Query 025640
Match_columns 250
No_of_seqs 124 out of 1139
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 14:27:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_C 20S proteasome; cell cy 100.0 1.2E-64 4E-69 433.9 30.8 246 1-247 1-247 (261)
2 1ryp_C 20S proteasome; multica 100.0 5.6E-63 1.9E-67 419.8 30.9 240 2-242 2-243 (244)
3 1ryp_A 20S proteasome; multica 100.0 1E-62 3.5E-67 417.9 27.7 233 3-242 1-241 (243)
4 1iru_E 20S proteasome; cell cy 100.0 2.5E-62 8.5E-67 415.1 28.4 232 1-239 3-240 (241)
5 1iru_G 20S proteasome; cell cy 100.0 9.8E-63 3.4E-67 420.4 25.7 240 1-243 3-242 (254)
6 1iru_A 20S proteasome; cell cy 100.0 5.8E-62 2E-66 414.0 30.2 237 1-242 3-244 (246)
7 1iru_D 20S proteasome; cell cy 100.0 1.9E-62 6.4E-67 417.4 27.0 238 1-248 1-240 (248)
8 1yar_A Proteasome alpha subuni 100.0 2.7E-62 9.4E-67 412.9 27.4 230 1-237 3-233 (233)
9 1ryp_D 20S proteasome; multica 100.0 5.6E-62 1.9E-66 412.9 28.4 232 4-242 1-236 (241)
10 3h4p_A Proteasome subunit alph 100.0 4.2E-63 1.5E-67 424.3 21.4 239 3-248 10-248 (264)
11 1j2p_A Alpha-ring, proteasome 100.0 5.3E-62 1.8E-66 414.2 27.7 235 1-243 4-239 (246)
12 1ryp_B 20S proteasome; multica 100.0 1.6E-61 5.4E-66 412.2 29.2 237 1-239 1-249 (250)
13 1iru_B 20S proteasome; cell cy 100.0 1.2E-61 4.2E-66 408.9 28.2 230 3-240 3-232 (233)
14 1ryp_E 20S proteasome; multica 100.0 1.2E-61 4E-66 411.2 27.1 233 6-244 1-239 (242)
15 3nzj_F Proteasome component C1 100.0 1.8E-60 6.1E-65 411.7 27.7 235 3-241 6-244 (288)
16 1iru_F 20S proteasome; cell cy 100.0 9.3E-61 3.2E-65 410.0 24.5 233 1-241 1-237 (263)
17 1ryp_G 20S proteasome; multica 100.0 1.1E-59 3.9E-64 399.3 28.2 231 3-240 2-238 (244)
18 1ryp_F 20S proteasome; multica 100.0 2E-60 6.9E-65 401.4 21.5 225 4-237 4-233 (233)
19 1q5q_A Proteasome alpha-type s 100.0 4.2E-51 1.4E-55 349.3 20.0 225 9-245 4-240 (259)
20 3mi0_A Proteasome subunit alph 100.0 1.3E-49 4.4E-54 337.3 23.0 233 1-248 1-245 (248)
21 3h4p_a Proteasome subunit beta 100.0 1.2E-48 4.2E-53 326.4 24.1 210 31-249 1-211 (219)
22 1yar_H Proteasome beta subunit 100.0 5E-47 1.7E-51 316.3 26.3 207 26-243 3-210 (217)
23 1j2q_H Proteasome beta subunit 100.0 1.8E-46 6E-51 309.8 26.2 201 32-242 1-202 (202)
24 1q5r_H Proteasome beta-type su 100.0 1.1E-46 3.7E-51 326.5 24.3 218 24-247 58-289 (294)
25 3nzj_K Proteasome component PR 100.0 5.5E-47 1.9E-51 327.2 21.3 221 13-242 51-277 (287)
26 2jay_A Proteasome; hydrolase; 100.0 1.1E-46 3.8E-51 326.1 23.1 235 3-244 23-278 (291)
27 1iru_L 20S proteasome; cell cy 100.0 6.3E-46 2.1E-50 306.9 22.7 203 32-244 1-203 (204)
28 1ryp_L 20S proteasome; multica 100.0 4E-46 1.4E-50 309.8 20.4 202 32-242 1-202 (212)
29 1q5q_H Proteasome beta-type su 100.0 1.1E-45 3.6E-50 311.8 22.6 211 32-248 1-225 (235)
30 1iru_H 20S proteasome; cell cy 100.0 5.6E-46 1.9E-50 307.4 19.3 200 32-239 1-200 (205)
31 1ryp_N 20S proteasome; multica 100.0 1.1E-46 3.8E-51 317.5 14.3 209 25-240 2-222 (233)
32 1iru_N 20S proteasome; cell cy 100.0 2.5E-46 8.7E-51 312.5 14.5 206 25-238 2-210 (219)
33 1ryp_H 20S proteasome; multica 100.0 9.6E-45 3.3E-49 300.0 22.4 189 25-219 3-191 (205)
34 1iru_M 20S proteasome; cell cy 100.0 2.6E-44 9E-49 299.1 24.5 188 28-219 6-202 (213)
35 1ryp_K 20S proteasome; multica 100.0 1.7E-44 5.7E-49 297.0 22.4 192 32-230 2-194 (198)
36 1g0u_M Proteasome component PR 100.0 6.1E-46 2.1E-50 318.5 13.1 215 20-241 30-256 (266)
37 3unf_H Proteasome subunit beta 100.0 2.4E-44 8.2E-49 302.9 21.2 194 32-236 1-194 (234)
38 1iru_J 20S proteasome; cell cy 100.0 1.5E-43 5E-48 292.9 24.9 188 28-219 5-194 (205)
39 1ryp_J 20S proteasome; multica 100.0 2.9E-43 1E-47 290.9 26.4 188 27-219 4-193 (204)
40 3nzj_H Proteasome component PU 100.0 1.1E-43 3.7E-48 303.1 24.3 189 25-219 23-211 (261)
41 1ryp_M 20S proteasome; multica 100.0 1.5E-43 5E-48 296.3 24.0 189 27-219 5-211 (222)
42 3unf_N Proteasome subunit beta 100.0 7.6E-44 2.6E-48 293.3 18.1 196 32-237 1-197 (199)
43 1iru_K 20S proteasome; cell cy 100.0 8.7E-43 3E-47 287.4 23.0 191 32-229 2-192 (201)
44 1ryp_I 20S proteasome; multica 100.0 3.1E-42 1E-46 288.3 24.0 182 32-219 1-182 (222)
45 1iru_I 20S proteasome; cell cy 100.0 6.3E-42 2.1E-46 288.5 23.7 189 32-231 1-189 (234)
46 2z3b_A ATP-dependent protease 100.0 9.8E-36 3.3E-40 241.2 16.4 170 29-215 3-179 (180)
47 1m4y_A ATP-dependent protease 100.0 4.2E-35 1.4E-39 235.6 17.0 167 32-215 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 8.4E-35 2.9E-39 234.5 16.3 168 32-216 1-173 (174)
49 1vd2_A Protein kinase C, IOTA 36.7 50 0.0017 22.5 4.3 58 180-246 23-80 (89)
50 2hc5_A ORF 99, hypothetical pr 33.4 59 0.002 23.3 4.4 33 207-241 66-98 (117)
51 3rj2_X ORF158L protein, putati 33.0 7.7 0.00026 28.0 -0.4 15 6-20 56-70 (138)
52 3fpw_A HBPS, extracellular HAE 28.8 1.2E+02 0.0042 23.7 5.9 45 180-229 62-106 (192)
53 2i7n_A Pantothenate kinase 1; 25.0 73 0.0025 27.6 4.3 56 135-195 178-233 (360)
54 2a2l_A Unknown; structural gen 25.0 90 0.0031 23.1 4.4 45 181-230 10-54 (145)
55 2yxo_A Histidinol phosphatase; 21.7 48 0.0017 26.5 2.5 32 10-41 8-39 (267)
56 3hvz_A Uncharacterized protein 20.6 25 0.00086 23.2 0.4 36 6-41 5-48 (78)
No 1
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.2e-64 Score=433.92 Aligned_cols=246 Identities=59% Similarity=0.971 Sum_probs=233.1
Q ss_pred CCCCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCch
Q 025640 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIM 80 (250)
Q Consensus 1 ~~~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~ 80 (250)
|+++||+++|+|||||||||||||++|+.+|+|+|||+++||||||+|+|.++|+++.+++.+||++|+++++|+++|..
T Consensus 1 m~~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~ 80 (261)
T 1iru_C 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGIT 80 (261)
T ss_dssp -CTTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECH
T ss_pred CCCccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcH
Confidence 89999999999999999999999999999999999999999999999999999999988778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecce
Q 025640 81 SDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 160 (250)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~ 160 (250)
+|++.+.+.++.++..|++.++.+++++.+++.+++++|.|+++.+.|||+|++||||||+..||+||.+||.|++.+++
T Consensus 81 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 160 (261)
T 1iru_C 81 SDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWK 160 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeee
Confidence 99999999999999999999999999999999999999999999899999999999999976689999999999999999
Q ss_pred EEEEeCChHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 025640 161 AAAIGANNQAAQSILKQDYKD-DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVK 239 (250)
Q Consensus 161 ~~a~G~g~~~~~~~L~~~~~~-~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~ 239 (250)
++|+|+|+.+++++|++.|++ +||++||++++++||..+.+++..++++++|++|++++. ...|++++++||+.++..
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~-~~~~~~l~~~ei~~~l~~ 239 (261)
T 1iru_C 161 ATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENG-KTVIRVLKQKEVEQLIKK 239 (261)
T ss_dssp EEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSS-SCEEEECCHHHHHHHHHH
T ss_pred eEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCC-eeeEEECCHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999862 224899999999999999
Q ss_pred hCCCCccc
Q 025640 240 HGVTQPAA 247 (250)
Q Consensus 240 ~~~~~~~~ 247 (250)
+.+.+.++
T Consensus 240 ~~~~~~~~ 247 (261)
T 1iru_C 240 HEEEEAKA 247 (261)
T ss_dssp HHTTTTTT
T ss_pred HHhchhhh
Confidence 86544433
No 2
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=5.6e-63 Score=419.78 Aligned_cols=240 Identities=60% Similarity=0.994 Sum_probs=228.3
Q ss_pred CCCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchH
Q 025640 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMS 81 (250)
Q Consensus 2 ~~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~ 81 (250)
+|+||+++|+|||||||+|||||.+|+.+|+|+|||+++||||||+|+|.++++++.+++.+||++|+++++|+++|..+
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~a 81 (244)
T 1ryp_C 2 SRRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTA 81 (244)
T ss_dssp CGGGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHH
T ss_pred CCccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHH
Confidence 57899999999999999999999999999999999999999999999999999988667899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceE
Q 025640 82 DANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKA 161 (250)
Q Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~ 161 (250)
|++.+.+.++.++..|++.++.+++++.+++.+++++|.|+++.+.|||++++||||||+.++|+||.+||.|++.++++
T Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 161 (244)
T 1ryp_C 82 DAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKA 161 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999546999999999999999999
Q ss_pred EEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEE--eCCCCceeEEECCHHHHHHHHHH
Q 025640 162 AAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVF--LMPSGKVKYQVCSPEALSKLLVK 239 (250)
Q Consensus 162 ~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~--~~~~~~~~~~~~~~~ei~~~~~~ 239 (250)
+|+|+|+.+++++||+.|+++|+++||++++++||..+.+++..++++++|++|+ +++. ...|+.++++||+.++..
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~-~~~~~~l~~~ei~~~~~~ 240 (244)
T 1ryp_C 162 ISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDG-EVYQKIFKPQEIKDILVK 240 (244)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSS-SCEEEECCHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCC-ceeEEECCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999867789999999999 8862 124899999999999998
Q ss_pred hCC
Q 025640 240 HGV 242 (250)
Q Consensus 240 ~~~ 242 (250)
++.
T Consensus 241 ~~~ 243 (244)
T 1ryp_C 241 TGI 243 (244)
T ss_dssp HTC
T ss_pred hhc
Confidence 864
No 3
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1e-62 Score=417.92 Aligned_cols=233 Identities=31% Similarity=0.508 Sum_probs=222.4
Q ss_pred CCCCCCccccCCCCcccccchHHHHhcC-CccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchH
Q 025640 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGN-AGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMS 81 (250)
Q Consensus 3 ~~yd~~~~~f~p~G~l~qveya~~a~~~-g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~ 81 (250)
.+||+++|+|||||||||||||.||+++ |+|+|||+++||||||+|+|.+.++ +..++.+||++|+++++|+++|+.+
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l-~~~~~~~Ki~~i~~~i~~~~aG~~a 79 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKL-LDPTTVSYIFCISRTIGMVVNGPIP 79 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTT-BCGGGCCSEEECSSSCEEEEESCHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccc-cCCCcCCceEEECCCEEEEEEecHH
Confidence 3799999999999999999999999999 9999999999999999999999444 4456889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceE
Q 025640 82 DANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKA 161 (250)
Q Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~ 161 (250)
|++.+.+.++.++..|++.++.+++++.+++.+++.+|.|+++++.|||+|++||||||+.+||+||++||+|++.++++
T Consensus 80 D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~ 159 (243)
T 1ryp_A 80 DARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKA 159 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999998999999999999999866899999999999999999
Q ss_pred EEEeCChHHHHHHHHhhCCC-------CCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHH
Q 025640 162 AAIGANNQAAQSILKQDYKD-------DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALS 234 (250)
Q Consensus 162 ~a~G~g~~~~~~~L~~~~~~-------~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~ 234 (250)
+|+|+++++++++||+.|++ +||++||++++++||..+.+|+ .++++++|++|++++ +++++++||+
T Consensus 160 ~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g-----~~~l~~~ei~ 233 (243)
T 1ryp_A 160 TATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDK-----FFTLSAENIE 233 (243)
T ss_dssp EEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTE-----EEECCHHHHH
T ss_pred EEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC-----eEECCHHHHH
Confidence 99999999999999999998 9999999999999999999988 789999999999986 8999999999
Q ss_pred HHHHHhCC
Q 025640 235 KLLVKHGV 242 (250)
Q Consensus 235 ~~~~~~~~ 242 (250)
.++..+.+
T Consensus 234 ~~~~~~~~ 241 (243)
T 1ryp_A 234 ERLVAIAE 241 (243)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhhc
Confidence 99998844
No 4
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=2.5e-62 Score=415.09 Aligned_cols=232 Identities=38% Similarity=0.656 Sum_probs=220.4
Q ss_pred CCC-CCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCc
Q 025640 1 MSR-RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGI 79 (250)
Q Consensus 1 ~~~-~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~ 79 (250)
|+| +||+++|+|||||||+|||||.+|+.+|+|+|||+++||||||+|+|.++|+++ +++.+||++|+++++|+++|.
T Consensus 3 m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~ 81 (241)
T 1iru_E 3 LTRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGL 81 (241)
T ss_dssp -----CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEEC
T ss_pred CccCCCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeC
Confidence 677 899999999999999999999999999999999999999999999999999988 678999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCC-----CcceeEEEEEEEEeCCCCeEEEEECCCC
Q 025640 80 MSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-----LRPFGVSFLFAGWDKNYGFQLYMSDPSG 154 (250)
Q Consensus 80 ~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~-----~rP~~~~~iv~G~d~~~~~~Ly~vd~~G 154 (250)
.+|++.+.+.++.++..|++.++++++++.+++.+++++|.|+++.+ .|||++++||||||+ .||+||.+||.|
T Consensus 82 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~idp~G 160 (241)
T 1iru_E 82 IADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSG 160 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEECTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEECCCC
Confidence 99999999999999999999999999999999999999999999887 899999999999995 689999999999
Q ss_pred ceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHH
Q 025640 155 NYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALS 234 (250)
Q Consensus 155 ~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~ 234 (250)
++.+++++|+|+|+.+++++||+.|+++||++||++++++||..+.++ ..++++++|++|++++ .+++++++||+
T Consensus 161 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~----~~~~l~~~ei~ 235 (241)
T 1iru_E 161 TFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQ----NFHMFTKEELE 235 (241)
T ss_dssp CEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSS----CCEECCHHHHH
T ss_pred cEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCC----CeEECCHHHHH
Confidence 999999999999999999999999999999999999999999999998 7889999999999987 38999999999
Q ss_pred HHHHH
Q 025640 235 KLLVK 239 (250)
Q Consensus 235 ~~~~~ 239 (250)
.++.+
T Consensus 236 ~~~~~ 240 (241)
T 1iru_E 236 EVIKD 240 (241)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 99864
No 5
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=9.8e-63 Score=420.44 Aligned_cols=240 Identities=33% Similarity=0.519 Sum_probs=227.7
Q ss_pred CCCCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCch
Q 025640 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIM 80 (250)
Q Consensus 1 ~~~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~ 80 (250)
|+.+||+++|+|||||||||||||.+|+++|+|+|||+++||||||+|+|.++|+++. ++.+||++|+++++|+++|..
T Consensus 3 ~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~~~aG~~ 81 (254)
T 1iru_G 3 IGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGMAVAGLL 81 (254)
T ss_dssp CCSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEETTEEEEEEECH
T ss_pred cccccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEECCCEEEEEecCh
Confidence 5779999999999999999999999999999999999999999999999999999986 588999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecce
Q 025640 81 SDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 160 (250)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~ 160 (250)
+|++.+.+.++.++..|++.++.+++++.+++.+++++|.|++++++|||+|++||||||+..||+||.+||.|++.+++
T Consensus 82 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 161 (254)
T 1iru_G 82 ADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYW 161 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeee
Confidence 99999999999999999999999999999999999999999999899999999999999955689999999999999999
Q ss_pred EEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHh
Q 025640 161 AAAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKH 240 (250)
Q Consensus 161 ~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~ 240 (250)
++|+|+|+.+++++||+.|+++|+++||++++++||+.+.+++..++++++|++|+++..+ .++++++++++.++..+
T Consensus 162 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g--~~~~l~~~~i~~~~~~~ 239 (254)
T 1iru_G 162 GCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNG--RHEIVPKDIREEAEKYA 239 (254)
T ss_dssp EEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTT--CCEECCHHHHHHHHHHH
T ss_pred eEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCC--CeEECCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887778999999999987322 38999999999999887
Q ss_pred CCC
Q 025640 241 GVT 243 (250)
Q Consensus 241 ~~~ 243 (250)
++.
T Consensus 240 ~~~ 242 (254)
T 1iru_G 240 KES 242 (254)
T ss_dssp HHH
T ss_pred HHh
Confidence 643
No 6
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=5.8e-62 Score=414.01 Aligned_cols=237 Identities=32% Similarity=0.572 Sum_probs=225.0
Q ss_pred CCC--CCCCCccccCCCCcccccchHHHHhcC-CccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEe
Q 025640 1 MSR--RYDSRTTIFSPEGRLYQVEYAMEAIGN-AGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVA 77 (250)
Q Consensus 1 ~~~--~yd~~~~~f~p~G~l~qveya~~a~~~-g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~s 77 (250)
||+ +||+++|+|||||||+|||||.+|+.+ |+|+|||+++||||||+|+|.+. .++.+++.+||++|+++++|+++
T Consensus 3 m~~~~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~-~l~~~~~~~Ki~~i~~~i~~~~a 81 (246)
T 1iru_A 3 RGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPD-KLLDSSTVTHLFKITENIGCVMT 81 (246)
T ss_dssp CSCCCTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCC-SSBCGGGCCSEEESSSSCEEEEE
T ss_pred CCccCCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCC-cccCCCccCceEEECCCEEEEEe
Confidence 666 899999999999999999999999999 99999999999999999999995 44555688999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCcee
Q 025640 78 GIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYG 157 (250)
Q Consensus 78 G~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~ 157 (250)
|..+|++.+.+.++.++..|++.++.+++++.+++.+++++|.|+++.+.|||+|++||||||+.+||+||.+||.|++.
T Consensus 82 G~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~ 161 (246)
T 1iru_A 82 GMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYC 161 (246)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEE
Confidence 99999999999999999999999999999999999999999999998899999999999999986689999999999999
Q ss_pred cceEEEEeCChHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHH
Q 025640 158 GWKAAAIGANNQAAQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSK 235 (250)
Q Consensus 158 ~~~~~a~G~g~~~~~~~L~~~~~~--~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~ 235 (250)
+++++|+|+|+.+++++||+.|++ +|+++||++++++||..+.+++ .++++++|++|++++ ..|++++++||+.
T Consensus 162 ~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g---~~~~~l~~~ei~~ 237 (246)
T 1iru_A 162 GFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVEN---PKFRILTEAEIDA 237 (246)
T ss_dssp EBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTE---EEEEECCHHHHHH
T ss_pred EeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC---CeEEECCHHHHHH
Confidence 999999999999999999999999 9999999999999999999998 889999999999986 3489999999999
Q ss_pred HHHHhCC
Q 025640 236 LLVKHGV 242 (250)
Q Consensus 236 ~~~~~~~ 242 (250)
++..+.+
T Consensus 238 ~~~~~~~ 244 (246)
T 1iru_A 238 HLVALAE 244 (246)
T ss_dssp HHHHHHT
T ss_pred HHHHhhc
Confidence 9998843
No 7
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=1.9e-62 Score=417.38 Aligned_cols=238 Identities=37% Similarity=0.605 Sum_probs=224.8
Q ss_pred CCCCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCch
Q 025640 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIM 80 (250)
Q Consensus 1 ~~~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~ 80 (250)
|+ ||+++|+|||||||||||||++|+++|+|+|||+++||||||+|+|.++++.. .++.+||++|+++++|+++|..
T Consensus 1 ~~--yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~-~~~~~KI~~i~~~i~~~~aG~~ 77 (248)
T 1iru_D 1 MS--YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQD-ERTVRKICALDDNVCMAFAGLT 77 (248)
T ss_dssp -C--CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSC-GGGGCSEEESSSSCEEEEEECH
T ss_pred CC--ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCcc-CCCCCcEEEEcCCEEEEEeecH
Confidence 77 99999999999999999999999999999999999999999999999999654 4688999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecce
Q 025640 81 SDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 160 (250)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~ 160 (250)
+|++.+.+.++.++..|++.++++++++.+++.+++++|.|+++.+.|||+|++||||||+.++|+||.+||.|++.+++
T Consensus 78 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 157 (248)
T 1iru_D 78 ADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWK 157 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEee
Confidence 99999999999999999999999999999999999999999999899999999999999955699999999999999999
Q ss_pred EEEEeCChHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHH
Q 025640 161 AAAIGANNQAAQSILKQDYKDDI--SREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLV 238 (250)
Q Consensus 161 ~~a~G~g~~~~~~~L~~~~~~~~--s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~ 238 (250)
++|+|+|+.+++++||+.|+++| |++||++++++||..+.+ .++++++|++|++++ .|++++++||+.++.
T Consensus 158 ~~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g----~~~~l~~~ei~~~~~ 230 (248)
T 1iru_D 158 ANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQ----SLKILNPEEIEKYVA 230 (248)
T ss_dssp EEEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSS----CEECCCHHHHHHHTT
T ss_pred EEEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCC----cEEECCHHHHHHHHH
Confidence 99999999999999999999999 999999999999999997 468999999999986 489999999999999
Q ss_pred HhCCCCcccc
Q 025640 239 KHGVTQPAAE 248 (250)
Q Consensus 239 ~~~~~~~~~~ 248 (250)
.+.+.+++|.
T Consensus 231 ~~~~~~~~~~ 240 (248)
T 1iru_D 231 EIEKEKEENE 240 (248)
T ss_dssp TTTTTTTTTT
T ss_pred HHHhcchhhh
Confidence 8876665544
No 8
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=2.7e-62 Score=412.87 Aligned_cols=230 Identities=39% Similarity=0.694 Sum_probs=212.0
Q ss_pred CCC-CCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCc
Q 025640 1 MSR-RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGI 79 (250)
Q Consensus 1 ~~~-~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~ 79 (250)
|+| +||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.++++.. +++.+||++|+++++|+++|.
T Consensus 3 m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~-~~~~~Ki~~i~~~i~~~~aG~ 81 (233)
T 1yar_A 3 QGQMAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIE-QNSIEKIQLIDDYVAAVTSGL 81 (233)
T ss_dssp ----------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBC-STTCCSEEEEETTEEEEEEEB
T ss_pred cccccCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCccccc-ccccCeEEEecCCEEEEEeeC
Confidence 777 899999999999999999999999999999999999999999999999998654 568899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecc
Q 025640 80 MSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW 159 (250)
Q Consensus 80 ~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~ 159 (250)
.+|++.+.+.++.++..|++.++.+++++.+++.+++.+|.|+++.+.|||++++||||||+ .||+||.+||.|++.++
T Consensus 82 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~ 160 (233)
T 1yar_A 82 VADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEY 160 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEee
Confidence 99999999999999999999999999999999999999999999999999999999999998 58999999999999999
Q ss_pred eEEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHH
Q 025640 160 KAAAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 237 (250)
Q Consensus 160 ~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~ 237 (250)
+++|+|+|+.+++++||+.|+++||++||++++++||..+.+++. ++++++|++|++++ .+++++++||+.++
T Consensus 161 ~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~----~~~~~~~~ei~~~l 233 (233)
T 1yar_A 161 KATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGN----KYRIYDQEEVKKFL 233 (233)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTS----CCEECCHHHHHTTC
T ss_pred eEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCC----CEEECCHHHHHhhC
Confidence 999999999999999999999999999999999999999999887 79999999999986 38999999998753
No 9
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=5.6e-62 Score=412.90 Aligned_cols=232 Identities=36% Similarity=0.595 Sum_probs=223.7
Q ss_pred CCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHH
Q 025640 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDA 83 (250)
Q Consensus 4 ~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 83 (250)
+||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++|+++.+++.+||++|+++++|+++|..+|+
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS 80 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence 69999999999999999999999999999999999999999999999999999988789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCC-CCeEEEEECCCCceecceEE
Q 025640 84 NILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKN-YGFQLYMSDPSGNYGGWKAA 162 (250)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~-~~~~Ly~vd~~G~~~~~~~~ 162 (250)
+.+.+.++.++..|++.++.+++++.+++.+++.+|.++|++++|||++++||||||+. ++|+||.+||.|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~ 160 (241)
T 1ryp_D 81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQ 160 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeE
Confidence 99999999999999999999999999999999999999999899999999999999985 68999999999999999999
Q ss_pred EEeCChHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 025640 163 AIGANNQAAQSILKQDY---KDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVK 239 (250)
Q Consensus 163 a~G~g~~~~~~~L~~~~---~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~ 239 (250)
|+|+|+.+++++||+.| +++||++||++++++||..+.+ .++++++|++|++++ .++.++++||+.++..
T Consensus 161 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~----~~~~l~~~ei~~~~~~ 233 (241)
T 1ryp_D 161 TIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDS----DIVALSSEEINQYVTQ 233 (241)
T ss_dssp EESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTT----EEEECCHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCC----cEEECCHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999996 679999999999986 4899999999999998
Q ss_pred hCC
Q 025640 240 HGV 242 (250)
Q Consensus 240 ~~~ 242 (250)
+.+
T Consensus 234 ~~~ 236 (241)
T 1ryp_D 234 IEQ 236 (241)
T ss_dssp HTH
T ss_pred Hhh
Confidence 843
No 10
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.2e-63 Score=424.27 Aligned_cols=239 Identities=42% Similarity=0.723 Sum_probs=221.2
Q ss_pred CCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHH
Q 025640 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSD 82 (250)
Q Consensus 3 ~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 82 (250)
.+||+++|+|||||||||||||.+|+++|+|+|||+++||||||+|+|.++++.. +++.+||++|+++++|+++|..+|
T Consensus 10 ~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~-~~~~~KI~~i~d~i~~~~aG~~aD 88 (264)
T 3h4p_A 10 SAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVK-IRSIEKIFQIDDHVAAATSGLVAD 88 (264)
T ss_dssp ------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBC-TTTCCCEEEEETTEEEEEEECSHH
T ss_pred cccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccc-cCccccEEEecCcEEEEeccchHH
Confidence 4899999999999999999999999999999999999999999999999998654 568899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEE
Q 025640 83 ANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAA 162 (250)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~ 162 (250)
++.+.+.++.++..|++.++.+++++.+++.|++++|.|+++.++|||+|++||||||+ .||+||.+||.|++.+++++
T Consensus 89 ~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~ 167 (264)
T 3h4p_A 89 ARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKAT 167 (264)
T ss_dssp HHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEE
T ss_pred HHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeE
Confidence 99999999999999999999999999999999999999999999999999999999997 58999999999999999999
Q ss_pred EEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhCC
Q 025640 163 AIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGV 242 (250)
Q Consensus 163 a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~~ 242 (250)
|+|+|+.+++++|++.|+++||++||++++++||..+.++ .++++++|++|++++ ..|++++++||+.++..+.+
T Consensus 168 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~---~~~~~l~~~ei~~~~~~~~~ 242 (264)
T 3h4p_A 168 AIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKD---AQFKKIPVEEIKKLIEKVKK 242 (264)
T ss_dssp EESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTT---TEEEECCTTTTGGGTTTTTT
T ss_pred EECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCC---CcEEECCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986 799999999999875 25999999999999999987
Q ss_pred CCcccc
Q 025640 243 TQPAAE 248 (250)
Q Consensus 243 ~~~~~~ 248 (250)
..++|.
T Consensus 243 ~~~~~~ 248 (264)
T 3h4p_A 243 KLNEEN 248 (264)
T ss_dssp SSSCC-
T ss_pred hhhcch
Confidence 766553
No 11
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=5.3e-62 Score=414.19 Aligned_cols=235 Identities=41% Similarity=0.706 Sum_probs=223.4
Q ss_pred CCCCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCch
Q 025640 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIM 80 (250)
Q Consensus 1 ~~~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~ 80 (250)
|+++||+++|+|||||||+|||||.+|+.+|+|+|||+++||||||+|+|.+.++.. +++.+||++|+++++|+++|..
T Consensus 4 ~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~-~~~~~KI~~i~~~i~~~~aG~~ 82 (246)
T 1j2p_A 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLE-KDTIEKIYKIDEHICAATSGLV 82 (246)
T ss_dssp CCTTSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBC-GGGCCSEEECSSSEEEEEEECH
T ss_pred cccCcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccc-cCccCcEEEECCCEEEEEeEcc
Confidence 445899999999999999999999999999999999999999999999999998766 5688999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecce
Q 025640 81 SDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 160 (250)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~ 160 (250)
+|++.+.+.++.++..|++.++.+++++.+++.+++.+|.|+++.+.|||++++|||||| +||+||.+||.|++.+++
T Consensus 83 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~ 160 (246)
T 1j2p_A 83 ADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYK 160 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeee
Confidence 999999999999999999999999999999999999999999999999999999999999 589999999999999999
Q ss_pred EEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEE-eCCCCceeEEECCHHHHHHHHHH
Q 025640 161 AAAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVF-LMPSGKVKYQVCSPEALSKLLVK 239 (250)
Q Consensus 161 ~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~-~~~~~~~~~~~~~~~ei~~~~~~ 239 (250)
++|+|+|+.+++++||+.|+++||++||++++++||..+.++ ..++++++|++|+ +++ .|+.++++||+.++..
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~----~~~~l~~~ei~~~~~~ 235 (246)
T 1j2p_A 161 ATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDR----TFKEVSPEELKPYVER 235 (246)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTC----CCEECCHHHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCC----ceEECCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 8899999999999 643 3899999999999998
Q ss_pred hCCC
Q 025640 240 HGVT 243 (250)
Q Consensus 240 ~~~~ 243 (250)
+.+.
T Consensus 236 ~~~~ 239 (246)
T 1j2p_A 236 ANER 239 (246)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8543
No 12
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.6e-61 Score=412.21 Aligned_cols=237 Identities=34% Similarity=0.562 Sum_probs=222.2
Q ss_pred CCCCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCch
Q 025640 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIM 80 (250)
Q Consensus 1 ~~~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~ 80 (250)
|+++||+++|+|||||||+|||||.+|+.+|+|+|||+++||||||+|+|.+. .++.+++.+||++|+++++|+++|..
T Consensus 1 ~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~-~l~~~~~~~Ki~~i~~~i~~~~aG~~ 79 (250)
T 1ryp_B 1 MTDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSS-PLAMSETLSKVSLLTPDIGAVYSGMG 79 (250)
T ss_dssp CCCCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSC-SSBCGGGCCSSEEEETTEEEEEEECH
T ss_pred CCCcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCC-ccccCcccCceEEECCCEEEEeeeCH
Confidence 89999999999999999999999999999999999999999999999999985 44556688999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecc
Q 025640 81 SDANILINTARVQAQR-YTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW 159 (250)
Q Consensus 81 ~D~~~l~~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~ 159 (250)
+|++.+.+.++.++.. |+..++.+++++.+++.++++++.+++..++|||++++||||||+.+||+||.+||.|++.++
T Consensus 80 aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (250)
T 1ryp_B 80 PDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPW 159 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEee
Confidence 9999999999999999 999999999999999999999999999889999999999999998668999999999999999
Q ss_pred eEEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCC-----------CceeEEEC
Q 025640 160 KAAAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPS-----------GKVKYQVC 228 (250)
Q Consensus 160 ~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~-----------~~~~~~~~ 228 (250)
+++|+|+|+.+++++||+.|+++||++||++++++||..+.++ ..++++++|++|++++. ....|+++
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l 238 (250)
T 1ryp_B 160 KATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEG-EFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKL 238 (250)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCS-CCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEEC
T ss_pred ceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcc-ccCCCCEEEEEEEccccccccccccccCCCCCeEEC
Confidence 9999999999999999999999999999999999999999987 56899999999998731 12359999
Q ss_pred CHHHHHHHHHH
Q 025640 229 SPEALSKLLVK 239 (250)
Q Consensus 229 ~~~ei~~~~~~ 239 (250)
+++||+.++..
T Consensus 239 ~~~ei~~~l~~ 249 (250)
T 1ryp_B 239 TSQEINDRLEA 249 (250)
T ss_dssp CHHHHHHHHTT
T ss_pred CHHHHHHHHHh
Confidence 99999999864
No 13
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.2e-61 Score=408.92 Aligned_cols=230 Identities=37% Similarity=0.632 Sum_probs=219.9
Q ss_pred CCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHH
Q 025640 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSD 82 (250)
Q Consensus 3 ~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 82 (250)
.+||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|+++++|+++|..+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 3 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSI-LYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCS-SBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCcc-ccccccCCeEEEECCCEEEEEEEccHH
Confidence 5899999999999999999999999999999999999999999999999865 444568899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEE
Q 025640 83 ANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAA 162 (250)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~ 162 (250)
++.+.+.++.++..|++.++.+++++.+++.+++.+|.|+++.++|||++++||||||+ .||+||.+||.|++.+++++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~ 160 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKAT 160 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEE
Confidence 99999999999999999999999999999999999999999989999999999999996 58999999999999999999
Q ss_pred EEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHh
Q 025640 163 AIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKH 240 (250)
Q Consensus 163 a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~ 240 (250)
++|+|+.+++++||+.|+++||++||++++++||..+.+++ .++++++|++|++++ ++.++++||+.++..+
T Consensus 161 aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g-----~~~l~~~ei~~~~~~~ 232 (233)
T 1iru_B 161 AMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAG-----FRRLTPTEVKDYLAAI 232 (233)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTE-----EEECCHHHHHHHHTTC
T ss_pred EECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCC-----EEECCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988 779999999999986 8999999999998754
No 14
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.2e-61 Score=411.24 Aligned_cols=233 Identities=38% Similarity=0.623 Sum_probs=223.2
Q ss_pred CCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHH
Q 025640 6 DSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANI 85 (250)
Q Consensus 6 d~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 85 (250)
|+++|+|||||||||||||.+|+.+|+|+|||+++||||||+|+|.++|+++ +++.+||++|+++++|+++|..+|++.
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 79 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARS 79 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHH
Confidence 7899999999999999999999999999999999999999999999999988 668899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCC------CcceeEEEEEEEEeCCCCeEEEEECCCCceecc
Q 025640 86 LINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW 159 (250)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~------~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~ 159 (250)
+.+.++.++..|++.++.+++++.+++.+++++|.|+++.+ .|||++++||||||+.+||+||.+||.|++.++
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (242)
T 1ryp_E 80 MIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRY 159 (242)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEecc
Confidence 99999999999999999999999999999999999999888 999999999999996568999999999999999
Q ss_pred eEEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 025640 160 KAAAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVK 239 (250)
Q Consensus 160 ~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~ 239 (250)
+++|+|+|+.+++++||+.|+++||++||++++++||..+.++ ..++++++|++|++++ .+++++++||+.++..
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~----~~~~~~~~ei~~~~~~ 234 (242)
T 1ryp_E 160 NAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQD----GFKIYDNEKTAELIKE 234 (242)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTT----EEEECCHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCC----CeEECCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 7889999999999987 3899999999999998
Q ss_pred hCCCC
Q 025640 240 HGVTQ 244 (250)
Q Consensus 240 ~~~~~ 244 (250)
+.+.+
T Consensus 235 ~~~~~ 239 (242)
T 1ryp_E 235 LKEKE 239 (242)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 85433
No 15
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1.8e-60 Score=411.74 Aligned_cols=235 Identities=34% Similarity=0.561 Sum_probs=220.5
Q ss_pred CCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHH
Q 025640 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSD 82 (250)
Q Consensus 3 ~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 82 (250)
.+||+++|+|||||||||||||.+|+++|+|+|||+++||||||+|+|.++|+++.+ ..+||++|++||+|+++|+.+|
T Consensus 6 ~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD 84 (288)
T 3nzj_F 6 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPD 84 (288)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHH
T ss_pred CCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHH
Confidence 489999999999999999999999999999999999999999999999999999876 6799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEE
Q 025640 83 ANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAA 162 (250)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~ 162 (250)
++.+.+.++.++..|++.++.+++++.+++.|++++|.|++++++|||+|++||||||+ .||+||++||.|++.+++++
T Consensus 85 ~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~ 163 (288)
T 3nzj_F 85 GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGA 163 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEEcCEE
Confidence 99999999999999999999999999999999999999999999999999999999998 58999999999999999999
Q ss_pred EEeCChHHHHHHHHhh---CCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEe-CCCCceeEEECCHHHHHHHHH
Q 025640 163 AIGANNQAAQSILKQD---YKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFL-MPSGKVKYQVCSPEALSKLLV 238 (250)
Q Consensus 163 a~G~g~~~~~~~L~~~---~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~-~~~~~~~~~~~~~~ei~~~~~ 238 (250)
|+|+++++++++||+. |+++||++||++++++||..+.+++..+++.++|++|++ +..+ .++.++.++++.--.
T Consensus 164 aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~--~~~~vp~~~~~~~~~ 241 (288)
T 3nzj_F 164 ATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG--LHKFVKGDLLQEAID 241 (288)
T ss_dssp EESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTT--CCEECCHHHHHHHHH
T ss_pred EEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCc--eEEECCHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999888999999999998 4423 357788877766544
Q ss_pred HhC
Q 025640 239 KHG 241 (250)
Q Consensus 239 ~~~ 241 (250)
..+
T Consensus 242 ~~~ 244 (288)
T 3nzj_F 242 FAQ 244 (288)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 16
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=9.3e-61 Score=409.97 Aligned_cols=233 Identities=32% Similarity=0.544 Sum_probs=221.2
Q ss_pred CCC-CCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCc
Q 025640 1 MSR-RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGI 79 (250)
Q Consensus 1 ~~~-~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~ 79 (250)
|.| +||+++|+|||||||+|||||+||+++|+|+|||+++||||||+|+|.++++. ++.+||++|+++++|+++|.
T Consensus 1 m~~~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~---~~~~KI~~i~~~i~~~~aG~ 77 (263)
T 1iru_F 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGISIAGL 77 (263)
T ss_dssp ---CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEEC
T ss_pred CCcCCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc---cchhcEEEEcCCEEEEEeCC
Confidence 666 89999999999999999999999999999999999999999999999999974 36799999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecc
Q 025640 80 MSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW 159 (250)
Q Consensus 80 ~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~ 159 (250)
.+|++.+.+.++.++..|++.++.+++++.+++.+++.+|.|+++.+.|||+|++||||||+ .||+||.+||+|++.++
T Consensus 78 ~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~ 156 (263)
T 1iru_F 78 TADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDC 156 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEe
Confidence 99999999999999999999999999999999999999999999989999999999999998 58999999999999999
Q ss_pred eEEEEeCChHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHHhhcCC-CCCCCcEEEEEEEeCCCCceeEEECCHHHHHHH
Q 025640 160 KAAAIGANNQAAQSILKQDYKD--DISREEAVQLALKVLSKTMDST-SLTSDKLELAEVFLMPSGKVKYQVCSPEALSKL 236 (250)
Q Consensus 160 ~~~a~G~g~~~~~~~L~~~~~~--~~s~~ea~~l~~~~l~~~~~~~-~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~ 236 (250)
+++|+|+|+.+++++||+.|++ +||++||++++++||..+.+++ ..++++++|++|++++ .|++++++||+.+
T Consensus 157 ~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~----~~~~l~~~ei~~~ 232 (263)
T 1iru_F 157 RAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDL----EFTIYDDDDVSPF 232 (263)
T ss_dssp SEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTE----EEEEECSGGGHHH
T ss_pred eEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCC----CeEECCHHHHHHH
Confidence 9999999999999999999998 9999999999999999999998 4889999999999884 3899999999999
Q ss_pred HHHhC
Q 025640 237 LVKHG 241 (250)
Q Consensus 237 ~~~~~ 241 (250)
+..+.
T Consensus 233 ~~~~~ 237 (263)
T 1iru_F 233 LEGLE 237 (263)
T ss_dssp HTTCC
T ss_pred HHHHh
Confidence 98875
No 17
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.1e-59 Score=399.28 Aligned_cols=231 Identities=35% Similarity=0.561 Sum_probs=217.5
Q ss_pred CCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHH
Q 025640 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSD 82 (250)
Q Consensus 3 ~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 82 (250)
++||+++|+|||||||+|||||.+|+.+|+|+|||+++||||||+|+|.++|+++.++ .+||++|+++++|+++|..+|
T Consensus 2 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~~~i~~~~aG~~aD 80 (244)
T 1ryp_G 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPD 80 (244)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHHH
T ss_pred CCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEecCCEEEEEcccHHH
Confidence 5899999999999999999999999999999999999999999999999999998875 499999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEE
Q 025640 83 ANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAA 162 (250)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~ 162 (250)
++.+.+.++.++..|++.++.+++++.+++.+++.+|.|+++++.|||++++||||||+ .||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~ 159 (244)
T 1ryp_G 81 GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGA 159 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEE
Confidence 99999999999999999999999999999999999999999988999999999999997 58999999999999999999
Q ss_pred EEeCChHHHHHHHHhh---CCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEe---CCCCceeEEECCHHHHHHH
Q 025640 163 AIGANNQAAQSILKQD---YKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFL---MPSGKVKYQVCSPEALSKL 236 (250)
Q Consensus 163 a~G~g~~~~~~~L~~~---~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~---~~~~~~~~~~~~~~ei~~~ 236 (250)
|+|+|+.+++++||+. |+++||++||++++++||..+.+++..++++++|++|++ +| ++.+.++++-..
T Consensus 160 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g-----~~~~~~~~~~~~ 234 (244)
T 1ryp_G 160 ATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG-----LHKFVKGDLLQE 234 (244)
T ss_dssp EESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTT-----SEEECCTHHHHH
T ss_pred EECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCC-----eeeeChHHHHHH
Confidence 9999999999999997 999999999999999999999999999999999999997 44 567666676555
Q ss_pred HHHh
Q 025640 237 LVKH 240 (250)
Q Consensus 237 ~~~~ 240 (250)
..+.
T Consensus 235 ~~~~ 238 (244)
T 1ryp_G 235 AIDF 238 (244)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 18
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=2e-60 Score=401.44 Aligned_cols=225 Identities=35% Similarity=0.541 Sum_probs=214.8
Q ss_pred CCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHH
Q 025640 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDA 83 (250)
Q Consensus 4 ~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 83 (250)
+||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.++. ++.+||++|+++++|+++|..+|+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (233)
T 1ryp_F 4 NYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDA 80 (233)
T ss_dssp HHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHH
T ss_pred cccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHH
Confidence 79999999999999999999999999999999999999999999999999975 367999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEE
Q 025640 84 NILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAA 163 (250)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a 163 (250)
+.+.+.++.++..|++.++.+++++.+++.+++.+|.|+|+.+.|||++++||||||+ .||+||.+||+|++.+++++|
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~a 159 (233)
T 1ryp_F 81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTA 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999998 589999999999999999999
Q ss_pred EeCChHHHHHHHHhhCCC--CC--CHHHHHHHHHHHHHHhhcCC-CCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHH
Q 025640 164 IGANNQAAQSILKQDYKD--DI--SREEAVQLALKVLSKTMDST-SLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 237 (250)
Q Consensus 164 ~G~g~~~~~~~L~~~~~~--~~--s~~ea~~l~~~~l~~~~~~~-~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~ 237 (250)
+|+|+.+++++||+.|++ +| |++||+++++++|..+. ++ ..++++++|++|++++ .|++++++||+.++
T Consensus 160 iG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~----~~~~l~~~ei~~~l 233 (233)
T 1ryp_F 160 IGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDT----PFTIYDGEAVAKYI 233 (233)
T ss_dssp ESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTE----EEEEEEGGGGGGGC
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCC----CEEECCHHHHHhhC
Confidence 999999999999999998 99 99999999999999999 67 5789999999999885 38999999997653
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=4.2e-51 Score=349.26 Aligned_cols=225 Identities=20% Similarity=0.255 Sum_probs=196.7
Q ss_pred ccccCCCCccc-ccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHH
Q 025640 9 TTIFSPEGRLY-QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILI 87 (250)
Q Consensus 9 ~~~f~p~G~l~-qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 87 (250)
+..|||||++. |||||.+|+.+|+|+|||+++||||||+|+| +++.+||++|++||+|+++|..+|++.+.
T Consensus 4 p~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~ 75 (259)
T 1q5q_A 4 PYYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLR 75 (259)
T ss_dssp -----CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHH
Confidence 45689999995 9999999999999999999999999999998 35789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC-CCCHHHHHHHHHH-HHhhccccCCCcceeEEEEEEEEe--C-CCCeEEEEECCCCcee-cceE
Q 025640 88 NTARVQAQRYTYAYQE-PMPVEQLVQSLCD-TKQGYTQFGGLRPFGVSFLFAGWD--K-NYGFQLYMSDPSGNYG-GWKA 161 (250)
Q Consensus 88 ~~~~~~~~~~~~~~~~-~~~~~~la~~l~~-~~~~~~~~~~~rP~~~~~iv~G~d--~-~~~~~Ly~vd~~G~~~-~~~~ 161 (250)
+.++.++..+.+.++. +++++.+++.+++ +.|.|+. +.|||+|++|||||| + ..||+||++||+|++. .+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~ 153 (259)
T 1q5q_A 76 RAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--QPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHF 153 (259)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSE
T ss_pred HHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCE
Confidence 9999999999999884 9999999999999 6566663 689999999999999 3 4689999999999999 8899
Q ss_pred EEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhh-----cCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHH
Q 025640 162 AAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTM-----DSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKL 236 (250)
Q Consensus 162 ~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~-----~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~ 236 (250)
+++|++++.++++||+.|+++|+++||++++++||..+. +++. ++++++|++|++++.+ ..|++++++||+.+
T Consensus 154 ~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~-~~~~~l~~~ei~~~ 231 (259)
T 1q5q_A 154 VVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPR-RAFRRIAGTALEQL 231 (259)
T ss_dssp EEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSS-CCEEECCHHHHHTT
T ss_pred EEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCc-CCeEECCHHHHHHH
Confidence 999999999999999999999999999999999999998 7887 9999999999998422 24999999999999
Q ss_pred HHHhCCCCc
Q 025640 237 LVKHGVTQP 245 (250)
Q Consensus 237 ~~~~~~~~~ 245 (250)
+..+.+.+.
T Consensus 232 ~~~~~~~~~ 240 (259)
T 1q5q_A 232 VPAEPAAAS 240 (259)
T ss_dssp SCCC-----
T ss_pred HHHhhhccc
Confidence 987765443
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.3e-49 Score=337.33 Aligned_cols=233 Identities=23% Similarity=0.278 Sum_probs=192.4
Q ss_pred CCCCCCCCccccCCCCcccccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCch
Q 025640 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIM 80 (250)
Q Consensus 1 ~~~~yd~~~~~f~p~G~l~qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~ 80 (250)
|+--|+.++..|..+ ++|||.||+++|+|+|||+++||||||+|+| +++.+||++|++||+|+++|..
T Consensus 1 ~~~~~~~~p~~~~~~----r~EYA~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~ 68 (248)
T 3mi0_A 1 MSFPYFISPEQAMRE----RSELARKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKF 68 (248)
T ss_dssp -------CHHHHHHH----HHHHHHHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECH
T ss_pred CCCCccCCHHHhccc----chHHHHHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCH
Confidence 444455444444433 4899999999999999999999999999999 3478999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHH-HHHhhccccCCCcceeEEEEEEEEeC---CCCeEEEEECCCCc
Q 025640 81 SDANILINTARVQAQRYTYAYQ-EPMPVEQLVQSLC-DTKQGYTQFGGLRPFGVSFLFAGWDK---NYGFQLYMSDPSGN 155 (250)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~-~~~~~~~la~~l~-~~~~~~~~~~~~rP~~~~~iv~G~d~---~~~~~Ly~vd~~G~ 155 (250)
+|++.|.+.++.++..|++.++ .+++++.|++.++ .+.|.|++ +.|||+|++||||||+ .+||+||++||+|+
T Consensus 69 aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~ 146 (248)
T 3mi0_A 69 NEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGS 146 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeE
Confidence 9999999999999999999999 8999999999999 67788887 7899999999999997 36899999999999
Q ss_pred eec-ceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhc------CCCCCCCcEEEEEEEeCCCCceeEEEC
Q 025640 156 YGG-WKAAAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMD------STSLTSDKLELAEVFLMPSGKVKYQVC 228 (250)
Q Consensus 156 ~~~-~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~------~~~~~~~~iei~ii~~~~~~~~~~~~~ 228 (250)
+.. ++++|+|+|+++++++||++|+++|+++||++++++||..+.+ +...++.+++|++|++++. ...|+++
T Consensus 147 ~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~-~~~f~~l 225 (248)
T 3mi0_A 147 IADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRP-RRAFRRI 225 (248)
T ss_dssp EEEESSEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSS-SCCEEEC
T ss_pred EeecccEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCC-cccEEEC
Confidence 994 9999999999999999999999999999999999999999982 2367889999999999862 2469999
Q ss_pred CHHHHHHHHHHhCCCCcccc
Q 025640 229 SPEALSKLLVKHGVTQPAAE 248 (250)
Q Consensus 229 ~~~ei~~~~~~~~~~~~~~~ 248 (250)
+++||+.++..+..++.+.+
T Consensus 226 ~~~ei~~~l~~~~~~~~~~~ 245 (248)
T 3mi0_A 226 TGSALQALLVDQESPQSDGE 245 (248)
T ss_dssp CHHHHHHTC-----------
T ss_pred CHHHHHHHHHHcCCCccccc
Confidence 99999999999987776544
No 21
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.2e-48 Score=326.45 Aligned_cols=210 Identities=24% Similarity=0.392 Sum_probs=194.2
Q ss_pred CccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 025640 31 AGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQL 110 (250)
Q Consensus 31 g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 110 (250)
|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++.++.+++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 78999999999999999999999988777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecce-EEEEeCChHHHHHHHHhhCCCCCCHHHHH
Q 025640 111 VQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK-AAAIGANNQAAQSILKQDYKDDISREEAV 189 (250)
Q Consensus 111 a~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~-~~a~G~g~~~~~~~L~~~~~~~~s~~ea~ 189 (250)
++.+++.+|.+ +.|||++++||||||+..||+||.+||+|++.+++ ++|+|+|+++++++||+.|+++|+++||+
T Consensus 81 a~~l~~~~~~~----~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~ 156 (219)
T 3h4p_a 81 ATLLSNILHSS----RMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGI 156 (219)
T ss_dssp HHHHHHHHHHT----TTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHH
T ss_pred HHHHHHHHHHh----cCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 99999999876 36899999999999986689999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhCCCCccccC
Q 025640 190 QLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAET 249 (250)
Q Consensus 190 ~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~ 249 (250)
+++++||..+.+++..++++++|++|++++ |++++++||+.++.++.+....+++
T Consensus 157 ~la~~al~~~~~rd~~sg~~i~v~vi~~~g-----~~~l~~~ei~~~l~~~~~~~~~~~~ 211 (219)
T 3h4p_a 157 KLALNALKSAMERDTFSGNGISLAVITKDG-----VKIFEDEEIEKILDSMKAKPKKKTT 211 (219)
T ss_dssp HHHHHHHHHHHTSCSSCCSCCCEEEEETTE-----EEECCHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEeCCC-----eEEcCHHHHHHHHHHhhcccccccc
Confidence 999999999999999999999999999986 9999999999999999987777665
No 22
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=5e-47 Score=316.33 Aligned_cols=207 Identities=20% Similarity=0.363 Sum_probs=191.6
Q ss_pred HHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 025640 26 EAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPM 105 (250)
Q Consensus 26 ~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 105 (250)
+++.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++.+++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 57889999999999999999999999998777777899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCH
Q 025640 106 PVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISR 185 (250)
Q Consensus 106 ~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~ 185 (250)
+++.+++.+++.+|.+ +.|||++++|||||| .||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||+
T Consensus 83 ~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~ 156 (217)
T 1yar_H 83 PIEAVATLLSNMLNQV----KYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTV 156 (217)
T ss_dssp CHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred CHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCH
Confidence 9999999999999875 378999999999999 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEe-CCCCceeEEECCHHHHHHHHHHhCCC
Q 025640 186 EEAVQLALKVLSKTMDSTSLTSDKLELAEVFL-MPSGKVKYQVCSPEALSKLLVKHGVT 243 (250)
Q Consensus 186 ~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~-~~~~~~~~~~~~~~ei~~~~~~~~~~ 243 (250)
+||++++++||..+.+++..++++++|++|++ ++ ++.++++||+.++..+...
T Consensus 157 eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g-----~~~~~~~ei~~~~~~~~~~ 210 (217)
T 1yar_H 157 DEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDG-----YVQLPTDQIESRIRKLGLI 210 (217)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTE-----EEECCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCC-----EEEcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 54 8999999999999988754
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.8e-46 Score=309.77 Aligned_cols=201 Identities=26% Similarity=0.430 Sum_probs=191.3
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+.+.++.++..|++.++.+++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998777777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecce-EEEEeCChHHHHHHHHhhCCCCCCHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK-AAAIGANNQAAQSILKQDYKDDISREEAVQ 190 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~-~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~ 190 (250)
+.+++.+|.+ +.|||++++||||||+ .||+||.+||+|++.+++ ++|+|+|+++++++||+.|+++||++||++
T Consensus 81 ~~l~~~~~~~----r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~ 155 (202)
T 1j2q_H 81 TLTSNLLNSY----RYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVE 155 (202)
T ss_dssp HHHHHHHHHT----TTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHhh----CCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHH
Confidence 9999999875 3789999999999998 589999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhCC
Q 025640 191 LALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGV 242 (250)
Q Consensus 191 l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~~ 242 (250)
++++||..+.+++..++++++|++|++++ ++.++++||+.++.++++
T Consensus 156 la~~al~~~~~~d~~s~~~i~v~vi~~~g-----~~~l~~~ei~~~~~~~~~ 202 (202)
T 1j2q_H 156 LAVRAIYSAMKRDSASGDGIDVVKITEDE-----FYQYSPEEVEQILAKFRK 202 (202)
T ss_dssp HHHHHHHHHHTTCTTSCSCEEEEEECSSC-----EEECHHHHHHHHGGGTTC
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEEeCCC-----eEEeCHHHHHHHHHHhhC
Confidence 99999999999999999999999999986 899999999999987753
No 24
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.1e-46 Score=326.45 Aligned_cols=218 Identities=21% Similarity=0.231 Sum_probs=200.0
Q ss_pred HHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCC
Q 025640 24 AMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQE 103 (250)
Q Consensus 24 a~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 103 (250)
|.+|+.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++.++.
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 88999999999999999999999999999987777788999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCC-----eEEEEECCCCceecc--eEEEEeCChHHHHHHHH
Q 025640 104 PMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYG-----FQLYMSDPSGNYGGW--KAAAIGANNQAAQSILK 176 (250)
Q Consensus 104 ~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~-----~~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~L~ 176 (250)
+++++.+++.|++++|.++++. +|||+|++||||||++++ |+||.+||+|++.++ +++|+|+|+.+++++||
T Consensus 138 ~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le 216 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALK 216 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHH
Confidence 9999999999999999888754 899999999999998656 999999999999998 89999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCc--E-----EEEEEEeCCCCceeEEECCHHHHHHHHHHhCCCCccc
Q 025640 177 QDYKDDISREEAVQLALKVLSKTMDSTSLTSDK--L-----ELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAA 247 (250)
Q Consensus 177 ~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~--i-----ei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~ 247 (250)
+.|+++|+++||++++++||..+.++|..+++. + +|++|++++ +++++++|++.++..+.+.+.+.
T Consensus 217 ~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g-----~~~l~~~ei~~~l~~i~~~~~~~ 289 (294)
T 1q5r_H 217 KIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-----AVHVSEETTSELARRIVAERTEQ 289 (294)
T ss_dssp HHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-----EEECCHHHHHHHHHHHCC-----
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCC-----EEEcCHHHHHHHHHHHHHHhhhC
Confidence 999999999999999999999999998887654 6 999999876 89999999999999997766543
No 25
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=5.5e-47 Score=327.22 Aligned_cols=221 Identities=16% Similarity=0.205 Sum_probs=193.5
Q ss_pred CCCCccccc------chHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHH
Q 025640 13 SPEGRLYQV------EYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANIL 86 (250)
Q Consensus 13 ~p~G~l~qv------eya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 86 (250)
+|+.-+-+. .++.+++.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.+
T Consensus 51 ~p~~~~~~~~~~~~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l 130 (287)
T 3nzj_K 51 SPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFW 130 (287)
T ss_dssp -------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHH
T ss_pred CHHHHHHHhcccccccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHH
Confidence 455555443 26788999999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeC
Q 025640 87 INTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGA 166 (250)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~ 166 (250)
.+.++.++..|++.++++++++.+++.+++++|.+++ +||++++||||||+.+||+||.+||.|++.+++++|+|+
T Consensus 131 ~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGs 206 (287)
T 3nzj_K 131 ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGS 206 (287)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEEST
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEec
Confidence 9999999999999999999999999999999998865 499999999999976799999999999999999999999
Q ss_pred ChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhCC
Q 025640 167 NNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGV 242 (250)
Q Consensus 167 g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~~ 242 (250)
|+.+++++||+.|+++||++||++++++||..+.+||..++++++|++|+++| |++++++||+.++.++.+
T Consensus 207 gs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg-----~~~l~~~ev~~~l~~~~e 277 (287)
T 3nzj_K 207 GQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDG-----WIYHGNHDVGELFWKVKE 277 (287)
T ss_dssp THHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-----EEEEEEEEHHHHHHHHHH
T ss_pred chHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCC-----EEEeCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997 899999999998877654
No 26
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.1e-46 Score=326.13 Aligned_cols=235 Identities=16% Similarity=0.174 Sum_probs=176.5
Q ss_pred CCCCCCccccCCCCcc-----cc--cchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEE
Q 025640 3 RRYDSRTTIFSPEGRL-----YQ--VEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACA 75 (250)
Q Consensus 3 ~~yd~~~~~f~p~G~l-----~q--veya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~ 75 (250)
.+|+..+....||.-. +| +|||++ +.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+
T Consensus 23 ~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~ 101 (291)
T 2jay_A 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATG 101 (291)
T ss_dssp ------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEE
T ss_pred ccHHHHhhhcChhhccccccccCcCcccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEE
Confidence 3566677777776432 22 699999 999999999999999999999999999888788899999999999999
Q ss_pred EeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCC-----eEEEEE
Q 025640 76 VAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYG-----FQLYMS 150 (250)
Q Consensus 76 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~-----~~Ly~v 150 (250)
++|..+|++.+.+.++.++..|++.++.+++++.+++.+++++|.+++ ..+|||+|++||||||+.++ |+||.+
T Consensus 102 ~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~i 180 (291)
T 2jay_A 102 IAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVSF 180 (291)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEEE
T ss_pred EcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEEE
Confidence 999999999999999999999999999999999999999999998865 35789999999999998656 999999
Q ss_pred CCCCcee--cceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCc--E-----EEEEEEeCCCC
Q 025640 151 DPSGNYG--GWKAAAIGANNQAAQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDK--L-----ELAEVFLMPSG 221 (250)
Q Consensus 151 d~~G~~~--~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~--i-----ei~ii~~~~~~ 221 (250)
||+|++. +++++|+|+|+.+++++||+.|+++|+++||++++++||..+.++|..+++. + +|++|++++
T Consensus 181 Dp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg-- 258 (291)
T 2jay_A 181 DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG-- 258 (291)
T ss_dssp CTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTE--
T ss_pred CCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCC--
Confidence 9999998 8999999999999999999999999999999999999999999998877764 2 699999986
Q ss_pred ceeEEECCHHHHHHHHHHhCCCC
Q 025640 222 KVKYQVCSPEALSKLLVKHGVTQ 244 (250)
Q Consensus 222 ~~~~~~~~~~ei~~~~~~~~~~~ 244 (250)
+++++++||+.++..+.+.+
T Consensus 259 ---~~~l~~~ei~~~~~~~~~~~ 278 (291)
T 2jay_A 259 ---AVDVPESRIAELARAIIESR 278 (291)
T ss_dssp ---EEECCHHHHHHHHHHC----
T ss_pred ---eEEcCHHHHHHHHHHHHHhh
Confidence 89999999999999886554
No 27
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=6.3e-46 Score=306.90 Aligned_cols=203 Identities=19% Similarity=0.273 Sum_probs=192.0
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+.+.++.++..|++.++.+++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998777777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
+.+++.+|.+++ +|+++++||||||+ .||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~r~----~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l 155 (204)
T 1iru_L 81 KLLANMVYQYKG----MGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDL 155 (204)
T ss_dssp HHHHHHHHTTTT----SCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred HHHHHHHHHhCC----CCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHH
Confidence 999999998754 58999999999998 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhCCCC
Q 025640 192 ALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQ 244 (250)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~~~~ 244 (250)
+++||..+.+|+..++++++|++|++++ ++.++++|++.++..+.+.+
T Consensus 156 ~~~al~~~~~rd~~s~~~i~v~vi~~~g-----~~~l~~~ei~~~~~~~~~~~ 203 (204)
T 1iru_L 156 ARRAIYQATYRDAYSGGAVNLYHVREDG-----WIRVSSDNVADLHEKYSGST 203 (204)
T ss_dssp HHHHHHHHHHHBTTCCSEEEEEEECSSC-----EEEEEEEEHHHHHHHHTC--
T ss_pred HHHHHHHHHHhCccCCCceEEEEEeCCc-----eEEeCHHHHHHHHHHhccCC
Confidence 9999999999999999999999999876 89999999999999986543
No 28
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=4e-46 Score=309.85 Aligned_cols=202 Identities=15% Similarity=0.213 Sum_probs=192.0
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+.+.++.++..|++.++.+++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999999999999999999998777777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
+.+++.+|.+++ .||++++||||||++.+|+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~----~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 156 (212)
T 1ryp_L 81 KILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL 156 (212)
T ss_dssp HHHHHHHHHTTT----SCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhCC----CCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 999999999876 3999999999999656899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhCC
Q 025640 192 ALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGV 242 (250)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~~ 242 (250)
+++||..+.+|+..++++++|++|++++ +++++++||+.++.++.+
T Consensus 157 a~~al~~~~~rd~~s~~~i~v~vi~~~g-----~~~~~~~ei~~~~~~~~~ 202 (212)
T 1ryp_L 157 GKRSILAAAHRDAYSGGSVNLYHVTEDG-----WIYHGNHDVGELFWKVKE 202 (212)
T ss_dssp HHHHHHHHHHHBTTCCSEEEEEEEETTE-----EEEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCCc-----eEEECHHHHHHHHHHHHH
Confidence 9999999999999999999999999876 899999999999877754
No 29
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.1e-45 Score=311.80 Aligned_cols=211 Identities=22% Similarity=0.246 Sum_probs=195.4
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++.++.+++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 58999999999999999999998777777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCC-----eEEEEECCCCceecc--eEEEEeCChHHHHHHHHhhCCCCCC
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYG-----FQLYMSDPSGNYGGW--KAAAIGANNQAAQSILKQDYKDDIS 184 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~-----~~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~L~~~~~~~~s 184 (250)
+.|++++|.++++. +|||++++||||||++++ |+||.+||+|++.++ +++|+|+|+.+++++||+.|+++||
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 159 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSD 159 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCC
Confidence 99999999988764 899999999999998657 999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCc--E-----EEEEEEeCCCCceeEEECCHHHHHHHHHHhCCCCcccc
Q 025640 185 REEAVQLALKVLSKTMDSTSLTSDK--L-----ELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAE 248 (250)
Q Consensus 185 ~~ea~~l~~~~l~~~~~~~~~~~~~--i-----ei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~ 248 (250)
++||++++++||..+.+++..+++. + +|++|++++ ++.++++|+++++..+.+.+.+++
T Consensus 160 ~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g-----~~~l~~~ei~~~~~~~~~~~~~~~ 225 (235)
T 1q5q_H 160 EETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-----AVHVSEETTSELARRIVAERTEQG 225 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-----EEECCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCC-----eEEeCHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999887753 2 999999876 899999999999998866555443
No 30
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=5.6e-46 Score=307.42 Aligned_cols=200 Identities=20% Similarity=0.291 Sum_probs=189.4
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999777777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
+.+++.+|.+++ ||++++||||||+++||+||.+||.|++.+++++++|+|+.+++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l 155 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQF 155 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999998864 999999999999866899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 025640 192 ALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVK 239 (250)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~ 239 (250)
+++||..+.+++..++++++|++|++++ ..++.++++||+.+++.
T Consensus 156 ~~~al~~~~~~d~~s~~~i~v~vi~~~g---~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 156 TANALALAMERDGSSGGVIRLAAIAESG---VERQVLLGDQIPKFAVA 200 (205)
T ss_dssp HHHHHHHHHHHBTTCCSCEEEEEEETTE---EEEEEECGGGSCCCCCC
T ss_pred HHHHHHHHHHhccccCCcEEEEEEeCCC---eEEEEeChHHhhHHHhh
Confidence 9999999999999999999999999986 35789999999877654
No 31
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.1e-46 Score=317.49 Aligned_cols=209 Identities=13% Similarity=0.121 Sum_probs=195.7
Q ss_pred HHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHH-----
Q 025640 25 MEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTY----- 99 (250)
Q Consensus 25 ~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 99 (250)
.+++.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 367899999999999999999999999998888778899999999999999999999999999999999999998
Q ss_pred HhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhC
Q 025640 100 AYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDY 179 (250)
Q Consensus 100 ~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~ 179 (250)
.++.+++++.+++.+++.++. ++.+.|||++++||||||++++|+||.+||.|++.+++++++|+|+.+++++||+.|
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~--~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQ--RRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHH--HHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred hcCCCCCHHHHHHHHHHHHHH--hcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 899999999999999999854 555689999999999999866899999999999999999999999999999999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeC-CCCceeEEECCHHHHHHH-HHHh
Q 025640 180 KD-----DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLM-PSGKVKYQVCSPEALSKL-LVKH 240 (250)
Q Consensus 180 ~~-----~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~-~~~~~~~~~~~~~ei~~~-~~~~ 240 (250)
++ +||++||++++++||..+.+|+..++++++|++|+++ + ++.++++||+.+ |.-.
T Consensus 160 ~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g-----~~~~~~~~i~~~~w~~~ 222 (233)
T 1ryp_N 160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-----LTFKKNLQVENMKWDFA 222 (233)
T ss_dssp SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-----EEEEEEEECCSCCCGGG
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCC-----eEEcChHhcccccchhh
Confidence 99 9999999999999999999999999999999999998 5 889999998877 6433
No 32
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=2.5e-46 Score=312.51 Aligned_cols=206 Identities=13% Similarity=0.111 Sum_probs=193.4
Q ss_pred HHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHH-HhCC
Q 025640 25 MEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTY-AYQE 103 (250)
Q Consensus 25 ~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~ 103 (250)
.+|+.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++ .++.
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 368899999999999999999999999998888778899999999999999999999999999999999999998 8999
Q ss_pred CCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCC--
Q 025640 104 PMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKD-- 181 (250)
Q Consensus 104 ~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~-- 181 (250)
+++++.+++.+++.++. ++.+.|||++++||||||+. +|+||.+||.|++.+++++++|+|+++++++||+.|++
T Consensus 82 ~~~v~~la~~l~~~ly~--~r~~~~P~~v~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 158 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYS--RRSKMNPLWNTMVIGGYADG-ESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQP 158 (219)
T ss_dssp CCCHHHHHHHHHHHHHH--HHHTTCCCCEEEEEEEEETT-EEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCS
T ss_pred CCCHHHHHHHHHHHHHH--hcccCCCceEEEEEEEEECC-CCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCC
Confidence 99999999999999864 45578999999999999984 99999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHH
Q 025640 182 DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLV 238 (250)
Q Consensus 182 ~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~ 238 (250)
+||++||++++++||..+.+++..++++++|++|++++ ++.++++||+..|.
T Consensus 159 ~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g-----~~~~~~~~i~~~~~ 210 (219)
T 1iru_N 159 VLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG-----VEIEGPLSTETNWD 210 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-----EEEEEEECCCCCCG
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC-----EEEcCCeeccchhh
Confidence 99999999999999999999999999999999999986 78999888876653
No 33
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=9.6e-45 Score=300.04 Aligned_cols=189 Identities=16% Similarity=0.268 Sum_probs=181.4
Q ss_pred HHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCC
Q 025640 25 MEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEP 104 (250)
Q Consensus 25 ~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 104 (250)
.+++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++.+++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 5889999999999999999999999999997777778899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCC
Q 025640 105 MPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDIS 184 (250)
Q Consensus 105 ~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s 184 (250)
++++.+++.+++.+|.++++ |++++||||||+..||+||.+||.|++.+++++|+|+|+.+++++||+.|+++||
T Consensus 82 ~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s 156 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMS 156 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCC
T ss_pred CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCC
Confidence 99999999999999998652 9999999999986689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 185 REEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 185 ~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
++||++++++||..+.+|+..++++++|++|++++
T Consensus 157 ~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g 191 (205)
T 1ryp_H 157 KEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAG 191 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCC
Confidence 99999999999999999999999999999999987
No 34
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2.6e-44 Score=299.06 Aligned_cols=188 Identities=19% Similarity=0.264 Sum_probs=179.8
Q ss_pred hcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 025640 28 IGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPV 107 (250)
Q Consensus 28 ~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 107 (250)
+++|+|+|||+++||||||+|+|.++|+++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++.++.++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 57999999999999999999999999999887889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhh---------
Q 025640 108 EQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQD--------- 178 (250)
Q Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~--------- 178 (250)
+.+++.+++.++ +++ .|||++++||||||++++|+||.+||.|++.+++++|+|+|+.+++++||+.
T Consensus 86 ~~la~~l~~~~y--~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~ 161 (213)
T 1iru_M 86 GAIAAMLSTILY--SRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNV 161 (213)
T ss_dssp HHHHHHHHHHHH--HTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSC
T ss_pred HHHHHHHHHHHH--hhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccccc
Confidence 999999999985 443 7999999999999986679999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 179 YKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 179 ~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
|+++||++||++++++||..+.+++..++++++|++|++++
T Consensus 162 ~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 202 (213)
T 1iru_M 162 EHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG 202 (213)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCC
Confidence 88999999999999999999999999999999999999987
No 35
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1.7e-44 Score=297.01 Aligned_cols=192 Identities=19% Similarity=0.215 Sum_probs=181.5
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.++|+++.+++.+||++|++|++|+++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 78999999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeC-CCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDK-NYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQ 190 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~-~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~ 190 (250)
+.+++.++.+++. .+||++++||||||+ +++|+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++
T Consensus 82 ~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~ 159 (198)
T 1ryp_K 82 SFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLD 159 (198)
T ss_dssp HHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHH
Confidence 9999999887642 359999999999997 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCH
Q 025640 191 LALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSP 230 (250)
Q Consensus 191 l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~ 230 (250)
++++||..+.+++..++++++|++|++++ ++.+++
T Consensus 160 l~~~al~~~~~~d~~s~~~i~v~vi~~~g-----~~~~~~ 194 (198)
T 1ryp_K 160 LLKLCVQELEKRMPMDFKGVIVKIVDKDG-----IRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHCSBCCCCEEEEEEETTE-----EEEECC
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEcCCC-----EEEecc
Confidence 99999999999999999999999999986 666654
No 36
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=6.1e-46 Score=318.51 Aligned_cols=215 Identities=13% Similarity=0.114 Sum_probs=197.6
Q ss_pred ccchHHHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHH
Q 025640 20 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTY 99 (250)
Q Consensus 20 qveya~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 99 (250)
..+.+.+++.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.|.+.++.++..|++
T Consensus 30 ~~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~ 109 (266)
T 1g0u_M 30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAY 109 (266)
T ss_dssp ----CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhh
Confidence 35677889999999999999999999999999998888778899999999999999999999999999999999999998
Q ss_pred -----HhCCCCCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHH
Q 025640 100 -----AYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSI 174 (250)
Q Consensus 100 -----~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~ 174 (250)
.++.+++++.+++.+++.++. ++.+.|||++++||||||++++|+||.+||.|++.+++++|+|+|+.+++++
T Consensus 110 ~~~~~~~~~~~~v~~la~~l~~~ly~--~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 187 (266)
T 1g0u_M 110 DNPLADAEEALEPSYIFEYLATVMYQ--RRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPL 187 (266)
T ss_dssp TCTTTTTTTSCCHHHHHHHHHHHHHH--HHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHH
T ss_pred ccchhhcCCCCCHHHHHHHHHHHHHH--hccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHH
Confidence 899999999999999999854 5556899999999999998668999999999999999999999999999999
Q ss_pred HHhhCCC-----CCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeC-CCCceeEEECCHHHHHHH-HHHhC
Q 025640 175 LKQDYKD-----DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLM-PSGKVKYQVCSPEALSKL-LVKHG 241 (250)
Q Consensus 175 L~~~~~~-----~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~-~~~~~~~~~~~~~ei~~~-~~~~~ 241 (250)
||+.|++ +||++||++++++||..+.+|+..++++++|++|+++ + ++.++++||+.+ |.-.+
T Consensus 188 Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g-----~~~~~~~ei~~~~w~~~~ 256 (266)
T 1g0u_M 188 LRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-----LTFKKNLQVENMKWDFAK 256 (266)
T ss_dssp HTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-----EEEEEEEECCCCCCGGGG
T ss_pred HHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCC-----eEEcCHHHhhhhhhhHHh
Confidence 9999999 9999999999999999999999999999999999998 5 889999988877 64433
No 37
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=2.4e-44 Score=302.93 Aligned_cols=194 Identities=20% Similarity=0.291 Sum_probs=184.5
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.++|+++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 68999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
+.+++.++.+ .+||++++||||||+ .||+||.+||.|++.+++++|+|+|+.+++++||+.|+++|+++||+++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQEL 154 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHH
Confidence 9999998865 369999999999998 4899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHH
Q 025640 192 ALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKL 236 (250)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~ 236 (250)
+++||..+.++|..++++++|++|+++| ++.+.+++++.-
T Consensus 155 a~~al~~~~~~D~~sg~~iev~vi~~dg-----~~~l~~~~i~~~ 194 (234)
T 3unf_H 155 LVEAITAGILSDLGSGGNVDACVITAGG-----AKLQRALSTPTE 194 (234)
T ss_dssp HHHHHHHHHHHBTTCCSCEEEEEEESSC-----EEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCCCcEEEEEEECCC-----EEEeCceecccc
Confidence 9999999999999999999999999997 788888887643
No 38
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.5e-43 Score=292.92 Aligned_cols=188 Identities=11% Similarity=0.158 Sum_probs=177.4
Q ss_pred hcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 025640 28 IGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPV 107 (250)
Q Consensus 28 ~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 107 (250)
+.+|+|+|||+++||||||+|+|.++|+++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++.++.++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 47899999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCcceeEEEEEEEEeC-CCCeEEEEECCCCceecc-eEEEEeCChHHHHHHHHhhCCCCCCH
Q 025640 108 EQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK-NYGFQLYMSDPSGNYGGW-KAAAIGANNQAAQSILKQDYKDDISR 185 (250)
Q Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~-~~~~~Ly~vd~~G~~~~~-~~~a~G~g~~~~~~~L~~~~~~~~s~ 185 (250)
+.+++.+++.++ +++ ..||++++||||||+ +++|+||.+||.|++.++ +++++|+|+++++++||+.|+++||+
T Consensus 85 ~~la~~l~~~~y--~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 160 (205)
T 1iru_J 85 YTLMSMVANLLY--EKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp HHHHHHHHHHHH--TTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHHH--Hhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence 999999999984 444 349999999999996 468999999999998654 67999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 186 EEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 186 ~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
+||++++++||..+.+++..++++++|++|++++
T Consensus 161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 194 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK 194 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSB
T ss_pred HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCC
Confidence 9999999999999999999999999999999987
No 39
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2.9e-43 Score=290.89 Aligned_cols=188 Identities=17% Similarity=0.194 Sum_probs=177.2
Q ss_pred HhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 025640 27 AIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMP 106 (250)
Q Consensus 27 a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 106 (250)
.+.+|+|+|||+++||||||+|+|.++++++.+++.+||++|+ +++|+++|..+|++.+.+.++.++..|++.++.+++
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 82 (204)
T 1ryp_J 4 SSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIE 82 (204)
T ss_dssp GGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 4679999999999999999999999999999888899999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeC-CCCeEEEEECCCCceecc-eEEEEeCChHHHHHHHHhhCCCCCC
Q 025640 107 VEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK-NYGFQLYMSDPSGNYGGW-KAAAIGANNQAAQSILKQDYKDDIS 184 (250)
Q Consensus 107 ~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~-~~~~~Ly~vd~~G~~~~~-~~~a~G~g~~~~~~~L~~~~~~~~s 184 (250)
++.+++.+++.+ |+++ ..||++++||||||+ +++|+||.+||.|++.++ +++++|+|+++++++||+.|+++||
T Consensus 83 v~~la~~l~~~~--y~~~--~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s 158 (204)
T 1ryp_J 83 PETFTQLVSSSL--YERR--FGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLE 158 (204)
T ss_dssp HHHHHHHHHHHH--HTTT--TSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCC
T ss_pred HHHHHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcC
Confidence 999999999998 4554 349999999999996 468999999999998655 6799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 185 REEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 185 ~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
++||++++++||..+.+++..++++++|++|++++
T Consensus 159 ~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 193 (204)
T 1ryp_J 159 PEDLFETISQALLNAADRDALSGWGAVVYIIKKDE 193 (204)
T ss_dssp HHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCC
Confidence 99999999999999999999999999999999987
No 40
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.1e-43 Score=303.13 Aligned_cols=189 Identities=19% Similarity=0.265 Sum_probs=175.6
Q ss_pred HHHhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCC
Q 025640 25 MEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEP 104 (250)
Q Consensus 25 ~~a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 104 (250)
.||+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++.++++
T Consensus 23 ~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 102 (261)
T 3nzj_H 23 PKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSRE 102 (261)
T ss_dssp -------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCC
Confidence 58999999999999999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCC
Q 025640 105 MPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDIS 184 (250)
Q Consensus 105 ~~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s 184 (250)
++++.+++.+++.++.+ .+||++++||||||+ .||+||.+||.|++.+++++|+|+|+.+++++||+.|+++|+
T Consensus 103 ~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 176 (261)
T 3nzj_H 103 PRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLT 176 (261)
T ss_dssp CCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCC
T ss_pred CCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCC
Confidence 99999999999988764 379999999999998 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 185 REEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 185 ~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
++||++++++||..+.++|..++++++|++|++++
T Consensus 177 ~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg 211 (261)
T 3nzj_H 177 KEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGK 211 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTS
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCC
Confidence 99999999999999999999999999999999987
No 41
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.5e-43 Score=296.33 Aligned_cols=189 Identities=20% Similarity=0.298 Sum_probs=179.9
Q ss_pred HhcCCccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhC-CCC
Q 025640 27 AIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQ-EPM 105 (250)
Q Consensus 27 a~~~g~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 105 (250)
.+++|+|+|||+++||||||+|+|.++|+++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++.++ .++
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1ryp_M 5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKL 84 (222)
T ss_dssp CCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4689999999999999999999999999988888999999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhh-------
Q 025640 106 PVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQD------- 178 (250)
Q Consensus 106 ~~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~------- 178 (250)
+++.+++.+++.++. + +.+||++++||||||++++|+||.+||.|++.+++++|+|+|+.+++++||+.
T Consensus 85 ~v~~la~~l~~~ly~--~--r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 85 SINSAARNIQHLLYG--K--RFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp CHHHHHHHHHHHHHT--T--TTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred CHHHHHHHHHHHHHh--c--CCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 999999999999864 3 26899999999999986679999999999999999999999999999999998
Q ss_pred ----------CCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 179 ----------YKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 179 ----------~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
|+++||++||++++++||..+.+++..++++++|++|++++
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g 211 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDG 211 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCC
Confidence 88999999999999999999999999999999999999987
No 42
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=7.6e-44 Score=293.30 Aligned_cols=196 Identities=18% Similarity=0.255 Sum_probs=182.9
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++.++.+++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999777778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecc-eEEEEeCChHHHHHHHHhhCCCCCCHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW-KAAAIGANNQAAQSILKQDYKDDISREEAVQ 190 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~-~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~ 190 (250)
+++++.++.+ .|||++++||||||+.++|+||. |+|++.++ +++++|+|+++++++||+.|+++||++||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~ 153 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRR 153 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHH
Confidence 9999999875 36999999999999867899999 99997655 5666799999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHH
Q 025640 191 LALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 237 (250)
Q Consensus 191 l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~ 237 (250)
++++||..+.+++..++++++|++|++++ ..++.++++||+.++
T Consensus 154 la~~al~~~~~~d~~sg~~i~v~vi~~~g---~~~~~l~~~ei~~~~ 197 (199)
T 3unf_N 154 FTTNAITLAMNRDGSSGGVIYLVTITAAG---VDHRVILGDELPKFY 197 (199)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEEEECSSC---EEEEEECGGGSCCCC
T ss_pred HHHHHHHHHHHhccccCCCeEEEEEcCCC---EEEEEcCcccCcccc
Confidence 99999999999999999999999999987 568999999997654
No 43
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=8.7e-43 Score=287.43 Aligned_cols=191 Identities=21% Similarity=0.238 Sum_probs=176.3
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 78999999999999999999998777777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
+++++.+....+ ..+||++++||||||++++|+||.+||.|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 82 ~~~~~~l~~~~~--~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 159 (201)
T 1iru_K 82 NFTRRNLADCLR--SRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVEL 159 (201)
T ss_dssp HHHHHHHHHHHT--SSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHH
Confidence 998875521111 237999999999999866899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECC
Q 025640 192 ALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCS 229 (250)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~ 229 (250)
+++||+.+.+|+..++++++|++|+++| ++.++
T Consensus 160 ~~~al~~a~~rd~~sg~~i~v~vi~~~g-----~~~~~ 192 (201)
T 1iru_K 160 LRKCLEELQKRFILNLPTFSVRIIDKNG-----IHDLD 192 (201)
T ss_dssp HHHHHHHHHHTBCBCCCCEEEEEEETTE-----EECCC
T ss_pred HHHHHHHHHhhccccCCceEEEEEcCCC-----eEEee
Confidence 9999999999999999999999999987 55554
No 44
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=3.1e-42 Score=288.31 Aligned_cols=182 Identities=19% Similarity=0.272 Sum_probs=175.4
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.++|+++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
+.+++.++.+ .|||++++||||||+ .||+||.+||.|++.+++++|+|+|+.+++++||+.|+++||++||+++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKL 154 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHH
Confidence 9999998865 479999999999998 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEEeCC
Q 025640 192 ALKVLSKTMDSTSLTSDKLELAEVFLMP 219 (250)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~iei~ii~~~~ 219 (250)
+++||+.+.++|..++++++|++|++++
T Consensus 155 a~~al~~~~~~d~~sg~~i~v~vi~~~g 182 (222)
T 1ryp_I 155 ASDAIQAGIWNDLGSGSNVDVCVMEIGK 182 (222)
T ss_dssp HHHHHHHHHHHCTTCCSCEEEEEEETTS
T ss_pred HHHHHHHHHhccccCCCcEEEEEEECCC
Confidence 9999999999999999999999999886
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=6.3e-42 Score=288.49 Aligned_cols=189 Identities=18% Similarity=0.275 Sum_probs=178.6
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEecCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 111 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 111 (250)
+|+|||+++||||||+|+|.++|+++.+++.+||++|+++++|+++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 58999999999999999999999998878899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHH
Q 025640 112 QSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQL 191 (250)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 191 (250)
+.+++.++.++ +||++++||||||+ .||+||.+||.|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~l~~~~-----~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (234)
T 1iru_I 81 RMLKQMLFRYR-----GYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNL 154 (234)
T ss_dssp HHHHHHHHHTT-----TCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTH
T ss_pred HHHHHHHHhcC-----CCCceeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHH
Confidence 99999988763 59999999999998 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHH
Q 025640 192 ALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPE 231 (250)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ 231 (250)
+++||..+.+++..++++++|++|++++ ++.+.+.
T Consensus 155 a~~al~~a~~~d~~sg~~i~v~vi~k~g-----~~~~~~~ 189 (234)
T 1iru_I 155 VSEAIAAGIFNDLGSGSNIDLCVISKNK-----LDFLRPY 189 (234)
T ss_dssp HHHHHHHHHHHCTTCCSCEEEEEEETTE-----EECCSEE
T ss_pred HHHHHHHHHHhcccCCCCEEEEEEECCc-----EEEEcce
Confidence 9999999999999999999999999986 5555543
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=9.8e-36 Score=241.16 Aligned_cols=170 Identities=19% Similarity=0.209 Sum_probs=151.9
Q ss_pred cCCccEEEEEeCCEEEEEEEcccCCCcc-cccCCcCcEEEe-cCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 025640 29 GNAGSAIGILSKDGVVLVGEKKVTSKLL-QTSTSTEKMYKI-DDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMP 106 (250)
Q Consensus 29 ~~g~t~igi~~~dgvvla~d~~~~~~~~-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 106 (250)
.+|+|+|||+++||||||+|+|.++|.+ +.+++.+||++| +++++|+++|..+|++.+.+.++.++..|+ +
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---- 75 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---- 75 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T----
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C----
Confidence 6799999999999999999999999876 777899999999 999999999999999999999999999876 2
Q ss_pred HHHHHHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceec--ceEEEEeCChHHHHHHHHhhCCC---
Q 025640 107 VEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGG--WKAAAIGANNQAAQSILKQDYKD--- 181 (250)
Q Consensus 107 ~~~la~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~--~~~~a~G~g~~~~~~~L~~~~~~--- 181 (250)
.+.+.++++.+.+++....|||++++||+ | +|+||.+||.|++.+ ++++|+|+|+.+++++||+.|++
T Consensus 76 --~~~~~~~~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~ 148 (180)
T 2z3b_A 76 --NLKRAAVELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGE 148 (180)
T ss_dssp --CHHHHHHHHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGG
T ss_pred --ChHHHHHHHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCC
Confidence 23333344445556667789999999999 3 699999999999997 59999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEE
Q 025640 182 DISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 215 (250)
Q Consensus 182 ~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii 215 (250)
+|+.+| ++.+||+.+.+||..++++++|.+|
T Consensus 149 ~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 149 SMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp GCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 999999 4789999999999999999999988
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=4.2e-35 Score=235.58 Aligned_cols=167 Identities=19% Similarity=0.216 Sum_probs=147.4
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEe-cCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKI-DDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQL 110 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 110 (250)
+|+|||+++||||||+|+|.++|.++.+++.+||++| +++++++++|..+|++.+.+.++.++..|+.. .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 5899999999999999999999877777889999999 99999999999999999999999999987633 24444
Q ss_pred HHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecce--EEEEeCChHHHHHHHHhhCC-CCCCHHH
Q 025640 111 VQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK--AAAIGANNQAAQSILKQDYK-DDISREE 187 (250)
Q Consensus 111 a~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~--~~a~G~g~~~~~~~L~~~~~-~~~s~~e 187 (250)
++. .+.++++.+.|||++++|++ | +|+||.+||.|++.+++ ++|+|+|+++++++||+.|+ ++||.
T Consensus 76 ~~l----~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~-- 144 (171)
T 1m4y_A 76 VEL----AKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA-- 144 (171)
T ss_dssp HHH----HHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH--
T ss_pred HHH----HHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH--
Confidence 443 33445555678999999988 4 79999999999999987 99999999999999999999 99996
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcEEEEEE
Q 025640 188 AVQLALKVLSKTMDSTSLTSDKLELAEV 215 (250)
Q Consensus 188 a~~l~~~~l~~~~~~~~~~~~~iei~ii 215 (250)
++++++||+.+.+||..++++++|.++
T Consensus 145 -~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 -REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp -HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred -HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 678999999999999999999999864
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=8.4e-35 Score=234.46 Aligned_cols=168 Identities=16% Similarity=0.154 Sum_probs=147.6
Q ss_pred ccEEEEEeCCEEEEEEEcccCCCcccccCCcCcEEEe-cCceEEEEeCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 025640 32 GSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKI-DDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQL 110 (250)
Q Consensus 32 ~t~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 110 (250)
+|+|||+++||||||+|+|.++|.++.+++.+||++| ++|++++++|..+|++.+.+.++.++..|+. +.
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~--- 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HL--- 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CH---
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cH---
Confidence 5899999999999999999999977777899999999 9999999999999999999999999998764 33
Q ss_pred HHHHHHHHhhccccCCCcceeEEEEEEEEeCCCCeEEEEECCCCceecce---EEEEeCChHHHHHHHHhhCC-CCCCHH
Q 025640 111 VQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK---AAAIGANNQAAQSILKQDYK-DDISRE 186 (250)
Q Consensus 111 a~~l~~~~~~~~~~~~~rP~~~~~iv~G~d~~~~~~Ly~vd~~G~~~~~~---~~a~G~g~~~~~~~L~~~~~-~~~s~~ 186 (250)
.+.++.+.+.++++.+.||+ .++++|+| +|+||.+||+|++.+++ ++|+|+|+++++++||+.|+ ++|+.+
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~ 146 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH 146 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH
Confidence 33344444445566567775 46777886 69999999999999988 99999999999999999999 999954
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEEEEE
Q 025640 187 EAVQLALKVLSKTMDSTSLTSDKLELAEVF 216 (250)
Q Consensus 187 ea~~l~~~~l~~~~~~~~~~~~~iei~ii~ 216 (250)
+++.+||+.+.+||..++++++|++|+
T Consensus 147 ---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 147 ---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp ---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred ---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 799999999999999999999999985
No 49
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=36.68 E-value=50 Score=22.45 Aligned_cols=58 Identities=12% Similarity=-0.009 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhCCCCcc
Q 025640 180 KDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPA 246 (250)
Q Consensus 180 ~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~ 246 (250)
.++++.++..+.+.+.++.. .+..+.+.+++.+|+ ..-..+.+|++.-+.-++.-++.
T Consensus 23 ~~~i~~~~L~~kv~~~~~~~------~~~~f~lky~DEeGD---~itisSd~EL~eAl~l~~~n~~~ 80 (89)
T 1vd2_A 23 EPSISFEGLCNEVRDMCSFD------NEQLFTMKWIDEEGD---PCTVSSQLELEEAFRLYELNKDS 80 (89)
T ss_dssp CTTCCHHHHHHHHHHHTTCC------SSCCEEEEECCSSSC---CEECCSHHHHHHHHHHHHHTSCC
T ss_pred CCCCCHHHHHHHHHHHhCCC------CCCeEEEEEECCCCC---cccccCHHHHHHHHHHHHccCCC
Confidence 56789999888887766532 356899999998874 36789999999888766544443
No 50
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=33.36 E-value=59 Score=23.28 Aligned_cols=33 Identities=3% Similarity=-0.045 Sum_probs=26.8
Q ss_pred CCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhC
Q 025640 207 SDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHG 241 (250)
Q Consensus 207 ~~~iei~ii~~~~~~~~~~~~~~~~ei~~~~~~~~ 241 (250)
.+.+-|.++++++ ++ .+|.++++++-.+..++.
T Consensus 66 ~~~~vVkVvD~~T-gE-VIRqIPpEe~L~l~~~l~ 98 (117)
T 2hc5_A 66 LNEYYVKVIEDST-NE-VIREIPPKRWLDFYAAMT 98 (117)
T ss_dssp TTEEEEEEEETTT-TE-EEEEECHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCC-Cc-EEEeCChHHHHHHHHHHH
Confidence 5678899999886 43 469999999999887765
No 51
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=32.96 E-value=7.7 Score=28.00 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=12.5
Q ss_pred CCCccccCCCCcccc
Q 025640 6 DSRTTIFSPEGRLYQ 20 (250)
Q Consensus 6 d~~~~~f~p~G~l~q 20 (250)
|..+|.|+|+||+.-
T Consensus 56 ~h~vTfF~~~Grl~~ 70 (138)
T 3rj2_X 56 RHRVTFFNATGRYIT 70 (138)
T ss_dssp EEEEEEECTTSCEEE
T ss_pred eeEEEEEcCCCcEEE
Confidence 678899999998853
No 52
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=28.80 E-value=1.2e+02 Score=23.66 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECC
Q 025640 180 KDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCS 229 (250)
Q Consensus 180 ~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~ 229 (250)
.+.+++++|.+++..++..+.++ +.++-|.|++..| ..+-+.+++
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~----g~pV~IaVvD~~G-~lla~~RmD 106 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKD----GRHVSVAVVDRNG-NTLVTLRGD 106 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTS-CEEEEEECT
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc----CCCEEEEEEeCCC-CEEEEEecC
Confidence 47899999999999999999884 3589999998776 334455554
No 53
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=24.98 E-value=73 Score=27.55 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=40.7
Q ss_pred EEEEEeCCCCeEEEEECCCCceecceEEEEeCChHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 025640 135 LFAGWDKNYGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDISREEAVQLALKV 195 (250)
Q Consensus 135 iv~G~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~ 195 (250)
||.-+. +|-.+..+|..|.+.....+++|.|. ..+++. ......+.+|..++|.+.
T Consensus 178 llVnIG--sGvSiikv~~~~~f~rvgG~siGGGT--flGL~~-lLtg~~~~dEl~~lA~~G 233 (360)
T 2i7n_A 178 LLVNMG--SGVSILAVYSKDNYKRVTGTSLGGGT--FLGLCC-LLTGCETFEEALEMAAKG 233 (360)
T ss_dssp EEEEES--SSEEEEEEEETTEEEEEEEESCSHHH--HHHHHH-HHHCCCSHHHHHHHHHHC
T ss_pred EEEEeC--CCcEEEEEcCCCCEEEeccccCccHh--HHHHHH-HHhCCCCHHHHHHHHHcC
Confidence 455443 35689999999999999999999887 344443 334457999999998654
No 54
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=24.97 E-value=90 Score=23.05 Aligned_cols=45 Identities=18% Similarity=0.045 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEEEeCCCCceeEEECCH
Q 025640 181 DDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSP 230 (250)
Q Consensus 181 ~~~s~~ea~~l~~~~l~~~~~~~~~~~~~iei~ii~~~~~~~~~~~~~~~ 230 (250)
+.+|+++|.+++..+...+.++ +.++-|.|++..| ..+-+.+++.
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G-~ll~~~rmdg 54 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGG-NTLLIQRMDE 54 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTS-CEEEEEECTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCC-CEEEEEECCC
Confidence 4589999999999999999874 4589999998766 3344455543
No 55
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=21.68 E-value=48 Score=26.49 Aligned_cols=32 Identities=13% Similarity=0.006 Sum_probs=27.2
Q ss_pred cccCCCCcccccchHHHHhcCCccEEEEEeCC
Q 025640 10 TIFSPEGRLYQVEYAMEAIGNAGSAIGILSKD 41 (250)
Q Consensus 10 ~~f~p~G~l~qveya~~a~~~g~t~igi~~~d 41 (250)
|.||+||..-.-|++..|...|=..||++-.+
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~Gl~~iaiTDH~ 39 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAKGLKGVVFTDHS 39 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHTTCSEEEEEEEC
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCC
Confidence 57899999888899999999999888877554
No 56
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=20.64 E-value=25 Score=23.24 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=22.4
Q ss_pred CCCccccCCCCcccccchHHHH------h--cCCccEEEEEeCC
Q 025640 6 DSRTTIFSPEGRLYQVEYAMEA------I--GNAGSAIGILSKD 41 (250)
Q Consensus 6 d~~~~~f~p~G~l~qveya~~a------~--~~g~t~igi~~~d 41 (250)
...+.+|+|+|+++.+.-...+ + .-|..++|.+.++
T Consensus 5 ~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG 48 (78)
T 3hvz_A 5 PEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDG 48 (78)
T ss_dssp -CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETT
T ss_pred CceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEECC
Confidence 3457899999999886542211 1 1245678877644
Done!