RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025641
(250 letters)
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 299 bits (769), Expect = e-103
Identities = 92/160 (57%), Positives = 108/160 (67%), Gaps = 1/160 (0%)
Query: 72 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLE 131
R L PG +SP RPVP+ I RP YV S P V + IE MRV+GR+AA L
Sbjct: 4 RTALSPGVLSPTRPVPNWIARPEYVGKPAAQ-EGSEPWVQTPEVIEKMRVAGRIAAGALA 62
Query: 132 YAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRAL 191
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS +
Sbjct: 63 EAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVI 122
Query: 192 EDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKV 231
DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV
Sbjct: 123 TDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDR 162
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 292 bits (750), Expect = 5e-99
Identities = 79/166 (47%), Positives = 103/166 (62%), Gaps = 8/166 (4%)
Query: 74 RLRPGKVSPHRPVPDHIPRPPYVNSQKPIG-----IVSGPEVHDEKGIECMRVSGRLAAQ 128
+RP +S VP HI RP Y S P S V++E+ I+ +R + L +
Sbjct: 62 DVRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRIREACILGRK 121
Query: 129 VLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDS 188
L+YA TLV PG+TTDEID+ VH+ II N AYPS L Y FPKS CTSVNE +CHGIPD
Sbjct: 122 TLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVNEIVCHGIPDY 181
Query: 189 RALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDD---EARNLVKV 231
R L+ GD INID++V+ G H D + T+F GD++D E + LV+
Sbjct: 182 RPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVET 227
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 285 bits (732), Expect = 6e-97
Identities = 83/166 (50%), Positives = 107/166 (64%), Gaps = 8/166 (4%)
Query: 74 RLRPG-KVSPHRPVPDHIPRPPYVNSQKPIGI-------VSGPEVHDEKGIECMRVSGRL 125
+LRP + P RPVP +I RP Y + + S ++ + IE MR+ RL
Sbjct: 31 KLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRL 90
Query: 126 AAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGI 185
A +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVNE ICHGI
Sbjct: 91 AREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGI 150
Query: 186 PDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKV 231
PD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+
Sbjct: 151 PDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQT 196
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 231 bits (591), Expect = 2e-76
Identities = 58/129 (44%), Positives = 88/129 (68%)
Query: 103 GIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPS 162
G S ++H EK MR +G+LAA+ L++ VKP +TT+ ++ H I + A P+
Sbjct: 1 GPGSMIKIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPA 60
Query: 163 PLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVD 222
PL Y GFPKS+CTS+N +CHGIP+ + L++GD +NIDVTV L+G++GDTS ++ GDV
Sbjct: 61 PLNYKGFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVA 120
Query: 223 DEARNLVKV 231
+ + L++V
Sbjct: 121 IKPKRLIQV 129
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 213 bits (545), Expect = 2e-69
Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 2/125 (1%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYG 167
+ + IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY
Sbjct: 3 SIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYH 62
Query: 168 GFPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEAR 226
G+PKSVC S+NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G
Sbjct: 63 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGE 122
Query: 227 NLVKV 231
L ++
Sbjct: 123 RLCRI 127
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 211 bits (540), Expect = 7e-69
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
V E+ ++ ++ G + A+V KPGITT E+D ++ + GA +P+ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDE-ARNL 228
P C SVNE + HGIP R + +GD +NIDV+ NGY+ DT +F G+ DD + +
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 229 VKV 231
V
Sbjct: 123 CDV 125
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 202 bits (516), Expect = 4e-65
Identities = 43/122 (35%), Positives = 67/122 (54%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ + IE M SG L A V + T +KPGIT+ +I+ V I +G + +GY G+
Sbjct: 4 LKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEGY 63
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
+ C S+N+ ICHG P + L+DGD I +D+ V L G D+ ++ G+ E L+
Sbjct: 64 KYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLM 123
Query: 230 KV 231
+V
Sbjct: 124 EV 125
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 196 bits (500), Expect = 1e-62
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
+ IE M+ +G+ A L ++ PG T +++ V ++ P+ GYGG
Sbjct: 15 RIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGG 74
Query: 169 FPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN 227
+ + C SVNE + HG+P + ++GD +++DV G +GD + T+ G+ D+ +
Sbjct: 75 YKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKE 134
Query: 228 LVKV 231
LV+V
Sbjct: 135 LVRV 138
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 191 bits (487), Expect = 2e-60
Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
++ M +G + L K G++T E+D+ +I + GA PS LGY GFP S+C+
Sbjct: 40 LDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHGFPASICS 99
Query: 176 SVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKV 231
SVN+ + HGIP + L DGD ++ID L+G+HGD++ TF G V L +
Sbjct: 100 SVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEALSEA 156
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 133 bits (338), Expect = 4e-38
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
E + +G +A +V E A L +PG+ E+ +++ +MI++ G P FP V
Sbjct: 3 TEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKP------AFP--VNL 54
Query: 176 SVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVV 232
S+NE H P D+ L++GD + IDV V+++G+ DT+ T V E L++
Sbjct: 55 SINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTV---RVGMEEDELMEAA 111
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 135 bits (341), Expect = 1e-37
Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 12/136 (8%)
Query: 108 PEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA---YPSPL 164
+ ++ + ++ G +A +VL G++ + + MI++
Sbjct: 17 QTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKKEKE 76
Query: 165 GYGGFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG- 219
G SVN C+CH P L++GD + ID+ V+++G+ + + TF
Sbjct: 77 MKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDV 136
Query: 220 ----DVDDEARNLVKV 231
V +++K
Sbjct: 137 AQGTQVTGRKADVIKA 152
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 125 bits (314), Expect = 2e-33
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 8/124 (6%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPK 171
E+ R + QV +Y + +KPG+T EI + + FP
Sbjct: 162 SEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFP- 220
Query: 172 SVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
S+N C H P D+ L+ D ID +++G D + T + + L
Sbjct: 221 -TGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTV---TFNPKYDTL 276
Query: 229 VKVV 232
+K V
Sbjct: 277 LKAV 280
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 116 bits (293), Expect = 4e-31
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 10/125 (8%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPK 171
+ ++ R + + ++V+PGIT EI +++ G GFP
Sbjct: 43 ESDILQDARRAAEAHRRARYRVQSIVRPGITLLEIVRSIEDSTRTLLKGERNNGI-GFP- 100
Query: 172 SVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN 227
S+N C H L++ D + ID + +G D++ T +
Sbjct: 101 -AGMSMNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDSAFTV---AFKENLEP 156
Query: 228 LVKVV 232
L+
Sbjct: 157 LLVAA 161
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 81.1 bits (201), Expect = 5e-18
Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFP 170
EK I+ + + +A + + A + G E+ V ++ NGA P+ F
Sbjct: 129 SEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMKMNGAEKPA------FD 182
Query: 171 KSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
+ + + HG+ + +E GD + ID+ Y+ D + T G +++ + + +
Sbjct: 183 TIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIYE 242
Query: 231 VV 232
+V
Sbjct: 243 IV 244
Score = 30.3 bits (69), Expect = 0.64
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG 158
L AQ + A KPGIT E+D +I + G
Sbjct: 245 LEAQ--KKAVESAKPGITAKELDSIARNIIAEYG 276
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 79.9 bits (198), Expect = 1e-17
Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY-PSPLGYGGFP 170
+ I+ ++ + ++A E+ + ++PG++ E+ + + GA S F
Sbjct: 132 TDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS------FD 185
Query: 171 KSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
V + + + HG+ + +E GD + +D Y GY D + T G+ D+ + +
Sbjct: 186 IIVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIYN 245
Query: 231 VV 232
+V
Sbjct: 246 IV 247
Score = 30.2 bits (69), Expect = 0.60
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG 158
L AQ +K G+T E D I + G
Sbjct: 248 LEAQ--LRGVNGIKAGLTGREADALTRDYITEKG 279
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 80.0 bits (198), Expect = 1e-17
Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY-PSPLGYGGFP 170
DE IE ++ + ++ + ++ G+T EI + + GA + F
Sbjct: 135 DEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGVA------FD 188
Query: 171 KSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
V + + HG + +E GD I ID Y D + G+ DE + +
Sbjct: 189 TIVASGCRSALPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVHS 248
Query: 231 VV 232
+V
Sbjct: 249 IV 250
Score = 29.9 bits (68), Expect = 0.66
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG 158
L AQ E A + K G+T +D + I + G
Sbjct: 251 LEAQ--ERALKIAKAGVTGKLLDSVAREFIREKG 282
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 79.6 bits (197), Expect = 1e-17
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPK 171
D++ ++ M + R+A +V E T G+ E+ + +I + + F
Sbjct: 133 DKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIRELSDGIA------FEP 186
Query: 172 SVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKV 231
V + N H P R + GD I +D GY D + T G++D+ + +V
Sbjct: 187 IVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVKIYEV 246
Query: 232 V 232
V
Sbjct: 247 V 247
Score = 29.5 bits (67), Expect = 1.0
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 9/45 (20%)
Query: 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
AQ E A V+ GI ++D ++I GYG +
Sbjct: 248 KDAQ--ESAFKAVREGIKAKDVDSRAREVISKA-------GYGEY 283
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 78.1 bits (193), Expect = 7e-17
Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 1/123 (0%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYG-GFP 170
+ +R R+A + + E+ Q ++ A
Sbjct: 159 SAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMDTW 218
Query: 171 KSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
+ +N H +R + GD ++++ + GY+ T F D+ L +
Sbjct: 219 TWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQ 278
Query: 231 VVC 233
V
Sbjct: 279 VNV 281
Score = 32.3 bits (74), Expect = 0.12
Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG 158
+ E L+KPG +I + ++++ + +
Sbjct: 281 VEVH--EAGLKLIKPGARCSDIARELNEIFLKHD 312
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 77.7 bits (192), Expect = 9e-17
Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 7/122 (5%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPK 171
+ ++ + +G +V + PG T ++ + + I+ G F
Sbjct: 152 EAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAEGHSAV-----AFV- 205
Query: 172 SVCTSVNECICHGIPDSRALEDGDTINIDV-TVYLNGYHGDTSATFFCGDVDDEARNLVK 230
V + + H R L+ GD + +D+ Y GY+ D++ T+ GD +
Sbjct: 206 IVGSGPHGADPHHGYSDRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYS 265
Query: 231 VV 232
+
Sbjct: 266 AL 267
Score = 28.4 bits (64), Expect = 2.4
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG 158
AQ A V+PG+T ++D A ++ D G
Sbjct: 268 QRAQ--RAAVDAVRPGVTAAQVDAAARDVLADAG 299
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 77.0 bits (190), Expect = 2e-16
Identities = 17/123 (13%), Positives = 43/123 (34%), Gaps = 1/123 (0%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAV-HQMIIDNGAYPSPLGYGGFP 170
+ + +R R++ + G+ E+ A M+ + +
Sbjct: 159 SSEEZBLIRZGARISDIGGAATAAAISAGVPEYEVAIATTBAMVRZIARBFPYVELMDTW 218
Query: 171 KSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
+ +N H R +Z GD ++++ + GY+ T F +VBD + + +
Sbjct: 219 IWFQSGINTDGAHNPVTBRVVZRGDILSLNCFPMIFGYYTALERTLFLZZVBDASLZIWZ 278
Query: 231 VVC 233
Sbjct: 279 KNT 281
Score = 32.7 bits (75), Expect = 0.10
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG 158
A L+KPG +I ++ M +
Sbjct: 281 TAVH--RRGLZLIKPGARCKDIASELNBMYRZWD 312
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 57.3 bits (138), Expect = 8e-10
Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 12/121 (9%)
Query: 112 DEKGIECMRVSGRLA----AQVLEYAGTLVKPGITT-DEIDKAVHQMIIDNGAYPSPLGY 166
I MR + ++ ++A + V G+T ++I +H + G
Sbjct: 231 GPDEIRAMRCASHACEVAVRKMEDFARSKVGDGVTCENDIWAILHSENVRRGGEWI---- 286
Query: 167 GGFPKSVCTSVNECICHGIPDSRALEDGDTINIDV-TVYLNGYHGDTSATFFCGDVDDEA 225
+ + + R + + I+ D V G D S +++ GD A
Sbjct: 287 --ETRLLASGPRSNPWFQECGPRVCQRNEIISFDTDLVGAYGICTDISRSWWIGDQKPRA 344
Query: 226 R 226
Sbjct: 345 D 345
Score = 29.2 bits (65), Expect = 1.2
Identities = 7/62 (11%), Positives = 18/62 (29%), Gaps = 16/62 (25%)
Query: 124 RLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICH 183
+ + + ++KPG+ E+ + + C+ H
Sbjct: 351 QHGVEHIRTNMEMLKPGVMIPELSAN---------THVLDAKFQKQKYG-------CLMH 394
Query: 184 GI 185
G+
Sbjct: 395 GV 396
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 56.1 bits (135), Expect = 3e-09
Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 18/141 (12%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAG-----TLVKPG--ITTDEIDKAVHQMIIDNGAYP 161
+ DE+ + ++ + R++ V+ T + G IT + + +I + +
Sbjct: 176 AIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQ 235
Query: 162 S-PLGYGGFPKSVCTSVNECIC---------HGIPDSRALEDGDTINIDVTVYLNGYHGD 211
+ L G I GD + + Y +
Sbjct: 236 TKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSN 295
Query: 212 TSATFFCGDVDDEARNLVKVV 232
T+ D E + +
Sbjct: 296 VGRTYLFDP-DSEQQKNYSFL 315
Score = 36.4 bits (84), Expect = 0.006
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 29/89 (32%)
Query: 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG-FPKSVCTSVNECICH 183
+A Q + + G +I + +I F ++ +
Sbjct: 316 VALQ--KKLFEYCRDGAVIGDIYTKILGLIRAKRP-----DLEPNFVRN--------LGA 360
Query: 184 GI-------------PDSRALEDGDTINI 199
GI + R L+ G T+N+
Sbjct: 361 GIGIEFRESSLLVNAKNPRVLQAGMTLNL 389
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 51.9 bits (124), Expect = 6e-08
Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 29/150 (19%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMI-------IDNGAYP 161
EV D + VS + + + ++ + + DE K + + ID+ +
Sbjct: 176 EVKDVNEQAFLSVSSKGSDKFMDLLSNEMVRAV--DEELKITNAKLSDKIENKIDDVKFL 233
Query: 162 SPLG---------YGGFPKSVCTSVNECIC----------HGIPDSRALEDGDTINIDVT 202
L F + I + L I
Sbjct: 234 KQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNGCILASCG 293
Query: 203 VYLNGYHGDTSATFFCGDVDDEARNLVKVV 232
+ N Y + + TF D +E N +
Sbjct: 294 IRYNNYCSNITRTFL-IDPSEEMANNYDFL 322
Score = 32.7 bits (74), Expect = 0.12
Identities = 20/95 (21%), Positives = 29/95 (30%), Gaps = 29/95 (30%)
Query: 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG-FPKSVCTSVNECICH 183
L Q E ++KPG T E+ ++V + I F K+ I
Sbjct: 323 LTLQ-KEIVTNILKPGRTPKEVYESVIEYIEKTKP-----ELVPNFTKN--------IGS 368
Query: 184 GI--------------PDSRALEDGDTINIDVTVY 204
I D R ++ GD NI
Sbjct: 369 LIGLEFRDSNFILNVKNDYRKIQRGDCFNISFGFN 403
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 43.4 bits (103), Expect = 4e-05
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE ++ + + + K + E++ + +G + ++
Sbjct: 177 IEIIKEAIAVTKDGIYNVLKHAKADMMEYELEAQFDFTLKSSGI--KHHAFN----TILA 230
Query: 176 S-VNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF 216
S N + H + +++GD + +D+ + Y+ D S TF
Sbjct: 231 SGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTF 272
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 42.2 bits (100), Expect = 9e-05
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
I +R +G + A A +PG+ ++ +H +GA Y ++
Sbjct: 181 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGA--RYPSYN----TIVG 234
Query: 176 S-VNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF 216
S N CI H + + DGD + ID GY GD + TF
Sbjct: 235 SGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTF 276
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 40.5 bits (95), Expect = 3e-04
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ + CMR + ++A Q + A G + EI +A + +
Sbjct: 159 YKTQYELACMREANKIAVQGHKAARDAFFQGKSEFEIQQAYLLATQHSENDNP------Y 212
Query: 170 PKSVCTSVNECICHGI-PDSRALEDGDTINIDVTVYLNGYHGDTSATF 216
V + N I H D A + ID NGY D + T+
Sbjct: 213 GNIVALNENCAILHYTHFDRVAPATHRSFLIDAGANFNGYAADITRTY 260
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 39.0 bits (91), Expect = 0.001
Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 8/111 (7%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ +E +R + +++++ VK G+ E++ G +
Sbjct: 187 FKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHS----SY 242
Query: 170 PKSVCTSVNECICH----GIPDSRALEDGDTINIDVTVYLNGYHGDTSATF 216
+ N + H G P+ R +++GD D+ + D + +F
Sbjct: 243 TCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSF 293
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 37.3 bits (87), Expect = 0.003
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ ++CMR + +LA + A + G + +I+ A +
Sbjct: 159 YKTDYELDCMREANKLAVAGHKAAEQAFREGKSEFDINLAYAAASRQGDNDVP------Y 212
Query: 170 PKSVCTSVNECICH-GIPDSRALEDGDTINIDVTVYLNGYHGDTSATF 216
V + + I H D+ A ++ + ID +GY D + T+
Sbjct: 213 TSIVALNEHASILHYMQCDTVAPKESRSFLIDAGANYHGYAADITRTY 260
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.010
Identities = 34/221 (15%), Positives = 66/221 (29%), Gaps = 71/221 (32%)
Query: 14 LLSSFVGNRF------IHSTQPLN-QLFG---------YNSGKNQVSMQLSRTFSGLADL 57
LL ++ R + +T P + +++ K+ +L+ ++
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 58 LFNRRNLDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGI 116
L EP RK V P P + + ++ D +
Sbjct: 366 L--------EPAEYRKMFDRLSV-----FPPSAHIPTIL-----LSLIWFDVIKSDVMVV 407
Query: 117 --ECMRVSGRLAA-QVLEYAGTLVKPGITTD-----EIDKAVHQMIIDNGAYPSPLGYGG 168
+ + S L Q E ++ P I + E + A+H+ I+D Y P +
Sbjct: 408 VNKLHKYS--LVEKQPKESTISI--PSIYLELKVKLENEYALHRSIVD--HYNIPKTF-- 459
Query: 169 FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYH 209
IP D + ++ G+H
Sbjct: 460 -----------DSDDLIPPY---LDQYFYS-----HI-GHH 480
Score = 35.6 bits (81), Expect = 0.014
Identities = 40/274 (14%), Positives = 70/274 (25%), Gaps = 92/274 (33%)
Query: 13 RLLSSFVGNRFIHSTQPLNQ---LFGY--NSGKNQVSM----QLSRTFSGLADLLFNRRN 63
+LS + I S ++ LF + + V L + L
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQ 102
Query: 64 LDAEPNRR-----RKRLRPGKVSPHRPVPDHIPRPPYVN-------SQKPIGIVSGPEVH 111
R R RL ++ R +P V +
Sbjct: 103 RQPSMMTRMYIEQRDRLYND---NQVFAKYNVSRLQPYLKLRQALLELRPAKNVL---ID 156
Query: 112 DEKGIECMRVSGR--LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
G + SG+ +A V V +D + L
Sbjct: 157 ---G---VLGSGKTWVALDVCL---------------SYKVQCK-MDFKIFWLNLKNCNS 194
Query: 170 PKSVCTSVNECICHGI-PDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
P++V + + + + I P+ + D + NI + + E R L
Sbjct: 195 PETVLEMLQK-LLYQIDPNWTSRSDHSS-NIKLR---------------IHSIQAELRRL 237
Query: 229 VK-------------VVCWN------FKLH-RVL 242
+K V N F L ++L
Sbjct: 238 LKSKPYENCLLVLLNV--QNAKAWNAFNLSCKIL 269
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.53
Identities = 31/191 (16%), Positives = 54/191 (28%), Gaps = 86/191 (45%)
Query: 11 QPRLL-------------------SSFVGNRFIHSTQPLNQLFG-YN-----SGKNQVSM 45
QP L ++F G HS L G Y + M
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAG----HS------L-GEYAALASLAD----VM 1777
Query: 46 QLSRTFSGLADLLFNRRNL--DAEPNRRRKR-------LRPGKVSPH------RPVPDHI 90
+ L +++F R A P R + PG+V+ + V + +
Sbjct: 1778 ----SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 91 PRPP-----YVN-----SQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPG 140
+ VN Q + +G D + ++ VL +
Sbjct: 1834 GKRTGWLVEIVNYNVENQQ--Y-VAAG----DLRALDT-------VTNVLNFIKL---QK 1876
Query: 141 ITTDEIDKAVH 151
I E+ K++
Sbjct: 1877 IDIIELQKSLS 1887
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na
open conformation, chloride ION binding site; HET: NAG;
2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A
3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A
3scl_A
Length = 615
Score = 27.9 bits (61), Expect = 3.8
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 35 GYNSGKNQVSMQLSRTFSGLADLLFNRRNLDAEPNRRRKRLRPGKVSPHRPVPDHIPRPP 94
GY+ + Q+ + TF + L +L A + P +SP +P H+
Sbjct: 214 GYDYSRGQLIEDVEHTFEEIKPLY---EHLHAYVRAKLMNAYPSYISPIGCLPAHLLGDM 270
Query: 95 YVNSQKPIGIVSGPE 109
+ + ++ P
Sbjct: 271 WGRFWTNLYSLTVPF 285
>2af7_A Gamma-carboxymuconolactone decarboxylase; O26336_metth, NESG,
TT747, structural genomics, PSI, protein structure
initiative; 2.81A
{Methanothermobacterthermautotrophicus} SCOP: a.152.1.2
Length = 125
Score = 26.6 bits (59), Expect = 4.5
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 10/34 (29%)
Query: 140 GITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSV 173
G + DEI + + QM + Y GFP ++
Sbjct: 84 GCSKDEIIEVMIQMAV----------YAGFPAAI 107
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 27.2 bits (60), Expect = 5.1
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 139 PGITTDEIDKAVHQMIIDNGAYPSPL---GYGGF 169
IT I +A + GA + G GGF
Sbjct: 270 GAITNPMIQEAF-DVATGAGAMAGKVSGAGGGGF 302
>1ugj_A Riken cDNA 2310057J16 protein; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.41.1.3
Length = 141
Score = 26.4 bits (58), Expect = 5.5
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 19 VGNRFIHSTQPLNQLFGYNSGKNQVSMQLSRTFSGLAD 56
G R + + ++ YNS + + + ++T S D
Sbjct: 86 YGPRTVTPAM-VEGIYKYNSDRKRFTQIPAKTMSMSVD 122
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 27.2 bits (60), Expect = 6.7
Identities = 5/17 (29%), Positives = 5/17 (29%)
Query: 206 NGYHGDTSATFFCGDVD 222
YHGDT
Sbjct: 491 GSYHGDTLGAMEAQAPS 507
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 26.8 bits (60), Expect = 8.8
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 206 NGYHGDTSATFFCGDVD 222
NGYHGDT G ++
Sbjct: 144 NGYHGDTIGAVSVGSIE 160
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold,
RRM domain, RNA recogntion, aminoacyl-tRNA synthetase,
ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB:
3hfv_A* 3teg_A* 3tup_A
Length = 415
Score = 26.8 bits (59), Expect = 9.2
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 150 VHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGD 195
+ Q ++++ +G+ + I + IPD R D
Sbjct: 258 MEQQLVNSAGAQDRIGWAF---GLGLERLAMILYDIPDIRLFWCED 300
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.439
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,944,893
Number of extensions: 240922
Number of successful extensions: 696
Number of sequences better than 10.0: 1
Number of HSP's gapped: 662
Number of HSP's successfully gapped: 56
Length of query: 250
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,160,982
Effective search space: 661596138
Effective search space used: 661596138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)