RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025639
(250 letters)
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 452 bits (1164), Expect = e-162
Identities = 192/228 (84%), Positives = 210/228 (92%), Gaps = 5/228 (2%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
M KIKIGINGFGRIGRLVARVALQ +DVELVAVNDPFI+TDYMTYMFKYD+VHGQWK
Sbjct: 1 MG---KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWK 57
Query: 61 HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
H+++K+KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFTDK+KAAAHLKGG
Sbjct: 58 HSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGG 117
Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
AKKVVISAPSKDAPMFV GVNE +Y ++DIVSNASCTTNCLAPLAKVIHD FGI+EGLM
Sbjct: 118 AKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLM 177
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TTVH+ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAK +VG+V+
Sbjct: 178 TTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAK--AVGKVL 223
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding
rossmann-fold domain, alpha and beta protein,
oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 440 bits (1134), Expect = e-158
Identities = 138/222 (62%), Positives = 172/222 (77%), Gaps = 4/222 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+++ INGFGRIGRLV R+AL R +VE+VA+NDPFI+ DY YMFKYDS HG++ E+
Sbjct: 2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAG-EVSH 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
D+ ++ K +A + R+P +PW + + ++STGVF + D A H+ GAKKVVI
Sbjct: 61 DDKH-IIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119
Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
+APS APMFV+GVNE++Y +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 120 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 179
Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAK +VG+V+
Sbjct: 180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAK--AVGKVL 219
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase,
structural genomics, structural genomics CON SGC,
glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB:
3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 432 bits (1114), Expect = e-154
Identities = 135/229 (58%), Positives = 176/229 (76%), Gaps = 6/229 (2%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
++ +++ +GINGFGRIGRLV R +++ V++VAVNDPFI +YM YMFKYDS HG++K
Sbjct: 2 VSVARELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYK 60
Query: 61 HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
++ ++ + L+ ++V+ + P++IPW G+ YVVESTGV+ A+ H+ G
Sbjct: 61 G-SVEFRNGQ-LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAG 118
Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
A++VVISAPS DAPMFV+GVNE +Y P ++IVSNASCTTNCLAPLAKVIH++FGIVEGL
Sbjct: 119 AQRVVISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGL 178
Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
MTTVHS TATQKTVDGPS K WR GR A NIIP+STGAAK +V +VI
Sbjct: 179 MTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAK--AVTKVI 225
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 430 bits (1109), Expect = e-154
Identities = 146/228 (64%), Positives = 176/228 (77%), Gaps = 7/228 (3%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
M K+K+G+NGFGRIGRLV R A V++VA+NDPFI +YM YMF+YDS HG++
Sbjct: 1 MG---KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFH 57
Query: 61 HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
+K ++ K L+ P+ +F R+P +I W GAEYVVESTGVFT +KA AHL+GG
Sbjct: 58 G-TVKAENGK-LVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGG 115
Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
AK+V+ISAPS DAPMFV+GVN ++Y L I+SNASCTTNCLAPLAKVIHD FGIVEGLM
Sbjct: 116 AKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLM 175
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TTVH+ITATQKTVDGPS K WR GR A NIIP+STGAAK +VG+VI
Sbjct: 176 TTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAK--AVGKVI 221
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 430 bits (1107), Expect = e-153
Identities = 136/226 (60%), Positives = 170/226 (75%), Gaps = 7/226 (3%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
K+GINGFGRIGRLV R A R D+E+VA+NDPF+ +++ Y+ KYDSVHGQ+ E+
Sbjct: 11 ATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPC-EVT 69
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
D LL GEK V+VF ++P +IPW K + V ESTGVF K+ A++HLKGGAKKV+
Sbjct: 70 HADGF-LLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVI 128
Query: 126 ISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
+SAP KD P++V+G+N +Y + IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH
Sbjct: 129 MSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVH 188
Query: 185 SITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
+ TA Q VDGPS KDWR GR A NIIP+STGAAK +VG+V+
Sbjct: 189 ASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAK--AVGKVL 232
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 430 bits (1107), Expect = e-153
Identities = 139/227 (61%), Positives = 174/227 (76%), Gaps = 8/227 (3%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
+ +GINGFGRIGRLV R ++R+D+ +VA+NDPF+ +YM Y+ KYDSVHG + ++
Sbjct: 17 QGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNG-TVE 75
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
V + L K V VF ++P EIPW +GA+ V ESTGVFT ++KA+ HLKGGAKKV+
Sbjct: 76 VSGKD-LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVI 134
Query: 126 ISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
ISAP KD PM+V+GVN EY P + +++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTV
Sbjct: 135 ISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTV 194
Query: 184 HSITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
HS+TA Q TVDGPS KDWR GR A NIIP+STGAAK +VG+VI
Sbjct: 195 HSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAK--AVGKVI 239
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A*
1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 426 bits (1097), Expect = e-152
Identities = 133/223 (59%), Positives = 165/223 (73%), Gaps = 7/223 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
IK+GINGFGRIGR+V R A +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDG-TVEV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
KD ++ G K + V R+P + W + G + V E+TG+F + A H+ GAKKVV+
Sbjct: 60 KDGHLIVNG-KKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
+ PSKD PMFV G N +Y + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAK +VG+V+
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAK--AVGKVL 218
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 415 bits (1070), Expect = e-148
Identities = 124/236 (52%), Positives = 162/236 (68%), Gaps = 16/236 (6%)
Query: 7 IKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKH- 61
IK+GINGFGRIGR+V + + ++++VAV D +Y Y +YD+VHG++K+
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 62 ------NELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAA 115
+ KD+ ++ G + + V RNP ++PW K G EYV+ESTG+FT K A
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 116 HLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKV-IHDK 172
HL+GGA+KVVISAP+ A V+GVN EY P E +VSNASCTTNCLAP+ V + +
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKEG 182
Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
FG+ GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAK +VG VI
Sbjct: 183 FGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAK--AVGMVI 236
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 373 bits (961), Expect = e-131
Identities = 114/224 (50%), Positives = 156/224 (69%), Gaps = 8/224 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R AL+ D+E+VAVND + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
+ L+ K + V R+PE + W + G + VVESTG FT ++ AA HL+ GAKKV+I
Sbjct: 60 -NGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDA-PMFVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
SAP+K+ V+GVN+ +Y P+ ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
S T Q+ +D P KD R RAA+ +IIP++TGAAK +V V+
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAK--AVALVL 219
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 373 bits (959), Expect = e-131
Identities = 105/224 (46%), Positives = 143/224 (63%), Gaps = 7/224 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 5 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 62
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
D K V F + ++PW + V+E TG +TDKDKA AH++ GAKKV+I
Sbjct: 63 VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
SAP+ D V N +E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 122 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 181
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
T Q T D P K D R RAA+ NIIP+STGAAK ++G+VI
Sbjct: 182 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAK--AIGKVI 223
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 363 bits (935), Expect = e-127
Identities = 108/225 (48%), Positives = 161/225 (71%), Gaps = 8/225 (3%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
IK+GINGFGRIGR R + R+++E+VA+ND ++ ++ KYDSVHG +K ++
Sbjct: 2 AIKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFKG-SVE 59
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
KD+ +++ K + VF ++P +IPW G + V+E+TGVF D++ A+ HL+GGAKKV+
Sbjct: 60 AKDD-SIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVI 118
Query: 126 ISAPSKDA-PMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
I+AP+K+ V+GVNE++Y P E +I+SNASCTTNCLAP KV+++ FG+ +G M TV
Sbjct: 119 ITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTV 178
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
H+ T Q+ +D P KD+R RAA+ NI+P++TGAAK ++G VI
Sbjct: 179 HAYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAK--AIGEVI 220
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 360 bits (926), Expect = e-126
Identities = 102/226 (45%), Positives = 138/226 (61%), Gaps = 8/226 (3%)
Query: 6 KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
K+K+ INGFGRIGR R R +++V +ND +++ KYDS+ G + +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
+K + + K + V RNP +PW G + V+E TGVF D+D A HL+ GAKK
Sbjct: 59 VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
V+I+AP K P +VVGVNE+ Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
HS T Q+ +D +D R RAA NI+P+STGAAK +V V+
Sbjct: 179 THSYTGDQRLLDAS-HRDLRRARAACLNIVPTSTGAAK--AVALVL 221
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural
genomics, national institute of allergy AN infectious
diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 357 bits (919), Expect = e-125
Identities = 99/225 (44%), Positives = 147/225 (65%), Gaps = 8/225 (3%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
++ INGFGRIGR+V R A++ E+VA+N + ++ + ++ KYD+VHG++ ++
Sbjct: 4 MTRVAINGFGRIGRMVFRQAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKFDG-TVE 61
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
E LL K + + R+P+E+PW G E V+E+TG F K+KA H++ GAKKV+
Sbjct: 62 A-FEDHLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVI 120
Query: 126 ISAPSKDA-PMFVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
++AP K+ VVGVNE + ++SNASCTTNCLAP+ KV+ ++FGI GLMTTV
Sbjct: 121 LTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTV 180
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
H+ T QK +D P KD R RA +IIP++TGAAK ++ +V+
Sbjct: 181 HAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAK--ALAKVL 222
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 352 bits (907), Expect = e-123
Identities = 107/224 (47%), Positives = 146/224 (65%), Gaps = 9/224 (4%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R L VE+ +ND + ++ KYDS++ ++ E+
Sbjct: 1 MKVGINGFGRIGRQVFR-ILHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFPG-EVAY 57
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
D++ L K + ++P+EIPWA+ G V+ESTGVFTD DKA AHL+GGAKKV+I
Sbjct: 58 -DDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 127 SAPSKDA-PMFVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
+AP+K V+GVN + Y P I+SNASCTTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVH 176
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
S T Q+ +D P KD R RAA+ NIIP++TGAAK + V+
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAK--ATALVL 217
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 351 bits (903), Expect = e-122
Identities = 99/229 (43%), Positives = 147/229 (64%), Gaps = 13/229 (5%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
+K+ INGFGRIGR V ++A +R +++VA+ND + ++ KYDS G + +++
Sbjct: 21 SMKLAINGFGRIGRNVFKIAFERG-IDIVAIND-LTDPKTLAHLLKYDSTFGVYNK-KVE 77
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAA----HLK-GG 120
+ ++ + + + R+P+ +PWAK G + V+ESTGVF+ H+ G
Sbjct: 78 S-RDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAG 136
Query: 121 AKKVVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
AKKV+++ P+KD V+GVN+ + +L VSNASCTTNCLAPLAKV+H+ FGI +GL
Sbjct: 137 AKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGL 196
Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
MTTVH+ T Q+ +D P D R RAA+ +IIP+STGAAK +VG V+
Sbjct: 197 MTTVHAYTNDQRILDLPH-SDLRRARAAALSIIPTSTGAAK--AVGLVL 242
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 349 bits (898), Expect = e-121
Identities = 100/228 (43%), Positives = 145/228 (63%), Gaps = 11/228 (4%)
Query: 6 KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
I++ INGFGRIGR R R D+E+VA+N+ ++ +YDSV G++ +
Sbjct: 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTS-DARTAAHLLEYDSVLGRFNA-D 59
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
+ DE ++ K + + RNP +PW + + V+ESTGVF + A+ H++ GAKK
Sbjct: 60 ISY-DENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKK 118
Query: 124 VVISAPSK--DAPMFVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
V+I+AP K +V+GVN+ EY+ E ++SNASCTTNCLAP+AKV+HD FGI++G M
Sbjct: 119 VLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTM 178
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TT HS T Q+ +D +D R RAA+ NI+P++TGAAK +V VI
Sbjct: 179 TTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAK--AVALVI 223
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold,
oxidoreductase-protein binding complex; HET: NAD; 2.20A
{Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 346 bits (890), Expect = e-120
Identities = 100/228 (43%), Positives = 145/228 (63%), Gaps = 11/228 (4%)
Query: 6 KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
I++ INGFGRIGR R R D+E+VA+N+ ++ +YDSV G++ +
Sbjct: 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTS-DARTAAHLLEYDSVLGRFNA-D 59
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
+ DE ++ K + + RNP +PW + + V+ESTGVF + A+ H++ GAKK
Sbjct: 60 ISY-DENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKK 118
Query: 124 VVISAPSK--DAPMFVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
V+I+AP K +V+GVN+ EY+ E ++SNASCTTNCLAP+AKV+HD FGI++G M
Sbjct: 119 VLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTM 178
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TT HS T Q+ +D +D R RAA+ NI+P++TGAAK +V VI
Sbjct: 179 TTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAK--AVALVI 223
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 342 bits (880), Expect = e-119
Identities = 107/224 (47%), Positives = 154/224 (68%), Gaps = 9/224 (4%)
Query: 8 KIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
++ INGFGRIGRLV R+ +R D+E+VA+ND T + ++ KYDSVH ++ +++
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG-KVE 59
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
E +L+ K + VF +P ++PW G ++V+ESTGVF +++KA HL+ GAKKV+
Sbjct: 60 Y-TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVI 118
Query: 126 ISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
I+AP+K V+G NE + KPE I+S ASCTTN +AP+ KV+H+KFGIV G++TTVH
Sbjct: 119 ITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
S T Q+ +D P KD R RAA+ NIIP++TGAAK +V V+
Sbjct: 179 SYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAK--AVALVV 219
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 327 bits (842), Expect = e-113
Identities = 100/226 (44%), Positives = 148/226 (65%), Gaps = 9/226 (3%)
Query: 6 KIKIGINGFGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
+++ INGFGRIGR + R ++ R D+++VA+ND + ++ +YDSVHG++ E
Sbjct: 2 AVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLG-PVETNAHLLRYDSVHGRFPK-E 59
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
++V T+ G P+ V RNP E+PW + + +E TG+FT +DKAA HL+ GAK+
Sbjct: 60 VEV-AGDTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKR 118
Query: 124 VVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
V++SAP+ A V GVN + + ++SNASCTTNCLAP+A+V++D GI +G MTT
Sbjct: 119 VIVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
+HS T Q T+D KD RAA+ ++IP+STGAAK +VG V+
Sbjct: 179 IHSYTGDQPTLDTMH-KDLYRARAAALSMIPTSTGAAK--AVGLVL 221
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 315 bits (810), Expect = e-108
Identities = 81/228 (35%), Positives = 127/228 (55%), Gaps = 11/228 (4%)
Query: 6 KIKIGINGFGRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
+++ INGFGRIGR V R + ++ +VA+N+ M ++ KYD+ HG++
Sbjct: 2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELA-DAAGMAHLLKYDTSHGRFAW- 59
Query: 63 ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122
E++ + L G+ + V R+ + +PW + G + V++ TGV+ ++ AH+ GAK
Sbjct: 60 EVRQ-ERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 118
Query: 123 KVVISAPSKDA--PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
KV+ S P + V GVN+ + + E IVSNASCTTNC+ P+ K++ D +GI G +
Sbjct: 119 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTV 178
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TT+HS Q+ +D D R RAAS +IIP T A + R
Sbjct: 179 TTIHSAMHDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAA--GITRFF 223
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 313 bits (804), Expect = e-108
Identities = 94/227 (41%), Positives = 135/227 (59%), Gaps = 11/227 (4%)
Query: 7 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
I++ ING+GRIGR + R + D+E+VA+ND ++ +YD+ HG++
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLG-DPKTNAHLTRYDTAHGKFPG-T 59
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
+ V + ++ + V RNP ++PW + V+E TG FT K+KA AH+KGGAKK
Sbjct: 60 VSV-NGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK 118
Query: 124 VVISAPSKDA--PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
V+ISAP V GVN K ++SNASCTTNCLAPL K ++DK G+ +GLMT
Sbjct: 119 VIISAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTNCLAPLVKPLNDKLGLQDGLMT 178
Query: 182 TVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVI 228
TVH+ T Q D +D R R+A+ ++IP+ TGAA +VG V+
Sbjct: 179 TVHAYTNNQVLTDVYH-EDLRRARSATMSMIPTKTGAAA--AVGDVL 222
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 254 bits (650), Expect = 2e-84
Identities = 46/235 (19%), Positives = 73/235 (31%), Gaps = 23/235 (9%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
K+ ING+G IG+ VA +DD+E++ V D+ + +V +K
Sbjct: 2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTK--TKPDFEARL----AVEKGYKLFVAI 55
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
+E+ LF + G I A+ VV+ K K K +
Sbjct: 56 PDNERVKLFEDA-----GIPVEGTILDIIEDADIVVDGAPKKIGKQNLENIYKPHKVKAI 110
Query: 126 ISAPSKDA---PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
+ K F + + D V SC T L + I+ I + +
Sbjct: 111 LQGGEKAKDVEDNFNALWSYNRCYGK-DYVRVVSCNTTGLCRILYAINSIADIKKARIVL 169
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK-VHSVGRVIIFYFFGLA 236
V GP A + N + + V SV A
Sbjct: 170 VRRAADPNDDKTGPV-------NAITPNPVTVPSHHGPDVVSVVPEFEGKILTSA 217
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 251 bits (644), Expect = 1e-83
Identities = 47/233 (20%), Positives = 76/233 (32%), Gaps = 28/233 (12%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
K+K+G+NG+G IG+ VA ++DD+EL+ + D+ Y K + E
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITK--TKPDFEAYRAKELGIPVYAASEEFI 59
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
+ EK GF + + +V++T + K G K +
Sbjct: 60 PRFEKE-----------GFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108
Query: 126 ISAPSKDAP--MFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
D FV N + + + V SC T L I + V +M
Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGK-NYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRR 167
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFYFFGLA 236
+ K RG A + + V VI +A
Sbjct: 168 AADPNDTK----------RGPINAIKPTVEVPSHHGP--DVQTVIPINIETMA 208
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase,
oxidoreductase; HET: NAP; 2.10A {Methanothermus
fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 246 bits (631), Expect = 1e-81
Identities = 43/218 (19%), Positives = 74/218 (33%), Gaps = 27/218 (12%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+ ING+G +G+ VA Q+DD++++ V+ + + K ++
Sbjct: 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAI------- 54
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
E+ LF + + V G + A+ V++ T + + G K +
Sbjct: 55 -PERVKLFEKAGIEVAGTVDD-----MLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108
Query: 127 SAPSKDAP--MFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
+ F N +E + D SC T L K +HD FGI + V
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGK-DYTRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIVR 167
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVH 222
+ GP IIP+ H
Sbjct: 168 RGADPAQVSKGPIN-----------AIIPNPPKLPSHH 194
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 169 bits (430), Expect = 2e-51
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 20/214 (9%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+ + +NG+G IG+ VA +++ D++LV V S +Y ++ + + V
Sbjct: 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAK--TSPNYEAFIAHRRGIR-------IYV 52
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
+ F E + V G + ++ VV++T +L+ +
Sbjct: 53 PQQSIKKFEESGIPVAG-----TVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQ 107
Query: 127 SAPSKDAPMFVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
+ + + SC T L ++ + + T V
Sbjct: 108 GGEKAEVADISFSALCNYNEALGKKYIRVVSCNTTALLRTICTVNKVSKVEKVRATIVRR 167
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 219
++ GP +PS
Sbjct: 168 AADQKEVKKGPI-----NSLVPDPATVPSHHAKD 196
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 53.8 bits (129), Expect = 9e-09
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVND 38
M DKKI+ I G+G IGR + + D E+ +
Sbjct: 4 MTDDKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVR 41
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3
PDB: 1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 50.7 bits (121), Expect = 1e-07
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV 36
I++ I G+G +GR V ++ ++ D++LV +
Sbjct: 2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGI 33
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM
binding rossmann fold, structural genomics; HET: MSE
PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 45.4 bits (108), Expect = 6e-06
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPF 40
A + +++ + G GR G+ R LV +
Sbjct: 5 PANNSPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSN 44
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 44.2 bits (105), Expect = 2e-05
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 1 MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPF 40
+ K ++ I G GR+G + + V+LVA
Sbjct: 3 VTTRKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALD 43
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle
pigment, heme, bilirubin, NADH; 1.20A {Rattus
norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A
2h63_A*
Length = 294
Score = 42.9 bits (101), Expect = 4e-05
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
+ K + + G GR G + R + +
Sbjct: 2 ITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF 40
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 42.7 bits (101), Expect = 4e-05
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 5 KKIKIGINGFGRIGRLV-ARVALQRDDVELVAVNDP 39
K IK+G+ G G I + + + + E V P
Sbjct: 5 KNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTP 40
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 42.6 bits (101), Expect = 4e-05
Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 26/148 (17%)
Query: 4 DKKIKIGING-FGRIGRLVARVALQRDDVELVAV----NDPFISTDYMTYMFKYDSVHGQ 58
D I++ I G GR+GR + + AL + V+L A + +D
Sbjct: 3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGA------- 55
Query: 59 WKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPW-----AKTGAEYVVESTGVFTDKDKA 113
+ V+ + + V F PE + G V+ +TG F + K
Sbjct: 56 -GKTGVTVQSSLDAVKDDFDV-FIDFTRPEGTLNHLAFCRQHGKGMVIGTTG-FDEAGKQ 112
Query: 114 AAHLKGGAKKVVISAPSKDAPMFVVGVN 141
A ++ A + I A F VGVN
Sbjct: 113 A--IRDAAADIAIVF----AANFSVGVN 134
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 42.7 bits (101), Expect = 5e-05
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPF 40
++I + G GRIG + A D+ELV + DPF
Sbjct: 3 LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPF 38
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 42.3 bits (100), Expect = 6e-05
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 5 KKIKIGINGFGRIGRLV-ARVALQRDDVELVAVNDP 39
KK++IG+ G G I + V D L P
Sbjct: 4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSP 39
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 41.5 bits (98), Expect = 1e-04
Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 26/147 (17%)
Query: 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAV----NDPFISTDYMTYMFKYDSVHGQW 59
+++ + G GR+GR + +R DVEL AV F+ D +
Sbjct: 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGS-------- 71
Query: 60 KHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPW-----AKTGAEYVVESTGVFTDKDKAA 114
+++ D+ F + F P+ A+ +++ +TG F+ ++A
Sbjct: 72 DFLGVRITDDPESAFSNTEG-ILDFSQPQASVLYANYAAQKSLIHIIGTTG-FSKTEEAQ 129
Query: 115 AHLKGGAKKVVISAPSKDAPMFVVGVN 141
+ AK I + +GVN
Sbjct: 130 --IADFAKYTTIVK----SGNMSLGVN 150
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 41.2 bits (97), Expect = 2e-04
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 1 MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPF 40
+K GI G G IG + R+A VE+VAV D
Sbjct: 18 YFQGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIV 58
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 40.8 bits (96), Expect = 2e-04
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPF 40
++IG+ G G IG+ + R+ + E+VAV D
Sbjct: 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVN 37
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics;
1.70A {Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 40.4 bits (95), Expect = 3e-04
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
+ + G GR ++A + + ++LV
Sbjct: 4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSR 38
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion,
hydrolase; HET: NAD; 2.3A {Flavobacterium
meningosepticum} PDB: 2ixb_A*
Length = 444
Score = 40.5 bits (94), Expect = 3e-04
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
KK++I G G+ +RDDVE+VA DP
Sbjct: 18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADP 53
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH,
oxidoreductase; 1.80A {Staphylococcus aureus}
Length = 243
Score = 39.9 bits (94), Expect = 3e-04
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 30/140 (21%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
+KI + G+G + + VAR+A + E+V V +
Sbjct: 2 ASMKILLIGYGAMNQRVARLA-EEKGHEIVGVIENT-------------------PKATT 41
Query: 65 KVKDEKTLLFGEKPVAVFGFRNPE---EIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121
+ + + + F NP + VV +TG +K L +
Sbjct: 42 PYQQYQHIADVKGADVAIDFSNPNLLFPLLDEDFHLPLVVATTG-EKEKLLNK--LDELS 98
Query: 122 KKVVISAPSKDAPMFVVGVN 141
+ + + + GV+
Sbjct: 99 QNMPVFF----SANMSYGVH 114
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 40.2 bits (94), Expect = 4e-04
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 6 KIKIGINGFGRIGRLVARVALQR-DDVELVAVNDP 39
KI+ GI G G G ++ A++ D ++VA DP
Sbjct: 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDP 36
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD;
1.90A {Archaeoglobus fulgidus}
Length = 236
Score = 39.3 bits (91), Expect = 4e-04
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVND 38
+G+ G+G IG+ +A L+R+ E+ A+ D
Sbjct: 2 LVGLIGYGAIGKFLAE-WLERNGFEIAAILD 31
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 39.5 bits (93), Expect = 5e-04
Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 27/147 (18%)
Query: 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAV----NDPFISTDYMTYMFKYDSVHGQW 59
+KI I G GR+GR++ L D LV P + D ++
Sbjct: 6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFL---------G 56
Query: 60 KHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPW-----AKTGAEYVVESTGVFTDKDKAA 114
K + + D+ + + + F PE + + V+ +TG F++ KA
Sbjct: 57 KQTGVALTDDIERVC-AEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTG-FSEPQKAQ 114
Query: 115 AHLKGGAKKVVISAPSKDAPMFVVGVN 141
L+ +K+ + + VGVN
Sbjct: 115 --LRAAGEKIALVF----SANMSVGVN 135
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 39.3 bits (92), Expect = 7e-04
Identities = 8/35 (22%), Positives = 10/35 (28%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
KKI+ G L EL V +
Sbjct: 3 KKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFES 37
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 39.2 bits (92), Expect = 8e-04
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPF 40
++IG+ G GRIG + A DD L A++D
Sbjct: 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVR 36
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 39.3 bits (92), Expect = 8e-04
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 5 KKIKIGINGFGRIGRLV-ARVALQRDDVELVAVNDP 39
IK+G+ G G + LQ D+ +VA D
Sbjct: 4 SLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDS 39
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom
protein structure initiative, PSI, NEW YORK structural
GENO research consortium; HET: NAD; 1.95A {Listeria
innocua}
Length = 359
Score = 38.5 bits (90), Expect = 0.001
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
M+ KK ++ I G+G +G +A D++E+ V D
Sbjct: 1 MS-LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDI 38
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase,
rossmann-fold, sugar metabolism,
1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A
{Ensifer adhaerens}
Length = 332
Score = 38.0 bits (89), Expect = 0.002
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
+ G+ G I R A++ E+V++
Sbjct: 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMST 33
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis,
NADH binding specificity, TB structural genomics
consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium
tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A
1yl7_A* 1yl6_A*
Length = 245
Score = 37.5 bits (88), Expect = 0.002
Identities = 31/144 (21%), Positives = 48/144 (33%), Gaps = 43/144 (29%)
Query: 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
+++G+ G G++G + R DD+ L A D
Sbjct: 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDA-------------------------- 34
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEE----IPWA-KTGAEYVVESTGVFTDKDKAAAHLKGG 120
D +LL V F +P+ + + G VV +TG FT +
Sbjct: 35 -GDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG-FTAERFQQVESWLV 92
Query: 121 AKK---VVISAPSKDAPMFVVGVN 141
AK V+I AP F +G
Sbjct: 93 AKPNTSVLI------APNFAIGAV 110
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase;
oxidoreductase, structural genomics, NPPSFA; 2.40A
{Sulfolobus tokodaii}
Length = 350
Score = 37.2 bits (87), Expect = 0.003
Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 40/168 (23%)
Query: 75 GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT-----------DKDKAAAHLKGGAKK 123
G+K + +IP + + + ST + A + K
Sbjct: 43 GKKYKDAVKWIEQGDIP--EEVQDLPIVSTNYEDHKDVDVVLSALPNELAESIELELVKN 100
Query: 124 --VVISAPS-----KDAPMFVVGVN----------EKEYKPELDIVSNASCTTNCLAPLA 166
+V+S S D P+ +N ++ + +V N +CT ++
Sbjct: 101 GKIVVSNASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPI 160
Query: 167 KVIHDKFGIVEGLMTTVHSIT-ATQKTVDGPSMKDWRGGRAASFNIIP 213
K + + + ++TT+ +++ A + ++ NIIP
Sbjct: 161 KPLIEIATKSKIIITTLQAVSGAGYNGISFMAI---------EGNIIP 199
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein
translocation, periplasmic oxidoreductase, signal
peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas
mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A*
1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Length = 433
Score = 37.4 bits (87), Expect = 0.003
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARVALQR-DDVELVAV 36
M D++ I G G+ + A+
Sbjct: 78 MPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEAL 114
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 37.3 bits (87), Expect = 0.003
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 4 DKKIKIGINGFGRIGRLVARVALQR-DDVELVAVNDP 39
D+KI+ + G GRI + D EL+ V D
Sbjct: 11 DRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDI 47
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 36.3 bits (84), Expect = 0.007
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 6 KIKIGINGFGRIGRLV-ARVALQRDDVELVAV 36
+KI + G G I + V Q D+ELV
Sbjct: 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLC 33
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.79A
{Sinorhizobium meliloti}
Length = 361
Score = 36.3 bits (84), Expect = 0.007
Identities = 4/35 (11%), Positives = 9/35 (25%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
+++ G L R L ++
Sbjct: 25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEK 59
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium, two domain; 2.30A {Rhizobium etli}
Length = 330
Score = 35.5 bits (82), Expect = 0.012
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 5 KKIKIGINGFGRIGRLVARVALQR-DDVELVAVNDPF 40
I + I G G+I R ++ + + +LVA
Sbjct: 24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRH 60
>1ydw_A AX110P-like protein; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.5 PDB: 2q4e_A
Length = 362
Score = 35.4 bits (82), Expect = 0.013
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 2 AGDKKIKIGINGFGRIGRLVARVALQRDDVELVAV 36
A + +I+IG+ G I R V+R + + V
Sbjct: 2 ATETQIRIGVMGCADIARKVSRAIHLAPNATISGV 36
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 35.3 bits (82), Expect = 0.014
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTD 44
+GI G GRIGR VA Q ++ + DP IS +
Sbjct: 167 TLGILGLGRIGREVATRM-QSFGMKTIG-YDPIISPE 201
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI;
HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3
d.81.1.5
Length = 340
Score = 35.0 bits (81), Expect = 0.016
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARVALQR--DDVELVAVND 38
M +KI++GI G G R + AL+ E+ AV
Sbjct: 13 MKPLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTS 52
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 35.4 bits (82), Expect = 0.016
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTD 44
+G+ G GRIG+LVA+ +VA DP++S
Sbjct: 145 VGVVGLGRIGQLVAQRI-AAFGAYVVA-YDPYVSPA 178
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center FO structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 35.0 bits (81), Expect = 0.017
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 1 MAGDKKIKIGINGFGRIGR-LVARVALQRDDVELVAVNDP 39
MA KIK+G+ G+G + A + + +EL V+
Sbjct: 4 MA--DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSS 41
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 35.0 bits (81), Expect = 0.018
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 1 MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAV 36
M+ + IK G+ FG G++ A EL +
Sbjct: 1 MS-LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKI 36
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics,
putative oxidoreductase YVAA, oxidoredu PSI-2, protein
structure initiative; 2.03A {Bacillus subtilis subsp}
PDB: 3gfg_A
Length = 358
Score = 34.6 bits (80), Expect = 0.022
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 5 KKIKIGINGFGRIGRL-VARVALQRDDVELVAVND 38
IK+GI G+G G + + D+ ++ +
Sbjct: 4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMT 38
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 34.4 bits (80), Expect = 0.024
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTD 44
IGI GFGRIG VA++A + ++ DP+ + +
Sbjct: 145 IGIIGFGRIGYQVAKIA-NALGMNILL-YDPYPNEE 178
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 34.5 bits (80), Expect = 0.024
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTD 44
+GI G GR+G+ VA A + ++ DP++S
Sbjct: 171 LGIIGLGRVGQAVALRA-KAFGFNVLF-YDPYLSDG 204
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2,
NYSGXRC, 11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 34.6 bits (80), Expect = 0.025
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 4 DKKIKIGINGFGRIGR-LVARVALQRDDVELVAVNDP 39
+ I I + G+G +G+ A + + L V
Sbjct: 5 NNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASR 41
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 34.5 bits (80), Expect = 0.026
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 25/106 (23%)
Query: 124 VVISAPS-----KDAPMFVVGVN----------EKEYKPELDIVSNASCTTNCLAPLAKV 168
++ S S +D P+ + VN ++ + I++N +C+T C K
Sbjct: 109 LIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKP 168
Query: 169 IHDKFGIVEGLMTTVHSIT-ATQKTVDGPSMKDWRGGRAASFNIIP 213
I DKFG+ + T+ +++ A V ++ N+IP
Sbjct: 169 IMDKFGLEAVFIATMQAVSGAGYNGVPSMAI---------LDNLIP 205
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 33.7 bits (78), Expect = 0.042
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTD 44
IGI GFGRIG V +A ++++A D +
Sbjct: 145 IGIVGFGRIGTKVGIIA-NAMGMKVLA-YDILDIRE 178
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE
AMP; 1.79A {Escherichia coli k-12}
Length = 140
Score = 32.5 bits (75), Expect = 0.052
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 11 INGFGRIGRLVARVALQRDDVELVAV-NDP 39
+ G+GR+G L+ L D+ LV +
Sbjct: 12 LVGYGRVGSLLGE-KLLASDIPLVVIETSR 40
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Enterococcus faecalis} PDB:
3fd8_A* 3hnp_A
Length = 349
Score = 33.4 bits (77), Expect = 0.059
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 7 IKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFIS 42
+K+G GFG+ + R+ +E+ + D ++
Sbjct: 3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVN 39
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 33.4 bits (77), Expect = 0.061
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 9 IGINGFGRIGRLVARVAL 26
+GI G+G+IG+LVA
Sbjct: 163 LGIFGYGKIGQLVAGYGR 180
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 32.9 bits (76), Expect = 0.067
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 15/54 (27%)
Query: 9 IGINGFGRIGRLVARVAL---------------QRDDVELVAVNDPFISTDYMT 47
+GI G+G IGR VA +A Q DV + D F +D++
Sbjct: 125 LGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVL 178
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 33.1 bits (76), Expect = 0.072
Identities = 35/167 (20%), Positives = 56/167 (33%), Gaps = 42/167 (25%)
Query: 82 FGFRNPEEIPWAKTGAEYVVESTG----------VFT--DKDKAAAHLKGGAKK--VVIS 127
+ +T + VV+ VF+ D D A K + V+S
Sbjct: 63 DAASWKQTETLPETEQDIVVQECKPEGNFLECDVVFSGLDADVAGDIEKSFVEAGLAVVS 122
Query: 128 APS-----KDAPMFVVGVN---------------EKEYKPELDIVSNASCTTNCLAPLAK 167
KD P+ V VN K K I+ ++C+T L K
Sbjct: 123 NAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVSKGGKKPGFIICISNCSTAGLVAPLK 182
Query: 168 VIHDKFGIVEGL-MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIP 213
+ +KFG ++ L TT+ +I+ + M NI+P
Sbjct: 183 PLVEKFGPIDALTTTTLQAISGAGFSPGVSGM-------DILDNIVP 222
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG,
protein structure initiative, joint center for
structural G oxidoreductase; HET: NAD; 1.90A
{Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB:
1h2h_A*
Length = 253
Score = 32.7 bits (74), Expect = 0.081
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVND 38
+ + I G G IG+ + + + E + D
Sbjct: 10 HHHMTVLIIGMGNIGKKLVELG----NFEKIYAYD 40
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II,
dimeric dihydodiol dehydrogenase, structural genomics;
2.70A {Enterococcus faecalis}
Length = 330
Score = 32.6 bits (75), Expect = 0.089
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV 36
KI+ GI +I + E+ +
Sbjct: 4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGI 35
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase,
probable hydrolase, PS aeruginosa, structurual genomics;
2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Length = 340
Score = 32.9 bits (76), Expect = 0.090
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 13/71 (18%)
Query: 112 KAAAHLKGGAKKVVI---SAPSKD-APMFVVGVNE---KEYKPELDIVSNASCTTNCLAP 164
+A A G VI A AP +V VN ++S+ L
Sbjct: 87 RARAA---GC--SVIDLSGALEPSVAPPVMVSVNAERLASQAAP-FLLSSPCAVAAELCE 140
Query: 165 LAKVIHDKFGI 175
+ +
Sbjct: 141 VLAPLLATLDC 151
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP
binding binding protein; HET: TLO NAP; 1.71A
{Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A*
3rc7_A* 3rc9_A*
Length = 350
Score = 32.7 bits (75), Expect = 0.092
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 2 AGDKKIKIGINGFGRIGRLVARVALQR-DDVELVAV 36
A I++G+ G I A AL+ E+ A+
Sbjct: 23 ANANPIRVGVIGCADIAWRRALPALEAEPLTEVTAI 58
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 32.6 bits (75), Expect = 0.095
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 8 KIGINGFGRIGRLVARVA 25
K+ + G G IG V ++
Sbjct: 126 KVAVLGLGEIGTRVGKIL 143
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 32.6 bits (75), Expect = 0.10
Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 26/132 (19%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDD------VELVAVNDPFISTDYMTYMFKYDSVHGQ 58
K+I+I + G G +G V R+ + +++V V+D
Sbjct: 3 KEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSD----------------SRSY 46
Query: 59 WKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK 118
L + + ++ F PE++ A+ +V+ T D + + +
Sbjct: 47 ASGRNLDISSIISNKEKTGRISDRAFSGPEDL--MGEAADLLVDCTPASRDGVREYSLYR 104
Query: 119 G--GAKKVVISA 128
+ V++A
Sbjct: 105 MAFESGMNVVTA 116
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 32.5 bits (75), Expect = 0.10
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 9 IGINGFGRIGRLVARVAL 26
+GI G G IG+ +AR +
Sbjct: 149 VGILGMGAIGKAIARRLI 166
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 32.6 bits (75), Expect = 0.10
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 9 IGINGFGRIGRLVARVA 25
+G G G IG +A
Sbjct: 148 VGFLGMGAIGLAMADRL 164
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY,
UPF0044, unknown function; NMR {Staphylococcus aureus}
SCOP: d.68.4.1
Length = 104
Score = 30.8 bits (70), Expect = 0.11
Identities = 9/60 (15%), Positives = 25/60 (41%)
Query: 172 KFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFY 231
K GI E ++ + ++ + +++ + + +T + V +G +I+ Y
Sbjct: 25 KGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMIVIY 84
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI
structure 2 function project, S2F, unknown function;
1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB:
1ln4_A
Length = 98
Score = 30.7 bits (70), Expect = 0.11
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 172 KFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKVHSVGRVIIFY 231
G+ EG++ + + + + R + N I T AA+V ++G +++ Y
Sbjct: 26 GNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVLY 85
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A
{Streptococcus agalactiae serogroup V}
Length = 329
Score = 32.6 bits (75), Expect = 0.11
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV 36
K++ G+ ++ + E+VAV
Sbjct: 4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAV 35
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 32.7 bits (75), Expect = 0.11
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPF 40
G+ G G++G + V + +++ DP
Sbjct: 119 YGVVGAGQVGGRLVEVL-RGLGWKVLV-CDPP 148
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 32.3 bits (74), Expect = 0.13
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTD 44
+G GRIG V R DV L D +
Sbjct: 194 VGTVAAGRIGLAVLRRL-APFDVHLHY-TDRHRLPE 227
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Length = 370
Score = 32.2 bits (74), Expect = 0.14
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 112 KAAAHLKGGAKKVVISAPS-----KDAPMFVVGVNEKEYKPELD----IVSNASCTTNCL 162
G K I A S K+A + + VN K+ + +CT + +
Sbjct: 83 ALRQA---GWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFVGGNCTVSLM 139
Query: 163 APLAKVIHDKFGI 175
++++ +
Sbjct: 140 LMALGGLYERGLV 152
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 31.7 bits (72), Expect = 0.14
Identities = 7/30 (23%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 11 INGFGRIGRLVARVALQRDDVELVAV-NDP 39
I G GRIG R + +
Sbjct: 44 ILGMGRIGTGAYDELRARYGKISLGIEIRE 73
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 32.2 bits (74), Expect = 0.14
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTD 44
IG G GRIG+L+ + + L+ +D
Sbjct: 167 IGTVGAGRIGKLLLQRL-KPFGCNLLY-HDRLQMAP 200
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella
melitensis biovar abortus 230ORGANISM_TAXID} PDB:
3upy_A*
Length = 446
Score = 32.1 bits (72), Expect = 0.17
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 2 AGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVND 38
K I+IG+ G G +G + + +E+ A++
Sbjct: 19 ETGKPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSA 55
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 31.8 bits (73), Expect = 0.17
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 8 KIGINGFGRIGRLVARVA 25
+IG+ G G+IGR +A A
Sbjct: 173 RIGVLGLGQIGRALASRA 190
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine
biosynthesis, NADP+ oxidoreductase (phosphorylating),
domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3
d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A
1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A*
1pu2_A* 1q2x_A*
Length = 367
Score = 31.8 bits (73), Expect = 0.18
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 12/73 (16%)
Query: 112 KAAAHLKGGAKKVVISAPS-----KDAPMFVVGVNEKEYKPELD----IVSNASCTTNCL 162
K G + I A S DA + + VN+ L+ +CT + +
Sbjct: 84 KLRES---GWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLM 140
Query: 163 APLAKVIHDKFGI 175
+ +
Sbjct: 141 LMSLGGLFANDLV 153
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 31.9 bits (73), Expect = 0.19
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
+KI + G R + + +A P
Sbjct: 2 SLKICVIGSSGHFRYALEGLDEECSITGIAPGVP 35
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 31.8 bits (73), Expect = 0.19
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 8 KIGINGFGRIGRLVAR 23
++GI G GRIG VA
Sbjct: 166 RVGIIGLGRIGLAVAE 181
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 31.5 bits (72), Expect = 0.21
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 9 IGINGFGRIGRLVARVAL 26
I G GRIG V +
Sbjct: 167 IATIGAGRIGYRVLERLV 184
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 30.7 bits (70), Expect = 0.21
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAV 36
M K + + G GR G + + L R E++AV
Sbjct: 1 MGRIKNKQFAVIGLGRFGGSIVK-ELHRMGHEVLAV 35
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics,
protein structure initiative, PSI, joint center for
structu genomics; HET: NAD PG4; 2.27A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.3
Length = 228
Score = 31.0 bits (71), Expect = 0.22
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 5 KKIKIGING-FGRIGRLVARVALQRDDVELVA 35
+K GI G GR+G+ + +V ELV
Sbjct: 11 HHMKYGIVGYSGRMGQEIQKVF-SEKGHELVL 41
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 31.4 bits (72), Expect = 0.22
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 8 KIGINGFGRIGRLVARVA 25
++GI G GRIGR +A A
Sbjct: 175 RLGIFGMGRIGRAIATRA 192
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 31.4 bits (72), Expect = 0.26
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 8 KIGINGFGRIGRLVARVA 25
IGI G GRIG+ +A+ A
Sbjct: 152 TIGIIGLGRIGQAIAKRA 169
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle
structural genomics center for infectious disease
(ssgcid); 1.55A {Burkholderia thailandensis}
Length = 377
Score = 31.0 bits (71), Expect = 0.28
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 12/73 (16%)
Query: 112 KAAAHLKGGAKKVVISAPS-----KDAPMFVVGVNEKEYKPELD----IVSNASCTTNCL 162
K A G I A S DA + + VN K L +CT + +
Sbjct: 87 KLRAA---GWNGYWIDAASSLRMKDDAVIILDPVNLNVIKDALVNGTKNFIGGNCTVSLM 143
Query: 163 APLAKVIHDKFGI 175
+ + +
Sbjct: 144 LMALGGLFRENLV 156
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 31.1 bits (71), Expect = 0.29
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFI 41
IGI G G +G + + + + DP
Sbjct: 122 IGIVGVGNVGSRLQTRL-EALGIRTLL-CDPPR 152
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Length = 393
Score = 31.2 bits (71), Expect = 0.30
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 5 KKIKIGINGFGRIG-------RLVARVALQRDDVELVAVNDP 39
K + IG+ G G +G V V + LV + +
Sbjct: 24 KPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEA 65
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 31.1 bits (71), Expect = 0.31
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 9 IGINGFGRIGRLVARVALQ 27
+G G G I + +AR A+
Sbjct: 166 LGAVGLGAIQKEIARKAVH 184
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 31.0 bits (71), Expect = 0.32
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 9 IGINGFGRIGRLVARVA 25
+GI G GRIG+ +AR
Sbjct: 158 VGIIGLGRIGQAIARRL 174
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 31.0 bits (71), Expect = 0.34
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 9 IGINGFGRIGRLVARVA 25
+GI GFG IG+ +A+ A
Sbjct: 149 LGIYGFGSIGQALAKRA 165
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 31.0 bits (71), Expect = 0.36
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 9 IGINGFGRIGRLVARVA 25
+G+ G GRIG+ VA+ A
Sbjct: 147 LGLVGMGRIGQAVAKRA 163
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker,
ancillary protein KEFF; potassium channel regulation,
domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia
coli} PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 30.9 bits (70), Expect = 0.40
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 11 INGFGRIGRLVARVALQRDDVELVAV-NDP 39
I GFGR G++ R+ L V++V + +DP
Sbjct: 9 IAGFGRFGQITGRL-LLSSGVKMVVLDHDP 37
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 29.9 bits (68), Expect = 0.41
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAV-NDP 39
M + + + + G G + R L +++AV
Sbjct: 1 MTENGRYEYIVIGSEAAGVGLVR-ELTAAGKKVLAVDKSK 39
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80;
transcription, galactose metabolism, repressor; 2.10A
{Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB:
3e1k_A
Length = 479
Score = 30.8 bits (69), Expect = 0.44
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARV---ALQR--DDVELVAVNDP 39
+ + I++G G VA+ A+Q+ ++VA+ +P
Sbjct: 34 VPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNP 77
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural
genomics; 2.70A {Thermus thermophilus}
Length = 331
Score = 30.5 bits (70), Expect = 0.46
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 70 KTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129
L F + + V E +P + V+ S G + KA +GGA +V+
Sbjct: 41 VRLAFRGEEIPV------EPLPEGPLPVDLVLASAGGGISRAKALVWAEGGA--LVVDNS 92
Query: 130 S-----KDAPMFVVGVNEKEYKPELDIVSNASCTT-NCLAPLAKVIHDKFGI 175
S P+ V VN ++ I++N +CTT L +H F
Sbjct: 93 SAWRYEPWVPLVVPEVNREKIFQHRGIIANPNCTTAILAMAL-WPLHRAFQA 143
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 30.3 bits (69), Expect = 0.56
Identities = 9/47 (19%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSV 55
+G+ G G IG++ ++ ++ +++ D F + + + DS+
Sbjct: 149 VGVVGTGHIGQVFMQI-MEGFGAKVIT-YDIFRNPELEKKGYYVDSL 193
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 28.6 bits (64), Expect = 0.73
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAV 36
+ I + G G+IG+++A + + +
Sbjct: 2 NAMRWNICVVGAGKIGQMIAALLKTSSNYSVTVA 35
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 29.3 bits (66), Expect = 0.74
Identities = 2/24 (8%), Positives = 6/24 (25%), Gaps = 1/24 (4%)
Query: 13 GFGRIGRLVARVALQRDDVELVAV 36
G + L + + +
Sbjct: 10 GHSILAINTIL-QLNQRGQNVTVI 32
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 29.9 bits (68), Expect = 0.78
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 9 IGINGFGRIGRLVARVA 25
+G+ G GRIG VA
Sbjct: 144 LGVIGTGRIGSRVAMYG 160
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.81
Identities = 37/237 (15%), Positives = 70/237 (29%), Gaps = 67/237 (28%)
Query: 15 GRIGRLVARVALQRDDVELVAVNDPF--ISTDYMTYMFKYDSVHGQ--WKHNELK---VK 67
G LV VA+ D + F +T +F + V + + L ++
Sbjct: 272 GHSQGLVTAVAIAETDSW-----ESFFVSVRKAITVLF-FIGVRCYEAYPNTSLPPSILE 325
Query: 68 DEKTLLFGEK-P---VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAA-HLKGGAK 122
D E P +++ E++ + V T K L GAK
Sbjct: 326 DSLEN--NEGVPSPMLSISNL-TQEQV-------QDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 123 KVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAK---VIHDKFGIVEGL 179
+V+S P + + + + + LD P ++ ++F L
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLD---------QSRIPFSERKLKFSNRF-----L 421
Query: 180 MTTV--HS---ITATQK----------TVDGPSMK-------DWRGGRAASFNIIPS 214
HS + A+ + + ++ D R S +I
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Escherichia coli k-12}
Length = 345
Score = 29.6 bits (67), Expect = 0.85
Identities = 9/31 (29%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 7 IKIGINGFGRIGRLV-ARVALQRDDVELVAV 36
I GFG+ L R D VA
Sbjct: 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAH 33
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 29.5 bits (67), Expect = 0.92
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 8 KIGINGFGRIGRLVARVA 25
+GI G+G IG V +A
Sbjct: 158 TLGIVGYGNIGSQVGNLA 175
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 29.5 bits (67), Expect = 1.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 8 KIGINGFGRIGRLVARVA 25
K+GI G+G IG + +A
Sbjct: 147 KLGIIGYGHIGTQLGILA 164
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS
protein structure initiative, midwest center for
structural genomics; HET: MSE; 1.90A {Thermoplasma
volcanium GSS1} PDB: 3jsa_A*
Length = 331
Score = 29.1 bits (66), Expect = 1.3
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDD-------VELVAVND 38
K I + I G G +G + R+ ++ +V V D
Sbjct: 5 KTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVAD 45
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia
reductive methylation, structural genomics, PSI-2,
protein initiative; HET: MLY; 2.00A {Streptococcus
pneumoniae} PDB: 2ho5_A
Length = 325
Score = 28.9 bits (65), Expect = 1.4
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36
+K+G+ G G I A + +LVA+
Sbjct: 2 LKLGVIGTGAISHHFIEAAHTSGEYQLVAI 31
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 28.6 bits (63), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV 36
+ I + G G + +A+ AL R +V V
Sbjct: 9 EDTPIVLIGAGNLATNLAK-ALYRKGFRIVQV 39
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 28.8 bits (65), Expect = 1.9
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 8 KIGINGFGRIGRLVARVA 25
++ I G G+IG+ +A A
Sbjct: 139 QLLIYGTGQIGQSLAAKA 156
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 28.4 bits (63), Expect = 1.9
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 8 KIGINGFGRIGRLVARVALQRD-DVELVAVN 37
+ + G GR+G VAR V++ A
Sbjct: 157 NVAVLGLGRVGMSVARKFAALGAKVKVGARE 187
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 28.4 bits (64), Expect = 2.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 9 IGINGFGRIGRLVARVA 25
+G+ G GRIGR+ A++
Sbjct: 149 VGVVGLGRIGRVAAQIF 165
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 28.3 bits (64), Expect = 2.6
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 9 IGINGFGRIGRLVARVA 25
+G+ G G IG++ ++
Sbjct: 148 VGVMGTGHIGQVAIKLF 164
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 27.8 bits (62), Expect = 3.1
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 15 GRIGRLVARVALQRDDVELVAV 36
G+I R V + ++
Sbjct: 33 GQIARHVINQLADKQTIKQTLF 54
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid
biosynthesis, diaminopimelate biosynthesis, lysine
biosynthesis; HET: SO4; 1.95A {Mycobacterium
tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Length = 344
Score = 27.9 bits (63), Expect = 3.2
Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 36/108 (33%)
Query: 96 GAEYVVE--STGVFTDKD----------------KAAAHLKGGAKKVVI---SA----PS 130
G E VE T + D + AA G VI SA P
Sbjct: 48 GQEIEVEDAETADPSGLDIALFSAGSAMSKVQAPRFAAA---GV--TVIDNSSAWRKDP- 101
Query: 131 KDAPMFVVGVNE---KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 175
D P+ V VN +P+ I++N +CTT P+ KV+HD+ +
Sbjct: 102 -DVPLVVSEVNFERDAHRRPK-GIIANPNCTTMAAMPVLKVLHDEARL 147
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 27.7 bits (61), Expect = 3.2
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 15 GRIGRLVARVALQRDDVELVAV 36
G+I + + L D+ +
Sbjct: 15 GQIAQXLTATLLTYTDMHITLY 36
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding,
oxidoreductase-oxidoreductase I complex; HET: 25A L14;
1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A*
2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A*
3q1l_A
Length = 366
Score = 27.9 bits (63), Expect = 3.3
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 28/103 (27%)
Query: 96 GAEYVVE--STGVFTDKD----------------KAAAHLKGGAKKVVISAPS-----KD 132
+ +E + F D A G VV+ S D
Sbjct: 49 DQDITIEETTETAFEGVDIALFSAGSSTSAKYAPYAVKA---GV--VVVDNTSYFRQNPD 103
Query: 133 APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 175
P+ V VN I++ +C+T + + + K+G+
Sbjct: 104 VPLVVPEVNAHALDAHNGIIACPNCSTIQMMVALEPVRQKWGL 146
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change,
half-OF-sites-reactivity, protein evolution, sequence
homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A*
2r00_C*
Length = 336
Score = 27.4 bits (62), Expect = 4.1
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 70 KTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129
KT F K V V +N EE W + + S G A + G VVI
Sbjct: 44 KTYRFNGKTVRV---QNVEEFDW--SQVHIALFSAGGELSAKWAPIAAEAGV--VVIDNT 96
Query: 130 S-----KDAPMFVVGVNE---KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 175
S D P+ V VN E++ +I++N +C+T + K I+D GI
Sbjct: 97 SHFRYDYDIPLVVPEVNPEAIAEFRNR-NIIANPNCSTIQMLVALKPIYDAVGI 149
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Length = 262
Score = 27.2 bits (61), Expect = 4.3
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 75 GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTD 109
G + + GF + + + + TD
Sbjct: 136 GCQMTILLGFASENVKILENEFSNLKNVTLKIATD 170
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A
{Bacillus subtilis} SCOP: c.1.4.1
Length = 240
Score = 27.0 bits (59), Expect = 6.0
Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 17/113 (15%)
Query: 9 IGINGFGRIGRLV-ARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL--- 64
N + L A L DD+ A ++ + Y G E
Sbjct: 121 CIANPDCKAAALTEADADLNMDDIVAYA-----RVSELLQLPIFYLEYSGVLGDIEAVKK 175
Query: 65 --KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAA 115
V + TL +G G ++ E A+ +V V+ D D+A
Sbjct: 176 TKAVLETSTLFYG------GGIKDAETAKQYAEHADVIVVGNAVYEDFDRALK 222
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.6 bits (58), Expect = 6.5
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 17/107 (15%)
Query: 15 GRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLL 73
G +G +A+Q + E+ + + + + S + ++ K K +K L+
Sbjct: 114 GSVG-----MAIQVNYSSEVKENSVDSDDKAKVPPLIRIVS---GLELSDTKQKGKKFLV 165
Query: 74 FGEKPVAVFGFRNP-EEIPWAK-----TGAEYVVESTGVFT--DKDK 112
+P P EI +++ + V E T D
Sbjct: 166 IAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAIS 212
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol,
PI(4,5)P2, cell adhesion, protein transport; 1.47A
{Rattus norvegicus} PDB: 3hpb_A
Length = 161
Score = 26.3 bits (57), Expect = 6.9
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 24 VALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
V L D + + D D + + + ++ E V
Sbjct: 4 VDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSV 46
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic
transcription repressor, acetylation, carbohydrate
metabolism; 2.10A {Saccharomyces cerevisiae} PDB:
3bts_A 3v2u_A* 3btu_A
Length = 438
Score = 26.8 bits (59), Expect = 7.0
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARV---ALQR--DDVELVAVNDP 39
+ I++G G + A+ + ++ A+ P
Sbjct: 15 VPNAAPIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSP 58
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 27.0 bits (61), Expect = 7.7
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 95 TGAEYVVESTGVFTDKDKAAAHLKGG 120
TG Y + G+FT K LK G
Sbjct: 228 TGQTYNADRLGIFTPKQVDRTELKCG 253
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 26.7 bits (60), Expect = 8.6
Identities = 10/26 (38%), Positives = 10/26 (38%)
Query: 95 TGAEYVVESTGVFTDKDKAAAHLKGG 120
TG EY V G T K L G
Sbjct: 230 TGKEYEVTEVGAQTPKMTKFDKLSAG 255
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO
structural genomics, PSI, protein structure initiative,
secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1
c.65.1.1
Length = 260
Score = 26.5 bits (59), Expect = 8.6
Identities = 8/50 (16%), Positives = 20/50 (40%)
Query: 102 ESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDI 151
S+G+ ++ + K +I A +K + +KE + + +
Sbjct: 10 HSSGLVPRGSQSTSLYKKAGLMNIIIATTKSWNIKNAQKFKKENESKYNT 59
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 26.2 bits (57), Expect = 9.0
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 2 AGDKKIKIGINGFGRIGRLVARVALQ 27
+ +K+ + I G G G+ + LQ
Sbjct: 15 SSEKQGVVCIFGTGDFGKSLGLKMLQ 40
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric
dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A
{Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Length = 334
Score = 26.5 bits (59), Expect = 9.1
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 7 IKIGINGFGRIGRLVARV--ALQRDDVELVAV 36
++ GI G I V L R + ++VAV
Sbjct: 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAV 34
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural
genomics, midwest cente structural genomics; 2.15A
{Thiobacillus denitrificans}
Length = 444
Score = 26.4 bits (59), Expect = 9.9
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 5 KKIKIGINGFGRIGRLVARV 24
K I +G+ G G +G V
Sbjct: 9 KPIHVGLLGLGTVGGGTLTV 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,888,457
Number of extensions: 233238
Number of successful extensions: 729
Number of sequences better than 10.0: 1
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 157
Length of query: 250
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,160,982
Effective search space: 661596138
Effective search space used: 661596138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)