Query 025641
Match_columns 250
No_of_seqs 297 out of 1654
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:57:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2738 Putative methionine am 100.0 2.6E-51 5.5E-56 366.7 17.7 177 68-244 69-250 (369)
2 PLN03158 methionine aminopepti 100.0 6.1E-43 1.3E-47 330.0 21.9 177 68-244 90-271 (396)
3 PRK12897 methionine aminopepti 100.0 1.3E-30 2.7E-35 231.6 18.4 137 108-244 2-138 (248)
4 COG0024 Map Methionine aminope 100.0 8.7E-31 1.9E-35 233.7 17.2 135 109-243 4-140 (255)
5 PRK12318 methionine aminopepti 100.0 6.6E-30 1.4E-34 232.8 19.5 135 109-243 42-178 (291)
6 PRK07281 methionine aminopepti 100.0 9.6E-30 2.1E-34 231.3 17.8 138 107-244 1-169 (286)
7 TIGR00500 met_pdase_I methioni 100.0 2.2E-29 4.7E-34 222.6 18.7 136 109-244 2-137 (247)
8 PRK12896 methionine aminopepti 100.0 6.3E-29 1.4E-33 220.2 18.2 139 106-244 6-144 (255)
9 COG0006 PepP Xaa-Pro aminopept 100.0 2.1E-29 4.5E-34 236.5 15.2 139 102-245 146-284 (384)
10 PRK05716 methionine aminopepti 100.0 3.9E-28 8.5E-33 214.8 18.2 138 107-244 2-139 (252)
11 PRK09795 aminopeptidase; Provi 100.0 5.1E-28 1.1E-32 225.5 15.8 136 104-244 121-261 (361)
12 PRK10879 proline aminopeptidas 100.0 6.4E-28 1.4E-32 230.8 16.4 136 104-244 167-303 (438)
13 TIGR02993 ectoine_eutD ectoine 99.9 1.9E-27 4.2E-32 224.2 14.3 142 101-244 149-291 (391)
14 PRK15173 peptidase; Provisiona 99.9 2E-26 4.3E-31 212.6 15.0 140 99-244 84-223 (323)
15 cd01090 Creatinase Creatine am 99.9 5.8E-26 1.3E-30 199.9 16.9 129 116-244 1-130 (228)
16 PRK14575 putative peptidase; P 99.9 3E-26 6.4E-31 217.3 15.8 141 98-244 166-306 (406)
17 PRK14576 putative endopeptidas 99.9 1.1E-25 2.4E-30 213.3 15.9 138 101-244 168-305 (405)
18 cd01086 MetAP1 Methionine Amin 99.9 2.9E-25 6.2E-30 194.9 17.3 128 116-243 1-128 (238)
19 cd01087 Prolidase Prolidase. E 99.9 2.8E-25 6.1E-30 195.9 16.4 123 116-244 1-124 (243)
20 PRK13607 proline dipeptidase; 99.9 2.6E-25 5.7E-30 213.1 15.1 135 103-244 154-289 (443)
21 cd01092 APP-like Similar to Pr 99.9 2.3E-24 4.9E-29 184.3 16.5 124 116-244 1-124 (208)
22 TIGR00495 crvDNA_42K 42K curve 99.9 3.7E-24 8E-29 202.2 17.5 135 108-243 11-158 (389)
23 cd01085 APP X-Prolyl Aminopept 99.9 4.3E-23 9.3E-28 181.5 14.9 122 118-244 6-132 (224)
24 PF00557 Peptidase_M24: Metall 99.9 6.9E-23 1.5E-27 175.7 15.4 122 117-244 1-123 (207)
25 cd01089 PA2G4-like Related to 99.9 1.1E-22 2.4E-27 178.6 16.1 127 116-244 1-141 (228)
26 PTZ00053 methionine aminopepti 99.9 1.5E-22 3.3E-27 194.2 18.3 129 106-243 148-283 (470)
27 cd01066 APP_MetAP A family inc 99.9 2.7E-22 6E-27 168.9 15.4 123 116-244 1-123 (207)
28 TIGR00501 met_pdase_II methion 99.9 9.7E-22 2.1E-26 179.5 16.5 120 113-243 2-124 (295)
29 PRK08671 methionine aminopepti 99.9 3.5E-21 7.6E-26 175.4 16.3 119 115-244 1-122 (291)
30 cd01088 MetAP2 Methionine Amin 99.9 1.5E-20 3.3E-25 171.2 15.7 118 116-244 1-121 (291)
31 KOG2737 Putative metallopeptid 99.8 7.2E-21 1.6E-25 175.8 11.6 137 102-242 177-318 (492)
32 KOG2414 Putative Xaa-Pro amino 99.8 4.7E-21 1E-25 178.4 10.0 137 104-245 222-359 (488)
33 cd01091 CDC68-like Related to 99.8 4.6E-20 1E-24 164.2 13.8 126 116-243 1-139 (243)
34 KOG2776 Metallopeptidase [Gene 99.4 5.3E-12 1.1E-16 116.5 12.2 133 108-242 13-159 (398)
35 KOG1189 Global transcriptional 99.3 3E-11 6.5E-16 119.8 11.5 146 94-244 121-278 (960)
36 KOG2413 Xaa-Pro aminopeptidase 99.2 4.5E-11 9.8E-16 116.5 10.0 139 102-244 299-447 (606)
37 KOG2775 Metallopeptidase [Gene 99.0 2.3E-09 5.1E-14 97.4 11.5 124 111-243 80-210 (397)
38 COG5406 Nucleosome binding fac 98.6 7.3E-08 1.6E-12 94.8 8.1 143 99-244 159-319 (1001)
39 cd01066 APP_MetAP A family inc 97.9 0.00031 6.7E-09 58.8 12.5 102 117-220 102-204 (207)
40 cd01092 APP-like Similar to Pr 97.6 0.001 2.3E-08 56.5 11.8 100 117-219 103-204 (208)
41 PRK05716 methionine aminopepti 97.4 0.002 4.3E-08 56.9 11.7 100 118-220 119-240 (252)
42 TIGR00500 met_pdase_I methioni 97.4 0.0032 6.9E-08 55.6 12.3 100 118-220 117-238 (247)
43 cd01086 MetAP1 Methionine Amin 97.4 0.0035 7.6E-08 54.8 12.4 100 118-220 109-230 (238)
44 PRK15173 peptidase; Provisiona 97.4 0.0026 5.7E-08 59.0 12.0 100 118-220 203-306 (323)
45 PRK14575 putative peptidase; P 97.3 0.0037 8E-08 59.7 12.1 100 118-220 286-389 (406)
46 cd01090 Creatinase Creatine am 97.2 0.0054 1.2E-07 54.0 12.1 100 118-220 110-220 (228)
47 PRK14576 putative endopeptidas 97.2 0.0049 1.1E-07 58.8 12.4 100 118-220 285-388 (405)
48 TIGR02993 ectoine_eutD ectoine 97.2 0.004 8.6E-08 59.1 11.5 99 118-220 271-374 (391)
49 PRK09795 aminopeptidase; Provi 97.2 0.0069 1.5E-07 56.7 12.8 105 113-220 236-342 (361)
50 cd01091 CDC68-like Related to 97.2 0.0043 9.2E-08 55.4 10.5 104 117-220 119-234 (243)
51 PRK12897 methionine aminopepti 97.1 0.005 1.1E-07 54.6 10.7 100 118-220 118-239 (248)
52 PRK12318 methionine aminopepti 97.1 0.0064 1.4E-07 55.7 11.6 87 118-207 159-248 (291)
53 PF00557 Peptidase_M24: Metall 97.1 0.0038 8.3E-08 53.2 9.4 98 119-219 104-206 (207)
54 cd01087 Prolidase Prolidase. E 97.0 0.0085 1.8E-07 52.7 11.3 102 118-220 104-235 (243)
55 PRK08671 methionine aminopepti 97.0 0.014 3E-07 53.4 12.9 97 118-219 102-205 (291)
56 PRK12896 methionine aminopepti 97.0 0.013 2.7E-07 51.9 12.0 99 119-220 125-246 (255)
57 cd01088 MetAP2 Methionine Amin 96.9 0.015 3.2E-07 53.2 11.9 97 118-219 101-204 (291)
58 PRK07281 methionine aminopepti 96.9 0.012 2.5E-07 53.9 11.0 85 118-205 149-237 (286)
59 cd01089 PA2G4-like Related to 96.8 0.016 3.5E-07 50.8 10.8 99 117-220 120-220 (228)
60 PLN03158 methionine aminopepti 96.6 0.027 5.9E-07 53.9 11.5 84 119-205 252-339 (396)
61 COG0006 PepP Xaa-Pro aminopept 96.4 0.036 7.8E-07 52.2 11.4 114 103-220 250-367 (384)
62 TIGR00501 met_pdase_II methion 96.3 0.034 7.4E-07 51.0 9.9 95 119-218 106-207 (295)
63 PRK10879 proline aminopeptidas 96.0 0.099 2.2E-06 50.5 11.9 100 119-219 284-410 (438)
64 COG0024 Map Methionine aminope 95.9 0.091 2E-06 47.6 10.6 96 117-213 120-218 (255)
65 TIGR00495 crvDNA_42K 42K curve 95.9 0.079 1.7E-06 50.6 10.7 95 118-213 139-242 (389)
66 PTZ00053 methionine aminopepti 95.3 0.17 3.7E-06 49.5 10.8 95 118-218 264-375 (470)
67 cd01085 APP X-Prolyl Aminopept 94.4 0.99 2.1E-05 39.6 12.2 95 121-219 115-215 (224)
68 PRK13607 proline dipeptidase; 93.7 0.53 1.2E-05 45.7 10.0 88 120-207 271-391 (443)
69 KOG2738 Putative methionine am 83.9 7.5 0.00016 36.3 8.7 82 117-201 229-314 (369)
70 KOG1189 Global transcriptional 83.0 5 0.00011 41.6 7.8 103 119-222 259-370 (960)
71 COG5406 Nucleosome binding fac 68.9 18 0.00039 37.1 7.3 80 120-203 301-385 (1001)
72 cd01666 TGS_DRG_C TGS_DRG_C: 63.4 27 0.00059 25.6 5.7 52 137-199 21-73 (75)
73 PRK01490 tig trigger factor; P 58.6 42 0.00091 32.1 7.7 58 139-220 130-191 (435)
74 TIGR00115 tig trigger factor. 50.4 66 0.0014 30.5 7.5 58 139-220 118-180 (408)
75 cd04938 TGS_Obg-like TGS_Obg-l 42.1 48 0.001 24.2 4.0 47 137-199 28-74 (76)
76 PF04363 DUF496: Protein of un 38.7 1.2E+02 0.0027 23.2 5.8 38 118-156 27-64 (95)
77 KOG2737 Putative metallopeptid 38.1 73 0.0016 30.9 5.5 28 128-155 310-337 (492)
78 PF03477 ATP-cone: ATP cone do 36.7 27 0.00059 25.6 2.1 35 125-159 40-74 (90)
79 PRK05423 hypothetical protein; 35.5 53 0.0011 25.5 3.4 29 128-156 43-71 (104)
80 PF05184 SapB_1: Saposin-like 33.8 87 0.0019 19.1 3.8 34 122-155 3-36 (39)
81 COG0544 Tig FKBP-type peptidyl 30.9 1.1E+02 0.0025 29.8 5.8 45 140-208 131-175 (441)
82 PF09506 Salt_tol_Pase: Glucos 29.1 2.1E+02 0.0046 27.3 6.9 127 112-238 98-279 (381)
83 TIGR02399 salt_tol_Pase glucos 28.9 2.1E+02 0.0046 27.4 6.9 127 112-238 104-284 (389)
84 PRK00464 nrdR transcriptional 26.6 1.8E+02 0.0038 24.4 5.5 38 123-160 85-122 (154)
85 PF00254 FKBP_C: FKBP-type pep 25.8 2.6E+02 0.0056 20.1 6.5 33 188-220 2-41 (94)
86 PF10415 FumaraseC_C: Fumarase 25.5 1E+02 0.0023 21.1 3.3 34 118-151 10-48 (55)
87 cd01669 TGS_Ygr210_C TGS_Ygr21 24.7 2E+02 0.0042 21.0 4.8 48 137-199 27-74 (76)
88 PRK15131 mannose-6-phosphate i 23.7 3.8E+02 0.0083 25.7 7.9 46 18-64 69-114 (389)
89 TIGR03147 cyt_nit_nrfF cytochr 22.3 1.3E+02 0.0028 24.5 3.7 29 123-151 56-84 (126)
90 COG2944 Predicted transcriptio 22.0 1.3E+02 0.0028 23.7 3.6 34 111-149 44-77 (104)
91 PF00249 Myb_DNA-binding: Myb- 21.2 2.3E+02 0.0049 18.2 4.2 43 110-152 3-46 (48)
92 KOG2413 Xaa-Pro aminopeptidase 20.8 2.9E+02 0.0062 28.3 6.5 80 120-207 429-519 (606)
No 1
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-51 Score=366.70 Aligned_cols=177 Identities=62% Similarity=0.990 Sum_probs=168.6
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCCCCccCCCC----CCCCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 025641 68 PNRRRKRLRPGKVSPHRPVPDHIPRPPYVNSQKP----IGIVS-GPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGIT 142 (250)
Q Consensus 68 ~~~~~~~l~~g~~s~~~~vp~~i~~P~y~~~~~~----~~~~~-~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvT 142 (250)
.|.|+++||||++||+|.||+||+||+|+.++.+ +.... ...|++++||+.||+||++++++++++...++||+|
T Consensus 69 ~~~~~g~Lr~~pvsprr~VP~hI~rPdya~~g~s~se~~~~~s~~i~i~~~e~ie~mR~ac~LarevLd~Aa~~v~PgvT 148 (369)
T KOG2738|consen 69 KFRFTGPLRPGPVSPRRPVPDHIPRPDYADSGVSLSEQPEISSNEIKILDPEGIEGMRKACRLAREVLDYAATLVRPGVT 148 (369)
T ss_pred cccccCCccccCCCCCCcCCccCCCCchhhcCCcccccccccccceeccCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Confidence 4899999999999999999999999999999663 22222 467899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCCCCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCC
Q 025641 143 TDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVD 222 (250)
Q Consensus 143 e~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~ 222 (250)
++|||+.+|++++++|+|||||||.+||+++|+|+|+++|||+|+.|+||+||||+||++++++|||+|+++||+||+++
T Consensus 149 TdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEviCHGIPD~RpLedGDIvNiDVtvY~~GyHGDlneTffvG~Vd 228 (369)
T KOG2738|consen 149 TDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEVICHGIPDSRPLEDGDIVNIDVTVYLNGYHGDLNETFFVGNVD 228 (369)
T ss_pred HHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhheeecCCCCcCcCCCCCEEeEEEEEEeccccCccccceEeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 025641 223 DEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 223 ~e~~~l~~~~~eA~~aaia~~~ 244 (250)
++.++|+++++|+++.||++|.
T Consensus 229 e~~k~LVkvT~EcL~kaI~~~k 250 (369)
T KOG2738|consen 229 EKAKKLVKVTRECLEKAIAIVK 250 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999984
No 2
>PLN03158 methionine aminopeptidase; Provisional
Probab=100.00 E-value=6.1e-43 Score=329.99 Aligned_cols=177 Identities=48% Similarity=0.802 Sum_probs=169.7
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCCCCccCCCCC-----CCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 025641 68 PNRRRKRLRPGKVSPHRPVPDHIPRPPYVNSQKPI-----GIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGIT 142 (250)
Q Consensus 68 ~~~~~~~l~~g~~s~~~~vp~~i~~P~y~~~~~~~-----~~~~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvT 142 (250)
.|+|+++||||++||++.||+||++|+|+.++.+. .+.+.|.|||++||+.||+|+++++++++++.+.++||+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~p~~i~~p~y~~~~~~~~~~~~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a~~~irpGvT 169 (396)
T PLN03158 90 DFDWTGPLRPYPISPRRVVPDHIPKPDWALDGTPKIEPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVT 169 (396)
T ss_pred CCCCCcccccCCCCCCCCCCccCCCCccccCCCCccccccccccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 48999999999999999999999999999886532 3567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCCCCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCC
Q 025641 143 TDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVD 222 (250)
Q Consensus 143 e~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~ 222 (250)
|.||++++++++.++|++|++++|.+||+++|+|.|+++|||+|++++|++||+|+||++++++||++|++|||+||+++
T Consensus 170 e~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svcts~N~~i~Hgip~~r~L~~GDiV~iDvg~~~~GY~aD~tRT~~VG~~~ 249 (396)
T PLN03158 170 TDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGDLNETFFVGNVD 249 (396)
T ss_pred HHHHHHHHHHHHHHcCCccccccccCCCceeeecccccccCCCCCCccCCCCCEEEEEEeEEECCEEEeEEeEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 025641 223 DEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 223 ~e~~~l~~~~~eA~~aaia~~~ 244 (250)
++++++++++++++++||++|.
T Consensus 250 ~e~~~l~e~~~eal~~aI~~vk 271 (396)
T PLN03158 250 EASRQLVKCTYECLEKAIAIVK 271 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999874
No 3
>PRK12897 methionine aminopeptidase; Reviewed
Probab=99.97 E-value=1.3e-30 Score=231.56 Aligned_cols=137 Identities=34% Similarity=0.538 Sum_probs=130.5
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCC
Q 025641 108 PEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPD 187 (250)
Q Consensus 108 R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~ 187 (250)
..|||++||+.||+|+++++++++++.+.++||+||.||++.++..+.++|+.....+|.+|+.++|+|+|+..+|+.|+
T Consensus 2 ~~iKs~~EI~~~r~A~~i~~~~~~~~~~~~~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~i~~g~n~~~~H~~p~ 81 (248)
T PRK12897 2 ITIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICASVNDEMCHAFPA 81 (248)
T ss_pred ceeCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccCCCCcceEeccCCEeecCCCC
Confidence 47999999999999999999999999999999999999999999999999998765567789989999999999999999
Q ss_pred CCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 188 SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 188 ~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
+++|++||+|++|+|+.++||++|++|||++|+++++++++|+++++|++++++++.
T Consensus 82 ~~~l~~Gd~V~iD~g~~~~GY~sD~tRT~~vG~~s~~~~~~~~~~~~a~~~~i~~~k 138 (248)
T PRK12897 82 DVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENALYKGIDQAV 138 (248)
T ss_pred CcccCCCCEEEEEeeEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999998753
No 4
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=8.7e-31 Score=233.68 Aligned_cols=135 Identities=41% Similarity=0.719 Sum_probs=129.2
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCC-
Q 025641 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPD- 187 (250)
Q Consensus 109 ~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~- 187 (250)
.+|+++||+.||+||+|+.++++++.+.++||+|+.||+..+++++.++|++|++++|.+||..+|+|+|+.+|||+|+
T Consensus 4 ~ikt~~eiek~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe~v~HgiP~d 83 (255)
T COG0024 4 SIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNEVVAHGIPGD 83 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehhheeeecCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCH-HHHHHHHHHHHHHHHHHHHh
Q 025641 188 SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDD-EARNLVKVVCWNFKLHRVLC 243 (250)
Q Consensus 188 ~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~-e~~~l~~~~~eA~~aaia~~ 243 (250)
+++|++||+|+||+|+.++||++|.++||.||+.++ ..++|.+++++|+.+||+..
T Consensus 84 ~~vlk~GDiv~IDvg~~~dG~~~Dsa~T~~vg~~~~~~~~~L~~~t~eal~~~I~~v 140 (255)
T COG0024 84 KKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEALYAGIEAV 140 (255)
T ss_pred CcccCCCCEEEEEEEEEECCeeeeEEEEEECCCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999997664 77779999999999999864
No 5
>PRK12318 methionine aminopeptidase; Provisional
Probab=99.97 E-value=6.6e-30 Score=232.83 Aligned_cols=135 Identities=33% Similarity=0.626 Sum_probs=129.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCC--CCCceeeecCCCccccCCC
Q 025641 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYG--GFPKSVCTSVNECICHGIP 186 (250)
Q Consensus 109 ~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~--gfp~~V~sg~N~~~~Hg~P 186 (250)
.|||++||+.||+|+++++++++++.+.++||+||.||++.+++.+.+.|+.++.++|. +|++++|+|.|+.++|+.|
T Consensus 42 ~IKs~~EIe~~R~Aa~I~~~a~~a~~~~irpG~tE~Eiaa~~~~~~~~~G~~~~~~~~~~~~f~~~v~~g~n~~~~H~~p 121 (291)
T PRK12318 42 IIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYGSPPFPKTICTSLNEVICHGIP 121 (291)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCccccccCCCCCCcceEeeccceeecCCC
Confidence 59999999999999999999999999999999999999999999999999988777664 5999999999999999999
Q ss_pred CCCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 025641 187 DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLC 243 (250)
Q Consensus 187 ~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~ 243 (250)
++++|++||+|++|+++.++||++|++|||++|+++++++++|+++.++++++++++
T Consensus 122 ~~~~l~~GD~V~vD~g~~~~GY~aDitRT~~vG~~~~~~~~~~~~~~~a~~~~i~~~ 178 (291)
T PRK12318 122 NDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKKVCQASLECLNAAIAIL 178 (291)
T ss_pred CCCccCCCCEEEEEEeEEECcEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999876
No 6
>PRK07281 methionine aminopeptidase; Reviewed
Probab=99.97 E-value=9.6e-30 Score=231.33 Aligned_cols=138 Identities=22% Similarity=0.369 Sum_probs=130.0
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCC----CCCCceeeecCCCccc
Q 025641 107 GPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGY----GGFPKSVCTSVNECIC 182 (250)
Q Consensus 107 ~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y----~gfp~~V~sg~N~~~~ 182 (250)
|..|||++||+.||+|++|++++++++.+.++||+||.||++.++..+.+.|+.+..+++ .+||+++|+|.|+.++
T Consensus 1 m~~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~pG~te~ei~~~~~~~~~~~g~~~~~~G~~~~~~~f~~~v~~G~n~~~~ 80 (286)
T PRK07281 1 MITLKSAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPYATCCGLNDEVA 80 (286)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCcccccCCCCcccCCCcceEEecccccc
Confidence 357999999999999999999999999999999999999999999999999998877664 4699999999999999
Q ss_pred cCCCCCCcCCCCCEEEEEEee---------------------------EECCEEeceeeEEEcCCCCHHHHHHHHHHHHH
Q 025641 183 HGIPDSRALEDGDTINIDVTV---------------------------YLNGYHGDTSATFFCGDVDDEARNLVKVVCWN 235 (250)
Q Consensus 183 Hg~P~~r~Lq~GDiV~IDvg~---------------------------~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA 235 (250)
|+.|++++|++||+|++|+++ .|+||++|++|||++|+++++++++|+++++|
T Consensus 81 H~~p~~~~l~~Gd~v~iD~g~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~gy~~D~~rT~~vG~~~~~~~~l~~~~~ea 160 (286)
T PRK07281 81 HAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKEA 160 (286)
T ss_pred CCCCCCcCcCCCCEEEEEecccccccccccccccccccccccccccccccCCEEeeeEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999999999999999997 48999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 025641 236 FKLHRVLCF 244 (250)
Q Consensus 236 ~~aaia~~~ 244 (250)
+++|++++.
T Consensus 161 ~~~ai~~~k 169 (286)
T PRK07281 161 MYRGIEQAV 169 (286)
T ss_pred HHHHHHHhc
Confidence 999999753
No 7
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=99.97 E-value=2.2e-29 Score=222.64 Aligned_cols=136 Identities=45% Similarity=0.713 Sum_probs=130.2
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCCC
Q 025641 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDS 188 (250)
Q Consensus 109 ~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~~ 188 (250)
+|||++||+.||+|+++++++++.+.+.++||+||.||++.+++.+.+.|+.+...++.+|+.++++|.|+..+|+.|++
T Consensus 2 ~iKs~~Ei~~~r~A~~i~~~~~~~~~~~i~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~H~~~~~ 81 (247)
T TIGR00500 2 SLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSVCISVNEVVIHGIPDK 81 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHCCCCccccCCCCCCceeEeccccEEEecCCCC
Confidence 69999999999999999999999999999999999999999999999999987766677899999999999999999999
Q ss_pred CcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 189 RALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 189 r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
++|++||+|++|+|+.|+||++|++|||++|+++++++++|+++.++++++++++.
T Consensus 82 ~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~k 137 (247)
T TIGR00500 82 KVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEESLYKAIEEAK 137 (247)
T ss_pred cccCCCCEEEEEEEEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999764
No 8
>PRK12896 methionine aminopeptidase; Reviewed
Probab=99.96 E-value=6.3e-29 Score=220.18 Aligned_cols=139 Identities=44% Similarity=0.728 Sum_probs=132.0
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCC
Q 025641 106 SGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGI 185 (250)
Q Consensus 106 ~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~ 185 (250)
+.+.|||++||+.||+|+++++++++++.+.++||+||.||++.+++.+.+.|+.+++..+.+|+.++|+|.|+..+|+.
T Consensus 6 ~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~h~~ 85 (255)
T PRK12896 6 RGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGYYGFPGSTCISVNEEVAHGI 85 (255)
T ss_pred CceeECCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHCCCEeCcccCCCCCcceEecCCCeeEecC
Confidence 44689999999999999999999999999999999999999999999999999988776677899999999999999999
Q ss_pred CCCCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 186 PDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 186 P~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
|++++|++||+|++|+++.++||++|++|||++|+++++++++|+++.++++++++++.
T Consensus 86 p~~~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~k 144 (255)
T PRK12896 86 PGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRVAEEALWAGIKQVK 144 (255)
T ss_pred CCCccCCCCCEEEEEEeEEECcEEEeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998764
No 9
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.96 E-value=2.1e-29 Score=236.48 Aligned_cols=139 Identities=26% Similarity=0.299 Sum_probs=132.4
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCcc
Q 025641 102 IGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 181 (250)
Q Consensus 102 ~~~~~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~ 181 (250)
..+.++|+|||++||+.||+|+++++.++..+.+.++||+||.||.+.++..+.+.|++.. +|+++|++|.|++.
T Consensus 146 ~~i~~lR~iKs~~EI~~ir~A~~i~~~a~~~~~~~~~~g~tE~ev~a~l~~~~~~~G~~~~-----sf~~iv~~G~n~a~ 220 (384)
T COG0006 146 DLVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGP-----SFDTIVASGENAAL 220 (384)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCcc-----CcCcEEeccccccC
Confidence 3467899999999999999999999999999999999999999999999999999997642 58999999999999
Q ss_pred ccCCCCCCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcc
Q 025641 182 CHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCFL 245 (250)
Q Consensus 182 ~Hg~P~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~~ 245 (250)
+|+.|+++.+++||+|+||+|+.|+||++|+||||.+|+|+++++++|+++.+|+++++++++-
T Consensus 221 pH~~~~~~~~~~gd~vliD~G~~~~gY~sDiTRT~~~G~~~~~~~~iy~~V~~aq~aa~~~~rp 284 (384)
T COG0006 221 PHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIRP 284 (384)
T ss_pred cCCCCCcccccCCCEEEEEeeeEECCccccceeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999863
No 10
>PRK05716 methionine aminopeptidase; Validated
Probab=99.96 E-value=3.9e-28 Score=214.78 Aligned_cols=138 Identities=49% Similarity=0.812 Sum_probs=130.6
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCC
Q 025641 107 GPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP 186 (250)
Q Consensus 107 ~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P 186 (250)
+..|||++||+.||+|+++++++++.+.+.++||+||.||++.+++.+.+.|+.+.+.++.+|+.++++|.|+..+|+.|
T Consensus 2 ~~~iKs~~Ei~~~r~A~~i~~~~~~~a~~~i~pG~se~ela~~~~~~~~~~G~~~~~~~~~~~~~~~~~g~~~~~~h~~~ 81 (252)
T PRK05716 2 AITIKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHGFPKSICTSVNEVVCHGIP 81 (252)
T ss_pred ceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHCCCEecccCCCCCCcCeEecccceeecCCC
Confidence 35799999999999999999999999999999999999999999999999998876666677888999999999999999
Q ss_pred CCCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 187 DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 187 ~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
++++|++||+|.+|+++.++||++|++|||++|+++++++++|+++.++++++++++.
T Consensus 82 ~~~~l~~Gd~v~id~g~~~~gY~~d~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (252)
T PRK05716 82 SDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKEALYLGIAAVK 139 (252)
T ss_pred CCcccCCCCEEEEEEEEEECCEEEEeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999864
No 11
>PRK09795 aminopeptidase; Provisional
Probab=99.95 E-value=5.1e-28 Score=225.53 Aligned_cols=136 Identities=17% Similarity=0.250 Sum_probs=126.8
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCcccc
Q 025641 104 IVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICH 183 (250)
Q Consensus 104 ~~~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~H 183 (250)
+..+|+|||++||+.||+|+++++++++.+.+.++||+||.||++.++..+.+.|+++. +|+++|++|.|+..||
T Consensus 121 ~~~lR~iKs~~Ei~~~r~a~~i~~~~~~~~~~~i~~G~tE~e~~~~~~~~~~~~G~~~~-----~f~~iv~sG~~~~~ph 195 (361)
T PRK09795 121 PDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKA-----SFDTIVASGWRGALPH 195 (361)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHCCCCcC-----CCCeEEEEeccccccC
Confidence 67899999999999999999999999999999999999999999999999999998763 5889999999999999
Q ss_pred CCCCCCcCCCCCEEEEEEeeEECCEEeceeeEEEcCC--CCHH---HHHHHHHHHHHHHHHHHHhc
Q 025641 184 GIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGD--VDDE---ARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 184 g~P~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~--~~~e---~~~l~~~~~eA~~aaia~~~ 244 (250)
+.|++++|++||+|++|+|+.|+||++|++|||++|. ++++ ++++|+++.+|++++++++.
T Consensus 196 ~~~~~~~l~~gd~v~~d~g~~~~gY~sd~tRt~~~g~~~~~~~~~~~~~~~~~v~~a~~~~~~~~r 261 (361)
T PRK09795 196 GKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIR 261 (361)
T ss_pred CCCCCceecCCCEEEEEeccccCCEeecceEEEEeCCcCCchhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999963 3333 78999999999999999874
No 12
>PRK10879 proline aminopeptidase P II; Provisional
Probab=99.95 E-value=6.4e-28 Score=230.78 Aligned_cols=136 Identities=22% Similarity=0.328 Sum_probs=128.5
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCcccc
Q 025641 104 IVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICH 183 (250)
Q Consensus 104 ~~~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~H 183 (250)
+.++|+|||++||+.||+|++++..+++++++.++||+||.||++.++..+.++|+.+ .+|+++|++|.|.+++|
T Consensus 167 l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~~~pG~tE~ei~a~~~~~~~~~G~~~-----~~~~~iv~~G~na~~~H 241 (438)
T PRK10879 167 VHEMRLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARY-----PSYNTIVGSGENGCILH 241 (438)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHCCCCC-----CCCCcEEEEcCcccccc
Confidence 4468999999999999999999999999999999999999999999999999999854 25889999999999999
Q ss_pred CCCCCCcCCCCCEEEEEEeeEECCEEeceeeEEEc-CCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 184 GIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFC-GDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 184 g~P~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~V-G~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
+.|++++|++||+|++|+|+.++||++|+||||+| |+++++++++|++++++++++++++.
T Consensus 242 ~~~~~~~l~~GDlVliD~G~~~~GY~sDitRT~~v~G~~s~~q~~~y~~vl~a~~aai~~~k 303 (438)
T PRK10879 242 YTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESLETSLRLYR 303 (438)
T ss_pred CCCCccccCCCCEEEEEeCeEECCEEEEeEEEEEECCcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999 89999999999999999999999863
No 13
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=99.95 E-value=1.9e-27 Score=224.23 Aligned_cols=142 Identities=15% Similarity=0.160 Sum_probs=123.9
Q ss_pred CCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCceeeecCCC
Q 025641 101 PIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDN-GAYPSPLGYGGFPKSVCTSVNE 179 (250)
Q Consensus 101 ~~~~~~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~-Ga~ps~l~y~gfp~~V~sg~N~ 179 (250)
.+.+.++|+|||++||+.||+|++|++++++++.+.++||+||.||++.+.+..... ....+ .+..|.+++.+|.|+
T Consensus 149 ~~~~~~lR~iKs~~EI~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~~~~~g~--~~~~~~~iv~sG~~~ 226 (391)
T TIGR02993 149 TALVNWQRAVKSETEISYMRVAARIVEKMHQRIFERIEPGMRKCDLVADIYDAGIRGVDGFGG--DYPAIVPLLPSGADA 226 (391)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhhcccCcCC--CcCCcccccccCccc
Confidence 334678999999999999999999999999999999999999999999886553321 11111 123466778899999
Q ss_pred ccccCCCCCCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 180 CICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 180 ~~~Hg~P~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
..+|+.|++++|++||+|++|+++.|+||++|++|||++|+|+++++++|+++.+|++++++++.
T Consensus 227 a~pH~~~~~~~l~~gd~v~iD~g~~~~GY~sD~tRT~~vG~p~~~~~~~~~~~~~a~~~~i~~ik 291 (391)
T TIGR02993 227 SAPHLTWDDSPMKVGEGTFFEIAGCYKRYHCPLSRTVFLGKPTQAFLDAEKAVLEGMEAGLEAAK 291 (391)
T ss_pred cCCCCCCCCCcccCCCEEEEEeeeecccCccceeEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999998763
No 14
>PRK15173 peptidase; Provisional
Probab=99.94 E-value=2e-26 Score=212.63 Aligned_cols=140 Identities=17% Similarity=0.249 Sum_probs=124.5
Q ss_pred CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCC
Q 025641 99 QKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 178 (250)
Q Consensus 99 ~~~~~~~~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N 178 (250)
+....+.++|.|||++||+.||+|+++++++++.+.+.++||+||.||++.++..+.+.|... +..| +++.+|.+
T Consensus 84 d~~~~i~~lR~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~~G~tE~el~a~~~~~~~~~g~~~----~~~~-~~i~~G~~ 158 (323)
T PRK15173 84 DSSSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETH----FSRF-HLISVGAD 158 (323)
T ss_pred EhHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCC----CCCC-cEEEECCC
Confidence 334457789999999999999999999999999999999999999999999988888876543 1123 46777776
Q ss_pred CccccCCCCCCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 179 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 179 ~~~~Hg~P~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
..+|+.|+++++++||+|++|+|+.|+||++|++|||++|+++++++++|+++.++++++++++.
T Consensus 159 -~~~h~~~~~~~l~~Gd~V~iD~g~~~~GY~aDitRT~~vG~p~~~~~~~y~~v~ea~~~~~~~ir 223 (323)
T PRK15173 159 -FSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVA 223 (323)
T ss_pred -CccCCCCCCCccCCCCEEEEEeCccCCCEeeeeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 56899999999999999999999999999999999999999999999999999999999999864
No 15
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=99.94 E-value=5.8e-26 Score=199.86 Aligned_cols=129 Identities=17% Similarity=0.133 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCCCCceeeecCCCccccCCCCCCcCCCC
Q 025641 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPL-GYGGFPKSVCTSVNECICHGIPDSRALEDG 194 (250)
Q Consensus 116 Ie~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l-~y~gfp~~V~sg~N~~~~Hg~P~~r~Lq~G 194 (250)
|+.||+|+++++++++++.+.++||+||.||++.+++.+.+.|+...+. .+.++.+++++|.|+..+|+.|++++|++|
T Consensus 1 I~~ir~Aa~i~d~~~~~~~~~i~pG~tE~ei~a~~~~~~~~~ga~~~~~~~~~~~~~~v~~G~~~~~~H~~~~~r~l~~G 80 (228)
T cd01090 1 IALIRHGARIADIGGAAVVEAIREGVPEYEVALAGTQAMVREIAKTFPEVELMDTWTWFQSGINTDGAHNPVTNRKVQRG 80 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCcccccCcceEEEeeccccccCCCCCCcccCCC
Confidence 6899999999999999999999999999999999999999998753221 222344678999999999999999999999
Q ss_pred CEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 195 DTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 195 DiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
|+|++|+++.++||++|++|||++|+++++++++|+++.+|++++++++.
T Consensus 81 D~v~~d~g~~~~GY~ad~~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~r 130 (228)
T cd01090 81 DILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLELIK 130 (228)
T ss_pred CEEEEEEeEEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999763
No 16
>PRK14575 putative peptidase; Provisional
Probab=99.94 E-value=3e-26 Score=217.28 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=125.9
Q ss_pred CCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecC
Q 025641 98 SQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSV 177 (250)
Q Consensus 98 ~~~~~~~~~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~ 177 (250)
.+..+.+.++|+|||++||+.||+|+++++++++++.+.++||+||.||++.+++.+.+.|.... . +.+++.+|.
T Consensus 166 ~d~~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~~----~-~~~~v~~G~ 240 (406)
T PRK14575 166 VDSSSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHF----S-RFHLISVGA 240 (406)
T ss_pred EEcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCcC----C-cCceEEECC
Confidence 33444567899999999999999999999999999999999999999999999988888776431 1 224677787
Q ss_pred CCccccCCCCCCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 178 NECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 178 N~~~~Hg~P~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
+ ..+|+.|++++|++||+|++|+|+.|+||++|++|||++|+++++++++|++++++++++++++.
T Consensus 241 ~-~~~h~~~~~~~l~~Gd~v~iD~g~~~~GY~sditRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~r 306 (406)
T PRK14575 241 D-FSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVA 306 (406)
T ss_pred C-cccCCCCCCCcCCCCCEEEEEeceEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 6 56899999999999999999999999999999999999999999999999999999999999864
No 17
>PRK14576 putative endopeptidase; Provisional
Probab=99.93 E-value=1.1e-25 Score=213.27 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=125.4
Q ss_pred CCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCc
Q 025641 101 PIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNEC 180 (250)
Q Consensus 101 ~~~~~~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~ 180 (250)
.+.+.++|+|||++||+.||+|++++++++..+.+.++||+||.||++.++..+.+.|... +..| .+|++|.| .
T Consensus 168 ~~~l~~lR~iKs~~EI~~~r~A~~i~~~~~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~----~~~~-~~v~~G~~-~ 241 (405)
T PRK14576 168 TALFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETN----FSRF-NLISVGDN-F 241 (405)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCc----CCCC-CEEEECCc-c
Confidence 3346789999999999999999999999999999999999999999999999999887542 1123 57888988 5
Q ss_pred cccCCCCCCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 181 ICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 181 ~~Hg~P~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
.+|+.|+++++++||+|++|+++.++||++|++|||++|+|+++++++|+++.++++++++++.
T Consensus 242 ~~h~~~~~~~l~~Gd~v~~d~g~~~~GY~sd~tRT~~~G~p~~~~~~~~~~~~~a~~a~~~~~r 305 (405)
T PRK14576 242 SPKIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVA 305 (405)
T ss_pred cCCCCCCCcccCCCCEEEEEeceeECCEEeeeeEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999999999999999999999999999999999999864
No 18
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.93 E-value=2.9e-25 Score=194.91 Aligned_cols=128 Identities=53% Similarity=0.928 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCCCCcCCCCC
Q 025641 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGD 195 (250)
Q Consensus 116 Ie~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~~r~Lq~GD 195 (250)
|+.||+|+++++++++++.+.++||+||.||++.+.+.+.++|+.+.++++.+|+..+++|.|+..+|+.|++++|++||
T Consensus 1 I~~lr~A~~i~~~~~~~~~~~~~pG~tE~ev~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~l~~Gd 80 (238)
T cd01086 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICTSVNEVVCHGIPDDRVLKDGD 80 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCcceecCCCCceeCCCCCCcccCCCC
Confidence 68999999999999999999999999999999999999999999887777778888899999999999999999999999
Q ss_pred EEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 025641 196 TINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLC 243 (250)
Q Consensus 196 iV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~ 243 (250)
+|.+|+++.++||++|++|||++|+++++++++|+++.+++++++++.
T Consensus 81 ~v~id~g~~~~GY~ad~~RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 128 (238)
T cd01086 81 IVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEALYKGIEAV 128 (238)
T ss_pred EEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999875
No 19
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=99.93 E-value=2.8e-25 Score=195.93 Aligned_cols=123 Identities=28% Similarity=0.378 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCCCCcCCCCC
Q 025641 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGD 195 (250)
Q Consensus 116 Ie~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~~r~Lq~GD 195 (250)
|+.||+|+++++++++++.+.++||+||.||++.+++.+.+.|+++ +|+.++++|.|+..+|+.|++++|++||
T Consensus 1 i~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~G~~~------~~~~~v~~g~~~~~~H~~~~~~~l~~Gd 74 (243)
T cd01087 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARL------AYSYIVAAGSNAAILHYVHNDQPLKDGD 74 (243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCCc------CCCCeEEECCCccccCCCcCCCcCCCCC
Confidence 6899999999999999999999999999999999999999999873 3788999999999999999999999999
Q ss_pred EEEEEEeeEECCEEeceeeEEEc-CCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 196 TINIDVTVYLNGYHGDTSATFFC-GDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 196 iV~IDvg~~~~GY~aD~sRT~~V-G~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
+|++|+++.|+||++|++|||++ |+++++++++|+++.++++++++++.
T Consensus 75 ~v~vD~g~~~~GY~ad~~Rt~~vgg~~~~~~~~~~~~~~~a~~~~i~~~r 124 (243)
T cd01087 75 LVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACK 124 (243)
T ss_pred EEEEEeCceECCEeeeeeEEEEeCCcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999 69999999999999999999999864
No 20
>PRK13607 proline dipeptidase; Provisional
Probab=99.93 E-value=2.6e-25 Score=213.12 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=119.4
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccc
Q 025641 103 GIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECIC 182 (250)
Q Consensus 103 ~~~~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~ 182 (250)
.+.++|+|||++||+.||+|+++++++++.+++.++||+||.||+..+.... ..+... .+|+++|++|.|++++
T Consensus 154 ~l~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~i~pG~tE~ei~~~~~~~~-~~~~~~-----~~y~~iva~G~naa~~ 227 (443)
T PRK13607 154 YLHYHRAYKTDYELACMREAQKIAVAGHRAAKEAFRAGMSEFDINLAYLTAT-GQRDND-----VPYGNIVALNEHAAVL 227 (443)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh-CCCCcC-----CCCCcEEEecCcceEe
Confidence 3567899999999999999999999999999999999999999998654322 222221 2588999999999999
Q ss_pred cCCCCCC-cCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 183 HGIPDSR-ALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 183 Hg~P~~r-~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
|+.|+++ ++++||+|++|+|+.++||++|+||||+ |+++++++++|+++.+|++++++++.
T Consensus 228 H~~~~~~~~~~~Gd~vliD~Ga~~~GY~sDiTRTf~-g~~~~~~~~ly~~v~~aq~aai~~ik 289 (443)
T PRK13607 228 HYTKLDHQAPAEMRSFLIDAGAEYNGYAADITRTYA-AKEDNDFAALIKDVNKEQLALIATMK 289 (443)
T ss_pred cCCccCCCCCCCCCEEEEEeeEEECCEEecceEEEe-cCCCHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999875 6899999999999999999999999999 88999999999999999999999863
No 21
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=99.92 E-value=2.3e-24 Score=184.30 Aligned_cols=124 Identities=27% Similarity=0.429 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCCCCcCCCCC
Q 025641 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGD 195 (250)
Q Consensus 116 Ie~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~~r~Lq~GD 195 (250)
|++||+|+++++.++.++.+.++||+||.||++.+++.+.+.|+++. +|+++|++|.|+..+|+.|++++|++||
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~~-----~~~~~v~~g~~~~~~h~~~~~~~l~~gd 75 (208)
T cd01092 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEGP-----SFDTIVASGPNSALPHGVPSDRKIEEGD 75 (208)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCCC-----CCCcEEEECccccccCCCCCCcCcCCCC
Confidence 68999999999999999999999999999999999999999998752 5899999999999999999999999999
Q ss_pred EEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 196 TINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 196 iV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
+|++|+++.++||++|++|||++|+++++++++++++.++++++++++.
T Consensus 76 ~v~id~g~~~~gy~~d~~RT~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (208)
T cd01092 76 LVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIKAVK 124 (208)
T ss_pred EEEEEeeeeECCEeccceeEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999998764
No 22
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=99.92 E-value=3.7e-24 Score=202.17 Aligned_cols=135 Identities=21% Similarity=0.326 Sum_probs=118.6
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCC----CCCCCceeeecCCCcccc
Q 025641 108 PEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLG----YGGFPKSVCTSVNECICH 183 (250)
Q Consensus 108 R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~----y~gfp~~V~sg~N~~~~H 183 (250)
-.+|+++||+.||+|++|+.++++++.+.++||+|+.||+..+++++.+.++. .+.+ +.+|+..+|+++|++++|
T Consensus 11 ~~i~~~~eI~~~r~Aa~Ia~~~l~~~~~~ikpG~t~~el~~~~~~~i~~~~a~-~~~~~~~~~~g~afpt~vSvN~~v~H 89 (389)
T TIGR00495 11 YSLSNPEVVTKYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAK-IFKKEKEMEKGIAFPTCISVNNCVGH 89 (389)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhh-hhcccccccCCCCCCeEEecCCeeeC
Confidence 46999999999999999999999999999999999999999999999987653 2111 334444467789999999
Q ss_pred CCC--C--CCcCCCCCEEEEEEeeEECCEEeceeeEEEcCC-----CCHHHHHHHHHHHHHHHHHHHHh
Q 025641 184 GIP--D--SRALEDGDTINIDVTVYLNGYHGDTSATFFCGD-----VDDEARNLVKVVCWNFKLHRVLC 243 (250)
Q Consensus 184 g~P--~--~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~-----~~~e~~~l~~~~~eA~~aaia~~ 243 (250)
++| + ++.|++||+|+||+|+.++||++|++|||+||+ ++++++++++++++|+++||+++
T Consensus 90 ~~P~~~d~~~~Lk~GDvVkIDlG~~idGY~aD~arTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~v 158 (389)
T TIGR00495 90 FSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLV 158 (389)
T ss_pred CCCCCCCCCcCcCCCCEEEEEEEEEECCEEEEEEEEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999 2 488999999999999999999999999999995 46789999999999999999986
No 23
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=99.90 E-value=4.3e-23 Score=181.47 Aligned_cols=122 Identities=18% Similarity=0.119 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCC---CCcCC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPG--ITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPD---SRALE 192 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pG--vTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~---~r~Lq 192 (250)
.||.+..+ .++++.+.+.++|| +||.||++.+++++...|.++. .+|+++||+|+|++++|+.|+ +++|+
T Consensus 6 ~~~~~~~~-~~~~~~~~~~i~~G~~~tE~eiaa~~~~~~~~~g~~~~----~~f~~~v~~g~n~~~~H~~p~~~~~r~l~ 80 (224)
T cd01085 6 HIRDGVAL-VEFLAWLEQEVPKGETITELSAADKLEEFRRQQKGYVG----LSFDTISGFGPNGAIVHYSPTEESNRKIS 80 (224)
T ss_pred HHHHHHHH-HHHHHHHHHHhccCCCEeHHHHHHHHHHHHHHcCCCcC----CCcceEEEecCccCcCCCCcCcccCcccC
Confidence 45555555 59999999999999 9999999999988887764431 258999999999999999999 99999
Q ss_pred CCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 193 DGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 193 ~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
+||+|++|+++.++||++|++|||++|+++++++++|+++.+++.++++...
T Consensus 81 ~GD~V~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (224)
T cd01085 81 PDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLVLKGHIALARAKF 132 (224)
T ss_pred CCCEEEEEeCccCCCcccccEEeecCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999887653
No 24
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=99.90 E-value=6.9e-23 Score=175.68 Aligned_cols=122 Identities=30% Similarity=0.433 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHHCCCCCCCCCCCCCCceeeecCCCccccCCCCCCcCCCCC
Q 025641 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQM-IIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGD 195 (250)
Q Consensus 117 e~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~-i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~~r~Lq~GD 195 (250)
|+||+|+++++++++++.+.++||+||.||.+.+.+. +.+.|... .+|+.++++|.|...+|+.|++++|++||
T Consensus 1 e~~R~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~~g~~~-----~~~~~~~~~g~~~~~~~~~~~~~~l~~gd 75 (207)
T PF00557_consen 1 ECMRKAARIADAAMEAAMEALRPGMTEYEIAAAIERAMLRRHGGEE-----PAFPPIVGSGPNTDLPHYTPTDRRLQEGD 75 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCBHHHHHHHHHHHHHHHTTTTE-----ESSESEEEECCCCGETTTBCCSSBESTTE
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHcCCCc-----ccCCceEecCCcceecceeccceeeecCC
Confidence 6899999999999999999999999999999999998 56777543 25788999999999999999999999999
Q ss_pred EEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 196 TINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 196 iV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
+|.+|+++.|+||++|++|||++| ++++++++++.++++++++++++.
T Consensus 76 ~v~id~~~~~~gy~~d~~Rt~~~G-~~~~~~~~~~~~~~~~~~~~~~~~ 123 (207)
T PF00557_consen 76 IVIIDFGPRYDGYHADIARTFVVG-PTPEQRRAYEAAREALEAAIEALR 123 (207)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESS-SHHHHHHHHHHHHHHHHHHHHH-S
T ss_pred cceeeccceeeeeEeeeeeEEEEe-ecccccchhhhhHHHHHhHhhhcc
Confidence 999999999999999999999999 999999999999999999998754
No 25
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=99.90 E-value=1.1e-22 Score=178.59 Aligned_cols=127 Identities=23% Similarity=0.431 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCC--CCC-CCCCC--CCCceeeecCCCccccCCC----
Q 025641 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA--YPS-PLGYG--GFPKSVCTSVNECICHGIP---- 186 (250)
Q Consensus 116 Ie~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga--~ps-~l~y~--gfp~~V~sg~N~~~~Hg~P---- 186 (250)
+++||+|++|++++++++.+.++||+||.||+..++..+.+... ++. ..++. .|+.+ ++.|+..+|+.|
T Consensus 1 ~~~~r~A~~I~~~~~~~~~~~i~pG~te~ei~~~~e~~i~~~~~~~~~~~~~g~~g~~~~~~--v~~n~~~~H~~p~~~~ 78 (228)
T cd01089 1 VTKYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPTC--ISVNNCVCHFSPLKSD 78 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhhcccccCcccccCCCCcCeE--eccCceeecCCCCCCC
Confidence 36899999999999999999999999999999888888877432 221 12222 35544 457999999996
Q ss_pred CCCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCH-----HHHHHHHHHHHHHHHHHHHhc
Q 025641 187 DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDD-----EARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 187 ~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~-----e~~~l~~~~~eA~~aaia~~~ 244 (250)
++++|++||+|++|+|+.|+||++|++|||++|++++ +++++++++.++++++++++.
T Consensus 79 ~~~~l~~Gd~v~iD~g~~~~GY~sD~tRT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~k 141 (228)
T cd01089 79 ATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLR 141 (228)
T ss_pred CCcccCCCCEEEEEEEEEECCEEEEEEEEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhC
Confidence 6889999999999999999999999999999999885 899999999999999999863
No 26
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=99.90 E-value=1.5e-22 Score=194.18 Aligned_cols=129 Identities=21% Similarity=0.213 Sum_probs=114.3
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHC----CCCCCCCCCCCCCceeeecCCCcc
Q 025641 106 SGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDN----GAYPSPLGYGGFPKSVCTSVNECI 181 (250)
Q Consensus 106 ~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~----Ga~ps~l~y~gfp~~V~sg~N~~~ 181 (250)
+.+..+|++||+.||+|++|+.++++++.+.++||+|+.||+..++..+.+. |+.. ..+||+ ++|.|++.
T Consensus 148 ~~~~~~s~~EI~~~R~AaeIa~~vl~~~~~~IkpG~se~EIa~~ie~~ir~~~~~~G~~~----g~aFPt--~vS~N~~a 221 (470)
T PTZ00053 148 RELEKLSEEQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADGLKC----GWAFPT--GCSLNHCA 221 (470)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcCCcc----cCCCCc--eeecCccc
Confidence 3445689999999999999999999999999999999999999988876544 5432 146887 45799999
Q ss_pred ccCCCC---CCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 025641 182 CHGIPD---SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLC 243 (250)
Q Consensus 182 ~Hg~P~---~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~ 243 (250)
+|++|+ +++|++||+|.||+|+.++||++|++|||++| +++.++++++++|+++||+++
T Consensus 222 aH~tP~~gd~~vLk~GDvVkID~G~~vdGYiaD~ArTv~vg---~~~~~L~eAv~eA~~aaI~~~ 283 (470)
T PTZ00053 222 AHYTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAFN---PKYDPLLQATKDATNTGIKEA 283 (470)
T ss_pred cCCCCCCCCCcEecCCCeEEEEEeEEECCEEEeEEEEEEeC---HHHHHHHHHHHHHHHHHHHHh
Confidence 999996 68999999999999999999999999999997 688999999999999999985
No 27
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=99.89 E-value=2.7e-22 Score=168.95 Aligned_cols=123 Identities=28% Similarity=0.460 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCCCCcCCCCC
Q 025641 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGD 195 (250)
Q Consensus 116 Ie~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~~r~Lq~GD 195 (250)
|+.||+|+++++++++.+.+.++||+||.||.+.+++.+.+.|+++ .|+.++.+|.|...+|+.|+++++++||
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~------~~~~~v~~g~~~~~~h~~~~~~~i~~gd 74 (207)
T cd01066 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYP------AGPTIVGSGARTALPHYRPDDRRLQEGD 74 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC------CCCcEEEECccccCcCCCCCCCCcCCCC
Confidence 5789999999999999999999999999999999999999999843 3678888898889999999999999999
Q ss_pred EEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 196 TINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 196 iV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
+|++|+++.++||++|++|||++|+++++++++++.+.++++.+++++.
T Consensus 75 ~v~~d~g~~~~gy~~d~~rt~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 123 (207)
T cd01066 75 LVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREAQEAALAALR 123 (207)
T ss_pred EEEEEeceeECCCccceeceeEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998764
No 28
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=99.88 E-value=9.7e-22 Score=179.49 Aligned_cols=120 Identities=29% Similarity=0.414 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCC---CC
Q 025641 113 EKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPD---SR 189 (250)
Q Consensus 113 ~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~---~r 189 (250)
-+||++||+|++|++++++.+.+.++||+|+.||++.+++.+.+.|+.+ +||+.+ +.|+..+|+.|. ++
T Consensus 2 ~~~i~~~r~A~~I~~~~~~~~~~~i~~G~se~el~~~~e~~~~~~g~~~------aFp~~v--s~n~~~~H~~p~~~d~~ 73 (295)
T TIGR00501 2 IERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEP------AFPCNI--SINECAAHFTPKAGDKT 73 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC------CCCcce--ecCCEeeCCCCCCCcCc
Confidence 4799999999999999999999999999999999999999999999986 488765 478999999985 67
Q ss_pred cCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 025641 190 ALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLC 243 (250)
Q Consensus 190 ~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~ 243 (250)
.|++||+|++|+|+.++||++|++|||++|+ .++++++++.+|+++|++++
T Consensus 74 ~l~~GDvV~iD~G~~~dGY~aD~arT~~vG~---~~~~l~~a~~~A~~aai~~~ 124 (295)
T TIGR00501 74 VFKDGDVVKLDLGAHVDGYIADTAITVDLGD---QYDNLVKAAKDALYTAIKEI 124 (295)
T ss_pred cCCCCCEEEEEEeEEECCEEEEEEEEEEeCc---HHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999995 36899999999999999875
No 29
>PRK08671 methionine aminopeptidase; Provisional
Probab=99.87 E-value=3.5e-21 Score=175.39 Aligned_cols=119 Identities=29% Similarity=0.444 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCC---CCcC
Q 025641 115 GIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPD---SRAL 191 (250)
Q Consensus 115 EIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~---~r~L 191 (250)
+|++||+|++|+.++++.+.+.++||+||.||++.+++.+.+.|+.++ ||+.+ +.|+..+|+.|. +++|
T Consensus 1 ~i~~~r~A~~I~~~~~~~~~~~i~pG~se~ei~~~~~~~i~~~g~~~a------fp~~v--s~n~~~~H~~p~~~d~~~l 72 (291)
T PRK08671 1 ELEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FPCNI--SINEVAAHYTPSPGDERVF 72 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCccC------CCCEE--eeCCCccCCCCCCCCCccc
Confidence 589999999999999999999999999999999999999999998764 77655 467778999986 6889
Q ss_pred CCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 192 EDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 192 q~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
++||+|++|+|+.++||++|++|||++| ++++++++++.+|+++|++++.
T Consensus 73 ~~GDvV~iD~G~~~dGY~aD~arT~~vG---~~~~~l~~a~~~a~~aai~~ik 122 (291)
T PRK08671 73 PEGDVVKLDLGAHVDGYIADTAVTVDLG---GKYEDLVEASEEALEAAIEVVR 122 (291)
T ss_pred CCCCEEEEEEeEEECCEEEEEEEEEEeC---hhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998 4788999999999999998763
No 30
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.85 E-value=1.5e-20 Score=171.20 Aligned_cols=118 Identities=31% Similarity=0.454 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCC---CCcCC
Q 025641 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPD---SRALE 192 (250)
Q Consensus 116 Ie~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~---~r~Lq 192 (250)
+++||+|+++++++++++.+.++||+||.||++.+++.+.+.|+.+ +||. ++|.|+..+|+.|+ +++|+
T Consensus 1 ~~~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G~~~------afp~--~is~n~~~~H~~p~~~d~~~l~ 72 (291)
T cd01088 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGP------AFPV--NLSINECAAHYTPNAGDDTVLK 72 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCCC------CCCc--eeccCCEeeCCCCCCCCCcccC
Confidence 3689999999999999999999999999999999999999999865 3775 46789999999986 48999
Q ss_pred CCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 193 DGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 193 ~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
+||+|.+|+|+.++||++|++|||.+|+ +++++++++++|+++|++++.
T Consensus 73 ~GDvV~iD~G~~~dGY~sD~arT~~vg~---~~~~l~ea~~~A~~~ai~~ik 121 (291)
T cd01088 73 EGDVVKLDFGAHVDGYIADSAFTVDFDP---KYDDLLEAAKEALNAAIKEAG 121 (291)
T ss_pred CCCEEEEEEEEEECCEEEEEEEEEecCh---hHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999985 788999999999999999863
No 31
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=99.84 E-value=7.2e-21 Score=175.81 Aligned_cols=137 Identities=15% Similarity=0.198 Sum_probs=126.9
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCcc
Q 025641 102 IGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 181 (250)
Q Consensus 102 ~~~~~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~ 181 (250)
|.+.+.|.|||+.||+.||.|++|+.+++.+++..++||+.|.++...+......+|.-.. .+|..++|+|.|+.+
T Consensus 177 p~m~E~RviKs~~EieviRya~kISseaH~~vM~~~~pg~~Eyq~eslF~hh~y~~GGcRh----~sYtcIc~sG~ns~v 252 (492)
T KOG2737|consen 177 PILAECRVIKSSLEIEVIRYANKISSEAHIEVMRAVRPGMKEYQLESLFLHHSYSYGGCRH----LSYTCICASGDNSAV 252 (492)
T ss_pred HHHhhheeeCCHHHHHHHHHHHhhccHHHHHHHHhCCchHhHHhHHHHHHHhhhccCCccc----cccceeeecCCCcce
Confidence 4567899999999999999999999999999999999999999999999888888775322 368889999999999
Q ss_pred ccC----CCCCCcCCCCCEEEEEEeeEECCEEeceeeEEEc-CCCCHHHHHHHHHHHHHHHHHHHH
Q 025641 182 CHG----IPDSRALEDGDTINIDVTVYLNGYHGDTSATFFC-GDVDDEARNLVKVVCWNFKLHRVL 242 (250)
Q Consensus 182 ~Hg----~P~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~V-G~~~~e~~~l~~~~~eA~~aaia~ 242 (250)
.|+ .|+++.+|+||.+++|+|+.|.+|.+|+|++|.+ |+.+++|+.+|+++..+++++.++
T Consensus 253 LHYgha~apNd~~iqdgd~cLfDmGaey~~yaSDITcsFP~nGKFTadqk~VYnaVLda~navm~a 318 (492)
T KOG2737|consen 253 LHYGHAGAPNDRTIQDGDLCLFDMGAEYHFYASDITCSFPVNGKFTADQKLVYNAVLDASNAVMEA 318 (492)
T ss_pred eeccccCCCCCcccCCCCEEEEecCcceeeeecccceeccCCCccchhHHHHHHHHHHHHHHHHHh
Confidence 998 8999999999999999999999999999999999 999999999999999999998765
No 32
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.84 E-value=4.7e-21 Score=178.41 Aligned_cols=137 Identities=19% Similarity=0.185 Sum_probs=130.5
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCcccc
Q 025641 104 IVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICH 183 (250)
Q Consensus 104 ~~~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~H 183 (250)
+.++|.||||.|++.||+||.|+.+++-..+-.-+++..|..+++.++..++..|++- ..||+.|+.|.|+...|
T Consensus 222 i~~lRlIKSpaEl~~Mr~a~~I~sq~~~~~m~~sr~~~~E~~l~a~~eye~r~rGad~-----~AYpPVVAgG~na~tIH 296 (488)
T KOG2414|consen 222 IERLRLIKSPAELELMREACNIASQTFSETMFGSRDFHNEAALSALLEYECRRRGADR-----LAYPPVVAGGKNANTIH 296 (488)
T ss_pred HHHHHccCCHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhhHhhhhhhheeecCccc-----cccCCeeecCcccceEE
Confidence 4578999999999999999999999999988888999999999999999999999975 36999999999999999
Q ss_pred CCCCCCcCCCCCEEEEEEeeEECCEEeceeeEEEc-CCCCHHHHHHHHHHHHHHHHHHHHhcc
Q 025641 184 GIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFC-GDVDDEARNLVKVVCWNFKLHRVLCFL 245 (250)
Q Consensus 184 g~P~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~V-G~~~~e~~~l~~~~~eA~~aaia~~~~ 245 (250)
+.-++..|.++|.|++|.|+.++||.+|+||||.+ |..++.|++||+++...++..|..|+-
T Consensus 297 Y~~Nnq~l~d~emVLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~c~~ 359 (488)
T KOG2414|consen 297 YVRNNQLLKDDEMVLVDAGCELGGYVSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCKP 359 (488)
T ss_pred EeecccccCCCcEEEEecCcccCceEccceeccCCCCccCcHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999 999999999999999999999999974
No 33
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=99.83 E-value=4.6e-20 Score=164.20 Aligned_cols=126 Identities=13% Similarity=0.142 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hhcCC--CCHHHHHHHHHHHHHHCCCC-----CCCCCCCCCCceeeecCCC-ccc
Q 025641 116 IECMRVSGRLAAQVLEYAGT-----LVKPG--ITTDEIDKAVHQMIIDNGAY-----PSPLGYGGFPKSVCTSVNE-CIC 182 (250)
Q Consensus 116 Ie~mR~A~~ia~~~l~~a~~-----~I~pG--vTe~EI~~~v~~~i~~~Ga~-----ps~l~y~gfp~~V~sg~N~-~~~ 182 (250)
++.||+|++++..+|+.... .|.+| +|+.+|+..++..+.+.+.. +..++ .+|+++|++|.|. ..+
T Consensus 1 ~~~~~~a~~~~~~~~~~~~~~~~~~~id~~~~~t~~~l~~~~e~~~~~~~~~~~~~~~~~~~-~~y~~iv~sG~~~~~l~ 79 (243)
T cd01091 1 LNNIKKASDATVDVLKKFFVDEVEEIIDQEKKVTHSKLSDKVEKAIEDKKKYKAKLDPEQLD-WCYPPIIQSGGNYDLLK 79 (243)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhCchhhhcCCCHHHcC-cccCCeEeECcCcccCC
Confidence 46899999999999975544 89999 99999999999999988744 22222 3799999999999 899
Q ss_pred cCCCCCCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 025641 183 HGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLC 243 (250)
Q Consensus 183 Hg~P~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~ 243 (250)
|+.++++.++.||+|++|+|+.|+|||+|++|||++| ++++++++|+++.++++++++++
T Consensus 80 h~~~s~~~~~~~~~vl~d~G~~y~gY~sditRT~~v~-p~~~~~~~y~~~~~a~~~~i~~l 139 (243)
T cd01091 80 SSSSSDKLLYHFGVIICSLGARYKSYCSNIARTFLID-PTSEQQKNYNFLLALQEEILKEL 139 (243)
T ss_pred CCCCCccccCCCCEEEEEeCcccCCEeecceEEEEcC-CCHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999997 79999999999999999999976
No 34
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=99.37 E-value=5.3e-12 Score=116.54 Aligned_cols=133 Identities=22% Similarity=0.408 Sum_probs=108.1
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCC--CCCCCCC-C--CCCCceeeecCCCccc
Q 025641 108 PEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG--AYPSPLG-Y--GGFPKSVCTSVNECIC 182 (250)
Q Consensus 108 R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~G--a~ps~l~-y--~gfp~~V~sg~N~~~~ 182 (250)
-.|-++.-+.++|-|++|+..+++.+.+.+.||.+..||+.....++.+.- .|...-+ + -.||+ |+++|+++|
T Consensus 13 ~tia~~~vvtKYk~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfPT--~Isvnncv~ 90 (398)
T KOG2776|consen 13 KTIANDSVVTKYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDFEKGIAFPT--SISVNNCVC 90 (398)
T ss_pred cccccHHHHhhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHHHHHHHHhhhhhhhccccccc--eecccceee
Confidence 356688899999999999999999999999999999999999988887542 1222111 1 24775 557999999
Q ss_pred cCCCC----CCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCC-----HHHHHHHHHHHHHHHHHHHH
Q 025641 183 HGIPD----SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVD-----DEARNLVKVVCWNFKLHRVL 242 (250)
Q Consensus 183 Hg~P~----~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~-----~e~~~l~~~~~eA~~aaia~ 242 (250)
|+.|- +..|++||+|.||+|+..|||.+.++.|++|+.++ ....+++.++..|.++|+.+
T Consensus 91 h~sPlksd~~~~Lk~GDvVKIdLG~HiDGfiA~vaHT~VV~~~~~~~vtG~kADvI~AAh~A~eaa~rl 159 (398)
T KOG2776|consen 91 HFSPLKSDADYTLKEGDVVKIDLGVHIDGFIALVAHTIVVGPAPDTPVTGRKADVIAAAHLAAEAALRL 159 (398)
T ss_pred ccCcCCCCCcccccCCCEEEEEeeeeeccceeeeeeeEEeccCCCCcccCchhHHHHHHHHHHHHHHHH
Confidence 99883 57899999999999999999999999999998654 34567777777777777765
No 35
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=99.26 E-value=3e-11 Score=119.82 Aligned_cols=146 Identities=16% Similarity=0.179 Sum_probs=118.0
Q ss_pred CCccCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHH-----HHhhcCC--CCHHHHHHHHHHHHHHCCC----CCC
Q 025641 94 PYVNSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYA-----GTLVKPG--ITTDEIDKAVHQMIIDNGA----YPS 162 (250)
Q Consensus 94 ~y~~~~~~~~~~~~R~VKs~eEIe~mR~A~~ia~~~l~~a-----~~~I~pG--vTe~EI~~~v~~~i~~~Ga----~ps 162 (250)
.|...++.-.+..+.+||++.||+.+|+|+.++..+|... .+.|..| ||+..+...++..+.+... .|.
T Consensus 121 ~fn~vDis~~ls~l~avKDd~Ei~~irksa~~s~~vm~k~~~~~~~~aiD~ekkvthskLsD~~e~~I~~~k~s~~l~~~ 200 (960)
T KOG1189|consen 121 GFNKVDISLGLSKLFAVKDDEEIANIRKSAAASSAVMNKYLVDELVEAIDEEKKVTHSKLSDLMESAIEDKKYSPGLDPD 200 (960)
T ss_pred CCceeehhhhhhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhccccCcccCcc
Confidence 3334444445678899999999999999999999999843 3345444 7888899988888876543 333
Q ss_pred CCCCCCCCceeeecCC-CccccCCCCCCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 025641 163 PLGYGGFPKSVCTSVN-ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRV 241 (250)
Q Consensus 163 ~l~y~gfp~~V~sg~N-~~~~Hg~P~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia 241 (250)
.+. +.||+++.+|.+ +..+....++..| + +|+..+|++|++||+.++|||++ .|+.++++.|+....++++.+.
T Consensus 201 ~~d-~cY~PIiqSGg~ydlk~sa~s~~~~L--~-~I~cs~G~RynsYCSNv~RT~Li-dpssemq~nY~fLl~aqe~il~ 275 (960)
T KOG1189|consen 201 LLD-MCYPPIIQSGGKYDLKPSAVSDDNHL--H-VILCSLGIRYNSYCSNVSRTYLI-DPSSEMQENYEFLLAAQEEILK 275 (960)
T ss_pred ccc-cccChhhhcCCccccccccccccccc--c-eEEeeccchhhhhhccccceeee-cchHHHHHHHHHHHHHHHHHHH
Confidence 333 479999999877 5667777888888 4 99999999999999999999999 6899999999999999999999
Q ss_pred Hhc
Q 025641 242 LCF 244 (250)
Q Consensus 242 ~~~ 244 (250)
+|.
T Consensus 276 ~lr 278 (960)
T KOG1189|consen 276 LLR 278 (960)
T ss_pred hhc
Confidence 764
No 36
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.22 E-value=4.5e-11 Score=116.46 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=113.8
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHh----hcCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeee
Q 025641 102 IGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTL----VKPG--ITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175 (250)
Q Consensus 102 ~~~~~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~----I~pG--vTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~s 175 (250)
+++..++++|+++|++.||.|----..++-+...+ +..| +||.+++..++++-..+..+-. ..|+++.++
T Consensus 299 Spi~~~kAiKN~~E~~gmr~shirD~~Alve~~~wle~~~~~g~~itE~~~A~kle~fR~~~~~fmg----lSFeTIS~s 374 (606)
T KOG2413|consen 299 SPISRAKAIKNDDELKGMRNSHIRDGAALVEYFAWLEKELHKGYTITEYDAADKLEEFRSRQDHFMG----LSFETISSS 374 (606)
T ss_pred CHHHHHHHhcChHHhhhhhhcchhhHHHHHHHHHHHhhhhhcCcccchhhHHHHHHHHHHhhccccC----cCcceeecc
Confidence 34566789999999999998875555555554444 4456 8999999999988777654321 359999866
Q ss_pred -cCCCccccCCCC---CCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 025641 176 -SVNECICHGIPD---SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLCF 244 (250)
Q Consensus 176 -g~N~~~~Hg~P~---~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~~ 244 (250)
|+|.+++|+.|. ++.+.+..+.++|-|+.|.-=.+|+|||+.+|+|++++++.|..+.+..-+...+.|
T Consensus 375 ~G~NgAviHYsP~~e~n~~i~~~kiyL~DSGaQY~DGTTDvTRT~HfgePs~eek~~yT~VLkGhi~la~~vF 447 (606)
T KOG2413|consen 375 VGPNGAVIHYSPPAETNRIVSPDKIYLCDSGAQYLDGTTDVTRTVHFGEPTAEEKEAYTLVLKGHIALARAVF 447 (606)
T ss_pred CCCCceeeecCCCccccceecCceEEEEccCcccccCccceeEEEecCCCCHHHHHHHHHHHHhhhHhhhccc
Confidence 999999999986 468999999999999999888899999999999999999999999988877666655
No 37
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=99.03 E-value=2.3e-09 Score=97.42 Aligned_cols=124 Identities=23% Similarity=0.310 Sum_probs=103.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----HCCCCCCCCCCCCCCceeeecCCCccccCCC
Q 025641 111 HDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII----DNGAYPSPLGYGGFPKSVCTSVNECICHGIP 186 (250)
Q Consensus 111 Ks~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~----~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P 186 (250)
-..+..+-+|+|+++.+++-.++.+.|+||||..||+..++...+ +.|... ..+||+.+ |-|.+..|+.|
T Consensus 80 ~~~~i~~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e~gl~a----Gi~FPtG~--SlN~cAAHyTp 153 (397)
T KOG2775|consen 80 TESDIYQDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILENGLNA----GIGFPTGC--SLNHCAAHYTP 153 (397)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHhccccc----cccCCCcc--cccchhhhcCC
Confidence 345567789999999999999999999999999999999886543 444432 13688754 68999999998
Q ss_pred C---CCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 025641 187 D---SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHRVLC 243 (250)
Q Consensus 187 ~---~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aaia~~ 243 (250)
+ ..+|+.+|+..||+|...+|-..|++-|+.+ ++....|..++++|.+.+|.-.
T Consensus 154 NaGd~tVLqydDV~KiDfGthi~GrIiDsAFTv~F---~p~~d~Ll~AvreaT~tGIkea 210 (397)
T KOG2775|consen 154 NAGDKTVLKYDDVMKIDFGTHIDGRIIDSAFTVAF---NPKYDPLLAAVREATNTGIKEA 210 (397)
T ss_pred CCCCceeeeecceEEEeccccccCeEeeeeeEEee---CccccHHHHHHHHHHhhhhhhc
Confidence 6 4689999999999999999999999999998 4567789999999999998753
No 38
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=98.65 E-value=7.3e-08 Score=94.76 Aligned_cols=143 Identities=17% Similarity=0.199 Sum_probs=105.9
Q ss_pred CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHh---hcCC---CCHHHHHHHHHHHHHHCCC------CCC----
Q 025641 99 QKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTL---VKPG---ITTDEIDKAVHQMIIDNGA------YPS---- 162 (250)
Q Consensus 99 ~~~~~~~~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~---I~pG---vTe~EI~~~v~~~i~~~Ga------~ps---- 162 (250)
++.--+..+-.+|+.+||+.+|.+.+.....|++.... +.-| +|...+...++..+-+-.. .-+
T Consensus 159 DvslgLsk~~~~KD~~E~an~~~ss~~s~~~M~~~~~em~~~~D~~~kit~~KlsD~mes~iddv~f~q~~s~~l~~~~~ 238 (1001)
T COG5406 159 DVSLGLSKMFLTKDAEEIANCRASSAASSVLMRYFVKEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQTKSLKLGDIDL 238 (1001)
T ss_pred hhhhhhhHHhccccHHHHhhccccchHHHHHHHHHHHHHHHHHhhhhhhccchHHHHhhhhcchhhhhhhcCccccccch
Confidence 33334567889999999999999999999999854433 2222 5666777666654432111 000
Q ss_pred -CCCCCCCCceeeecCC-CccccCCCCCCcCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 025641 163 -PLGYGGFPKSVCTSVN-ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVVCWNFKLHR 240 (250)
Q Consensus 163 -~l~y~gfp~~V~sg~N-~~~~Hg~P~~r~Lq~GDiV~IDvg~~~~GY~aD~sRT~~VG~~~~e~~~l~~~~~eA~~aai 240 (250)
.+.| .|.+++++|.. +..+..+..++.|. ||+|.+.+|.+|+|||+.++|||+. +|+.|+++-|+-+..+|+...
T Consensus 239 d~lew-~ytpiiqsg~~~Dl~psa~s~~~~l~-gd~vl~s~GiRYn~YCSn~~RT~l~-dp~~e~~~Ny~fl~~lQk~i~ 315 (1001)
T COG5406 239 DQLEW-CYTPIIQSGGSIDLTPSAFSFPMELT-GDVVLLSIGIRYNGYCSNMSRTILT-DPDSEQQKNYEFLYMLQKYIL 315 (1001)
T ss_pred hhhhh-hcchhhccCceeecccccccCchhhc-CceEEEEeeeeeccccccccceEEe-CCchHhhhhHHHHHHHHHHHH
Confidence 1223 47788888764 55566666677764 8999999999999999999999999 689999999999999999988
Q ss_pred HHhc
Q 025641 241 VLCF 244 (250)
Q Consensus 241 a~~~ 244 (250)
.+|.
T Consensus 316 ~~~r 319 (1001)
T COG5406 316 GLVR 319 (1001)
T ss_pred hhcC
Confidence 8763
No 39
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=97.88 E-value=0.00031 Score=58.75 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCCCCcCCCCCE
Q 025641 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDT 196 (250)
Q Consensus 117 e~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~~r~Lq~GDi 196 (250)
+.++++.+.+.++++.+.+.++||++..||...+++.+.+.|...... +.....+.....+...-...++.+|++|.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~~~g~~~~~~--~~~Gh~iG~~~~e~~~~~~~~~~~l~~gmv 179 (207)
T cd01066 102 DEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFG--HRTGHGIGLEIHEPPVLKAGDDTVLEPGMV 179 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCccccCC--CCCccccCcccCCCCCcCCCCCCCcCCCCE
Confidence 578889999999999999999999999999999999999998742111 112222222222211101124679999999
Q ss_pred EEEEEeeEEC-CEEeceeeEEEcCC
Q 025641 197 INIDVTVYLN-GYHGDTSATFFCGD 220 (250)
Q Consensus 197 V~IDvg~~~~-GY~aD~sRT~~VG~ 220 (250)
+.++.+.+.. ++..-+.-|++|.+
T Consensus 180 ~~iep~~~~~~~~g~~~ed~v~vt~ 204 (207)
T cd01066 180 FAVEPGLYLPGGGGVRIEDTVLVTE 204 (207)
T ss_pred EEECCEEEECCCcEEEeeeEEEEeC
Confidence 9999999987 58888899999854
No 40
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=97.61 E-value=0.001 Score=56.47 Aligned_cols=100 Identities=22% Similarity=0.258 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCC-CCCcCCCCC
Q 025641 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP-DSRALEDGD 195 (250)
Q Consensus 117 e~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P-~~r~Lq~GD 195 (250)
+.+|++.+.+.++++.+.+.++||++..||.+.+++.+.+.|..+.... .....+.....+. +.-.+ ++++|++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~~~g~~~~~~~--~~Gh~iG~~~~e~-p~i~~~~~~~l~~gm 179 (208)
T cd01092 103 DELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGEYFIH--RTGHGVGLEVHEA-PYISPGSDDVLEEGM 179 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCccccCCC--CCccccCcccCcC-CCcCCCCCCCcCCCC
Confidence 3667889999999999999999999999999999999999997432111 1111221111111 11122 467899999
Q ss_pred EEEEEEeeEECCE-EeceeeEEEcC
Q 025641 196 TINIDVTVYLNGY-HGDTSATFFCG 219 (250)
Q Consensus 196 iV~IDvg~~~~GY-~aD~sRT~~VG 219 (250)
++.|+.+.+..|+ -.-+.-|++|.
T Consensus 180 v~~iep~~~~~~~~g~~~ed~v~vt 204 (208)
T cd01092 180 VFTIEPGIYIPGKGGVRIEDDVLVT 204 (208)
T ss_pred EEEECCeEEecCCCEEEeeeEEEEC
Confidence 9999999887554 33467788874
No 41
>PRK05716 methionine aminopeptidase; Validated
Probab=97.45 E-value=0.002 Score=56.87 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCC--ccccC-CC-CCCcCCC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNE--CICHG-IP-DSRALED 193 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~--~~~Hg-~P-~~r~Lq~ 193 (250)
..|++.+.+.++.+.+.+.++||++-.||+..+++.+.+.|..+. .++.| ..+.....+ .+.++ .+ ++.+|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~~g~~~~-~~~~G--HgiG~~~~e~p~~~~~~~~~~~~~le~ 195 (252)
T PRK05716 119 EDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVV-REYCG--HGIGRKFHEEPQIPHYGAPGDGPVLKE 195 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeee-cCccc--cccCCccCCCCccCcCCCCCCCCEecC
Confidence 456778888889999999999999999999999999999987542 12222 222222211 11221 12 3678999
Q ss_pred CCEEEEEEeeEE------------------CCEEeceeeEEEcCC
Q 025641 194 GDTINIDVTVYL------------------NGYHGDTSATFFCGD 220 (250)
Q Consensus 194 GDiV~IDvg~~~------------------~GY~aD~sRT~~VG~ 220 (250)
|+++.|+.+.+. +++..-++-|++|.+
T Consensus 196 Gmv~~vEp~i~~~~~~~~~~~~~~~~~~~~g~~g~~~ed~v~Vt~ 240 (252)
T PRK05716 196 GMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTE 240 (252)
T ss_pred CCEEEEccEEEcCCCceEEcCCCCEEEccCCCcEEeeeeEEEEcC
Confidence 999999988764 235556778888864
No 42
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=97.39 E-value=0.0032 Score=55.56 Aligned_cols=100 Identities=18% Similarity=0.091 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCc--cccCC--CCCCcCCC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNEC--ICHGI--PDSRALED 193 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~--~~Hg~--P~~r~Lq~ 193 (250)
.++++.+.+.++++.+.+.++||++-.|++..+.+.+.+.|..+. ..+ +...+.....+. ++++. .++.+|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~g~~~~-~~~--~GHgiG~~~~e~p~i~~~~~~~~~~~l~~ 193 (247)
T TIGR00500 117 EAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVV-REY--CGHGIGRKFHEEPQIPNYGKKFTNVRLKE 193 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec-cCc--cCCccCcccCCCCccCCcCcCCCCCEecC
Confidence 356777888889999999999999999999999999999987542 122 222233222221 12211 23678999
Q ss_pred CCEEEEEEeeEE------------------CCEEeceeeEEEcCC
Q 025641 194 GDTINIDVTVYL------------------NGYHGDTSATFFCGD 220 (250)
Q Consensus 194 GDiV~IDvg~~~------------------~GY~aD~sRT~~VG~ 220 (250)
|+++.|+.+.+. +++..-+..|++|.+
T Consensus 194 gmv~~iEp~i~~~~~~~~~~~~~~~~~~~~~~~g~ried~v~Vt~ 238 (247)
T TIGR00500 194 GMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITD 238 (247)
T ss_pred CCEEEEeeEEEcCCCcEEECCCCCEEEccCCCeEEEEeEEEEEcC
Confidence 999999988765 234555677888854
No 43
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=97.38 E-value=0.0035 Score=54.84 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCc--cc-cCCC-CCCcCCC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNEC--IC-HGIP-DSRALED 193 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~--~~-Hg~P-~~r~Lq~ 193 (250)
.+|++.+.+.++.+.+.+.++||++-.|++..+++.+.+.|.... ..+.++ .+.....+. +. +..+ ++.+|++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~G~~~~-~~~~GH--giG~~~~e~p~~~~~~~~~~~~~le~ 185 (238)
T cd01086 109 EAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVV-REFGGH--GIGRKFHEEPQIPNYGRPGTGPKLKP 185 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCccee-cCcccc--CCCCccccCCCcCCccCCCCCCEecC
Confidence 356788888899999999999999999999999999999987542 222222 222111111 11 2223 3678999
Q ss_pred CCEEEEEEeeEE------------------CCEEeceeeEEEcCC
Q 025641 194 GDTINIDVTVYL------------------NGYHGDTSATFFCGD 220 (250)
Q Consensus 194 GDiV~IDvg~~~------------------~GY~aD~sRT~~VG~ 220 (250)
|+++.++.+.+. +.+..-+..|++|.+
T Consensus 186 Gmv~~iep~i~~~~~~~~~~~~~~~~~~~~g~~g~~~edtv~Vte 230 (238)
T cd01086 186 GMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITE 230 (238)
T ss_pred CCEEEEeeEEECCCCceEECCCCCEEEcCCCCEEEeeeeEEEEcC
Confidence 999999998875 123444567888854
No 44
>PRK15173 peptidase; Provisional
Probab=97.37 E-value=0.0026 Score=58.96 Aligned_cols=100 Identities=11% Similarity=0.087 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceee--ecCCCccccCC-CCCCcCCCC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVC--TSVNECICHGI-PDSRALEDG 194 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~--sg~N~~~~Hg~-P~~r~Lq~G 194 (250)
..|++.+++.++++.+.+.++||++-.||+..+.+.+.+.|.......+ +...+. .|.++. |... .++.+|++|
T Consensus 203 ~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~~~~G~~~~~~~~--~GHGiG~~lg~~E~-P~i~~~~~~~Le~G 279 (323)
T PRK15173 203 ITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGH--LGHGNGVFLGLEES-PFVSTHATESFTSG 279 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCC--CCCcCCCCCCcCCC-CCCCCCCCCccCCC
Confidence 4577888899999999999999999999999999999999864322111 122222 233321 1212 245789999
Q ss_pred CEEEEEEeeEECCE-EeceeeEEEcCC
Q 025641 195 DTINIDVTVYLNGY-HGDTSATFFCGD 220 (250)
Q Consensus 195 DiV~IDvg~~~~GY-~aD~sRT~~VG~ 220 (250)
.++.|+.+.+..|. -.-+.-|++|.+
T Consensus 280 MV~tiEPgiy~~g~ggvriEDtvlVTe 306 (323)
T PRK15173 280 MVLSLETPYYGYNLGSIMIEDMILINK 306 (323)
T ss_pred CEEEECCEEEcCCCcEEEEeeEEEEcC
Confidence 99999998875443 356788999854
No 45
>PRK14575 putative peptidase; Provisional
Probab=97.27 E-value=0.0037 Score=59.71 Aligned_cols=100 Identities=11% Similarity=0.087 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceee--ecCCCccccCC-CCCCcCCCC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVC--TSVNECICHGI-PDSRALEDG 194 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~--sg~N~~~~Hg~-P~~r~Lq~G 194 (250)
..|++.+++.++.+.+.+.++||++-.||++.+.+.+.+.|.......+ ++..+. .|..+. +... -++.+|++|
T Consensus 286 ~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~~~~~G~~~~~~~~--~GHGiG~~lg~~e~-P~i~~~~~~~Le~G 362 (406)
T PRK14575 286 ITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGH--LGHGNGVFLGLEES-PFVSTHATESFTSG 362 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCC--CCCcccCCCCCccC-CCCCCCCCCCcCCC
Confidence 3567788888999999999999999999999999999998864322111 222232 233221 1111 245789999
Q ss_pred CEEEEEEeeEECCE-EeceeeEEEcCC
Q 025641 195 DTINIDVTVYLNGY-HGDTSATFFCGD 220 (250)
Q Consensus 195 DiV~IDvg~~~~GY-~aD~sRT~~VG~ 220 (250)
+++.+..+.+..|. -.-++-|++|.+
T Consensus 363 Mv~tiEpgiy~~g~gGvriEDtvlVT~ 389 (406)
T PRK14575 363 MVLSLETPYYGYNLGSIMIEDMILINK 389 (406)
T ss_pred CEEEECCeeecCCCcEEEEEeEEEEcC
Confidence 99999999876553 356789999954
No 46
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=97.25 E-value=0.0054 Score=53.95 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccC----C--CCCCcC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHG----I--PDSRAL 191 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg----~--P~~r~L 191 (250)
..|++.+++.++++.+.+.++||++-.||++.+.+.+.++|..... . +++...+....++. +|+ + .++.+|
T Consensus 110 ~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~~G~~~~~-~-~~~GHgiGl~~he~-~~~~g~~~~~~~~~~L 186 (228)
T cd01090 110 AHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLLRYR-T-FGYGHSFGVLSHYY-GREAGLELREDIDTVL 186 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCccc-c-cccCcccccccccC-CCccccccCCCCCCcc
Confidence 3677888999999999999999999999999999999999864321 1 12233333222222 221 1 135889
Q ss_pred CCCCEEEEEEeeEEC----CE-EeceeeEEEcCC
Q 025641 192 EDGDTINIDVTVYLN----GY-HGDTSATFFCGD 220 (250)
Q Consensus 192 q~GDiV~IDvg~~~~----GY-~aD~sRT~~VG~ 220 (250)
++|+++.++.+.+.. |. -.-++.|++|.+
T Consensus 187 e~GMV~~iEP~i~~~~~~~g~gG~ried~v~Vt~ 220 (228)
T cd01090 187 EPGMVVSMEPMIMLPEGQPGAGGYREHDILVINE 220 (228)
T ss_pred CCCCEEEECCEEeecccCCCCcEEEeeeEEEECC
Confidence 999999999998863 32 223778888864
No 47
>PRK14576 putative endopeptidase; Provisional
Probab=97.22 E-value=0.0049 Score=58.83 Aligned_cols=100 Identities=12% Similarity=0.055 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceee--ecCCCccccCCC-CCCcCCCC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVC--TSVNECICHGIP-DSRALEDG 194 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~--sg~N~~~~Hg~P-~~r~Lq~G 194 (250)
..+++-+++.++++.+.+.++||++-.|++..+.+.+.+.|.......+ +...+. .|..+ .|.-.+ ++.+|++|
T Consensus 285 ~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~~~G~~~~~~~~--~GHgiG~~l~~~e-~P~i~~~~~~~Le~G 361 (405)
T PRK14576 285 LTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSGLPHYNRGH--LGHGDGVFLGLEE-VPFVSTQATETFCPG 361 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCC--CCCCCCCCCCcCc-CCCcCCCCCCccCCC
Confidence 4667888889999999999999999999999999999999864322221 222332 33332 222223 36789999
Q ss_pred CEEEEEEeeEECC-EEeceeeEEEcCC
Q 025641 195 DTINIDVTVYLNG-YHGDTSATFFCGD 220 (250)
Q Consensus 195 DiV~IDvg~~~~G-Y~aD~sRT~~VG~ 220 (250)
.++.++.+.+..| .-.-+.-|++|.+
T Consensus 362 Mv~~vEp~~y~~g~ggvriEDtvlVTe 388 (405)
T PRK14576 362 MVLSLETPYYGIGVGSIMLEDMILITD 388 (405)
T ss_pred CEEEECCceeecCCCEEEEeeEEEECC
Confidence 9999998776544 2334778999854
No 48
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=97.21 E-value=0.004 Score=59.10 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCc----cccCCC-CCCcCC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNEC----ICHGIP-DSRALE 192 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~----~~Hg~P-~~r~Lq 192 (250)
.++++.+++.++.+.+.+.++||+|-.||++.+.+.+.+.|.... ...|+ .+..+.... .+.-.| ++.+|+
T Consensus 271 ~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~~~~~~~~~~~G~~~~--h~~Gh--giGl~~~~~~~e~~~~l~~~~~~~L~ 346 (391)
T TIGR02993 271 AFLDAEKAVLEGMEAGLEAAKPGNTCEDIANAFFAVLKKYGIHKD--SRTGY--PIGLSYPPDWGERTMSLRPGDNTVLK 346 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccC--CCcee--eeccCcCCCCCCccccccCCCCceec
Confidence 466788899999999999999999999999999999999986431 11222 222221100 011122 357899
Q ss_pred CCCEEEEEEeeEECCEEeceeeEEEcCC
Q 025641 193 DGDTINIDVTVYLNGYHGDTSATFFCGD 220 (250)
Q Consensus 193 ~GDiV~IDvg~~~~GY~aD~sRT~~VG~ 220 (250)
+|+++.+.-+.+..|+-.-+.-|++|.+
T Consensus 347 ~GMv~tvEpgiy~~~~Gvried~v~VT~ 374 (391)
T TIGR02993 347 PGMTFHFMTGLWMEDWGLEITESILITE 374 (391)
T ss_pred CCCEEEEcceeEeCCCCeEEeeEEEECC
Confidence 9999999999998877667788899854
No 49
>PRK09795 aminopeptidase; Provisional
Probab=97.19 E-value=0.0069 Score=56.70 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCC-CCCcC
Q 025641 113 EKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP-DSRAL 191 (250)
Q Consensus 113 ~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P-~~r~L 191 (250)
+++-+.++++-+++.++.+.+.+.++||++-.||++.+++.+.+.|...... ++....|.....+. |.-.| ++.+|
T Consensus 236 ~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v~~~~~~~~~~~g~~~~~~--h~~GHgiGl~~he~-p~i~~~~~~~l 312 (361)
T PRK09795 236 SAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFG--HNTGHAIGIEVHED-PRFSPRDTTTL 312 (361)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCccCC--CCCCccCCccccCC-CCcCCCCCCCc
Confidence 5555568889999999999999999999999999999999999988643211 11222232222221 22122 36889
Q ss_pred CCCCEEEEEEeeEECCE-EeceeeEEEcCC
Q 025641 192 EDGDTINIDVTVYLNGY-HGDTSATFFCGD 220 (250)
Q Consensus 192 q~GDiV~IDvg~~~~GY-~aD~sRT~~VG~ 220 (250)
++|+++.|+.+.+..|+ -.-+.-|++|.+
T Consensus 313 ~~gmv~~iEpgiy~~~~~gvriEd~v~vt~ 342 (361)
T PRK09795 313 QPGMLLTVEPGIYLPGQGGVRIEDVVLVTP 342 (361)
T ss_pred CCCCEEEECCEEEeCCCCEEEEeeEEEECC
Confidence 99999999999987664 345678888853
No 50
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=97.15 E-value=0.0043 Score=55.37 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCC-CCCcCCCCC
Q 025641 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP-DSRALEDGD 195 (250)
Q Consensus 117 e~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P-~~r~Lq~GD 195 (250)
+..|++.+++.++.+++.+.++||++-.||+..+.+.+.+.|..-...-.++....+.....+....-.+ ++++|++|.
T Consensus 119 ~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~~~~~~~~~~~~~~GHgiGle~hE~~~~l~~~~~~~L~~GM 198 (243)
T cd01091 119 SEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKKKPELEPNFTKNLGFGIGLEFRESSLIINAKNDRKLKKGM 198 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhChhHHHhCcCCcccccCcccccCccccCCCCCCCcCCCC
Confidence 3567788899999999999999999999999999999988762111000012222333333332111112 357899999
Q ss_pred EEEEEEeeE-EC----------CEEeceeeEEEcCC
Q 025641 196 TINIDVTVY-LN----------GYHGDTSATFFCGD 220 (250)
Q Consensus 196 iV~IDvg~~-~~----------GY~aD~sRT~~VG~ 220 (250)
++.|..|.+ +. .|-.-++-|++|.+
T Consensus 199 vf~vepGi~~~~~~~~~~~~~~~~gv~ieDtV~Vt~ 234 (243)
T cd01091 199 VFNLSIGFSNLQNPEPKDKESKTYALLLSDTILVTE 234 (243)
T ss_pred EEEEeCCcccccCccccCccCCeeEEEEEEEEEEcC
Confidence 999999987 32 57777899999964
No 51
>PRK12897 methionine aminopeptidase; Reviewed
Probab=97.13 E-value=0.005 Score=54.63 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCc--cccCC-C-CCCcCCC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNEC--ICHGI-P-DSRALED 193 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~--~~Hg~-P-~~r~Lq~ 193 (250)
..|++.+++.++++.+.+.++||++..|++..+.+.+.+.|.... .++ +...|..+..+. +.+.. + ++.+|++
T Consensus 118 ~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~~~~~~~~g~~~~-~~~--~GHgiGl~~hE~P~i~~~~~~~~~~~l~~ 194 (248)
T PRK12897 118 EAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVA-RDF--TGHGIGKEIHEEPAIFHFGKQGQGPELQE 194 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHcCCccC-CCe--EECccCCcccCCCccCCCCCCCCCCCcCC
Confidence 356667888899999999999999999999999999999986432 122 122232222221 12221 2 3468999
Q ss_pred CCEEEEEEeeEE-----------------CC-EEeceeeEEEcCC
Q 025641 194 GDTINIDVTVYL-----------------NG-YHGDTSATFFCGD 220 (250)
Q Consensus 194 GDiV~IDvg~~~-----------------~G-Y~aD~sRT~~VG~ 220 (250)
|+++.+..+.+. +| +..-++.|++|.+
T Consensus 195 Gmv~tiEP~~~~~~~~~~~~~~~~~~~~~~g~~g~r~edtv~Vt~ 239 (248)
T PRK12897 195 GMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITK 239 (248)
T ss_pred CCEEEECCeEecCCCceEECCCCcEEEcCCCCeEeecceEEEEeC
Confidence 999999988872 44 5667788888854
No 52
>PRK12318 methionine aminopeptidase; Provisional
Probab=97.13 E-value=0.0064 Score=55.68 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCc--cccCCC-CCCcCCCC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNEC--ICHGIP-DSRALEDG 194 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~--~~Hg~P-~~r~Lq~G 194 (250)
.+|+..+++.++++.+.+.++||++..||+..+.+.+.+.|.... ..+ +...|.....+. +.+..+ ++.+|++|
T Consensus 159 ~~~~~~~~~~~a~~~~i~~~rpG~~~~dv~~a~~~~~~~~G~~~~-~~~--~GHgIGl~~hE~P~i~~~~~~~~~~L~~G 235 (291)
T PRK12318 159 IKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVV-DQF--VGHGVGIKFHENPYVPHHRNSSKIPLAPG 235 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccC-CCc--ccCCcCccccCCCcccCcCCCCCCEeCCC
Confidence 457788889999999999999999999999999999999986432 112 222232222221 222222 24689999
Q ss_pred CEEEEEEeeEECC
Q 025641 195 DTINIDVTVYLNG 207 (250)
Q Consensus 195 DiV~IDvg~~~~G 207 (250)
+++.|+.+.+..+
T Consensus 236 MV~~iEP~i~~~~ 248 (291)
T PRK12318 236 MIFTIEPMINVGK 248 (291)
T ss_pred CEEEECCEEEcCC
Confidence 9999998887653
No 53
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=97.11 E-value=0.0038 Score=53.19 Aligned_cols=98 Identities=24% Similarity=0.346 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCC-CCCCCCCCCCCceeeecCCCccccCC-C-CCCcCCCCC
Q 025641 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVCTSVNECICHGI-P-DSRALEDGD 195 (250)
Q Consensus 119 mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga-~ps~l~y~gfp~~V~sg~N~~~~Hg~-P-~~r~Lq~GD 195 (250)
.+++.+.+.++++.+++.++||+|-.||.+.+++.+.+.|. .+.+ ..+..++.....+..|.-. + ++.+|++|.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~g~~~~~~---~~~GH~iG~~~~~~~P~i~~~~~~~~l~~gm 180 (207)
T PF00557_consen 104 QRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLEEYGLEEPYP---HGLGHGIGLEFHEPGPNIARPGDDTVLEPGM 180 (207)
T ss_dssp HHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHHHTTEGEEBT---SSSEEEESSSSSEEEEEESSTTTSSB--TTB
T ss_pred ccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHHhhcccceee---ecccccccccccccceeeecccccceecCCC
Confidence 78888888899999999999999999999999999999986 2211 1222333221111112211 2 578999999
Q ss_pred EEEEEEeeE-ECCE-EeceeeEEEcC
Q 025641 196 TINIDVTVY-LNGY-HGDTSATFFCG 219 (250)
Q Consensus 196 iV~IDvg~~-~~GY-~aD~sRT~~VG 219 (250)
++.++.+.. ..|. -.-+.-|++|.
T Consensus 181 v~~iep~~~~~~~~~g~~~ed~v~Vt 206 (207)
T PF00557_consen 181 VFAIEPGLYFIPGWGGVRFEDTVLVT 206 (207)
T ss_dssp EEEEEEEEEEETTSEEEEEBEEEEEE
T ss_pred ceeEeeeEEccCCCcEEEEEEEEEEC
Confidence 999999876 4444 55566666653
No 54
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=97.04 E-value=0.0085 Score=52.69 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCC----CC------------CCCCCCCCCceeeecCCCcc
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA----YP------------SPLGYGGFPKSVCTSVNECI 181 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga----~p------------s~l~y~gfp~~V~sg~N~~~ 181 (250)
..++..+.+.++++.+.+.++||++-.||++.+.+.+.+.+. .+ ..+..+++...+.....+ .
T Consensus 104 ~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GhgiGl~~~e-~ 182 (243)
T cd01087 104 EQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDVHD-V 182 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcCcccCchHhhhhhhhhhhhcCCCCccccCccccc-C
Confidence 456777888899999999999999999999999998876532 11 000001223333322222 2
Q ss_pred ccC--CC-CCCcCCCCCEEEEEEeeEECC-----------EEeceeeEEEcCC
Q 025641 182 CHG--IP-DSRALEDGDTINIDVTVYLNG-----------YHGDTSATFFCGD 220 (250)
Q Consensus 182 ~Hg--~P-~~r~Lq~GDiV~IDvg~~~~G-----------Y~aD~sRT~~VG~ 220 (250)
++. .+ ++.+|++|.++.+..+.+..| +-.-+.-|++|.+
T Consensus 183 p~~~~~~~~~~~l~~GMv~~iEp~iy~~~~~~~~~~~~~~~g~~ied~v~Vt~ 235 (243)
T cd01087 183 GGYLRYLRRARPLEPGMVITIEPGIYFIPDLLDVPEYFRGGGIRIEDDVLVTE 235 (243)
T ss_pred ccccccCCCCCCCCCCCEEEECCEEEeCCcccccccccceeEEEeeeEEEEcC
Confidence 222 23 367899999999999998764 5566788888854
No 55
>PRK08671 methionine aminopeptidase; Provisional
Probab=97.04 E-value=0.014 Score=53.39 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCC-----ccccC-CCCCCcC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNE-----CICHG-IPDSRAL 191 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~-----~~~Hg-~P~~r~L 191 (250)
..++..+.+.++++.+.+.++||++..||++.+++.+.+.|..+. .+..| ..+ |.+. .++.. ..++.+|
T Consensus 102 ~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~~G~~~~-~~~~G--Hgi--G~~~~he~p~ip~~~~~~~~~l 176 (291)
T PRK08671 102 KYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPI-RNLTG--HGL--ERYELHAGPSIPNYDEGGGVKL 176 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-CCCcc--cCc--CCCcccCCCccCccCCCCCcee
Confidence 456788888889999999999999999999999999999997653 22211 111 2110 11211 1236789
Q ss_pred CCCCEEEEEEeeE-ECCEEeceeeEEEcC
Q 025641 192 EDGDTINIDVTVY-LNGYHGDTSATFFCG 219 (250)
Q Consensus 192 q~GDiV~IDvg~~-~~GY~aD~sRT~~VG 219 (250)
++|+++.|+..+. -.|+..|-.+|-+..
T Consensus 177 e~GmV~aIEp~~t~G~G~v~~~~~~~iy~ 205 (291)
T PRK08671 177 EEGDVYAIEPFATDGEGKVVEGPEVEIYS 205 (291)
T ss_pred CCCCEEEEcceEECCCCeEecCCceEEEe
Confidence 9999999998765 367877777777664
No 56
>PRK12896 methionine aminopeptidase; Reviewed
Probab=97.00 E-value=0.013 Score=51.87 Aligned_cols=99 Identities=22% Similarity=0.228 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCC---ccccC-CC-CCCcCCC
Q 025641 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNE---CICHG-IP-DSRALED 193 (250)
Q Consensus 119 mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~---~~~Hg-~P-~~r~Lq~ 193 (250)
.+++.+.+.++++.+.+.++||++-.||...+.+.+.+.|.... .++.| ..+.....+ .+.+. .+ ++.+|++
T Consensus 125 ~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~G~~~~-~~~~G--HgiG~~~he~p~~~~~~~~~~~~~~le~ 201 (255)
T PRK12896 125 AEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVV-RDLTG--HGVGRSLHEEPSVILTYTDPLPNRLLRP 201 (255)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec-cCccc--CCcCcccccCCCccccCCCCCCCCEecC
Confidence 56677788888999999999999999999999999999986431 12212 222211111 11111 13 3678999
Q ss_pred CCEEEEEEeeEE------------------CCEEeceeeEEEcCC
Q 025641 194 GDTINIDVTVYL------------------NGYHGDTSATFFCGD 220 (250)
Q Consensus 194 GDiV~IDvg~~~------------------~GY~aD~sRT~~VG~ 220 (250)
|+++.|+.+.+. +++..-+..|++|.+
T Consensus 202 GmV~~iEp~i~~g~~~~~~~~~~~~~~~~~~~~~~~~edtv~vt~ 246 (255)
T PRK12896 202 GMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTR 246 (255)
T ss_pred CcEEEEeceEEcCCCceEEcCCCCEEEecCCCeEEEEEEEEEEcC
Confidence 999999987752 244555888998865
No 57
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=96.90 E-value=0.015 Score=53.19 Aligned_cols=97 Identities=22% Similarity=0.179 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCC-----ccccC-CCCCCcC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNE-----CICHG-IPDSRAL 191 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~-----~~~Hg-~P~~r~L 191 (250)
..++..+.+.++++.+.+.++||++-.||++.+++.+.+.|..+. .++.| ..+ |.+. .++.. ..++.+|
T Consensus 101 ~~~~l~ea~~~A~~~ai~~ikPG~~~~dV~~ai~~~i~~~G~~~~-~~~~G--Hgi--g~~~~h~~~~ip~~~~~~~~~l 175 (291)
T cd01088 101 KYDDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPI-RNLTG--HSI--ERYRLHAGKSIPNVKGGEGTRL 175 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCEEe-ecCCc--cCc--cCccccCCCccCccCCCCCCEe
Confidence 456778889999999999999999999999999999999998653 22212 111 2110 11111 1235789
Q ss_pred CCCCEEEEEEeeE-ECCEEeceeeEEEcC
Q 025641 192 EDGDTINIDVTVY-LNGYHGDTSATFFCG 219 (250)
Q Consensus 192 q~GDiV~IDvg~~-~~GY~aD~sRT~~VG 219 (250)
++|+++.|+..+. -.|+..|-.+|-+..
T Consensus 176 e~gmV~aIEp~~s~G~G~v~~~~~~~iy~ 204 (291)
T cd01088 176 EEGDVYAIEPFATTGKGYVHDGPECSIYM 204 (291)
T ss_pred CCCCEEEEceeEECCCCeeecCCceEEEE
Confidence 9999999999765 357776766666554
No 58
>PRK07281 methionine aminopeptidase; Reviewed
Probab=96.88 E-value=0.012 Score=53.95 Aligned_cols=85 Identities=11% Similarity=0.047 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCc--cccC-CC-CCCcCCC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNEC--ICHG-IP-DSRALED 193 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~--~~Hg-~P-~~r~Lq~ 193 (250)
..|++.+++.++++.+++.++||++-.||+..+++.+.+.|... ..++. ...|.....+. +++. .+ .+.+|++
T Consensus 149 ~~~~l~~~~~ea~~~ai~~~kpG~~~~di~~a~~~~~~~~G~~~-~~~~~--GHGIGl~~hE~P~i~~~~~~~~~~~Le~ 225 (286)
T PRK07281 149 EVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRGYGV-VRDLV--GHGVGPTMHEEPMVPNYGTAGRGLRLRE 225 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-CCCee--eeeCCCccCCCCcCCCcccCCCCCEECC
Confidence 36788999999999999999999999999999999999887543 11221 12222222221 2222 12 3568999
Q ss_pred CCEEEEEEeeEE
Q 025641 194 GDTINIDVTVYL 205 (250)
Q Consensus 194 GDiV~IDvg~~~ 205 (250)
|+++.|..+.+.
T Consensus 226 GMV~tiEPgiy~ 237 (286)
T PRK07281 226 GMVLTIEPMINT 237 (286)
T ss_pred CCEEEECCeeEc
Confidence 999999999875
No 59
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=96.80 E-value=0.016 Score=50.77 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCCCceeeecCCCccccCCCCCCcCCCCC
Q 025641 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSP-LGYGGFPKSVCTSVNECICHGIPDSRALEDGD 195 (250)
Q Consensus 117 e~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~-l~y~gfp~~V~sg~N~~~~Hg~P~~r~Lq~GD 195 (250)
...+++.+.+.++++.+.+.++||++-.||+..+.+.+.+.|..+.. +..+++...+.++.+... -..+|++|.
T Consensus 120 ~~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~~~~G~~~~~~~~~h~~g~~~~~~~~~~~-----~~~~l~~gm 194 (228)
T cd01089 120 GKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVLSHQLKRVVSSGEGKAK-----LVECVKHGL 194 (228)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCEEecCccccCcCceEecCCCCcc-----chhhccCCc
Confidence 46778888999999999999999999999999999999999942210 000122223333322110 156799999
Q ss_pred EEEEEEeeEECC-EEeceeeEEEcCC
Q 025641 196 TINIDVTVYLNG-YHGDTSATFFCGD 220 (250)
Q Consensus 196 iV~IDvg~~~~G-Y~aD~sRT~~VG~ 220 (250)
++.+.......| +-.-++-|++|.+
T Consensus 195 vf~~ep~~~~~g~~~~~~~~Tv~vt~ 220 (228)
T cd01089 195 LFPYPVLYEKEGEVVAQFKLTVLLTP 220 (228)
T ss_pred ccccceeEccCCCeEEEEEEEEEEcC
Confidence 999999998766 7788999999964
No 60
>PLN03158 methionine aminopeptidase; Provisional
Probab=96.58 E-value=0.027 Score=53.92 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCC--ccccCCCC--CCcCCCC
Q 025641 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNE--CICHGIPD--SRALEDG 194 (250)
Q Consensus 119 mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~--~~~Hg~P~--~r~Lq~G 194 (250)
.|+..+.+.++++.+++.++||++-.||...+++.+.+.|.... ..|.| ..|.....+ .++|+..+ ..+|++|
T Consensus 252 ~~~l~e~~~eal~~aI~~vkPGv~~~dI~~~i~~~~~~~G~~~v-~~~~G--HGIG~~~He~P~i~~~~~~~~~~~l~~G 328 (396)
T PLN03158 252 SRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVV-KSYCG--HGIGELFHCAPNIPHYARNKAVGVMKAG 328 (396)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCcc-CCccC--CccccccCCCCCCCcccCCCCCCEecCC
Confidence 46678888999999999999999999999999999999886431 12222 222222221 24454322 3689999
Q ss_pred CEEEEEEeeEE
Q 025641 195 DTINIDVTVYL 205 (250)
Q Consensus 195 DiV~IDvg~~~ 205 (250)
+++.|+-+.+.
T Consensus 329 MVfTIEP~i~~ 339 (396)
T PLN03158 329 QVFTIEPMINA 339 (396)
T ss_pred cEEEECCeecc
Confidence 99999988764
No 61
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=96.45 E-value=0.036 Score=52.23 Aligned_cols=114 Identities=22% Similarity=0.200 Sum_probs=76.9
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceee--ecCCCc
Q 025641 103 GIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVC--TSVNEC 180 (250)
Q Consensus 103 ~~~~~R~VKs~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~--sg~N~~ 180 (250)
++++.-.+..+.+ ..|+.-++..++.+++.+.++||++-.|++..+++.+.+.|...... ++++..+. ..+.+.
T Consensus 250 DiTRT~~~G~~~~--~~~~iy~~V~~aq~aa~~~~rpG~~~~~vd~~ar~~i~~~g~~~~~~--h~~GHgvG~~l~vhE~ 325 (384)
T COG0006 250 DITRTFPIGKPSD--EQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLYFL--HGTGHGVGFVLDVHEH 325 (384)
T ss_pred cceeEEecCCCCH--HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcCCccccc--CCccccCCCCcccCcC
Confidence 3344444443322 34577888999999999999999999999999999999976432111 22233332 112111
Q ss_pred cccCCC-CCCcCCCCCEEEEEEeeEEC-CEEeceeeEEEcCC
Q 025641 181 ICHGIP-DSRALEDGDTINIDVTVYLN-GYHGDTSATFFCGD 220 (250)
Q Consensus 181 ~~Hg~P-~~r~Lq~GDiV~IDvg~~~~-GY~aD~sRT~~VG~ 220 (250)
-..-.| ++.+|++|.++.++-|.++. ++-.-+..+++|.+
T Consensus 326 p~~~~~~~~~~L~~GMv~t~Epg~y~~g~~GirIEd~vlVte 367 (384)
T COG0006 326 PQYLSPGSDTTLEPGMVFSIEPGIYIPGGGGVRIEDTVLVTE 367 (384)
T ss_pred ccccCCCCCccccCCcEEEeccccccCCCceEEEEEEEEEcC
Confidence 101112 46789999999999998864 47888999999965
No 62
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=96.29 E-value=0.034 Score=50.98 Aligned_cols=95 Identities=23% Similarity=0.263 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCC---C--ccccCC-CCCCcCC
Q 025641 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN---E--CICHGI-PDSRALE 192 (250)
Q Consensus 119 mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N---~--~~~Hg~-P~~r~Lq 192 (250)
.++..+.+.++++.+.+.++||++-.||++.+++.+.+.|..+. .++.|+. + |.+ + .++... .++.+|+
T Consensus 106 ~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai~~vi~~~G~~~i-~~~~GHg--i--g~~~~h~g~~ip~i~~~~~~~le 180 (295)
T TIGR00501 106 YDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPI-SNLTGHS--M--APYRLHGGKSIPNVKERDTTKLE 180 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeee-cCCCCcc--e--ecccccCCCccCeecCCCCCEeC
Confidence 47778888899999999999999999999999999999998663 2322221 1 110 0 112111 2357899
Q ss_pred CCCEEEEEEeeE-ECCEEeceeeEEEc
Q 025641 193 DGDTINIDVTVY-LNGYHGDTSATFFC 218 (250)
Q Consensus 193 ~GDiV~IDvg~~-~~GY~aD~sRT~~V 218 (250)
+|+++.|+.... -.|+..|..+|-+.
T Consensus 181 ~GmV~aIEP~~~~G~G~v~~~~~~~iy 207 (295)
T TIGR00501 181 EGDVVAIEPFATDGVGYVTDGGEVSIY 207 (295)
T ss_pred CCCEEEEceeEECCcCeEecCCCeEEE
Confidence 999999998765 35787777766544
No 63
>PRK10879 proline aminopeptidase P II; Provisional
Probab=95.96 E-value=0.099 Score=50.53 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----HCCCCCC----------CCCC--CCCCceeeecCCCccc
Q 025641 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII----DNGAYPS----------PLGY--GGFPKSVCTSVNECIC 182 (250)
Q Consensus 119 mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~----~~Ga~ps----------~l~y--~gfp~~V~sg~N~~~~ 182 (250)
.|+..+++.++.+++.+.++||++-.||...+.+.+. +.|.-+. .-.| ++....+...+.+. +
T Consensus 284 q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iGldvHd~-~ 362 (438)
T PRK10879 284 QREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLGLDVHDV-G 362 (438)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhCCcCCCHHHHHHhccCccccCCCCccccCcCcCcC-C
Confidence 4667788888999999999999999999998876554 3333210 0001 12222222222221 2
Q ss_pred cCCC-CCCcCCCCCEEEEEEeeEEC----------CEEeceeeEEEcC
Q 025641 183 HGIP-DSRALEDGDTINIDVTVYLN----------GYHGDTSATFFCG 219 (250)
Q Consensus 183 Hg~P-~~r~Lq~GDiV~IDvg~~~~----------GY~aD~sRT~~VG 219 (250)
+..+ ++++|++|.++.|.-|.+.. |+-.-+.-|++|.
T Consensus 363 ~~~~~~~~~L~~GmV~tvEPgiY~~~~~~~~~~~~~~GiRiED~VlVT 410 (438)
T PRK10879 363 VYGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDIVIT 410 (438)
T ss_pred CcCCCCCCcCCCCCEEEECCEEEECCCcCcccccCccEEEeccEEEEC
Confidence 2212 35799999999999999863 4556678888885
No 64
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.091 Score=47.55 Aligned_cols=96 Identities=16% Similarity=0.087 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCC-CC-CcCCCC
Q 025641 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP-DS-RALEDG 194 (250)
Q Consensus 117 e~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P-~~-r~Lq~G 194 (250)
+..++.++.+.++|..+.+.++||.+..||-+.+++.+..+|..+. -+|.|..-.-..=..-.++|+.. .. .+|++|
T Consensus 120 ~~~~~L~~~t~eal~~~I~~vkpG~~l~~Ig~aIq~~~~~~G~~vV-r~~~GHgig~~~He~p~ip~y~~~~~~~~l~~G 198 (255)
T COG0024 120 EDAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVV-RNLTGHGIGRELHEEPSIPNYGKDGTGVRLKEG 198 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCEEe-ecccCCccCcccCCCCeeccccCCCCCcccCCC
Confidence 4566678899999999999999999999999999999999886543 23333211001111234566433 22 589999
Q ss_pred CEEEEEEeeEEC-CEEecee
Q 025641 195 DTINIDVTVYLN-GYHGDTS 213 (250)
Q Consensus 195 DiV~IDvg~~~~-GY~aD~s 213 (250)
+++.|+--+... ++..+..
T Consensus 199 mv~aIEPmi~~G~~~~~~~~ 218 (255)
T COG0024 199 MVFAIEPMINTGSGEVVEGP 218 (255)
T ss_pred CEEEEeeEEEcCCCceEecC
Confidence 999998877654 4444333
No 65
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=95.90 E-value=0.079 Score=50.62 Aligned_cols=95 Identities=22% Similarity=0.260 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCC--CCCCceeeecCCCccccCCC------CCC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGY--GGFPKSVCTSVNECICHGIP------DSR 189 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y--~gfp~~V~sg~N~~~~Hg~P------~~r 189 (250)
..++....+..+++.+++.++||++-.||...+++.+.++|..+.. ++ +++...+--|....+++..+ ++.
T Consensus 139 ~~~~l~~aa~~A~~aai~~vkPG~~~~dI~~ai~~v~~~~G~~~v~-~~~gH~igr~~~~g~~~Ii~~~~~~~~~~~~~~ 217 (389)
T TIGR00495 139 RKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPVE-GMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTA 217 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCeecC-CceeecccceeccCCCeeeecCCccccCCCCCC
Confidence 4566777888899999999999999999999999999999976531 22 12222221111122333322 245
Q ss_pred cCCCCCEEEEEEeeEE-CCEEecee
Q 025641 190 ALEDGDTINIDVTVYL-NGYHGDTS 213 (250)
Q Consensus 190 ~Lq~GDiV~IDvg~~~-~GY~aD~s 213 (250)
.+++|+++.||..+.. .|+.-+..
T Consensus 218 ~le~gev~aIEp~vs~G~g~v~~~~ 242 (389)
T TIGR00495 218 EFEENEVYAVDILVSTGEGKAKDAD 242 (389)
T ss_pred EecCCCEEEEeeeecCCCceEEECC
Confidence 7999999999998873 45544443
No 66
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=95.30 E-value=0.17 Score=49.53 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCC----CC---C-CCCCCCCceeeecCCCccccC---CC
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY----PS---P-LGYGGFPKSVCTSVNECICHG---IP 186 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~----ps---~-l~y~gfp~~V~sg~N~~~~Hg---~P 186 (250)
..+...+++.++++.+++.++||++-.||++.+++.+.+.|.. .. + .+..| .. +|.+ ..|+ +|
T Consensus 264 ~~~~L~eAv~eA~~aaI~~~kpGv~~~dI~~AIqevies~G~e~~Gk~f~~k~I~nltG--Hg--IG~y--~iHe~k~iP 337 (470)
T PTZ00053 264 KYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIESYEVEIKGKTYPIKSIRNLNG--HS--IGPY--IIHGGKSVP 337 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcccCcccccccccCCcc--cC--CCCc--cccCCCcCC
Confidence 4567788889999999999999999999999999999999853 10 0 01111 11 1211 2233 22
Q ss_pred -----CCCcCCCCCEEEEEEeeE-ECCEEeceeeEEEc
Q 025641 187 -----DSRALEDGDTINIDVTVY-LNGYHGDTSATFFC 218 (250)
Q Consensus 187 -----~~r~Lq~GDiV~IDvg~~-~~GY~aD~sRT~~V 218 (250)
+..+|++|+++.|+..+. -.||..|-.++-+.
T Consensus 338 ~v~~~~~~~LeeGmVfaIEPf~stG~G~v~~~~~~siY 375 (470)
T PTZ00053 338 IVKGGENTRMEEGELFAIETFASTGRGYVNEDLECSHY 375 (470)
T ss_pred eeCCCCCCEecCCCEEEEcceeeCCCCeEecCCCceee
Confidence 346899999999999877 47888875555444
No 67
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=94.36 E-value=0.99 Score=39.63 Aligned_cols=95 Identities=17% Similarity=0.129 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeee--cCCCc--cccCCCCCCcCCCCC
Q 025641 121 VSGRLAAQVLEYAGTLV-KPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT--SVNEC--ICHGIPDSRALEDGD 195 (250)
Q Consensus 121 ~A~~ia~~~l~~a~~~I-~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~s--g~N~~--~~Hg~P~~r~Lq~GD 195 (250)
++.+++.++...+.+.+ +||++-.+|++.+++.+.+.|.+.. +.....|.. ...+. +++...++++|++|.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~g~~~~----h~~GHgIG~~l~~hE~P~i~~~~~~~~~L~~Gm 190 (224)
T cd01085 115 RDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDYG----HGTGHGVGSFLNVHEGPQSISPAPNNVPLKAGM 190 (224)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCC----CCCCCCCCCCCcCCCCCCcCCcCCCCCCcCCCC
Confidence 34445555566666665 5899999999999999998885310 112222321 11221 110112357899999
Q ss_pred EEEEEEeeEECC-EEeceeeEEEcC
Q 025641 196 TINIDVTVYLNG-YHGDTSATFFCG 219 (250)
Q Consensus 196 iV~IDvg~~~~G-Y~aD~sRT~~VG 219 (250)
++.|.-+.+..| +..-+..|++|.
T Consensus 191 vftiEP~iy~~g~~gvried~v~Vt 215 (224)
T cd01085 191 ILSNEPGYYKEGKYGIRIENLVLVV 215 (224)
T ss_pred EEEECCEeEeCCCeEEEeeEEEEEe
Confidence 999999998654 455688888885
No 68
>PRK13607 proline dipeptidase; Provisional
Probab=93.68 E-value=0.53 Score=45.70 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH----HHCCCCCC-------CCC----C--CCCCceeeecCCCccc
Q 025641 120 RVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMI----IDNGAYPS-------PLG----Y--GGFPKSVCTSVNECIC 182 (250)
Q Consensus 120 R~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i----~~~Ga~ps-------~l~----y--~gfp~~V~sg~N~~~~ 182 (250)
++.-+++.++.+.+.+.++||++-.||+..+++.+ .+.|.... .-+ | ++....+...+.+.-.
T Consensus 271 ~~ly~~v~~aq~aai~~ikPG~~~~dv~~aa~~~i~~~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iGldvHd~~~ 350 (443)
T PRK13607 271 AALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVAG 350 (443)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhCCCceEecCCCccCccCcccccCCC
Confidence 46788889999999999999999999999887655 44444320 000 1 1222223222222210
Q ss_pred c----------------CCCCCCcCCCCCEEEEEEeeEECC
Q 025641 183 H----------------GIPDSRALEDGDTINIDVTVYLNG 207 (250)
Q Consensus 183 H----------------g~P~~r~Lq~GDiV~IDvg~~~~G 207 (250)
. ..-++++|++|+++.|.-|.++.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~l~~~~~L~~GmV~TvEPGiY~~~ 391 (443)
T PRK13607 351 FMQDDRGTHLAAPEKHPYLRCTRVLEPGMVLTIEPGLYFID 391 (443)
T ss_pred cccccccccccccccccccccCCcCCCCcEEEECCeeeeCh
Confidence 0 011357999999999999999864
No 69
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=83.93 E-value=7.5 Score=36.31 Aligned_cols=82 Identities=23% Similarity=0.309 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCC--CCCceeeecCCCccccCCCCC--CcCC
Q 025641 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYG--GFPKSVCTSVNECICHGIPDS--RALE 192 (250)
Q Consensus 117 e~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~--gfp~~V~sg~N~~~~Hg~P~~--r~Lq 192 (250)
+..|+-.+.+.++|+.+++.++||++-.||-..+++...++|..- .-.|. |....+-+.+ .++|+.-+. .+..
T Consensus 229 e~~k~LVkvT~EcL~kaI~~~kpGv~freiG~iI~kha~~~g~sV-Vr~ycGHGig~~FH~~P--nipHya~n~a~GvM~ 305 (369)
T KOG2738|consen 229 EKAKKLVKVTRECLEKAIAIVKPGVSFREIGNIIQKHATKNGYSV-VRSYCGHGIGRVFHCAP--NIPHYAKNKAPGVMK 305 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhhhcCcee-ehhhhccccccccccCC--CchhhcccCCcceee
Confidence 357888899999999999999999999999999999998887421 11122 2222232333 357765432 3567
Q ss_pred CCCEEEEEE
Q 025641 193 DGDTINIDV 201 (250)
Q Consensus 193 ~GDiV~IDv 201 (250)
+|....|+-
T Consensus 306 ~G~tFTIEP 314 (369)
T KOG2738|consen 306 PGQTFTIEP 314 (369)
T ss_pred cCceEEeee
Confidence 788877654
No 70
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=83.04 E-value=5 Score=41.61 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCC-CCC-CCCCceeeecCCCccccCCCCCCcCCCCCE
Q 025641 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSP-LGY-GGFPKSVCTSVNECICHGIPDSRALEDGDT 196 (250)
Q Consensus 119 mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~-l~y-~gfp~~V~sg~N~~~~Hg~P~~r~Lq~GDi 196 (250)
|.++-..-..+.+++...++||.+-.+|...+...+.+.+-+-.+ +.+ .||...+-+-.++.+.. .-++++|++|++
T Consensus 259 mq~nY~fLl~aqe~il~~lrpG~ki~dVY~~~l~~v~k~~Pel~~~~~k~lG~~iGlEFREssl~in-aKnd~~lk~gmv 337 (960)
T KOG1189|consen 259 MQENYEFLLAAQEEILKLLRPGTKIGDVYEKALDYVEKNKPELVPNFTKNLGFGIGLEFRESSLVIN-AKNDRVLKKGMV 337 (960)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCcchhhhhhhhcccccceeeeccccccc-ccchhhhccCcE
Confidence 567777888888899999999999999999999999988743211 000 12222222222222222 235689999999
Q ss_pred EEEEEeeE-------ECCEEeceeeEEEcCCCC
Q 025641 197 INIDVTVY-------LNGYHGDTSATFFCGDVD 222 (250)
Q Consensus 197 V~IDvg~~-------~~GY~aD~sRT~~VG~~~ 222 (250)
.+|.+|.. -+.|.-=++-|+.||+-+
T Consensus 338 Fni~lGf~nl~n~~~~~~yaL~l~DTvlv~e~~ 370 (960)
T KOG1189|consen 338 FNISLGFSNLTNPESKNSYALLLSDTVLVGEDP 370 (960)
T ss_pred EEEeeccccccCcccccchhhhccceeeecCCC
Confidence 99999874 234777788999998644
No 71
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=68.87 E-value=18 Score=37.09 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceee--ecC--CC-ccccCCCCCCcCCCC
Q 025641 120 RVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVC--TSV--NE-CICHGIPDSRALEDG 194 (250)
Q Consensus 120 R~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~--sg~--N~-~~~Hg~P~~r~Lq~G 194 (250)
.+--.......+++...++||.+-.+|...+..++...|-+-.| .|-..+. +|. ++ ..+-..-++|+||.|
T Consensus 301 ~~Ny~fl~~lQk~i~~~~rpG~~~g~iY~~~~~yi~~~~pel~p----nF~~nvG~~igiefR~s~~~~nvkn~r~lq~g 376 (1001)
T COG5406 301 QKNYEFLYMLQKYILGLVRPGTDSGIIYSEAEKYISSNGPELGP----NFIYNVGLMIGIEFRSSQKPFNVKNGRVLQAG 376 (1001)
T ss_pred hhhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHhcCCccCc----hHhhhhhhhccccccccccceeccCCceeccc
Confidence 34445566667788889999999999999999999988854221 1222222 121 11 122223456999999
Q ss_pred CEEEEEEee
Q 025641 195 DTINIDVTV 203 (250)
Q Consensus 195 DiV~IDvg~ 203 (250)
++++|.+|-
T Consensus 377 ~~fnis~gf 385 (1001)
T COG5406 377 CIFNISLGF 385 (1001)
T ss_pred cEEEEeecc
Confidence 999999854
No 72
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=63.43 E-value=27 Score=25.60 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=32.2
Q ss_pred hcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCC-ccccCCCCCCcCCCCCEEEE
Q 025641 137 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNE-CICHGIPDSRALEDGDTINI 199 (250)
Q Consensus 137 I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~-~~~Hg~P~~r~Lq~GDiV~I 199 (250)
++.|-|-.|++..+|..+.+.=.+ .+-.|... ..+.-.+-+.+|++||+|.|
T Consensus 21 L~~GaTV~D~a~~iH~di~~~f~~-----------A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI 73 (75)
T cd01666 21 LRRGSTVEDVCNKIHKDLVKQFKY-----------ALVWGSSVKHSPQRVGLDHVLEDEDVVQI 73 (75)
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCe-----------eEEeccCCcCCCeECCCCCEecCCCEEEE
Confidence 456999999999999777653211 11111111 11223456789999999976
No 73
>PRK01490 tig trigger factor; Provisional
Probab=58.56 E-value=42 Score=32.14 Aligned_cols=58 Identities=19% Similarity=0.337 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCCCCcCCCCCEEEEEEeeEECCEEece----ee
Q 025641 139 PGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDT----SA 214 (250)
Q Consensus 139 pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~~r~Lq~GDiV~IDvg~~~~GY~aD~----sR 214 (250)
.-+|+.+|+..+.+....++-+. +.+++++.||.|.+|+....+|-.-|. ..
T Consensus 130 ~~vtde~vd~~i~~l~~~~a~~~------------------------~~~~~~~~gD~V~vd~~~~~~g~~~~~~~~~~~ 185 (435)
T PRK01490 130 VEVTDEDVDEELERLRKQFATLV------------------------PVERPAENGDRVTIDFVGSIDGEEFEGGKAEDF 185 (435)
T ss_pred CCCCHHHHHHHHHHHHHhCCccc------------------------cccccCCCCCEEEEEEEEEECCEECcCCCCCce
Confidence 35789999999888777655321 223668999999999999888754332 36
Q ss_pred EEEcCC
Q 025641 215 TFFCGD 220 (250)
Q Consensus 215 T~~VG~ 220 (250)
+|.+|.
T Consensus 186 ~~~lg~ 191 (435)
T PRK01490 186 SLELGS 191 (435)
T ss_pred EEEEcC
Confidence 777774
No 74
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=50.36 E-value=66 Score=30.48 Aligned_cols=58 Identities=22% Similarity=0.437 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCC-CCCcCCCCCEEEEEEeeEECCEEecee----
Q 025641 139 PGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTS---- 213 (250)
Q Consensus 139 pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P-~~r~Lq~GDiV~IDvg~~~~GY~aD~s---- 213 (250)
.-+|+.+|+..+++...+++..- + .+++++.||.|.+|+....+|=..+.+
T Consensus 118 ~~vtde~vd~~i~~l~~~~a~~~------------------------~~~~~~~~~gD~V~v~~~~~~dg~~~~~~~~~~ 173 (408)
T TIGR00115 118 VEVTDEDVDEELEKLREQNATLV------------------------PVERRAAEKGDRVTIDFEGFIDGEAFEGGKAEN 173 (408)
T ss_pred CCCCHHHHHHHHHHHHHhCCccc------------------------cccccccCCCCEEEEEEEEEECCEECcCCCCCC
Confidence 35789999999998888766421 1 235789999999999988777554433
Q ss_pred eEEEcCC
Q 025641 214 ATFFCGD 220 (250)
Q Consensus 214 RT~~VG~ 220 (250)
.+|.+|.
T Consensus 174 ~~~~lg~ 180 (408)
T TIGR00115 174 FSLELGS 180 (408)
T ss_pred eEEEECC
Confidence 4777774
No 75
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=42.14 E-value=48 Score=24.25 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=30.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCCCCcCCCCCEEEE
Q 025641 137 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINI 199 (250)
Q Consensus 137 I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~~r~Lq~GDiV~I 199 (250)
++.|.|-.|++..+|.-+.+. |-..+-.| +.-...+..|++||+|.|
T Consensus 28 l~~g~tv~d~a~~IH~d~~~~-----------F~~A~v~~-----~~~vg~d~~l~d~DVv~i 74 (76)
T cd04938 28 VKKGTTVGDVARKIHGDLEKG-----------FIEAVGGR-----RRLEGKDVILGKNDILKF 74 (76)
T ss_pred EcCCCCHHHHHHHHhHHHHhc-----------cEEEEEcc-----CEEECCCEEecCCCEEEE
Confidence 456899999999999766542 21111112 223345778999999986
No 76
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=38.65 E-value=1.2e+02 Score=23.19 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 025641 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~ 156 (250)
++|.-.+-..- ++...+.|+|+||.+||.+.+..+-.+
T Consensus 27 KIRDNqKRV~L-LdNL~~YI~~~Ms~edi~~II~nMr~D 64 (95)
T PF04363_consen 27 KIRDNQKRVLL-LDNLSDYIKPDMSIEDIRAIIENMRSD 64 (95)
T ss_pred HHhhhHHHHHH-HHHHHHHccCCCCHHHHHHHHHHHHhH
Confidence 45555544433 778889999999999999998876543
No 77
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=38.09 E-value=73 Score=30.93 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=21.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 025641 128 QVLEYAGTLVKPGITTDEIDKAVHQMII 155 (250)
Q Consensus 128 ~~l~~a~~~I~pGvTe~EI~~~v~~~i~ 155 (250)
.+-.++++.++||+...|++...+..+.
T Consensus 310 da~navm~a~KpGv~W~Dmh~La~kvll 337 (492)
T KOG2737|consen 310 DASNAVMEAMKPGVWWVDMHKLAEKVLL 337 (492)
T ss_pred HHHHHHHHhcCCCCccccHHHHHHHHHH
Confidence 3445678889999999999888777654
No 78
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=36.65 E-value=27 Score=25.56 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCC
Q 025641 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA 159 (250)
Q Consensus 125 ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga 159 (250)
|+.++...+.+....++|+.||...+...+.+.|.
T Consensus 40 i~~~V~~~l~~~~~~~is~~eI~~~v~~~L~~~~~ 74 (90)
T PF03477_consen 40 IASEVENKLYDSGKEEISTEEIQDIVENALMEEGF 74 (90)
T ss_dssp HHHHHHTC-ST----TEEHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhccCCCeeHHHHHHHHHHHHHcCCh
Confidence 44444444444444499999999999999997763
No 79
>PRK05423 hypothetical protein; Provisional
Probab=35.48 E-value=53 Score=25.52 Aligned_cols=29 Identities=28% Similarity=0.530 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 025641 128 QVLEYAGTLVKPGITTDEIDKAVHQMIID 156 (250)
Q Consensus 128 ~~l~~a~~~I~pGvTe~EI~~~v~~~i~~ 156 (250)
..++...+.|+||||.+||...+..+-.+
T Consensus 43 lLLdNL~~YIk~~Ms~e~i~~II~nMr~D 71 (104)
T PRK05423 43 LLLDNLSDYIKPGMSIEEIQGIIANMKSD 71 (104)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhh
Confidence 35667788899999999999998876543
No 80
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=33.84 E-value=87 Score=19.08 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 025641 122 SGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII 155 (250)
Q Consensus 122 A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~ 155 (250)
.|.+...++..+...+....|+.+|...+++...
T Consensus 3 ~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~ 36 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKNNKTEEEIKKALEKACN 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHh
Confidence 3667778888899999999999999999987653
No 81
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=30.89 E-value=1.1e+02 Score=29.79 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCCCCcCCCCCEEEEEEeeEECCE
Q 025641 140 GITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGY 208 (250)
Q Consensus 140 GvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~~r~Lq~GDiV~IDvg~~~~GY 208 (250)
-+|+.||+..++........+ .|.++.++.||.|.||+.+..+|=
T Consensus 131 ev~d~dvd~~L~~l~~~~a~~------------------------~~~e~~a~~gD~v~IDf~g~iDg~ 175 (441)
T COG0544 131 EVTDEDVDEELEKLRKRFATL------------------------EPVEGAAENGDRVTIDFEGSVDGE 175 (441)
T ss_pred ccCHHHHHHHHHHHHHhcCcc------------------------cccccccccCCEEEEEEEEEEcCe
Confidence 367788888877665554321 122222899999999999988764
No 82
>PF09506 Salt_tol_Pase: Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase); InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=29.08 E-value=2.1e+02 Score=27.28 Aligned_cols=127 Identities=17% Similarity=0.270 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCC-CCC--CCCCCc-----------------
Q 025641 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPS-PLG--YGGFPK----------------- 171 (250)
Q Consensus 112 s~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps-~l~--y~gfp~----------------- 171 (250)
|+.||+-+-++-......++.....+-|..++.||...++..+.+.-+.|. .+| |..++.
T Consensus 98 s~~El~FLa~vP~~m~~~L~~~l~~~~p~l~~~~i~~~~~~sVldt~~SPTiNlN~lf~~~~~d~~~~~~LQ~~~~~lM~ 177 (381)
T PF09506_consen 98 SDAELAFLAAVPERMEALLKEFLPAILPELSQEEIEKLIEASVLDTRVSPTINLNSLFDLVPDDVERQQQLQQMMQELMN 177 (381)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCcccCHHHHHHHHHHHHhcCCCCCccchHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999998887775 122 000000
Q ss_pred -----eeeec-CCCccccCCCCC----------CcCCCCCEEEEEEeeEE-------------CCEEeceeeEEEcC---
Q 025641 172 -----SVCTS-VNECICHGIPDS----------RALEDGDTINIDVTVYL-------------NGYHGDTSATFFCG--- 219 (250)
Q Consensus 172 -----~V~sg-~N~~~~Hg~P~~----------r~Lq~GDiV~IDvg~~~-------------~GY~aD~sRT~~VG--- 219 (250)
.-+-| .|+...|..|+- ++-+.||+=.-|+--.. +-|+.+-|-++.+|
T Consensus 178 ~Ll~~A~~~GL~~SFFlH~aPNLGrd~~G~E~lk~A~~~d~GTTDiQfml~GaiKEaGlL~LlN~~i~~rtG~~PlG~~F 257 (381)
T PF09506_consen 178 ELLEKAEAQGLENSFFLHYAPNLGRDANGREILKPATAGDVGTTDIQFMLRGAIKEAGLLVLLNRYIAQRTGKAPLGEDF 257 (381)
T ss_pred HHHHHHHhCCcccceEEEeCCCCCCCCCcceeecccccCCCCchhhhhhhhhhhhhcchhHHHHHHHHhhcCCCCccCcc
Confidence 01112 356677877751 23455777666664322 44555555555555
Q ss_pred ---CCCHHHHHHHHHHHHHHHH
Q 025641 220 ---DVDDEARNLVKVVCWNFKL 238 (250)
Q Consensus 220 ---~~~~e~~~l~~~~~eA~~a 238 (250)
+.+..+..+.+.+.+.+..
T Consensus 258 NvR~AP~~h~~Ll~L~~~~i~~ 279 (381)
T PF09506_consen 258 NVRQAPKSHQELLDLCKENIPP 279 (381)
T ss_pred ccccCchhHHHHHHHHHhhCCH
Confidence 5678888888888876543
No 83
>TIGR02399 salt_tol_Pase glucosylglycerol 3-phosphatase. Proteins in this family are glucosylglycerol-phosphate phosphatase, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=28.89 E-value=2.1e+02 Score=27.40 Aligned_cols=127 Identities=17% Similarity=0.258 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCCCC-CCC--CCCCCc-----------------
Q 025641 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPS-PLG--YGGFPK----------------- 171 (250)
Q Consensus 112 s~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ps-~l~--y~gfp~----------------- 171 (250)
|+.||+-+-++-......+......+-|..+++||...++..+.+.-+.|. .+| |..++.
T Consensus 104 s~~El~FLa~vP~~m~~~L~~~l~~~~p~l~~~~i~~~~~~aVldt~~SPTiNlN~lf~~v~~d~~~~~~LQ~~~~~lM~ 183 (389)
T TIGR02399 104 SKEEVDFLAAVPDLMRPSLEQIVKKIFPNLVQEEIQTHASKSVLDTRFSPTINLNSLFDLVKDDSEIRKILQKSFEDLMN 183 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCcccCHHHHHHHHHHHHhcCCCCCccchHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999998887765 122 000000
Q ss_pred -----eeeec-CCCccccCCCC-----C----CcCCCCCEEEEEEeeEE-------------CCEEeceeeEEEcC----
Q 025641 172 -----SVCTS-VNECICHGIPD-----S----RALEDGDTINIDVTVYL-------------NGYHGDTSATFFCG---- 219 (250)
Q Consensus 172 -----~V~sg-~N~~~~Hg~P~-----~----r~Lq~GDiV~IDvg~~~-------------~GY~aD~sRT~~VG---- 219 (250)
.-+-| .|+...|..|+ . ++-.+||+=.-|+--.. +-|..+-|-++.+|
T Consensus 184 ~Ll~~A~~~GL~~SFFlH~aPNLG~d~G~E~lk~A~~~d~GTTDiQfml~GaiKEaGlL~LlN~~i~~rtG~~PlG~~FN 263 (389)
T TIGR02399 184 ELMYKAKTQGLENSFFLHIAPNLGSDNGNEIIKLASKGDIGTTDIQFMLKGAVKEAGVLFLLNKFIYDSTGIAPLGRNFN 263 (389)
T ss_pred HHHHHHHhCCcccceEEEeCCcCCCccccEeecccCCCCCCchhhHHHhcchhhhhhHHHHHHHHHHhccCCCCCCCCCc
Confidence 01112 35667787775 1 23456787777764332 33444444444444
Q ss_pred --CCCHHHHHHHHHHHHHHHH
Q 025641 220 --DVDDEARNLVKVVCWNFKL 238 (250)
Q Consensus 220 --~~~~e~~~l~~~~~eA~~a 238 (250)
+.+..+..+.+.+++.+..
T Consensus 264 vR~AP~~h~~Ll~L~~~~i~~ 284 (389)
T TIGR02399 264 FRDAPKSHQELLNLCKKHIKP 284 (389)
T ss_pred cccCCccHHHHHHHHHhcCCH
Confidence 5677888888888776543
No 84
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=26.56 E-value=1.8e+02 Score=24.38 Aligned_cols=38 Identities=8% Similarity=0.033 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHCCCC
Q 025641 123 GRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY 160 (250)
Q Consensus 123 ~~ia~~~l~~a~~~I~pGvTe~EI~~~v~~~i~~~Ga~ 160 (250)
..+++.+...+......+++..||...+++.+.+.|..
T Consensus 85 ~~i~~~V~~~l~~~~~~~IsveEIqDiVE~~L~~~~~~ 122 (154)
T PRK00464 85 EAAVSRIERQLRASGEREVPSKEIGELVMEELKKLDEV 122 (154)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCE
Confidence 34555555555554446899999999999999999854
No 85
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=25.78 E-value=2.6e+02 Score=20.15 Aligned_cols=33 Identities=36% Similarity=0.448 Sum_probs=26.7
Q ss_pred CCcCCCCCEEEEEEeeEE-CCEEecee------eEEEcCC
Q 025641 188 SRALEDGDTINIDVTVYL-NGYHGDTS------ATFFCGD 220 (250)
Q Consensus 188 ~r~Lq~GDiV~IDvg~~~-~GY~aD~s------RT~~VG~ 220 (250)
++..++||.|.+++.++. +|-.-|.+ .+|.+|.
T Consensus 2 ~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~ 41 (94)
T PF00254_consen 2 PRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGS 41 (94)
T ss_dssp SSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTS
T ss_pred CccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeecc
Confidence 356789999999999987 88777776 7788874
No 86
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=25.49 E-value=1e+02 Score=21.08 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHH---HHHh-hcCC-CCHHHHHHHHH
Q 025641 118 CMRVSGRLAAQVLEY---AGTL-VKPG-ITTDEIDKAVH 151 (250)
Q Consensus 118 ~mR~A~~ia~~~l~~---a~~~-I~pG-vTe~EI~~~v~ 151 (250)
.+.+|++|+.+++.. +.+. ++.| +|++|++..+.
T Consensus 10 GYe~aa~iAk~A~~~g~svre~v~~~g~lt~ee~d~ll~ 48 (55)
T PF10415_consen 10 GYEKAAEIAKEALAEGRSVREVVLEEGLLTEEELDELLD 48 (55)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHTTSS-HHHHHHHTS
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHcC
Confidence 577899999999875 3333 3456 79999998764
No 87
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=24.69 E-value=2e+02 Score=21.01 Aligned_cols=48 Identities=23% Similarity=0.341 Sum_probs=31.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCccccCCCCCCcCCCCCEEEE
Q 025641 137 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINI 199 (250)
Q Consensus 137 I~pGvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~~Hg~P~~r~Lq~GDiV~I 199 (250)
++.|.|-.|.+..+|..+.+. |-..+. ..| ..-.+-+.+|++||+|.|
T Consensus 27 l~~GaTv~D~A~~IHtdi~~~-----------f~~Ai~-~k~---~~~vg~~~~L~dgDvV~I 74 (76)
T cd01669 27 LPKGSTARDLAYAIHTDIGDG-----------FLHAID-ART---GRRVGEDYELKHRDVIKI 74 (76)
T ss_pred ECCCCCHHHHHHHHHHHHHhc-----------ceeeEE-eeC---CEEeCCCcEecCCCEEEE
Confidence 456999999999999777642 111111 012 233456789999999976
No 88
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=23.71 E-value=3.8e+02 Score=25.66 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=30.9
Q ss_pred hhcCcccccccchhhhhccCCCCceeeEeeecccchhhhHhhhcccC
Q 025641 18 FVGNRFIHSTQPLNQLFGYNSGKNQVSMQLSRTFSGLADLLFNRRNL 64 (250)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (250)
++|.........|+=||..-.-.+.+|+|+|-. +..++.+|.|...
T Consensus 69 ~LG~~~~~~f~~lP~L~KiL~a~~~LSIQvHPd-~~~A~~~f~~e~~ 114 (389)
T PRK15131 69 LLGEAVAKRFGELPFLFKVLCAAQPLSIQVHPN-KRAAEIGFAKENA 114 (389)
T ss_pred HcCcchhhhcCCCceEeeeeccCCCceeEeCCC-HHHHHHHhhhccc
Confidence 567655433224666777777789999999997 4466667765543
No 89
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=22.32 E-value=1.3e+02 Score=24.45 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 025641 123 GRLAAQVLEYAGTLVKPGITTDEIDKAVH 151 (250)
Q Consensus 123 ~~ia~~~l~~a~~~I~pGvTe~EI~~~v~ 151 (250)
+.+|..+-..+.+.+..|.|.+||-+.+.
T Consensus 56 a~iA~dmR~~Vr~~i~~G~Sd~eI~~~~v 84 (126)
T TIGR03147 56 SPIAYDLRHEVYSMVNEGKSNQQIIDFMT 84 (126)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 36788888999999999999999987643
No 90
>COG2944 Predicted transcriptional regulator [Transcription]
Probab=21.95 E-value=1.3e+02 Score=23.66 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=27.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 025641 111 HDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKA 149 (250)
Q Consensus 111 Ks~eEIe~mR~A~~ia~~~l~~a~~~I~pGvTe~EI~~~ 149 (250)
-++.||..||+.-.+....+.... |+|..-+..+
T Consensus 44 ls~~eIk~iRe~~~lSQ~vFA~~L-----~vs~~Tv~~W 77 (104)
T COG2944 44 LSPTEIKAIREKLGLSQPVFARYL-----GVSVSTVRKW 77 (104)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHH-----CCCHHHHHHH
Confidence 589999999999999999998776 6666666544
No 91
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=21.16 E-value=2.3e+02 Score=18.17 Aligned_cols=43 Identities=9% Similarity=-0.027 Sum_probs=33.2
Q ss_pred ccCHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCCHHHHHHHHHH
Q 025641 110 VHDEKGIECMRVSGRLAAQV-LEYAGTLVKPGITTDEIDKAVHQ 152 (250)
Q Consensus 110 VKs~eEIe~mR~A~~ia~~~-l~~a~~~I~pGvTe~EI~~~v~~ 152 (250)
--|++|-+.+.+|.+.--.- .+.+...+.+|.|..++......
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQN 46 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 34789999999998887777 77788877778998888776554
No 92
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=20.79 E-value=2.9e+02 Score=28.26 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCceeeecCCCcc-----ccC-----CCCC
Q 025641 120 RVSGRLAAQVLEYAGTLVKP-GITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI-----CHG-----IPDS 188 (250)
Q Consensus 120 R~A~~ia~~~l~~a~~~I~p-GvTe~EI~~~v~~~i~~~Ga~ps~l~y~gfp~~V~sg~N~~~-----~Hg-----~P~~ 188 (250)
|++...+-++.-+....+-| |+.-..+|...+.++-+.|.+-. ++-.. |+.... |++ .+++
T Consensus 429 k~~yT~VLkGhi~la~~vFP~~t~g~~lD~laR~~LW~~gLDy~----HgTGH----GVG~fLnVhE~P~~is~r~~~~~ 500 (606)
T KOG2413|consen 429 KEAYTLVLKGHIALARAVFPKGTKGSVLDALARSALWKAGLDYG----HGTGH----GVGSFLNVHEGPIGIGYRPYSSN 500 (606)
T ss_pred HHHHHHHHHhhhHhhhcccCCCCCcchhHHHHHHHHHhhccccC----CCCCc----ccccceEeccCCceeeeeecCCC
Confidence 44555566666666666555 67778899999999998886421 11111 111111 111 2345
Q ss_pred CcCCCCCEEEEEEeeEECC
Q 025641 189 RALEDGDTINIDVTVYLNG 207 (250)
Q Consensus 189 r~Lq~GDiV~IDvg~~~~G 207 (250)
-+|+.|.++.+.-|-+-+|
T Consensus 501 ~~l~ag~~~s~EPGYY~dg 519 (606)
T KOG2413|consen 501 FPLQAGMVFSIEPGYYKDG 519 (606)
T ss_pred chhcCceEeccCCcccccC
Confidence 6688888887766655444
Done!