Query 025640
Match_columns 250
No_of_seqs 124 out of 1139
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:56:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00246 proteasome subunit al 100.0 2.1E-63 4.6E-68 425.3 29.8 247 1-247 1-248 (253)
2 cd03750 proteasome_alpha_type_ 100.0 3.8E-60 8.2E-65 399.3 28.7 226 5-237 1-226 (227)
3 PRK03996 proteasome subunit al 100.0 6.4E-59 1.4E-63 395.2 29.3 232 3-240 8-239 (241)
4 cd03752 proteasome_alpha_type_ 100.0 3.6E-59 7.8E-64 389.8 26.2 213 3-215 1-213 (213)
5 KOG0178 20S proteasome, regula 100.0 1.9E-59 4.1E-64 372.0 23.2 247 1-248 1-248 (249)
6 TIGR03633 arc_protsome_A prote 100.0 2.9E-58 6.3E-63 387.2 26.8 223 4-232 2-224 (224)
7 cd03751 proteasome_alpha_type_ 100.0 6.4E-58 1.4E-62 381.5 25.9 211 3-215 2-212 (212)
8 KOG0176 20S proteasome, regula 100.0 3.2E-58 6.9E-63 361.7 19.7 229 4-239 7-240 (241)
9 cd03755 proteasome_alpha_type_ 100.0 3.1E-57 6.6E-62 376.6 26.0 207 5-215 1-207 (207)
10 cd03749 proteasome_alpha_type_ 100.0 7.9E-57 1.7E-61 375.0 26.0 208 5-216 1-211 (211)
11 COG0638 PRE1 20S proteasome, a 100.0 3.2E-56 6.9E-61 376.3 28.6 234 3-243 1-235 (236)
12 cd03756 proteasome_alpha_arche 100.0 1.7E-56 3.8E-61 373.2 26.5 210 4-216 1-210 (211)
13 cd03754 proteasome_alpha_type_ 100.0 1.7E-56 3.6E-61 374.0 25.8 210 4-215 1-215 (215)
14 cd01911 proteasome_alpha prote 100.0 4.3E-56 9.3E-61 370.4 24.8 209 5-215 1-209 (209)
15 KOG0184 20S proteasome, regula 100.0 1.2E-55 2.5E-60 353.0 21.4 243 1-248 1-246 (254)
16 cd03753 proteasome_alpha_type_ 100.0 1E-54 2.3E-59 363.0 25.6 208 5-215 1-213 (213)
17 KOG0183 20S proteasome, regula 100.0 5.1E-55 1.1E-59 347.5 16.7 234 3-244 2-237 (249)
18 KOG0181 20S proteasome, regula 100.0 3.6E-53 7.7E-58 332.5 18.2 232 1-240 2-233 (233)
19 KOG0182 20S proteasome, regula 100.0 2.6E-51 5.7E-56 325.8 23.5 236 3-243 7-245 (246)
20 KOG0863 20S proteasome, regula 100.0 1.1E-48 2.3E-53 314.6 21.9 232 3-242 4-238 (264)
21 TIGR03690 20S_bact_beta protea 100.0 9.2E-46 2E-50 310.0 26.1 209 30-244 1-218 (219)
22 PTZ00488 Proteasome subunit be 100.0 2E-45 4.3E-50 312.2 26.6 209 27-245 35-243 (247)
23 TIGR03691 20S_bact_alpha prote 100.0 2.2E-45 4.7E-50 308.5 26.3 207 21-237 17-228 (228)
24 cd03758 proteasome_beta_type_2 100.0 1.8E-45 4E-50 302.7 24.7 186 32-219 2-187 (193)
25 cd03759 proteasome_beta_type_3 100.0 2.9E-45 6.3E-50 302.0 24.9 187 29-219 1-188 (195)
26 cd03760 proteasome_beta_type_4 100.0 6.6E-45 1.4E-49 300.4 23.6 188 30-219 1-191 (197)
27 cd03761 proteasome_beta_type_5 100.0 1.6E-44 3.5E-49 296.0 24.9 183 32-219 1-183 (188)
28 TIGR03634 arc_protsome_B prote 100.0 4.9E-44 1.1E-48 292.4 24.5 184 31-219 1-184 (185)
29 cd03757 proteasome_beta_type_1 100.0 4.7E-44 1E-48 298.3 24.4 188 28-219 5-201 (212)
30 cd03764 proteasome_beta_archea 100.0 2E-43 4.4E-48 289.5 25.2 187 32-228 1-187 (188)
31 cd03765 proteasome_beta_bacter 100.0 1.8E-43 3.8E-48 297.3 23.5 199 32-232 1-214 (236)
32 cd03762 proteasome_beta_type_6 100.0 9E-43 1.9E-47 285.7 24.5 183 32-219 1-183 (188)
33 cd03763 proteasome_beta_type_7 100.0 8.7E-43 1.9E-47 286.0 24.2 182 32-219 1-182 (189)
34 cd01912 proteasome_beta protea 100.0 3.2E-42 6.9E-47 282.5 24.9 184 32-219 1-184 (189)
35 PF00227 Proteasome: Proteasom 100.0 1.2E-42 2.6E-47 285.0 22.1 188 28-215 1-190 (190)
36 cd01906 proteasome_protease_Hs 100.0 2.5E-41 5.4E-46 275.3 24.3 182 32-215 1-182 (182)
37 KOG0177 20S proteasome, regula 100.0 6.4E-39 1.4E-43 251.2 17.0 186 32-219 2-187 (200)
38 KOG0179 20S proteasome, regula 100.0 2.5E-37 5.4E-42 245.7 19.1 190 26-219 24-224 (235)
39 KOG0174 20S proteasome, regula 100.0 6.6E-38 1.4E-42 246.2 14.9 207 27-241 15-221 (224)
40 KOG0175 20S proteasome, regula 100.0 1.1E-34 2.3E-39 237.1 16.7 211 28-248 68-278 (285)
41 KOG0185 20S proteasome, regula 100.0 7.9E-35 1.7E-39 235.1 14.2 226 9-241 13-248 (256)
42 KOG0173 20S proteasome, regula 100.0 2.8E-34 6.1E-39 234.2 16.9 190 24-219 30-219 (271)
43 PRK05456 ATP-dependent proteas 100.0 5.6E-32 1.2E-36 217.2 19.4 167 31-214 1-171 (172)
44 KOG0180 20S proteasome, regula 100.0 4.5E-32 9.8E-37 209.6 17.3 188 28-219 5-193 (204)
45 cd01913 protease_HslV Protease 100.0 2.6E-31 5.6E-36 212.0 19.2 165 32-214 1-170 (171)
46 TIGR03692 ATP_dep_HslV ATP-dep 100.0 8.3E-31 1.8E-35 209.1 18.4 166 32-214 1-170 (171)
47 cd01901 Ntn_hydrolase The Ntn 100.0 3.5E-29 7.7E-34 198.5 22.0 162 32-197 1-163 (164)
48 COG3484 Predicted proteasome-t 99.7 3.8E-16 8.2E-21 124.5 11.8 187 32-220 2-203 (255)
49 COG5405 HslV ATP-dependent pro 99.6 1.7E-14 3.8E-19 111.2 11.3 170 30-216 3-176 (178)
50 PF10584 Proteasome_A_N: Prote 99.6 9.5E-16 2.1E-20 80.1 1.5 23 5-27 1-23 (23)
51 PF09894 DUF2121: Uncharacteri 97.2 0.02 4.4E-07 46.3 13.4 155 32-218 2-180 (194)
52 COG4079 Uncharacterized protei 96.3 0.11 2.5E-06 43.5 11.8 170 32-237 2-197 (293)
53 KOG3361 Iron binding protein i 81.0 2.4 5.2E-05 32.3 3.7 44 148-191 71-114 (157)
54 COG3193 GlcG Uncharacterized p 54.7 45 0.00097 25.9 5.7 46 180-230 5-50 (141)
55 PRK09732 hypothetical protein; 51.8 54 0.0012 25.2 5.8 45 181-230 5-49 (134)
56 smart00481 POLIIIAc DNA polyme 51.0 16 0.00035 23.8 2.5 32 10-41 6-38 (67)
57 PF06057 VirJ: Bacterial virul 49.5 74 0.0016 26.1 6.5 37 101-141 41-77 (192)
58 PF07499 RuvA_C: RuvA, C-termi 42.6 16 0.00035 22.4 1.3 31 164-194 13-44 (47)
59 PRK08452 flagellar protein Fla 35.7 1.2E+02 0.0026 23.0 5.3 56 185-242 55-114 (124)
60 PF08140 Cuticle_1: Crustacean 35.7 69 0.0015 19.2 3.2 30 10-46 4-33 (40)
61 PF03928 DUF336: Domain of unk 35.3 63 0.0014 24.4 3.9 44 181-229 1-44 (132)
62 PRK08868 flagellar protein Fla 33.6 2.3E+02 0.005 22.1 6.9 56 185-242 73-132 (144)
63 PF11211 DUF2997: Protein of u 31.2 77 0.0017 19.7 3.1 31 148-178 3-33 (48)
64 COG1754 Uncharacterized C-term 28.7 45 0.00096 29.1 2.2 56 136-194 77-135 (298)
65 PF14804 Jag_N: Jag N-terminus 27.0 1.1E+02 0.0023 19.4 3.2 29 183-218 5-33 (52)
66 PRK07738 flagellar protein Fla 26.6 2.4E+02 0.0053 21.1 5.6 56 185-242 48-107 (117)
67 COG0822 IscU NifU homolog invo 25.2 2.7E+02 0.0059 21.7 6.0 94 149-244 48-145 (150)
68 PF03646 FlaG: FlaG protein; 25.2 1.3E+02 0.0028 21.7 4.0 33 207-241 65-97 (107)
69 PF12112 DUF3579: Protein of u 22.8 36 0.00077 24.4 0.5 30 8-37 32-61 (92)
70 PF05113 DUF693: Protein of un 22.7 2.4E+02 0.0053 24.5 5.5 58 132-192 97-157 (314)
71 PRK14065 exodeoxyribonuclease 22.7 2.2E+02 0.0049 20.0 4.4 30 170-199 33-62 (86)
72 KOG0330 ATP-dependent RNA heli 22.0 1E+02 0.0022 28.4 3.3 124 70-197 100-233 (476)
73 PF04312 DUF460: Protein of un 21.4 3.1E+02 0.0068 21.2 5.4 27 133-159 31-57 (138)
74 TIGR02261 benz_CoA_red_D benzo 21.1 1.1E+02 0.0024 26.4 3.3 49 136-192 104-155 (262)
75 PF07676 PD40: WD40-like Beta 20.7 42 0.00091 19.1 0.5 10 9-18 13-22 (39)
76 PRK11325 scaffold protein; Pro 20.2 2.7E+02 0.0058 20.9 4.9 51 149-199 46-96 (127)
No 1
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.1e-63 Score=425.31 Aligned_cols=247 Identities=59% Similarity=0.932 Sum_probs=234.1
Q ss_pred CCCCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCch
Q 025640 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIM 80 (250)
Q Consensus 1 ~~~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~ 80 (250)
|+++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++++++++.+||++|+++++|+++|..
T Consensus 1 ~~~~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~ 80 (253)
T PTZ00246 1 MSRRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLT 80 (253)
T ss_pred CCCccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcH
Confidence 99999999999999999999999999999999999999999999999999999999988778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecce
Q 025640 81 SDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 160 (250)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~ 160 (250)
+|++.+.+.+|.++..|++.++.+++++.+++.++..+|.|+|+++.|||+|++||+|||++.||+||.+||+|++.+++
T Consensus 81 ~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~ 160 (253)
T PTZ00246 81 ADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWK 160 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecce
Confidence 99999999999999999999999999999999999999999999999999999999999976689999999999999999
Q ss_pred EEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCC-ceeEEECCHHHHHHHHHH
Q 025640 161 AAAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSG-KVKYQVCSPEALSKLLVK 239 (250)
Q Consensus 161 ~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~-~~~~~~~~~~ei~~~~~~ 239 (250)
++|+|.|+.+++++||+.|+++|+++||++++++||+.+.++++.+++.++|++|+++++. ...|++++++||+.++.+
T Consensus 161 ~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~ 240 (253)
T PTZ00246 161 ATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKK 240 (253)
T ss_pred EEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987521 124899999999999999
Q ss_pred hCCCCccc
Q 025640 240 HGVTQPAA 247 (250)
Q Consensus 240 ~~~~~~~~ 247 (250)
+.+....|
T Consensus 241 ~~~~~~~~ 248 (253)
T PTZ00246 241 VTQEYAKE 248 (253)
T ss_pred Hhhhhhhh
Confidence 87665444
No 2
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.8e-60 Score=399.28 Aligned_cols=226 Identities=39% Similarity=0.681 Sum_probs=215.2
Q ss_pred CCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHH
Q 025640 5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDAN 84 (250)
Q Consensus 5 yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 84 (250)
||+.+|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.++++ ..+++.+||++|++|++|+++|..+|++
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l-~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPL-IDESSVHKVEQITPHIGMVYSGMGPDFR 79 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccc-cCCCCcceEEEEcCCEEEEEeEcHHhHH
Confidence 899999999999999999999999999999999999999999999998654 4556789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEE
Q 025640 85 ILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAI 164 (250)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~ 164 (250)
.+.+.++.++..|++.++.+++++.+++.|++.+|.++++++.||++|++||+|||+. ||+||.+||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~-g~~Ly~~d~~G~~~~~~~~a~ 158 (227)
T cd03750 80 VLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPYLYQVDPSGSYFTWKATAI 158 (227)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC-CCEEEEECCCCCEEeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999974 899999999999999999999
Q ss_pred eCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHH
Q 025640 165 GANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 237 (250)
Q Consensus 165 G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~ 237 (250)
|.|+.+++++||++|+++||++||++++++||+.+.+++ .++.+++|++|++++ .++.++++||+.++
T Consensus 159 G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~-l~~~~iev~iv~~~~----~~~~~~~~ei~~~~ 226 (227)
T cd03750 159 GKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQ-MTEKNIEIGICGETK----GFRLLTPAEIKDYL 226 (227)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC----CEEECCHHHHHHHh
Confidence 999999999999999999999999999999999999874 699999999999863 38999999999886
No 3
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=6.4e-59 Score=395.20 Aligned_cols=232 Identities=47% Similarity=0.767 Sum_probs=220.5
Q ss_pred CCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHH
Q 025640 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSD 82 (250)
Q Consensus 3 ~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 82 (250)
.+||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.++++. ..++.+||++|+++++|++||..+|
T Consensus 8 ~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~-~~~~~~KI~~I~~~i~~~~sG~~~D 86 (241)
T PRK03996 8 MGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLI-EPSSIEKIFKIDDHIGAASAGLVAD 86 (241)
T ss_pred cccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCccc-CCCccceEEEEcCCEEEEEcccHHH
Confidence 489999999999999999999999999999999999999999999999986654 4457899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEE
Q 025640 83 ANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAA 162 (250)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~ 162 (250)
++.+.+.++.++..|++.++.+++++.+++.++..+|.|+++++.|||+|++||||||+ .||+||.+||+|++.+++++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~G~~~~~~~~ 165 (241)
T PRK03996 87 ARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYLEYKAT 165 (241)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCCCCeecceEE
Confidence 99999999999999999999999999999999999999999999999999999999997 48999999999999999999
Q ss_pred EEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHh
Q 025640 163 AIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKH 240 (250)
Q Consensus 163 a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~ 240 (250)
|+|.++.+++++|++.|+++|+++||++++++||+.+.++ ..++++++|++|++++. .++.++++||+.+++++
T Consensus 166 a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~---~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 166 AIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETK---KFRKLSVEEIEKYLEKL 239 (241)
T ss_pred EECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCC---cEEECCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999875 77899999999999873 48999999999999875
No 4
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.6e-59 Score=389.84 Aligned_cols=213 Identities=80% Similarity=1.232 Sum_probs=207.3
Q ss_pred CCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHH
Q 025640 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSD 82 (250)
Q Consensus 3 ~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 82 (250)
++||+++|+|||||||+|||||.||+++|+|+|||+++||||||+|+|.++++++.+++.+||++|+++++|++||..+|
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 47999999999999999999999999999999999999999999999999999988878999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEE
Q 025640 83 ANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAA 162 (250)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~ 162 (250)
++.+.+.++.++..|++.++++++++.+++.|+..+|.|++.++.|||+|++||+|||+..||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~ 160 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKAT 160 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999997668999999999999999999
Q ss_pred EEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEE
Q 025640 163 AIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 215 (250)
Q Consensus 163 a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii 215 (250)
|+|+++.+++++||+.|+++|+++||++++++||+.+.+|+...+.+++|++|
T Consensus 161 a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 161 AIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999999999999999999999999999999999999999875
No 5
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-59 Score=371.99 Aligned_cols=247 Identities=66% Similarity=0.996 Sum_probs=238.2
Q ss_pred CCCCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCch
Q 025640 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIM 80 (250)
Q Consensus 1 ~~~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~ 80 (250)
|||+||...|+|||||||+|||||++++++.+|+|||..+||||||++++.+++++..+...+||++|+|+|+|+++|+.
T Consensus 1 msr~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt 80 (249)
T KOG0178|consen 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLT 80 (249)
T ss_pred CCcCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecce
Q 025640 81 SDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 160 (250)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~ 160 (250)
+|+..|++.+|..++.|.+.|++++|.+.|++.+++..|.|||+.|.|||||++|.+|||+..|.+||+.||+|++..|+
T Consensus 81 ~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWk 160 (249)
T KOG0178|consen 81 SDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWK 160 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred EEEEeCChHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 025640 161 AAAIGANNQAAQSILKQDYKDDI-SREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVK 239 (250)
Q Consensus 161 ~~a~G~g~~~~~~~L~~~~~~~~-s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~ 239 (250)
+.|+|.++..+++.|...|+++. +++||+.+|++.|..+.++...+...+|++.++++.+.. .+++++++||..++++
T Consensus 161 a~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~-v~~i~~~~ev~kll~k 239 (249)
T KOG0178|consen 161 ATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKT-VLKILKKDEVLKLLEK 239 (249)
T ss_pred eeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCce-EEEecCHHHHHHHHHH
Confidence 99999999999999999999765 599999999999999999999999999999999998654 5899999999999999
Q ss_pred hCCCCcccc
Q 025640 240 HGVTQPAAE 248 (250)
Q Consensus 240 ~~~~~~~~~ 248 (250)
+.+.+.+++
T Consensus 240 ~~~~~~~~~ 248 (249)
T KOG0178|consen 240 YHETQRQAE 248 (249)
T ss_pred hhhhhhhcc
Confidence 998876654
No 6
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.9e-58 Score=387.23 Aligned_cols=223 Identities=47% Similarity=0.779 Sum_probs=211.8
Q ss_pred CCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHH
Q 025640 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDA 83 (250)
Q Consensus 4 ~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 83 (250)
+||+++|+|||||||+|||||++|+.+|+|+|||+++||||||+|+|.++++ ...++.+||++|+++++|++||..+|+
T Consensus 2 ~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~-~~~~~~~KI~~i~~~i~~~~sG~~~D~ 80 (224)
T TIGR03633 2 GYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKL-VEPSSIEKIFKIDDHIGAATSGLVADA 80 (224)
T ss_pred CCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccc-cCCCccceEEEECCCEEEEEeecHHhH
Confidence 6999999999999999999999999999999999999999999999998654 444688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEE
Q 025640 84 NILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAA 163 (250)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a 163 (250)
+.+.+.++.++..|++.++.+++++.+++.|++.+|.|+++++.|||+|++||||+|+ ++|+||.+||.|++.+++++|
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a 159 (224)
T TIGR03633 81 RVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATA 159 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEE
Confidence 9999999999999999999999999999999999999999999999999999999996 589999999999999999999
Q ss_pred EeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHH
Q 025640 164 IGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEA 232 (250)
Q Consensus 164 ~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~e 232 (250)
+|.++.+++++|++.|+++|+++||++++++||+.+.+ ++.+++.++|++|++++. .|+.++++|
T Consensus 160 ~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~---~~~~~~~~~ 224 (224)
T TIGR03633 160 IGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDK---KFRKLSVEE 224 (224)
T ss_pred ECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCC---cEEECCCCC
Confidence 99999999999999999999999999999999999998 889999999999999873 378888764
No 7
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.4e-58 Score=381.50 Aligned_cols=211 Identities=41% Similarity=0.644 Sum_probs=202.0
Q ss_pred CCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHH
Q 025640 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSD 82 (250)
Q Consensus 3 ~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 82 (250)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++.+... ++.+||++|+++++|+++|..+|
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~-~~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEP-GSNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCc-chhcceeEecCcEEEEEEEChHh
Confidence 58999999999999999999999999999999999999999999999998766654 47899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEE
Q 025640 83 ANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAA 162 (250)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~ 162 (250)
++.+.+.+|.++..|++.++.+++++.+++.|++.+|.|+++++.|||+|++||+|||+. ||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~-gp~Ly~~D~~Gs~~~~~~~ 159 (212)
T cd03751 81 GRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSD-GPQLYMIEPSGVSYGYFGC 159 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCC-cCEEEEECCCCCEEeeEEE
Confidence 999999999999999999999999999999999999999999999999999999999974 8999999999999999999
Q ss_pred EEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEE
Q 025640 163 AIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 215 (250)
Q Consensus 163 a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii 215 (250)
|+|+|+.+++++||+.|+++||++||+++++++|+.+.+.......+|||+++
T Consensus 160 a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 160 AIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 99999999999999999999999999999999999999877788899999874
No 8
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-58 Score=361.71 Aligned_cols=229 Identities=42% Similarity=0.711 Sum_probs=217.5
Q ss_pred CCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHH
Q 025640 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDA 83 (250)
Q Consensus 4 ~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 83 (250)
.||+.+++|||||||||||||.+|++.|+|.|||+.++|||||+++|.++.++.++ +..||++|++||+|++||+.+|+
T Consensus 7 eydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~-sveKi~eid~HIgca~SGl~aDa 85 (241)
T KOG0176|consen 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPS-SVEKIVEIDDHIGCAMSGLIADA 85 (241)
T ss_pred HhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCch-hhhhheehhhceeeeccccccch
Confidence 79999999999999999999999999999999999999999999999999999987 78999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcccc-----CCCcceeEEEEEEEEeCCCCeEEEEECCCCceec
Q 025640 84 NILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQF-----GGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGG 158 (250)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~-----~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~ 158 (250)
+.+++.+|.++++|.+.||++++++.+.+.+|++...|... .-.|||||++|+||+|+ .||+||+.||+|+|..
T Consensus 86 rTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf~~ 164 (241)
T KOG0176|consen 86 RTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTFIR 164 (241)
T ss_pred HHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCceEE
Confidence 99999999999999999999999999999999987666543 23599999999999997 5999999999999999
Q ss_pred ceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHH
Q 025640 159 WKAAAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLV 238 (250)
Q Consensus 159 ~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~ 238 (250)
|++-|||+|++.+++.|++.|.++|+++||+.+++..|+.+++ +..+.+++++.+|++++ .|++++++|++.++.
T Consensus 165 ~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMe-eKl~~~Nvev~~vt~e~----~f~~~t~EE~~~~i~ 239 (241)
T KOG0176|consen 165 YKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVME-EKLNSNNVEVAVVTPEG----EFHIYTPEEVEQVIK 239 (241)
T ss_pred ecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH-HhcCccceEEEEEcccC----ceEecCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998 78899999999999986 489999999999876
Q ss_pred H
Q 025640 239 K 239 (250)
Q Consensus 239 ~ 239 (250)
+
T Consensus 240 ~ 240 (241)
T KOG0176|consen 240 R 240 (241)
T ss_pred c
Confidence 5
No 9
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.1e-57 Score=376.63 Aligned_cols=207 Identities=42% Similarity=0.725 Sum_probs=198.2
Q ss_pred CCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHH
Q 025640 5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDAN 84 (250)
Q Consensus 5 yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 84 (250)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+..+.. ++..+||++|+++++|++||+.+|++
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~-~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQD-PRTVRKICMLDDHVCLAFAGLTADAR 79 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccC-CCccCcEEEECCCEEEEEecchhhHH
Confidence 89999999999999999999999999999999999999999999998776544 45789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEE
Q 025640 85 ILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAI 164 (250)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~ 164 (250)
.+.+.++.++..|++.++++++++.+++.++..+|.|+++++.|||+|++||+|||++++|+||.+||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~ 159 (207)
T cd03755 80 VLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAI 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999867899999999999999999999
Q ss_pred eCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEE
Q 025640 165 GANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 215 (250)
Q Consensus 165 G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii 215 (250)
|.|+.+++++||+.|+++|+++||++++++||+.+.+ .++.++||+++
T Consensus 160 G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 160 GRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 9999999999999999999999999999999999997 68889999875
No 10
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.9e-57 Score=375.03 Aligned_cols=208 Identities=40% Similarity=0.682 Sum_probs=199.4
Q ss_pred CCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHH
Q 025640 5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDAN 84 (250)
Q Consensus 5 yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 84 (250)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++. ++.+||++|+++++|++||+.+|++
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~---~~~~KI~~I~~~i~~~~sG~~~D~~ 77 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELS---SYQKKIFKVDDHIGIAIAGLTADAR 77 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccC---CccccEEEeCCCEEEEEEeChHhHH
Confidence 8999999999999999999999999999999999999999999999887742 3669999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEE
Q 025640 85 ILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAI 164 (250)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~ 164 (250)
.+.+.++.++..|++.++++++++.+++.++..+|.++++.+.|||+|++||+|||+. ||+||++||+|++.+++++|+
T Consensus 78 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~-gp~Ly~~Dp~G~~~~~~~~a~ 156 (211)
T cd03749 78 VLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDES-GPHLFQTCPSGNYFEYKATSI 156 (211)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCC-CCeEEEECCCcCEeeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999974 899999999999999999999
Q ss_pred eCChHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHhhcCCC-CCCCcEEEEEEE
Q 025640 165 GANNQAAQSILKQDYK--DDISREEAVQLALKVLSKTMDSTS-LTSDKLELAEVF 216 (250)
Q Consensus 165 G~g~~~~~~~L~~~~~--~~~s~~ea~~l~~~~l~~~~~~~~-~~~~~iei~ii~ 216 (250)
|.++.+++++||++|+ ++|+++||+++++++|+.+.+++. .++.+|||++|+
T Consensus 157 G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 157 GARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 9999999999999998 699999999999999999998877 999999999983
No 11
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-56 Score=376.30 Aligned_cols=234 Identities=44% Similarity=0.692 Sum_probs=224.0
Q ss_pred CCCCCCccccCCCCcccccchHHHHhcCC-ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchH
Q 025640 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNA-GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMS 81 (250)
Q Consensus 3 ~~yd~~~~~f~p~G~l~qveya~~a~~~g-~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~ 81 (250)
.+||+.+++|+|+|+++|+|||.+++.+| +|+|||+++||||||+|+|.++++++.+++.+|||+|+|||+|+++|+.+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 37999999999999999999999999987 99999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceE
Q 025640 82 DANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKA 161 (250)
Q Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~ 161 (250)
|++.+++.++.++..|++.++++++++.+++.+++.+|.++++ .|||++++||||+|+ ++|+||++||+|++.++++
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~ 157 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKA 157 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcC-CCCeEEEECCCCceeecCE
Confidence 9999999999999999999999999999999999999999987 899999999999999 7899999999999999999
Q ss_pred EEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhC
Q 025640 162 AAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHG 241 (250)
Q Consensus 162 ~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~ 241 (250)
+|+|+|+.+++++||+.|+++|++|||++++++||+.+++|+..++++++|++++++. .++.++.++++.++..+.
T Consensus 158 ~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~----~~~~~~~~~~~~~~~~~~ 233 (236)
T COG0638 158 TAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDE----GFRKLDGEEIKKLLDDLS 233 (236)
T ss_pred EEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCC----CeEEcCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999899999999999853 289999999999988766
Q ss_pred CC
Q 025640 242 VT 243 (250)
Q Consensus 242 ~~ 243 (250)
+.
T Consensus 234 ~~ 235 (236)
T COG0638 234 EK 235 (236)
T ss_pred hc
Confidence 43
No 12
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-56 Score=373.19 Aligned_cols=210 Identities=51% Similarity=0.831 Sum_probs=201.0
Q ss_pred CCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHH
Q 025640 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDA 83 (250)
Q Consensus 4 ~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 83 (250)
+||+++|+|||||||+|+|||.||+++|+|+|||+++||||||+|++.+.++.. .++.+||++|+++++|++||..+|+
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~-~~~~~KI~~I~~~i~~~~sG~~~D~ 79 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVE-PESIEKIYKIDDHVGAATSGLVADA 79 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccC-CCccceEEEEcCCEEEEEecCHHHH
Confidence 699999999999999999999999999999999999999999999999865544 5688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEE
Q 025640 84 NILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAA 163 (250)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a 163 (250)
+.+.+.++.++..|++.++.+++++.+++.|+..++.++++++.|||++++||+|||+ .+|+||.+||.|++.++++++
T Consensus 80 ~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a 158 (211)
T cd03756 80 RVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATA 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999997 489999999999999999999
Q ss_pred EeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEE
Q 025640 164 IGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVF 216 (250)
Q Consensus 164 ~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~ 216 (250)
+|+++++++++|++.|+++|+++||++++++||+.+.+++ ..+++++|++|+
T Consensus 159 ~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~-~~~~~~~v~ii~ 210 (211)
T cd03756 159 IGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEEN-ETPENVEIAYVT 210 (211)
T ss_pred ECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEe
Confidence 9999999999999999999999999999999999998865 599999999986
No 13
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-56 Score=374.00 Aligned_cols=210 Identities=38% Similarity=0.685 Sum_probs=199.4
Q ss_pred CCCCCccccCCCCcccccchHHHHhcC-CccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHH
Q 025640 4 RYDSRTTIFSPEGRLYQVEYAMEAIGN-AGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSD 82 (250)
Q Consensus 4 ~yd~~~~~f~p~G~l~qveya~~a~~~-g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 82 (250)
+||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|+|.+.++...+ +.+||++|+++++|++||+.+|
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~-~~~Ki~~I~~~i~~~~sG~~~D 79 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPS-TVTHLFRITDEIGCVMTGMIAD 79 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCc-ccCceEEEcCCEEEEEEechhh
Confidence 699999999999999999999999975 77999999999999999999988776654 7889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEE
Q 025640 83 ANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAA 162 (250)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~ 162 (250)
++.+.+++|.++..|++.++++++++.+|+.+++++|.|+++++.|||++++||+|||++.||+||.+||+|++.+++++
T Consensus 80 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~ 159 (215)
T cd03754 80 SRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKAT 159 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999997668999999999999999999
Q ss_pred EEeCChHHHHHHHHhhCCCC--C--CHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEE
Q 025640 163 AIGANNQAAQSILKQDYKDD--I--SREEAVQLALKVLSKTMDSTSLTSDKLELAEV 215 (250)
Q Consensus 163 a~G~g~~~~~~~L~~~~~~~--~--s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii 215 (250)
|+|.|+.+++++||+.|+++ | |.+||++++++||..+.+|+. .++.+||++|
T Consensus 160 a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~-~~~~~ei~~~ 215 (215)
T cd03754 160 AAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDF-KATEIEVGVV 215 (215)
T ss_pred EECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEC
Confidence 99999999999999999985 7 999999999999999998774 5999999875
No 14
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=4.3e-56 Score=370.37 Aligned_cols=209 Identities=56% Similarity=0.929 Sum_probs=201.8
Q ss_pred CCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHH
Q 025640 5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDAN 84 (250)
Q Consensus 5 yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 84 (250)
||+++|+|||||||+|+|||.+++.+|+|+|||+++||||||+|++.+.++. ..++.+||++|+++++|+++|..+|++
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~-~~~~~~KI~~i~~~i~~~~sG~~~D~~ 79 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLL-DPSSVEKIFKIDDHIGCAVAGLTADAR 79 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCcccc-CCcccceEEEecCCeEEEeccCcHhHH
Confidence 8999999999999999999999999999999999999999999999998755 446889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEE
Q 025640 85 ILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAI 164 (250)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~ 164 (250)
.+.+.++..+..|++.++.+++++.+++.+++.++.|+++++.||++|++||+|||++.+|+||.+||.|++.+++++++
T Consensus 80 ~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~ 159 (209)
T cd01911 80 VLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAI 159 (209)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999877899999999999999999999
Q ss_pred eCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEE
Q 025640 165 GANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 215 (250)
Q Consensus 165 G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii 215 (250)
|.++.+++++|++.|+++|+++||++++.+||+.+.+|+. +++.++|+++
T Consensus 160 G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 160 GKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred CCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 9999999999999999999999999999999999999998 9999999875
No 15
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-55 Score=352.97 Aligned_cols=243 Identities=37% Similarity=0.573 Sum_probs=226.8
Q ss_pred CC---CCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEe
Q 025640 1 MS---RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVA 77 (250)
Q Consensus 1 ~~---~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~s 77 (250)
|| .+||++.++||||||+||||||.||+.||+|||||+|+|||||++++..+++++.+. ...||+.|++||+|+++
T Consensus 1 MSsIGtGyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~-sn~ri~~V~r~iG~ava 79 (254)
T KOG0184|consen 1 MSSIGTGYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPG-SNERIFSVDRHIGMAVA 79 (254)
T ss_pred CCcccccccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccC-CCCceEeecccccEEEe
Confidence 88 799999999999999999999999999999999999999999999999999999987 56899999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCcee
Q 025640 78 GIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYG 157 (250)
Q Consensus 78 G~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~ 157 (250)
|+.+|.+.+...+|.++..|+.+|+.++|...++..++++.|.||.++..|||||+.++++||+ .||+||+++|+|.++
T Consensus 80 Gl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~ 158 (254)
T KOG0184|consen 80 GLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSY 158 (254)
T ss_pred ccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999996 599999999999999
Q ss_pred cceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHH
Q 025640 158 GWKAAAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 237 (250)
Q Consensus 158 ~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~ 237 (250)
.++++|+|.|.+.+++.||+.--.+|+.+|+++-+-+.+..+.+........+||.++..+.++ .+..-|.||.+..
T Consensus 159 ~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG---~h~~vp~el~~ea 235 (254)
T KOG0184|consen 159 GYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNG---LHEKVPSELLEEA 235 (254)
T ss_pred ceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCC---ccccCcHHHHHHH
Confidence 9999999999999999999998899999999999999999999998999999999999987765 3555556888777
Q ss_pred HHhCCCCcccc
Q 025640 238 VKHGVTQPAAE 248 (250)
Q Consensus 238 ~~~~~~~~~~~ 248 (250)
.++.+...+|.
T Consensus 236 ~~~a~~s~~~~ 246 (254)
T KOG0184|consen 236 EKYAKASLDEE 246 (254)
T ss_pred HHHHHhhhccc
Confidence 77665544443
No 16
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-54 Score=362.97 Aligned_cols=208 Identities=47% Similarity=0.764 Sum_probs=196.5
Q ss_pred CCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHH
Q 025640 5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDAN 84 (250)
Q Consensus 5 yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 84 (250)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.. .++.+||++|+++++|+++|+.+|++
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~-~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLME-PSSVEKIMEIDDHIGCAMSGLIADAR 79 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcC-CCccceEEEEcCCEEEEEecCHHHHH
Confidence 89999999999999999999999999999999999999999999999877654 45789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccC-----CCcceeEEEEEEEEeCCCCeEEEEECCCCceecc
Q 025640 85 ILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFG-----GLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW 159 (250)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~-----~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~ 159 (250)
.+.+.++.++..|++.++++++++.+++.|+..++.|+++. ..|||+|++||+|||+ .||+||.+||.|++.++
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~ 158 (213)
T cd03753 80 TLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRC 158 (213)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecc
Confidence 99999999999999999999999999999999999888743 4699999999999997 48999999999999999
Q ss_pred eEEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEE
Q 025640 160 KAAAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 215 (250)
Q Consensus 160 ~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii 215 (250)
+++|+|.++++++++|+++|+++|+++||++++++||+.+.++ ..++.+++|++|
T Consensus 159 ~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~-~~~~~~~ei~~~ 213 (213)
T cd03753 159 DAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEE-KLNSTNVELATV 213 (213)
T ss_pred cEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEC
Confidence 9999999999999999999999999999999999999998874 588899999975
No 17
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-55 Score=347.54 Aligned_cols=234 Identities=35% Similarity=0.600 Sum_probs=221.7
Q ss_pred CCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHH
Q 025640 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSD 82 (250)
Q Consensus 3 ~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 82 (250)
.+||+.+|+|||||+|||||||++|+.+|+++||++++++|||+.+++....+... +...||..+++|++|+++|+.+|
T Consensus 2 srydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~-r~~rkI~~ld~hV~mafaGl~aD 80 (249)
T KOG0183|consen 2 SRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDE-RTVRKISMLDDHVVMAFAGLTAD 80 (249)
T ss_pred CccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhh-hhhhhheeecceeeEEecCCCcc
Confidence 47999999999999999999999999999999999999999999999988777774 46899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEE
Q 025640 83 ANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAA 162 (250)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~ 162 (250)
++.+++.+|-+|+.|+++...+++++.+.++|+.+.|.|||..+.||||+++||+|+|+++.|.||.+||+|.|.+|++-
T Consensus 81 ArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~ 160 (249)
T KOG0183|consen 81 ARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKAN 160 (249)
T ss_pred ceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred EEeCChHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHh
Q 025640 163 AIGANNQAAQSILKQDYKDD--ISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKH 240 (250)
Q Consensus 163 a~G~g~~~~~~~L~~~~~~~--~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~ 240 (250)
|+|.++..+..+||++|.+. .+..++++|+.++|..+.. ..+.+|+++++.+.+ .++.++.++|+.++..+
T Consensus 161 aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvq---s~~~nie~aVm~~~~----~~~~l~~~~I~~~v~~i 233 (249)
T KOG0183|consen 161 AIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQ---SGGKNIEVAVMKRRK----DLKMLESEEIDDIVKEI 233 (249)
T ss_pred ccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhh---cCCCeeEEEEEecCC----ceeecCHHHHHHHHHHH
Confidence 99999999999999999866 7889999999999999986 457899999999876 38999999999999998
Q ss_pred CCCC
Q 025640 241 GVTQ 244 (250)
Q Consensus 241 ~~~~ 244 (250)
+...
T Consensus 234 e~E~ 237 (249)
T KOG0183|consen 234 EQEE 237 (249)
T ss_pred HHHH
Confidence 8763
No 18
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-53 Score=332.49 Aligned_cols=232 Identities=37% Similarity=0.647 Sum_probs=221.0
Q ss_pred CCCCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCch
Q 025640 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIM 80 (250)
Q Consensus 1 ~~~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~ 80 (250)
|..+|..++|+|||+|+|-|+|||+.|+.+|.+.|||+-.||||||++++..+.+.+. .+..|++.|.++|+|.+||+.
T Consensus 2 ~d~~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~-~sv~KV~~i~~~IG~vYSGmg 80 (233)
T KOG0181|consen 2 GDFGYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDE-ESVRKVEKITPHIGCVYSGMG 80 (233)
T ss_pred CCcccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchh-hhhhhHhhccCCcceEEecCC
Confidence 3459999999999999999999999999999999999999999999999888888775 478999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecce
Q 025640 81 SDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 160 (250)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~ 160 (250)
+|++.+++..|..++.|...|++++++..|+..++..+|+|||..+.||||++++++|||+. +|.||++||+|+++.|+
T Consensus 81 pD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~-~p~LyQvdPSGsyf~wk 159 (233)
T KOG0181|consen 81 PDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPLLYQVDPSGSYFAWK 159 (233)
T ss_pred CceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCC-ceeEEEECCccceeehh
Confidence 99999999999999999999999999999999999999999999999999999999999985 89999999999999999
Q ss_pred EEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHh
Q 025640 161 AAAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKH 240 (250)
Q Consensus 161 ~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~ 240 (250)
++|+|.+...++.+||++|+++|.+++++..|+..|++..+ ...+.++|||+++..++ |+++.+.||+++++.+
T Consensus 160 atA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fe-ge~~~~nieigv~~~~~-----F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 160 ATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFE-GEMTAKNIEIGVCGENG-----FRRLTPAEIEDYLASL 233 (233)
T ss_pred hhhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhc-cccccCceEEEEecCCc-----eeecCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999997 56889999999998665 9999999999998753
No 19
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-51 Score=325.82 Aligned_cols=236 Identities=35% Similarity=0.615 Sum_probs=222.9
Q ss_pred CCCCCCccccCCCCcccccchHHHHhcC-CccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchH
Q 025640 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGN-AGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMS 81 (250)
Q Consensus 3 ~~yd~~~~~f~p~G~l~qveya~~a~~~-g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~ 81 (250)
.+||+++|+|||||||+|||||.||+++ |=|+||++++|++|+++.++.+.++...+ ....+|+|+.+|+|+.+|..+
T Consensus 7 agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~-tvt~~f~itk~ig~v~tG~~a 85 (246)
T KOG0182|consen 7 AGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSS-TVTHLFRITKKIGCVITGMIA 85 (246)
T ss_pred CCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccc-cceeEEEeeccceEEEecCCc
Confidence 4899999999999999999999999999 55999999999999999999999998865 678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceE
Q 025640 82 DANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKA 161 (250)
Q Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~ 161 (250)
|++..+.++|.++.++++.||.+||++.||+.++++.|.|+|+..+||+||.+++.|+|++.||.+|.+||.|-+..+++
T Consensus 86 Dar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kA 165 (246)
T KOG0182|consen 86 DARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKA 165 (246)
T ss_pred chHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCChHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 025640 162 AAIGANNQAAQSILKQDYKDD--ISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVK 239 (250)
Q Consensus 162 ~a~G~g~~~~~~~L~~~~~~~--~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~ 239 (250)
++.|.....+.++||++|+++ .+.+|+++++..||..+.. -+.....+||++++++. .+|+.|+.+||+..|..
T Consensus 166 taaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~-~Dfk~se~EVgvv~~~~---p~f~~Ls~~eie~hL~~ 241 (246)
T KOG0182|consen 166 TAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLG-IDFKSSELEVGVVTVDN---PEFRILSAEEIEEHLQA 241 (246)
T ss_pred eecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHh-cccCCcceEEEEEEcCC---cceeeccHHHHHHHHHH
Confidence 999999999999999999977 7799999999999999987 34677899999999886 24999999999999988
Q ss_pred hCCC
Q 025640 240 HGVT 243 (250)
Q Consensus 240 ~~~~ 243 (250)
+.+.
T Consensus 242 IAEk 245 (246)
T KOG0182|consen 242 IAEK 245 (246)
T ss_pred hhhc
Confidence 7653
No 20
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-48 Score=314.56 Aligned_cols=232 Identities=35% Similarity=0.558 Sum_probs=218.3
Q ss_pred CCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHH
Q 025640 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSD 82 (250)
Q Consensus 3 ~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 82 (250)
++||...|+|||+|||+|||||++|++.|++.||++.++..||++-+|..+-+ +..++|||+|++|+++.++|+++|
T Consensus 4 nqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seL---ss~QkKi~~iD~h~g~siAGLt~D 80 (264)
T KOG0863|consen 4 NQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSEL---SSHQKKIFKIDDHIGISIAGLTAD 80 (264)
T ss_pred ccccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHH---HHhhheeEecccccceEEeccCcc
Confidence 48999999999999999999999999999999999999999999999876655 347899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEE
Q 025640 83 ANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAA 162 (250)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~ 162 (250)
++.|.+++|.++..+++.+++++++..|+..|++..|..||+.+.|||||.++++|+|+. ||+||.++|+|++.+++..
T Consensus 81 arvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~-G~hl~e~~Psg~v~e~~g~ 159 (264)
T KOG0863|consen 81 ARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDES-GPHLYEFCPSGNVFECKGM 159 (264)
T ss_pred hHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCC-CceeEEEcCCccEEEEeee
Confidence 999999999999999999999999999999999999999999999999999999999984 9999999999999999999
Q ss_pred EEeCChHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHhhcC-CCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 025640 163 AIGANNQAAQSILKQDYK--DDISREEAVQLALKVLSKTMDS-TSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVK 239 (250)
Q Consensus 163 a~G~g~~~~~~~L~~~~~--~~~s~~ea~~l~~~~l~~~~~~-~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~ 239 (250)
+||+.++.+.++||++.. ++++.||.+..++.||+.+... +..++.++.|+|+.+|. +|..++.+++..++..
T Consensus 160 sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~----pf~~~d~~~~~k~~~~ 235 (264)
T KOG0863|consen 160 SIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDE----PFTILDQKDVAKYVDL 235 (264)
T ss_pred ecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCC----ceEeecHHHHHHHHHH
Confidence 999999999999999875 7999999999999999999864 47899999999999997 6999999999987766
Q ss_pred hCC
Q 025640 240 HGV 242 (250)
Q Consensus 240 ~~~ 242 (250)
.++
T Consensus 236 ~~~ 238 (264)
T KOG0863|consen 236 FKK 238 (264)
T ss_pred hhc
Confidence 553
No 21
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=9.2e-46 Score=310.01 Aligned_cols=209 Identities=20% Similarity=0.292 Sum_probs=193.2
Q ss_pred CCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 025640 30 NAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQ 109 (250)
Q Consensus 30 ~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 109 (250)
+|+|+|||+++||||||+|+|.++|.+..+++.+||++|+++++|+++|..+|++.+.+++|.++..|++.++.+++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 48999999999999999999999987777778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCcceeEEEEEEEEeCC-CCeEEEEECCCC-ceecceEEEEeCChHHHHHHHHhhCCCCCCHHH
Q 025640 110 LVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKN-YGFQLYMSDPSG-NYGGWKAAAIGANNQAAQSILKQDYKDDISREE 187 (250)
Q Consensus 110 la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~-~~~~Ly~vd~~G-~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~e 187 (250)
+++.|++++|.++ ...+|||++++||||||+. ++|+||.+||+| ++..++++|+|+|+.+++++||+.|+++||.+|
T Consensus 81 la~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~ee 159 (219)
T TIGR03690 81 KANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDD 159 (219)
T ss_pred HHHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHH
Confidence 9999999998876 4458999999999999964 579999999999 577889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCc-------EEEEEEEeCCCCceeEEECCHHHHHHHHHHhCCCC
Q 025640 188 AVQLALKVLSKTMDSTSLTSDK-------LELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQ 244 (250)
Q Consensus 188 a~~l~~~~l~~~~~~~~~~~~~-------iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~~~~ 244 (250)
|++++++||..+.+++..+++. ++|++|++++ |+.++++||+.++.++.+.+
T Consensus 160 ai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g-----~~~l~~~ei~~~~~~~~~~~ 218 (219)
T TIGR03690 160 ALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG-----ARRVPESELEELARAIVESR 218 (219)
T ss_pred HHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc-----eEEcCHHHHHHHHHHHHhcc
Confidence 9999999999999998866664 3999998776 89999999999998877654
No 22
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=2e-45 Score=312.17 Aligned_cols=209 Identities=18% Similarity=0.236 Sum_probs=195.4
Q ss_pred HhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 025640 27 AIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMP 106 (250)
Q Consensus 27 a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 106 (250)
.+.+|+|+|||+++||||||+|+|.+++.++..++.+||++|+++++++++|..+|++.+.+.+|.++..|++.++.+++
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45789999999999999999999999888877778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHH
Q 025640 107 VEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISRE 186 (250)
Q Consensus 107 ~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ 186 (250)
++.+++.|++++|.++ ..|+.+++||||||+ .||+||++||+|++.+++++|+|.|+.+++++||+.|+++||.+
T Consensus 115 v~~la~~ls~~l~~~R----~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~e 189 (247)
T PTZ00488 115 VAAASKILANIVWNYK----GMGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDE 189 (247)
T ss_pred HHHHHHHHHHHHHhcC----CCCeeEEEEEEEEeC-CCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHH
Confidence 9999999999998762 235556689999997 47999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhCCCCc
Q 025640 187 EAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQP 245 (250)
Q Consensus 187 ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~ 245 (250)
||++++++||+.+.+|+..++++++|++|+++| ++.++++||+.++.++++.++
T Consensus 190 Eai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g-----~~~l~~~ei~~~l~~~~~~~~ 243 (247)
T PTZ00488 190 EAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG-----WKKISADDCFDLHQKYAAEKE 243 (247)
T ss_pred HHHHHHHHHHHHHHHhccccCCCeEEEEEcCCc-----cEECCHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999887 899999999999999886654
No 23
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=2.2e-45 Score=308.48 Aligned_cols=207 Identities=22% Similarity=0.277 Sum_probs=187.5
Q ss_pred cchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHH
Q 025640 21 VEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYA 100 (250)
Q Consensus 21 veya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 100 (250)
-|||++|+++|+|+|||+++||||||+|++. ++.+||++|+||++|+++|+.+|++.+++.++.++..+++.
T Consensus 17 ~EYA~kav~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~ 88 (228)
T TIGR03691 17 AELARKGIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYS 88 (228)
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhh
Confidence 4999999999999999999999999999962 35789999999999999999999999999999999999999
Q ss_pred hC-CCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeC-CCCeEEEEECCCCceecce-EEEEeCChHHHHHHHHh
Q 025640 101 YQ-EPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK-NYGFQLYMSDPSGNYGGWK-AAAIGANNQAAQSILKQ 177 (250)
Q Consensus 101 ~~-~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~-~~~~~Ly~vd~~G~~~~~~-~~a~G~g~~~~~~~L~~ 177 (250)
++ .+++++.+++.+++.+..++ +++.|||+|++|++|||+ +.||+||.+||+|++.+++ ++|+|.+++.++++||+
T Consensus 89 ~~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek 167 (228)
T TIGR03691 89 YDRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKE 167 (228)
T ss_pred cCCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHH
Confidence 98 68999999988887776666 567899999999999986 4589999999999999876 89999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHHhh--cCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHH
Q 025640 178 DYKDDISREEAVQLALKVLSKTM--DSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 237 (250)
Q Consensus 178 ~~~~~~s~~ea~~l~~~~l~~~~--~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~ 237 (250)
+|+++||++||++++++||+.+. +++..++.++||++|++++. ...|++|+++||+.++
T Consensus 168 ~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~-~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 168 SYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRP-RRAFRRITGEALERLL 228 (228)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCC-ccceEECCHHHHHhhC
Confidence 99999999999999999999994 56679999999999997541 2359999999998764
No 24
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-45 Score=302.68 Aligned_cols=186 Identities=24% Similarity=0.263 Sum_probs=178.4
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.+++.+..+++.+|||+|+++++|+++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998877777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
+.+++.+|.+++. + |||++++||+|||++.+|+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||+++
T Consensus 82 ~~l~~~~~~~~~~-~-rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l 159 (193)
T cd03758 82 NFTRRELAESLRS-R-TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALEL 159 (193)
T ss_pred HHHHHHHHHHhhc-C-CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999887654 3 8999999999999766899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 192 ALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
+.+||+.+.+|++.++++++|++|+++|
T Consensus 160 ~~~a~~~~~~rd~~~~~~i~i~ii~~~g 187 (193)
T cd03758 160 MKKCIKELKKRFIINLPNFTVKVVDKDG 187 (193)
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCCC
Confidence 9999999999999999999999999887
No 25
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-45 Score=301.99 Aligned_cols=187 Identities=16% Similarity=0.194 Sum_probs=177.7
Q ss_pred cCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 025640 29 GNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVE 108 (250)
Q Consensus 29 ~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 108 (250)
.+|+|+|||+++||||||+|++.++++++.+++.+|||+|++|++|+++|..+|++.+.+.+|.++..|++.++.+++++
T Consensus 1 ~~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~ 80 (195)
T cd03759 1 YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK 80 (195)
T ss_pred CCCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 37999999999999999999999999988777789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecce-EEEEeCChHHHHHHHHhhCCCCCCHHH
Q 025640 109 QLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK-AAAIGANNQAAQSILKQDYKDDISREE 187 (250)
Q Consensus 109 ~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~-~~a~G~g~~~~~~~L~~~~~~~~s~~e 187 (250)
.+++.|++.++. + +.+||+|++||||||++++|+||++||+|++..++ ++|+|.|+++++++||+.|+++||.+|
T Consensus 81 ~la~~l~~~ly~--~--r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 156 (195)
T cd03759 81 TFSSLISSLLYE--K--RFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDE 156 (195)
T ss_pred HHHHHHHHHHHH--h--cCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHH
Confidence 999999998854 3 25899999999999977789999999999998877 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 188 AVQLALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 188 a~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
|++++++||+.+.+|++.++++++|++|+++|
T Consensus 157 a~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g 188 (195)
T cd03759 157 LFETISQALLSAVDRDALSGWGAVVYIITKDK 188 (195)
T ss_pred HHHHHHHHHHHHHhhCcccCCceEEEEEcCCc
Confidence 99999999999999999999999999999887
No 26
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.6e-45 Score=300.40 Aligned_cols=188 Identities=18% Similarity=0.181 Sum_probs=177.7
Q ss_pred CCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHH-HHHHHhCCCCCHH
Q 025640 30 NAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQ-RYTYAYQEPMPVE 108 (250)
Q Consensus 30 ~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 108 (250)
.|+|+|||+++||||||+|+|.+++.+..+++.+|||+|+++++|+++|..+|++.+.+++|.++. .+++.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 489999999999999999999997777777788999999999999999999999999999999986 5667899999999
Q ss_pred HHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCC--CCCHH
Q 025640 109 QLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKD--DISRE 186 (250)
Q Consensus 109 ~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~--~~s~~ 186 (250)
.++++|++.+ |++++++|||+|++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|++ +||++
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 9999999985 5777789999999999999976689999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 187 EAVQLALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 187 ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
||++++.+||+.+.+|+..++++++|++|+++|
T Consensus 159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g 191 (197)
T cd03760 159 EARALIEECMKVLYYRDARSINKYQIAVVTKEG 191 (197)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEEECCCC
Confidence 999999999999999999999999999999987
No 27
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-44 Score=295.97 Aligned_cols=183 Identities=20% Similarity=0.291 Sum_probs=176.5
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.+++.++.+++.+|||+|++|++|+++|..+|++.+.+.+|.++..|++.++.+++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998888777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
+.+++++|.+++ .||++++||||||+ .||+||++||+|++.+++++|+|.|+.+++++||+.|+++||.+||+++
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 155 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDL 155 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 999999998864 58999999999997 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 192 ALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
+.+||+.+.+|+..++++++|++|+++|
T Consensus 156 ~~~~l~~~~~rd~~sg~~~~v~ii~~~g 183 (188)
T cd03761 156 ARRAIYHATHRDAYSGGNVNLYHVREDG 183 (188)
T ss_pred HHHHHHHHHHhcccCCCCeEEEEEcCCc
Confidence 9999999999999999999999999887
No 28
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=4.9e-44 Score=292.42 Aligned_cols=184 Identities=28% Similarity=0.472 Sum_probs=177.3
Q ss_pred CccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 025640 31 AGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQL 110 (250)
Q Consensus 31 g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 110 (250)
|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+++++|+++|..+|++.+.++++.++..|+..++.+++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999998888877789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHH
Q 025640 111 VQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQ 190 (250)
Q Consensus 111 a~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~ 190 (250)
++.|++.+|.+ ++|||+|++||||||++ ||+||.+||+|++.+++++++|.++.+++++||+.|+++||++||++
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~ 155 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDEE-GPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKK 155 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeCC-CCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHH
Confidence 99999999876 57999999999999975 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 191 LALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 191 l~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
++.+||+.+.+|++.++++++|++|+++|
T Consensus 156 l~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 156 LAVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 99999999999999999999999999876
No 29
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.7e-44 Score=298.33 Aligned_cols=188 Identities=23% Similarity=0.324 Sum_probs=178.9
Q ss_pred hcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 025640 28 IGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPV 107 (250)
Q Consensus 28 ~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 107 (250)
+++|+|+|||+++||||||+|++.++++++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++.++.++++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 57899999999999999999999999998877788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCC-------
Q 025640 108 EQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYK------- 180 (250)
Q Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~------- 180 (250)
+.+++.+++.++.. +.+||++++||||||++++|+||.+||.|++.+++++|+|+|+.+++++||+.|+
T Consensus 85 ~~la~~ls~~ly~~----R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~ 160 (212)
T cd03757 85 EAIAQLLSTILYSR----RFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNV 160 (212)
T ss_pred HHHHHHHHHHHHhh----cCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcC
Confidence 99999999998643 2479999999999997668999999999999999999999999999999999975
Q ss_pred --CCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 181 --DDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 181 --~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
++||++||++++.+||+.+.+|++.++++++|++|+++|
T Consensus 161 ~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g 201 (212)
T cd03757 161 ERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDG 201 (212)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCC
Confidence 899999999999999999999999999999999999987
No 30
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2e-43 Score=289.51 Aligned_cols=187 Identities=28% Similarity=0.476 Sum_probs=178.9
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++++++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998888778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
+.+++.+|.+ ++|||+|++||||||+ ++|+||.+||+|++.+++++|+|+|+++++++|++.|+++|+++||+++
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l 155 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKL 155 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 9999999876 4799999999999998 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEEC
Q 025640 192 ALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVC 228 (250)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~ 228 (250)
+++||+.+.+|++.++++++|++|+++| ++.+
T Consensus 156 ~~~~l~~~~~rd~~~~~~i~i~iv~~~g-----~~~~ 187 (188)
T cd03764 156 AIRAIKSAIERDSASGDGIDVVVITKDG-----YKEL 187 (188)
T ss_pred HHHHHHHHHhhcCCCCCcEEEEEECCCC-----eEeC
Confidence 9999999999999999999999999887 6655
No 31
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-43 Score=297.33 Aligned_cols=199 Identities=19% Similarity=0.180 Sum_probs=178.7
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEec----CceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCC-CCC
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKID----DHVACAVAGIMSDANILINTARVQAQRYTYAYQE-PMP 106 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~ 106 (250)
+-+|||+++||||||+|+|+++++...+ +.+||++|+ +|++|+.||..+|++.+.+.+|.++..|++.++. +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~-~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNIS-TYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCcccc-ccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 3589999999999999999999987766 689999998 8999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHhh-ccccCC-----CcceeEEEEEEEEeCCCCeEEEEECCCCceecc----eEEEEeCChHHHHHHHH
Q 025640 107 VEQLVQSLCDTKQG-YTQFGG-----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW----KAAAIGANNQAAQSILK 176 (250)
Q Consensus 107 ~~~la~~l~~~~~~-~~~~~~-----~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~----~~~a~G~g~~~~~~~L~ 176 (250)
++.+|+.+++.++. +++..+ .|||+|++||||||++.||+||++||+|++.++ +++|+|. +.+++++||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 99999999998544 445443 489999999999997678999999999999998 5689996 689999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHH
Q 025640 177 QDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEA 232 (250)
Q Consensus 177 ~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~e 232 (250)
++|+++||++||++++++||..+.+|+..++++|+|++|+++|-.....++++.++
T Consensus 159 k~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~~~~~ 214 (236)
T cd03765 159 RVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRIEEDD 214 (236)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEecCCC
Confidence 99999999999999999999999999999999999999999985443445665554
No 32
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9e-43 Score=285.68 Aligned_cols=183 Identities=19% Similarity=0.270 Sum_probs=175.7
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.++|.+..+++.+||++|+++++|+++|..+|++.+.+.++.++..|+..++.+++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 58999999999999999999998887777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
+.+++.+|.++ |||++++||||||++.||+||.+||.|++.+++++++|+++.+++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~-----~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l 155 (188)
T cd03762 81 SLFKNLCYNYK-----EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKF 155 (188)
T ss_pred HHHHHHHHhcc-----ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999998763 7899999999999756899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 192 ALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
+++||+.+.+|++.++++++|++|+++|
T Consensus 156 ~~~al~~~~~rd~~~~~~~~i~~i~~~g 183 (188)
T cd03762 156 VKNALSLAMSRDGSSGGVIRLVIITKDG 183 (188)
T ss_pred HHHHHHHHHHhccccCCCEEEEEECCCC
Confidence 9999999999999999999999999887
No 33
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.7e-43 Score=285.97 Aligned_cols=182 Identities=22% Similarity=0.306 Sum_probs=174.6
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.++|.+..+++.+|||+|+++++|+++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999888777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
+.|++.+|.+. .||+|++||||||+. ||+||.+||.|++.+++++|+|.++.+++++|++.|+++||++||+++
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~~-g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l 154 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVDYT-GPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKL 154 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEcCC-CCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 99999998763 399999999999974 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 192 ALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
+++||+.+.+|++.++++++|++|+++|
T Consensus 155 ~~~~l~~~~~rd~~~~~~~~v~ii~~~g 182 (189)
T cd03763 155 VCEAIEAGIFNDLGSGSNVDLCVITKDG 182 (189)
T ss_pred HHHHHHHHHHhcCcCCCceEEEEEcCCc
Confidence 9999999999999999999999999987
No 34
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-42 Score=282.55 Aligned_cols=184 Identities=27% Similarity=0.387 Sum_probs=177.5
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|++.++++....++.+|||+|+++++++++|+.+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999988667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
+.+++.++.+++ |||++++||||||++++|+||.+||.|++.+++++++|.++++++++|++.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~ 156 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVEL 156 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence 999999988765 8999999999999866899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 192 ALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
+++||+.+.++++.++++++|++|+++|
T Consensus 157 ~~~~l~~~~~~d~~~~~~~~v~vi~~~g 184 (189)
T cd01912 157 VKKAIDSAIERDLSSGGGVDVAVITKDG 184 (189)
T ss_pred HHHHHHHHHHhcCccCCcEEEEEECCCC
Confidence 9999999999999999999999999887
No 35
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=1.2e-42 Score=285.03 Aligned_cols=188 Identities=40% Similarity=0.656 Sum_probs=179.8
Q ss_pred hcCCccEEEEEeCCEEEEEEEcccCCCcccccCC-cCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 025640 28 IGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTS-TEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMP 106 (250)
Q Consensus 28 ~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 106 (250)
+++|+|+|||+++||||||+|++.++|....+.+ .+|||+|+++++++++|..+|++.+.++++.++..+++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 4789999999999999999999999887775444 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecc-eEEEEeCChHHHHHHHHhhCCCCCCH
Q 025640 107 VEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW-KAAAIGANNQAAQSILKQDYKDDISR 185 (250)
Q Consensus 107 ~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~-~~~a~G~g~~~~~~~L~~~~~~~~s~ 185 (250)
++.+++.++..++.++++.+.||+++++|++|||++++|+||.+||+|++.++ +++++|+|+++++++|++.|+++|++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~ 160 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSL 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSH
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCH
Confidence 99999999999999999999999999999999998777999999999999999 69999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcEEEEEE
Q 025640 186 EEAVQLALKVLSKTMDSTSLTSDKLELAEV 215 (250)
Q Consensus 186 ~ea~~l~~~~l~~~~~~~~~~~~~iei~ii 215 (250)
+||++++++||+.+.+++..++++++|++|
T Consensus 161 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 161 EEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999999999999999986
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=2.5e-41 Score=275.33 Aligned_cols=182 Identities=47% Similarity=0.727 Sum_probs=175.2
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|++.++++....++.+|||+|+++++|+++|..+|++.+.+.+++++..|++.++.+++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999888667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
+.+++.+|.+++. .||+++++||||||++.+|+||.+||.|++.+++++|+|.++.+++++|++.|+++||.+||+++
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 158 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIEL 158 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHH
Confidence 9999999999876 89999999999999866899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEE
Q 025640 192 ALKVLSKTMDSTSLTSDKLELAEV 215 (250)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~iei~ii 215 (250)
+++||+.+.+++..++.+++|++|
T Consensus 159 ~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 159 ALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999999999999999875
No 37
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-39 Score=251.24 Aligned_cols=186 Identities=21% Similarity=0.223 Sum_probs=180.2
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
.+++||++.|+|++|+|+...++++..+.+.+|++.|+++++|+++|..+|+.++.++++++++.|++.+|.+++|+..|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
+++...+..+.+ ..+||.|++|+||+|++.||.||++|..|+..+.++++.|.++.++.++|++.|+|+||.+||+++
T Consensus 82 hFtR~~La~~LR--sr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~l 159 (200)
T KOG0177|consen 82 HFTRRELAESLR--SRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDL 159 (200)
T ss_pred HHHHHHHHHHHh--cCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHH
Confidence 999988887776 368999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 192 ALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
..+|+.++.+|...+-.++.|.+|+|+|
T Consensus 160 mkKCv~El~kRlvin~~~f~v~IVdkdG 187 (200)
T KOG0177|consen 160 MKKCVLELKKRLVINLPGFIVKIVDKDG 187 (200)
T ss_pred HHHHHHHHHHhcccCCCCcEEEEEcCCC
Confidence 9999999999999999999999999998
No 38
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-37 Score=245.71 Aligned_cols=190 Identities=22% Similarity=0.316 Sum_probs=180.9
Q ss_pred HHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 025640 26 EAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPM 105 (250)
Q Consensus 26 ~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 105 (250)
.-..||+|+|||.+.|++|+|+|+|.++++.+.+++..|||+++|+++++.+|+++|+..|...++..+..|+..++..|
T Consensus 24 PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~m 103 (235)
T KOG0179|consen 24 PYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKM 103 (235)
T ss_pred ccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccc
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCC-----
Q 025640 106 PVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYK----- 180 (250)
Q Consensus 106 ~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~----- 180 (250)
+...+|++|+..++.. +++||.+..||+|+|+++++.+|+.||.|++.+..+.|-|+++.+++++|+....
T Consensus 104 s~~s~A~lls~~LY~k----RFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~ 179 (235)
T KOG0179|consen 104 SIHSAAQLLSTILYSK----RFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQN 179 (235)
T ss_pred cHHHHHHHHHHHHhhc----ccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcc
Confidence 9999999999999743 5899999999999999989999999999999999999999999999999997542
Q ss_pred ------CCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 181 ------DDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 181 ------~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
..+|+|+|+.|+.++|..+.+|++.+++.++|+|++++|
T Consensus 180 ~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~g 224 (235)
T KOG0179|consen 180 LENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDG 224 (235)
T ss_pred cccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCC
Confidence 468999999999999999999999999999999999997
No 39
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-38 Score=246.22 Aligned_cols=207 Identities=17% Similarity=0.293 Sum_probs=189.7
Q ss_pred HhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 025640 27 AIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMP 106 (250)
Q Consensus 27 a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 106 (250)
.++.|+|++|+.+++||||++|+|++.|.++.++-.+|+.+|.|+|+||.||.++|+|.+.+.++.++..|...++.+++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHH
Q 025640 107 VEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISRE 186 (250)
Q Consensus 107 ~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ 186 (250)
+...|....++.++|+. -+.+.+||||||+..|.++|.+---|+..+.++..-|+|+.|++++++..|+|+|++|
T Consensus 95 v~~aA~l~r~~~Y~~re-----~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~E 169 (224)
T KOG0174|consen 95 VHTAASLFREICYNYRE-----MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLE 169 (224)
T ss_pred HHHHHHHHHHHHHhCHH-----hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHH
Confidence 99999999999888753 3889999999999889999999444555577777778999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhC
Q 025640 187 EAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHG 241 (250)
Q Consensus 187 ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~ 241 (250)
|++.+..+++..++.||-.+|+.|.+.+|+++| +..+.+.++++..+.....
T Consensus 170 E~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~G---ver~~~~~d~~~~~~v~t~ 221 (224)
T KOG0174|consen 170 ECVRFVKNAVSLAIERDGSSGGVIRLVIINKAG---VERRFFPGDKLGQFAVETP 221 (224)
T ss_pred HHHHHHHHHHHHHHhccCCCCCEEEEEEEccCC---ceEEEecCCccccccccCC
Confidence 999999999999999999999999999999998 5678888888876655443
No 40
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=237.11 Aligned_cols=211 Identities=19% Similarity=0.276 Sum_probs=198.4
Q ss_pred hcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 025640 28 IGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPV 107 (250)
Q Consensus 28 ~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 107 (250)
..+|+|.+|++++.|||+|+|+|.+.|.++.+...+||.+|+++++-.++|-++|++..-+.+..+|..|++.+++.|++
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHH
Q 025640 108 EQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREE 187 (250)
Q Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~e 187 (250)
...++.|+++++.|+ ++. +.+..+|+|||+ .||.||+||..|+-...+-+++|+|+.+++++|++.|+++|+.+|
T Consensus 148 saASKllsN~~y~Yk---GmG-LsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eE 222 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYK---GMG-LSMGTMIAGWDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEE 222 (285)
T ss_pred HHHHHHHHHHHhhcc---Ccc-hhheeeEeeccC-CCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHH
Confidence 999999999998875 332 788899999998 499999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhCCCCcccc
Q 025640 188 AVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAE 248 (250)
Q Consensus 188 a~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~ 248 (250)
|.+|++.++..+..||.++|+.+.++.|..+| |.+++..++..+..++.+..+.|.
T Consensus 223 A~~L~rrAI~hAThRDaySGG~vnlyHv~edG-----W~~v~~~Dv~~L~~~~~e~~~~~~ 278 (285)
T KOG0175|consen 223 AYDLARRAIYHATHRDAYSGGVVNLYHVKEDG-----WVKVSNTDVSELHYHYYEVAPPEA 278 (285)
T ss_pred HHHHHHHHHHHHHhcccccCceEEEEEECCcc-----ceecCCccHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999998 999999999999777766655543
No 41
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-35 Score=235.10 Aligned_cols=226 Identities=18% Similarity=0.202 Sum_probs=198.2
Q ss_pred ccccCCCCccc------ccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHH
Q 025640 9 TTIFSPEGRLY------QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSD 82 (250)
Q Consensus 9 ~~~f~p~G~l~------qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 82 (250)
+++|.|.|.+. .+..-+...-.|+++||++++||||||+|+..++|.+...++.+|+++|+|++++|++|..+|
T Consensus 13 ~~~f~~~~~~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD 92 (256)
T KOG0185|consen 13 PGTFYPSGSLMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISD 92 (256)
T ss_pred CCcCcCccchhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHH
Confidence 56777776542 222223345679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceE
Q 025640 83 ANILINTARVQAQRYT-YAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKA 161 (250)
Q Consensus 83 ~~~l~~~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~ 161 (250)
+|.|.+.+.....+.+ +.-+..+.|+.++.+|.+.++. +++.+.|+..+++|||+++++.|+|-.+|-.|...+.+.
T Consensus 93 ~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~--rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~ 170 (256)
T KOG0185|consen 93 FQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYA--RRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPV 170 (256)
T ss_pred HHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHH--hhhccCchhhheeEeeecCCCCeeEEEEeeccccccCch
Confidence 9999999977766643 4556899999999999999974 567899999999999999988899999999999999999
Q ss_pred EEEeCChHHHHHHHHhhCC---CCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHH
Q 025640 162 AAIGANNQAAQSILKQDYK---DDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLV 238 (250)
Q Consensus 162 ~a~G~g~~~~~~~L~~~~~---~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~ 238 (250)
+|+|.|+..+.++|++.|. ++++.+||.+++.+||+.+..||+.+.++++|++|+.+| +..-.+..|..-|+
T Consensus 171 vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG-----v~i~~p~qv~~~W~ 245 (256)
T KOG0185|consen 171 VATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEG-----VTISKPYQVKTNWD 245 (256)
T ss_pred hhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccc-----eEecCceeeeecch
Confidence 9999999999999999997 789999999999999999999999999999999999987 67777777766555
Q ss_pred HhC
Q 025640 239 KHG 241 (250)
Q Consensus 239 ~~~ 241 (250)
-.+
T Consensus 246 fa~ 248 (256)
T KOG0185|consen 246 FAE 248 (256)
T ss_pred hhh
Confidence 443
No 42
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-34 Score=234.16 Aligned_cols=190 Identities=22% Similarity=0.338 Sum_probs=175.7
Q ss_pred HHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCC
Q 025640 24 AMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQE 103 (250)
Q Consensus 24 a~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 103 (250)
+.++.+.|+|++|+.++||||+++|+|.+.|..+.+++..||+.|.++|+||.+|-++|..++...+..+++.+.++.++
T Consensus 30 ~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R 109 (271)
T KOG0173|consen 30 APKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGR 109 (271)
T ss_pred CCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCC
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCC
Q 025640 104 PMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDI 183 (250)
Q Consensus 104 ~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~ 183 (250)
.+.+-...++|.+.+..|- + -.++.+|++|+|.. ||+||.+.|.|+...-+|.++|+|+..+.++||.+|+|+|
T Consensus 110 ~~rVv~A~~mlkQ~LFrYq---G--~IgA~LiiGGvD~T-GpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dl 183 (271)
T KOG0173|consen 110 KPRVVTALRMLKQHLFRYQ---G--HIGAALILGGVDPT-GPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDL 183 (271)
T ss_pred CCceeeHHHHHHHHHHHhc---C--cccceeEEccccCC-CCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCccc
Confidence 9887777777777665542 3 38999999999995 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 184 SREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 184 s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
++|||++|+.+|+..-+..|..+|+++++|+|++.+
T Consensus 184 t~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~ 219 (271)
T KOG0173|consen 184 TKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKG 219 (271)
T ss_pred CHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCC
Confidence 999999999999999999899999999999999554
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=5.6e-32 Score=217.24 Aligned_cols=167 Identities=19% Similarity=0.188 Sum_probs=145.9
Q ss_pred CccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEe-cCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 025640 31 AGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKI-DDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQ 109 (250)
Q Consensus 31 g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 109 (250)
|+|+|||+++||||||+|+|++.|.++.+++.+||++| +++++|+++|..+|++.|.+.++.++..|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 68999999999999999999999999999999999999 9999999999999999999999999998872 22 355
Q ss_pred HHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecc--eEEEEeCChHHHHHHHHhhCC-CCCCHH
Q 025640 110 LVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW--KAAAIGANNQAAQSILKQDYK-DDISRE 186 (250)
Q Consensus 110 la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~L~~~~~-~~~s~~ 186 (250)
.++....+.. ....+|+.+++|++ |. |+||.+||.|++.+. +++++|+|+.++.++||+.|+ ++|
T Consensus 76 ~a~l~~~l~~----~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m--- 143 (172)
T PRK05456 76 AVELAKDWRT----DRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL--- 143 (172)
T ss_pred HHHHHHHHHh----ccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---
Confidence 5544433211 11246888999995 32 689999999999766 899999999999999999999 999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEEE
Q 025640 187 EAVQLALKVLSKTMDSTSLTSDKLELAE 214 (250)
Q Consensus 187 ea~~l~~~~l~~~~~~~~~~~~~iei~i 214 (250)
||++++++|++.+.+||..++++|+|-.
T Consensus 144 eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 144 SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 9999999999999999999999998865
No 44
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-32 Score=209.60 Aligned_cols=188 Identities=15% Similarity=0.195 Sum_probs=179.5
Q ss_pred hcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 025640 28 IGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPV 107 (250)
Q Consensus 28 ~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 107 (250)
..||+++||+.++++|.||+|.|....+...+++++|||+++|++++|.+|++.|++.+.+.++.....|++..+++|.|
T Consensus 5 synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P 84 (204)
T KOG0180|consen 5 SYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKP 84 (204)
T ss_pred eecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCc
Confidence 36899999999999999999999988777778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCcee-cceEEEEeCChHHHHHHHHhhCCCCCCHH
Q 025640 108 EQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYG-GWKAAAIGANNQAAQSILKQDYKDDISRE 186 (250)
Q Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~-~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ 186 (250)
+.++..+|..+++. +..||.+.-+|||+|++..|++...|..|... ..+|++.|.+++.+++..|..|+|+|..|
T Consensus 85 ~~~s~mvS~~lYek----RfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd 160 (204)
T KOG0180|consen 85 ETFSSMVSSLLYEK----RFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPD 160 (204)
T ss_pred HHHHHHHHHHHHHh----hcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHH
Confidence 99999999999876 47899999999999998899999999999987 56899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 187 EAVQLALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 187 ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
+..+.+.++|-.+.+||+.+|+...+.+|+++.
T Consensus 161 ~LFetisQa~Lna~DRDalSGwGa~vyiI~kdk 193 (204)
T KOG0180|consen 161 ELFETISQALLNAVDRDALSGWGAVVYIITKDK 193 (204)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCeEEEEEccch
Confidence 999999999999999999999999999999986
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=2.6e-31 Score=211.96 Aligned_cols=165 Identities=18% Similarity=0.173 Sum_probs=143.1
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecC-ceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDD-HVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQL 110 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 110 (250)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|++ +++||++|..+|++.|.++++.+++.|+...++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 589999999999999999999999999999999999999 999999999999999999999999999877663 34
Q ss_pred HHHHHHHHhhccccCCCccee-EEEEEEEEeCCCCeEEEEECCCCceecc--eEEEEeCChHHHHHHHHhhCCCC-CCHH
Q 025640 111 VQSLCDTKQGYTQFGGLRPFG-VSFLFAGWDKNYGFQLYMSDPSGNYGGW--KAAAIGANNQAAQSILKQDYKDD-ISRE 186 (250)
Q Consensus 111 a~~l~~~~~~~~~~~~~rP~~-~~~iv~G~d~~~~~~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~L~~~~~~~-~s~~ 186 (250)
++.+..++ .+ ..+|+. +.+++++|+ +||.+||.|++.+. ++.++|+|+.+++++||..|+++ |+
T Consensus 76 a~l~~~l~-~~----~~~~~l~a~~iv~~~~-----~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms-- 143 (171)
T cd01913 76 VELAKDWR-TD----RYLRRLEAMLIVADKE-----HTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS-- 143 (171)
T ss_pred HHHHHHHH-hc----cCcCceEEEEEEeCCC-----cEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC--
Confidence 44433332 11 234554 777776554 79999999999998 49999999999999999999995 99
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEEE
Q 025640 187 EAVQLALKVLSKTMDSTSLTSDKLELAE 214 (250)
Q Consensus 187 ea~~l~~~~l~~~~~~~~~~~~~iei~i 214 (250)
+.+++.++++.+.+||..++++|++-.
T Consensus 144 -~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 -AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred -HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 669999999999999999999998764
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=8.3e-31 Score=209.07 Aligned_cols=166 Identities=19% Similarity=0.206 Sum_probs=142.1
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEe-cCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKI-DDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQL 110 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 110 (250)
+|+|||+++||||||+|+|.+.|.++.+++.+||++| +++++||++|..+|++.|.++++.+++.|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 5899999999999999999999999999999999999 599999999999999999999999999887632 3555
Q ss_pred HHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecc--eEEEEeCChHHHHHHHHhhC-CCCCCHHH
Q 025640 111 VQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW--KAAAIGANNQAAQSILKQDY-KDDISREE 187 (250)
Q Consensus 111 a~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~L~~~~-~~~~s~~e 187 (250)
++.+... ..+...+.+.+.+|++||+ +||.+||.|++.+. ++.++|+|+.+++++||..| +++|+
T Consensus 76 a~l~~~~----~~~~~~~~l~a~~iv~~~~-----~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s--- 143 (171)
T TIGR03692 76 VELAKDW----RTDRYLRRLEAMLIVADKE-----TSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS--- 143 (171)
T ss_pred HHHHHHH----hhcccccccEEEEEEEcCC-----CEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---
Confidence 5555542 1111223344777776553 79999999999996 69999999999999999999 57788
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcEEEEE
Q 025640 188 AVQLALKVLSKTMDSTSLTSDKLELAE 214 (250)
Q Consensus 188 a~~l~~~~l~~~~~~~~~~~~~iei~i 214 (250)
|++++.++++.+++||..++++|+|-.
T Consensus 144 a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 144 AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 999999999999999999999999864
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=3.5e-29 Score=198.53 Aligned_cols=162 Identities=40% Similarity=0.558 Sum_probs=155.6
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||++++|+|||+|++.+.+.........|+++++++++++++|..+|++.+.+++++++..|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999999988666889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecc-eEEEEeCChHHHHHHHHhhCCCCCCHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW-KAAAIGANNQAAQSILKQDYKDDISREEAVQ 190 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~-~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~ 190 (250)
+.+++.++.+++ .||+++++||+|+|+ ++|+||.+||.|++.+. .++++|.++.++.++|++.|+++|+.+|+++
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVE 156 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999998877 799999999999998 68999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHH
Q 025640 191 LALKVLS 197 (250)
Q Consensus 191 l~~~~l~ 197 (250)
++.+||.
T Consensus 157 ~~~~~l~ 163 (164)
T cd01901 157 LALKALK 163 (164)
T ss_pred HHHHHHh
Confidence 9999986
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.8e-16 Score=124.54 Aligned_cols=187 Identities=19% Similarity=0.184 Sum_probs=147.9
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEec----CceEEEEeCchHHHHHHHHHHHHHHHHHHH-HhCCCCC
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKID----DHVACAVAGIMSDANILINTARVQAQRYTY-AYQEPMP 106 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~~ 106 (250)
+-|||++...|.|+++|+|++.|....+ .++|+|.-. .-++++.+|+.+-.|.+++.+.+..+...- .--...+
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~is-tfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYIS-TFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPS 80 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHH-HHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchh
Confidence 5699999999999999999999987655 567777652 356788999999999999998776652111 1112234
Q ss_pred HHHHHHHHHHHHhhccccC------CCcceeEEEEEEEEeCCCCeEEEEECCCCceec----ceEEEEeCChHHHHHHHH
Q 025640 107 VEQLVQSLCDTKQGYTQFG------GLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGG----WKAAAIGANNQAAQSILK 176 (250)
Q Consensus 107 ~~~la~~l~~~~~~~~~~~------~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~----~~~~a~G~g~~~~~~~L~ 176 (250)
+-..+..+....++-.-+. ..--|.|++|++|.-..+.|.||.+.|.|++.+ .+|..+|... +.+++|+
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEtK-YGKPild 159 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGETK-YGKPILD 159 (255)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccccc-cCchhhh
Confidence 4455555554443221111 123489999999998866789999999999984 5899999877 7999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCC
Q 025640 177 QDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPS 220 (250)
Q Consensus 177 ~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~ 220 (250)
+.+.-+++++|+.++++-+|....+.+..+|-++++-++++|..
T Consensus 160 R~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~ 203 (255)
T COG3484 160 RTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSF 203 (255)
T ss_pred hhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccce
Confidence 99999999999999999999999999999999999999999874
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.7e-14 Score=111.23 Aligned_cols=170 Identities=20% Similarity=0.240 Sum_probs=139.9
Q ss_pred CCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecC-ceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 025640 30 NAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDD-HVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVE 108 (250)
Q Consensus 30 ~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 108 (250)
.++|+++++.++-++||.|.+.+-|..+.+.+..|+.+|.+ +++.|++|..+|+..|.+.+...++.|+ .
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~---------g 73 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ---------G 73 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---------C
Confidence 57899999999999999999999999999888888888765 8999999999999999999998888764 1
Q ss_pred HHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecc--eEEEEeCChHHHHHHHHhhCC-CCCCH
Q 025640 109 QLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW--KAAAIGANNQAAQSILKQDYK-DDISR 185 (250)
Q Consensus 109 ~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~L~~~~~-~~~s~ 185 (250)
.|.+..-++.+.|+....+|.+.+-++|+ |+ -.+|-+...|-..+. +.++||+|..++.+..+..+. +++|
T Consensus 74 ~L~raavelaKdwr~Dk~lr~LEAmllVa--d~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls- 147 (178)
T COG5405 74 DLFRAAVELAKDWRTDKYLRKLEAMLLVA--DK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS- 147 (178)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHhhheeEe--CC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC-
Confidence 24444445555555555567788888887 33 347888888988743 599999999999999988876 4777
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcEEEEEEE
Q 025640 186 EEAVQLALKVLSKTMDSTSLTSDKLELAEVF 216 (250)
Q Consensus 186 ~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~ 216 (250)
|.+++.++|..+.+-+.+++++|.|-.+.
T Consensus 148 --A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 148 --AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred --HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 77899999999998888999998887764
No 50
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.56 E-value=9.5e-16 Score=80.10 Aligned_cols=23 Identities=70% Similarity=1.174 Sum_probs=22.3
Q ss_pred CCCCccccCCCCcccccchHHHH
Q 025640 5 YDSRTTIFSPEGRLYQVEYAMEA 27 (250)
Q Consensus 5 yd~~~~~f~p~G~l~qveya~~a 27 (250)
||+++|+|||||||+|||||.||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999987
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=97.18 E-value=0.02 Score=46.31 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=94.1
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+.+||..+++|+|||.|+|. +++-|.-.....|-+.+ ..|.=-+-++|.
T Consensus 2 SLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEeeL---------YsG~IktdeEL~ 50 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEEL---------YSGKIKTDEELL 50 (194)
T ss_pred eEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHHH---------hCCccCCHHHHH
Confidence 57899999999999999972 45667766655553332 234333445555
Q ss_pred HHHHHHH---hhccccCCCcceeEEEEEEEEeCC-----CCeEEEEE-------CCCCceecc-------eEEEEeC--C
Q 025640 112 QSLCDTK---QGYTQFGGLRPFGVSFLFAGWDKN-----YGFQLYMS-------DPSGNYGGW-------KAAAIGA--N 167 (250)
Q Consensus 112 ~~l~~~~---~~~~~~~~~rP~~~~~iv~G~d~~-----~~~~Ly~v-------d~~G~~~~~-------~~~a~G~--g 167 (250)
+....+= +-.--+...+-.+- +++|-+-.. ..-.+|.. |-.|+-... ..+.-|. -
T Consensus 51 kkA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk~~ 129 (194)
T PF09894_consen 51 KKAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFGNKFT 129 (194)
T ss_pred HHHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEECCHHH
Confidence 5433321 11000111222333 454444221 12356643 222221111 1233332 2
Q ss_pred hHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeC
Q 025640 168 NQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLM 218 (250)
Q Consensus 168 ~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~ 218 (250)
.+.+...|.++|++.|+++++.++..++|..+.......+..+++...++.
T Consensus 130 K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 130 KEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 356888999999999999999999999999998778888999999888654
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.29 E-value=0.11 Score=43.51 Aligned_cols=170 Identities=15% Similarity=0.175 Sum_probs=108.6
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+.+|+..+++|.|+|.|+|. +.+-|.-.|.+.+-+. +..|.-.+-++|+
T Consensus 2 tLviay~gknGaviaGDrR~----------------------i~frgdee~re~lEek---------LYsGeIkteEEL~ 50 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE----------------------ITFRGDEEDREKLEEK---------LYSGEIKTEEELA 50 (293)
T ss_pred eEEEEEecCCCcEEeccceE----------------------EEEecChhHHHHHHHH---------hhcCccccHHHHH
Confidence 57899999999999999872 3455666675555333 3355555667777
Q ss_pred HHHHHHHhhcccc---CCCcceeEEEEEEEEeCCC-----CeEEEEECCCCcee-------c---------ceEEEEeC-
Q 025640 112 QSLCDTKQGYTQF---GGLRPFGVSFLFAGWDKNY-----GFQLYMSDPSGNYG-------G---------WKAAAIGA- 166 (250)
Q Consensus 112 ~~l~~~~~~~~~~---~~~rP~~~~~iv~G~d~~~-----~~~Ly~vd~~G~~~-------~---------~~~~a~G~- 166 (250)
+....+--+.+-. ...|...-.++++-+...+ .-.+|-. .|++. + ...++-|.
T Consensus 51 r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT--~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk 128 (293)
T COG4079 51 RKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYAT--AGAYAIVELRGSEVTSTSQGKGSAIIVFGNK 128 (293)
T ss_pred HHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeec--CCceEEEEecCCeeEeeecCCCceEEEECcH
Confidence 7766543222211 1233344456666554421 1244432 23332 0 12334442
Q ss_pred -ChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHH
Q 025640 167 -NNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 237 (250)
Q Consensus 167 -g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~ 237 (250)
-.+.++.+|..+|.+.++++++.++..++|..+...-...+..+++..+++.-+ ++.++-.++|+.+.
T Consensus 129 ~~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d---~~~rl~kkDie~L~ 197 (293)
T COG4079 129 FTKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVD---PVLRLVKKDIETLR 197 (293)
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcC---HHHHHHHHHHHHHH
Confidence 234588899999999999999999999999999876788999999999986642 24455556665554
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=81.01 E-value=2.4 Score=32.33 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=39.9
Q ss_pred EEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 148 YMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 148 y~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
..+|-+|-....+|-.-|.|+..+-+-+-..|-.++++|||..+
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 35788999999999999999999999999999999999999764
No 54
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=54.67 E-value=45 Score=25.91 Aligned_cols=46 Identities=15% Similarity=-0.002 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCH
Q 025640 180 KDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSP 230 (250)
Q Consensus 180 ~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~ 230 (250)
.+.+|++.|.+++..++..+.. .+.++-+.+++..| +.+.+.+++.
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~----~g~~VtvaVVD~~G-~~~a~~RmDg 50 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQ----LGVPVTVAVVDAGG-HLVALERMDG 50 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHH----hCCceEEEEECCCC-CEEEEEecCC
Confidence 4779999999999999999886 27899999999887 4445555554
No 55
>PRK09732 hypothetical protein; Provisional
Probab=51.77 E-value=54 Score=25.20 Aligned_cols=45 Identities=7% Similarity=-0.136 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCH
Q 025640 181 DDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSP 230 (250)
Q Consensus 181 ~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~ 230 (250)
+.||++.|.+++..++..+.+. +.++-|+|++..| ..+-+.+++.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G-~l~a~~RmDg 49 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGG-HLLALSRMDD 49 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCC-CEEEEEEcCC
Confidence 5699999999999999999873 5689999999887 4455666654
No 56
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=51.03 E-value=16 Score=23.85 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=28.7
Q ss_pred cccCC-CCcccccchHHHHhcCCccEEEEEeCC
Q 025640 10 TIFSP-EGRLYQVEYAMEAIGNAGSAIGILSKD 41 (250)
Q Consensus 10 ~~f~p-~G~l~qveya~~a~~~g~t~igi~~~d 41 (250)
|.||+ +|.+-.-+|+..|..+|-..+||.-.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 57888 999999999999999999999988776
No 57
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=49.54 E-value=74 Score=26.09 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=29.9
Q ss_pred hCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeC
Q 025640 101 YQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK 141 (250)
Q Consensus 101 ~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~ 141 (250)
+..+-+|+.++..++++++.|+++++.+ .++|+|+.-
T Consensus 41 fw~~rtP~~~a~Dl~~~i~~y~~~w~~~----~vvLiGYSF 77 (192)
T PF06057_consen 41 FWSERTPEQTAADLARIIRHYRARWGRK----RVVLIGYSF 77 (192)
T ss_pred HhhhCCHHHHHHHHHHHHHHHHHHhCCc----eEEEEeecC
Confidence 3356789999999999999999887776 568888843
No 58
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=42.61 E-value=16 Score=22.44 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=22.4
Q ss_pred EeCChHHHHHHHHhhC-CCCCCHHHHHHHHHH
Q 025640 164 IGANNQAAQSILKQDY-KDDISREEAVQLALK 194 (250)
Q Consensus 164 ~G~g~~~~~~~L~~~~-~~~~s~~ea~~l~~~ 194 (250)
.|+....+...+.+.. .++++.++.++.+++
T Consensus 13 LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp TTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 4777777888888776 899998888777665
No 59
>PRK08452 flagellar protein FlaG; Provisional
Probab=35.74 E-value=1.2e+02 Score=23.04 Aligned_cols=56 Identities=9% Similarity=-0.099 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhhc----CCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhCC
Q 025640 185 REEAVQLALKVLSKTMD----STSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGV 242 (250)
Q Consensus 185 ~~ea~~l~~~~l~~~~~----~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~~ 242 (250)
++++++-+-+.|..... .-....+.+-|.|++++++ + .+|.+|++++-.+..++.+
T Consensus 55 l~~~ve~lN~~~~~~~~~L~F~~de~~~~~vVkVvD~~T~-e-VIRqIP~Ee~L~l~~~m~e 114 (124)
T PRK08452 55 LEELTEKLNEEMKRLDTNIRFGYNDKIKGLVVSVKEANGG-K-VIREIPSKEAIELMEYMRD 114 (124)
T ss_pred HHHHHHHHHHHHHhhCCceEEEEcCCCCcEEEEEEECCCC-c-eeeeCCCHHHHHHHHHHHH
Confidence 34455555555554321 1123456788999998863 3 4799999999998887754
No 60
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=35.68 E-value=69 Score=19.17 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=21.8
Q ss_pred cccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEE
Q 025640 10 TIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLV 46 (250)
Q Consensus 10 ~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla 46 (250)
.+-.|||+..|+-- +-.-|.+.+..|+|+.
T Consensus 4 Gii~~dG~~~q~~~-------~~a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 4 GIITPDGTNVQFPH-------GVANIVLIGPSGAVLS 33 (40)
T ss_pred ceECCCCCEEECCc-------ccceEEEECCceEEee
Confidence 35679999999862 2225788888888875
No 61
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=35.25 E-value=63 Score=24.37 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECC
Q 025640 181 DDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCS 229 (250)
Q Consensus 181 ~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~ 229 (250)
|.+++++|.+++..++..+.++ +.++-|+||+..| ..+-+.+++
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G-~~~~~~r~d 44 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGG-HLLAFARMD 44 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS--EEEEEE-T
T ss_pred CCcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCC-CEEEEEecC
Confidence 4578999999999999999974 3568899998876 334455555
No 62
>PRK08868 flagellar protein FlaG; Provisional
Probab=33.64 E-value=2.3e+02 Score=22.09 Aligned_cols=56 Identities=9% Similarity=-0.013 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhhcC----CCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhCC
Q 025640 185 REEAVQLALKVLSKTMDS----TSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGV 242 (250)
Q Consensus 185 ~~ea~~l~~~~l~~~~~~----~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~~ 242 (250)
+++|++-+.+.+...... -....+.+-|.|++++.+ . .+|.++++|+-.++.++.+
T Consensus 73 l~~aVeklNe~~~~~n~~L~F~vdeetgr~VVkViD~~T~-E-VIRQIP~Ee~L~la~~l~e 132 (144)
T PRK08868 73 LEKMVEQMNEFVKSINKGLSFRVDEESGRDVVTIYEASTG-D-IIRQIPDEEMLEVLRRLAE 132 (144)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCCCEEEEEEECCCC-c-eeeeCCCHHHHHHHHHHHH
Confidence 344555555555544321 123456778999998873 3 4799999999999888763
No 63
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=31.24 E-value=77 Score=19.70 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=23.7
Q ss_pred EEECCCCceecceEEEEeCChHHHHHHHHhh
Q 025640 148 YMSDPSGNYGGWKAAAIGANNQAAQSILKQD 178 (250)
Q Consensus 148 y~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~ 178 (250)
|.|+|+|.....--...|.+...+...|++.
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~ 33 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEA 33 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHH
Confidence 7789999988777777787777777766654
No 64
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=28.72 E-value=45 Score=29.05 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=37.4
Q ss_pred EEEEeCCCCe-EEEEECCCCceecceEEEEeCC-hHHHHHHHHhhCC-CCCCHHHHHHHHHH
Q 025640 136 FAGWDKNYGF-QLYMSDPSGNYGGWKAAAIGAN-NQAAQSILKQDYK-DDISREEAVQLALK 194 (250)
Q Consensus 136 v~G~d~~~~~-~Ly~vd~~G~~~~~~~~a~G~g-~~~~~~~L~~~~~-~~~s~~ea~~l~~~ 194 (250)
+.|.|+..|- -......+|-|... ..|.. -..-.+-|-+.|. +++|+|+|++|...
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsL 135 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLLSL 135 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHHcC
Confidence 4578866554 44556677776543 45655 4456666777787 67999999887643
No 65
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=27.03 E-value=1.1e+02 Score=19.39 Aligned_cols=29 Identities=31% Similarity=0.243 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeC
Q 025640 183 ISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLM 218 (250)
Q Consensus 183 ~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~ 218 (250)
-|++||++.|.+-|.... +.+++-|+.+.
T Consensus 5 kt~eeAi~~A~~~l~~~~-------~~~~~eVi~~g 33 (52)
T PF14804_consen 5 KTVEEAIEKALKELGVPR-------EELEYEVIEEG 33 (52)
T ss_dssp SSHHHHHHHHHHHTT--G-------GGEEEEEEE--
T ss_pred CCHHHHHHHHHHHhCCCh-------HHEEEEEEEcC
Confidence 478999988888776554 47899999864
No 66
>PRK07738 flagellar protein FlaG; Provisional
Probab=26.64 E-value=2.4e+02 Score=21.12 Aligned_cols=56 Identities=14% Similarity=0.026 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhhcC----CCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhCC
Q 025640 185 REEAVQLALKVLSKTMDS----TSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGV 242 (250)
Q Consensus 185 ~~ea~~l~~~~l~~~~~~----~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~~ 242 (250)
++++++-+.+.+...... -....+.+-|.+++++. ++ .+|.++++++-.++.++.+
T Consensus 48 l~~aveklN~~l~~~~~~L~F~vdeet~~~vVkVvD~~T-~E-VIRQIPpEe~L~l~~~m~e 107 (117)
T PRK07738 48 LEEVVDGMNELLEPSQTSLKFELHEKLNEYYVQVVDERT-NE-VIREIPPKKLLDMYAAMME 107 (117)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCC-Ce-eeeeCCCHHHHHHHHHHHH
Confidence 344455555555543211 11335788999999886 33 4799999999999887764
No 67
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=25.22 E-value=2.7e+02 Score=21.71 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=57.2
Q ss_pred EECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcE-EEEE---EEeCCCCcee
Q 025640 149 MSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKL-ELAE---VFLMPSGKVK 224 (250)
Q Consensus 149 ~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~i-ei~i---i~~~~~~~~~ 224 (250)
.+| .|......|-..|.+...+-+-+=-.+-.+.|.+||+++.......+..........+ ++.+ |.+-+ .++.
T Consensus 48 kv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~~~~~~~~~~l~d~~~l~~v~~~p-~r~~ 125 (150)
T COG0822 48 KVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAKELGGDPDDRLGDLVALAGVALPP-ARIK 125 (150)
T ss_pred EEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhHhhhhhcccc-cccc
Confidence 355 7888888999999888877777777888999999999999555555543222112221 1111 11111 1122
Q ss_pred EEECCHHHHHHHHHHhCCCC
Q 025640 225 YQVCSPEALSKLLVKHGVTQ 244 (250)
Q Consensus 225 ~~~~~~~ei~~~~~~~~~~~ 244 (250)
=-.|..+-++.-+..+...+
T Consensus 126 C~~L~~~al~~ai~~~~~~~ 145 (150)
T COG0822 126 CSLLAWDALKAAIKDYKGKA 145 (150)
T ss_pred chhccHHHHHHHHHHhhccc
Confidence 22477777777766665543
No 68
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=25.16 E-value=1.3e+02 Score=21.73 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=25.3
Q ss_pred CCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhC
Q 025640 207 SDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHG 241 (250)
Q Consensus 207 ~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~ 241 (250)
.+.+-|.++++++ ++ .+|.++++++-.+..++.
T Consensus 65 ~~~~vVkViD~~T-~e-VIRqIP~Ee~l~l~~~l~ 97 (107)
T PF03646_consen 65 SGRVVVKVIDKET-GE-VIRQIPPEELLDLAKRLR 97 (107)
T ss_dssp TTEEEEEEEETTT--S-EEEEE-HHHHHHHHHHHH
T ss_pred CCcEEEEEEECCC-Cc-EEEeCCcHHHHHHHHHHH
Confidence 4678899999886 33 479999999999887765
No 69
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=22.80 E-value=36 Score=24.41 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=16.9
Q ss_pred CccccCCCCcccccchHHHHhcCCccEEEE
Q 025640 8 RTTIFSPEGRLYQVEYAMEAIGNAGSAIGI 37 (250)
Q Consensus 8 ~~~~f~p~G~l~qveya~~a~~~g~t~igi 37 (250)
.++.|.|+||+-=-.|+...+.+|--||.+
T Consensus 32 vla~F~~~~rl~Ys~~~~P~~~~GvkcVvV 61 (92)
T PF12112_consen 32 VLASFRPDHRLSYSPYVRPMVINGVKCVVV 61 (92)
T ss_dssp TT-EE-SSSSEE--TTEEE--BTTB--EEE
T ss_pred HHHccCCCCceEecCcccceEECCEEEEEE
Confidence 357899999988888888888777766544
No 70
>PF05113 DUF693: Protein of unknown function (DUF693); InterPro: IPR007800 This family consists of uncharacterised proteins from Borrelia burgdorferi.
Probab=22.68 E-value=2.4e+02 Score=24.51 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=40.1
Q ss_pred EEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHH---HhhCCCCCCHHHHHHHH
Q 025640 132 VSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSIL---KQDYKDDISREEAVQLA 192 (250)
Q Consensus 132 ~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L---~~~~~~~~s~~ea~~l~ 192 (250)
-.+|.+|+= |+-+=...|.|.+.-.--.-.=+.+.+...-| +..--.+||.+||++.+
T Consensus 97 y~FImaGyL---g~Pmstdyp~gDFsvelev~LlsksnFfnRkl~~~e~k~fKg~TV~daI~sv 157 (314)
T PF05113_consen 97 YDFIMAGYL---GAPMSTDYPGGDFSVELEVYLLSKSNFFNRKLDGKEYKNFKGMTVQDAIKSV 157 (314)
T ss_pred ccEEeeccc---CCCceeccCCCceEEEEEEEEeecchhHhhhhccccccccCCcCHHHHHHHh
Confidence 378889982 34355666888887555555556677888888 54445788888888655
No 71
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.65 E-value=2.2e+02 Score=20.00 Aligned_cols=30 Identities=7% Similarity=0.168 Sum_probs=23.7
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHh
Q 025640 170 AAQSILKQDYKDDISREEAVQLALKVLSKT 199 (250)
Q Consensus 170 ~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~ 199 (250)
.+..+|++.-.|++|+++.+++=.+++...
T Consensus 33 rakeiLe~LndpeisL~eSvkLYkeG~~lL 62 (86)
T PRK14065 33 SLEQAIDRLNDPNLSLKDGMDLYKTAMQEL 62 (86)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 477888888889999999888777766554
No 72
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.98 E-value=1e+02 Score=28.38 Aligned_cols=124 Identities=17% Similarity=0.183 Sum_probs=71.7
Q ss_pred CceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCC------
Q 025640 70 DHVACAVAGIMSDANILINTARVQAQRYTYAYQEP-MPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKN------ 142 (250)
Q Consensus 70 ~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~------ 142 (250)
|-|+.+-+|..--.-+++-.+.+.+++-+.-+..- -|.++||..|+.......+..+ +-|.+|+||.|-.
T Consensus 100 dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig---lr~~~lvGG~~m~~q~~~L 176 (476)
T KOG0330|consen 100 DVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIG---LRVAVLVGGMDMMLQANQL 176 (476)
T ss_pred cEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccC---eEEEEEecCchHHHHHHHh
Confidence 45677778887666677777766555333222222 2668999999999988877655 4689999998652
Q ss_pred -CCeEEEEECCCCceecceEEEEeCChHHHH-HHHHhhCC-CCCCHHHHHHHHHHHHH
Q 025640 143 -YGFQLYMSDPSGNYGGWKAAAIGANNQAAQ-SILKQDYK-DDISREEAVQLALKVLS 197 (250)
Q Consensus 143 -~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~-~~L~~~~~-~~~s~~ea~~l~~~~l~ 197 (250)
..|++.. -.-|..+..---.-|..-..+. =.||+--+ -+|+.++-++-+++.+-
T Consensus 177 ~kkPhilV-aTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip 233 (476)
T KOG0330|consen 177 SKKPHILV-ATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP 233 (476)
T ss_pred hcCCCEEE-eCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC
Confidence 3577643 3345544322212232222211 12222222 35677777776666543
No 73
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=21.37 E-value=3.1e+02 Score=21.20 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=21.0
Q ss_pred EEEEEEEeCCCCeEEEEECCCCceecc
Q 025640 133 SFLFAGWDKNYGFQLYMSDPSGNYGGW 159 (250)
Q Consensus 133 ~~iv~G~d~~~~~~Ly~vd~~G~~~~~ 159 (250)
..++.|+|+...--+-.+|-.|.....
T Consensus 31 ~~lIVGiDPG~ttgiAildL~G~~l~l 57 (138)
T PF04312_consen 31 RYLIVGIDPGTTTGIAILDLDGELLDL 57 (138)
T ss_pred CCEEEEECCCceeEEEEEecCCcEEEE
Confidence 357899999666678888999987654
No 74
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=21.09 E-value=1.1e+02 Score=26.36 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=30.0
Q ss_pred EEEEeCCCCeEEEEECCCCceecc---eEEEEeCChHHHHHHHHhhCCCCCCHHHHHHHH
Q 025640 136 FAGWDKNYGFQLYMSDPSGNYGGW---KAAAIGANNQAAQSILKQDYKDDISREEAVQLA 192 (250)
Q Consensus 136 v~G~d~~~~~~Ly~vd~~G~~~~~---~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~ 192 (250)
++|.|- .+..+|..|..... +-||.|.|+ |+...... =+++++|.-+++
T Consensus 104 IGGQD~----K~I~~~~~G~v~~f~MNdkCAAGTG~-FLe~~A~~---L~i~leel~~~a 155 (262)
T TIGR02261 104 IGALHG----RAIRMDERGKVEAYKMTSQCASGSGQ-FLENIARY---LGIAQDEIGSLS 155 (262)
T ss_pred eCCCce----EEEEEcCCCcEeeEEecCcccccccH-HHHHHHHH---hCCCHHHHHHHH
Confidence 466654 37888999987643 688889888 55544432 234444444443
No 75
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=20.72 E-value=42 Score=19.07 Aligned_cols=10 Identities=30% Similarity=0.873 Sum_probs=6.2
Q ss_pred ccccCCCCcc
Q 025640 9 TTIFSPEGRL 18 (250)
Q Consensus 9 ~~~f~p~G~l 18 (250)
-..|||||+-
T Consensus 13 ~p~~SpDGk~ 22 (39)
T PF07676_consen 13 SPAWSPDGKY 22 (39)
T ss_dssp EEEE-TTSSE
T ss_pred CEEEecCCCE
Confidence 3568888874
No 76
>PRK11325 scaffold protein; Provisional
Probab=20.20 E-value=2.7e+02 Score=20.93 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=38.4
Q ss_pred EECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHh
Q 025640 149 MSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKT 199 (250)
Q Consensus 149 ~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~ 199 (250)
.+|+.|.+.+..|.+.|.....+-.-+=-.+-.+.|++||..+..+.+...
T Consensus 46 ~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~~~ 96 (127)
T PRK11325 46 KVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAEE 96 (127)
T ss_pred EECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHHH
Confidence 455578888899999998776666655566678899999999888655443
Done!