.|.|.||...++++.... . +++++.
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~ 230 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARG-ASKIIGVD 230 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CCcEEEEc
Confidence 6999999999999999888776 5 466664
No 285
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=73.08 E-value=2.9 Score=36.88 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.8
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
.||.|+|.|-+|..+++.|....
T Consensus 25 ~~VlvvG~GglGs~va~~La~~G 47 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAG 47 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcC
Confidence 58999999999999999998765
No 286
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=73.03 E-value=4.4 Score=39.37 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=27.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.+|||+|+|.+|..+++.|.++. ++|.+.|..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V~v~dr~ 33 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG-FKISVYNRT 33 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC-CeEEEEeCC
Confidence 48999999999999999999887 787777643
No 287
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=72.97 E-value=4.3 Score=36.27 Aligned_cols=123 Identities=16% Similarity=0.185 Sum_probs=61.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC--CceEEEeeCCC-CChhHHhhhhccccccccCCCcceEEeCCeeeEECC------E
Q 025639 7 IKIGINGFGRIGRLVARVALQRD--DVELVAVNDPF-ISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE------K 77 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~--~~~vvaind~~-~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g------~ 77 (250)
-+|.|.|.|=||--.+++|.... .+.|+=..+.+ .+.|-..+.+ -+++|+-. -++. ++. -..||= .
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~--~~~iGk~K-v~vm-~er-i~~InP~c~V~~~ 105 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHAL--LGDIGKPK-VEVM-KER-IKQINPECEVTAI 105 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhh--hhhcccHH-HHHH-HHH-HHhhCCCceEeeh
Confidence 37999999999999999999764 34433333322 2333333444 23355532 1111 111 011211 1
Q ss_pred EEEEEecCCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCC--CCeEE
Q 025639 78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFV 137 (250)
Q Consensus 78 ~i~v~~~~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d--~p~iV 137 (250)
..-+ .+++.+++-. .+.|||+||......+...-.+...-..+||-|...+. +|+-+
T Consensus 106 ~~f~-t~en~~~~~~--~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTri 164 (263)
T COG1179 106 NDFI-TEENLEDLLS--KGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTRI 164 (263)
T ss_pred Hhhh-CHhHHHHHhc--CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCceE
Confidence 1111 1122333333 27999999998887775444433333224444444432 67543
No 288
>PLN02494 adenosylhomocysteinase
Probab=72.79 E-value=5.4 Score=38.90 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=25.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
-+|+|.|+|.||+.+++.+.... ..|++++
T Consensus 255 KtVvViGyG~IGr~vA~~aka~G-a~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAG-ARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 47999999999999999988775 6776664
No 289
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=72.65 E-value=5.5 Score=38.05 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=25.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
-+|+|.|+|.||+.+++.+.... .+++++.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~G-a~ViV~d 225 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMG-ARVIVTE 225 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCc-CEEEEEe
Confidence 48999999999999999988765 7876664
No 290
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=72.60 E-value=6.1 Score=34.18 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=26.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~R 49 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKG-FAVKAGVR 49 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCC-CEEEEEec
Confidence 5899999 9999999999998876 78777654
No 291
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=72.36 E-value=10 Score=31.14 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=26.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.||.|.|.|++|+..++++...+ .+++...+.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~ 52 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDER 52 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred eEEEEECCCHHHHHHHHHHhHCC-CEEEeccCC
Confidence 79999999999999999999887 887777654
No 292
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=71.85 E-value=15 Score=34.08 Aligned_cols=132 Identities=11% Similarity=0.152 Sum_probs=65.9
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~p 87 (250)
+|.|.|.|.+|...++++.... .+++++... +.+....+.++ | . + -.++.+.. +..
T Consensus 181 ~VlV~G~G~vG~~avq~Ak~~G-a~Vi~~~~~--~~~~~~~a~~l----G----a------~--~~i~~~~~-----~~v 236 (375)
T PLN02178 181 RLGVNGLGGLGHIAVKIGKAFG-LRVTVISRS--SEKEREAIDRL----G----A------D--SFLVTTDS-----QKM 236 (375)
T ss_pred EEEEEcccHHHHHHHHHHHHcC-CeEEEEeCC--hHHhHHHHHhC----C----C------c--EEEcCcCH-----HHH
Confidence 6899999999999999888776 677666433 11111121111 1 0 0 11111100 000
Q ss_pred CCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCCCCCCeEEeecCcccc-CCCCCEEecCChhhhhHHHHH
Q 025639 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEY-KPELDIVSNASCTTNCLAPLA 166 (250)
Q Consensus 88 ~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s~d~p~iV~gVN~~~~-~~~~~IIs~~sCtT~~la~~l 166 (250)
.+.. .++|+||||+|.-...+.+-..++.|-+-+.+..+..+. .++...+ ..+..|...-.++...+.-++
T Consensus 237 ~~~~---~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~-----~~~~~~~~~~~~~i~g~~~~~~~~~~~~~ 308 (375)
T PLN02178 237 KEAV---GTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPL-----DLPIFPLVLGRKMVGGSQIGGMKETQEML 308 (375)
T ss_pred HHhh---CCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCC-----ccCHHHHHhCCeEEEEeCccCHHHHHHHH
Confidence 0111 158999999997544455556666665334343332211 1222221 123344444444445666666
Q ss_pred HHHHh
Q 025639 167 KVIHD 171 (250)
Q Consensus 167 ~~L~~ 171 (250)
+.+.+
T Consensus 309 ~l~~~ 313 (375)
T PLN02178 309 EFCAK 313 (375)
T ss_pred HHHHh
Confidence 66653
No 293
>PRK07680 late competence protein ComER; Validated
Probab=71.79 E-value=8.6 Score=34.06 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
|||+|+|.|.+|+.+++.|.+..
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g 23 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESG 23 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCC
Confidence 37999999999999999988765
No 294
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=71.79 E-value=5.6 Score=35.45 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=24.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|||+|+|.|.+|..+...|.+.. .+|..+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CceEEEe
Confidence 48999999999999999998765 5555554
No 295
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=71.68 E-value=26 Score=30.22 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=23.6
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvain 37 (250)
+|.|+|.|.+|+.+++.+.... .. ++++.
T Consensus 100 ~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~ 129 (277)
T cd08255 100 RVAVVGLGLVGLLAAQLAKAAG-AREVVGVD 129 (277)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCcEEEEC
Confidence 6889999999999988887765 66 66664
No 296
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=71.46 E-value=6.1 Score=35.50 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=26.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVVILDN 32 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC-CeEEEEec
Confidence 4799999 9999999999998876 78877753
No 297
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=71.42 E-value=35 Score=30.82 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=23.6
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCc-eEEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDV-ELVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~-~vvain 37 (250)
+|.|+|.|.+|+..++++.... . .++++.
T Consensus 175 ~vlI~g~g~vG~~a~q~a~~~G-~~~v~~~~ 204 (351)
T cd08233 175 TALVLGAGPIGLLTILALKAAG-ASKIIVSE 204 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 6899999999999999888776 6 555553
No 298
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=71.37 E-value=6 Score=36.73 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=27.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 22 ~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~r 53 (370)
T PLN02695 22 LRICITGAGGFIASHIARRLKAEG-HYIIASDW 53 (370)
T ss_pred CEEEEECCccHHHHHHHHHHHhCC-CEEEEEEe
Confidence 6899999 9999999999999886 78888764
No 299
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=71.35 E-value=12 Score=35.37 Aligned_cols=30 Identities=43% Similarity=0.609 Sum_probs=24.4
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
||.|+|.|.+|+.+++.|.++. .+|. ++|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G-~~V~-~sD~ 30 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG-AEVT-VTDL 30 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC-CEEE-EEeC
Confidence 5889999999999999999887 6654 4554
No 300
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=71.29 E-value=6.3 Score=37.77 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=27.6
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.||.|+|.|-+|+.+++.|.+++--.|..+|..
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT 211 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRT 211 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 479999999999999999999875566666765
No 301
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=70.88 E-value=7.1 Score=38.45 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=27.2
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+=++-|.|+|++||.+.|.|.+++ .+++.|..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~ 448 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAG-IPLVVIET 448 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCC-CCEEEEEC
Confidence 346889999999999999999876 78888864
No 302
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=70.79 E-value=26 Score=34.54 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=24.8
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
-||.|.|.|.+|...++.+.... -+|+++ |.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~-D~ 196 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLG-AIVRAF-DT 196 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEEEE-eC
Confidence 58999999999999999888776 355554 44
No 303
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=70.77 E-value=4.8 Score=37.00 Aligned_cols=22 Identities=36% Similarity=0.320 Sum_probs=19.9
Q ss_pred eEEEEcCChHHHHHHHHHHcCC
Q 025639 8 KIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
||.|+|.|-+|-.+++.|....
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG 22 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999998765
No 304
>PRK08655 prephenate dehydrogenase; Provisional
Probab=70.73 E-value=6.2 Score=37.89 Aligned_cols=30 Identities=30% Similarity=0.560 Sum_probs=24.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|||+|+| +|.+|+.+.+.|.++. +++..++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-CEEEEEE
Confidence 4899998 9999999999998876 6766554
No 305
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=70.60 E-value=5.6 Score=35.04 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.8
Q ss_pred eEEEEcCChHHHHHHHHHHcCC
Q 025639 8 KIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
||.|+|.|-+|-.+++.|...+
T Consensus 1 kVlvvG~GGlG~eilk~La~~G 22 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG 22 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999998765
No 306
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=70.54 E-value=6.9 Score=38.08 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=30.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC-CceEEEeeCCCCChhHHhhh
Q 025639 7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYM 49 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~-~~~vvaind~~~~~~~~a~l 49 (250)
|||+|+|.|.+|..+.-++.++. .++++++. . +++.+..+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD-~--~~~~v~~l 42 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVD-I--SVPRIDAW 42 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE-C--CHHHHHHH
Confidence 68999999999999888888763 48888884 2 45544433
No 307
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.48 E-value=19 Score=34.10 Aligned_cols=93 Identities=24% Similarity=0.243 Sum_probs=52.8
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
.+|.|.|.|.+|..+++.|.++. .+|+++... ..+.+...++ . +.-.| ++++....
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G-~~V~~~d~~--~~~~~~~~~~-----------~--------l~~~~--~~~~~~~~ 61 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG-AKVILTDEK--EEDQLKEALE-----------E--------LGELG--IELVLGEY 61 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCC--chHHHHHHHH-----------H--------HHhcC--CEEEeCCc
Confidence 58999999999999999999987 676655332 1111111110 0 00001 11111111
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeC
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~ 128 (250)
+++. ..+.|+|+-++|.....+....+.+.|. .|++-
T Consensus 62 ~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i--~~~~~ 98 (450)
T PRK14106 62 PEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI--EVIGE 98 (450)
T ss_pred chhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC--cEEeH
Confidence 1111 1268999999998777766666666775 45543
No 308
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=70.44 E-value=5 Score=36.18 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=26.8
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCC--------CceEEEeeCC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRD--------DVELVAVNDP 39 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~--------~~~vvaind~ 39 (250)
.++|+++|+|-||+.+++.+.... -+.+|++.+.
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 378999999999999998765321 3788888875
No 309
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=70.36 E-value=13 Score=32.91 Aligned_cols=95 Identities=14% Similarity=0.177 Sum_probs=51.5
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~p 87 (250)
+|-|+|.|.+|+.+++++.... ..++++... ++...++-++.. + .+ ++.+.- ...+. .
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s---~~~~~~~~~~g~--------------~-~~-~~~~~~-~~~~~-~ 225 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIK---EEKLELAKELGA--------------D-EV-LNSLDD-SPKDK-K 225 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CEEEEEcCC---HHHHHHHHHhCC--------------C-EE-EcCCCc-CHHHH-H
Confidence 6888899999999999888776 777666433 443333322111 0 01 100000 00000 0
Q ss_pred CCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEE
Q 025639 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (250)
Q Consensus 88 ~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvi 126 (250)
.... ..++|+|++|.|.....+.+..+++.|.+-+.+
T Consensus 226 ~~~~--~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 226 AAGL--GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHhc--CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 0011 136999999998654555666788777633333
No 310
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=69.92 E-value=13 Score=34.77 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=51.0
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEE-EEEecCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV-AVFGFRN 86 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i-~v~~~~~ 86 (250)
.|+|.|.|-||-..++-+..-..=.|+||. + +++-+....++.-| =.+|.+.. .+.+ -
T Consensus 188 tvaV~GlGgVGlaaI~gA~~agA~~IiAvD-~--~~~Kl~~A~~fGAT----------------~~vn~~~~~~vv~--~ 246 (366)
T COG1062 188 TVAVFGLGGVGLAAIQGAKAAGAGRIIAVD-I--NPEKLELAKKFGAT----------------HFVNPKEVDDVVE--A 246 (366)
T ss_pred eEEEEeccHhHHHHHHHHHHcCCceEEEEe-C--CHHHHHHHHhcCCc----------------eeecchhhhhHHH--H
Confidence 599999999999888877765556788884 3 34444443333222 12332222 1110 0
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHH
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK 118 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~ 118 (250)
..++ | +.|+|++|||+|.-..++.+=....
T Consensus 247 i~~~-T-~gG~d~~~e~~G~~~~~~~al~~~~ 276 (366)
T COG1062 247 IVEL-T-DGGADYAFECVGNVEVMRQALEATH 276 (366)
T ss_pred HHHh-c-CCCCCEEEEccCCHHHHHHHHHHHh
Confidence 1111 2 2489999999998776665543333
No 311
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.86 E-value=28 Score=33.60 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=24.8
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.||.|.|+|..|+.+++.|.... .++.+.+
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G-~~V~~~D 45 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELG-CDVVVAD 45 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC-CEEEEEC
Confidence 37999999999999999999887 5655543
No 312
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=69.86 E-value=7.1 Score=35.23 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=21.6
Q ss_pred EEEEcCChHHHHHHHHHHcCCCceEEEe
Q 025639 9 IGINGFGRIGRLVARVALQRDDVELVAV 36 (250)
Q Consensus 9 VaI~G~G~IGr~~lr~l~~~~~~~vvai 36 (250)
|+|+|.|.+|..+..++..+.-.+++-+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~ 28 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLL 28 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 6899999999999888876641265555
No 313
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=69.64 E-value=13 Score=34.14 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=23.7
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCc-eEEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDV-ELVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~-~vvain 37 (250)
+|.|.|.|.||...++++.... . .++++.
T Consensus 188 ~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~ 217 (368)
T TIGR02818 188 TVAVFGLGGIGLSVIQGARMAK-ASRIIAID 217 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 6899999999999999887765 5 566664
No 314
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.51 E-value=7.5 Score=34.78 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=25.1
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.||+|+|.|.+|..++..+..+. .+|+.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G-~~V~l~d 33 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG-FDVTIYD 33 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC-CeEEEEe
Confidence 48999999999999999988775 6766664
No 315
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=69.16 E-value=9.8 Score=36.11 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=20.9
Q ss_pred ceeEEEEcC-ChHHHHHHHHHHcCC
Q 025639 6 KIKIGINGF-GRIGRLVARVALQRD 29 (250)
Q Consensus 6 ~~kVaI~G~-G~IGr~~lr~l~~~~ 29 (250)
++||+|.|. |.||..++-.|..++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 489999996 999999999888665
No 316
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=69.01 E-value=16 Score=33.05 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=23.0
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvain 37 (250)
+|.|.|.|.+|+..++++.... .+ ++++.
T Consensus 163 ~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~ 192 (347)
T PRK10309 163 NVIIIGAGTIGLLAIQCAVALG-AKSVTAID 192 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEC
Confidence 7999999999999998888776 65 44443
No 317
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=68.81 E-value=8.5 Score=36.13 Aligned_cols=32 Identities=31% Similarity=0.524 Sum_probs=27.6
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
+||.|.| +|.||+.+++.|.++. .+|+++...
T Consensus 61 ~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R~ 93 (390)
T PLN02657 61 VTVLVVGATGYIGKFVVRELVRRG-YNVVAVARE 93 (390)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEec
Confidence 6899999 9999999999999886 788777643
No 318
>PRK06545 prephenate dehydrogenase; Validated
Probab=68.73 E-value=6.4 Score=36.58 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=20.3
Q ss_pred eEEEEcCChHHHHHHHHHHcCC
Q 025639 8 KIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
||+|+|+|.||..+.+.|..+.
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G 23 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAG 23 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcC
Confidence 7999999999999999998775
No 319
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=68.40 E-value=6.3 Score=38.60 Aligned_cols=128 Identities=12% Similarity=0.207 Sum_probs=68.6
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhc-ccccccc----CCCcceE-EeC---CeeeEE---
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFK-YDSVHGQ----WKHNELK-VKD---EKTLLF--- 74 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~-ydS~~G~----~~~~~v~-~~~---~~~l~~--- 74 (250)
.+||++|+|..|+.+++.|.++. ++|..-|.. ++-..-+.+ ... .|. .. .+++ +.. +..+++
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G-~~V~V~NRt---~~k~~~l~~~~~~-~Ga~~~~~a-~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKG-FPISVYNRT---TSKVDETVERAKK-EGNLPLYGF-KDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCC-CeEEEECCC---HHHHHHHHHhhhh-cCCcccccC-CCHHHHHhcCCCCCEEEEEC
Confidence 58999999999999999999887 898877754 333323321 000 010 00 1100 100 001111
Q ss_pred -CCEEEE-EEecCCCCCCCcccCCccEEEeecCCC--CCHHHHHHHHHCCCCEEEEeCCCC-------CCCeEEeecCcc
Q 025639 75 -GEKPVA-VFGFRNPEEIPWAKTGAEYVVESTGVF--TDKDKAAAHLKGGAKKVVISAPSK-------DAPMFVVGVNEK 143 (250)
Q Consensus 75 -~g~~i~-v~~~~~p~~i~w~~~~vdiV~~~tg~~--~~~~~a~~~~~~Gak~vvis~~s~-------d~p~iV~gVN~~ 143 (250)
+++.+. |... -++-- ..=|+++|++-.. .+.+.++.+.+.|+ -.+++|-. .-|++++|=+.+
T Consensus 81 ~~~~aV~~Vi~g----l~~~l-~~G~iiID~sT~~~~~t~~~~~~l~~~Gi--~fldapVSGG~~gA~~G~~im~GG~~~ 153 (493)
T PLN02350 81 KAGAPVDQTIKA----LSEYM-EPGDCIIDGGNEWYENTERRIKEAAEKGL--LYLGMGVSGGEEGARNGPSLMPGGSFE 153 (493)
T ss_pred CCcHHHHHHHHH----HHhhc-CCCCEEEECCCCCHHHHHHHHHHHHHcCC--eEEeCCCcCCHHHhcCCCeEEecCCHH
Confidence 221110 0000 01111 1238999998653 44455556667787 46777731 356888998887
Q ss_pred ccCC
Q 025639 144 EYKP 147 (250)
Q Consensus 144 ~~~~ 147 (250)
.++.
T Consensus 154 a~~~ 157 (493)
T PLN02350 154 AYKN 157 (493)
T ss_pred HHHH
Confidence 7753
No 320
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.20 E-value=11 Score=34.82 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.9
Q ss_pred eeEEEEcC-ChHHHHHHHHHHcCC
Q 025639 7 IKIGINGF-GRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~-G~IGr~~lr~l~~~~ 29 (250)
.||+|.|. |.||..++..|..++
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~ 24 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGE 24 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC
Confidence 48999995 999999999888764
No 321
>PRK08219 short chain dehydrogenase; Provisional
Probab=68.20 E-value=7.7 Score=32.35 Aligned_cols=31 Identities=23% Similarity=0.162 Sum_probs=25.7
Q ss_pred ceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 6 KIKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 6 ~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
++++-|.| +|.+|+.+++.|.++ .+++++..
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r 34 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT--HTLLLGGR 34 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeC
Confidence 35799999 999999999998877 67777754
No 322
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=67.70 E-value=53 Score=29.49 Aligned_cols=86 Identities=19% Similarity=0.320 Sum_probs=48.4
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~p 87 (250)
+|.|.|.|.+|+.+++++.... ..++.+... .+...++.++ | . + ..++.+.... .
T Consensus 172 ~vlV~g~g~vG~~~~~~a~~~G-~~v~~~~~~---~~~~~~~~~~----g--~--------~--~vi~~~~~~~-----~ 226 (337)
T cd05283 172 RVGVVGIGGLGHLAVKFAKALG-AEVTAFSRS---PSKKEDALKL----G--A--------D--EFIATKDPEA-----M 226 (337)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CeEEEEcCC---HHHHHHHHHc----C--C--------c--EEecCcchhh-----h
Confidence 6888889999999988877765 676666432 3333333211 1 0 0 1111110000 0
Q ss_pred CCCCcccCCccEEEeecCCCCCHHHHHHHHHCCC
Q 025639 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (250)
Q Consensus 88 ~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Ga 121 (250)
..+ ..++|+||+|+|.-...+.+..+++.+.
T Consensus 227 ~~~---~~~~d~v~~~~g~~~~~~~~~~~l~~~G 257 (337)
T cd05283 227 KKA---AGSLDLIIDTVSASHDLDPYLSLLKPGG 257 (337)
T ss_pred hhc---cCCceEEEECCCCcchHHHHHHHhcCCC
Confidence 111 1379999999987644566667776655
No 323
>PRK06046 alanine dehydrogenase; Validated
Probab=67.68 E-value=13 Score=34.06 Aligned_cols=34 Identities=29% Similarity=0.231 Sum_probs=29.5
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
..+|+|.|+|..|+..++++...+.++.+.|-+.
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r 162 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR 162 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC
Confidence 3689999999999999999886666999999876
No 324
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=67.59 E-value=7.9 Score=35.26 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=23.8
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.||+|+|+|.+|+.+++.|....--++..++
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~ 209 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIAN 209 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 6899999999999999998875423444444
No 325
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=67.40 E-value=25 Score=34.66 Aligned_cols=29 Identities=21% Similarity=0.098 Sum_probs=23.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEe
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvai 36 (250)
-||.|.|.|.+|+..++.+.... -.++++
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG-A~V~v~ 193 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG-AIVRAF 193 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999999999999888765 344444
No 326
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=67.37 E-value=7.6 Score=34.40 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=26.7
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
||.|.| +|.||+.+++.|.+++ .+++++...
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEec
Confidence 799999 9999999999999886 788777643
No 327
>PRK10083 putative oxidoreductase; Provisional
Probab=67.34 E-value=29 Score=31.00 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=21.7
Q ss_pred eEEEEcCChHHHHHHHHHHc-CCCceEEEeeC
Q 025639 8 KIGINGFGRIGRLVARVALQ-RDDVELVAVND 38 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~-~~~~~vvaind 38 (250)
+|.|+|.|.+|+.+++++.. .+ ...+.+.+
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~ 193 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKGVYN-VKAVIVAD 193 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHhCC-CCEEEEEc
Confidence 68999999999999887764 35 54333333
No 328
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=67.22 E-value=8.2 Score=37.10 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=24.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+|+|.|+|.||+.+++.+.... ..|+.++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G-a~ViV~d 242 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG-ARVIVTE 242 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEc
Confidence 47999999999999999998776 6765553
No 329
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=66.96 E-value=14 Score=33.96 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=23.0
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvain 37 (250)
+|.|+|.|.+|+.+++++.... .+ ++++.
T Consensus 189 ~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~ 218 (365)
T cd08278 189 SIAVFGAGAVGLAAVMAAKIAG-CTTIIAVD 218 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 6899999999999988888776 54 55554
No 330
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=66.92 E-value=8 Score=33.79 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=25.2
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
||.|.| +|.||+.+++.|.++. .+++++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEEeCC
Confidence 588999 9999999999998876 78777653
No 331
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=66.88 E-value=29 Score=30.68 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=51.6
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
+|.|+| .|.+|+.+++++.... +.++++... .+...++.++ |- . -.++.+.. . .+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g-~~v~~~~~~---~~~~~~~~~~----g~----------~--~v~~~~~~--~-~~~ 205 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLG-YEVVASTGK---ADAADYLKKL----GA----------K--EVIPREEL--Q-EES 205 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCC-CeEEEEecC---HHHHHHHHHc----CC----------C--EEEcchhH--H-HHH
Confidence 689999 6999999999888776 777766543 3333333211 10 0 11111110 0 000
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEe
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis 127 (250)
... +...++|+|+||+|. ...+.+-.+++.+.+-+.+.
T Consensus 206 ~~~--~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 206 IKP--LEKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred HHh--hccCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEEe
Confidence 001 112368999999987 45556667776665333333
No 332
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=66.74 E-value=21 Score=31.70 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=23.0
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvain 37 (250)
+|.|+|.|.+|+.+++++.... +. ++++.
T Consensus 162 ~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~ 191 (334)
T cd08234 162 SVLVFGAGPIGLLLAQLLKLNG-ASRVTVAE 191 (334)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEC
Confidence 6889999999999999888776 65 44443
No 333
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=66.65 E-value=8.7 Score=35.11 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=27.6
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+||-|-| +|.||+.+++.|.+++ .+|+++..
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~ 47 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLN-QTVIGLDN 47 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 5899999 9999999999999886 78888864
No 334
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=66.57 E-value=18 Score=31.60 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=24.3
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEeeC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAVND 38 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvaind 38 (250)
+|.|+|.|.+|+.+++++.... ++ ++++..
T Consensus 132 ~vlI~g~g~vg~~~~~la~~~g-~~~v~~~~~ 162 (312)
T cd08269 132 TVAVIGAGFIGLLFLQLAAAAG-ARRVIAIDR 162 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEECC
Confidence 6899999999999999888775 77 666643
No 335
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=66.54 E-value=11 Score=36.45 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.5
Q ss_pred ceeEEEEcC-ChHHHHHHHHHHcC
Q 025639 6 KIKIGINGF-GRIGRLVARVALQR 28 (250)
Q Consensus 6 ~~kVaI~G~-G~IGr~~lr~l~~~ 28 (250)
.+||+|.|. |.||-.++-.|..+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 389999996 99999999988876
No 336
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=66.45 E-value=20 Score=32.45 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.6
Q ss_pred EEEEcCChHHHHHHHHHHcCC
Q 025639 9 IGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 9 VaI~G~G~IGr~~lr~l~~~~ 29 (250)
|+|+|.|.||..++-.+...+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~ 21 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKG 21 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcC
Confidence 589999999999998888776
No 337
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=66.38 E-value=48 Score=30.95 Aligned_cols=92 Identities=15% Similarity=0.330 Sum_probs=56.9
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~p 87 (250)
+|+|.|+|-+|...++.+.... .+++++... ++.+....+. | . ...++.+ ++
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~---~~K~e~a~~l----G-----------A-d~~i~~~--------~~ 220 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAMG-AEVIAITRS---EEKLELAKKL----G-----------A-DHVINSS--------DS 220 (339)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CeEEEEeCC---hHHHHHHHHh----C-----------C-cEEEEcC--------Cc
Confidence 7999999999998888877666 999999754 3322222211 1 1 1223221 11
Q ss_pred CCCC-cccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCC
Q 025639 88 EEIP-WAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (250)
Q Consensus 88 ~~i~-w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~ 129 (250)
+.+. ..+ -+|+++++.+ ..+.+.+-..++.|-+-|++-.+
T Consensus 221 ~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 221 DALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 1111 111 2899999999 77887777788766545555555
No 338
>PLN02240 UDP-glucose 4-epimerase
Probab=66.33 E-value=9.2 Score=34.54 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=27.1
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~ 37 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDN 37 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 5899999 9999999999999886 78888753
No 339
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=66.27 E-value=8.5 Score=34.91 Aligned_cols=29 Identities=34% Similarity=0.436 Sum_probs=23.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEe
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAV 36 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvai 36 (250)
.||-|.| +|.||+.+++.|.++. .+++.+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g-~~~v~~ 31 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET-SDAVVV 31 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC-CCEEEE
Confidence 4899999 9999999999999886 454444
No 340
>PLN02827 Alcohol dehydrogenase-like
Probab=65.93 E-value=17 Score=33.67 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=22.5
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEe
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAV 36 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvai 36 (250)
+|.|.|.|.||..+++++.... .. ++++
T Consensus 196 ~VlV~G~G~vG~~~iqlak~~G-~~~vi~~ 224 (378)
T PLN02827 196 SVVIFGLGTVGLSVAQGAKLRG-ASQIIGV 224 (378)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 6899999999999999887776 54 5454
No 341
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=65.92 E-value=9.2 Score=34.80 Aligned_cols=30 Identities=37% Similarity=0.453 Sum_probs=23.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCC-ceEEEe
Q 025639 7 IKIGINGFGRIGRLVARVALQRDD-VELVAV 36 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~-~~vvai 36 (250)
|||+|+|.|.||..++.+|..++- -+++.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~ 31 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLV 31 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEE
Confidence 489999999999999999887752 244444
No 342
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.91 E-value=31 Score=32.66 Aligned_cols=89 Identities=22% Similarity=0.232 Sum_probs=51.6
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
.+|.|+|.|..|+..++.|.++. .++.+. |....+.... .+. .|-.+. ....+
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G-~~v~~~-D~~~~~~~~~-----------------------~l~-~g~~~~-~~~~~ 59 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARG-VTPRVI-DTRITPPGLD-----------------------KLP-ENVERH-TGSLN 59 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CeEEEE-cCCCCchhHH-----------------------HHh-cCCEEE-eCCCC
Confidence 47999999999999999888876 676554 4301110000 010 011111 11112
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeC
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~ 128 (250)
+..+. +.|+|+-+.|.-.+......+.+.|+ .|++-
T Consensus 60 ~~~~~----~~d~vv~spgi~~~~~~~~~a~~~g~--~v~~~ 95 (438)
T PRK03806 60 DEWLL----AADLIVASPGIALAHPSLSAAADAGI--EIVGD 95 (438)
T ss_pred HHHhc----CCCEEEECCCCCCCCHHHHHHHHCCC--eEEEH
Confidence 22222 46888888888776666777778888 35553
No 343
>PRK09291 short chain dehydrogenase; Provisional
Probab=65.87 E-value=11 Score=32.26 Aligned_cols=33 Identities=24% Similarity=0.166 Sum_probs=27.1
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|..++-|.| +|.||+.+++.|.++. ..+++...
T Consensus 1 m~~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~r 34 (257)
T PRK09291 1 MSKTILITGAGSGFGREVALRLARKG-HNVIAGVQ 34 (257)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 434789999 9999999999999886 77777654
No 344
>PRK08017 oxidoreductase; Provisional
Probab=65.72 E-value=11 Score=32.17 Aligned_cols=33 Identities=21% Similarity=0.152 Sum_probs=26.7
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|+.++-|.| +|.||+.+++.|.+++ .+++++..
T Consensus 1 m~k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~r 34 (256)
T PRK08017 1 MQKSVLITGCSSGIGLEAALELKRRG-YRVLAACR 34 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 434699999 8999999999998876 67777654
No 345
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=65.70 E-value=9.8 Score=34.68 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=27.0
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+||-|.| +|.||+.+++.|.+++ .+|+++.+
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r 42 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRG-YTVHATLR 42 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 6899999 9999999999999886 78877654
No 346
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=65.35 E-value=7.5 Score=37.19 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=26.3
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
..|.|.| +|++||++.+.|.++. |.+.+.-
T Consensus 80 ~~VlVvGatG~vG~~iv~~llkrg-f~vra~V 110 (411)
T KOG1203|consen 80 TTVLVVGATGKVGRRIVKILLKRG-FSVRALV 110 (411)
T ss_pred CeEEEecCCCchhHHHHHHHHHCC-Ceeeeec
Confidence 6899999 9999999999999998 7766554
No 347
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=65.24 E-value=21 Score=31.89 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=22.8
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvain 37 (250)
+|.|+|.|.+|+.+++++.... .+ ++++.
T Consensus 168 ~VlV~g~g~vg~~~~~la~~~g-~~~v~~~~ 197 (343)
T cd08235 168 TVLVIGAGPIGLLHAMLAKASG-ARKVIVSD 197 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEC
Confidence 6899999999999999777665 66 55553
No 348
>PRK08328 hypothetical protein; Provisional
Probab=65.10 E-value=5.9 Score=34.58 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
-||.|+|.|-+|..++..|....
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~G 50 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAG 50 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC
Confidence 58999999999999999998765
No 349
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=65.01 E-value=40 Score=29.88 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=24.7
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
+|.|.|.|.+|+.+++++.... ++++.+...
T Consensus 165 ~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~~ 195 (330)
T cd08245 165 RVAVLGIGGLGHLAVQYARAMG-FETVAITRS 195 (330)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 6899998889999988888776 777766543
No 350
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=64.89 E-value=11 Score=37.87 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=29.0
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceE-EEeeCCCCChhHH
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVEL-VAVNDPFISTDYM 46 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~v-vaind~~~~~~~~ 46 (250)
+.|||-|.| +|.||+.+.+.|.+++ .++ ++..++ .+++.+
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g-~~v~~~~~~l-~d~~~v 420 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQG-IAYEYGKGRL-EDRSSL 420 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCC-CeEEeecccc-ccHHHH
Confidence 347999999 9999999999998775 666 344443 444433
No 351
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=64.87 E-value=11 Score=34.66 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=25.0
Q ss_pred ceeEEEEc-CChHHHHHHHHHHcCCC------ceEEEee
Q 025639 6 KIKIGING-FGRIGRLVARVALQRDD------VELVAVN 37 (250)
Q Consensus 6 ~~kVaI~G-~G~IGr~~lr~l~~~~~------~~vvain 37 (250)
++||+|.| .|.||..++..|..++- .+++.+.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D 40 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLD 40 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEE
Confidence 37999999 59999999999887542 3666664
No 352
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=64.86 E-value=14 Score=33.20 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=27.8
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCC---ceEEEeeCCCCChhHHh
Q 025639 7 IKIGINGFGRIGRLVARVALQRDD---VELVAVNDPFISTDYMT 47 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~---~~vvaind~~~~~~~~a 47 (250)
+||+++|+|.+|+.+++-|.+++. .+|... ++ +.+...
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~-~~--~~e~~~ 42 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVT-NR--SEEKRA 42 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEe-CC--CHHHHH
Confidence 589999999999999999988762 454444 44 355444
No 353
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=64.45 E-value=63 Score=29.55 Aligned_cols=29 Identities=17% Similarity=0.429 Sum_probs=23.6
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCc-eEEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDV-ELVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~-~vvain 37 (250)
+|.|+|.|.||...++++.... . .++++.
T Consensus 189 ~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~ 218 (368)
T cd08300 189 TVAVFGLGAVGLAVIQGAKAAG-ASRIIGID 218 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 6899999999999999888776 5 566664
No 354
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=64.44 E-value=13 Score=29.49 Aligned_cols=31 Identities=32% Similarity=0.311 Sum_probs=23.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+|+|.|.|.+|+.+++.+.+....++..++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~ 50 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVN 50 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEc
Confidence 5899999999999999999877423444443
No 355
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=64.38 E-value=18 Score=32.49 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=24.4
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+|.|+| .|.+|+.+++++.... .+++++..
T Consensus 154 ~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~ 184 (338)
T cd08295 154 TVFVSAASGAVGQLVGQLAKLKG-CYVVGSAG 184 (338)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEeC
Confidence 689999 7999999999888776 77766543
No 356
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.14 E-value=23 Score=33.64 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=24.5
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
-|+|+|.|..|+.++|.|.++. .++.+ .|.
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G-~~v~~-~D~ 37 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG-IPFAV-MDS 37 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC-CeEEE-EeC
Confidence 5899999999999999999887 66544 454
No 357
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=64.09 E-value=19 Score=32.99 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.4
Q ss_pred eEEEEcC-ChHHHHHHHHHHcCC
Q 025639 8 KIGINGF-GRIGRLVARVALQRD 29 (250)
Q Consensus 8 kVaI~G~-G~IGr~~lr~l~~~~ 29 (250)
||+|.|. |.||..++-.|..++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~ 23 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQP 23 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCC
Confidence 7999996 999999998887765
No 358
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=64.04 E-value=94 Score=28.59 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=23.7
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
+|.|.| .|.+|+.+++++.... ++++++.
T Consensus 196 ~vlV~ga~g~iG~a~~~lak~~G-~~vv~~~ 225 (393)
T cd08246 196 NVLIWGASGGLGSMAIQLARAAG-ANPVAVV 225 (393)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC-CeEEEEe
Confidence 789999 6999999998887765 7776664
No 359
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=64.04 E-value=9.3 Score=34.15 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=23.8
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|||-|.| +|.||+.+.+.|.++. +++++.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~ 30 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--NLIALD 30 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--CEEEec
Confidence 3799999 9999999999998776 455554
No 360
>PRK07326 short chain dehydrogenase; Provisional
Probab=63.98 E-value=14 Score=31.15 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=26.3
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.++-|.| +|.||+.+++.|.++. .+|+.+..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g-~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEG-YKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC-CEEEEeeC
Confidence 4799999 9999999999998875 78777753
No 361
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=63.84 E-value=16 Score=26.49 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
.+++|.|+|.+|+.+++.+.+..
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~ 46 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEG 46 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC
Confidence 58999999999999999988763
No 362
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=63.79 E-value=11 Score=35.54 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=26.8
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.++-|.|+|++|+.+++.|.+++ .+++.|..
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~-~~v~vid~ 262 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEG-YSVKLIER 262 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEEC
Confidence 58999999999999999998875 78877853
No 363
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=63.74 E-value=64 Score=29.20 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=23.9
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCc-eEEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDV-ELVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~-~vvain 37 (250)
+|.|.|.|.+|+.+++++...+ . .++++.
T Consensus 180 ~vlI~g~g~vG~~~~~lak~~G-~~~v~~~~ 209 (361)
T cd08231 180 TVVVQGAGPLGLYAVAAAKLAG-ARRVIVID 209 (361)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 6899999999999999888765 6 776664
No 364
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=63.72 E-value=22 Score=32.54 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=23.6
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCc-eEEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDV-ELVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~-~vvain 37 (250)
+|.|.|.|.+|..+++++.... . .++++.
T Consensus 187 ~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~ 216 (365)
T cd08277 187 TVAVFGLGAVGLSAIMGAKIAG-ASRIIGVD 216 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 7899999999999998887776 6 566664
No 365
>PRK07023 short chain dehydrogenase; Provisional
Probab=63.20 E-value=12 Score=31.93 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=25.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
+++-|.| +|.||+.+++.|.++. .+++.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G-~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG-IAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC-CEEEEEe
Confidence 4899999 9999999999998876 6766664
No 366
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=62.91 E-value=21 Score=32.04 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=25.4
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
+|.|+|.|.+|+.+++.+.... ++++++...
T Consensus 168 ~vlV~g~g~vg~~~~~~a~~~G-~~vi~~~~~ 198 (345)
T cd08260 168 WVAVHGCGGVGLSAVMIASALG-ARVIAVDID 198 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEeCC
Confidence 6899999999999999888775 787777543
No 367
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=62.90 E-value=47 Score=31.71 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=25.2
Q ss_pred eeEEEEcCChHHHH-HHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRL-VARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~-~lr~l~~~~~~~vvaind~ 39 (250)
.||.|+|.|..|.. ++|.|.++. .++.+ .|.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G-~~V~~-~D~ 39 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG-YKVSG-SDL 39 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC-CeEEE-ECC
Confidence 48999999999999 799999887 66544 454
No 368
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=62.53 E-value=12 Score=37.46 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=28.2
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcC-CCceEEEeeC
Q 025639 5 KKIKIGING-FGRIGRLVARVALQR-DDVELVAVND 38 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~-~~~~vvaind 38 (250)
..+||.|.| +|.||+.+++.|.++ +..+|+++..
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 346899999 999999999999876 3588888764
No 369
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=62.47 E-value=14 Score=30.85 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=25.0
Q ss_pred EEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 9 IGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 9 VaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
|-|.| +|.||+.+++.|.++. .+++++...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Ccccccccc
Confidence 57899 9999999999999887 666666654
No 370
>PLN02858 fructose-bisphosphate aldolase
Probab=62.45 E-value=10 Score=41.74 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=29.1
Q ss_pred CCCCceeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 2 AGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 2 ~~~m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+..|..+||++|+|.+|..+++.|.... +++.+.|.
T Consensus 320 ~~~~~~~IGfIGlG~MG~~mA~~L~~~G-~~V~v~dr 355 (1378)
T PLN02858 320 QAKPVKRIGFIGLGAMGFGMASHLLKSN-FSVCGYDV 355 (1378)
T ss_pred cccCCCeEEEECchHHHHHHHHHHHHCC-CEEEEEeC
Confidence 3344578999999999999999998876 88777653
No 371
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=62.44 E-value=28 Score=30.67 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=25.7
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
+|.|+| .|.+|+.+++++.... ..++.+.+.
T Consensus 142 ~vlI~g~~g~ig~~~~~~a~~~G-~~v~~~~~~ 173 (324)
T cd08292 142 WLIQNAAGGAVGKLVAMLAAARG-INVINLVRR 173 (324)
T ss_pred EEEEcccccHHHHHHHHHHHHCC-CeEEEEecC
Confidence 689998 8999999999888876 777777654
No 372
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.43 E-value=17 Score=34.49 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.4
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
||.|+|.|..|+..++.|..+. .++.+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G-~~V~~~D 30 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG-WEVVVSD 30 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CEEEEEC
Confidence 7999999999999999999887 6655443
No 373
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=62.14 E-value=24 Score=31.49 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=24.4
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+|.|+| .|.+|+..++++.... .+++++..
T Consensus 141 ~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~ 171 (325)
T TIGR02825 141 TVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAG 171 (325)
T ss_pred EEEEeCCccHHHHHHHHHHHHcC-CEEEEEeC
Confidence 689999 8999999999888776 67766643
No 374
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=62.10 E-value=14 Score=33.03 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=23.8
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCc-eEEEe
Q 025639 8 KIGINGFGRIGRLVARVALQRDDV-ELVAV 36 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~-~vvai 36 (250)
+|.|+|.|.+|+.+++++.... + .++++
T Consensus 170 ~vlI~g~g~vg~~~~~~a~~~g-~~~v~~~ 198 (344)
T cd08284 170 TVAVIGCGPVGLCAVLSAQVLG-AARVFAV 198 (344)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CceEEEE
Confidence 6899999999999999888776 5 56666
No 375
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=61.94 E-value=9.7 Score=35.73 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=23.6
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|||.+.|.|.+||-++..++.+...+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEE
Confidence 4899999999999665555544448888886
No 376
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=61.87 E-value=98 Score=26.85 Aligned_cols=87 Identities=22% Similarity=0.323 Sum_probs=50.6
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
+|.|.| .|.+|+.+++++.... ..+.++... .+....+.++ | .+ . .....+ +
T Consensus 135 ~vli~g~~~~~g~~~~~~a~~~g-~~v~~~~~~---~~~~~~~~~~----g----~~-----~--~~~~~~--------~ 187 (305)
T cd08270 135 RVLVTGASGGVGRFAVQLAALAG-AHVVAVVGS---PARAEGLREL----G----AA-----E--VVVGGS--------E 187 (305)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC-CEEEEEeCC---HHHHHHHHHc----C----Cc-----E--EEeccc--------c
Confidence 688999 6999999988887765 676666432 3333333211 1 00 0 111110 0
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEe
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis 127 (250)
+...++|++++|+|.. ..+.+..+++.+.+.+.+.
T Consensus 188 -----~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 188 -----LSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSVG 222 (305)
T ss_pred -----ccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEEe
Confidence 1113689999999864 4555667777775443343
No 377
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=61.65 E-value=9 Score=37.20 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=30.2
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhh
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMF 50 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll 50 (250)
+|||+|+|.+|+.+++.|.++. ++|...|.. ++....+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G-~~V~v~drt---~~~~~~l~ 39 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG-FTVSVYNRT---PEKTDEFL 39 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC-CeEEEEeCC---HHHHHHHH
Confidence 4899999999999999999887 888777643 44444443
No 378
>PLN02572 UDP-sulfoquinovose synthase
Probab=61.50 E-value=12 Score=35.78 Aligned_cols=30 Identities=27% Similarity=0.235 Sum_probs=26.7
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
+||-|-| +|.||+.+++.|.+++ .+|+++.
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d 78 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKRG-YEVAIVD 78 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEe
Confidence 5899999 9999999999999886 7888775
No 379
>PRK06153 hypothetical protein; Provisional
Probab=61.48 E-value=5.6 Score=37.79 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=24.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.||+|+|.|-+|-.++..|...+=-+++-|.
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD 207 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFD 207 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEEC
Confidence 5899999999999999999987633444443
No 380
>PRK12827 short chain dehydrogenase; Provisional
Probab=61.47 E-value=16 Score=30.81 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=26.1
Q ss_pred ceeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 6 KIKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 6 ~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+++-|.| .|.||+.+++.|.+++ .+++.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~ 37 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADG-ADVIVLD 37 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEEEc
Confidence 36899999 9999999999999886 6776664
No 381
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=61.46 E-value=22 Score=32.50 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=23.9
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
+|.|+| .|.||+..++++.... .+++++.
T Consensus 161 ~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~ 190 (348)
T PLN03154 161 SVFVSAASGAVGQLVGQLAKLHG-CYVVGSA 190 (348)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEc
Confidence 689999 6999999999888776 7776664
No 382
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=61.33 E-value=5.3 Score=37.56 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=54.0
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccc-cccccCCCcceEEeCCeee-EECC-EEEEEEe
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD-SVHGQWKHNELKVKDEKTL-LFGE-KPVAVFG 83 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~yd-S~~G~~~~~~v~~~~~~~l-~~~g-~~i~v~~ 83 (250)
.||.|+|.|-+|..++..|....-=++.-+.+-..++..+..-+-|+ +..|+.. .. ..-. .| .+|. -.+....
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~K-a~--~~~~-~l~~~np~v~i~~~~ 117 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPK-VE--VAAE-RLKEIQPDIRVNALR 117 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHH-HH--HHHH-HHHHHCCCCeeEEee
Confidence 58999999999999999998765223333433223333333332232 1123321 11 0000 01 1111 1111211
Q ss_pred cC-CCCCCCcccCCccEEEeecCCCCCHHHHH-HHHHCCC
Q 025639 84 FR-NPEEIPWAKTGAEYVVESTGVFTDKDKAA-AHLKGGA 121 (250)
Q Consensus 84 ~~-~p~~i~w~~~~vdiV~~~tg~~~~~~~a~-~~~~~Ga 121 (250)
.+ +++++..--.++|+|++|+..+.++...- ...+.|.
T Consensus 118 ~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~i 157 (370)
T PRK05600 118 ERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGT 157 (370)
T ss_pred eecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 10 12221111137999999999987775433 3445665
No 383
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=60.46 E-value=11 Score=32.95 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=25.4
Q ss_pred eEEEEc-CChHHHHHHHHHHcCC-CceEEEeeC
Q 025639 8 KIGING-FGRIGRLVARVALQRD-DVELVAVND 38 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~-~~~vvaind 38 (250)
||.|.| +|.||+.+++.|.+++ ..++++++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 588999 9999999999988764 478877753
No 384
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=60.42 E-value=12 Score=37.55 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=28.1
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
+||.|-| +|.||+.+++.|.++...+|+++...
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~ 349 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIG 349 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5899999 99999999999987644899888654
No 385
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=60.42 E-value=23 Score=31.42 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=24.9
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
+|.|.| .|.+|+.+++++.... .+++++...
T Consensus 143 ~vlI~g~~g~ig~~~~~lak~~G-~~v~~~~~~ 174 (327)
T PRK10754 143 QFLFHAAAGGVGLIACQWAKALG-AKLIGTVGS 174 (327)
T ss_pred EEEEEeCCcHHHHHHHHHHHHcC-CEEEEEeCC
Confidence 688997 9999999998887776 777777543
No 386
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=60.37 E-value=11 Score=33.65 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=23.8
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|||-|.| ||- ||.+++.|.+.+ .++++...
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g-~~v~~s~~ 31 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG-IEILVTVT 31 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC-CeEEEEEc
Confidence 3788999 998 999999998776 77665543
No 387
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=60.33 E-value=13 Score=35.34 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=26.1
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.+|+|+|+|.+|+.+++.|...+-.+++.++..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRT 213 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 489999999999999999987653456666543
No 388
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.11 E-value=54 Score=29.32 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=22.7
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvain 37 (250)
+|.|.|-|.+|+.+++++...+ .. ++++.
T Consensus 171 ~vlI~g~g~vg~~~~~lak~~G-~~~v~~~~ 200 (345)
T cd08287 171 TVVVVGDGAVGLCAVLAAKRLG-AERIIAMS 200 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 6888899999999988887776 65 55554
No 389
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=59.90 E-value=15 Score=34.16 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=26.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.+|+|+|-|..|+.+.+++.+.+ ++++.+..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG-~~v~~~d~ 33 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLG-YKVIVLDP 33 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CEEEEEeC
Confidence 48999999999999999888876 88777754
No 390
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=59.81 E-value=14 Score=34.68 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=25.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
-||.|+|+|.+|+..++.+.... .++++++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d 197 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG-ATVTILD 197 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC-CeEEEEE
Confidence 47999999999999999998776 6766665
No 391
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=59.53 E-value=4.8 Score=35.57 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.2
Q ss_pred EEEEcC-ChHHHHHHHHHHcCC
Q 025639 9 IGINGF-GRIGRLVARVALQRD 29 (250)
Q Consensus 9 VaI~G~-G~IGr~~lr~l~~~~ 29 (250)
|+|+|. |.+|..++..+...+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCC
Confidence 689997 999999999888665
No 392
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=59.44 E-value=33 Score=30.66 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=26.4
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhh
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYM 49 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~l 49 (250)
+|.|+|.|.+|+.+++++.... .+++.+.+. +.+...++
T Consensus 164 ~VlI~g~g~vg~~~~~la~~~G-~~~v~~~~~--~~~~~~~~ 202 (341)
T cd08262 164 VALVIGCGPIGLAVIAALKARG-VGPIVASDF--SPERRALA 202 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEECC--CHHHHHHH
Confidence 6889999999999988887765 554444332 34444443
No 393
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=59.40 E-value=35 Score=29.96 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=23.1
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
+|.|+| .|.+|+.+++++.... .+++.+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g-~~v~~~~ 178 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLG-YTVVALT 178 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcC-CEEEEEe
Confidence 689999 7999999998887765 6665554
No 394
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=59.09 E-value=13 Score=33.59 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=24.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|||-|-| +|.||+.+++.|.+++.-.++.+.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~ 32 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVD 32 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence 3799999 999999999999987633344443
No 395
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=59.00 E-value=15 Score=33.37 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=24.4
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
+||+|+|.|.+|..++.++..+...+++-+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvD 32 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLD 32 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEe
Confidence 4899999999999999998876523655443
No 396
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=58.95 E-value=92 Score=28.33 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=23.6
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvain 37 (250)
+|.|+|.|.+|+.+++++...+ .. ++.+.
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~ 219 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAFG-ASPIIAVD 219 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CCeEEEEe
Confidence 6889999999999999888776 66 65554
No 397
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=58.51 E-value=15 Score=30.79 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=24.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.+|+|+|||.-|+.-...|.++. ++|+.-...
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG-~~V~Vglr~ 36 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSG-VNVIVGLRE 36 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC--EEEEEE-T
T ss_pred CEEEEECCChHHHHHHHHHHhCC-CCEEEEecC
Confidence 48999999999999999999887 787655444
No 398
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=58.48 E-value=19 Score=30.34 Aligned_cols=33 Identities=21% Similarity=0.161 Sum_probs=27.3
Q ss_pred ceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 6 KIKIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 6 ~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
..+|.|.| +|.+|+.+++.|.++. .+|+.+...
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~r~ 39 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG-AEVIVVDIC 39 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeCC
Confidence 35799999 9999999999999886 687777543
No 399
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=58.41 E-value=30 Score=31.02 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=24.2
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCc-eEEEeeC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDV-ELVAVND 38 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~-~vvaind 38 (250)
+|.|+| .|.+|+..++++.... . +++++..
T Consensus 157 ~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~ 188 (345)
T cd08293 157 TMVVSGAAGACGSLAGQIGRLLG-CSRVVGICG 188 (345)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 789999 6999999999887765 6 6777643
No 400
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=58.32 E-value=14 Score=35.58 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.7
Q ss_pred eEEEEcCChHHHHHHHHHHcCC
Q 025639 8 KIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
||.|+|.|-+|-.+++.|...+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~G 22 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMG 22 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999988665
No 401
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=58.32 E-value=23 Score=24.96 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.6
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
||.|+|.|.+|-.++..+.+.. .++.-|.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~ 29 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLIE 29 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEEe
Confidence 6899999999999999998875 5554444
No 402
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=58.27 E-value=17 Score=32.67 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=33.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccc
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD 53 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~yd 53 (250)
|++|.+|+||.|..+.+-+.++. -++|+-. . +++....+..|.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-hdvV~yD-~--n~~av~~~~~~g 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-HDVVGYD-V--NQTAVEELKDEG 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC-CeEEEEc-C--CHHHHHHHHhcC
Confidence 47999999999999999999886 7877763 3 566666776554
No 403
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=58.17 E-value=8.7 Score=35.82 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.7
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
.||.|+|.|-+|-.++..|....
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~G 51 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAG 51 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC
Confidence 68999999999999999988764
No 404
>PRK07454 short chain dehydrogenase; Provisional
Probab=58.15 E-value=21 Score=30.23 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=25.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.++-|.| +|.||+.+++.|.++. ..|+.+..
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~r 38 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAG-WDLALVAR 38 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeC
Confidence 4789999 9999999999999886 57766654
No 405
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=57.77 E-value=38 Score=31.75 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=23.7
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
+|.|.|.|.||+..++++.... ..++.+.+.
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~ 218 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLLG-AAVVIVGDL 218 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CceEEEeCC
Confidence 6888899999999998887765 665445444
No 406
>PLN00198 anthocyanidin reductase; Provisional
Probab=57.61 E-value=15 Score=33.06 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=25.7
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+|.|-| +|-||+.+++.|.++. .+|+++.
T Consensus 10 ~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~ 40 (338)
T PLN00198 10 KTACVIGGTGFLASLLIKLLLQKG-YAVNTTV 40 (338)
T ss_pred CeEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 6899999 9999999999999886 6776554
No 407
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=57.48 E-value=13 Score=35.62 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=26.9
Q ss_pred CCceeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 4 ~m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
+|..+|||+|+|-||--++-+...+. ++++++.
T Consensus 7 ~~~~~I~ViGLGYVGLPlA~~fA~~G-~~ViG~D 39 (436)
T COG0677 7 NMSATIGVIGLGYVGLPLAAAFASAG-FKVIGVD 39 (436)
T ss_pred CCceEEEEEccccccHHHHHHHHHcC-CceEeEe
Confidence 46689999999999988777666665 8888873
No 408
>PRK12320 hypothetical protein; Provisional
Probab=57.48 E-value=15 Score=37.61 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=26.8
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG-HTVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeC
Confidence 3899999 9999999999998876 78877764
No 409
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=57.45 E-value=44 Score=29.86 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=23.9
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEeeC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAVND 38 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvaind 38 (250)
+|.|+|.|.+|+.+++++...+ .. ++++..
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~ 192 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKILG-AKRVIAVDI 192 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 6899999999999999887765 65 666643
No 410
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=57.28 E-value=17 Score=30.80 Aligned_cols=31 Identities=26% Similarity=0.192 Sum_probs=25.7
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceEEEe
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAV 36 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvai 36 (250)
|+.++.|.| +|-||+.+++.|.++. .+++.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g-~~v~~~ 32 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG-WSVGIN 32 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC-CEEEEE
Confidence 556899999 9999999999999876 676544
No 411
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.23 E-value=19 Score=30.66 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=26.8
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|..++-|.| +|.||+.+++.|.+++ .+++.+..
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g-~~vi~~~r 34 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAG-FDLAINDR 34 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC-CEEEEEec
Confidence 444688889 9999999999999886 67777753
No 412
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=57.20 E-value=17 Score=34.88 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=24.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEe
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvai 36 (250)
-+|+|.|+|.||+.+++.+.... ..++.+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G-a~ViV~ 231 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIVT 231 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 38999999999999999888776 576554
No 413
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=57.13 E-value=50 Score=29.03 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=24.4
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
++.|.| .|.+|+.+++.+.... ..++++.
T Consensus 165 ~vlI~ga~g~vG~~~~~~a~~~g-~~v~~~~ 194 (332)
T cd08259 165 TVLVTGAGGGVGIHAIQLAKALG-ARVIAVT 194 (332)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-CeEEEEe
Confidence 689999 8999999999988776 7776664
No 414
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=57.12 E-value=23 Score=31.32 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=24.6
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+|.|+| .|.+|+.+++++.... ..++++..
T Consensus 148 ~vlI~g~~g~ig~~~~~~a~~~G-~~vi~~~~ 178 (329)
T cd05288 148 TVVVSAAAGAVGSVVGQIAKLLG-ARVVGIAG 178 (329)
T ss_pred EEEEecCcchHHHHHHHHHHHcC-CEEEEEeC
Confidence 688999 8999999999888776 67776653
No 415
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.07 E-value=37 Score=32.20 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=25.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+|.|.|.|.+|...+|.|.++. .++++..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g-~~v~~~d 35 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG-AEVAAYD 35 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 48999999999999999999887 6766553
No 416
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=56.97 E-value=21 Score=28.01 Aligned_cols=103 Identities=19% Similarity=0.217 Sum_probs=52.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhcccc-ccccCCCcceEEeCCeeeE-EC-CEEEEEEe
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDS-VHGQWKHNELKVKDEKTLL-FG-EKPVAVFG 83 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS-~~G~~~~~~v~~~~~~~l~-~~-g~~i~v~~ 83 (250)
.||.|.|.|.+|-.+++.|...+--++.-+.+-..+++.+.+-+-|.+ ..|+.. ... .. . .|. +| +-.+..+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~K-a~~-~~-~-~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNK-AEA-AK-E-RLQEINPDVEVEAIP 78 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBH-HHH-HH-H-HHHHHSTTSEEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHH-HHH-HH-H-HHHHhcCceeeeeee
Confidence 589999999999999999987652234445444355555555332322 224432 110 01 0 111 11 22333332
Q ss_pred cCCC--CCCCccc-CCccEEEeecCCCCCHHHHHH
Q 025639 84 FRNP--EEIPWAK-TGAEYVVESTGVFTDKDKAAA 115 (250)
Q Consensus 84 ~~~p--~~i~w~~-~~vdiV~~~tg~~~~~~~a~~ 115 (250)
. +. +++ +.. .+.|+||+|+.....+.....
T Consensus 79 ~-~~~~~~~-~~~~~~~d~vi~~~d~~~~~~~l~~ 111 (135)
T PF00899_consen 79 E-KIDEENI-EELLKDYDIVIDCVDSLAARLLLNE 111 (135)
T ss_dssp S-HCSHHHH-HHHHHTSSEEEEESSSHHHHHHHHH
T ss_pred c-ccccccc-cccccCCCEEEEecCCHHHHHHHHH
Confidence 2 12 111 111 278999999988655544443
No 417
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.89 E-value=52 Score=31.21 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=49.7
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCC-ceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEec-
Q 025639 7 IKIGINGFGRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF- 84 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~-~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~- 84 (250)
.||.|+|.|..|+..++.|..+.. .++.+ .|....+....+ |.- | ++++..
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~-~D~~~~~~~~~~-----------------------l~~-g--~~~~~g~ 60 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKV-IDTRETPPGQEQ-----------------------LPE-D--VELHSGG 60 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEE-EeCCCCchhHHH-----------------------hhc-C--CEEEeCC
Confidence 479999999999999999887743 66554 454111110000 110 1 112111
Q ss_pred CCCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCC
Q 025639 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (250)
Q Consensus 85 ~~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Ga 121 (250)
.+++.++ +.|+|+-+.|.-.+......+.+.|.
T Consensus 61 ~~~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 93 (438)
T PRK04663 61 WNLEWLL----EADLVVTNPGIALATPEIQQVLAAGI 93 (438)
T ss_pred CChHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 2444443 57899999988766665566666775
No 418
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.83 E-value=15 Score=34.70 Aligned_cols=86 Identities=21% Similarity=0.351 Sum_probs=51.5
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
-||.|+|.|.+|+.+++.|.+++ .++.+..+. ++. +.+ .+ .+ + +. .. .+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G-~~V~g~D~~---~~~---~~~----~~-------------~~--~-~~--~~--~~ 52 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKG-VYVIGVDKS---LEA---LQS----CP-------------YI--H-ER--YL--EN 52 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCC-CEEEEEeCC---ccc---cch----hH-------------HH--h-hh--hc--CC
Confidence 38999999999999999999887 566555432 110 000 00 00 0 00 00 01
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeC
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~ 128 (250)
++.+. .+.|+++-+.|.-......+.+++.|++ +++.
T Consensus 53 ~~~~~---~~~dlvV~s~gi~~~~~~l~~A~~~g~~--vv~~ 89 (418)
T PRK00683 53 AEEFP---EQVDLVVRSPGIKKEHPWVQAAIASHIP--VVTD 89 (418)
T ss_pred cHHHh---cCCCEEEECCCCCCCcHHHHHHHHCCCc--EEEH
Confidence 22221 1578888888877667777888888883 5543
No 419
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=56.82 E-value=49 Score=29.33 Aligned_cols=95 Identities=15% Similarity=0.222 Sum_probs=51.4
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
+|.|+| .|.+|+.+++++......+++++... .+...++.++ |- + -.++.+. .. .+ .
T Consensus 152 ~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~---~~~~~~~~~~----g~----------~--~~~~~~~-~~-~~-~ 209 (336)
T cd08252 152 TLLIIGGAGGVGSIAIQLAKQLTGLTVIATASR---PESIAWVKEL----GA----------D--HVINHHQ-DL-AE-Q 209 (336)
T ss_pred EEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCC---hhhHHHHHhc----CC----------c--EEEeCCc-cH-HH-H
Confidence 689999 89999999998877654677666443 3322233211 10 0 1111110 00 00 0
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEE
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvi 126 (250)
.....+ .++|++++|+|.-...+.+..+++.+.+.+.+
T Consensus 210 i~~~~~--~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~ 247 (336)
T cd08252 210 LEALGI--EPVDYIFCLTDTDQHWDAMAELIAPQGHICLI 247 (336)
T ss_pred HHhhCC--CCCCEEEEccCcHHHHHHHHHHhcCCCEEEEe
Confidence 011122 37999999998644555566677666533333
No 420
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=56.82 E-value=18 Score=30.90 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=25.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|+|-|.| +|.||+.+++.+.+++ .+++.+..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G-~~V~~~~r 32 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATGR 32 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEEEC
Confidence 3689999 9999999999998876 67776654
No 421
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=56.51 E-value=16 Score=37.10 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=25.9
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCC-CceEEEee
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRD-DVELVAVN 37 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~-~~~vvain 37 (250)
|..||+|+|+|.+|+.+++.+.... ..+|++++
T Consensus 2 ~~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d 35 (735)
T PRK14806 2 LFGRVVVIGLGLIGGSFAKALRERGLAREVVAVD 35 (735)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4458999999999999999998765 24666654
No 422
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=56.41 E-value=20 Score=30.04 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=26.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.+|.|.| +|-+|+.+++.+.+++ .+++.+...
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~r~ 38 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADG-AKVVIYDSN 38 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 5799999 9999999999999886 677777643
No 423
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=56.19 E-value=22 Score=28.01 Aligned_cols=30 Identities=33% Similarity=0.331 Sum_probs=24.2
Q ss_pred EEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 9 IGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 9 VaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
|+|+|.|.||..+...|.+.. .++..+...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g-~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG-HDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT-CEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCC-CceEEEEcc
Confidence 689999999999999887754 776667654
No 424
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=56.13 E-value=88 Score=27.84 Aligned_cols=29 Identities=34% Similarity=0.549 Sum_probs=22.8
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCc-eEEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDV-ELVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~-~vvain 37 (250)
+|.|.|.|.+|+.+++++...+ + .++++.
T Consensus 168 ~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~ 197 (339)
T cd08232 168 RVLVTGAGPIGALVVAAARRAG-AAEIVATD 197 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEC
Confidence 6889999999999998887765 5 555553
No 425
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=56.07 E-value=18 Score=32.83 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=23.1
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEe
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvai 36 (250)
|||+|+|.|.+|..+...|.+.. .+|..+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g-~~V~l~ 29 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK-ISVNLW 29 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CeEEEE
Confidence 37999999999999999988765 454434
No 426
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.06 E-value=23 Score=29.77 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=24.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEe
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAV 36 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvai 36 (250)
.++-|.| +|.||+.+++.+.+++ .+++.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g-~~v~~~ 35 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEG-AKVVIA 35 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE
Confidence 4799999 9999999999988776 777666
No 427
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=55.80 E-value=30 Score=31.65 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=22.1
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEe
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAV 36 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvai 36 (250)
+|.|+|.|.+|+.+++++...+ .. ++++
T Consensus 186 ~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~ 214 (365)
T cd05279 186 TCAVFGLGGVGLSVIMGCKAAG-ASRIIAV 214 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 6889999999999998887776 54 4444
No 428
>PRK08163 salicylate hydroxylase; Provisional
Probab=55.58 E-value=19 Score=33.20 Aligned_cols=32 Identities=19% Similarity=0.128 Sum_probs=25.6
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|.++|.|+|-|..|-.++.+|..++ +++..+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g-~~v~v~E 34 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQG-IKVKLLE 34 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCC-CcEEEEe
Confidence 3478999999999999988888765 6665554
No 429
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=55.43 E-value=44 Score=29.79 Aligned_cols=31 Identities=16% Similarity=0.391 Sum_probs=23.9
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+|.|.|.|.+|+.+++++.......++++..
T Consensus 170 ~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~ 200 (340)
T cd05284 170 TVVVIGVGGLGHIAVQILRALTPATVIAVDR 200 (340)
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCcEEEEeC
Confidence 6899997779999998887664367766654
No 430
>PRK09135 pteridine reductase; Provisional
Probab=55.38 E-value=24 Score=29.68 Aligned_cols=31 Identities=23% Similarity=0.175 Sum_probs=26.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.++-|.| +|.||+.+.+.|.+++ .+++.+..
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g-~~v~~~~r 38 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAG-YRVAIHYH 38 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcC
Confidence 5799999 9999999999999876 78777753
No 431
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.00 E-value=25 Score=32.82 Aligned_cols=96 Identities=22% Similarity=0.278 Sum_probs=52.9
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEE--EEEecC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV--AVFGFR 85 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i--~v~~~~ 85 (250)
.+||-|.|.||-.+++-...+.-=.|++|. . +++- |++...+|. -+. +|-+.. ++. |.
T Consensus 195 tvAVfGLG~VGLav~~Gaka~GAsrIIgvD-i--N~~K----f~~ak~fGa-----Te~-------iNp~d~~~~i~-ev 254 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAGASRIIGVD-I--NPDK----FEKAKEFGA-----TEF-------INPKDLKKPIQ-EV 254 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcCcccEEEEe-c--CHHH----HHHHHhcCc-----cee-------cChhhccccHH-HH
Confidence 589999999999998877766656777774 2 3332 222222221 111 111100 111 10
Q ss_pred CCCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCC-EEEE
Q 025639 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK-KVVI 126 (250)
Q Consensus 86 ~p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak-~vvi 126 (250)
..+ -.+.|+||-|||+|.-..+..|-.....|-. .|+|
T Consensus 255 -i~E--mTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 255 -IIE--MTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred -HHH--HhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEE
Confidence 111 1246999999999988777655444444422 3444
No 432
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=54.93 E-value=17 Score=31.90 Aligned_cols=29 Identities=34% Similarity=0.491 Sum_probs=24.5
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
||-|.| +|.||+.+++.|.+++ .+++.+.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEEe
Confidence 578999 9999999999998876 6776664
No 433
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=54.36 E-value=45 Score=30.02 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=24.3
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
+|.|+| .|.+|+.+++++.... +.++.+.
T Consensus 157 ~vlI~ga~g~vg~~~~~~a~~~G-~~v~~~~ 186 (339)
T cd08249 157 PVLIWGGSSSVGTLAIQLAKLAG-YKVITTA 186 (339)
T ss_pred EEEEEcChhHHHHHHHHHHHHcC-CeEEEEE
Confidence 689999 7999999999888776 7777665
No 434
>PRK15076 alpha-galactosidase; Provisional
Probab=54.34 E-value=17 Score=34.90 Aligned_cols=13 Identities=31% Similarity=0.138 Sum_probs=11.6
Q ss_pred eeEEEEcCChHHH
Q 025639 7 IKIGINGFGRIGR 19 (250)
Q Consensus 7 ~kVaI~G~G~IGr 19 (250)
+||+|+|.|.+|-
T Consensus 2 ~KIaIIGaGsvg~ 14 (431)
T PRK15076 2 PKITFIGAGSTVF 14 (431)
T ss_pred cEEEEECCCHHHh
Confidence 6999999999983
No 435
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=54.31 E-value=85 Score=27.82 Aligned_cols=28 Identities=36% Similarity=0.444 Sum_probs=23.3
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEe
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAV 36 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvai 36 (250)
+|.|+|.|.+|+.+++++.... +.++.+
T Consensus 167 ~vlI~g~g~~g~~~~~la~~~G-~~v~~~ 194 (306)
T cd08258 167 TVVVFGPGPIGLLAAQVAKLQG-ATVVVV 194 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CEEEEE
Confidence 5788889999999999888776 777665
No 436
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=54.11 E-value=15 Score=31.89 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=25.1
Q ss_pred EEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 9 IGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 9 VaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
|-|.| +|.||+.+++.|.+++ .+|++++..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~ 31 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILTRS 31 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEeCC
Confidence 35789 9999999999998876 888888754
No 437
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=54.03 E-value=26 Score=31.66 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=22.6
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvain 37 (250)
+|.|+|.|.+|+.+++++.... .+ ++++.
T Consensus 169 ~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~ 198 (351)
T cd08285 169 TVAVFGIGPVGLMAVAGARLRG-AGRIIAVG 198 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 6899999999999998887665 54 55443
No 438
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=54.01 E-value=42 Score=28.27 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=23.7
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+|.|+|.|.+|+.+++++.... .+++++..
T Consensus 137 ~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~ 166 (271)
T cd05188 137 TVLVLGAGGVGLLAAQLAKAAG-ARVIVTDR 166 (271)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEcC
Confidence 7999996669999999887776 77766643
No 439
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=53.58 E-value=21 Score=34.92 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=27.7
Q ss_pred CCCCceeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 2 AGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 2 ~~~m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
+.+|..+|.|+|.|..|-.++..|..+. ++++.+.
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~G-~~v~viE 53 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQG-VPVVLLD 53 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCC-CcEEEEe
Confidence 4456679999999999999988888765 6666664
No 440
>PLN02702 L-idonate 5-dehydrogenase
Probab=53.57 E-value=27 Score=31.79 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=22.0
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEe
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAV 36 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvai 36 (250)
+|.|+|.|.+|+..++++.... .. ++++
T Consensus 184 ~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~ 212 (364)
T PLN02702 184 NVLVMGAGPIGLVTMLAARAFG-APRIVIV 212 (364)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEE
Confidence 6899999999999988888765 54 3444
No 441
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=53.15 E-value=36 Score=30.65 Aligned_cols=90 Identities=11% Similarity=0.084 Sum_probs=48.2
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCc-eEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDV-ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~-~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
+|.|+|.|.+|+.+++++.... . .++.+. . +.+...++-++.. . ..++.+.....+ .
T Consensus 178 ~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~-~--~~~~~~~~~~~g~--------------~--~~~~~~~~~~~~--~ 235 (350)
T cd08240 178 PVVIIGAGGLGLMALALLKALG-PANIIVVD-I--DEAKLEAAKAAGA--------------D--VVVNGSDPDAAK--R 235 (350)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CCeEEEEe-C--CHHHHHHHHHhCC--------------c--EEecCCCccHHH--H
Confidence 6889999999999999888775 5 444443 2 2333333322210 0 111111110000 0
Q ss_pred CCCCCcccCCccEEEeecCCCCCHHHHHHHHHCCC
Q 025639 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Ga 121 (250)
.... +.. ++|++|+|+|.....+.+..+++.+.
T Consensus 236 ~~~~-~~~-~~d~vid~~g~~~~~~~~~~~l~~~g 268 (350)
T cd08240 236 IIKA-AGG-GVDAVIDFVNNSATASLAFDILAKGG 268 (350)
T ss_pred HHHH-hCC-CCcEEEECCCCHHHHHHHHHHhhcCC
Confidence 0000 122 68999999986445566667776665
No 442
>PLN02583 cinnamoyl-CoA reductase
Probab=53.14 E-value=21 Score=31.71 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=26.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.+|.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~R 38 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRG-YTVHAAVQ 38 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEEc
Confidence 4799999 9999999999999886 78877654
No 443
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=52.79 E-value=80 Score=27.90 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=26.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.++.|.|.|.+|+.+++.+.+.. .++..++..
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g-~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD-CNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 37999999999999999998876 576666643
No 444
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=52.49 E-value=34 Score=30.52 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=26.7
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.+|.|-| +|.||+.+++.|.+++ .+|+++.+.
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~ 38 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG-YTVKATVRD 38 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECC
Confidence 4799999 9999999999999886 787766543
No 445
>PRK12829 short chain dehydrogenase; Provisional
Probab=52.47 E-value=20 Score=30.59 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=26.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.++.|.| +|.||+.+++.|.+++ .+|+.+..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~r 43 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAG-ARVHVCDV 43 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 6899999 9999999999999886 67766654
No 446
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=52.36 E-value=66 Score=27.50 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=23.9
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
-||.|+|-|.+|..-++.|.+.+ -.|+.|+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g-a~VtVvs 39 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG-AQLRVIA 39 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC-CEEEEEc
Confidence 47999999999999999988876 4544453
No 447
>PRK08267 short chain dehydrogenase; Provisional
Probab=52.27 E-value=25 Score=30.18 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=24.9
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
++-|.| +|.||+.+++.|.++. ..++.+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G-~~V~~~~ 32 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEG-WRVGAYD 32 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC-CeEEEEe
Confidence 689999 9999999999999876 6776665
No 448
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=52.13 E-value=37 Score=30.07 Aligned_cols=31 Identities=10% Similarity=0.242 Sum_probs=24.9
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
+|.|+| .|.+|+.+++++.... .+++++...
T Consensus 142 ~vlI~ga~g~ig~~~~~~a~~~g-~~v~~~~~~ 173 (329)
T cd08250 142 TVLVTAAAGGTGQFAVQLAKLAG-CHVIGTCSS 173 (329)
T ss_pred EEEEEeCccHHHHHHHHHHHHcC-CeEEEEeCc
Confidence 689999 8999999988887765 777776543
No 449
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.94 E-value=85 Score=29.58 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=24.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEe
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvai 36 (250)
-+|.|.|.|++|+..++.|.+.. ..|+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G-~~V~~~ 34 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG-ANVTVN 34 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CEEEEE
Confidence 37899999999999999999887 665554
No 450
>PRK06185 hypothetical protein; Provisional
Probab=51.89 E-value=23 Score=32.72 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=29.9
Q ss_pred CCCCCceeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 1 ~~~~m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|...|...|.|+|-|.+|-.++..|..+. ++++-+..
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G-~~v~liE~ 37 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAG-VDVTVLEK 37 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCC-CcEEEEec
Confidence 56667789999999999999988888765 77766654
No 451
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=51.86 E-value=59 Score=33.63 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=24.3
Q ss_pred eEEEEcCChHHHHH-HHHHHcCCCceEEEeeCC
Q 025639 8 KIGINGFGRIGRLV-ARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G~G~IGr~~-lr~l~~~~~~~vvaind~ 39 (250)
+|.|+|.|..|... ++.|.++. .+|. +.|.
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G-~~V~-~sD~ 36 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRG-YSVS-GSDL 36 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCC-CeEE-EECC
Confidence 59999999999997 89998887 6654 4554
No 452
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=51.44 E-value=1.1e+02 Score=28.40 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=23.1
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
+|.|+| .|.+|+.+++++.... ..++.+.
T Consensus 192 ~vlV~Ga~g~vG~~ai~~ak~~G-~~vi~~~ 221 (398)
T TIGR01751 192 NVLIWGAAGGLGSYATQLARAGG-GNPVAVV 221 (398)
T ss_pred EEEEEcCCcHHHHHHHHHHHHcC-CeEEEEc
Confidence 689999 6999999998887765 6665553
No 453
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=51.34 E-value=26 Score=28.65 Aligned_cols=31 Identities=39% Similarity=0.458 Sum_probs=26.2
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
++.|.|.|.-|+.+++.|.++. +++++.-|.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g-~~vvgfid~ 31 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSG-WEIVGFLDD 31 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 4789999999999999998664 898887664
No 454
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=51.31 E-value=29 Score=30.95 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=26.6
Q ss_pred CCCCCceeEEEEc-CChHHHHHHHHHHcCCCceEEEe
Q 025639 1 MAGDKKIKIGING-FGRIGRLVARVALQRDDVELVAV 36 (250)
Q Consensus 1 ~~~~m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvai 36 (250)
|+... .+|-|.| +|.||+.+++.|.+++ .+++++
T Consensus 1 ~~~~~-k~vlVtG~~G~IG~~l~~~L~~~G-~~V~~~ 35 (325)
T PLN02989 1 MADGG-KVVCVTGASGYIASWIVKLLLFRG-YTINAT 35 (325)
T ss_pred CCCCC-CEEEEECCchHHHHHHHHHHHHCC-CEEEEE
Confidence 44443 5899999 9999999999999876 676554
No 455
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=51.10 E-value=20 Score=32.74 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=23.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|||.|.|.|.||-.+.-.|.+.+ -.+..+.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~ 30 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLV 30 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEe
Confidence 48999999999999988888776 3433343
No 456
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=51.04 E-value=41 Score=27.98 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=25.5
Q ss_pred eeEEEEcCCh-HHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGINGFGR-IGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G~G~-IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.||.|+|.|. +|+.+++.|.++. ..+..++..
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~r~ 77 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN-ATVTVCHSK 77 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC-CEEEEEECC
Confidence 5899999997 5998999998876 566666654
No 457
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=51.02 E-value=25 Score=31.80 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=26.6
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
+|-|-| +|.||+.+++.|.+++ .+|+++...
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~ 33 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG-YEVHGLIRR 33 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC-CEEEEEecC
Confidence 688999 9999999999999886 788887543
No 458
>PRK12828 short chain dehydrogenase; Provisional
Probab=50.71 E-value=31 Score=28.73 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=26.0
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.++-|.| +|.||+.+++.+.++. ..++.+..
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G-~~v~~~~r 39 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARG-ARVALIGR 39 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCC-CeEEEEeC
Confidence 4799999 9999999999998876 67777754
No 459
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=50.69 E-value=20 Score=33.87 Aligned_cols=24 Identities=29% Similarity=0.648 Sum_probs=21.9
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
..+|||+|||-.||.+++-+..++
T Consensus 52 tl~IaIIGfGnmGqflAetli~aG 75 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAG 75 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcC
Confidence 379999999999999999998887
No 460
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=50.63 E-value=22 Score=31.46 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=24.0
Q ss_pred EEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 9 IGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 9 VaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
|-|.| +|.||+.+++.|.+++ .+++++-+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecC
Confidence 57899 9999999999999886 665665443
No 461
>PRK08177 short chain dehydrogenase; Provisional
Probab=50.23 E-value=29 Score=29.15 Aligned_cols=31 Identities=19% Similarity=0.097 Sum_probs=26.2
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
++-|.| +|.+|+.+++.|.+++ ..|+.+...
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G-~~V~~~~r~ 34 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERG-WQVTATVRG 34 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCC-CEEEEEeCC
Confidence 688999 9999999999999886 677777643
No 462
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=50.07 E-value=28 Score=29.08 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=45.2
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~ 86 (250)
.++.|.|||.+||-+++.|.... .. |.|.|. ||- .++|= +.++ +.+ .++ +
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~G-a~-V~V~e~--DPi---~alqA-------------~~dG--f~v----~~~-~--- 73 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLG-AR-VTVTEI--DPI---RALQA-------------AMDG--FEV----MTL-E--- 73 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT--E-EEEE-S--SHH---HHHHH-------------HHTT---EE----E-H-H---
T ss_pred CEEEEeCCCcccHHHHHHHhhCC-CE-EEEEEC--ChH---HHHHh-------------hhcC--cEe----cCH-H---
Confidence 37999999999999999998775 33 234454 442 12210 0112 211 011 1
Q ss_pred CCCCCcccCCccEEEeecCCC--CCHHHHHHHHHCCCCEEEEeCCCCC
Q 025639 87 PEEIPWAKTGAEYVVESTGVF--TDKDKAAAHLKGGAKKVVISAPSKD 132 (250)
Q Consensus 87 p~~i~w~~~~vdiV~~~tg~~--~~~~~a~~~~~~Gak~vvis~~s~d 132 (250)
+.++ ..|++|-+||.- .+.+.. ..++.|| ++.+..+.|
T Consensus 74 -~a~~----~adi~vtaTG~~~vi~~e~~-~~mkdga--il~n~Gh~d 113 (162)
T PF00670_consen 74 -EALR----DADIFVTATGNKDVITGEHF-RQMKDGA--ILANAGHFD 113 (162)
T ss_dssp -HHTT----T-SEEEE-SSSSSSB-HHHH-HHS-TTE--EEEESSSST
T ss_pred -HHHh----hCCEEEECCCCccccCHHHH-HHhcCCe--EEeccCcCc
Confidence 1122 579999999864 355554 3567887 666666654
No 463
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=50.06 E-value=91 Score=29.13 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=22.0
Q ss_pred eEEEEc-CChHHHHHHHHHHcCC--CceEEEee
Q 025639 8 KIGING-FGRIGRLVARVALQRD--DVELVAVN 37 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~--~~~vvain 37 (250)
+|.|+| .|.+|...++++.... --.++++.
T Consensus 178 ~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~ 210 (410)
T cd08238 178 NTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTD 210 (410)
T ss_pred EEEEEeCCCHHHHHHHHHHHhcccCCceEEEEc
Confidence 689998 8999999988776543 12565553
No 464
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.03 E-value=33 Score=28.90 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=28.7
Q ss_pred CCCCCc-eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 1 MAGDKK-IKIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 1 ~~~~m~-~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
|..+|. .++-|.| .|.+|+.+++.|.++. .+|+.+...
T Consensus 1 ~~~~~~~~~vlVtG~sg~iG~~l~~~L~~~G-~~Vi~~~r~ 40 (239)
T PRK07666 1 MAQSLQGKNALITGAGRGIGRAVAIALAKEG-VNVGLLART 40 (239)
T ss_pred CCccCCCCEEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCC
Confidence 334442 4689999 9999999999998876 687777543
No 465
>PRK07102 short chain dehydrogenase; Provisional
Probab=49.78 E-value=29 Score=29.39 Aligned_cols=31 Identities=29% Similarity=0.186 Sum_probs=25.6
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.++-|.| +|.||+.+++.+.++. ..|+.+..
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G-~~Vi~~~r 33 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAG-ARLYLAAR 33 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcC-CEEEEEeC
Confidence 3789999 9999999999999876 67666643
No 466
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.45 E-value=35 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=26.7
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.++-|.| +|.||+.+++.|.++. .+++.+...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G-~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG-ARVVVTDRN 38 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCC
Confidence 4799999 9999999999999886 677777543
No 467
>PRK06924 short chain dehydrogenase; Provisional
Probab=49.41 E-value=30 Score=29.41 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=25.5
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
++-|.| +|-||+.+++.|.+++ .+|+.+..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g-~~V~~~~r 33 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKG-THVISISR 33 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcC-CEEEEEeC
Confidence 789999 9999999999999886 67776654
No 468
>PRK07024 short chain dehydrogenase; Provisional
Probab=49.32 E-value=30 Score=29.70 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=26.0
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|+.+|-|.| +|-||+.+++.|.++. ..++.+.
T Consensus 1 ~~~~vlItGas~gIG~~la~~l~~~G-~~v~~~~ 33 (257)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQG-ATLGLVA 33 (257)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 445889999 9999999999999876 5766654
No 469
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=49.25 E-value=24 Score=32.51 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=21.1
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
+||+|+|.|.+|..+...|.+..
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g 30 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG 30 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC
Confidence 69999999999999999988775
No 470
>PRK05586 biotin carboxylase; Validated
Probab=48.86 E-value=24 Score=33.62 Aligned_cols=32 Identities=31% Similarity=0.240 Sum_probs=27.7
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|..||+|.|-|.+|+.+++++.+.+ ++++++.
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG-~~~v~v~ 32 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMG-IETVAVY 32 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcC-CcEEEEc
Confidence 3459999999999999999999887 8888883
No 471
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=48.63 E-value=23 Score=27.37 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=29.1
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
|.-||-|.|-|.|+.+++|.+.+.. ++.|+|+..
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~G-i~tv~v~s~ 34 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELG-IETVAVNSN 34 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTT-SEEEEEEEG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhC-CcceeccCc
Confidence 4458999999999999999999997 999999864
No 472
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=48.61 E-value=19 Score=32.65 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=31.1
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeCCC---CChhHHhhhh
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDPF---ISTDYMTYMF 50 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind~~---~~~~~~a~ll 50 (250)
|||.|.| .|.+|+.+.+.|. +.+++++..... .+++.+..++
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~Ditd~~~v~~~i 46 (281)
T COG1091 1 MKILITGANGQLGTELRRALP--GEFEVIATDRAELDITDPDAVLEVI 46 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC--CCceEEeccCccccccChHHHHHHH
Confidence 3599999 9999999999887 558888875321 5566666665
No 473
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=48.50 E-value=46 Score=30.54 Aligned_cols=34 Identities=26% Similarity=0.176 Sum_probs=27.4
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCceEEEeeCC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~ 39 (250)
.-++||.|+|..|+..++++.....++-+.|-+.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r 161 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR 161 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC
Confidence 4689999999999988888776545777777765
No 474
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=48.32 E-value=47 Score=29.74 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=23.2
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
+|.|+|.|.+|+.+++++...+...++++.
T Consensus 169 ~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~ 198 (345)
T cd08286 169 TVAIVGAGPVGLAALLTAQLYSPSKIIMVD 198 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 688899999999998887776645666653
No 475
>KOG2742 consensus Predicted oxidoreductase [General function prediction only]
Probab=48.05 E-value=8.1 Score=36.10 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=54.2
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~p 87 (250)
-|||.|||..-|.++=.|.+-+ |++.|+-.. .+ .++...+ + ...++ .. .+..
T Consensus 4 gv~v~GTg~~arv~iP~l~e~~-f~v~A~w~R---t~------~ea~a~a---------a---~~~v~-----~~-t~~~ 55 (367)
T KOG2742|consen 4 GVGVFGTGIFARVLIPLLKEEG-FEVKAIWGR---TK------TEAKAKA---------A---EMNVR-----KY-TSRL 55 (367)
T ss_pred ceeEeccChhHhhhhhhhhhcc-chHhhhhch---hh------hHHHHhh---------h---ccchh-----hc-cccc
Confidence 4999999999998877777777 885554322 11 1111100 0 11111 00 1111
Q ss_pred CCCCcccCCccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCC
Q 025639 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (250)
Q Consensus 88 ~~i~w~~~~vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s 130 (250)
++ .|.+.++|+|+-+......++-..+.+..| |.|+...|.
T Consensus 56 de-iLl~~~vdlv~i~lpp~~~~eI~~kal~~G-k~Vvcek~a 96 (367)
T KOG2742|consen 56 DE-ILLDQDVDLVCISLPPPLHAEIVVKALGIG-KHVVCEKPA 96 (367)
T ss_pred hh-hhccCCcceeEeccCCccceeeeeccccCC-ceEEeccCC
Confidence 22 256678998888888888887777777777 456665554
No 476
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.58 E-value=39 Score=28.22 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=24.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+|-|.| +|-||+.+++.|.++. .+++.+.
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g-~~v~~~~ 37 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAG-ADVVVHY 37 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CeEEEEe
Confidence 4899999 9999999999998876 5654443
No 477
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=47.58 E-value=32 Score=31.19 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=26.2
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
+||-|.| +|-||+.+++.|.++. .+|+++.
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~ 35 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELG-AEVYGYS 35 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCC-CEEEEEe
Confidence 5899999 9999999999999876 7777765
No 478
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.42 E-value=36 Score=31.79 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=20.9
Q ss_pred CccEEEeecCCCCCHHHHHHHHHCC
Q 025639 96 GAEYVVESTGVFTDKDKAAAHLKGG 120 (250)
Q Consensus 96 ~vdiV~~~tg~~~~~~~a~~~~~~G 120 (250)
..|++|||||...+.+.+-..++.|
T Consensus 242 ~~d~~~dCsG~~~~~~aai~a~r~g 266 (354)
T KOG0024|consen 242 QPDVTFDCSGAEVTIRAAIKATRSG 266 (354)
T ss_pred CCCeEEEccCchHHHHHHHHHhccC
Confidence 4899999999999998877677644
No 479
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.15 E-value=26 Score=33.17 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=23.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEe
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvai 36 (250)
|||.|.|+|..|+.+++.|. +. .++++.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G-~~V~~~ 28 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KF-GGVDIF 28 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CC-CeEEEE
Confidence 47999999999999999999 76 665444
No 480
>PRK07236 hypothetical protein; Provisional
Probab=46.89 E-value=36 Score=31.40 Aligned_cols=32 Identities=9% Similarity=-0.037 Sum_probs=26.3
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+++|.|+|-|..|-.++.+|.++. ++++.+..
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G-~~v~v~E~ 37 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAG-WDVDVFER 37 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC-CCEEEEec
Confidence 579999999999999999888775 66666653
No 481
>PRK05993 short chain dehydrogenase; Provisional
Probab=46.62 E-value=34 Score=29.86 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=26.6
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|..+|-|.| .|-||+.+++.|.+++ .+|+.+..
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G-~~Vi~~~r 36 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDG-WRVFATCR 36 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 334789999 9999999999998876 78777653
No 482
>PRK08223 hypothetical protein; Validated
Probab=46.44 E-value=30 Score=31.57 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.3
Q ss_pred eeEEEEcCChHHHHHHHHHHcCC
Q 025639 7 IKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
-||.|+|.|-+|-.++..|....
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aG 50 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLG 50 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhC
Confidence 58999999999999999888664
No 483
>PRK05884 short chain dehydrogenase; Provisional
Probab=46.34 E-value=32 Score=29.13 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=24.4
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|+-|.| .|.||+.+++.+.++. ..++.+.
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g-~~v~~~~ 31 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDG-HKVTLVG 31 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 789999 9999999999998876 6766664
No 484
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=46.31 E-value=72 Score=28.45 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=24.7
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+|.|+|.|.+|+.+++++.... ++++++..
T Consensus 162 ~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~ 191 (337)
T cd08261 162 TVLVVGAGPIGLGVIQVAKARG-ARVIVVDI 191 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEECC
Confidence 6889999999999999888776 77776643
No 485
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=46.25 E-value=35 Score=28.36 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=25.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.++.|.| +|.+|+.+++.|.++. .+++.++.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R 60 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGR 60 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcC
Confidence 5899999 8999999999998776 57666653
No 486
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=46.19 E-value=36 Score=28.57 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=25.9
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|+-++.|.| .|.||+.+++.|.+++ ..++.+.
T Consensus 1 ~~k~vlItG~s~~iG~~la~~l~~~g-~~vi~~~ 33 (245)
T PRK12824 1 MKKIALVTGAKRGIGSAIARELLNDG-YRVIATY 33 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEe
Confidence 434788989 9999999999998876 6776664
No 487
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=46.09 E-value=29 Score=31.61 Aligned_cols=127 Identities=18% Similarity=0.213 Sum_probs=67.1
Q ss_pred eeEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhH-Hhhhhcccccccc-CCCcce-EE-eCCeeeE----ECCEE
Q 025639 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDY-MTYMFKYDSVHGQ-WKHNEL-KV-KDEKTLL----FGEKP 78 (250)
Q Consensus 7 ~kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~-~a~ll~ydS~~G~-~~~~~v-~~-~~~~~l~----~~g~~ 78 (250)
+|||.+|+|..|.-+.+-|.+.. +++..-|.. ++- ...+.++ |- .. .+. +. ++- .++ .|+..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~v~~r~---~~ka~~~~~~~----Ga~~a-~s~~eaa~~a-DvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG-HEVTVYNRT---PEKAAELLAAA----GATVA-ASPAEAAAEA-DVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC-CEEEEEeCC---hhhhhHHHHHc----CCccc-CCHHHHHHhC-CEEEEecCCHHH
Confidence 48999999999999999999887 888777754 322 2222221 11 11 110 11 111 121 12211
Q ss_pred EE-EEecCCCCCCCcccCCccEEEeec--CCCCCHHHHHHHHHCCCCEEEEeCCCC--------CCCeEEeecCccccCC
Q 025639 79 VA-VFGFRNPEEIPWAKTGAEYVVEST--GVFTDKDKAAAHLKGGAKKVVISAPSK--------DAPMFVVGVNEKEYKP 147 (250)
Q Consensus 79 i~-v~~~~~p~~i~w~~~~vdiV~~~t--g~~~~~~~a~~~~~~Gak~vvis~~s~--------d~p~iV~gVN~~~~~~ 147 (250)
++ |... +-.-+.+-. .=.+++||+ ....+++.++.+.+.|. -.+++|-. ...+|+.|=-.+.++.
T Consensus 71 V~~V~~g-~~g~~~~~~-~G~i~IDmSTisp~~a~~~a~~~~~~G~--~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r 146 (286)
T COG2084 71 VRAVLFG-ENGLLEGLK-PGAIVIDMSTISPETARELAAALAAKGL--EFLDAPVSGGVPGAAAGTLTIMVGGDAEAFER 146 (286)
T ss_pred HHHHHhC-ccchhhcCC-CCCEEEECCCCCHHHHHHHHHHHHhcCC--cEEecCccCCchhhhhCceEEEeCCCHHHHHH
Confidence 00 0000 000111111 235888888 44445566666667787 56788732 3667777777766653
No 488
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=45.87 E-value=23 Score=32.18 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=17.0
Q ss_pred EEcCChHHHHHHHHHHcCCC
Q 025639 11 INGFGRIGRLVARVALQRDD 30 (250)
Q Consensus 11 I~G~G~IGr~~lr~l~~~~~ 30 (250)
|+|.|.||..++..|..++-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l 20 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGI 20 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCC
Confidence 67999999999998887763
No 489
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=45.85 E-value=7.3 Score=29.80 Aligned_cols=91 Identities=15% Similarity=0.281 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCCCCCCCcccCC
Q 025639 17 IGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTG 96 (250)
Q Consensus 17 IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~p~~i~w~~~~ 96 (250)
||...++++.... .+++++.. +.+-+.++.++.- . ..+...+. .+ . +...++. ...+
T Consensus 2 vG~~a~q~ak~~G-~~vi~~~~---~~~k~~~~~~~Ga-----~-~~~~~~~~-~~----------~-~~i~~~~-~~~~ 58 (130)
T PF00107_consen 2 VGLMAIQLAKAMG-AKVIATDR---SEEKLELAKELGA-----D-HVIDYSDD-DF----------V-EQIRELT-GGRG 58 (130)
T ss_dssp HHHHHHHHHHHTT-SEEEEEES---SHHHHHHHHHTTE-----S-EEEETTTS-SH----------H-HHHHHHT-TTSS
T ss_pred hHHHHHHHHHHcC-CEEEEEEC---CHHHHHHHHhhcc-----c-cccccccc-cc----------c-ccccccc-cccc
Confidence 7888888888777 88877764 3544444443221 0 01111111 00 0 0011111 1137
Q ss_pred ccEEEeecCCCCCHHHHHHHHHCCCCEEEEeCCC
Q 025639 97 AEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (250)
Q Consensus 97 vdiV~~~tg~~~~~~~a~~~~~~Gak~vvis~~s 130 (250)
+|+||||+|.....+.+-..++.|.+-+++..+.
T Consensus 59 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 59 VDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp EEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 9999999996666666667777776555554444
No 490
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=45.60 E-value=32 Score=27.80 Aligned_cols=100 Identities=17% Similarity=0.163 Sum_probs=53.8
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCceEEEeeCCCCChhHHhhhhccccccccCCCcceEEeCCeeeEECCEEEEEEecCCC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~vvaind~~~~~~~~a~ll~ydS~~G~~~~~~v~~~~~~~l~~~g~~i~v~~~~~p 87 (250)
||+|.|.|..|..++..|.++. .+|.-.. .+.+.+..+-+.....-.++ +- .+.. .+.+. .|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~---~~~~~~~~i~~~~~n~~~~~-------~~-~l~~---~i~~t--~dl 63 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWG---RDEEQIEEINETRQNPKYLP-------GI-KLPE---NIKAT--TDL 63 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEET---SCHHHHHHHHHHTSETTTST-------TS-BEET---TEEEE--SSH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEe---ccHHHHHHHHHhCCCCCCCC-------Cc-ccCc---ccccc--cCH
Confidence 7999999999999999999887 5544343 24555554442211000011 11 1211 23343 344
Q ss_pred CCCCcccCCccEEEeecCCCCCHHHHHHH---HHCCCCEEEEeCC
Q 025639 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAH---LKGGAKKVVISAP 129 (250)
Q Consensus 88 ~~i~w~~~~vdiV~~~tg~~~~~~~a~~~---~~~Gak~vvis~~ 129 (250)
++.- .+.|+++-+++.+.-++.++.. ++.+. .+|+.+
T Consensus 64 ~~a~---~~ad~IiiavPs~~~~~~~~~l~~~l~~~~--~ii~~~ 103 (157)
T PF01210_consen 64 EEAL---EDADIIIIAVPSQAHREVLEQLAPYLKKGQ--IIISAT 103 (157)
T ss_dssp HHHH---TT-SEEEE-S-GGGHHHHHHHHTTTSHTT---EEEETS
T ss_pred HHHh---CcccEEEecccHHHHHHHHHHHhhccCCCC--EEEEec
Confidence 3221 2789999999988777665543 33444 556554
No 491
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=45.59 E-value=32 Score=32.83 Aligned_cols=32 Identities=28% Similarity=0.227 Sum_probs=28.4
Q ss_pred CceeEEEEcCChHHHHHHHHHHcCCCceEEEee
Q 025639 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 5 m~~kVaI~G~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|+-||.|.|-|.++..+++++.+.+ ++++++.
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG-~~vv~~~ 32 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELG-IKTVAVH 32 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcC-CeEEEEE
Confidence 4459999999999999999999887 9998885
No 492
>PRK07074 short chain dehydrogenase; Provisional
Probab=45.46 E-value=37 Score=28.99 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=25.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.++-|.| +|.||+.+++.|.++. .+++.+..
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g-~~v~~~~r 34 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAG-DRVLALDI 34 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCC-CEEEEEeC
Confidence 3688999 9999999999998876 67766653
No 493
>PRK05693 short chain dehydrogenase; Provisional
Probab=45.14 E-value=38 Score=29.39 Aligned_cols=29 Identities=28% Similarity=0.249 Sum_probs=24.8
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
++-|.| +|-||+.+++.+.+++ .+|+++.
T Consensus 3 ~vlItGasggiG~~la~~l~~~G-~~V~~~~ 32 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAG-YEVWATA 32 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 688999 9999999999998876 7777664
No 494
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=45.07 E-value=43 Score=28.47 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=25.7
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
.++-|.| +|-||+.+++.|.+++ .+++.+..
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G-~~v~~~~r 39 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAG-AAVAIADL 39 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CeEEEEeC
Confidence 5699999 9999999999999886 57766643
No 495
>PRK08628 short chain dehydrogenase; Provisional
Probab=44.80 E-value=40 Score=28.76 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=27.3
Q ss_pred CCCCCc-eeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 1 MAGDKK-IKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 1 ~~~~m~-~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
|..+|+ -++-|.| +|.||+.+++.|.++. ..++.+.
T Consensus 1 ~~~~l~~~~ilItGasggiG~~la~~l~~~G-~~v~~~~ 38 (258)
T PRK08628 1 MDLNLKDKVVIVTGGASGIGAAISLRLAEEG-AIPVIFG 38 (258)
T ss_pred CCCCcCCCEEEEeCCCChHHHHHHHHHHHcC-CcEEEEc
Confidence 445553 5788999 9999999999999887 5555543
No 496
>PRK06482 short chain dehydrogenase; Provisional
Probab=44.73 E-value=37 Score=29.41 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=26.1
Q ss_pred CceeEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 5 m~~kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
|..++-|.| +|-||+.+++.|.++. ..++.+..
T Consensus 1 m~k~vlVtGasg~IG~~la~~L~~~g-~~v~~~~r 34 (276)
T PRK06482 1 MSKTWFITGASSGFGRGMTERLLARG-DRVAATVR 34 (276)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 445789999 9999999999998876 56666543
No 497
>PLN02650 dihydroflavonol-4-reductase
Probab=44.61 E-value=38 Score=30.72 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=25.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHcCCCceEEEee
Q 025639 7 IKIGING-FGRIGRLVARVALQRDDVELVAVN 37 (250)
Q Consensus 7 ~kVaI~G-~G~IGr~~lr~l~~~~~~~vvain 37 (250)
.+|-|-| +|.||+.+++.|.+++ .+|+++.
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~G-~~V~~~~ 36 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLERG-YTVRATV 36 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHCC-CEEEEEE
Confidence 5899999 9999999999999886 7777654
No 498
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=44.25 E-value=13 Score=35.15 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=21.0
Q ss_pred ceeEEEEcCChHHHHHHHHHHcCC
Q 025639 6 KIKIGINGFGRIGRLVARVALQRD 29 (250)
Q Consensus 6 ~~kVaI~G~G~IGr~~lr~l~~~~ 29 (250)
..||.|+|.|-+|-.++..|....
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~G 65 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAG 65 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcC
Confidence 368999999999999999988664
No 499
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=44.18 E-value=66 Score=27.64 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=24.5
Q ss_pred eEEEEc-CChHHHHHHHHHHcCCCceEEEeeC
Q 025639 8 KIGING-FGRIGRLVARVALQRDDVELVAVND 38 (250)
Q Consensus 8 kVaI~G-~G~IGr~~lr~l~~~~~~~vvaind 38 (250)
+|.|+| .|.+|+.+++++.... .+++++..
T Consensus 139 ~vlI~g~~g~~g~~~~~~a~~~g-~~v~~~~~ 169 (320)
T cd05286 139 TVLVHAAAGGVGLLLTQWAKALG-ATVIGTVS 169 (320)
T ss_pred EEEEEcCCchHHHHHHHHHHHcC-CEEEEEcC
Confidence 689999 8999999998887765 77777653
No 500
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=43.67 E-value=62 Score=29.43 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=23.8
Q ss_pred eEEEEcCChHHHHHHHHHHcCCCce-EEEeeC
Q 025639 8 KIGINGFGRIGRLVARVALQRDDVE-LVAVND 38 (250)
Q Consensus 8 kVaI~G~G~IGr~~lr~l~~~~~~~-vvaind 38 (250)
+|.|+|.|.+|+.+++++...+ .. ++++..
T Consensus 185 ~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~ 215 (363)
T cd08279 185 TVAVIGCGGVGLNAIQGARIAG-ASRIIAVDP 215 (363)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCcEEEEcC
Confidence 6889999999999999888766 65 666643
Done!