Query 025642
Match_columns 250
No_of_seqs 350 out of 3206
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1533 Predicted GTPase [Gene 100.0 2.6E-64 5.6E-69 427.5 17.7 245 1-247 1-251 (290)
2 KOG1534 Putative transcription 100.0 1.2E-63 2.5E-68 417.7 17.3 246 1-249 2-251 (273)
3 PF03029 ATP_bind_1: Conserved 100.0 1.2E-52 2.6E-57 365.8 11.9 234 7-249 1-237 (238)
4 KOG1532 GTPase XAB1, interacts 100.0 9.8E-35 2.1E-39 252.1 14.9 241 2-247 19-262 (366)
5 PRK13768 GTPase; Provisional 100.0 1.7E-30 3.7E-35 228.5 22.2 244 1-249 1-247 (253)
6 COG1126 GlnQ ABC-type polar am 100.0 6.9E-28 1.5E-32 203.9 11.5 151 4-162 30-214 (240)
7 COG1120 FepC ABC-type cobalami 99.9 7.6E-28 1.6E-32 210.6 10.4 167 4-177 30-232 (258)
8 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 2.5E-27 5.4E-32 206.6 12.7 155 4-167 32-222 (254)
9 COG1131 CcmA ABC-type multidru 99.9 9.4E-26 2E-30 202.4 12.1 152 4-163 33-216 (293)
10 COG4555 NatA ABC-type Na+ tran 99.9 6.4E-26 1.4E-30 190.1 9.4 146 4-162 30-211 (245)
11 PRK13537 nodulation ABC transp 99.9 2E-24 4.3E-29 194.8 12.3 153 4-163 35-217 (306)
12 COG1135 AbcC ABC-type metal io 99.9 2.1E-24 4.6E-29 191.0 11.5 162 4-173 34-231 (339)
13 COG1125 OpuBA ABC-type proline 99.9 2.6E-24 5.6E-29 186.1 11.5 150 4-160 29-212 (309)
14 COG1136 SalX ABC-type antimicr 99.9 1E-23 2.2E-28 181.4 15.1 131 4-137 33-200 (226)
15 COG1116 TauB ABC-type nitrate/ 99.9 4.3E-24 9.2E-29 184.6 12.6 143 4-153 31-200 (248)
16 TIGR01188 drrA daunorubicin re 99.9 2.8E-24 6.1E-29 193.4 11.0 151 4-162 21-202 (302)
17 PRK13536 nodulation factor exp 99.9 7.7E-24 1.7E-28 193.6 12.6 153 4-163 69-251 (340)
18 COG1124 DppF ABC-type dipeptid 99.9 7.4E-24 1.6E-28 182.2 11.0 152 4-162 35-220 (252)
19 TIGR00960 3a0501s02 Type II (G 99.9 8.8E-24 1.9E-28 180.8 11.5 143 4-154 31-208 (216)
20 COG1127 Ttg2A ABC-type transpo 99.9 9.5E-24 2.1E-28 181.2 11.3 152 4-162 36-224 (263)
21 COG4152 ABC-type uncharacteriz 99.9 1.3E-23 2.9E-28 180.6 11.5 159 4-170 30-216 (300)
22 TIGR02314 ABC_MetN D-methionin 99.9 1.3E-23 2.8E-28 192.3 11.6 157 4-168 33-225 (343)
23 cd03226 ABC_cobalt_CbiO_domain 99.9 2E-23 4.3E-28 177.4 11.7 143 4-154 28-196 (205)
24 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.2E-23 4.8E-28 178.4 12.0 142 4-154 32-210 (218)
25 cd03259 ABC_Carb_Solutes_like 99.9 4.5E-23 9.8E-28 176.1 13.3 144 4-155 28-202 (213)
26 cd03261 ABC_Org_Solvent_Resist 99.9 1.7E-23 3.8E-28 181.3 10.9 146 4-157 28-210 (235)
27 COG3638 ABC-type phosphate/pho 99.9 2.1E-23 4.6E-28 178.6 11.1 160 4-170 32-234 (258)
28 COG3840 ThiQ ABC-type thiamine 99.9 1.8E-23 3.8E-28 173.0 10.0 147 4-163 27-209 (231)
29 COG1122 CbiO ABC-type cobalt t 99.9 1.1E-23 2.3E-28 183.3 8.8 146 4-162 32-217 (235)
30 TIGR02673 FtsE cell division A 99.9 6.3E-23 1.4E-27 175.1 13.0 143 4-154 30-207 (214)
31 cd03266 ABC_NatA_sodium_export 99.9 4.7E-23 1E-27 176.4 12.1 143 4-155 33-207 (218)
32 cd03269 ABC_putative_ATPase Th 99.9 5.8E-23 1.3E-27 175.0 12.5 144 4-155 28-199 (210)
33 cd03225 ABC_cobalt_CbiO_domain 99.9 4.5E-23 9.7E-28 175.7 11.7 143 4-154 29-204 (211)
34 PRK09536 btuD corrinoid ABC tr 99.9 3.9E-23 8.5E-28 192.5 12.2 158 4-168 31-223 (402)
35 cd03218 ABC_YhbG The ABC trans 99.9 4.4E-23 9.4E-28 178.2 11.7 147 4-158 28-207 (232)
36 TIGR01288 nodI ATP-binding ABC 99.9 3.1E-23 6.6E-28 186.7 11.1 152 4-162 32-213 (303)
37 cd03265 ABC_DrrA DrrA is the A 99.9 5.5E-23 1.2E-27 176.5 12.1 145 4-156 28-204 (220)
38 cd03293 ABC_NrtD_SsuB_transpor 99.9 9E-23 2E-27 175.1 13.3 144 4-155 32-203 (220)
39 cd03219 ABC_Mj1267_LivG_branch 99.9 5.1E-23 1.1E-27 178.2 11.7 146 4-157 28-216 (236)
40 COG4559 ABC-type hemin transpo 99.9 7E-23 1.5E-27 173.1 12.1 159 4-167 29-224 (259)
41 cd03292 ABC_FtsE_transporter F 99.9 7.7E-23 1.7E-27 174.5 12.5 142 4-153 29-205 (214)
42 PRK11650 ugpC glycerol-3-phosp 99.9 3.7E-23 8E-28 190.2 11.1 150 4-161 32-212 (356)
43 cd03268 ABC_BcrA_bacitracin_re 99.9 8.4E-23 1.8E-27 173.8 12.0 144 4-155 28-197 (208)
44 TIGR03522 GldA_ABC_ATP gliding 99.9 7.4E-23 1.6E-27 184.1 12.1 152 4-163 30-211 (301)
45 COG0411 LivG ABC-type branched 99.9 2.8E-23 6E-28 178.7 8.8 154 4-165 32-231 (250)
46 cd03262 ABC_HisP_GlnQ_permease 99.9 9.7E-23 2.1E-27 173.7 12.1 143 4-154 28-205 (213)
47 COG3842 PotA ABC-type spermidi 99.9 6.1E-23 1.3E-27 186.9 11.5 141 4-152 33-205 (352)
48 TIGR01166 cbiO cobalt transpor 99.9 2.1E-22 4.5E-27 169.2 13.8 130 4-137 20-184 (190)
49 COG2884 FtsE Predicted ATPase 99.9 1.6E-22 3.4E-27 168.3 12.8 131 4-137 30-194 (223)
50 TIGR01184 ntrCD nitrate transp 99.9 1.3E-22 2.8E-27 175.7 12.8 151 4-162 13-193 (230)
51 cd03258 ABC_MetN_methionine_tr 99.9 4.9E-23 1.1E-27 178.1 9.9 146 4-157 33-214 (233)
52 PRK13651 cobalt transporter AT 99.9 5.8E-23 1.3E-27 185.3 10.7 152 4-163 35-244 (305)
53 COG3839 MalK ABC-type sugar tr 99.9 5E-23 1.1E-27 186.6 10.2 131 4-137 31-191 (338)
54 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.5E-22 3.2E-27 174.8 12.7 143 4-154 50-212 (224)
55 PRK11153 metN DL-methionine tr 99.9 5.5E-23 1.2E-27 188.2 10.4 151 4-162 33-219 (343)
56 PRK13643 cbiO cobalt transport 99.9 5.5E-23 1.2E-27 183.9 10.1 153 4-164 34-224 (288)
57 cd03301 ABC_MalK_N The N-termi 99.9 1.9E-22 4.2E-27 172.1 13.0 143 4-153 28-200 (213)
58 PRK13647 cbiO cobalt transport 99.9 7.9E-23 1.7E-27 181.6 10.9 151 4-162 33-216 (274)
59 cd03296 ABC_CysA_sulfate_impor 99.9 9E-23 2E-27 177.3 11.0 144 4-155 30-208 (239)
60 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.5E-22 3.1E-27 172.7 11.8 145 4-156 26-201 (211)
61 PRK13637 cbiO cobalt transport 99.9 8.6E-23 1.9E-27 182.5 10.6 151 4-162 35-223 (287)
62 cd03231 ABC_CcmA_heme_exporter 99.9 4.4E-22 9.5E-27 168.9 14.4 143 4-154 28-195 (201)
63 PRK13641 cbiO cobalt transport 99.9 7.3E-23 1.6E-27 183.0 10.1 152 4-162 35-223 (287)
64 PRK11248 tauB taurine transpor 99.9 3.6E-22 7.9E-27 175.6 14.0 146 4-157 29-202 (255)
65 cd03294 ABC_Pro_Gly_Bertaine T 99.9 8.1E-23 1.8E-27 181.0 9.9 146 4-157 52-234 (269)
66 TIGR03265 PhnT2 putative 2-ami 99.9 1.2E-22 2.6E-27 186.7 11.3 150 4-161 32-212 (353)
67 PRK09493 glnQ glutamine ABC tr 99.9 1.3E-22 2.9E-27 176.2 11.0 147 4-157 29-209 (240)
68 COG4604 CeuD ABC-type enteroch 99.9 8.7E-23 1.9E-27 170.8 9.2 159 4-171 29-223 (252)
69 TIGR01186 proV glycine betaine 99.9 1.1E-22 2.3E-27 187.4 10.6 151 4-162 21-208 (363)
70 cd03263 ABC_subfamily_A The AB 99.9 2E-22 4.2E-27 172.8 11.6 144 4-156 30-204 (220)
71 PRK11629 lolD lipoprotein tran 99.9 5.5E-22 1.2E-26 171.8 14.5 136 4-147 37-209 (233)
72 cd03256 ABC_PhnC_transporter A 99.9 2.3E-22 5E-27 174.5 12.1 145 4-156 29-217 (241)
73 cd03297 ABC_ModC_molybdenum_tr 99.9 2.4E-22 5.2E-27 171.8 11.9 144 4-155 25-203 (214)
74 cd03235 ABC_Metallic_Cations A 99.9 2.5E-22 5.5E-27 171.4 12.0 144 4-155 27-203 (213)
75 PRK10908 cell division protein 99.9 4.8E-22 1E-26 170.9 13.7 143 4-154 30-207 (222)
76 PRK13646 cbiO cobalt transport 99.9 8.2E-23 1.8E-27 182.5 9.3 151 4-162 35-224 (286)
77 PRK11000 maltose/maltodextrin 99.9 2.4E-22 5.2E-27 185.7 12.6 149 4-160 31-210 (369)
78 cd03224 ABC_TM1139_LivF_branch 99.9 2.7E-22 5.9E-27 172.0 12.1 146 4-157 28-205 (222)
79 TIGR02315 ABC_phnC phosphonate 99.9 1.4E-22 3.1E-27 176.1 10.4 145 4-156 30-218 (243)
80 PRK13638 cbiO cobalt transport 99.9 1.1E-22 2.5E-27 180.1 9.8 148 4-159 29-211 (271)
81 PRK11300 livG leucine/isoleuci 99.9 2E-22 4.3E-27 176.6 11.2 145 4-156 33-226 (255)
82 PRK13634 cbiO cobalt transport 99.9 1.1E-22 2.5E-27 182.0 9.8 152 4-163 35-225 (290)
83 PRK10851 sulfate/thiosulfate t 99.9 1.9E-22 4.1E-27 185.3 11.4 150 4-161 30-214 (353)
84 TIGR03258 PhnT 2-aminoethylpho 99.9 1.8E-22 4E-27 185.9 11.2 149 4-160 33-215 (362)
85 TIGR02211 LolD_lipo_ex lipopro 99.9 6E-22 1.3E-26 169.9 13.6 130 4-137 33-199 (221)
86 cd03264 ABC_drug_resistance_li 99.9 4.6E-22 9.9E-27 169.6 12.6 143 4-155 27-200 (211)
87 PRK11247 ssuB aliphatic sulfon 99.9 2.9E-22 6.3E-27 176.6 11.6 150 4-161 40-211 (257)
88 PRK13649 cbiO cobalt transport 99.9 1.8E-22 3.9E-27 179.6 10.3 149 4-160 35-221 (280)
89 TIGR03608 L_ocin_972_ABC putat 99.9 4.7E-22 1E-26 168.7 12.3 130 4-137 26-191 (206)
90 PRK13538 cytochrome c biogenes 99.9 9.9E-22 2.1E-26 167.0 14.3 130 4-137 29-186 (204)
91 PRK13631 cbiO cobalt transport 99.9 1.7E-22 3.6E-27 183.4 10.1 163 4-174 54-266 (320)
92 COG1117 PstB ABC-type phosphat 99.9 5.1E-22 1.1E-26 168.0 12.2 135 3-154 34-218 (253)
93 PRK13543 cytochrome c biogenes 99.9 1.3E-21 2.8E-26 167.6 14.9 143 4-154 39-207 (214)
94 PRK11264 putative amino-acid A 99.9 5.7E-22 1.2E-26 173.2 12.8 145 4-156 31-216 (250)
95 TIGR03740 galliderm_ABC gallid 99.9 4.9E-22 1.1E-26 170.9 12.2 146 4-157 28-197 (223)
96 cd03295 ABC_OpuCA_Osmoprotecti 99.9 4.2E-22 9E-27 173.5 11.9 144 4-155 29-207 (242)
97 TIGR03771 anch_rpt_ABC anchore 99.9 3.9E-22 8.4E-27 171.9 11.6 144 4-155 8-184 (223)
98 PRK11831 putative ABC transpor 99.9 2.5E-22 5.4E-27 177.9 10.6 146 4-157 35-217 (269)
99 PRK11432 fbpC ferric transport 99.9 4.1E-22 8.8E-27 183.0 12.4 149 4-160 34-213 (351)
100 PRK13650 cbiO cobalt transport 99.9 1.9E-22 4.1E-27 179.6 9.8 148 4-160 35-216 (279)
101 PRK10895 lipopolysaccharide AB 99.9 4.8E-22 1E-26 172.9 12.0 147 4-158 31-211 (241)
102 PRK09452 potA putrescine/sperm 99.9 3.2E-22 7E-27 185.0 11.3 150 4-161 42-222 (375)
103 PRK13639 cbiO cobalt transport 99.9 2.9E-22 6.3E-27 178.0 10.6 149 4-160 30-213 (275)
104 PRK11144 modC molybdate transp 99.9 3.3E-22 7.1E-27 183.7 11.1 149 4-160 26-205 (352)
105 PRK13636 cbiO cobalt transport 99.9 2E-22 4.4E-27 179.8 9.4 152 4-162 34-220 (283)
106 PRK13652 cbiO cobalt transport 99.9 3.7E-22 8E-27 177.5 11.0 152 4-162 32-216 (277)
107 COG1137 YhbG ABC-type (unclass 99.9 2.4E-23 5.2E-28 174.5 3.1 150 4-160 32-215 (243)
108 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 7.9E-22 1.7E-26 171.1 12.8 136 4-147 29-196 (236)
109 TIGR02142 modC_ABC molybdenum 99.9 3.7E-22 7.9E-27 183.5 11.2 150 4-161 25-209 (354)
110 TIGR01277 thiQ thiamine ABC tr 99.9 5.7E-22 1.2E-26 169.5 11.6 144 4-155 26-200 (213)
111 TIGR03411 urea_trans_UrtD urea 99.9 8.5E-22 1.8E-26 171.3 12.8 145 4-157 30-215 (242)
112 PRK11124 artP arginine transpo 99.9 6.1E-22 1.3E-26 172.3 11.9 144 4-155 30-212 (242)
113 cd03237 ABC_RNaseL_inhibitor_d 99.9 9.2E-22 2E-26 172.4 12.9 145 4-156 27-188 (246)
114 PRK10070 glycine betaine trans 99.9 3.4E-22 7.4E-27 186.1 10.7 150 4-161 56-242 (400)
115 PRK10771 thiQ thiamine transpo 99.9 4.1E-22 8.9E-27 172.5 10.2 145 4-156 27-202 (232)
116 cd03257 ABC_NikE_OppD_transpor 99.9 8.2E-22 1.8E-26 169.6 11.8 144 4-155 33-217 (228)
117 TIGR01189 ccmA heme ABC export 99.9 2.7E-21 5.9E-26 163.5 14.8 130 4-137 28-184 (198)
118 PRK15112 antimicrobial peptide 99.9 3.4E-22 7.5E-27 176.8 9.7 148 4-158 41-224 (267)
119 PRK10584 putative ABC transpor 99.9 6E-22 1.3E-26 170.8 10.8 130 4-137 38-204 (228)
120 PRK13548 hmuV hemin importer A 99.9 7E-22 1.5E-26 174.0 11.4 146 4-157 30-214 (258)
121 PRK10619 histidine/lysine/argi 99.9 5.1E-22 1.1E-26 174.5 10.5 146 4-156 33-224 (257)
122 TIGR02769 nickel_nikE nickel i 99.9 6E-22 1.3E-26 174.9 11.0 145 4-156 39-223 (265)
123 TIGR03410 urea_trans_UrtE urea 99.9 7.3E-22 1.6E-26 170.5 11.2 144 4-155 28-203 (230)
124 PRK13540 cytochrome c biogenes 99.9 4.7E-21 1E-25 162.4 15.9 130 4-137 29-184 (200)
125 PRK14250 phosphate ABC transpo 99.9 3.9E-22 8.5E-27 173.7 9.4 146 4-157 31-205 (241)
126 cd03267 ABC_NatA_like Similar 99.9 1.3E-21 2.7E-26 170.1 12.4 144 4-155 49-225 (236)
127 cd03260 ABC_PstB_phosphate_tra 99.9 5.6E-22 1.2E-26 170.9 10.0 146 4-157 28-213 (227)
128 TIGR03415 ABC_choXWV_ATP choli 99.9 9.1E-22 2E-26 182.2 12.0 152 4-163 52-244 (382)
129 PRK13541 cytochrome c biogenes 99.9 5.3E-21 1.2E-25 161.5 15.6 130 4-137 28-180 (195)
130 PRK13539 cytochrome c biogenes 99.9 4.7E-21 1E-25 163.3 15.2 130 4-137 30-184 (207)
131 PRK13635 cbiO cobalt transport 99.9 4.8E-22 1E-26 177.1 9.4 146 4-157 35-213 (279)
132 COG1118 CysA ABC-type sulfate/ 99.9 8.2E-22 1.8E-26 174.4 10.6 162 4-179 30-227 (345)
133 cd03214 ABC_Iron-Siderophores_ 99.9 5.3E-22 1.2E-26 165.7 9.0 140 4-155 27-169 (180)
134 COG3845 ABC-type uncharacteriz 99.9 2E-21 4.4E-26 180.8 13.7 149 4-160 32-216 (501)
135 cd03215 ABC_Carb_Monos_II This 99.9 1.4E-21 3E-26 163.4 11.4 135 4-155 28-175 (182)
136 PRK13645 cbiO cobalt transport 99.9 5.9E-22 1.3E-26 177.2 9.7 150 4-161 39-228 (289)
137 PRK11614 livF leucine/isoleuci 99.9 9.4E-22 2E-26 170.6 10.7 145 4-157 33-210 (237)
138 TIGR02770 nickel_nikD nickel i 99.9 9.2E-22 2E-26 170.2 10.3 146 4-157 14-199 (230)
139 cd03230 ABC_DR_subfamily_A Thi 99.9 1E-21 2.2E-26 162.9 10.1 129 4-153 28-164 (173)
140 PRK11607 potG putrescine trans 99.9 2E-21 4.3E-26 180.0 13.0 149 4-160 47-226 (377)
141 COG4586 ABC-type uncharacteriz 99.9 8.3E-22 1.8E-26 171.9 9.8 158 4-168 52-241 (325)
142 PRK10762 D-ribose transporter 99.9 1.4E-21 3E-26 187.0 12.2 149 4-160 32-217 (501)
143 TIGR03005 ectoine_ehuA ectoine 99.9 9.7E-22 2.1E-26 172.2 10.1 144 4-155 28-218 (252)
144 TIGR01187 potA spermidine/putr 99.9 8.4E-22 1.8E-26 179.2 9.9 147 7-161 1-178 (325)
145 cd03229 ABC_Class3 This class 99.9 9.9E-22 2.1E-26 163.8 9.5 131 4-153 28-170 (178)
146 PRK11231 fecE iron-dicitrate t 99.9 1.4E-21 3.1E-26 171.4 10.8 149 4-160 30-214 (255)
147 PRK15439 autoinducer 2 ABC tra 99.9 2E-21 4.4E-26 186.3 12.6 147 4-158 39-214 (510)
148 PRK10575 iron-hydroxamate tran 99.9 1.7E-21 3.7E-26 172.0 11.1 149 4-160 39-224 (265)
149 PRK15079 oligopeptide ABC tran 99.9 1.3E-21 2.8E-26 178.3 10.6 151 4-161 49-239 (331)
150 TIGR00972 3a0107s01c2 phosphat 99.9 1.7E-21 3.8E-26 170.1 10.8 145 4-157 29-216 (247)
151 PRK11308 dppF dipeptide transp 99.9 1E-21 2.2E-26 178.8 9.6 152 4-162 43-233 (327)
152 PRK13644 cbiO cobalt transport 99.9 1.3E-21 2.9E-26 173.7 10.1 135 4-146 30-198 (274)
153 PRK10253 iron-enterobactin tra 99.9 2.2E-21 4.8E-26 171.3 11.3 148 4-159 35-219 (265)
154 PRK13546 teichoic acids export 99.9 1.9E-21 4E-26 172.1 10.7 146 4-157 52-216 (264)
155 PRK10938 putative molybdenum t 99.9 1.9E-21 4.1E-26 185.5 11.4 144 4-155 31-206 (490)
156 PRK15056 manganese/iron transp 99.9 1.5E-21 3.3E-26 173.0 10.0 144 4-155 35-213 (272)
157 PRK09700 D-allose transporter 99.9 2.5E-21 5.4E-26 185.6 12.2 146 4-157 33-218 (510)
158 PRK09700 D-allose transporter 99.9 2.3E-21 4.9E-26 185.8 11.9 148 4-159 291-484 (510)
159 COG1129 MglA ABC-type sugar tr 99.9 2.6E-21 5.6E-26 182.4 11.8 157 4-168 36-229 (500)
160 cd03300 ABC_PotA_N PotA is an 99.9 4.4E-21 9.5E-26 166.1 12.3 146 4-156 28-203 (232)
161 PRK13633 cobalt transporter AT 99.9 1.4E-21 3E-26 174.0 9.5 148 4-160 38-220 (280)
162 COG4598 HisP ABC-type histidin 99.9 2.2E-21 4.8E-26 160.5 9.9 149 4-160 34-228 (256)
163 TIGR01978 sufC FeS assembly AT 99.9 4E-21 8.7E-26 166.9 12.1 140 4-150 28-210 (243)
164 TIGR03873 F420-0_ABC_ATP propo 99.9 3.7E-21 8E-26 168.9 11.9 149 4-160 29-213 (256)
165 TIGR00968 3a0106s01 sulfate AB 99.9 3.1E-21 6.6E-26 167.7 11.3 146 4-157 28-204 (237)
166 COG0410 LivF ABC-type branched 99.9 1.9E-21 4.1E-26 166.2 9.7 152 4-164 31-217 (237)
167 PRK13632 cbiO cobalt transport 99.9 1.5E-21 3.3E-26 173.0 9.5 130 4-137 37-200 (271)
168 cd03299 ABC_ModC_like Archeal 99.9 3.1E-21 6.7E-26 167.5 11.1 145 4-156 27-202 (235)
169 PRK11701 phnK phosphonate C-P 99.9 2.1E-21 4.5E-26 170.7 10.0 145 4-156 34-224 (258)
170 PRK13549 xylose transporter AT 99.9 5.1E-21 1.1E-25 183.3 13.1 147 4-159 33-218 (506)
171 PRK13640 cbiO cobalt transport 99.9 2.1E-21 4.5E-26 173.2 9.6 150 4-161 35-220 (282)
172 PRK13648 cbiO cobalt transport 99.9 3.2E-21 7E-26 170.6 10.7 130 4-137 37-200 (269)
173 TIGR02323 CP_lyasePhnK phospho 99.9 3.2E-21 7E-26 168.8 10.6 144 4-155 31-220 (253)
174 PRK09544 znuC high-affinity zi 99.9 4.1E-21 9E-26 168.6 11.3 144 4-156 32-193 (251)
175 cd03246 ABCC_Protease_Secretio 99.9 2.9E-21 6.4E-26 160.2 9.7 115 4-137 30-153 (173)
176 TIGR02982 heterocyst_DevA ABC 99.9 1.1E-20 2.5E-25 162.2 13.7 131 4-137 33-199 (220)
177 cd03234 ABCG_White The White s 99.8 7.4E-21 1.6E-25 164.0 12.2 143 4-154 35-214 (226)
178 TIGR02324 CP_lyasePhnL phospho 99.8 1.7E-20 3.6E-25 161.4 14.0 143 4-153 36-218 (224)
179 PRK11288 araG L-arabinose tran 99.8 7.1E-21 1.5E-25 182.1 12.4 146 4-157 32-213 (501)
180 PRK15439 autoinducer 2 ABC tra 99.8 5.8E-21 1.2E-25 183.2 11.7 147 4-158 291-477 (510)
181 PRK10982 galactose/methyl gala 99.8 9.2E-21 2E-25 180.9 13.0 144 4-155 26-205 (491)
182 PRK13545 tagH teichoic acids e 99.8 4.1E-21 9E-26 182.8 10.3 152 4-162 52-221 (549)
183 PRK10419 nikE nickel transport 99.8 8.8E-21 1.9E-25 167.9 11.8 148 4-159 40-227 (268)
184 cd03251 ABCC_MsbA MsbA is an e 99.8 3.7E-21 7.9E-26 166.4 9.1 135 4-147 30-200 (234)
185 PRK10762 D-ribose transporter 99.8 7.2E-21 1.6E-25 182.1 11.8 146 4-157 280-468 (501)
186 PRK11288 araG L-arabinose tran 99.8 1.4E-20 2.9E-25 180.2 13.5 145 4-156 281-468 (501)
187 PRK09984 phosphonate/organopho 99.8 8.9E-21 1.9E-25 167.1 11.2 146 4-157 32-226 (262)
188 PRK13547 hmuV hemin importer A 99.8 8.3E-21 1.8E-25 168.6 10.9 149 4-160 29-231 (272)
189 PRK13549 xylose transporter AT 99.8 8.5E-21 1.8E-25 181.8 11.6 147 4-158 290-479 (506)
190 cd03213 ABCG_EPDR ABCG transpo 99.8 6.1E-21 1.3E-25 161.2 9.3 132 4-155 37-183 (194)
191 PRK10418 nikD nickel transport 99.8 1.7E-20 3.6E-25 164.7 12.2 144 4-155 31-212 (254)
192 PRK10247 putative ABC transpor 99.8 2.7E-20 5.9E-25 160.5 13.3 129 4-137 35-195 (225)
193 COG4148 ModC ABC-type molybdat 99.8 2.1E-21 4.5E-26 170.0 6.3 169 4-179 26-224 (352)
194 cd03217 ABC_FeS_Assembly ABC-t 99.8 7.1E-21 1.5E-25 161.5 9.4 136 4-155 28-176 (200)
195 PRK14242 phosphate transporter 99.8 8.7E-21 1.9E-25 166.1 10.0 145 4-156 34-220 (253)
196 PRK14273 phosphate ABC transpo 99.8 6.3E-21 1.4E-25 167.2 9.1 145 4-156 35-221 (254)
197 PRK10261 glutathione transport 99.8 5.6E-21 1.2E-25 187.4 9.6 151 4-161 352-541 (623)
198 PRK13642 cbiO cobalt transport 99.8 8.3E-21 1.8E-25 168.8 9.8 136 4-146 35-203 (277)
199 cd03222 ABC_RNaseL_inhibitor T 99.8 1.5E-20 3.3E-25 157.1 10.7 112 4-153 27-141 (177)
200 COG1123 ATPase components of v 99.8 8.9E-21 1.9E-25 180.0 10.2 152 4-162 319-508 (539)
201 TIGR02633 xylG D-xylose ABC tr 99.8 1.4E-20 3E-25 180.0 11.7 146 4-157 288-476 (500)
202 cd03252 ABCC_Hemolysin The ABC 99.8 6E-21 1.3E-25 165.5 8.3 128 4-136 30-193 (237)
203 PRK11022 dppD dipeptide transp 99.8 7.3E-21 1.6E-25 173.1 9.1 152 4-162 35-232 (326)
204 PRK14247 phosphate ABC transpo 99.8 2E-20 4.3E-25 163.5 11.4 146 4-157 31-218 (250)
205 cd03236 ABC_RNaseL_inhibitor_d 99.8 3.6E-20 7.8E-25 163.2 12.9 146 4-157 28-212 (255)
206 PRK03695 vitamin B12-transport 99.8 1.9E-20 4E-25 164.0 11.0 150 4-159 24-208 (248)
207 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 1.4E-20 3E-25 163.3 9.9 141 4-154 31-207 (238)
208 PRK09473 oppD oligopeptide tra 99.8 7.8E-21 1.7E-25 173.2 8.7 150 4-160 44-238 (330)
209 PRK14268 phosphate ABC transpo 99.8 1.8E-20 3.8E-25 164.9 10.7 144 4-155 40-224 (258)
210 cd03216 ABC_Carb_Monos_I This 99.8 2.4E-20 5.2E-25 153.5 10.8 124 4-154 28-152 (163)
211 cd03233 ABC_PDR_domain1 The pl 99.8 2.9E-20 6.4E-25 158.0 11.6 139 4-156 35-192 (202)
212 cd03254 ABCC_Glucan_exporter_l 99.8 9.4E-21 2E-25 163.3 8.4 130 4-137 31-195 (229)
213 cd03245 ABCC_bacteriocin_expor 99.8 1.3E-20 2.8E-25 161.5 9.2 142 4-154 32-208 (220)
214 cd03248 ABCC_TAP TAP, the Tran 99.8 2.1E-20 4.5E-25 161.0 10.5 129 4-137 42-206 (226)
215 cd03228 ABCC_MRP_Like The MRP 99.8 2.1E-20 4.6E-25 154.8 10.1 113 4-136 30-151 (171)
216 COG4175 ProV ABC-type proline/ 99.8 1.3E-20 2.7E-25 167.5 9.2 164 4-175 56-257 (386)
217 PRK14267 phosphate ABC transpo 99.8 2.6E-20 5.7E-25 163.1 11.2 146 4-157 32-221 (253)
218 TIGR02633 xylG D-xylose ABC tr 99.8 3.5E-20 7.5E-25 177.2 12.6 147 4-157 29-214 (500)
219 PRK15093 antimicrobial peptide 99.8 2.3E-20 5.1E-25 170.0 10.5 152 4-162 35-237 (330)
220 TIGR03269 met_CoM_red_A2 methy 99.8 2.6E-20 5.6E-25 179.0 11.0 147 4-157 312-501 (520)
221 PRK10744 pstB phosphate transp 99.8 3.2E-20 7E-25 163.4 10.7 145 4-156 41-227 (260)
222 cd03232 ABC_PDR_domain2 The pl 99.8 1.3E-19 2.8E-24 152.8 13.5 118 4-137 35-165 (192)
223 PRK15177 Vi polysaccharide exp 99.8 5.8E-20 1.2E-24 157.6 11.5 140 4-154 15-173 (213)
224 PRK15134 microcin C ABC transp 99.8 1.9E-20 4E-25 180.3 9.4 146 4-158 314-500 (529)
225 PRK14251 phosphate ABC transpo 99.8 4.2E-20 9E-25 161.6 10.6 145 4-156 32-218 (251)
226 PRK14241 phosphate transporter 99.8 1E-19 2.2E-24 159.9 13.2 144 4-155 32-218 (258)
227 PRK15134 microcin C ABC transp 99.8 3.2E-20 7E-25 178.7 10.7 147 4-157 37-230 (529)
228 PRK14269 phosphate ABC transpo 99.8 5E-20 1.1E-24 160.9 10.8 145 4-156 30-213 (246)
229 PRK14262 phosphate ABC transpo 99.8 5E-20 1.1E-24 161.0 10.8 143 4-156 31-217 (250)
230 COG1119 ModF ABC-type molybden 99.8 5E-20 1.1E-24 158.8 10.4 144 5-155 60-244 (257)
231 PRK14256 phosphate ABC transpo 99.8 5.3E-20 1.1E-24 161.1 10.8 146 4-157 32-220 (252)
232 TIGR01257 rim_protein retinal- 99.8 2.6E-20 5.7E-25 199.0 10.6 151 4-162 1967-2148(2272)
233 PRK10261 glutathione transport 99.8 2.5E-20 5.4E-25 182.8 9.6 153 4-163 44-248 (623)
234 PRK14235 phosphate transporter 99.8 4.4E-20 9.6E-25 163.3 10.2 145 4-156 47-234 (267)
235 cd03290 ABCC_SUR1_N The SUR do 99.8 8.2E-20 1.8E-24 156.5 11.4 132 4-137 29-199 (218)
236 CHL00131 ycf16 sulfate ABC tra 99.8 9.2E-20 2E-24 159.4 11.9 130 4-137 35-208 (252)
237 PRK14270 phosphate ABC transpo 99.8 6.8E-20 1.5E-24 160.4 11.1 146 4-157 32-219 (251)
238 TIGR03269 met_CoM_red_A2 methy 99.8 4.9E-20 1.1E-24 177.1 11.0 129 4-137 28-226 (520)
239 PRK14259 phosphate ABC transpo 99.8 1.1E-19 2.4E-24 161.0 12.4 144 4-155 41-224 (269)
240 PRK09580 sufC cysteine desulfu 99.8 5.8E-20 1.3E-24 160.2 10.4 131 4-137 29-202 (248)
241 PRK14245 phosphate ABC transpo 99.8 5.2E-20 1.1E-24 161.0 10.1 145 4-156 31-217 (250)
242 PRK14274 phosphate ABC transpo 99.8 4.6E-20 9.9E-25 162.3 9.7 146 4-157 40-227 (259)
243 cd03253 ABCC_ATM1_transporter 99.8 4.1E-20 9E-25 160.0 9.3 130 4-137 29-193 (236)
244 PRK10982 galactose/methyl gala 99.8 9.8E-20 2.1E-24 173.8 12.7 146 4-157 276-464 (491)
245 COG4181 Predicted ABC-type tra 99.8 2.4E-19 5.3E-24 147.3 13.1 134 4-141 38-207 (228)
246 PRK13409 putative ATPase RIL; 99.8 1E-19 2.2E-24 177.3 12.8 145 4-157 367-527 (590)
247 PRK14263 phosphate ABC transpo 99.8 1.4E-19 3E-24 159.8 12.3 144 4-155 36-219 (261)
248 cd03247 ABCC_cytochrome_bd The 99.8 1E-19 2.2E-24 151.5 10.9 117 4-137 30-154 (178)
249 PRK14248 phosphate ABC transpo 99.8 4.1E-20 8.9E-25 163.4 8.8 145 4-156 49-235 (268)
250 PRK14239 phosphate transporter 99.8 6.1E-20 1.3E-24 160.5 9.7 146 4-157 33-220 (252)
251 PRK14237 phosphate transporter 99.8 9E-20 1.9E-24 161.3 10.9 144 4-156 48-234 (267)
252 PRK14244 phosphate ABC transpo 99.8 9E-20 1.9E-24 159.6 10.7 145 4-156 33-220 (251)
253 PRK13409 putative ATPase RIL; 99.8 8.3E-20 1.8E-24 177.9 11.3 129 4-137 101-268 (590)
254 PRK14275 phosphate ABC transpo 99.8 6.7E-20 1.5E-24 163.8 9.6 145 4-156 67-253 (286)
255 cd03369 ABCC_NFT1 Domain 2 of 99.8 1.3E-19 2.8E-24 154.2 10.5 125 4-137 36-181 (207)
256 PRK14238 phosphate transporter 99.8 7.1E-20 1.5E-24 162.4 9.2 145 4-156 52-238 (271)
257 PRK14240 phosphate transporter 99.8 9.8E-20 2.1E-24 159.2 9.9 145 4-156 31-217 (250)
258 PRK14249 phosphate ABC transpo 99.8 1.4E-19 3.1E-24 158.3 11.0 145 4-156 32-218 (251)
259 PLN03211 ABC transporter G-25; 99.8 1.9E-19 4.1E-24 177.4 13.0 153 4-163 96-286 (659)
260 cd03244 ABCC_MRP_domain2 Domai 99.8 7.1E-20 1.5E-24 157.0 8.6 129 4-136 32-194 (221)
261 COG1134 TagH ABC-type polysacc 99.8 1.3E-19 2.7E-24 156.3 9.8 149 4-163 55-226 (249)
262 COG2274 SunT ABC-type bacterio 99.8 4.2E-20 9.2E-25 182.3 7.4 124 5-136 502-664 (709)
263 cd03250 ABCC_MRP_domain1 Domai 99.8 1.6E-19 3.4E-24 153.3 9.9 131 4-137 33-185 (204)
264 cd03223 ABCD_peroxisomal_ALDP 99.8 3E-19 6.6E-24 147.4 11.2 110 4-137 29-145 (166)
265 PRK14236 phosphate transporter 99.8 2.3E-19 5.1E-24 159.1 11.2 146 4-157 53-240 (272)
266 PRK14254 phosphate ABC transpo 99.8 4.2E-19 9.1E-24 158.7 12.9 142 4-153 67-248 (285)
267 TIGR01257 rim_protein retinal- 99.8 1.4E-19 3E-24 193.6 11.3 148 4-160 958-1136(2272)
268 PRK14258 phosphate ABC transpo 99.8 2.7E-19 5.9E-24 157.7 11.4 148 4-158 35-225 (261)
269 PRK14253 phosphate ABC transpo 99.8 1.9E-19 4E-24 157.3 10.3 146 4-157 31-217 (249)
270 PRK14243 phosphate transporter 99.8 3.1E-19 6.7E-24 157.7 11.4 144 4-155 38-221 (264)
271 COG4608 AppF ABC-type oligopep 99.8 1.7E-19 3.8E-24 157.8 9.5 135 4-153 41-179 (268)
272 PRK14260 phosphate ABC transpo 99.8 4.4E-19 9.6E-24 156.1 12.0 144 4-155 35-220 (259)
273 PRK14272 phosphate ABC transpo 99.8 3.4E-19 7.4E-24 155.8 11.2 144 4-157 32-220 (252)
274 PRK14271 phosphate ABC transpo 99.8 2.3E-19 5E-24 159.6 10.0 146 4-157 49-235 (276)
275 cd03238 ABC_UvrA The excision 99.8 4.1E-19 8.8E-24 148.3 10.6 118 4-137 23-146 (176)
276 PRK14255 phosphate ABC transpo 99.8 4.1E-19 9E-24 155.4 10.6 144 4-155 33-218 (252)
277 PRK14265 phosphate ABC transpo 99.8 6.2E-19 1.3E-23 156.6 11.8 144 4-155 48-231 (274)
278 PRK10938 putative molybdenum t 99.8 5.6E-19 1.2E-23 168.5 12.1 138 4-149 288-467 (490)
279 PRK14246 phosphate ABC transpo 99.8 1.7E-18 3.7E-23 152.5 14.1 142 4-154 38-222 (257)
280 PRK14261 phosphate ABC transpo 99.8 5.7E-19 1.2E-23 154.7 11.0 145 4-156 34-220 (253)
281 PRK15064 ABC transporter ATP-b 99.8 8.2E-19 1.8E-23 169.0 12.9 144 4-158 29-226 (530)
282 COG4525 TauB ABC-type taurine 99.8 1E-18 2.2E-23 146.4 11.4 136 4-146 33-195 (259)
283 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 4.2E-19 9E-24 143.4 8.7 107 4-152 28-135 (144)
284 PRK11176 lipid transporter ATP 99.8 1.4E-18 2.9E-23 168.9 13.7 129 4-137 371-536 (582)
285 PRK11174 cysteine/glutathione 99.8 1.2E-18 2.5E-23 169.6 13.2 124 4-136 378-540 (588)
286 TIGR02868 CydC thiol reductant 99.8 6E-19 1.3E-23 169.6 11.0 128 4-136 363-525 (529)
287 cd03288 ABCC_SUR2 The SUR doma 99.8 4.7E-19 1E-23 155.8 9.4 128 4-136 49-211 (257)
288 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 2.2E-19 4.7E-24 178.4 8.1 123 4-136 507-668 (710)
289 COG4133 CcmA ABC-type transpor 99.8 3.6E-18 7.9E-23 142.0 13.9 130 4-137 30-188 (209)
290 TIGR01842 type_I_sec_PrtD type 99.8 8.8E-19 1.9E-23 169.2 11.8 130 4-137 346-511 (544)
291 cd03289 ABCC_CFTR2 The CFTR su 99.8 2.2E-19 4.9E-24 159.8 6.9 129 4-137 32-194 (275)
292 PRK14252 phosphate ABC transpo 99.8 6.9E-19 1.5E-23 155.3 10.0 145 4-156 44-232 (265)
293 PRK11160 cysteine/glutathione 99.8 5.7E-19 1.2E-23 171.7 10.3 128 4-136 368-530 (574)
294 PRK14266 phosphate ABC transpo 99.8 7.5E-19 1.6E-23 153.6 9.8 142 4-153 31-214 (250)
295 COG4161 ArtP ABC-type arginine 99.8 2.2E-18 4.8E-23 140.6 11.4 144 4-155 30-212 (242)
296 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 3.3E-19 7.1E-24 176.5 8.0 126 4-136 481-641 (686)
297 cd00267 ABC_ATPase ABC (ATP-bi 99.8 1.7E-18 3.7E-23 141.1 10.9 121 4-152 27-148 (157)
298 PRK14257 phosphate ABC transpo 99.8 1.1E-18 2.4E-23 159.0 10.8 146 4-157 110-297 (329)
299 PRK10790 putative multidrug tr 99.8 1.8E-18 3.9E-23 168.5 12.6 128 4-136 369-531 (592)
300 PRK15064 ABC transporter ATP-b 99.8 2.1E-18 4.6E-23 166.1 12.8 141 4-155 347-506 (530)
301 COG1101 PhnK ABC-type uncharac 99.8 1.2E-18 2.6E-23 147.7 9.7 156 4-166 34-231 (263)
302 TIGR03375 type_I_sec_LssB type 99.8 7.8E-19 1.7E-23 174.1 9.8 125 4-136 493-656 (694)
303 PRK14264 phosphate ABC transpo 99.8 5.2E-18 1.1E-22 153.0 13.4 142 4-153 73-268 (305)
304 COG1123 ATPase components of v 99.8 1.4E-18 2.9E-23 165.2 9.9 159 4-169 37-240 (539)
305 TIGR01193 bacteriocin_ABC ABC- 99.8 9.7E-19 2.1E-23 173.7 9.2 124 4-136 502-665 (708)
306 PRK13657 cyclic beta-1,2-gluca 99.8 3.5E-18 7.5E-23 166.4 12.9 129 4-137 363-527 (588)
307 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 3.8E-18 8.3E-23 165.2 13.0 140 4-155 350-511 (552)
308 COG0444 DppD ABC-type dipeptid 99.8 1.2E-18 2.7E-23 155.5 8.7 152 4-162 33-232 (316)
309 TIGR01846 type_I_sec_HlyB type 99.8 1.4E-18 3.1E-23 172.2 10.1 125 4-136 485-648 (694)
310 COG1132 MdlB ABC-type multidru 99.8 1.3E-18 2.7E-23 168.9 9.5 125 4-136 357-520 (567)
311 PRK11819 putative ABC transpor 99.8 5.8E-18 1.3E-22 164.1 13.7 139 4-155 35-231 (556)
312 COG4988 CydD ABC-type transpor 99.8 4.3E-18 9.4E-23 161.5 12.4 130 4-137 349-512 (559)
313 COG4172 ABC-type uncharacteriz 99.8 1.7E-18 3.7E-23 158.2 9.2 144 4-155 315-498 (534)
314 cd03291 ABCC_CFTR1 The CFTR su 99.8 3.7E-18 8E-23 152.5 11.1 130 4-137 65-216 (282)
315 PRK10535 macrolide transporter 99.8 5.7E-18 1.2E-22 166.9 13.2 157 4-168 36-227 (648)
316 TIGR02203 MsbA_lipidA lipid A 99.8 5E-18 1.1E-22 164.4 12.6 129 4-137 360-525 (571)
317 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 6.8E-18 1.5E-22 163.4 13.5 139 4-155 33-229 (552)
318 PRK10636 putative ABC transpor 99.8 3.2E-18 6.9E-23 168.4 11.4 144 4-157 340-500 (638)
319 PRK11819 putative ABC transpor 99.8 5.9E-18 1.3E-22 164.1 12.7 141 4-155 352-513 (556)
320 TIGR00955 3a01204 The Eye Pigm 99.8 5.9E-18 1.3E-22 165.9 12.8 158 4-168 53-251 (617)
321 TIGR02204 MsbA_rel ABC transpo 99.7 7.4E-18 1.6E-22 163.5 12.6 129 4-137 368-532 (576)
322 TIGR01194 cyc_pep_trnsptr cycl 99.7 1.8E-17 3.9E-22 160.6 15.1 132 4-137 370-528 (555)
323 PRK11147 ABC transporter ATPas 99.7 7.4E-18 1.6E-22 165.7 12.6 141 4-155 347-508 (635)
324 TIGR02857 CydD thiol reductant 99.7 7.5E-18 1.6E-22 162.0 12.3 129 4-137 350-514 (529)
325 PRK10789 putative multidrug tr 99.7 9.9E-18 2.1E-22 162.8 13.2 128 4-136 343-506 (569)
326 TIGR00958 3a01208 Conjugate Tr 99.7 2E-18 4.2E-23 171.8 8.3 124 4-137 509-671 (711)
327 TIGR01192 chvA glucan exporter 99.7 3.8E-18 8.3E-23 166.3 10.2 130 4-137 363-527 (585)
328 KOG0059 Lipid exporter ABCA1 a 99.7 5.7E-18 1.2E-22 171.8 11.6 156 4-167 593-782 (885)
329 COG0488 Uup ATPase components 99.7 1.2E-17 2.7E-22 160.1 13.2 132 4-145 31-214 (530)
330 PRK10522 multidrug transporter 99.7 2.4E-17 5.1E-22 159.4 14.6 132 4-137 351-507 (547)
331 PRK10636 putative ABC transpor 99.7 2E-17 4.3E-22 162.8 13.5 143 4-156 29-218 (638)
332 PRK11147 ABC transporter ATPas 99.7 2.3E-17 4.9E-22 162.3 13.6 139 4-156 31-225 (635)
333 COG4618 ArpD ABC-type protease 99.7 7.6E-18 1.7E-22 157.4 9.2 126 4-136 364-528 (580)
334 PF00005 ABC_tran: ABC transpo 99.7 6.8E-18 1.5E-22 133.9 7.3 104 4-109 13-137 (137)
335 KOG0061 Transporter, ABC super 99.7 3.6E-17 7.9E-22 160.0 14.0 152 4-162 58-249 (613)
336 TIGR00956 3a01205 Pleiotropic 99.7 1.9E-17 4.2E-22 174.4 12.7 148 4-158 791-977 (1394)
337 KOG0057 Mitochondrial Fe/S clu 99.7 1.9E-17 4.1E-22 155.9 10.4 127 5-136 381-542 (591)
338 PLN03140 ABC transporter G fam 99.7 3.6E-17 7.7E-22 172.6 12.5 148 4-158 908-1094(1470)
339 COG4167 SapF ABC-type antimicr 99.7 5.9E-17 1.3E-21 134.7 10.9 156 4-181 41-232 (267)
340 COG4674 Uncharacterized ABC-ty 99.7 1.4E-17 3.1E-22 139.4 7.2 134 5-145 34-210 (249)
341 COG4619 ABC-type uncharacteriz 99.7 3.2E-17 6.9E-22 134.5 8.7 131 4-137 31-191 (223)
342 PLN03073 ABC transporter F fam 99.7 2.9E-17 6.3E-22 163.1 9.7 138 4-155 537-695 (718)
343 COG0396 sufC Cysteine desulfur 99.7 1.5E-16 3.3E-21 136.1 12.6 131 3-136 31-200 (251)
344 KOG0055 Multidrug/pheromone ex 99.7 5.7E-17 1.2E-21 164.6 11.3 125 4-136 381-544 (1228)
345 PLN03232 ABC transporter C fam 99.7 2.1E-17 4.7E-22 175.3 7.9 134 4-146 1264-1432(1495)
346 TIGR00954 3a01203 Peroxysomal 99.7 1.5E-16 3.2E-21 157.2 12.9 127 4-137 480-636 (659)
347 PLN03130 ABC transporter C fam 99.7 3.2E-17 6.9E-22 174.7 7.7 149 4-162 1267-1450(1622)
348 PTZ00265 multidrug resistance 99.7 1.6E-16 3.4E-21 168.0 12.8 148 4-159 413-654 (1466)
349 TIGR00956 3a01205 Pleiotropic 99.7 1.8E-16 4E-21 167.1 12.5 151 4-161 89-288 (1394)
350 COG4987 CydC ABC-type transpor 99.7 1.9E-16 4.1E-21 149.0 11.1 136 5-148 367-537 (573)
351 PTZ00265 multidrug resistance 99.7 2.3E-16 4.9E-21 166.9 13.1 126 4-136 1196-1415(1466)
352 COG4778 PhnL ABC-type phosphon 99.7 1.3E-16 2.7E-21 131.3 8.0 131 4-137 39-209 (235)
353 PLN03140 ABC transporter G fam 99.7 2.3E-16 4.9E-21 166.6 11.6 157 4-167 193-421 (1470)
354 COG0488 Uup ATPase components 99.6 8.4E-16 1.8E-20 147.6 12.0 128 5-144 351-499 (530)
355 TIGR00957 MRP_assoc_pro multi 99.6 3.9E-16 8.5E-21 166.0 10.5 129 4-136 1314-1476(1522)
356 PTZ00243 ABC transporter; Prov 99.6 6.2E-16 1.3E-20 164.6 11.5 134 4-145 1338-1506(1560)
357 COG4615 PvdE ABC-type sideroph 99.6 2.1E-15 4.6E-20 137.7 12.9 139 4-145 351-513 (546)
358 KOG0058 Peptide exporter, ABC 99.6 1.4E-15 3.1E-20 147.4 12.3 125 4-136 496-659 (716)
359 PLN03073 ABC transporter F fam 99.6 1.3E-15 2.9E-20 151.4 11.9 143 4-157 205-414 (718)
360 cd03272 ABC_SMC3_euk Eukaryoti 99.6 2E-15 4.3E-20 131.2 11.6 132 4-137 25-218 (243)
361 TIGR01271 CFTR_protein cystic 99.6 9.3E-16 2E-20 162.8 10.7 130 4-137 454-605 (1490)
362 cd03278 ABC_SMC_barmotin Barmo 99.6 1.4E-15 3.1E-20 129.0 8.9 126 4-136 24-172 (197)
363 cd03270 ABC_UvrA_I The excisio 99.6 6.6E-15 1.4E-19 127.4 12.1 75 60-137 118-196 (226)
364 COG4136 ABC-type uncharacteriz 99.6 5.2E-15 1.1E-19 119.6 10.3 130 4-137 30-192 (213)
365 COG4107 PhnK ABC-type phosphon 99.6 5.6E-15 1.2E-19 122.1 10.6 130 4-137 34-209 (258)
366 TIGR01271 CFTR_protein cystic 99.6 3E-15 6.4E-20 159.0 11.4 133 4-145 1247-1413(1490)
367 TIGR00957 MRP_assoc_pro multi 99.6 2.2E-15 4.7E-20 160.4 9.4 130 4-137 666-819 (1522)
368 cd03273 ABC_SMC2_euk Eukaryoti 99.6 4E-15 8.7E-20 130.4 9.3 132 4-137 27-226 (251)
369 PLN03130 ABC transporter C fam 99.6 6.1E-15 1.3E-19 157.4 11.7 130 4-136 645-796 (1622)
370 cd03240 ABC_Rad50 The catalyti 99.6 2.5E-14 5.5E-19 122.0 12.9 128 4-137 24-180 (204)
371 PTZ00243 ABC transporter; Prov 99.6 1.3E-14 2.9E-19 154.4 12.7 124 4-137 688-839 (1560)
372 cd03279 ABC_sbcCD SbcCD and ot 99.6 7.4E-15 1.6E-19 125.8 8.8 63 85-152 130-201 (213)
373 KOG0055 Multidrug/pheromone ex 99.6 1.6E-14 3.5E-19 147.0 10.5 126 4-137 1018-1183(1228)
374 PLN03232 ABC transporter C fam 99.5 4.2E-14 9E-19 150.4 14.2 125 4-136 645-796 (1495)
375 COG1245 Predicted ATPase, RNas 99.5 2E-14 4.3E-19 133.3 9.8 117 4-136 369-512 (591)
376 KOG0062 ATPase component of AB 99.5 1.4E-14 3E-19 135.8 8.8 128 5-146 109-260 (582)
377 cd03275 ABC_SMC1_euk Eukaryoti 99.5 3.8E-14 8.1E-19 124.1 10.6 133 4-137 24-216 (247)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.5 6.7E-15 1.5E-19 126.3 4.9 50 85-136 134-186 (212)
379 COG4138 BtuD ABC-type cobalami 99.5 4.8E-14 1E-18 116.7 8.2 141 4-156 27-204 (248)
380 COG4172 ABC-type uncharacteriz 99.5 8.9E-14 1.9E-18 127.5 9.2 152 4-162 38-236 (534)
381 KOG0927 Predicted transporter 99.5 9.2E-14 2E-18 131.0 9.4 125 5-136 419-562 (614)
382 KOG0056 Heavy metal exporter H 99.5 1.9E-13 4E-18 127.9 11.3 130 4-140 566-734 (790)
383 KOG0065 Pleiotropic drug resis 99.5 4.1E-14 9E-19 144.4 7.1 154 4-164 819-1012(1391)
384 COG1245 Predicted ATPase, RNas 99.5 9.6E-14 2.1E-18 128.8 8.6 122 3-136 101-269 (591)
385 cd03271 ABC_UvrA_II The excisi 99.5 1.1E-12 2.4E-17 115.9 14.7 76 59-137 149-229 (261)
386 COG5265 ATM1 ABC-type transpor 99.4 4.6E-13 1E-17 123.3 9.9 131 4-137 291-456 (497)
387 cd03280 ABC_MutS2 MutS2 homolo 99.4 9.3E-13 2E-17 111.7 10.2 47 87-136 100-147 (200)
388 KOG0054 Multidrug resistance-a 99.4 2.7E-13 5.9E-18 140.5 7.6 127 5-145 1169-1335(1381)
389 cd03283 ABC_MutS-like MutS-lik 99.4 3.5E-13 7.6E-18 114.6 6.7 109 4-136 27-144 (199)
390 COG1129 MglA ABC-type sugar tr 99.4 1.7E-12 3.8E-17 122.9 10.5 153 4-163 287-480 (500)
391 COG4178 ABC-type uncharacteriz 99.4 2E-12 4.2E-17 124.8 10.1 128 5-136 422-570 (604)
392 cd03276 ABC_SMC6_euk Eukaryoti 99.4 1.4E-11 3.1E-16 104.6 14.1 39 87-128 118-161 (198)
393 KOG0054 Multidrug resistance-a 99.4 3.6E-12 7.8E-17 132.3 11.6 130 4-136 549-699 (1381)
394 smart00534 MUTSac ATPase domai 99.3 2.8E-12 6.2E-17 107.6 6.2 113 5-136 2-118 (185)
395 cd03243 ABC_MutS_homologs The 99.3 6.7E-12 1.4E-16 106.6 8.3 113 4-136 31-147 (202)
396 KOG0066 eIF2-interacting prote 99.3 2.1E-11 4.5E-16 113.1 10.3 126 3-137 614-758 (807)
397 KOG0927 Predicted transporter 99.3 3.4E-11 7.3E-16 113.9 11.8 39 85-126 228-267 (614)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.2 6.6E-11 1.4E-15 101.7 10.4 43 91-136 143-188 (213)
399 cd03227 ABC_Class2 ABC-type Cl 99.2 5.3E-11 1.1E-15 97.8 9.0 111 4-136 23-137 (162)
400 cd03281 ABC_MSH5_euk MutS5 hom 99.2 4.3E-11 9.3E-16 102.8 8.8 106 4-129 31-140 (213)
401 PRK00635 excinuclease ABC subu 99.2 1.1E-10 2.5E-15 124.1 13.8 74 61-137 791-869 (1809)
402 TIGR02858 spore_III_AA stage I 99.2 1E-10 2.2E-15 104.0 10.6 38 3-40 112-149 (270)
403 cd03239 ABC_SMC_head The struc 99.2 6E-11 1.3E-15 99.2 8.3 51 85-136 101-154 (178)
404 KOG2355 Predicted ABC-type tra 99.2 6.7E-11 1.4E-15 100.4 8.4 133 5-140 43-209 (291)
405 KOG0062 ATPase component of AB 99.2 8.7E-11 1.9E-15 110.5 9.8 122 5-137 393-536 (582)
406 COG4170 SapD ABC-type antimicr 99.2 9.8E-11 2.1E-15 99.8 8.1 141 4-154 35-229 (330)
407 cd03282 ABC_MSH4_euk MutS4 hom 99.2 1.2E-10 2.6E-15 99.5 8.3 114 4-136 31-147 (204)
408 PTZ00132 GTP-binding nuclear p 99.1 3E-10 6.5E-15 96.9 9.7 39 87-128 161-205 (215)
409 cd03284 ABC_MutS1 MutS1 homolo 99.1 4.4E-10 9.4E-15 96.8 9.8 107 4-136 32-149 (216)
410 TIGR00630 uvra excinuclease AB 99.1 2.3E-09 5.1E-14 109.1 14.8 53 84-137 834-888 (924)
411 cd03285 ABC_MSH2_euk MutS2 hom 99.1 6E-10 1.3E-14 96.3 8.6 122 4-153 32-161 (222)
412 PRK00349 uvrA excinuclease ABC 99.1 4E-09 8.6E-14 107.7 15.7 51 84-137 836-890 (943)
413 TIGR01069 mutS2 MutS2 family p 99.0 8E-10 1.7E-14 110.9 8.8 114 4-136 324-441 (771)
414 cd03287 ABC_MSH3_euk MutS3 hom 99.0 1.9E-09 4.1E-14 93.3 9.3 115 4-136 33-150 (222)
415 KOG0060 Long-chain acyl-CoA tr 99.0 2.7E-09 5.8E-14 101.9 10.8 126 5-136 464-623 (659)
416 COG2401 ABC-type ATPase fused 99.0 3.7E-09 8.1E-14 97.8 10.6 131 4-137 411-565 (593)
417 PF02463 SMC_N: RecF/RecN/SMC 98.9 1.6E-08 3.4E-13 86.6 11.6 69 59-136 123-195 (220)
418 PRK08533 flagellar accessory p 98.9 1.6E-08 3.6E-13 87.8 11.3 39 98-137 117-160 (230)
419 KOG0063 RNAse L inhibitor, ABC 98.9 4.9E-09 1.1E-13 97.2 8.3 126 4-133 369-510 (592)
420 cd01120 RecA-like_NTPases RecA 98.9 6.3E-09 1.4E-13 83.2 7.8 120 5-137 2-134 (165)
421 KOG0064 Peroxisomal long-chain 98.9 3.9E-09 8.5E-14 99.9 7.0 124 5-137 511-666 (728)
422 COG1100 GTPase SAR1 and relate 98.9 1.3E-09 2.8E-14 92.6 3.4 167 3-178 6-182 (219)
423 KOG0066 eIF2-interacting prote 98.8 4.7E-09 1E-13 97.7 6.6 51 86-143 420-471 (807)
424 cd01876 YihA_EngB The YihA (En 98.8 3.4E-07 7.4E-12 73.0 15.8 60 164-247 109-169 (170)
425 cd01131 PilT Pilus retraction 98.8 7.5E-08 1.6E-12 81.7 11.7 102 4-136 3-105 (198)
426 PRK10416 signal recognition pa 98.8 1.9E-07 4.1E-12 85.0 14.3 38 3-40 115-152 (318)
427 COG3845 ABC-type uncharacteriz 98.8 9.3E-08 2E-12 90.0 12.4 151 4-161 286-480 (501)
428 PRK13695 putative NTPase; Prov 98.8 1.1E-08 2.4E-13 84.6 5.7 123 4-137 2-133 (174)
429 COG3910 Predicted ATPase [Gene 98.8 1.8E-07 4E-12 78.5 12.4 125 3-136 38-184 (233)
430 cd04163 Era Era subfamily. Er 98.7 8.9E-07 1.9E-11 70.4 16.0 115 98-246 50-166 (168)
431 cd01898 Obg Obg subfamily. Th 98.7 2.5E-07 5.5E-12 74.9 12.7 117 100-246 49-168 (170)
432 PRK00089 era GTPase Era; Revie 98.7 3.5E-07 7.5E-12 81.7 14.7 22 4-25 7-28 (292)
433 cd01124 KaiC KaiC is a circadi 98.7 1.9E-08 4.2E-13 83.3 5.9 39 98-137 95-137 (187)
434 TIGR02788 VirB11 P-type DNA tr 98.7 9.1E-08 2E-12 86.6 10.7 98 4-131 146-243 (308)
435 cd00880 Era_like Era (E. coli 98.7 1.3E-07 2.8E-12 74.1 10.4 120 98-248 44-163 (163)
436 PRK09435 membrane ATPase/prote 98.7 8.9E-07 1.9E-11 81.0 16.4 42 2-43 56-97 (332)
437 PRK00409 recombination and DNA 98.7 5E-08 1.1E-12 98.3 9.0 112 4-136 329-446 (782)
438 cd03241 ABC_RecN RecN ATPase i 98.7 8.7E-08 1.9E-12 85.3 9.6 48 87-136 179-229 (276)
439 KOG0065 Pleiotropic drug resis 98.6 3E-08 6.4E-13 102.3 5.6 157 4-167 143-345 (1391)
440 cd01881 Obg_like The Obg-like 98.6 5.8E-07 1.3E-11 73.0 12.1 19 7-25 1-19 (176)
441 smart00382 AAA ATPases associa 98.6 7.3E-07 1.6E-11 68.4 12.0 34 3-36 3-36 (148)
442 cd03286 ABC_MSH6_euk MutS6 hom 98.6 2.2E-07 4.8E-12 80.2 10.0 114 4-136 32-149 (218)
443 COG0178 UvrA Excinuclease ATPa 98.6 5.6E-07 1.2E-11 89.2 13.6 52 84-136 828-881 (935)
444 PRK00635 excinuclease ABC subu 98.6 4.9E-07 1.1E-11 97.0 13.9 76 61-137 1681-1759(1809)
445 PRK00454 engB GTP-binding prot 98.6 4.4E-06 9.5E-11 69.5 16.7 118 99-248 70-193 (196)
446 TIGR00436 era GTP-binding prot 98.6 1.3E-06 2.9E-11 77.3 13.9 22 4-25 2-23 (270)
447 PRK14974 cell division protein 98.6 2.4E-06 5.3E-11 78.2 15.3 155 2-182 140-296 (336)
448 PF02421 FeoB_N: Ferrous iron 98.6 6.2E-07 1.3E-11 73.5 10.1 153 4-244 2-156 (156)
449 PRK06067 flagellar accessory p 98.6 8.3E-07 1.8E-11 76.9 11.3 36 3-39 26-62 (234)
450 PRK07721 fliI flagellum-specif 98.5 4E-07 8.6E-12 86.2 9.9 147 4-165 160-335 (438)
451 TIGR00750 lao LAO/AO transport 98.5 2E-06 4.3E-11 77.6 13.9 41 2-42 34-74 (300)
452 cd01888 eIF2_gamma eIF2-gamma 98.5 3.1E-06 6.7E-11 71.8 14.4 30 4-33 2-32 (203)
453 cd03115 SRP The signal recogni 98.5 1.4E-06 3E-11 71.8 11.9 38 3-40 1-38 (173)
454 TIGR00554 panK_bact pantothena 98.5 6.2E-08 1.3E-12 87.0 4.0 39 2-40 62-102 (290)
455 cd04139 RalA_RalB RalA/RalB su 98.5 6.6E-07 1.4E-11 71.7 9.6 22 3-24 1-22 (164)
456 cd01895 EngA2 EngA2 subfamily. 98.5 2.2E-06 4.7E-11 68.8 12.5 64 163-248 111-174 (174)
457 cd04104 p47_IIGP_like p47 (47- 98.5 6.2E-06 1.3E-10 69.6 15.6 32 3-34 2-33 (197)
458 TIGR01420 pilT_fam pilus retra 98.5 1.3E-06 2.8E-11 80.3 12.3 102 4-136 124-226 (343)
459 cd00881 GTP_translation_factor 98.5 1.7E-06 3.7E-11 70.9 11.1 127 98-249 61-187 (189)
460 PF00448 SRP54: SRP54-type pro 98.5 1.4E-06 3E-11 74.0 10.8 155 2-182 1-157 (196)
461 cd00157 Rho Rho (Ras homology) 98.5 1.1E-06 2.5E-11 71.0 9.6 68 165-247 104-171 (171)
462 cd03112 CobW_like The function 98.5 9.9E-07 2.2E-11 72.2 9.2 23 4-26 2-24 (158)
463 cd03242 ABC_RecF RecF is a rec 98.5 1.4E-06 3E-11 77.3 10.7 39 87-126 192-238 (270)
464 PRK09270 nucleoside triphospha 98.5 1.3E-07 2.9E-12 81.8 3.8 38 2-39 33-71 (229)
465 cd04160 Arfrp1 Arfrp1 subfamil 98.4 1.7E-06 3.8E-11 69.9 9.8 23 5-27 2-24 (167)
466 PRK14723 flhF flagellar biosyn 98.4 3.3E-06 7.1E-11 84.4 13.5 87 3-109 186-274 (767)
467 PRK10463 hydrogenase nickel in 98.4 9.8E-06 2.1E-10 72.7 15.1 177 3-246 105-286 (290)
468 cd01862 Rab7 Rab7 subfamily. 98.4 4.3E-06 9.3E-11 67.7 11.3 59 164-248 108-166 (172)
469 PRK09866 hypothetical protein; 98.4 2.7E-05 5.9E-10 76.3 18.2 24 3-26 70-93 (741)
470 smart00053 DYNc Dynamin, GTPas 98.4 1.1E-05 2.4E-10 70.6 14.2 31 4-34 28-60 (240)
471 cd01128 rho_factor Transcripti 98.4 1.3E-06 2.9E-11 76.9 8.5 145 4-176 18-210 (249)
472 cd00882 Ras_like_GTPase Ras-li 98.4 1.7E-06 3.6E-11 66.7 8.2 113 98-245 44-156 (157)
473 TIGR00064 ftsY signal recognit 98.4 8.8E-06 1.9E-10 72.5 13.8 109 3-126 73-183 (272)
474 cd01130 VirB11-like_ATPase Typ 98.4 3.6E-07 7.8E-12 76.6 4.6 35 3-37 26-60 (186)
475 PF00009 GTP_EFTU: Elongation 98.4 7.3E-07 1.6E-11 74.5 6.5 113 98-248 69-186 (188)
476 cd04164 trmE TrmE (MnmE, ThdF, 98.4 5.7E-06 1.2E-10 65.5 11.0 23 3-25 2-24 (157)
477 cd01878 HflX HflX subfamily. 98.4 5.6E-06 1.2E-10 69.7 11.5 23 3-25 42-64 (204)
478 PRK12298 obgE GTPase CgtA; Rev 98.3 1.9E-05 4.2E-10 73.8 15.7 79 100-181 208-291 (390)
479 cd04165 GTPBP1_like GTPBP1-lik 98.3 1.9E-05 4.1E-10 68.4 14.4 210 5-245 2-219 (224)
480 PRK11889 flhF flagellar biosyn 98.3 4.7E-06 1E-10 77.7 11.1 38 3-40 242-279 (436)
481 cd00009 AAA The AAA+ (ATPases 98.3 2.5E-06 5.5E-11 66.1 8.0 33 4-36 21-53 (151)
482 TIGR00231 small_GTP small GTP- 98.3 2.1E-05 4.5E-10 61.4 13.3 24 3-26 2-25 (161)
483 PRK12299 obgE GTPase CgtA; Rev 98.3 9.3E-06 2E-10 74.5 12.8 120 98-248 205-327 (335)
484 cd01125 repA Hexameric Replica 98.3 1.3E-05 2.8E-10 69.7 13.2 119 3-137 2-156 (239)
485 cd02025 PanK Pantothenate kina 98.3 3.6E-07 7.7E-12 78.9 3.1 36 4-39 1-38 (220)
486 cd03114 ArgK-like The function 98.3 1.4E-06 3.1E-11 70.6 6.2 38 5-42 2-39 (148)
487 TIGR02729 Obg_CgtA Obg family 98.3 1.3E-05 2.8E-10 73.4 12.8 120 99-249 205-329 (329)
488 PF01926 MMR_HSR1: 50S ribosom 98.3 1E-06 2.2E-11 67.7 4.7 20 5-24 2-21 (116)
489 TIGR03015 pepcterm_ATPase puta 98.3 1.9E-05 4.1E-10 69.2 13.4 97 4-116 45-141 (269)
490 cd01879 FeoB Ferrous iron tran 98.3 6E-06 1.3E-10 65.7 9.1 113 98-247 42-155 (158)
491 KOG0063 RNAse L inhibitor, ABC 98.3 1.9E-06 4.2E-11 80.3 6.9 128 4-139 102-273 (592)
492 PF13304 AAA_21: AAA domain; P 98.3 3E-06 6.4E-11 71.2 7.5 48 88-136 246-295 (303)
493 PRK05703 flhF flagellar biosyn 98.3 7.2E-06 1.6E-10 77.5 10.8 100 4-124 223-326 (424)
494 cd01894 EngA1 EngA1 subfamily. 98.3 3.7E-05 8.1E-10 60.8 13.5 110 98-247 44-156 (157)
495 cd00820 PEPCK_HprK Phosphoenol 98.3 1.1E-06 2.3E-11 67.6 4.2 31 4-40 17-47 (107)
496 cd01864 Rab19 Rab19 subfamily. 98.2 2.4E-05 5.1E-10 63.3 12.2 58 163-246 106-163 (165)
497 cd04107 Rab32_Rab38 Rab38/Rab3 98.2 2E-05 4.4E-10 66.3 12.2 22 4-25 2-23 (201)
498 cd01884 EF_Tu EF-Tu subfamily. 98.2 1.9E-05 4.1E-10 66.9 11.7 24 3-26 3-26 (195)
499 PRK14722 flhF flagellar biosyn 98.2 1.8E-05 3.8E-10 73.5 11.9 91 3-113 138-232 (374)
500 PRK05399 DNA mismatch repair p 98.2 3.1E-06 6.8E-11 86.3 7.5 112 4-134 609-724 (854)
No 1
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=100.00 E-value=2.6e-64 Score=427.48 Aligned_cols=245 Identities=44% Similarity=0.798 Sum_probs=229.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhh
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~ 80 (250)
|+|+++||||+||||||+|..+.+++...++++.++|+|||+++.+|+++++|++.++++++|+++++|||||++||+++
T Consensus 1 m~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~ 80 (290)
T KOG1533|consen 1 MPFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEY 80 (290)
T ss_pred CCcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 81 ~~~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
+..++ .|+...+... ...|+|||+|||+|+++++....++++.+.+.+.++++|+++|+|+|++|++|+|.+++++.+
T Consensus 81 l~~~i-dwl~~~l~~~-~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~t 158 (290)
T KOG1533|consen 81 LEANI-DWLLEKLKPL-TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLAT 158 (290)
T ss_pred HHhhh-HHHHHHhhhc-cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHH
Confidence 99999 9999998874 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhcCCeeeecCchhhhcchhhh----hhccC-cCHHHHHHHhhc-ccchhHHHHHHHHHHHHhhcCCceeEEeecCCH
Q 025642 161 MVQLELPHVNILSKMDLVTNKKEI----EDYLN-PESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE 234 (250)
Q Consensus 161 ~~~~~~p~v~vlsK~Dl~~~~~~~----~~~~~-~~~~~l~~~~~~-~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~ 234 (250)
|+.+++|||||+||+|++++++.+ +.|.+ .|.++|.+.++. +..+||+|||++||++|+||+||+|.|||++|+
T Consensus 159 Ml~melphVNvlSK~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nk 238 (290)
T KOG1533|consen 159 MLHMELPHVNVLSKADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNK 238 (290)
T ss_pred HHhhcccchhhhhHhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCH
Confidence 999999999999999999987543 44444 477788776654 556799999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 025642 235 SRYFLYLSSMVWC 247 (250)
Q Consensus 235 ~~~~~~~~~~~~~ 247 (250)
|||.++++.||+.
T Consensus 239 eSml~l~~~IDkA 251 (290)
T KOG1533|consen 239 ESMLRLQQTIDKA 251 (290)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999974
No 2
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=100.00 E-value=1.2e-63 Score=417.68 Aligned_cols=246 Identities=63% Similarity=1.135 Sum_probs=232.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhh
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~ 80 (250)
|+|.+.|+||+||||||+|+.|..+.+..++++.++|+|||++.+.|+..+++|++|+++++||.+.+|||||++||+++
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEy 81 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEY 81 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 81 ~~~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
+.+++ .|+...+..+ +.+|+|||+|||+++++|..+++++++++++++.++++||++|++++.|..||+|+++.++++
T Consensus 82 l~~Nl-dwL~~~~Gd~-eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsA 159 (273)
T KOG1534|consen 82 LLENL-DWLEEEIGDV-EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSA 159 (273)
T ss_pred HHHHH-HHHHhhccCc-cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHH
Confidence 99999 9999988765 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhcCCeeeecCchhhhcc--hhhhhhccCcCHHHHHH--HhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHH
Q 025642 161 MVQLELPHVNILSKMDLVTN--KKEIEDYLNPESQFLLS--ELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESR 236 (250)
Q Consensus 161 ~~~~~~p~v~vlsK~Dl~~~--~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~ 236 (250)
|+++++||+||+||+||++. ++.+++|+++|...+.+ +.+ ...+||++|++.|+++++|||||+|+|++.+||+|
T Consensus 160 Mi~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~-~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeS 238 (273)
T KOG1534|consen 160 MISLEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEIN-LRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEES 238 (273)
T ss_pred HHHhcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccc-cccHHHHHHHHHHHHHhccccceeeeecCCCCHHH
Confidence 99999999999999999984 34799999999876654 233 23379999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhc
Q 025642 237 YFLYLSSMVWCLS 249 (250)
Q Consensus 237 ~~~~~~~~~~~~~ 249 (250)
|..+|++||-|..
T Consensus 239 i~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 239 INIILSYIDDAIQ 251 (273)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998853
No 3
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=100.00 E-value=1.2e-52 Score=365.84 Aligned_cols=234 Identities=49% Similarity=0.831 Sum_probs=185.4
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhhhHH
Q 025642 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD 86 (250)
Q Consensus 7 iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~~ls 86 (250)
|+||+||||||+|+.+..+++..++++.++|+|||+++++|++++||||.++++++|+++++||||++++||+++..++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~- 79 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENI- 79 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGH-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHH-
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcC
Q 025642 87 DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 166 (250)
Q Consensus 87 ~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~ 166 (250)
.|+...+... +++|+|+|+|||+|+++++..++.+++.|++ +.++++||++|++.+.+|.+|+|++++++++|+++++
T Consensus 80 d~l~~~i~~~-~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~l 157 (238)
T PF03029_consen 80 DWLDEEIEKY-EDDYLLFDTPGQIELFTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLEL 157 (238)
T ss_dssp HHHHHHHHHH-H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhc-CCcEEEEeCCCCEEEEEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCC
Confidence 9998888665 6799999999999999999999999999977 7888899999999999999999999999999999999
Q ss_pred CeeeecCchhhhcch--hhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCc-eeEEeecCCHHHHHHHHHH
Q 025642 167 PHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV-SFMPLDLRKESRYFLYLSS 243 (250)
Q Consensus 167 p~v~vlsK~Dl~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~-~f~~l~~~~~~~~~~~~~~ 243 (250)
||+||+||+|+++++ ..++++.+ .+.+...++.. +++++++|+++|++|+++ +|+|+|++|++++.+|++.
T Consensus 158 P~vnvlsK~Dl~~~~~~~~l~~~~d--~~~l~~~~~~~----~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~ 231 (238)
T PF03029_consen 158 PHVNVLSKIDLLSKYLEFILEWFED--PDSLEDLLESD----YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAA 231 (238)
T ss_dssp EEEEEE--GGGS-HHHHHHHHHHHS--HHHHHHHHHT-----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHH
T ss_pred CEEEeeeccCcccchhHHHHHHhcC--hHHHHHHHHHH----HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHH
Confidence 999999999999843 23444443 44444444322 899999999999999998 9999999999999999999
Q ss_pred hhhhhc
Q 025642 244 MVWCLS 249 (250)
Q Consensus 244 ~~~~~~ 249 (250)
+|+++.
T Consensus 232 id~a~~ 237 (238)
T PF03029_consen 232 IDKANQ 237 (238)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999863
No 4
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=100.00 E-value=9.8e-35 Score=252.05 Aligned_cols=241 Identities=27% Similarity=0.443 Sum_probs=207.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
+.++.++|.+||||||+++-+.+++....-..+++|+|||..+++|+.++||||.+.+.++|++++||||||++.|++.+
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF 98 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLF 98 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHH
Confidence 46889999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred hhhHH--HHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhh
Q 025642 82 EDNLD--DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (250)
Q Consensus 82 ~~~ls--~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (250)
..++. ..+.+.-.. +-+|+|+|.|||++.++|.....-|.+.++.. ...+++|.+|+...+.|..|+|++|.++|
T Consensus 99 ~tk~dqv~~~iek~~~--~~~~~liDTPGQIE~FtWSAsGsIIte~lass-~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 99 ATKFDQVIELIEKRAE--EFDYVLIDTPGQIEAFTWSASGSIITETLASS-FPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHhhc--ccCEEEEcCCCceEEEEecCCccchHhhHhhc-CCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 99883 233333333 56799999999999999999986667778654 45668999999999999999999999999
Q ss_pred hHhHhcCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcC-CceeEEeecCCHHHHH
Q 025642 160 AMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESRYF 238 (250)
Q Consensus 160 ~~~~~~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~-~~~f~~l~~~~~~~~~ 238 (250)
.+++..+|.+.|+||+|+..+.+.++++ .|.+.+.+++++........|.+++...+++|= -+.+.-++.-.-+-+.
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~fa~eWm--~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d 253 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEFALEWM--TDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD 253 (366)
T ss_pred HHHhccCCeEEEEecccccccHHHHHHH--HHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence 9999999999999999999987555543 367778888886566678999999999999864 4888888887777777
Q ss_pred HHHHHhhhh
Q 025642 239 LYLSSMVWC 247 (250)
Q Consensus 239 ~~~~~~~~~ 247 (250)
.++..+|+-
T Consensus 254 df~~av~~~ 262 (366)
T KOG1532|consen 254 DFFTAVDES 262 (366)
T ss_pred HHHHHHHHH
Confidence 777777654
No 5
>PRK13768 GTPase; Provisional
Probab=99.97 E-value=1.7e-30 Score=228.51 Aligned_cols=244 Identities=30% Similarity=0.544 Sum_probs=212.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhh
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~ 80 (250)
|++++++.||+||||||++..++..+...+.++.+.+.||+.+..+|.++.++++.++.+++|...+++|+++.+++++.
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~ 80 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDL 80 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHH
Confidence 78999999999999999999999998877778999999999998999889999999999999999999999999999988
Q ss_pred hhhhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 81 ~~~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
...+. .|+...+... +++|+++|.||+.+++.++...+.+.+.+.+.+ +-++++++|+....++.++.....+..+.
T Consensus 81 ~~~~~-~~l~~~l~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~ 157 (253)
T PRK13768 81 LLTKA-DEIKEEIESL-DADYVLVDTPGQMELFAFRESGRKLVERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSV 157 (253)
T ss_pred HHHHH-HHHHHHHHhc-CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHH
Confidence 88887 7777777654 679999999999999998888878888886544 56688899999888999999998888899
Q ss_pred HhHhcCCeeeecCchhhhcch--hhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCC-ceeEEeecCCHHHH
Q 025642 161 MVQLELPHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESRY 237 (250)
Q Consensus 161 ~~~~~~p~v~vlsK~Dl~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~f~~l~~~~~~~~ 237 (250)
+.+.+.|++.|+||+|++++. ..+.++++ +++.+.+++....+.+ ++|++++++.+++++. .+++|+++.+++.+
T Consensus 158 ~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl 235 (253)
T PRK13768 158 QLRLGLPQIPVLNKADLLSEEELERILKWLE-DPEYLLEELKLEKGLQ-GLLSLELLRALEETGLPVRVIPVSAKTGEGF 235 (253)
T ss_pred HHHcCCCEEEEEEhHhhcCchhHHHHHHHHh-CHHHHHHHHhcccchH-HHHHHHHHHHHHHHCCCCcEEEEECCCCcCH
Confidence 899999999999999999764 12344444 6667766776555555 9999999999999997 59999999999999
Q ss_pred HHHHHHhhhhhc
Q 025642 238 FLYLSSMVWCLS 249 (250)
Q Consensus 238 ~~~~~~~~~~~~ 249 (250)
..++..+.++|.
T Consensus 236 ~~L~~~I~~~l~ 247 (253)
T PRK13768 236 DELYAAIQEVFC 247 (253)
T ss_pred HHHHHHHHHHcC
Confidence 999999999874
No 6
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=6.9e-28 Score=203.85 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=121.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc---------------CCCCCCcccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~---------------~~~~y~~~~~i~~~i~---------- 58 (250)
+++|+||+|||||||+|+|.++.+|++|+|.++|.++.. +++..+|..++-++++
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~ 109 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLS 109 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCC
Confidence 578999999999999999999999999999999976531 3444567778877776
Q ss_pred -------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 -------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 -------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
+.++++++||.... ..|..... .++++++|||||+. +|++++|||||+ |||....+++ +.++.|+++
T Consensus 110 k~eA~~~A~~lL~~VGL~~ka-~~yP~qLSGGQqQRVAIARALaM--~P~vmLFDEPTSALDPElv~EVL-~vm~~LA~e 185 (240)
T COG1126 110 KAEAREKALELLEKVGLADKA-DAYPAQLSGGQQQRVAIARALAM--DPKVMLFDEPTSALDPELVGEVL-DVMKDLAEE 185 (240)
T ss_pred HHHHHHHHHHHHHHcCchhhh-hhCccccCcHHHHHHHHHHHHcC--CCCEEeecCCcccCCHHHHHHHH-HHHHHHHHc
Confidence 56788899998763 22222222 24556999999999 999999999999 9999999999 999999999
Q ss_pred CCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 130 ~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
|.|+++|. |.+....+..+++++...+.+
T Consensus 186 GmTMivVT----HEM~FAr~VadrviFmd~G~i 214 (240)
T COG1126 186 GMTMIIVT----HEMGFAREVADRVIFMDQGKI 214 (240)
T ss_pred CCeEEEEe----chhHHHHHhhheEEEeeCCEE
Confidence 99998875 777777777777776655543
No 7
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.95 E-value=7.6e-28 Score=210.60 Aligned_cols=167 Identities=19% Similarity=0.281 Sum_probs=123.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc------ccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV------AMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~------~~~i~~~i~----------- 58 (250)
+++|+||||||||||+|+|+|+++|.+|+|.++|.+... +.++| || .++++|.+.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~ 109 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFG 109 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccccc
Confidence 579999999999999999999999999999999987632 23333 22 234444443
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
++++++.+|+.......+.--.-.+++++|||++|+. +|+++++||||+ ||+.++.+++ ++++++++
T Consensus 110 ~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ--~~~iLLLDEPTs~LDi~~Q~evl-~ll~~l~~ 186 (258)
T COG1120 110 RPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ--ETPILLLDEPTSHLDIAHQIEVL-ELLRDLNR 186 (258)
T ss_pred CCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc--CCCEEEeCCCccccCHHHHHHHH-HHHHHHHH
Confidence 6677899998776433211111123455999999999 999999999999 9999999999 99999985
Q ss_pred -CCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeecCchhh
Q 025642 129 -RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (250)
Q Consensus 129 -~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK~Dl 177 (250)
+|.++++|. |++.-...|++.+++...+.+....+...|++..-+
T Consensus 187 ~~~~tvv~vl----HDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l 232 (258)
T COG1120 187 EKGLTVVMVL----HDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENL 232 (258)
T ss_pred hcCCEEEEEe----cCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHH
Confidence 589988774 666667889888877766555443333446665433
No 8
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.5e-27 Score=206.57 Aligned_cols=155 Identities=17% Similarity=0.303 Sum_probs=120.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----CCCCC-Cc--------ccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PV--------AMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----~~~~y-~~--------~~~i~~~i~------------ 58 (250)
+++|+||||||||||+|+|.|+++|.+|+|.+.|..... ..++| || .++|+|.+.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~ 111 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRR 111 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccc
Confidence 579999999999999999999999999999998875422 24666 33 235666664
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
++++++++|+....... +..+ .+.+++.|||||+. +|+++++|||++ +|+.++..++ +++++++
T Consensus 112 ~~~~d~~~v~~aL~~Vgm~~~~~r~--i~~LSGGQ~QRV~lARAL~~--~p~lllLDEP~~gvD~~~~~~i~-~lL~~l~ 186 (254)
T COG1121 112 LNKKDKEKVDEALERVGMEDLRDRQ--IGELSGGQKQRVLLARALAQ--NPDLLLLDEPFTGVDVAGQKEIY-DLLKELR 186 (254)
T ss_pred ccHHHHHHHHHHHHHcCchhhhCCc--ccccCcHHHHHHHHHHHhcc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHH
Confidence 77889999987643211 1122 23455999999999 999999999999 9999999999 9999999
Q ss_pred hCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCC
Q 025642 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (250)
Q Consensus 128 ~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p 167 (250)
++|++|++|+ |++.....|++.+++.....+..+.|
T Consensus 187 ~eg~tIl~vt----HDL~~v~~~~D~vi~Ln~~~~~~G~~ 222 (254)
T COG1121 187 QEGKTVLMVT----HDLGLVMAYFDRVICLNRHLIASGPP 222 (254)
T ss_pred HCCCEEEEEe----CCcHHhHhhCCEEEEEcCeeEeccCh
Confidence 8899998886 77877788888776655554444433
No 9
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=9.4e-26 Score=202.36 Aligned_cols=152 Identities=15% Similarity=0.248 Sum_probs=118.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-------CcccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-------~~~~~i~~~i~------------ 58 (250)
+++++||||||||||+|+|+|+.+|++|+|.+.|.++.. +.++| ++.++++|++.
T Consensus 33 i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~ 112 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEE 112 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhH
Confidence 589999999999999999999999999999999988753 23344 44567776654
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC-C
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN-F 131 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~-~ 131 (250)
++++++.++|.+..... .-.+. ..++++.||.+|+. +|+++|+||||+ ||+.++..++ +++++++++| .
T Consensus 113 ~~~~~~~~l~~~~L~~~~~~~-~~~lS~G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~-~~l~~l~~~g~~ 188 (293)
T COG1131 113 AEERIEELLELFGLEDKANKK-VRTLSGGMKQRLSIALALLH--DPELLILDEPTSGLDPESRREIW-ELLRELAKEGGV 188 (293)
T ss_pred HHHHHHHHHHHcCCchhhCcc-hhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHhCCCc
Confidence 55788999998732111 11111 23344999999999 999999999999 9999999999 9999998876 6
Q ss_pred eEEEEEeccccccccHHHHHHhhHHhhhhHhH
Q 025642 132 NVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (250)
Q Consensus 132 ~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~ 163 (250)
+|+ +.+|.+.+...+|+.+++...+.+.
T Consensus 189 tvl----issH~l~e~~~~~d~v~il~~G~~~ 216 (293)
T COG1131 189 TIL----LSTHILEEAEELCDRVIILNDGKII 216 (293)
T ss_pred EEE----EeCCcHHHHHHhCCEEEEEeCCEEE
Confidence 774 4579999998888877766655543
No 10
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=6.4e-26 Score=190.05 Aligned_cols=146 Identities=18% Similarity=0.258 Sum_probs=116.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccC------CC-------CCCcccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE------NF-------DYPVAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~------~~-------~y~~~~~i~~~i~------------ 58 (250)
++|++|||||||||++|+|++++.|++|.|+++|.|...+ .+ +.+..+++++++.
T Consensus 30 i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~ 109 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKE 109 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhH
Confidence 6899999999999999999999999999999999886432 22 2233456666654
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~~~~l------s~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
.+++++++++... ++.-..++ ++.||+||.+ +|++++||||++ +|..+.+.+. +++.+++
T Consensus 110 ~kari~~l~k~l~l~~~------~~rRv~~~S~G~kqkV~iARAlvh--~P~i~vlDEP~sGLDi~~~r~~~-dfi~q~k 180 (245)
T COG4555 110 IKARIAELSKRLQLLEY------LDRRVGEFSTGMKQKVAIARALVH--DPSILVLDEPTSGLDIRTRRKFH-DFIKQLK 180 (245)
T ss_pred HHHHHHHHHHHhChHHH------HHHHHhhhchhhHHHHHHHHHHhc--CCCeEEEcCCCCCccHHHHHHHH-HHHHHhh
Confidence 5667777777654 34433333 3999999999 999999999999 9999999988 9999998
Q ss_pred hCCCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 128 ~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
++|.+++ ++||.+.+...+|+.+++...+.+
T Consensus 181 ~egr~vi----FSSH~m~EvealCDrvivlh~Gev 211 (245)
T COG4555 181 NEGRAVI----FSSHIMQEVEALCDRVIVLHKGEV 211 (245)
T ss_pred cCCcEEE----EecccHHHHHHhhheEEEEecCcE
Confidence 8888874 568999999999997765554443
No 11
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.91 E-value=2e-24 Score=194.84 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=114.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-------CcccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-------~~~~~i~~~i~------------ 58 (250)
+++++||||||||||+++|+|+++|++|+|.+.|.++.. ..++| ++..++++++.
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 114 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAA 114 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 689999999999999999999999999999999987632 22343 23456666553
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~v 133 (250)
++++++.+++.+.......--....++++.||++|+. +|+++|+||||+ ||+.++..+. +++++++++|.+|
T Consensus 115 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~--~P~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~g~ti 191 (306)
T PRK13537 115 ARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN--DPDVLVLDEPTTGLDPQARHLMW-ERLRSLLARGKTI 191 (306)
T ss_pred HHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEE
Confidence 3356677777653211111011112334999999999 999999999999 9999999988 8999997778888
Q ss_pred EEEEeccccccccHHHHHHhhHHhhhhHhH
Q 025642 134 CAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (250)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~~ 163 (250)
+++ +|.+.+...+|+.++....+.+.
T Consensus 192 ll~----sH~l~e~~~~~d~i~il~~G~i~ 217 (306)
T PRK13537 192 LLT----THFMEEAERLCDRLCVIEEGRKI 217 (306)
T ss_pred EEE----CCCHHHHHHhCCEEEEEECCEEE
Confidence 654 68898888888877766555443
No 12
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.1e-24 Score=190.97 Aligned_cols=162 Identities=14% Similarity=0.147 Sum_probs=130.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc----------cCCCCC-Ccc------cChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-PVA------MDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~----------~~~~~y-~~~------~~i~~~i~-------- 58 (250)
+.||||++|||||||+|++.++.+|++|+|.++|.|.. ++.+++ +|. .++.+++.
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~ 113 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV 113 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCC
Confidence 57999999999999999999999999999999997752 233443 332 34555543
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++++.+||.... ..|..+... +++++.|||||+. +|++|+.||||+ |||.+.+.++ ++++++++
T Consensus 114 ~k~ei~~RV~elLelVgL~dk~-~~yP~qLSGGQKQRVaIARALa~--~P~iLL~DEaTSALDP~TT~sIL-~LL~~In~ 189 (339)
T COG1135 114 PKAEIKQRVAELLELVGLSDKA-DRYPAQLSGGQKQRVAIARALAN--NPKILLCDEATSALDPETTQSIL-ELLKDINR 189 (339)
T ss_pred CHHHHHHHHHHHHHHcCChhhh-ccCchhcCcchhhHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH-HHHHHHHH
Confidence 77889999998653 222222222 3456999999999 999999999999 9999999999 99999986
Q ss_pred C-CCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeecC
Q 025642 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (250)
Q Consensus 129 ~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vls 173 (250)
+ |.||++|. |.+.-..++|+++.....+.+.-+.+..+||+
T Consensus 190 ~lglTIvlIT----HEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 190 ELGLTIVLIT----HEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred HcCCEEEEEe----chHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 5 99998774 88888899999999888888887777777765
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.91 E-value=2.6e-24 Score=186.06 Aligned_cols=150 Identities=20% Similarity=0.223 Sum_probs=121.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCC-------CCcccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFD-------YPVAMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~-------y~~~~~i~~~i~----------- 58 (250)
..+++||+||||||++|+|.++++|++|+|.++|.+... .+++ .+|+.++.+++.
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~ 108 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKE 108 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHH
Confidence 468999999999999999999999999999999987633 2344 467888888886
Q ss_pred -----HHHHHHHhCCCCC-CCchhhhhhhhh-hHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-
Q 025642 59 -----LEDVMEELGLGPN-GGLIYCMEHLED-NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (250)
Q Consensus 59 -----~~~vm~~~~L~~~-g~~~~~~~~~~~-~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~- 129 (250)
++++|+.+||.|. -+.+|..+.... ++++.+||||+. +|+++++|||+. +||.++.++- +.+.+++++
T Consensus 109 ~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAa--dP~ilLMDEPFgALDpI~R~~lQ-~e~~~lq~~l 185 (309)
T COG1125 109 RIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAA--DPPILLMDEPFGALDPITRKQLQ-EEIKELQKEL 185 (309)
T ss_pred HHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhc--CCCeEeecCCccccChhhHHHHH-HHHHHHHHHh
Confidence 7899999999985 455555555543 456999999999 999999999999 9999999877 777777654
Q ss_pred CCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 130 ~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
++|+++|. |.+.+..+..+.+.....+
T Consensus 186 ~kTivfVT----HDidEA~kLadri~vm~~G 212 (309)
T COG1125 186 GKTIVFVT----HDIDEALKLADRIAVMDAG 212 (309)
T ss_pred CCEEEEEe----cCHHHHHhhhceEEEecCC
Confidence 99998875 8888877777765544333
No 14
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=1e-23 Score=181.36 Aligned_cols=131 Identities=21% Similarity=0.205 Sum_probs=103.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-------CcccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-------~~~~~i~~~i~------- 58 (250)
.++|+||+|||||||++++.|+.+|++|.|.+.|.|... ++++| -+++++.|++.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~ 112 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG 112 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC
Confidence 478999999999999999999999999999999976522 33333 34667888776
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
.+++++.+|+++.....+..+... ++++++|||||+. +|++++.||||. ||..+...++ +++++++
T Consensus 113 ~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~--~P~iilADEPTgnLD~~t~~~V~-~ll~~~~ 189 (226)
T COG1136 113 KSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN--NPKIILADEPTGNLDSKTAKEVL-ELLRELN 189 (226)
T ss_pred CChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc--CCCeEEeeCccccCChHHHHHHH-HHHHHHH
Confidence 455677789886543222223332 4566999999999 999999999999 9999999999 9999997
Q ss_pred hC-CCeEEEEE
Q 025642 128 SR-NFNVCAVY 137 (250)
Q Consensus 128 ~~-~~~vi~v~ 137 (250)
++ |.++++|.
T Consensus 190 ~~~g~tii~VT 200 (226)
T COG1136 190 KERGKTIIMVT 200 (226)
T ss_pred HhcCCEEEEEc
Confidence 65 88888775
No 15
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.3e-24 Score=184.63 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=106.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc---------CCCCCCcccChhhhhh----------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS---------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~---------~~~~y~~~~~i~~~i~---------------- 58 (250)
+++|+||+|||||||+|+++|+.+|++|+|.+.|..+.. ++....|..++.+++.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~ 110 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARER 110 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHH
Confidence 478999999999999999999999999999999975421 1222234455666654
Q ss_pred HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 59 LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 59 ~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
++++++.+||...... |+.+.. ..+++++|||+|+. +|++|++|||+. ||..++..+...+++-+++.++|+++|
T Consensus 111 a~~~L~~VgL~~~~~~-~P~qLSGGMrQRVaiARAL~~--~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllV 187 (248)
T COG1116 111 AKELLELVGLAGFEDK-YPHQLSGGMRQRVAIARALAT--RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLV 187 (248)
T ss_pred HHHHHHHcCCcchhhc-CccccChHHHHHHHHHHHHhc--CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEE
Confidence 7788999999876422 222222 13455999999999 999999999999 999999998855555566678998877
Q ss_pred EeccccccccHHHHHHh
Q 025642 137 YLLDSQFITDVTKFISG 153 (250)
Q Consensus 137 ~l~d~~~~~d~~~~~s~ 153 (250)
. |.+.+.....++
T Consensus 188 T----Hdi~EAv~LsdR 200 (248)
T COG1116 188 T----HDVDEAVYLADR 200 (248)
T ss_pred e----CCHHHHHhhhCE
Confidence 4 666655444443
No 16
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.91 E-value=2.8e-24 Score=193.39 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=112.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-------CcccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-------~~~~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..++| .+..++++++.
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 100 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDE 100 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 689999999999999999999999999999999976521 22444 22345555543
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~ 132 (250)
++++++.+++.+...... .... .+++++.||++++. +|+++|+||||+ ||+.++..++ +++++++++|.+
T Consensus 101 ~~~~~~~~l~~~~l~~~~~~~~-~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g~t 176 (302)
T TIGR01188 101 AEERAEELLELFELGEAADRPV-GTYSGGMRRRLDIAASLIH--QPDVLFLDEPTTGLDPRTRRAIW-DYIRALKEEGVT 176 (302)
T ss_pred HHHHHHHHHHHcCChhHhCCch-hhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCE
Confidence 455778888865321111 1111 12344999999999 999999999999 9999999988 899998777888
Q ss_pred EEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
++++ +|.+.+...+++.++....+.+
T Consensus 177 vi~~----sH~~~~~~~~~d~v~~l~~G~i 202 (302)
T TIGR01188 177 ILLT----THYMEEADKLCDRIAIIDHGRI 202 (302)
T ss_pred EEEE----CCCHHHHHHhCCEEEEEECCEE
Confidence 8655 5888888888887766555444
No 17
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.91 E-value=7.7e-24 Score=193.62 Aligned_cols=153 Identities=15% Similarity=0.174 Sum_probs=113.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-------CcccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-------~~~~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..++| ++..++.+++.
T Consensus 69 i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 148 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTRE 148 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 689999999999999999999999999999999987532 22333 23345555543
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~v 133 (250)
++++++.+++.+.......--....++++.||++|+. +|+++|+||||+ ||+.++..+. +++++++++|.+|
T Consensus 149 ~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~--~P~lLiLDEPt~gLD~~~r~~l~-~~l~~l~~~g~ti 225 (340)
T PRK13536 149 IEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSLLARGKTI 225 (340)
T ss_pred HHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEE
Confidence 3356777787653211111011112334999999999 999999999999 9999999999 9999987778888
Q ss_pred EEEEeccccccccHHHHHHhhHHhhhhHhH
Q 025642 134 CAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (250)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~~ 163 (250)
+++ +|.+.+...+|+.+++...+.+.
T Consensus 226 lis----SH~l~e~~~~~d~i~il~~G~i~ 251 (340)
T PRK13536 226 LLT----THFMEEAERLCDRLCVLEAGRKI 251 (340)
T ss_pred EEE----CCCHHHHHHhCCEEEEEECCEEE
Confidence 644 68888888998887776555443
No 18
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=7.4e-24 Score=182.17 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=117.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccC--------CCCC---------CcccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------NFDY---------PVAMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~--------~~~y---------~~~~~i~~~i~-------- 58 (250)
++||+|++|||||||.++++|+.+|+.|+|.+.|...... .+.+ .|..++++.+.
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~ 114 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL 114 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCc
Confidence 5799999999999999999999999999999999654221 1111 22334554443
Q ss_pred ------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-
Q 025642 59 ------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (250)
Q Consensus 59 ------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~- 129 (250)
+.++++.+||.+.-..++..+... +.++++|||||.. +|++||+||||+ ||...+.+++ +++.+++++
T Consensus 115 ~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~--~PklLIlDEptSaLD~siQa~Il-nlL~~l~~~~ 191 (252)
T COG1124 115 SKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP--EPKLLILDEPTSALDVSVQAQIL-NLLLELKKER 191 (252)
T ss_pred cHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc--CCCEEEecCchhhhcHHHHHHHH-HHHHHHHHhc
Confidence 578999999998654455545443 2356999999999 999999999999 9999999999 999999864
Q ss_pred CCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 130 ~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
+.+.++| +|++.-...+|+++.+...+.+
T Consensus 192 ~lt~l~I----sHdl~~v~~~cdRi~Vm~~G~i 220 (252)
T COG1124 192 GLTYLFI----SHDLALVEHMCDRIAVMDNGQI 220 (252)
T ss_pred CceEEEE----eCcHHHHHHHhhheeeeeCCeE
Confidence 7777666 4888777888888776666554
No 19
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.90 E-value=8.8e-24 Score=180.81 Aligned_cols=143 Identities=14% Similarity=0.200 Sum_probs=103.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC-Cc------ccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-PV------AMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y-~~------~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... +.+.| ++ ..++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 110 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGV 110 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999999876421 23444 22 235555442
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++++.+++.+...... .+.. .++++++||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 111 ~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~ 186 (216)
T TIGR00960 111 PPRDANERVSAALEKVGLEGKAHALP-MQLSGGEQQRVAIARAIVH--KPPLLLADEPTGNLDPELSRDIM-RLFEEFNR 186 (216)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCCh-hhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHH
Confidence 455677888865321111 1111 23344999999999 999999999999 9999999998 88888876
Q ss_pred CCCeEEEEEeccccccccHHHHHHhh
Q 025642 129 RNFNVCAVYLLDSQFITDVTKFISGC 154 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d~~~~~s~~ 154 (250)
+|.+++++. |.......+++.+
T Consensus 187 ~~~tii~vs----H~~~~~~~~~d~i 208 (216)
T TIGR00960 187 RGTTVLVAT----HDINLVETYRHRT 208 (216)
T ss_pred CCCEEEEEe----CCHHHHHHhCCEE
Confidence 678876664 6655555555543
No 20
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=9.5e-24 Score=181.18 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=113.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC-------CcccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y-------~~~~~i~~~i~-------- 58 (250)
+.+|+||+|||||||+|.|.|+++|++|+|.+.|.+... .++++ +.++++.|++.
T Consensus 36 i~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~ 115 (263)
T COG1127 36 ILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK 115 (263)
T ss_pred EEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhcc
Confidence 578999999999999999999999999999999988622 12222 33567777765
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhhhhh-HHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDN-LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~~~~-ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+..-++..||.+..+..|..+....- .+++||||++. +|+++++||||+ +||.+...+- +++++++
T Consensus 116 lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial--dPell~~DEPtsGLDPI~a~~~~-~LI~~L~ 192 (263)
T COG1127 116 LPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL--DPELLFLDEPTSGLDPISAGVID-ELIRELN 192 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc--CCCEEEecCCCCCCCcchHHHHH-HHHHHHH
Confidence 33445678888875444443333322 23999999999 999999999999 9999998887 9999998
Q ss_pred hC-CCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 128 ~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
+. |.|+++|. |.+......++.+.+...+.+
T Consensus 193 ~~lg~T~i~VT----HDl~s~~~i~Drv~~L~~gkv 224 (263)
T COG1127 193 DALGLTVIMVT----HDLDSLLTIADRVAVLADGKV 224 (263)
T ss_pred HhhCCEEEEEE----CChHHHHhhhceEEEEeCCEE
Confidence 65 88887774 666665666665554444433
No 21
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=1.3e-23 Score=180.62 Aligned_cols=159 Identities=13% Similarity=0.134 Sum_probs=124.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc---CCCCCC-------cccChhhhhh---------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDYP-------VAMDIRELIS--------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~---~~~~y~-------~~~~i~~~i~--------------- 58 (250)
+.|++|||||||||.+|+|.|++.|++|+|.+.|.+... ..++|- +.+++.|.+.
T Consensus 30 i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~ 109 (300)
T COG4152 30 IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK 109 (300)
T ss_pred EEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH
Confidence 579999999999999999999999999999999987643 356662 3556666554
Q ss_pred -HHHHHHHhCCCCCCCc-hhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025642 59 -LEDVMEELGLGPNGGL-IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (250)
Q Consensus 59 -~~~vm~~~~L~~~g~~-~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~ 135 (250)
+..+|+++++..+... +..+..- +++...+..++.+ +|+++|+|||++ |||.+...+- +.+.+++++|.||+
T Consensus 110 ~~~~wLer~~i~~~~~~kIk~LSKG-nqQKIQfisaviH--ePeLlILDEPFSGLDPVN~elLk-~~I~~lk~~GatIi- 184 (300)
T COG4152 110 KLQAWLERLEIVGKKTKKIKELSKG-NQQKIQFISAVIH--EPELLILDEPFSGLDPVNVELLK-DAIFELKEEGATII- 184 (300)
T ss_pred HHHHHHHhccccccccchHHHhhhh-hhHHHHHHHHHhc--CCCEEEecCCccCCChhhHHHHH-HHHHHHHhcCCEEE-
Confidence 6789999999765422 2111111 2233677778888 999999999999 9999996655 99999999999985
Q ss_pred EEeccccccccHHHHHHhhHHhhhhHhHhcCCeee
Q 025642 136 VYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 170 (250)
Q Consensus 136 v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~ 170 (250)
+++|.|.+.+..|+.+++...+...+..+...
T Consensus 185 ---fSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ 216 (300)
T COG4152 185 ---FSSHRMEHVEELCDRLLMLKKGQTVLYGTVED 216 (300)
T ss_pred ---EecchHHHHHHHhhhhheecCCceEEeccHHH
Confidence 66899999999999999887777666655544
No 22
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.90 E-value=1.3e-23 Score=192.26 Aligned_cols=157 Identities=13% Similarity=0.151 Sum_probs=117.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC-Cc------ccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-PV------AMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y-~~------~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..++| ++ ..++++++.
T Consensus 33 i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~ 112 (343)
T TIGR02314 33 IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT 112 (343)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCC
Confidence 589999999999999999999999999999999976521 23444 22 345555543
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++++.+|+.+.... +..+.. .+++++.||++|+. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 113 ~~~~~~~~v~e~l~~vgL~~~~~~-~~~~LSgGqkQRV~IARAL~~--~P~iLLlDEPts~LD~~t~~~i~-~lL~~l~~ 188 (343)
T TIGR02314 113 PKDEIKRKVTELLALVGLGDKHDS-YPSNLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTQSIL-ELLKEINR 188 (343)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 4567888888754211 111222 23445999999999 999999999999 9999999999 99999876
Q ss_pred C-CCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCe
Q 025642 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (250)
Q Consensus 129 ~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~ 168 (250)
+ |.+++++. |.+....++++.+++...+.+....+.
T Consensus 189 ~~g~tiiliT----H~~~~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 189 RLGLTILLIT----HEMDVVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred hcCCEEEEEe----CCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 4 88887664 888888888888777666655443333
No 23
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.90 E-value=2e-23 Score=177.37 Aligned_cols=143 Identities=17% Similarity=0.155 Sum_probs=103.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc----cCCCCC-Cc-------ccChhhhhh------------H
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDY-PV-------AMDIRELIS------------L 59 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~----~~~~~y-~~-------~~~i~~~i~------------~ 59 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++. .+.+.| ++ ..++++++. +
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 107 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQA 107 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHH
Confidence 58999999999999999999999999999999987642 123333 21 224555442 4
Q ss_pred HHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 60 EDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 60 ~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
.++++.+++.+...... .+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++++|.+++++.
T Consensus 108 ~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~s 183 (205)
T cd03226 108 ETVLKDLDLYALKERHP-LSLSGGQKQRLAIAAALLS--GKDLLIFDEPTSGLDYKNMERVG-ELIRELAAQGKAVIVIT 183 (205)
T ss_pred HHHHHHcCCchhcCCCc-hhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEEe
Confidence 56778888875321111 1111 23344999999999 999999999999 9999999988 88888876688876663
Q ss_pred eccccccccHHHHHHhh
Q 025642 138 LLDSQFITDVTKFISGC 154 (250)
Q Consensus 138 l~d~~~~~d~~~~~s~~ 154 (250)
|...+...+++.+
T Consensus 184 ----H~~~~~~~~~d~i 196 (205)
T cd03226 184 ----HDYEFLAKVCDRV 196 (205)
T ss_pred ----CCHHHHHHhCCEE
Confidence 6665555555543
No 24
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.90 E-value=2.2e-23 Score=178.44 Aligned_cols=142 Identities=19% Similarity=0.213 Sum_probs=101.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-C------cccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P------VAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-~------~~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| + +..++++.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 111 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG 111 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC
Confidence 589999999999999999999999999999998865421 23443 2 2235554432
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+|+.+...... .+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~ 187 (218)
T cd03255 112 VPKKERRERAEELLERVGLGDRLNHYP-SELSGGQQQRVAIARALAN--DPKIILADEPTGNLDSETGKEVM-ELLRELN 187 (218)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhcCh-hhcCHHHHHHHHHHHHHcc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 455777888865321110 1111 23344999999999 999999999999 9999999988 8888887
Q ss_pred h-CCCeEEEEEeccccccccHHHHHHhh
Q 025642 128 S-RNFNVCAVYLLDSQFITDVTKFISGC 154 (250)
Q Consensus 128 ~-~~~~vi~v~l~d~~~~~d~~~~~s~~ 154 (250)
+ .+.+++++. |...+.. +++.+
T Consensus 188 ~~~~~tii~~s----H~~~~~~-~~d~v 210 (218)
T cd03255 188 KEAGTTIVVVT----HDPELAE-YADRI 210 (218)
T ss_pred HhcCCeEEEEE----CCHHHHh-hhcEE
Confidence 6 578887664 5555443 44443
No 25
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=4.5e-23 Score=176.06 Aligned_cols=144 Identities=16% Similarity=0.131 Sum_probs=102.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----CCCCC-Cc------ccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-PV------AMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----~~~~y-~~------~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| ++ ..++++.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 107 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEI 107 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHH
Confidence 589999999999999999999999999999998876421 23344 22 234554442
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~ 132 (250)
+.++++.+++.+...... .+.. .+++++.||++++. +|+++|+||||+ ||+.++..++ ++++++++ .|.+
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~-~~LSgG~~qrl~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~t 183 (213)
T cd03259 108 RARVRELLELVGLEGLLNRYP-HELSGGQQQRVALARALAR--EPSLLLLDEPLSALDAKLREELR-EELKELQRELGIT 183 (213)
T ss_pred HHHHHHHHHHcCChhhhhcCh-hhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCE
Confidence 345677788764321110 1111 12344999999999 999999999999 9999999998 88888865 4788
Q ss_pred EEEEEeccccccccHHHHHHhhH
Q 025642 133 VCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
++++. |.......+++.++
T Consensus 184 ii~~s----H~~~~~~~~~d~v~ 202 (213)
T cd03259 184 TIYVT----HDQEEALALADRIA 202 (213)
T ss_pred EEEEe----cCHHHHHHhcCEEE
Confidence 76653 66555555555443
No 26
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.7e-23 Score=181.29 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=104.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC-Cc------ccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-PV------AMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y-~~------~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| ++ ..++++.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~ 107 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTR 107 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccC
Confidence 589999999999999999999999999999998865421 22333 22 235554432
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+++.+..... ..+.. .+++++.||++++. +|+++|+||||+ ||+.++..++ +++++++
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgG~~qrv~ia~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 183 (235)
T cd03261 108 LSEEEIREIVLEKLEAVGLRGAEDLY-PAELSGGMKKRVALARALAL--DPELLLYDEPTAGLDPIASGVID-DLIRSLK 183 (235)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHH
Confidence 34567778886532111 11111 13344999999999 999999999999 9999999999 8888887
Q ss_pred h-CCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 128 S-RNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 128 ~-~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+ .|.+++++. |...+...+++.++..
T Consensus 184 ~~~~~tvi~vs----H~~~~~~~~~d~v~~l 210 (235)
T cd03261 184 KELGLTSIMVT----HDLDTAFAIADRIAVL 210 (235)
T ss_pred HhcCcEEEEEe----cCHHHHHHhcCEEEEE
Confidence 6 478886663 6666556666655443
No 27
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.1e-23 Score=178.58 Aligned_cols=160 Identities=14% Similarity=0.163 Sum_probs=122.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC-------CcccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y-------~~~~~i~~~i~-------- 58 (250)
.++||||+|||||||+|+|.|+..|++|+|.+.|.++.. ..+++ .+..++.+++.
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s 111 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTS 111 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccch
Confidence 478999999999999999999999999999999987732 22333 22333433332
Q ss_pred ----------------HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ----------------~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+-+.++++|+.+..-+...--.-.++++++|||+|+. +|++++.|||++ |||.+.+.+| +
T Consensus 112 ~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q--~pkiILADEPvasLDp~~a~~Vm-~ 188 (258)
T COG3638 112 TWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ--QPKIILADEPVASLDPESAKKVM-D 188 (258)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc--CCCEEecCCcccccChhhHHHHH-H
Confidence 5567888888765422211112224566999999999 999999999999 9999999999 8
Q ss_pred HHHHHHh-CCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeee
Q 025642 122 FVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 170 (250)
Q Consensus 122 ll~~l~~-~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~ 170 (250)
+++++++ .|.|+++. .|.+.-..+|+.+++-...+.+.++.|.-.
T Consensus 189 ~l~~in~~~g~Tvi~n----LH~vdlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 189 ILKDINQEDGITVIVN----LHQVDLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred HHHHHHHHcCCEEEEE----echHHHHHHHHhhheEecCCcEEEeCChhh
Confidence 9999875 48888543 477777789999998888888877777654
No 28
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=1.8e-23 Score=173.02 Aligned_cols=147 Identities=18% Similarity=0.226 Sum_probs=115.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC-----ccCCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AAENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp-----~~~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||+|||||||++.++|+..|.+|.|.++|.|- +.+.++. +..++|.+++.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~ 106 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQ 106 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCHHH
Confidence 5899999999999999999999999999999999874 2222222 12344555543
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhhh------hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHLE------DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~~------~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
++.+..+.|++... ++++ +++++++||++.. +.+++++|||++ |||.-+.++. .++.++.+
T Consensus 107 r~~v~~aa~~vGl~~~~------~RLP~~LSGGqRQRvALARclvR--~~PilLLDEPFsALdP~LR~eMl-~Lv~~l~~ 177 (231)
T COG3840 107 REKVEAAAAQVGLAGFL------KRLPGELSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRAEML-ALVSQLCD 177 (231)
T ss_pred HHHHHHHHHHhChhhHh------hhCccccCchHHHHHHHHHHHhc--cCCeEEecCchhhcCHHHHHHHH-HHHHHHHH
Confidence 77888888887653 3333 3455999999999 999999999999 9999999988 99999985
Q ss_pred -CCCeEEEEEeccccccccHHHHHHhhHHhhhhHhH
Q 025642 129 -RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (250)
Q Consensus 129 -~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~ 163 (250)
++.|+++|. |...|.....+++++...+.+.
T Consensus 178 E~~~TllmVT----H~~~Da~~ia~~~~fl~~Gri~ 209 (231)
T COG3840 178 ERKMTLLMVT----HHPEDAARIADRVVFLDNGRIA 209 (231)
T ss_pred hhCCEEEEEe----CCHHHHHHhhhceEEEeCCEEE
Confidence 489998774 8888888888877665555443
No 29
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.1e-23 Score=183.28 Aligned_cols=146 Identities=18% Similarity=0.216 Sum_probs=111.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--------cCCCCC-Ccc-------cChhhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-PVA-------MDIRELIS--------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--------~~~~~y-~~~-------~~i~~~i~--------- 58 (250)
.++|+||||||||||+++++|+++|.+|.|.++|.+.. .+.++| .|+ .+|.+.+.
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~ 111 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLP 111 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCC
Confidence 47899999999999999999999999999999887643 123333 111 13333332
Q ss_pred -------HHHHHHHhCCCCCCCchhhhhhhhh------hHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 -------LEDVMEELGLGPNGGLIYCMEHLED------NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 -------~~~vm~~~~L~~~g~~~~~~~~~~~------~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
++++++.+|+.... +.... +++++||.+|+. +|+++|+||||+ ||+..++.++ ++++
T Consensus 112 ~~e~~~rv~~~l~~vgl~~~~------~r~p~~LSGGqkqRvaIA~vLa~--~P~iliLDEPta~LD~~~~~~l~-~~l~ 182 (235)
T COG1122 112 REEIEERVAEALELVGLEELL------DRPPFNLSGGQKQRVAIAGVLAM--GPEILLLDEPTAGLDPKGRRELL-ELLK 182 (235)
T ss_pred HHHHHHHHHHHHHHcCchhhc------cCCccccCCcceeeHHhhHHHHc--CCCEEEEcCCCCCCCHHHHHHHH-HHHH
Confidence 67888888987542 22222 234999999999 999999999999 9999999999 9999
Q ss_pred HHHhC-CCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 125 HLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 125 ~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
+++++ |++++++ +|.+.....|++.++....+.+
T Consensus 183 ~L~~~~~~tii~~----tHd~~~~~~~ad~v~vl~~G~i 217 (235)
T COG1122 183 KLKEEGGKTIIIV----THDLELVLEYADRVVVLDDGKI 217 (235)
T ss_pred HHHhcCCCeEEEE----eCcHHHHHhhCCEEEEEECCEE
Confidence 99876 6888765 4888877888777666555554
No 30
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.89 E-value=6.3e-23 Score=175.15 Aligned_cols=143 Identities=17% Similarity=0.214 Sum_probs=102.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC-Cc------ccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-PV------AMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y-~~------~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. +.+.| ++ ..++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 109 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGK 109 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCC
Confidence 589999999999999999999999999999999876421 23344 22 234544432
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++++.+++.+...... .+.. .+++++.||++++. +|+++|+||||+ +|+.++..+. ++++++++
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~ 185 (214)
T TIGR02673 110 KEREIQRRVGAALRQVGLEHKADAFP-EQLSGGEQQRVAIARAIVN--SPPLLLADEPTGNLDPDLSERIL-DLLKRLNK 185 (214)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCCh-hhCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 345667777764311110 0111 12344999999999 999999999999 9999999998 88888876
Q ss_pred CCCeEEEEEeccccccccHHHHHHhh
Q 025642 129 RNFNVCAVYLLDSQFITDVTKFISGC 154 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d~~~~~s~~ 154 (250)
++.+++++. |...+...+++.+
T Consensus 186 ~~~tii~~t----H~~~~~~~~~d~i 207 (214)
T TIGR02673 186 RGTTVIVAT----HDLSLVDRVAHRV 207 (214)
T ss_pred cCCEEEEEe----CCHHHHHHhcCEE
Confidence 688876664 6665555555543
No 31
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.89 E-value=4.7e-23 Score=176.40 Aligned_cols=143 Identities=17% Similarity=0.243 Sum_probs=103.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-------CcccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-------~~~~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++++++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 112 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDE 112 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHH
Confidence 578999999999999999999999999999998876421 12333 22345555542
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCC
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~ 131 (250)
+.++++.+|+.+..... ...+ .++++++||++++. +|+++|+|||++ +|+.++..+. +++++++++|.
T Consensus 113 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 187 (218)
T cd03266 113 LTARLEELADRLGMEELLDRR--VGGFSTGMRQKVAIARALVH--DPPVLLLDEPTTGLDVMATRALR-EFIRQLRALGK 187 (218)
T ss_pred HHHHHHHHHHHcCCHHHHhhh--hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHCCC
Confidence 34577788876431111 1111 12334999999999 999999999999 9999999988 88888876688
Q ss_pred eEEEEEeccccccccHHHHHHhhH
Q 025642 132 NVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 132 ~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
+++++. |...+...+++.++
T Consensus 188 tii~~t----H~~~~~~~~~d~i~ 207 (218)
T cd03266 188 CILFST----HIMQEVERLCDRVV 207 (218)
T ss_pred EEEEEe----CCHHHHHHhcCEEE
Confidence 887663 66665566655443
No 32
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=5.8e-23 Score=175.01 Aligned_cols=144 Identities=13% Similarity=0.146 Sum_probs=102.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc---cCCCCC-------CcccChhhhhh---------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---AENFDY-------PVAMDIRELIS--------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~---~~~~~y-------~~~~~i~~~i~--------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| .+..++++++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 107 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARR 107 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHH
Confidence 57999999999999999999999999999999987642 122333 22345555432
Q ss_pred -HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025642 59 -LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (250)
Q Consensus 59 -~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~ 135 (250)
+.++++.+++.+..... ..+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. ++++++++++.++++
T Consensus 108 ~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrl~la~al~~--~p~~lllDEP~~~LD~~~~~~~~-~~l~~~~~~~~tii~ 183 (210)
T cd03269 108 RIDEWLERLELSEYANKR-VEELSKGNQQKVQFIAAVIH--DPELLILDEPFSGLDPVNVELLK-DVIRELARAGKTVIL 183 (210)
T ss_pred HHHHHHHHcCChHHHhCc-HhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEE
Confidence 34566777775421111 11111 12334899999999 999999999999 9999999988 888888766777765
Q ss_pred EEeccccccccHHHHHHhhH
Q 025642 136 VYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 136 v~l~d~~~~~d~~~~~s~~l 155 (250)
+ +|...+...+++.++
T Consensus 184 ~----sH~~~~~~~~~d~i~ 199 (210)
T cd03269 184 S----THQMELVEELCDRVL 199 (210)
T ss_pred E----CCCHHHHHHhhhEEE
Confidence 5 466655555655443
No 33
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.89 E-value=4.5e-23 Score=175.71 Aligned_cols=143 Identities=19% Similarity=0.207 Sum_probs=101.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ++ ..++++.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~ 108 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPE 108 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCH
Confidence 689999999999999999999999999999998865421 23343 11 224444432
Q ss_pred ------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025642 59 ------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (250)
Q Consensus 59 ------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~ 130 (250)
+.++++.+++.+...... .+.. .+++++.||++++. +|+++|+||||+ ||+.++..+. +++++++++|
T Consensus 109 ~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~ 184 (211)
T cd03225 109 EEIEERVEEALELVGLEGLRDRSP-FTLSGGQKQRVAIAGVLAM--DPDILLLDEPTAGLDPAGRRELL-ELLKKLKAEG 184 (211)
T ss_pred HHHHHHHHHHHHHcCcHhhhcCCc-ccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHcC
Confidence 345677788754211110 0111 13344999999999 999999999999 9999999999 8888887667
Q ss_pred CeEEEEEeccccccccHHHHHHhh
Q 025642 131 FNVCAVYLLDSQFITDVTKFISGC 154 (250)
Q Consensus 131 ~~vi~v~l~d~~~~~d~~~~~s~~ 154 (250)
.+++++ +|...+...+++.+
T Consensus 185 ~tvi~~----sH~~~~~~~~~d~i 204 (211)
T cd03225 185 KTIIIV----THDLDLLLELADRV 204 (211)
T ss_pred CEEEEE----eCCHHHHHHhCCEE
Confidence 787655 36666555555543
No 34
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.89 E-value=3.9e-23 Score=192.55 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=115.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-------CcccChhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELI------------ 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-------~~~~~i~~~i------------ 57 (250)
+++|+||||||||||+|+|+|+++|++|+|.+.|.++.. ..++| +...++++.+
T Consensus 31 iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~ 110 (402)
T PRK09536 31 LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFD 110 (402)
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhccccc
Confidence 579999999999999999999999999999999977532 12333 1233444433
Q ss_pred --------hHHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 58 --------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 58 --------~~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
.++++++.+++.+.......--...+++++.||++|+. +|+++|+||||+ ||+.++.+++ ++++++++
T Consensus 111 ~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~--~P~iLLLDEPtsgLD~~~~~~l~-~lL~~l~~ 187 (402)
T PRK09536 111 TWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ--ATPVLLLDEPTASLDINHQVRTL-ELVRRLVD 187 (402)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHh
Confidence 15667888888654221111111223455999999999 999999999999 9999999988 99999987
Q ss_pred CCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCe
Q 025642 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~ 168 (250)
+|.+++++ +|.+.+..++++.+++...+.+....+.
T Consensus 188 ~g~TIIiv----sHdl~~~~~~adrii~l~~G~iv~~G~~ 223 (402)
T PRK09536 188 DGKTAVAA----IHDLDLAARYCDELVLLADGRVRAAGPP 223 (402)
T ss_pred cCCEEEEE----ECCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 78887655 4888888888888777666655444333
No 35
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.89 E-value=4.4e-23 Score=178.22 Aligned_cols=147 Identities=16% Similarity=0.218 Sum_probs=104.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Cc------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| ++ ..++++.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 107 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSK 107 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCH
Confidence 579999999999999999999999999999998875321 22333 22 234554432
Q ss_pred ------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025642 59 ------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (250)
Q Consensus 59 ------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~ 130 (250)
++++++.+++.+...... .+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. ++++++++.+
T Consensus 108 ~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~ 183 (232)
T cd03218 108 KEREEKLEELLEEFHITHLRKSKA-SSLSGGERRRVEIARALAT--NPKFLLLDEPFAGVDPIAVQDIQ-KIIKILKDRG 183 (232)
T ss_pred HHHHHHHHHHHHHcCChhhhhCCh-hhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCC
Confidence 345677777764321110 0111 12344899999999 999999999999 9999999988 8888887668
Q ss_pred CeEEEEEeccccccccHHHHHHhhHHhh
Q 025642 131 FNVCAVYLLDSQFITDVTKFISGCMASL 158 (250)
Q Consensus 131 ~~vi~v~l~d~~~~~d~~~~~s~~l~~~ 158 (250)
.+++++ +|...+...+++.++...
T Consensus 184 ~tii~~----sH~~~~~~~~~d~i~~l~ 207 (232)
T cd03218 184 IGVLIT----DHNVRETLSITDRAYIIY 207 (232)
T ss_pred CEEEEE----eCCHHHHHHhCCEEEEEE
Confidence 887665 366666666666554433
No 36
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.89 E-value=3.1e-23 Score=186.72 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=109.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc------cCCCCC-------CcccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------AENFDY-------PVAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~------~~~~~y-------~~~~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++. ...++| .+..++++.+.
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 111 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTRE 111 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHH
Confidence 58999999999999999999999999999999987642 122333 22345555543
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~v 133 (250)
++++++.+++.+.......--...+++++.||++++. +|+++|+||||+ ||+.++..+. +++++++++|.++
T Consensus 112 ~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g~ti 188 (303)
T TIGR01288 112 IEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSLLARGKTI 188 (303)
T ss_pred HHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEE
Confidence 2345667777643211111011122344999999999 999999999999 9999999988 8888887778888
Q ss_pred EEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 134 CAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
+++ +|...+...+++.++....+.+
T Consensus 189 l~~----sH~~~~~~~~~d~i~~l~~G~i 213 (303)
T TIGR01288 189 LLT----THFMEEAERLCDRLCVLESGRK 213 (303)
T ss_pred EEE----CCCHHHHHHhCCEEEEEECCEE
Confidence 655 5888777778777665544433
No 37
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=5.5e-23 Score=176.49 Aligned_cols=145 Identities=14% Similarity=0.204 Sum_probs=103.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-------CcccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-------~~~~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... +.+.| .+..++++.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 107 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAE 107 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHH
Confidence 589999999999999999999999999999998865421 22333 22334444432
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CC
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NF 131 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~ 131 (250)
+.++++.+++.+..... ..+.. .+++++.||++++. +|+++|+||||+ +|+.++..+. ++++++.++ |.
T Consensus 108 ~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qr~~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~ 183 (220)
T cd03265 108 RRERIDELLDFVGLLEAADRL-VKTYSGGMRRRLEIARSLVH--RPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKEEFGM 183 (220)
T ss_pred HHHHHHHHHHHcCCHHHhhCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhcCC
Confidence 45667788886431111 11111 12344899999999 999999999999 9999999988 888888765 77
Q ss_pred eEEEEEeccccccccHHHHHHhhHH
Q 025642 132 NVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 132 ~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+++++ +|...+...+++.++.
T Consensus 184 tvi~~----tH~~~~~~~~~d~i~~ 204 (220)
T cd03265 184 TILLT----THYMEEAEQLCDRVAI 204 (220)
T ss_pred EEEEE----eCCHHHHHHhCCEEEE
Confidence 87665 3666666666655443
No 38
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=9e-23 Score=175.14 Aligned_cols=144 Identities=17% Similarity=0.135 Sum_probs=102.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--cCCCCC-C------cccChhhhhh----------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-P------VAMDIRELIS---------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--~~~~~y-~------~~~~i~~~i~---------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. .+.+.| + +..++++.+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 111 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARER 111 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 58999999999999999999999999999999887642 123333 1 2234554432
Q ss_pred HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEE
Q 025642 59 LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCA 135 (250)
Q Consensus 59 ~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~vi~ 135 (250)
+.++++.+++.+...... .+.. .+++++.||++++. +|+++|+||||+ +|+.++..+. ++++++.+ .+.++++
T Consensus 112 ~~~~l~~~~l~~~~~~~~-~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~~~tiii 187 (220)
T cd03293 112 AEELLELVGLSGFENAYP-HQLSGGMRQRVALARALAV--DPDVLLLDEPFSALDALTREQLQ-EELLDIWRETGKTVLL 187 (220)
T ss_pred HHHHHHHcCChhhhhCCc-ccCCHHHHHHHHHHHHHHc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEE
Confidence 345677788764311110 1111 12344999999999 999999999999 9999999999 88888754 4778766
Q ss_pred EEeccccccccHHHHHHhhH
Q 025642 136 VYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 136 v~l~d~~~~~d~~~~~s~~l 155 (250)
+. |...+...+++.++
T Consensus 188 ~s----H~~~~~~~~~d~i~ 203 (220)
T cd03293 188 VT----HDIDEAVFLADRVV 203 (220)
T ss_pred Ee----cCHHHHHHhCCEEE
Confidence 53 66665556655444
No 39
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.89 E-value=5.1e-23 Score=178.22 Aligned_cols=146 Identities=17% Similarity=0.194 Sum_probs=103.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Cc------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| ++ ..++++.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~ 107 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSG 107 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccc
Confidence 589999999999999999999999999999998876421 22333 22 234444332
Q ss_pred ----------------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 59 ----------------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 59 ----------------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
+.++++.+|+.+..... ..+.. .+++++.||++++. +|+++|+||||+ +|+.++..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~- 183 (236)
T cd03219 108 LLLARARREEREARERAEELLERVGLADLADRP-AGELSYGQQRRLEIARALAT--DPKLLLLDEPAAGLNPEETEELA- 183 (236)
T ss_pred cccccccccHHHHHHHHHHHHHHcCccchhhCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-
Confidence 34566777776432111 11111 12344999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+++++++++|.+++++ +|...+...+++.++..
T Consensus 184 ~~l~~~~~~~~tii~v----sH~~~~~~~~~d~i~~l 216 (236)
T cd03219 184 ELIRELRERGITVLLV----EHDMDVVMSLADRVTVL 216 (236)
T ss_pred HHHHHHHHCCCEEEEE----ecCHHHHHHhCCEEEEE
Confidence 8888887677887666 37666666666654443
No 40
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=7e-23 Score=173.05 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=119.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------------CCCCCCcccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------------~~~~y~~~~~i~~~i~----------- 58 (250)
+.+|+||||||||||+|.++|.+.|++|++.++|.++.. ++......++++|.+.
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~ 108 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGRE 108 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCC
Confidence 578999999999999999999999999999999987621 1111111234444443
Q ss_pred -------HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCC----CCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYL----DDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 59 -------~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~----~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
.+.+|+..++....+..|..-.-.+++++.+||.|+... ++++|++||||+ ||+..+...+ ++.+++
T Consensus 109 ~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl-~laR~l 187 (259)
T COG4559 109 PEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL-RLARQL 187 (259)
T ss_pred chhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHH-HHHHHH
Confidence 567788888777666555544455677799999998753 345999999999 9999999999 999999
Q ss_pred HhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCC
Q 025642 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (250)
Q Consensus 127 ~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p 167 (250)
.++|..|++|- |++.-...|++++++...+.+....+
T Consensus 188 a~~g~~V~~VL----HDLNLAA~YaDrivll~~Grv~a~g~ 224 (259)
T COG4559 188 AREGGAVLAVL----HDLNLAAQYADRIVLLHQGRVIASGS 224 (259)
T ss_pred HhcCCcEEEEE----ccchHHHHhhheeeeeeCCeEeecCC
Confidence 99888887773 55555678988888777666544433
No 41
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.89 E-value=7.7e-23 Score=174.48 Aligned_cols=142 Identities=17% Similarity=0.208 Sum_probs=100.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC-C------cccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y-~------~~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| + +..++++.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~ 108 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGV 108 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCC
Confidence 579999999999999999999999999999998875421 12333 2 2234554432
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++++++++.+..... ..+.. .+++++.||++++. +|+++|+||||+ +|+.++..+. ++++++++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~ 184 (214)
T cd03292 109 PPREIRKRVPAALELVGLSHKHRAL-PAELSGGEQQRVAIARAIVN--SPTILIADEPTGNLDPDTTWEIM-NLLKKINK 184 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhhCC-hhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHH
Confidence 34567777775432111 01111 12344899999999 999999999999 9999999988 88888876
Q ss_pred CCCeEEEEEeccccccccHHHHHHh
Q 025642 129 RNFNVCAVYLLDSQFITDVTKFISG 153 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d~~~~~s~ 153 (250)
+|.+++++. |.......+++.
T Consensus 185 ~~~tiiivt----H~~~~~~~~~d~ 205 (214)
T cd03292 185 AGTTVVVAT----HAKELVDTTRHR 205 (214)
T ss_pred cCCEEEEEe----CCHHHHHHhCCE
Confidence 678877664 555544445443
No 42
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.7e-23 Score=190.21 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=110.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+.+|++|+|.++|.+.. ...++| .+..++++++.
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~ 111 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEI 111 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHH
Confidence 57999999999999999999999999999999987642 223333 33456666553
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~ 132 (250)
++++++.+|+.+..... ..+.. .++++++||++|+. +|+++|+|||++ ||+.++..+. +.++++.++ |.+
T Consensus 112 ~~~~~~~l~~~gL~~~~~~~-~~~LSgGq~QRvalARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~t 187 (356)
T PRK11650 112 EERVAEAARILELEPLLDRK-PRELSGGQRQRVAMGRAIVR--EPAVFLFDEPLSNLDAKLRVQMR-LEIQRLHRRLKTT 187 (356)
T ss_pred HHHHHHHHHHcCChhHhhCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCE
Confidence 45678888887543211 11111 23445999999999 999999999999 9999999988 778888764 888
Q ss_pred EEEEEeccccccccHHHHHHhhHHhhhhH
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (250)
+++|. |...+...+++.+++...+.
T Consensus 188 ii~vT----Hd~~ea~~l~D~i~vl~~G~ 212 (356)
T PRK11650 188 SLYVT----HDQVEAMTLADRVVVMNGGV 212 (356)
T ss_pred EEEEe----CCHHHHHHhCCEEEEEeCCE
Confidence 87664 66666666666555544433
No 43
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.89 E-value=8.4e-23 Score=173.79 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=103.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----CCCCC-------CcccChhhhhh------------H
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------L 59 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----~~~~y-------~~~~~i~~~i~------------~ 59 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++++.+. +
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 107 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRI 107 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHH
Confidence 579999999999999999999999999999999876521 22333 22345555542 4
Q ss_pred HHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 60 EDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 60 ~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+++++.+++......... +.. .++++++||++++. +|+++|+||||+ ||+.++..+. ++++++++++.+++++
T Consensus 108 ~~~l~~~~l~~~~~~~~~-~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~- 182 (208)
T cd03268 108 DEVLDVVGLKDSAKKKVK-GFSLGMKQRLGIALALLG--NPDLLILDEPTNGLDPDGIKELR-ELILSLRDQGITVLIS- 182 (208)
T ss_pred HHHHHHcCCHHHHhhhHh-hCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEE-
Confidence 556777887643211100 111 12334899999999 999999999999 9999999998 8888887677787655
Q ss_pred eccccccccHHHHHHhhH
Q 025642 138 LLDSQFITDVTKFISGCM 155 (250)
Q Consensus 138 l~d~~~~~d~~~~~s~~l 155 (250)
+|...+...+++.++
T Consensus 183 ---tH~~~~~~~~~d~v~ 197 (208)
T cd03268 183 ---SHLLSEIQKVADRIG 197 (208)
T ss_pred ---cCCHHHHHHhcCEEE
Confidence 466665555555443
No 44
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.89 E-value=7.4e-23 Score=184.12 Aligned_cols=152 Identities=18% Similarity=0.242 Sum_probs=111.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-------CcccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-------~~~~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. +.++| ++..++.+++.
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 109 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQL 109 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 689999999999999999999999999999999976532 22333 22345555543
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~v 133 (250)
++++++.+|+.+........-...+++++.||++++. +|+++|+|||++ ||+.++..+. ++++++++ +.+|
T Consensus 110 ~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~--~p~lliLDEPt~gLD~~~~~~l~-~~l~~~~~-~~ti 185 (301)
T TIGR03522 110 LKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIH--DPKVLILDEPTTGLDPNQLVEIR-NVIKNIGK-DKTI 185 (301)
T ss_pred HHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHhcC-CCEE
Confidence 4556777888764221111111122344899999999 999999999999 9999999988 88888864 6777
Q ss_pred EEEEeccccccccHHHHHHhhHHhhhhHhH
Q 025642 134 CAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (250)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~~ 163 (250)
+++ +|.+.+...+++.++....+.+.
T Consensus 186 ii~----sH~l~~~~~~~d~i~~l~~G~i~ 211 (301)
T TIGR03522 186 ILS----THIMQEVEAICDRVIIINKGKIV 211 (301)
T ss_pred EEE----cCCHHHHHHhCCEEEEEECCEEE
Confidence 544 58888888888877666555443
No 45
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=2.8e-23 Score=178.70 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=114.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc---------------CCCCCCcccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~---------------~~~~y~~~~~i~~~i~---------- 58 (250)
++++||||||||||++++++|+++|++|+|.+.|.|... ++...++.+++-|++-
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~ 111 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLS 111 (250)
T ss_pred EEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhh
Confidence 689999999999999999999999999999999987522 2222245556555443
Q ss_pred ------------------HHHHHHHhCCCCCCCchhh-hhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHH
Q 025642 59 ------------------LEDVMEELGLGPNGGLIYC-MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (250)
Q Consensus 59 ------------------~~~vm~~~~L~~~g~~~~~-~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i 118 (250)
+.++++.+||.+....... +.+-.++. +.||+||+. +|++|++|||.+ +.+....++
T Consensus 112 ~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~-LEIArALa~--~P~lLLLDEPaAGln~~e~~~l 188 (250)
T COG0411 112 GLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRR-LEIARALAT--QPKLLLLDEPAAGLNPEETEEL 188 (250)
T ss_pred hhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHH-HHHHHHHhc--CCCEEEecCccCCCCHHHHHHH
Confidence 4567778888875422211 12222333 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhC-CCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhc
Q 025642 119 LRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (250)
Q Consensus 119 ~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~ 165 (250)
. ++++++++. |.++++|= |.+.-...+++.+.....+.+..+
T Consensus 189 ~-~~i~~i~~~~g~tillIE----HdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 189 A-ELIRELRDRGGVTILLIE----HDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred H-HHHHHHHhcCCcEEEEEE----eccHHHhhhccEEEeccCCcCccc
Confidence 9 999999874 68887663 777766777777666555554333
No 46
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.89 E-value=9.7e-23 Score=173.73 Aligned_cols=143 Identities=19% Similarity=0.220 Sum_probs=101.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc---------cCCCCC-Cc------ccChhhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-PV------AMDIRELIS--------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~---------~~~~~y-~~------~~~i~~~i~--------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| ++ ..++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~ 107 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGM 107 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCC
Confidence 58999999999999999999999999999999987542 123444 22 234444432
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++++.+|+.+..... ..+.. .+.++++||++++. +|+++|+|||++ +|+.++..+. ++++++++
T Consensus 108 ~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~ 183 (213)
T cd03262 108 SKAEAEERALELLEKVGLADKADAY-PAQLSGGQQQRVAIARALAM--NPKVMLFDEPTSALDPELVGEVL-DVMKDLAE 183 (213)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhhC-ccccCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHH
Confidence 34566777776431111 01111 12334999999999 999999999999 9999999988 88988876
Q ss_pred CCCeEEEEEeccccccccHHHHHHhh
Q 025642 129 RNFNVCAVYLLDSQFITDVTKFISGC 154 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d~~~~~s~~ 154 (250)
.|.+++++. |...+...+++.+
T Consensus 184 ~~~tvi~~s----h~~~~~~~~~d~i 205 (213)
T cd03262 184 EGMTMVVVT----HEMGFAREVADRV 205 (213)
T ss_pred cCCEEEEEe----CCHHHHHHhCCEE
Confidence 677876653 6665555555543
No 47
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.89 E-value=6.1e-23 Score=186.91 Aligned_cols=141 Identities=15% Similarity=0.142 Sum_probs=108.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCC-------CCCCcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AEN-------FDYPVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~-------~~y~~~~~i~~~i~------------- 58 (250)
+++++||+||||||++|+|+|+.+|++|+|.++|.+.. .++ .+.+|.++|.++|.
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~ 112 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAE 112 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHH
Confidence 46899999999999999999999999999999997752 233 33377888888864
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCC
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNF 131 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~-~~~~ 131 (250)
++++++.+++++.+.. +..+.. .++++++|||||+. +|+++++|||.+ ||...+.++. .-++++. +.|.
T Consensus 113 i~~rv~e~L~lV~L~~~~~R-~p~qLSGGQqQRVALARAL~~--~P~vLLLDEPlSaLD~kLR~~mr-~Elk~lq~~~gi 188 (352)
T COG3842 113 IKARVEEALELVGLEGFADR-KPHQLSGGQQQRVALARALVP--EPKVLLLDEPLSALDAKLREQMR-KELKELQRELGI 188 (352)
T ss_pred HHHHHHHHHHHcCchhhhhh-ChhhhChHHHHHHHHHHHhhc--CcchhhhcCcccchhHHHHHHHH-HHHHHHHHhcCC
Confidence 6788888999887532 222332 24556999999999 999999999999 9999999987 4455554 5588
Q ss_pred eEEEEEeccccccccHHHHHH
Q 025642 132 NVCAVYLLDSQFITDVTKFIS 152 (250)
Q Consensus 132 ~vi~v~l~d~~~~~d~~~~~s 152 (250)
|.+.|. |.-.+.-...+
T Consensus 189 T~i~VT----HDqeEAl~msD 205 (352)
T COG3842 189 TFVYVT----HDQEEALAMSD 205 (352)
T ss_pred eEEEEE----CCHHHHhhhcc
Confidence 888775 66554444433
No 48
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.89 E-value=2.1e-22 Score=169.19 Aligned_cols=130 Identities=14% Similarity=0.131 Sum_probs=94.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc---------cCCCCC-Ccc-------cChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-PVA-------MDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~---------~~~~~y-~~~-------~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| +++ .++++.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~ 99 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGL 99 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999886642 112333 221 24444432
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++++.+++.+...... .+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. ++++++++
T Consensus 100 ~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~ 175 (190)
T TIGR01166 100 SEAEVERRVREALTAVGASGLRERPT-HCLSGGEKKRVAIAGAVAM--RPDVLLLDEPTAGLDPAGREQML-AILRRLRA 175 (190)
T ss_pred CHHHHHHHHHHHHHHcCchhhhhCCh-hhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHH
Confidence 345667777764321110 1111 23344999999999 999999999999 9999999988 88888877
Q ss_pred CCCeEEEEE
Q 025642 129 RNFNVCAVY 137 (250)
Q Consensus 129 ~~~~vi~v~ 137 (250)
+|.+++++.
T Consensus 176 ~~~tili~s 184 (190)
T TIGR01166 176 EGMTVVIST 184 (190)
T ss_pred cCCEEEEEe
Confidence 788876663
No 49
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.89 E-value=1.6e-22 Score=168.30 Aligned_cols=131 Identities=15% Similarity=0.211 Sum_probs=104.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc---CCCCC--------Cc------ccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY--------PV------AMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~---~~~~y--------~~------~~~i~~~i~-------- 58 (250)
.+.++||+|||||||+|.|.+..+|++|+|.+.|.|... ..+++ +| +.++.|++.
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~ 109 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK 109 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCC
Confidence 467999999999999999999999999999999998743 22332 22 346777665
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
+.++++..||.........--.-.++++++||||+.. +|++||.||||- +||....+++ ++++++++.
T Consensus 110 ~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~--~P~vLlADEPTGNLDp~~s~~im-~lfeeinr~ 186 (223)
T COG2884 110 PPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN--QPAVLLADEPTGNLDPDLSWEIM-RLFEEINRL 186 (223)
T ss_pred CHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc--CCCeEeecCCCCCCChHHHHHHH-HHHHHHhhc
Confidence 7788899999876421111112224566999999999 999999999999 9999999999 999999999
Q ss_pred CCeEEEEE
Q 025642 130 NFNVCAVY 137 (250)
Q Consensus 130 ~~~vi~v~ 137 (250)
|.||++..
T Consensus 187 GtTVl~AT 194 (223)
T COG2884 187 GTTVLMAT 194 (223)
T ss_pred CcEEEEEe
Confidence 99987654
No 50
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.89 E-value=1.3e-22 Score=175.73 Aligned_cols=151 Identities=14% Similarity=0.083 Sum_probs=105.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccC--CCCC-------CcccChhhhhh----------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--NFDY-------PVAMDIRELIS---------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~--~~~y-------~~~~~i~~~i~---------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+.... ...| .+..++.+++.
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~ 92 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERR 92 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHHH
Confidence 5899999999999999999999999999999988764211 0112 12234444432
Q ss_pred --HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeE
Q 025642 59 --LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNV 133 (250)
Q Consensus 59 --~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~v 133 (250)
+.++++.+++....... ..+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++++ |.++
T Consensus 93 ~~~~~~l~~~~l~~~~~~~-~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~~~~ti 168 (230)
T TIGR01184 93 AIVEEHIALVGLTEAADKR-PGQLSGGMKQRVAIARALSI--RPKVLLLDEPFGALDALTRGNLQ-EELMQIWEEHRVTV 168 (230)
T ss_pred HHHHHHHHHcCCHHHHcCC-hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence 34556777775421110 01111 12344999999999 999999999999 9999999999 888887654 7887
Q ss_pred EEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 134 CAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
+++ +|...+...+++.++....+.+
T Consensus 169 i~~----sH~~~~~~~~~d~v~~l~~G~i 193 (230)
T TIGR01184 169 LMV----THDVDEALLLSDRVVMLTNGPA 193 (230)
T ss_pred EEE----eCCHHHHHHhcCEEEEEeCCcE
Confidence 666 4777666677776655544443
No 51
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.9e-23 Score=178.15 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=104.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC-C------cccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y-~------~~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| + +..++.+.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 112 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGV 112 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCC
Confidence 589999999999999999999999999999999876421 22333 2 2235555442
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++++.+++.+...... .+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. ++++++++
T Consensus 113 ~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~ 188 (233)
T cd03258 113 PKAEIEERVLELLELVGLEDKADAYP-AQLSGGQKQRVGIARALAN--NPKVLLCDEATSALDPETTQSIL-ALLRDINR 188 (233)
T ss_pred CHHHHHHHHHHHHHHCCChhhhhcCh-hhCCHHHHHHHHHHHHHhc--CCCEEEecCCCCcCCHHHHHHHH-HHHHHHHH
Confidence 345677788764321110 1111 12344999999999 999999999999 9999999998 88888876
Q ss_pred C-CCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 129 R-NFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 129 ~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+ |.+++++. |.......+++.++..
T Consensus 189 ~~~~tvii~s----H~~~~~~~~~d~i~~l 214 (233)
T cd03258 189 ELGLTIVLIT----HEMEVVKRICDRVAVM 214 (233)
T ss_pred HcCCEEEEEe----CCHHHHHHhCCEEEEE
Confidence 4 78886663 6666555665554443
No 52
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.8e-23 Score=185.29 Aligned_cols=152 Identities=20% Similarity=0.171 Sum_probs=109.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-------------------------------cCCCCC-Ccc-
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------------------------AENFDY-PVA- 50 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-------------------------------~~~~~y-~~~- 50 (250)
.++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...++| +++
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~ 114 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFA 114 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCc
Confidence 58999999999999999999999999999999865421 112344 221
Q ss_pred ------cChhhhhh----------------HHHHHHHhCCCC-CCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeC
Q 025642 51 ------MDIRELIS----------------LEDVMEELGLGP-NGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDC 106 (250)
Q Consensus 51 ------~~i~~~i~----------------~~~vm~~~~L~~-~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDE 106 (250)
.++++.+. +.++++.+|+.+ .... ...... .++++++||++|+. +|+++|+||
T Consensus 115 ~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~~LSgGqkqrvalA~aL~~--~P~lLlLDE 191 (305)
T PRK13651 115 EYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR-SPFELSGGQKRRVALAGILAM--EPDFLVFDE 191 (305)
T ss_pred ccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC-ChhhCCHHHHHHHHHHHHHHh--CCCEEEEeC
Confidence 24544442 567788888863 2111 111111 22344999999999 999999999
Q ss_pred CCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhH
Q 025642 107 PGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (250)
Q Consensus 107 Pt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~ 163 (250)
||+ +|+.++..++ ++++++++.|.+|+++. |.......+++.++....+.+.
T Consensus 192 Pt~~LD~~~~~~l~-~~l~~l~~~g~tiiivt----Hd~~~~~~~adrv~vl~~G~i~ 244 (305)
T PRK13651 192 PTAGLDPQGVKEIL-EIFDNLNKQGKTIILVT----HDLDNVLEWTKRTIFFKDGKII 244 (305)
T ss_pred CCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEe----eCHHHHHHhCCEEEEEECCEEE
Confidence 999 9999999988 89999877788887664 7777667777776665555443
No 53
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.89 E-value=5e-23 Score=186.55 Aligned_cols=131 Identities=20% Similarity=0.147 Sum_probs=101.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC-----ccC-------CCCCCcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AAE-------NFDYPVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp-----~~~-------~~~y~~~~~i~~~i~------------- 58 (250)
.++++|||||||||++|+|+|+.+|++|+|.+.|.+. ..+ +.+..|.++|++++.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei 110 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEI 110 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHH
Confidence 4689999999999999999999999999999988664 333 334467888998886
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeE
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~v 133 (250)
++++.+.+++.+.......--.-.+++++++||||.. +|++++||||.+ ||...+..+. .-++++.+ .|.|+
T Consensus 111 ~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr--~P~v~L~DEPlSnLDa~lR~~mr-~ei~~lh~~l~~T~ 187 (338)
T COG3839 111 DKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR--KPKVFLLDEPLSNLDAKLRVLMR-SEIKKLHERLGTTT 187 (338)
T ss_pred HHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc--CCCEEEecCchhHhhHHHHHHHH-HHHHHHHHhcCCcE
Confidence 6788888888875311111011123456999999999 999999999999 9999998877 66677765 48888
Q ss_pred EEEE
Q 025642 134 CAVY 137 (250)
Q Consensus 134 i~v~ 137 (250)
+.|.
T Consensus 188 IYVT 191 (338)
T COG3839 188 IYVT 191 (338)
T ss_pred EEEc
Confidence 7775
No 54
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.89 E-value=1.5e-22 Score=174.79 Aligned_cols=143 Identities=16% Similarity=0.033 Sum_probs=101.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--CCCCCCcccChhhhhh----------------HHHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS----------------LEDVMEE 65 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--~~~~y~~~~~i~~~i~----------------~~~vm~~ 65 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ....+.+..++++++. +.++++.
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 129 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEF 129 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999876431 1233344455555432 3445666
Q ss_pred hCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccc
Q 025642 66 LGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF 143 (250)
Q Consensus 66 ~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~ 143 (250)
+++.+...... .+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. ++++++++++.+++++. |.
T Consensus 130 ~~l~~~~~~~~-~~LSgG~~qrv~laral~~--~p~llllDEP~~gLD~~~~~~~~-~~l~~~~~~~~tiii~s----H~ 201 (224)
T cd03220 130 SELGDFIDLPV-KTYSSGMKARLAFAIATAL--EPDILLIDEVLAVGDAAFQEKCQ-RRLRELLKQGKTVILVS----HD 201 (224)
T ss_pred cCChhhhhCCh-hhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEe----CC
Confidence 77755321111 1111 12334899999999 999999999999 9999999988 88888876677876663 66
Q ss_pred cccHHHHHHhh
Q 025642 144 ITDVTKFISGC 154 (250)
Q Consensus 144 ~~d~~~~~s~~ 154 (250)
..+...+++.+
T Consensus 202 ~~~~~~~~d~i 212 (224)
T cd03220 202 PSSIKRLCDRA 212 (224)
T ss_pred HHHHHHhCCEE
Confidence 65555555543
No 55
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.5e-23 Score=188.23 Aligned_cols=151 Identities=13% Similarity=0.169 Sum_probs=110.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC-C------cccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y-~------~~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..++| + +..++++++.
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~ 112 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGT 112 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCC
Confidence 589999999999999999999999999999999876531 23444 2 2345555543
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++++.+|+.+..... ..+.. .+++++.||++|+. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 113 ~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSgGq~qRv~lAraL~~--~p~iLlLDEPts~LD~~~~~~l~-~~L~~l~~ 188 (343)
T PRK11153 113 PKAEIKARVTELLELVGLSDKADRY-PAQLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTRSIL-ELLKDINR 188 (343)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCC-hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34567788886532111 11111 23345999999999 999999999999 9999999999 88888875
Q ss_pred C-CCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 129 ~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
+ |.+++++ +|.+.+...+++.++....+.+
T Consensus 189 ~~g~tiilv----tH~~~~i~~~~d~v~~l~~G~i 219 (343)
T PRK11153 189 ELGLTIVLI----THEMDVVKRICDRVAVIDAGRL 219 (343)
T ss_pred hcCCEEEEE----eCCHHHHHHhCCEEEEEECCEE
Confidence 4 7888766 4777777777777666555444
No 56
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.5e-23 Score=183.91 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=109.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-Ccc-------cChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PVA-------MDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-~~~-------~~i~~~i~------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +++ .++.+.+.
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~ 113 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF 113 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc
Confidence 589999999999999999999999999999999976421 12333 221 24444432
Q ss_pred ----------HHHHHHHhCCCC-CC-CchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025642 59 ----------LEDVMEELGLGP-NG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (250)
Q Consensus 59 ----------~~~vm~~~~L~~-~g-~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~ 125 (250)
+.++++.+++.+ .. .....+ ...++++++||++|+. +|+++|+||||+ +|+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L-SgGqkqrvaiA~aL~~--~p~illLDEPt~gLD~~~~~~l~-~~l~~ 189 (288)
T PRK13643 114 GIPKEKAEKIAAEKLEMVGLADEFWEKSPFEL-SGGQMRRVAIAGILAM--EPEVLVLDEPTAGLDPKARIEMM-QLFES 189 (288)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhccCCcccC-CHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHH-HHHHH
Confidence 455677778853 21 111111 1123344999999999 999999999999 9999999988 88999
Q ss_pred HHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHh
Q 025642 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (250)
Q Consensus 126 l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~ 164 (250)
++++|.+|+++ +|.+.+...+++.++....+.+..
T Consensus 190 l~~~g~til~v----tHd~~~~~~~~dri~~l~~G~i~~ 224 (288)
T PRK13643 190 IHQSGQTVVLV----THLMDDVADYADYVYLLEKGHIIS 224 (288)
T ss_pred HHHCCCEEEEE----ecCHHHHHHhCCEEEEEECCEEEE
Confidence 87778888766 477776677777666655554443
No 57
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.89 E-value=1.9e-22 Score=172.05 Aligned_cols=143 Identities=14% Similarity=0.083 Sum_probs=100.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----CCCCC-C------cccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-P------VAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----~~~~y-~------~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| + +..++++.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 107 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEI 107 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHH
Confidence 579999999999999999999999999999998876421 12333 2 2235555442
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeE
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~v 133 (250)
+.++++.+|+.+........-...+++++.||++++. +|+++|+|||++ +|+.++..+. ++++++++ .+.++
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tv 184 (213)
T cd03301 108 DERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVR--EPKVFLMDEPLSNLDAKLRVQMR-AELKRLQQRLGTTT 184 (213)
T ss_pred HHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEE
Confidence 3456777777543111100011112344899999999 999999999999 9999999999 88888875 47887
Q ss_pred EEEEeccccccccHHHHHHh
Q 025642 134 CAVYLLDSQFITDVTKFISG 153 (250)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s~ 153 (250)
+++. |...+...+++.
T Consensus 185 i~~s----H~~~~~~~~~d~ 200 (213)
T cd03301 185 IYVT----HDQVEAMTMADR 200 (213)
T ss_pred EEEe----CCHHHHHHhcCe
Confidence 6663 555544455443
No 58
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=7.9e-23 Score=181.62 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=108.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-------cChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-------MDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-------~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| +++ .++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~ 112 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDK 112 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCH
Confidence 589999999999999999999999999999999976421 22444 221 24444442
Q ss_pred ------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025642 59 ------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (250)
Q Consensus 59 ------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~ 130 (250)
+.++++.+|+.+..... ..+.. .+++++.||++|+. +|+++|+||||+ +|+.++..+. +++++++++|
T Consensus 113 ~~~~~~~~~~l~~~~L~~~~~~~-~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g 188 (274)
T PRK13647 113 DEVERRVEEALKAVRMWDFRDKP-PYHLSYGQKKRVAIAGVLAM--DPDVIVLDEPMAYLDPRGQETLM-EILDRLHNQG 188 (274)
T ss_pred HHHHHHHHHHHHHCCCHHHhcCC-hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCC
Confidence 34567777876432111 11111 12344999999999 999999999999 9999999998 8998887668
Q ss_pred CeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 131 ~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
.+++++ +|.+....++++.++....+.+
T Consensus 189 ~tili~----tH~~~~~~~~~d~i~~l~~G~i 216 (274)
T PRK13647 189 KTVIVA----THDVDLAAEWADQVIVLKEGRV 216 (274)
T ss_pred CEEEEE----eCCHHHHHHhCCEEEEEECCEE
Confidence 888766 4777766677776655544433
No 59
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=9e-23 Score=177.34 Aligned_cols=144 Identities=14% Similarity=0.138 Sum_probs=101.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----CCCCC-C------cccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-P------VAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----~~~~y-~------~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| + +..++.+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 109 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPP 109 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCC
Confidence 589999999999999999999999999999999876421 22333 1 1234444332
Q ss_pred -------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 -------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 -------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
++++++.+++.+..... ..+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++++
T Consensus 110 ~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~ 185 (239)
T cd03296 110 EAEIRAKVHELLKLVQLDWLADRY-PAQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RWLRRLHDE 185 (239)
T ss_pred HHHHHHHHHHHHHHcCChhhhhcC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHH
Confidence 34556777775432111 01111 12344999999999 999999999999 9999999998 888888764
Q ss_pred -CCeEEEEEeccccccccHHHHHHhhH
Q 025642 130 -NFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 130 -~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
|.+++++. |...+...+++.++
T Consensus 186 ~~~tvii~s----H~~~~~~~~~d~i~ 208 (239)
T cd03296 186 LHVTTVFVT----HDQEEALEVADRVV 208 (239)
T ss_pred cCCEEEEEe----CCHHHHHHhCCEEE
Confidence 78876663 66655555555443
No 60
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.5e-22 Score=172.69 Aligned_cols=145 Identities=19% Similarity=0.215 Sum_probs=102.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----CCCCC-C------cccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-P------VAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----~~~~y-~------~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| + +..++++++.
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~ 105 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAED 105 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCccHHH
Confidence 589999999999999999999999999999998876421 12333 1 2234444432
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~ 132 (250)
+.++++.+++.+...... .+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. ++++++++ .+.+
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~ia~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~t 181 (211)
T cd03298 106 RQAIEVALARVGLAGLEKRLP-GELSGGERQRVALARVLVR--DKPVLLLDEPFAALDPALRAEML-DLVLDLHAETKMT 181 (211)
T ss_pred HHHHHHHHHHcCCHHHHhCCc-ccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCE
Confidence 445677778764321110 0111 12334999999999 999999999999 9999999998 88888865 4788
Q ss_pred EEEEEeccccccccHHHHHHhhHH
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++. |...+...+++.++.
T Consensus 182 ii~~s----H~~~~~~~~~d~i~~ 201 (211)
T cd03298 182 VLMVT----HQPEDAKRLAQRVVF 201 (211)
T ss_pred EEEEe----cCHHHHHhhhCEEEE
Confidence 87664 666655566555443
No 61
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=8.6e-23 Score=182.55 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=109.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc---------CCCCC-Cc-------ccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~---------~~~~y-~~-------~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..++| ++ ..++++.+.
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~ 114 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL 114 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCC
Confidence 589999999999999999999999999999999976521 22444 22 124555442
Q ss_pred --------HHHHHHHhCCC--CCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 59 --------LEDVMEELGLG--PNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 59 --------~~~vm~~~~L~--~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
+.++++.+|+. ...... ..+.. .+++++.||++|+. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 115 ~~~~~~~~~~~~l~~~gL~~~~~~~~~-~~~LSgGq~qrv~iAraL~~--~P~llllDEPt~gLD~~~~~~l~-~~l~~l 190 (287)
T PRK13637 115 SEEEIENRVKRAMNIVGLDYEDYKDKS-PFELSGGQKRRVAIAGVVAM--EPKILILDEPTAGLDPKGRDEIL-NKIKEL 190 (287)
T ss_pred CHHHHHHHHHHHHHHcCCCchhhccCC-cccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCCHHHHHHHH-HHHHHH
Confidence 45678888886 211111 11111 23344999999999 999999999999 9999999999 999998
Q ss_pred HhC-CCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 127 KSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 127 ~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
+++ |.+|+++. |...+...+++.++....+.+
T Consensus 191 ~~~~g~tvi~vt----Hd~~~~~~~~drv~~l~~G~i 223 (287)
T PRK13637 191 HKEYNMTIILVS----HSMEDVAKLADRIIVMNKGKC 223 (287)
T ss_pred HHhcCCEEEEEe----CCHHHHHHhCCEEEEEECCEE
Confidence 764 88887664 777666667776655544443
No 62
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.88 E-value=4.4e-22 Score=168.94 Aligned_cols=143 Identities=15% Similarity=0.084 Sum_probs=102.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-------CcccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-------~~~~~i~~~i~----------~~ 60 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++.+. ++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 107 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVE 107 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHH
Confidence 589999999999999999999999999999998876521 12333 12345665543 56
Q ss_pred HHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 025642 61 DVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (250)
Q Consensus 61 ~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l 138 (250)
++++.+++.+..... ..+.. .+++++.+|++++. +|+++|+|||++ +|+.++..+. +++++++++|.+++++.
T Consensus 108 ~~l~~~~l~~~~~~~-~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~s- 182 (201)
T cd03231 108 EALARVGLNGFEDRP-VAQLSAGQQRRVALARLLLS--GRPLWILDEPTTALDKAGVARFA-EAMAGHCARGGMVVLTT- 182 (201)
T ss_pred HHHHHcCChhhhcCc-hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEe-
Confidence 677888886432111 11111 13344899999999 999999999999 9999999998 88888876677876553
Q ss_pred ccccccccHHHHHHhh
Q 025642 139 LDSQFITDVTKFISGC 154 (250)
Q Consensus 139 ~d~~~~~d~~~~~s~~ 154 (250)
|...+...+++.+
T Consensus 183 ---H~~~~~~~~~~~~ 195 (201)
T cd03231 183 ---HQDLGLSEAGARE 195 (201)
T ss_pred ---cCchhhhhcccee
Confidence 5554444455544
No 63
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=7.3e-23 Score=182.97 Aligned_cols=152 Identities=13% Similarity=0.116 Sum_probs=109.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-Ccc-------cChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PVA-------MDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-~~~-------~~i~~~i~------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| +++ .++.+++.
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~ 114 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF 114 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc
Confidence 589999999999999999999999999999999976421 23444 221 24444442
Q ss_pred ----------HHHHHHHhCCC-CCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 59 ----------LEDVMEELGLG-PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 59 ----------~~~vm~~~~L~-~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
++++++.+|+. .........-...+++++.||++++. +|+++|+|||++ +|+.++..+. ++++++
T Consensus 115 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~--~p~lLlLDEPt~gLD~~~~~~l~-~~l~~l 191 (287)
T PRK13641 115 GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAY--EPEILCLDEPAAGLDPEGRKEMM-QLFKDY 191 (287)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHH
Confidence 45667778885 22111101011123344999999999 999999999999 9999999988 888988
Q ss_pred HhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 127 ~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
++.|.+++++ +|...+...+++.++....+.+
T Consensus 192 ~~~g~tvliv----sH~~~~~~~~~d~v~~l~~G~i 223 (287)
T PRK13641 192 QKAGHTVILV----THNMDDVAEYADDVLVLEHGKL 223 (287)
T ss_pred HhCCCEEEEE----eCCHHHHHHhCCEEEEEECCEE
Confidence 7678888666 4777777777777666554444
No 64
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.6e-22 Score=175.63 Aligned_cols=146 Identities=13% Similarity=0.149 Sum_probs=103.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--CCCCC-------CcccChhhhhh----------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-------PVAMDIRELIS---------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--~~~~y-------~~~~~i~~~i~---------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 108 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEI 108 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHH
Confidence 689999999999999999999999999999998876421 12222 12234444432
Q ss_pred HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEE
Q 025642 59 LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCA 135 (250)
Q Consensus 59 ~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~vi~ 135 (250)
+.++++.+++.+..... ..+.. .+++++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .|.++++
T Consensus 109 ~~~~l~~~gl~~~~~~~-~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tvii 184 (255)
T PRK11248 109 AHQMLKKVGLEGAEKRY-IWQLSGGQRQRVGIARALAA--NPQLLLLDEPFGALDAFTREQMQ-TLLLKLWQETGKQVLL 184 (255)
T ss_pred HHHHHHHcCChhHhhCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEE
Confidence 45667788876432111 11111 12344999999999 999999999999 9999999988 88888854 5788866
Q ss_pred EEeccccccccHHHHHHhhHHh
Q 025642 136 VYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 136 v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+. |.......+++.++..
T Consensus 185 vs----H~~~~~~~~~d~i~~l 202 (255)
T PRK11248 185 IT----HDIEEAVFMATELVLL 202 (255)
T ss_pred Ee----CCHHHHHHhCCEEEEE
Confidence 64 6666666666655443
No 65
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=8.1e-23 Score=181.02 Aligned_cols=146 Identities=18% Similarity=0.138 Sum_probs=104.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-C------cccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P------VAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-~------~~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| + +..++++.+.
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 131 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQG 131 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcC
Confidence 689999999999999999999999999999998865421 22333 2 2345555442
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+++.+...... .+.. .+++++.||++++. +|+++|+||||+ ||+.++..+. ++++++.
T Consensus 132 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~Gq~qrv~lAral~~--~p~illLDEPt~~LD~~~~~~l~-~~l~~~~ 207 (269)
T cd03294 132 VPRAEREERAAEALELVGLEGWEHKYP-DELSGGMQQRVGLARALAV--DPDILLMDEAFSALDPLIRREMQ-DELLRLQ 207 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhCCc-ccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHH
Confidence 345677788864321110 0111 23344999999999 999999999999 9999999998 8888886
Q ss_pred hC-CCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 128 ~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++ |.+++++ +|...+...+++.++..
T Consensus 208 ~~~g~tiii~----tH~~~~~~~~~d~v~~l 234 (269)
T cd03294 208 AELQKTIVFI----THDLDEALRLGDRIAIM 234 (269)
T ss_pred HhcCCEEEEE----eCCHHHHHHhcCEEEEE
Confidence 54 7787655 46666656666554433
No 66
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.88 E-value=1.2e-22 Score=186.67 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=110.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+.+|++|+|.++|.+.. .+.+.| ++..++++++.
T Consensus 32 ~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~ 111 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEV 111 (353)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHH
Confidence 57999999999999999999999999999999987642 223333 34456666554
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~ 132 (250)
++++++.+++.+..... ..+.. .++++++||++|+. +|+++++|||++ ||..++..+. +.++++.++ |.+
T Consensus 112 ~~~~~~~l~~l~L~~~~~~~-~~~LSgGq~QRvaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~~~t 187 (353)
T TIGR03265 112 AERVAELLDLVGLPGSERKY-PGQLSGGQQQRVALARALAT--SPGLLLLDEPLSALDARVREHLR-TEIRQLQRRLGVT 187 (353)
T ss_pred HHHHHHHHHHcCCCchhhCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCE
Confidence 56678888987643211 11222 23445999999999 999999999999 9999999988 777777654 888
Q ss_pred EEEEEeccccccccHHHHHHhhHHhhhhH
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (250)
+++|. |...+...+++.++....+.
T Consensus 188 vi~vT----Hd~~ea~~l~d~i~vl~~G~ 212 (353)
T TIGR03265 188 TIMVT----HDQEEALSMADRIVVMNHGV 212 (353)
T ss_pred EEEEc----CCHHHHHHhCCEEEEEECCE
Confidence 87664 77766666666555544443
No 67
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=1.3e-22 Score=176.25 Aligned_cols=147 Identities=18% Similarity=0.195 Sum_probs=104.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc---------CCCCC-C------cccChhhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-P------VAMDIRELIS--------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~---------~~~~y-~------~~~~i~~~i~--------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... +.+.| + +..++++.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 108 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGA 108 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCC
Confidence 589999999999999999999999999999999876421 12333 2 2234444332
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
+.++++.+|+.+........-...+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++++
T Consensus 109 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~ 185 (240)
T PRK09493 109 SKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV--KPKLMLFDEPTSALDPELRHEVL-KVMQDLAEE 185 (240)
T ss_pred CHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHc
Confidence 3456777887643211100011112334999999999 999999999999 9999999988 888888766
Q ss_pred CCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 130 NFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 130 ~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+.+++++ +|...+...+++.++..
T Consensus 186 ~~tiii~----sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 186 GMTMVIV----THEIGFAEKVASRLIFI 209 (240)
T ss_pred CCEEEEE----eCCHHHHHHhCCEEEEE
Confidence 8887665 47766666666654443
No 68
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=8.7e-23 Score=170.83 Aligned_cols=159 Identities=21% Similarity=0.319 Sum_probs=114.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------------------------------CCCCCCc-cc
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------------------------ENFDYPV-AM 51 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------------------------------~~~~y~~-~~ 51 (250)
+..+|||||||||||+.+++.+++.++|+|.++|++... ..+||.+ ..
T Consensus 29 iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRl 108 (252)
T COG4604 29 ITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRL 108 (252)
T ss_pred eeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCC
Confidence 578999999999999999999999999999999988632 1123311 12
Q ss_pred ChhhhhhHHHHHHHhCCCCCCCchhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 52 DIRELISLEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 52 ~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+-.+...+.++++.++|.+....- ++.+. ++++..+|..++. +.+|++||||-+ ||.....++| ++++++.+
T Consensus 109 t~eD~~~I~~aieyl~L~~l~dry--Ld~LSGGQrQRAfIAMVlaQ--dTdyvlLDEPLNNLDmkHsv~iM-k~Lrrla~ 183 (252)
T COG4604 109 TKEDRRIINEAIEYLHLEDLSDRY--LDELSGGQRQRAFIAMVLAQ--DTDYVLLDEPLNNLDMKHSVQIM-KILRRLAD 183 (252)
T ss_pred chHHHHHHHHHHHHhcccchHHHh--HHhcccchhhhhhhheeeec--cCcEEEecCcccccchHHHHHHH-HHHHHHHH
Confidence 333333488899999988753111 22222 2344889999999 999999999999 9999999999 99999986
Q ss_pred C-CCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeee
Q 025642 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (250)
Q Consensus 129 ~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~v 171 (250)
+ |+++++| ++|..+ .+.|.+.+.....+++....|.-.|
T Consensus 184 el~KtiviV-lHDINf---AS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 184 ELGKTIVVV-LHDINF---ASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred HhCCeEEEE-EecccH---HHhhhhheeeecCCEEEecCCHHHh
Confidence 5 8998777 445444 4566665555666655544444333
No 69
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.88 E-value=1.1e-22 Score=187.45 Aligned_cols=151 Identities=17% Similarity=0.144 Sum_probs=111.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----------cCCCCC-------CcccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----------~~~~~y-------~~~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...++| .+..++++++.
T Consensus 21 i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~ 100 (363)
T TIGR01186 21 IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLG 100 (363)
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcC
Confidence 57999999999999999999999999999999997653 223444 33456776654
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+||...... +..+... ++++++||++|+. +|+++|+|||++ ||+.++..+. +++.+++
T Consensus 101 ~~~~~~~~~~~~~l~~vgL~~~~~~-~p~~LSGGq~QRV~lARAL~~--~p~iLLlDEP~saLD~~~r~~l~-~~l~~l~ 176 (363)
T TIGR01186 101 WPEQERKEKALELLKLVGLEEYEHR-YPDELSGGMQQRVGLARALAA--EPDILLMDEAFSALDPLIRDSMQ-DELKKLQ 176 (363)
T ss_pred CCHHHHHHHHHHHHHhcCCchhhhC-ChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 4567788888653211 1112221 3345999999999 999999999999 9999999988 8888886
Q ss_pred hC-CCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 128 ~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
++ +.|++++. |.+.+..++++.++....+.+
T Consensus 177 ~~~~~Tii~vT----Hd~~ea~~~~drI~vl~~G~i 208 (363)
T TIGR01186 177 ATLQKTIVFIT----HDLDEAIRIGDRIVIMKAGEI 208 (363)
T ss_pred HhcCCEEEEEe----CCHHHHHHhCCEEEEEeCCEE
Confidence 54 88887664 777666777776655544443
No 70
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.88 E-value=2e-22 Score=172.81 Aligned_cols=144 Identities=15% Similarity=0.180 Sum_probs=101.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-C------cccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-P------VAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-~------~~~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| + +..++++++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 109 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSE 109 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHH
Confidence 589999999999999999999999999999998876421 12333 1 2334554432
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~ 132 (250)
+.++++.+++.+...... .+.. .+.++++||++++. +|+++|+|||++ +|+.++..+. ++++++++ +.+
T Consensus 110 ~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~t 184 (220)
T cd03263 110 IKEEVELLLRVLGLTDKANKRA-RTLSGGMKRKLSLAIALIG--GPSVLLLDEPTSGLDPASRRAIW-DLILEVRK-GRS 184 (220)
T ss_pred HHHHHHHHHHHcCCHHHHhChh-hhCCHHHHHHHHHHHHHhc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHHhc-CCE
Confidence 345677778764311110 1111 22344999999999 999999999999 9999999988 88888865 567
Q ss_pred EEEEEeccccccccHHHHHHhhHH
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++ +|.......+++.++.
T Consensus 185 ii~~----sH~~~~~~~~~d~i~~ 204 (220)
T cd03263 185 IILT----THSMDEAEALCDRIAI 204 (220)
T ss_pred EEEE----cCCHHHHHHhcCEEEE
Confidence 7655 4666655566554443
No 71
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=5.5e-22 Score=171.77 Aligned_cols=136 Identities=14% Similarity=0.135 Sum_probs=99.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-Cc------ccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV------AMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-~~------~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 116 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK 116 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999999999999999999876421 23444 22 245655542
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+|+.+...... .+.. .+++++.||++++. +|+++|+||||+ +|+.++..+. +++++++
T Consensus 117 ~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~ 192 (233)
T PRK11629 117 KKPAEINSRALEMLAAVGLEHRANHRP-SELSGGERQRVAIARALVN--NPRLVLADEPTGNLDARNADSIF-QLLGELN 192 (233)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCCh-hhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHH
Confidence 346677888865321111 1111 22344999999999 999999999999 9999999988 8888886
Q ss_pred h-CCCeEEEEEeccccccccH
Q 025642 128 S-RNFNVCAVYLLDSQFITDV 147 (250)
Q Consensus 128 ~-~~~~vi~v~l~d~~~~~d~ 147 (250)
+ .|.+++++. |.....
T Consensus 193 ~~~g~tvii~s----H~~~~~ 209 (233)
T PRK11629 193 RLQGTAFLVVT----HDLQLA 209 (233)
T ss_pred HhCCCEEEEEe----CCHHHH
Confidence 5 478887664 555433
No 72
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.3e-22 Score=174.52 Aligned_cols=145 Identities=15% Similarity=0.161 Sum_probs=102.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC-C------cccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y-~------~~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++++.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 108 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRS 108 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccch
Confidence 689999999999999999999999999999999876421 22333 2 2234544432
Q ss_pred ----------------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 59 ----------------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 59 ----------------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
+.++++.+++.+...... .+.. .+++++.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~- 184 (241)
T cd03256 109 TWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-DQLSGGQQQRVAIARALMQ--QPKLILADEPVASLDPASSRQVM- 184 (241)
T ss_pred hhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-ccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-
Confidence 334566777754211110 0111 23344999999999 999999999999 9999999998
Q ss_pred HHHHHHHh-CCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 121 NFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 121 ~ll~~l~~-~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++++++ .|.+++++ +|.......+++.++.
T Consensus 185 ~~l~~~~~~~~~tii~~----tH~~~~~~~~~d~v~~ 217 (241)
T cd03256 185 DLLKRINREEGITVIVS----LHQVDLAREYADRIVG 217 (241)
T ss_pred HHHHHHHHhcCCEEEEE----eCCHHHHHHhCCEEEE
Confidence 88888865 47887665 3666665666554443
No 73
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.4e-22 Score=171.81 Aligned_cols=144 Identities=16% Similarity=0.189 Sum_probs=101.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----------cCCCCC-C------cccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-P------VAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----------~~~~~y-~------~~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| + +..++.+.+.
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKR 104 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCC
Confidence 57999999999999999999999999999999886542 112333 2 2234554432
Q ss_pred -------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 -------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 -------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
+.++++.+++....... ..+.. .+++++.||++++. +|+++|+||||+ +|+.++..+. +++++++++
T Consensus 105 ~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~ 180 (214)
T cd03297 105 NREDRISVDELLDLLGLDHLLNRY-PAQLSGGEKQRVALARALAA--QPELLLLDEPFSALDRALRLQLL-PELKQIKKN 180 (214)
T ss_pred HHHHHHHHHHHHHHcCCHhHhhcC-cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHH
Confidence 34567778876421110 01111 12344999999999 999999999999 9999999988 888888764
Q ss_pred -CCeEEEEEeccccccccHHHHHHhhH
Q 025642 130 -NFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 130 -~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
|.+++++ +|.......+++.++
T Consensus 181 ~~~tiii~----sH~~~~~~~~~d~i~ 203 (214)
T cd03297 181 LNIPVIFV----THDLSEAEYLADRIV 203 (214)
T ss_pred cCcEEEEE----ecCHHHHHHhcCEEE
Confidence 7777655 366655555555443
No 74
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.88 E-value=2.5e-22 Score=171.42 Aligned_cols=144 Identities=18% Similarity=0.330 Sum_probs=100.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--cCCCCC-Cc--------ccChhhhhh--------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-PV--------AMDIRELIS-------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--~~~~~y-~~--------~~~i~~~i~-------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++. ...+.| ++ ..++++++.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 106 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLS 106 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCC
Confidence 58999999999999999999999999999999886541 112222 11 123333321
Q ss_pred ------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025642 59 ------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (250)
Q Consensus 59 ------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~ 130 (250)
++++++.+++.+...... .+.. .+++++.||++++. +|+++|+||||+ ||+.++..+. +++++++++|
T Consensus 107 ~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~ 182 (213)
T cd03235 107 KADKAKVDEALERVGLSELADRQI-GELSGGQQQRVLLARALVQ--DPDLLLLDEPFAGVDPKTQEDIY-ELLRELRREG 182 (213)
T ss_pred HHHHHHHHHHHHHcCCHHHHhCCc-ccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhcC
Confidence 445667777754211100 0111 12344999999999 999999999999 9999999998 8888887667
Q ss_pred CeEEEEEeccccccccHHHHHHhhH
Q 025642 131 FNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 131 ~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
.+++++ +|.......+++.++
T Consensus 183 ~tvi~~----sH~~~~~~~~~d~i~ 203 (213)
T cd03235 183 MTILVV----THDLGLVLEYFDRVL 203 (213)
T ss_pred CEEEEE----eCCHHHHHHhcCEEE
Confidence 787655 366665556655443
No 75
>PRK10908 cell division protein FtsE; Provisional
Probab=99.88 E-value=4.8e-22 Score=170.88 Aligned_cols=143 Identities=12% Similarity=0.121 Sum_probs=101.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC-C------cccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y-~------~~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| + +..++++.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 109 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGA 109 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCC
Confidence 579999999999999999999999999999998875421 22333 2 2234554442
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++++.+++.+...... .+.. .+++++.||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~ 185 (222)
T PRK10908 110 SGDDIRRRVSAALDKVGLLDKAKNFP-IQLSGGEQQRVGIARAVVN--KPAVLLADEPTGNLDDALSEGIL-RLFEEFNR 185 (222)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCCc-hhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHH
Confidence 345677777764321110 0111 13344999999999 999999999999 9999999988 88888876
Q ss_pred CCCeEEEEEeccccccccHHHHHHhh
Q 025642 129 RNFNVCAVYLLDSQFITDVTKFISGC 154 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d~~~~~s~~ 154 (250)
++.+++++. |...+...+++.+
T Consensus 186 ~~~tiii~s----H~~~~~~~~~d~i 207 (222)
T PRK10908 186 VGVTVLMAT----HDIGLISRRSYRM 207 (222)
T ss_pred CCCEEEEEe----CCHHHHHHhCCEE
Confidence 677876663 6665555555443
No 76
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=8.2e-23 Score=182.54 Aligned_cols=151 Identities=15% Similarity=0.195 Sum_probs=107.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-Ccc-------cChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PVA-------MDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-~~~-------~~i~~~i~------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| +++ .++.+.+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~ 114 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNF 114 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHc
Confidence 589999999999999999999999999999999976521 23444 221 14444442
Q ss_pred ----------HHHHHHHhCCC-CCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025642 59 ----------LEDVMEELGLG-PNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (250)
Q Consensus 59 ----------~~~vm~~~~L~-~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~ 125 (250)
+.++++.+|+. +.... ...+.. .+.+++.||++|+. +|+++|+|||++ +|+.++..+. +++++
T Consensus 115 ~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~~LSgGq~qrv~laraL~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~ 190 (286)
T PRK13646 115 KMNLDEVKNYAHRLLMDLGFSRDVMSQ-SPFQMSGGQMRKIAIVSILAM--NPDIIVLDEPTAGLDPQSKRQVM-RLLKS 190 (286)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhhhC-CcccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence 44667778885 22111 011111 12334999999999 999999999999 9999999998 99999
Q ss_pred HHh-CCCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 126 l~~-~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
+++ .|.+|+++ +|.+.+...+++.++....+.+
T Consensus 191 l~~~~g~tvl~v----tH~~~~~~~~~dri~~l~~G~i 224 (286)
T PRK13646 191 LQTDENKTIILV----SHDMNEVARYADEVIVMKEGSI 224 (286)
T ss_pred HHHhCCCEEEEE----ecCHHHHHHhCCEEEEEECCEE
Confidence 875 48888766 4777666666666655544443
No 77
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.4e-22 Score=185.69 Aligned_cols=149 Identities=14% Similarity=0.093 Sum_probs=107.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...++| .+..++++++.
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~ 110 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEI 110 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHH
Confidence 57999999999999999999999999999999887642 122333 23446666553
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~ 132 (250)
++++++.+++....... ..+.. .++++++||++|+. +|+++|+|||++ ||+.++..+. ++++++.++ |.+
T Consensus 111 ~~~~~~~l~~lgL~~~~~~~-~~~LSgGq~QRvaLAraL~~--~P~lLLLDEPts~LD~~~~~~l~-~~L~~l~~~~g~t 186 (369)
T PRK11000 111 NQRVNQVAEVLQLAHLLDRK-PKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLGRT 186 (369)
T ss_pred HHHHHHHHHHcCChhhhcCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHhCCE
Confidence 45567788886532111 11111 23345999999999 999999999999 9999999988 888888654 788
Q ss_pred EEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
++++. |...+...+++.++....+
T Consensus 187 vI~vT----Hd~~~~~~~~d~i~vl~~G 210 (369)
T PRK11000 187 MIYVT----HDQVEAMTLADKIVVLDAG 210 (369)
T ss_pred EEEEe----CCHHHHHHhCCEEEEEECC
Confidence 87664 6666556666655444333
No 78
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.88 E-value=2.7e-22 Score=172.00 Aligned_cols=146 Identities=15% Similarity=0.168 Sum_probs=100.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--------cCCCCC-Cc------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-PV------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--------~~~~~y-~~------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| ++ ..++++.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~ 107 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAK 107 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchh
Confidence 58999999999999999999999999999999986542 123444 22 235555443
Q ss_pred ----HHHHHHHh-CCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCC
Q 025642 59 ----LEDVMEEL-GLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (250)
Q Consensus 59 ----~~~vm~~~-~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~ 131 (250)
+.++++.+ ++....... ..+.. .+++++.||++++. +|+++|+|||++ ||+.++..++ ++++++++.+.
T Consensus 108 ~~~~~~~~l~~~~~l~~~~~~~-~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 183 (222)
T cd03224 108 RKARLERVYELFPRLKERRKQL-AGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIRELRDEGV 183 (222)
T ss_pred HHHHHHHHHHHHHhhhhhhhCc-hhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHCCC
Confidence 22344445 343221000 00111 12334999999999 999999999999 9999999999 88888876677
Q ss_pred eEEEEEeccccccccHHHHHHhhHHh
Q 025642 132 NVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 132 ~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+++++. |...+...+++.++..
T Consensus 184 tiii~s----H~~~~~~~~~d~i~~l 205 (222)
T cd03224 184 TILLVE----QNARFALEIADRAYVL 205 (222)
T ss_pred EEEEEe----CCHHHHHHhccEEEEe
Confidence 876653 6666556666554443
No 79
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.88 E-value=1.4e-22 Score=176.13 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=101.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc----------cCCCCC-C------cccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-P------VAMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~----------~~~~~y-~------~~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...++| + +..++++++.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~ 109 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKP 109 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhccccccc
Confidence 58999999999999999999999999999999886542 122333 2 2234444431
Q ss_pred ----------------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 59 ----------------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 59 ----------------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
+.++++.+++........ .+.. .++++++||++++. +|+++|+|||++ +|+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~- 185 (243)
T TIGR02315 110 TWRSLLGRFSEEDKERALSALERVGLADKAYQRA-DQLSGGQQQRVAIARALAQ--QPDLILADEPIASLDPKTSKQVM- 185 (243)
T ss_pred chhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc-ccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 345567777754211100 0111 12344999999999 999999999999 9999999988
Q ss_pred HHHHHHHhC-CCeEEEEEeccccccccHHHHHHhhHH
Q 025642 121 NFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 121 ~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++++.++ |.+++++. |.......+++.++.
T Consensus 186 ~~l~~~~~~~~~tiii~t----H~~~~~~~~~d~v~~ 218 (243)
T TIGR02315 186 DYLKRINKEDGITVIINL----HQVDLAKKYADRIVG 218 (243)
T ss_pred HHHHHHHHHcCCEEEEEe----CCHHHHHHhcCeEEE
Confidence 888888654 77876653 666655566554443
No 80
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.1e-22 Score=180.12 Aligned_cols=148 Identities=12% Similarity=0.072 Sum_probs=103.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc---------cCCCCC-Ccc-------cChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-PVA-------MDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~---------~~~~~y-~~~-------~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| +++ .++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~ 108 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGV 108 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCC
Confidence 58999999999999999999999999999999987642 122444 221 12333221
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++++.+|+.+...... .+.. .+++++.||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgG~~qrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~ 184 (271)
T PRK13638 109 PEAEITRRVDEALTLVDAQHFRHQPI-QCLSHGQKKRVAIAGALVL--QARYLLLDEPTAGLDPAGRTQMI-AIIRRIVA 184 (271)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhcCCc-hhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 345677777754211110 0111 12344999999999 999999999999 9999999998 88888876
Q ss_pred CCCeEEEEEeccccccccHHHHHHhhHHhhh
Q 025642 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (250)
+|.+++++. |.......+++.++....
T Consensus 185 ~g~tii~vt----H~~~~~~~~~d~i~~l~~ 211 (271)
T PRK13638 185 QGNHVIISS----HDIDLIYEISDAVYVLRQ 211 (271)
T ss_pred CCCEEEEEe----CCHHHHHHhCCEEEEEEC
Confidence 688876653 666655666665544433
No 81
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2e-22 Score=176.58 Aligned_cols=145 Identities=15% Similarity=0.121 Sum_probs=101.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Cc------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| ++ ..++++++.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~ 112 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTG 112 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccch
Confidence 589999999999999999999999999999999876421 12332 22 234544332
Q ss_pred ---------------------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhH
Q 025642 59 ---------------------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (250)
Q Consensus 59 ---------------------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~ 115 (250)
+.++++.+|+.+...... .+.. .+++++.||++++. +|+++|+|||++ ||+.++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~ 189 (255)
T PRK11300 113 LFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA-GNLAYGQQRRLEIARCMVT--QPEILMLDEPAAGLNPKET 189 (255)
T ss_pred hhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-hhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHH
Confidence 234456666654211110 1111 12344999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhC-CCeEEEEEeccccccccHHHHHHhhHH
Q 025642 116 VPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 116 ~~i~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
..+. +++.+++++ |.+++++. |...+...+++.++.
T Consensus 190 ~~l~-~~L~~~~~~~~~tii~~s----H~~~~~~~~~d~i~~ 226 (255)
T PRK11300 190 KELD-ELIAELRNEHNVTVLLIE----HDMKLVMGISDRIYV 226 (255)
T ss_pred HHHH-HHHHHHHhhcCCEEEEEe----CCHHHHHHhCCEEEE
Confidence 9998 888888765 78886664 777666666654443
No 82
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.1e-22 Score=182.03 Aligned_cols=152 Identities=17% Similarity=0.154 Sum_probs=110.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-Ccc-------cChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PVA-------MDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-~~~-------~~i~~~i~------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +++ .++.+.+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~ 114 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF 114 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc
Confidence 589999999999999999999999999999999976521 23444 221 24444442
Q ss_pred ----------HHHHHHHhCCCC-CC-CchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025642 59 ----------LEDVMEELGLGP-NG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (250)
Q Consensus 59 ----------~~~vm~~~~L~~-~g-~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~ 125 (250)
++++++.++|.+ .. .....+. ..+++++.||++|+. +|+++|+||||+ ||+.++..+. +++++
T Consensus 115 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS-gGq~qrv~lAraL~~--~P~llllDEPt~~LD~~~~~~l~-~~L~~ 190 (290)
T PRK13634 115 GVSEEDAKQKAREMIELVGLPEELLARSPFELS-GGQMRRVAIAGVLAM--EPEVLVLDEPTAGLDPKGRKEMM-EMFYK 190 (290)
T ss_pred CCCHHHHHHHHHHHHHHCCCChhhhhCCcccCC-HHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence 456777888863 21 1111111 123344999999999 999999999999 9999999998 88999
Q ss_pred HHhC-CCeEEEEEeccccccccHHHHHHhhHHhhhhHhH
Q 025642 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (250)
Q Consensus 126 l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~ 163 (250)
++++ |.+|+++ +|.......+++.++....+.+.
T Consensus 191 l~~~~g~tviii----tHd~~~~~~~~drv~~l~~G~i~ 225 (290)
T PRK13634 191 LHKEKGLTTVLV----THSMEDAARYADQIVVMHKGTVF 225 (290)
T ss_pred HHHhcCCEEEEE----eCCHHHHHHhCCEEEEEECCEEE
Confidence 8754 8888766 47777777777776665555443
No 83
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.88 E-value=1.9e-22 Score=185.30 Aligned_cols=150 Identities=14% Similarity=0.157 Sum_probs=108.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----CCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++.+++.
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~ 109 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPN 109 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCC
Confidence 579999999999999999999999999999999876521 22333 22344444332
Q ss_pred -------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 -------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 -------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
++++++.+++....... ..+.. .++++++||++|+. +|+++|+|||++ ||+.++..+. +.++++.++
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSgGq~QRvalArAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~ 185 (353)
T PRK10851 110 AAAIKAKVTQLLEMVQLAHLADRY-PAQLSGGQKQRVALARALAV--EPQILLLDEPFGALDAQVRKELR-RWLRQLHEE 185 (353)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHh
Confidence 44567788886542111 11111 23445999999999 999999999999 9999999988 888888765
Q ss_pred -CCeEEEEEeccccccccHHHHHHhhHHhhhhH
Q 025642 130 -NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 130 -~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (250)
|.++++|. |...+...+++.++....+.
T Consensus 186 ~g~tii~vT----Hd~~ea~~~~Dri~vl~~G~ 214 (353)
T PRK10851 186 LKFTSVFVT----HDQEEAMEVADRVVVMSQGN 214 (353)
T ss_pred cCCEEEEEe----CCHHHHHHhCCEEEEEECCE
Confidence 78887664 77776666766655544443
No 84
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.88 E-value=1.8e-22 Score=185.93 Aligned_cols=149 Identities=13% Similarity=0.188 Sum_probs=109.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC--ceEEEeecCCc-----cCCCCC-------CcccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVR--RTMHIVNLDPA-----AENFDY-------PVAMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~--G~i~i~~~dp~-----~~~~~y-------~~~~~i~~~i~----------- 58 (250)
+++|+||||||||||+++|+|+.+|++ |+|.+.|.+.. ...+.| .+..++++++.
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~ 112 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKA 112 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHH
Confidence 579999999999999999999999999 99999987642 122332 34456666553
Q ss_pred -----HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC--
Q 025642 59 -----LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-- 129 (250)
Q Consensus 59 -----~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-- 129 (250)
++++++.++|.+..... ..+.. .++++++||++|+. +|+++++|||++ ||+..+.++. +.++++.++
T Consensus 113 ~~~~~v~~~l~~~gL~~~~~~~-~~~LSgGq~QRvaLARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~~~ 188 (362)
T TIGR03258 113 DIAERVADALKLVGLGDAAAHL-PAQLSGGMQQRIAIARAIAI--EPDVLLLDEPLSALDANIRANMR-EEIAALHEELP 188 (362)
T ss_pred HHHHHHHHHHHhcCCCchhhCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHhCC
Confidence 55678888887643211 11122 23445999999999 999999999999 9999999988 888888765
Q ss_pred CCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 130 ~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
|.++++| +|...+...+++.++....+
T Consensus 189 g~til~v----THd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 189 ELTILCV----THDQDDALTLADKAGIMKDG 215 (362)
T ss_pred CCEEEEE----eCCHHHHHHhCCEEEEEECC
Confidence 6788766 36666666666655544433
No 85
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.88 E-value=6e-22 Score=169.89 Aligned_cols=130 Identities=16% Similarity=0.140 Sum_probs=94.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-C------cccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P------VAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-~------~~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| + +..++++.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 112 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK 112 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC
Confidence 589999999999999999999999999999998876421 22444 2 2234555442
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+|+.+...... .... .+++++.||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 113 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~ 188 (221)
T TIGR02211 113 KSVKEAKERAYEMLEKVGLEHRINHRP-SELSGGERQRVAIARALVN--QPSLVLADEPTGNLDNNNAKIIF-DLMLELN 188 (221)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCCh-hhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHHH
Confidence 345677788865321110 1111 12344999999999 999999999999 9999999998 8888886
Q ss_pred h-CCCeEEEEE
Q 025642 128 S-RNFNVCAVY 137 (250)
Q Consensus 128 ~-~~~~vi~v~ 137 (250)
+ .+.+++++.
T Consensus 189 ~~~~~tii~~t 199 (221)
T TIGR02211 189 RELNTSFLVVT 199 (221)
T ss_pred HhcCCEEEEEe
Confidence 5 477876664
No 86
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.6e-22 Score=169.62 Aligned_cols=143 Identities=20% Similarity=0.276 Sum_probs=100.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-C------cccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-P------VAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-~------~~~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| + +..++.+.+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE 106 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHH
Confidence 579999999999999999999999999999999876421 22333 2 2235555443
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~ 132 (250)
+.++++.+++.+..... ..+.. .++++++||++++. +|+++|+|||++ +|+.++..+. ++++++++ +.+
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~t 181 (211)
T cd03264 107 VKARVDEVLELVNLGDRAKKK-IGSLSGGMRRRVGIAQALVG--DPSILIVDEPTAGLDPEERIRFR-NLLSELGE-DRI 181 (211)
T ss_pred HHHHHHHHHHHCCCHHHHhCc-hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHhC-CCE
Confidence 34566677775421110 01111 12334999999999 999999999999 9999999988 88898875 467
Q ss_pred EEEEEeccccccccHHHHHHhhH
Q 025642 133 VCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
++++ +|.......+++.++
T Consensus 182 ii~v----sH~~~~~~~~~d~i~ 200 (211)
T cd03264 182 VILS----THIVEDVESLCNQVA 200 (211)
T ss_pred EEEE----cCCHHHHHHhCCEEE
Confidence 6655 366655555555443
No 87
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.88 E-value=2.9e-22 Score=176.60 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=106.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--cCCCCC-------CcccChhhhhh----------HHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-------PVAMDIRELIS----------LEDVME 64 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--~~~~~y-------~~~~~i~~~i~----------~~~vm~ 64 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| .+..++++.+. +.++++
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~ 119 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALA 119 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHH
Confidence 58999999999999999999999999999998775431 122333 22345665543 456788
Q ss_pred HhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEEeccc
Q 025642 65 ELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDS 141 (250)
Q Consensus 65 ~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~vi~v~l~d~ 141 (250)
.+++.+...... .+.. .+++++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .+.+++++ +
T Consensus 120 ~~gl~~~~~~~~-~~LSgGqkqrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tviiv----s 191 (257)
T PRK11247 120 AVGLADRANEWP-AALSGGQKQRVALARALIH--RPGLLLLDEPLGALDALTRIEMQ-DLIESLWQQHGFTVLLV----T 191 (257)
T ss_pred HcCChhHhcCCh-hhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEE----e
Confidence 888865321110 1111 12344999999999 999999999999 9999999988 88888754 47887666 3
Q ss_pred cccccHHHHHHhhHHhhhhH
Q 025642 142 QFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 142 ~~~~d~~~~~s~~l~~~~~~ 161 (250)
|.......+++.++....+.
T Consensus 192 Hd~~~~~~~~d~i~~l~~G~ 211 (257)
T PRK11247 192 HDVSEAVAMADRVLLIEEGK 211 (257)
T ss_pred CCHHHHHHhCCEEEEEECCE
Confidence 76666666666655544443
No 88
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.8e-22 Score=179.56 Aligned_cols=149 Identities=14% Similarity=0.134 Sum_probs=105.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-Ccc-------cChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PVA-------MDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-~~~-------~~i~~~i~------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| +++ .++++.+.
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~ 114 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF 114 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc
Confidence 579999999999999999999999999999998865321 22444 221 24444432
Q ss_pred ----------HHHHHHHhCCCCC-CCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025642 59 ----------LEDVMEELGLGPN-GGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (250)
Q Consensus 59 ----------~~~vm~~~~L~~~-g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~ 125 (250)
++++++.+++.+. .... ..+.. .+++++.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 115 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 190 (280)
T PRK13649 115 GVSQEEAEALAREKLALVGISESLFEKN-PFELSGGQMRRVAIAGILAM--EPKILVLDEPTAGLDPKGRKELM-TLFKK 190 (280)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhhhCC-cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 3455667787631 1110 00111 23344999999999 999999999999 9999999988 88888
Q ss_pred HHhCCCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 126 l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
+++.+.+|+++ +|...+...+++.++....+
T Consensus 191 ~~~~~~tiiiv----sH~~~~~~~~~d~i~~l~~G 221 (280)
T PRK13649 191 LHQSGMTIVLV----THLMDDVANYADFVYVLEKG 221 (280)
T ss_pred HHHCCCEEEEE----eccHHHHHHhCCEEEEEECC
Confidence 87667888666 36666666666665554443
No 89
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.88 E-value=4.7e-22 Score=168.68 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----------cCCCCC-C------cccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-P------VAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----------~~~~~y-~------~~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| + +..++++++.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~ 105 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKK 105 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcC
Confidence 57999999999999999999999999999999987631 122333 1 2345555432
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+|+++...... .+.. .+.+++.||++++. +|+++|+|||++ +|+.++..+. ++++++.
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~lS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 181 (206)
T TIGR03608 106 LSKKEKREKKKEALEKVGLNLKLKQKI-YELSGGEQQRVALARAILK--DPPLILADEPTGSLDPKNRDEVL-DLLLELN 181 (206)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhcCCh-hhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcCCCCHHHHHHHH-HHHHHHH
Confidence 445777888854321110 1111 12334899999999 999999999999 9999999988 8888887
Q ss_pred hCCCeEEEEE
Q 025642 128 SRNFNVCAVY 137 (250)
Q Consensus 128 ~~~~~vi~v~ 137 (250)
+.+.+++++.
T Consensus 182 ~~~~tii~~s 191 (206)
T TIGR03608 182 DEGKTIIIVT 191 (206)
T ss_pred hcCCEEEEEe
Confidence 6678876653
No 90
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=9.9e-22 Score=167.04 Aligned_cols=130 Identities=13% Similarity=0.070 Sum_probs=94.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-------CcccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-------~~~~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 108 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDE 108 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHH
Confidence 589999999999999999999999999999998866421 12222 22345555442
Q ss_pred -HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025642 59 -LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (250)
Q Consensus 59 -~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~ 135 (250)
++++++.+|+.+..... ..+... ++++++||++++. +|+++|+|||++ +|+.++..+. ++++++++.+.++++
T Consensus 109 ~~~~~l~~~gl~~~~~~~-~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii 184 (204)
T PRK13538 109 ALWEALAQVGLAGFEDVP-VRQLSAGQQRRVALARLWLT--RAPLWILDEPFTAIDKQGVARLE-ALLAQHAEQGGMVIL 184 (204)
T ss_pred HHHHHHHHcCCHHHhhCC-hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEE
Confidence 45577788876431110 011111 2334999999999 999999999999 9999999998 888888766778766
Q ss_pred EE
Q 025642 136 VY 137 (250)
Q Consensus 136 v~ 137 (250)
+.
T Consensus 185 ~s 186 (204)
T PRK13538 185 TT 186 (204)
T ss_pred Ee
Confidence 53
No 91
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.7e-22 Score=183.43 Aligned_cols=163 Identities=15% Similarity=0.134 Sum_probs=113.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------------------CCCCC-Ccc-------cC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------------ENFDY-PVA-------MD 52 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------------------~~~~y-~~~-------~~ 52 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... +.++| +++ .+
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~t 133 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDT 133 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccch
Confidence 589999999999999999999999999999998855321 12333 221 14
Q ss_pred hhhhhh----------------HHHHHHHhCCCC-CCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHH
Q 025642 53 IRELIS----------------LEDVMEELGLGP-NGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (250)
Q Consensus 53 i~~~i~----------------~~~vm~~~~L~~-~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~ 113 (250)
+++.+. +.++++.+|++. ..... ..+.. .++++++||++|+. +|+++|+||||+ ||+.
T Consensus 134 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LSgGqkqRvaiAraL~~--~p~iLLLDEPtsgLD~~ 210 (320)
T PRK13631 134 IEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS-PFGLSGGQKRRVAIAGILAI--QPEILIFDEPTAGLDPK 210 (320)
T ss_pred HHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC-cccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCCHH
Confidence 444332 456677888852 21110 01111 23344999999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeecCc
Q 025642 114 THVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 174 (250)
Q Consensus 114 ~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK 174 (250)
++..++ +++++++++|.+++++ +|.+.....+++.++....+.+....++-.+++.
T Consensus 211 ~~~~l~-~~L~~l~~~g~Tiiiv----tHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 211 GEHEMM-QLILDAKANNKTVFVI----THTMEHVLEVADEVIVMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred HHHHHH-HHHHHHHHCCCEEEEE----ecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999 8888887678888766 4777666677777666655555444444433333
No 92
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=5.1e-22 Score=167.99 Aligned_cols=135 Identities=19% Similarity=0.350 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCC-----ceEEEeecCCccC---------CCCC------CcccChhhhhh----
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR-----RTMHIVNLDPAAE---------NFDY------PVAMDIRELIS---- 58 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~-----G~i~i~~~dp~~~---------~~~y------~~~~~i~~~i~---- 58 (250)
-++++|||+|||||||+|++..+..... |+|.+.|.+.... .++. |...+|+|++.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r 113 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLR 113 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHH
Confidence 3689999999999999999999877654 9999999876331 1111 22356777665
Q ss_pred ------------HHHHHHHh-------------CCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCH
Q 025642 59 ------------LEDVMEEL-------------GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IEL 112 (250)
Q Consensus 59 ------------~~~vm~~~-------------~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~ 112 (250)
++..++.- +++-.|| +++++.|||+|+. +|++|++|||++ |||
T Consensus 114 ~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGG---------QQQRLcIARalAv--~PeVlLmDEPtSALDP 182 (253)
T COG1117 114 LHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGG---------QQQRLCIARALAV--KPEVLLMDEPTSALDP 182 (253)
T ss_pred hhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChh---------HHHHHHHHHHHhc--CCcEEEecCcccccCc
Confidence 22222222 2233333 3466999999999 999999999999 999
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhh
Q 025642 113 FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (250)
Q Consensus 113 ~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~ 154 (250)
.+...+- +++.+|+ ++.||++|. |.+....+..+..
T Consensus 183 IsT~kIE-eLi~eLk-~~yTIviVT----HnmqQAaRvSD~t 218 (253)
T COG1117 183 ISTLKIE-ELITELK-KKYTIVIVT----HNMQQAARVSDYT 218 (253)
T ss_pred hhHHHHH-HHHHHHH-hccEEEEEe----CCHHHHHHHhHhh
Confidence 9999987 9999996 578998885 6666555554433
No 93
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=1.3e-21 Score=167.55 Aligned_cols=143 Identities=14% Similarity=0.062 Sum_probs=103.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc----cCCCCC-------CcccChhhhhh-------------H
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDY-------PVAMDIRELIS-------------L 59 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~----~~~~~y-------~~~~~i~~~i~-------------~ 59 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| .+..++.+.+. +
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~ 118 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMP 118 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHH
Confidence 57899999999999999999999999999999986542 122333 12235555542 3
Q ss_pred HHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 60 EDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 60 ~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+++++.+++.+...... .+.. .++++++||++++. +|+++|+|||++ +|+.++..+. +++++++++|.+++++
T Consensus 119 ~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~- 193 (214)
T PRK13543 119 GSALAIVGLAGYEDTLV-RQLSAGQKKRLALARLWLS--PAPLWLLDEPYANLDLEGITLVN-RMISAHLRGGGAALVT- 193 (214)
T ss_pred HHHHHHcCChhhccCCh-hhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE-
Confidence 45667777764321111 1111 12334999999999 999999999999 9999999888 8888887777887665
Q ss_pred eccccccccHHHHHHhh
Q 025642 138 LLDSQFITDVTKFISGC 154 (250)
Q Consensus 138 l~d~~~~~d~~~~~s~~ 154 (250)
+|...+...+++.+
T Consensus 194 ---sH~~~~~~~~~~~i 207 (214)
T PRK13543 194 ---THGAYAAPPVRTRM 207 (214)
T ss_pred ---ecChhhhhhhcceE
Confidence 47777666666554
No 94
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.87 E-value=5.7e-22 Score=173.19 Aligned_cols=145 Identities=16% Similarity=0.188 Sum_probs=101.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc---------------cCCCCC-C------cccChhhhhh---
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------------AENFDY-P------VAMDIRELIS--- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~---------------~~~~~y-~------~~~~i~~~i~--- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| + +..++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 110 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGP 110 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHH
Confidence 58999999999999999999999999999999876431 112333 1 2234554432
Q ss_pred --------------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025642 59 --------------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (250)
Q Consensus 59 --------------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~l 122 (250)
+.++++.+|+.+..... ..+.. .+++++.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~Gq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 186 (250)
T PRK11264 111 VIVKGEPKEEATARARELLAKVGLAGKETSY-PRRLSGGQQQRVAIARALAM--RPEVILFDEPTSALDPELVGEVL-NT 186 (250)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCcchhhCC-hhhCChHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 34566777776431110 00111 12344999999999 999999999999 9999999988 88
Q ss_pred HHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 123 l~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++.++|.+++++ +|...+...+++.++.
T Consensus 187 l~~~~~~~~tvi~~----tH~~~~~~~~~d~i~~ 216 (250)
T PRK11264 187 IRQLAQEKRTMVIV----THEMSFARDVADRAIF 216 (250)
T ss_pred HHHHHhcCCEEEEE----eCCHHHHHHhcCEEEE
Confidence 88887668887665 3666655566554443
No 95
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.87 E-value=4.9e-22 Score=170.92 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=104.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc---CCCCC-------CcccChhhhhh------------HHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------LED 61 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~---~~~~y-------~~~~~i~~~i~------------~~~ 61 (250)
+++|+||||||||||+++|+|.++|++|+|.+.|.+... ..+.| .+..++++.+. +.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 107 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDE 107 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHH
Confidence 579999999999999999999999999999998865421 12333 12345655543 456
Q ss_pred HHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEec
Q 025642 62 VMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (250)
Q Consensus 62 vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~ 139 (250)
+++.+|+.+...... .+.. .+.+++.||++++. +|+++++|||++ +|+.++..+. +++++++++|.+++++
T Consensus 108 ~l~~~~l~~~~~~~~-~~LS~G~~~rv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~L~~~~~~~~tiii~--- 180 (223)
T TIGR03740 108 VLNIVDLTNTGKKKA-KQFSLGMKQRLGIAIALLN--HPKLLILDEPTNGLDPIGIQELR-ELIRSFPEQGITVILS--- 180 (223)
T ss_pred HHHHcCCcHHHhhhH-hhCCHHHHHHHHHHHHHhc--CCCEEEECCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEE---
Confidence 677788865321110 1111 12334899999999 999999999999 9999999998 8888887667787655
Q ss_pred cccccccHHHHHHhhHHh
Q 025642 140 DSQFITDVTKFISGCMAS 157 (250)
Q Consensus 140 d~~~~~d~~~~~s~~l~~ 157 (250)
+|...+...+++.++..
T Consensus 181 -sH~~~~~~~~~d~i~~l 197 (223)
T TIGR03740 181 -SHILSEVQQLADHIGII 197 (223)
T ss_pred -cCCHHHHHHhcCEEEEE
Confidence 46666666666654443
No 96
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=4.2e-22 Score=173.47 Aligned_cols=144 Identities=22% Similarity=0.273 Sum_probs=102.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc------ccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV------AMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~------~~~i~~~i~----------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| ++ ..++++.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 108 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKE 108 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHH
Confidence 589999999999999999999999999999999876421 22333 22 235554442
Q ss_pred -----HHHHHHHhCCCC--CCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 -----LEDVMEELGLGP--NGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 -----~~~vm~~~~L~~--~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
+.++++.+++.+ .... ...+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++++
T Consensus 109 ~~~~~~~~~l~~l~l~~~~~~~~-~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~ 184 (242)
T cd03295 109 KIRERADELLALVGLDPAEFADR-YPHELSGGQQQRVGVARALAA--DPPLLLMDEPFGALDPITRDQLQ-EEFKRLQQE 184 (242)
T ss_pred HHHHHHHHHHHHcCCCcHHHHhc-ChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHHHH
Confidence 456677888875 2111 111111 12344999999999 999999999999 9999999988 888888654
Q ss_pred -CCeEEEEEeccccccccHHHHHHhhH
Q 025642 130 -NFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 130 -~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
|.+++++ +|...+...+++.++
T Consensus 185 ~g~tvii~----sH~~~~~~~~~d~i~ 207 (242)
T cd03295 185 LGKTIVFV----THDIDEAFRLADRIA 207 (242)
T ss_pred cCCEEEEE----ecCHHHHHHhCCEEE
Confidence 7887665 366655555555443
No 97
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.87 E-value=3.9e-22 Score=171.94 Aligned_cols=144 Identities=15% Similarity=0.235 Sum_probs=102.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--cCCCCC-Cc--------ccChhhhh---------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-PV--------AMDIRELI--------------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--~~~~~y-~~--------~~~i~~~i--------------- 57 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| ++ ..++.+.+
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 87 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPC 87 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccCCc
Confidence 58999999999999999999999999999999997652 122333 11 12333322
Q ss_pred -----hHHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025642 58 -----SLEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (250)
Q Consensus 58 -----~~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~ 130 (250)
.+.++++.+++.+....... +.. .+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++++|
T Consensus 88 ~~~~~~~~~~l~~~~l~~~~~~~~~-~LS~G~~qrv~laral~~--~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~ 163 (223)
T TIGR03771 88 VADFAAVRDALRRVGLTELADRPVG-ELSGGQRQRVLVARALAT--RPSVLLLDEPFTGLDMPTQELLT-ELFIELAGAG 163 (223)
T ss_pred HHHHHHHHHHHHHhCCchhhcCChh-hCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHcC
Confidence 14556778888754211111 111 12344899999999 999999999999 9999999999 8888887668
Q ss_pred CeEEEEEeccccccccHHHHHHhhH
Q 025642 131 FNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 131 ~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
.+++++ +|...+..++++.++
T Consensus 164 ~tvii~----sH~~~~~~~~~d~i~ 184 (223)
T TIGR03771 164 TAILMT----THDLAQAMATCDRVV 184 (223)
T ss_pred CEEEEE----eCCHHHHHHhCCEEE
Confidence 888666 366665566655443
No 98
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.87 E-value=2.5e-22 Score=177.85 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=102.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc----------cCCCCC-C------cccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-P------VAMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~----------~~~~~y-~------~~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| + +..++.+.+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~ 114 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQ 114 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccC
Confidence 58999999999999999999999999999999886532 122333 2 2235555442
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+++........ .+.. .++++++||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 115 ~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~ 190 (269)
T PRK11831 115 LPAPLLHSTVMMKLEAVGLRGAAKLMP-SELSGGMARRAALARAIAL--EPDLIMFDEPFVGQDPITMGVLV-KLISELN 190 (269)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCCh-hhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHH
Confidence 223567777764311110 1111 12334999999999 999999999999 9999999988 8888886
Q ss_pred hC-CCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 128 ~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++ |.+++++. |...+...+++.++..
T Consensus 191 ~~~g~tiiivs----H~~~~~~~~~d~v~~l 217 (269)
T PRK11831 191 SALGVTCVVVS----HDVPEVLSIADHAYIV 217 (269)
T ss_pred HhcCcEEEEEe----cCHHHHHHhhCEEEEE
Confidence 54 77876663 6666666666655443
No 99
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.1e-22 Score=182.98 Aligned_cols=149 Identities=15% Similarity=0.126 Sum_probs=109.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+.+|++|+|.++|.+.. ..+++| ++..++.+++.
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~ 113 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEER 113 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHH
Confidence 57999999999999999999999999999999987642 223333 34556666664
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~ 132 (250)
++++++.+++.+..... ..+.. .++++++||++|+. +|+++|+|||++ ||+..+..+. +.++++.++ |.+
T Consensus 114 ~~~v~~~l~~~gl~~~~~r~-~~~LSgGq~QRVaLARaL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~t 189 (351)
T PRK11432 114 KQRVKEALELVDLAGFEDRY-VDQISGGQQQRVALARALIL--KPKVLLFDEPLSNLDANLRRSMR-EKIRELQQQFNIT 189 (351)
T ss_pred HHHHHHHHHHcCCchhhcCC-hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCE
Confidence 34577788887543111 11222 23445999999999 999999999999 9999999988 788888654 888
Q ss_pred EEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
+++| +|...+...+++.++....+
T Consensus 190 ii~v----THd~~e~~~laD~i~vm~~G 213 (351)
T PRK11432 190 SLYV----THDQSEAFAVSDTVIVMNKG 213 (351)
T ss_pred EEEE----cCCHHHHHHhCCEEEEEECC
Confidence 8766 47776666666655544433
No 100
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.9e-22 Score=179.59 Aligned_cols=148 Identities=11% Similarity=0.105 Sum_probs=104.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| ++ ..++++.+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~ 114 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPH 114 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCH
Confidence 579999999999999999999999999999999976531 22344 11 124555443
Q ss_pred ------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-
Q 025642 59 ------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (250)
Q Consensus 59 ------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~- 129 (250)
+.++++.+|+.+...... .+.. .+++++.||++++. +|+++|+||||+ ||+.++..++ +++++++++
T Consensus 115 ~~~~~~~~~~l~~~gL~~~~~~~~-~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~ 190 (279)
T PRK13650 115 EEMKERVNEALELVGMQDFKEREP-ARLSGGQKQRVAIAGAVAM--RPKIIILDEATSMLDPEGRLELI-KTIKGIRDDY 190 (279)
T ss_pred HHHHHHHHHHHHHCCCHhHhhCCc-ccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhc
Confidence 456777888864321111 1111 23344999999999 999999999999 9999999999 888888764
Q ss_pred CCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 130 ~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
|.+++++. |..... .+++.++....+
T Consensus 191 g~tilivt----H~~~~~-~~~dri~~l~~G 216 (279)
T PRK13650 191 QMTVISIT----HDLDEV-ALSDRVLVMKNG 216 (279)
T ss_pred CCEEEEEe----cCHHHH-HhCCEEEEEECC
Confidence 88887663 655543 345544444333
No 101
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.8e-22 Score=172.90 Aligned_cols=147 Identities=14% Similarity=0.225 Sum_probs=102.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Cc------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| ++ ..++.+++.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~ 110 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLS 110 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccC
Confidence 589999999999999999999999999999999866421 22333 21 234443322
Q ss_pred -------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 -------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 -------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
+.++++.+++....... ..+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++++
T Consensus 111 ~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~ 186 (241)
T PRK10895 111 AEQREDRANELMEEFHIEHLRDSM-GQSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPISVIDIK-RIIEHLRDS 186 (241)
T ss_pred HHHHHHHHHHHHHHcCCHHHhhcc-hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhc
Confidence 44566677775421110 01111 12334899999999 999999999999 9999999988 888888777
Q ss_pred CCeEEEEEeccccccccHHHHHHhhHHhh
Q 025642 130 NFNVCAVYLLDSQFITDVTKFISGCMASL 158 (250)
Q Consensus 130 ~~~vi~v~l~d~~~~~d~~~~~s~~l~~~ 158 (250)
|.+++++ +|...+..++++.++...
T Consensus 187 g~tiii~----sH~~~~~~~~~d~v~~l~ 211 (241)
T PRK10895 187 GLGVLIT----DHNVRETLAVCERAYIVS 211 (241)
T ss_pred CCEEEEE----EcCHHHHHHhcCEEEEEe
Confidence 8887665 366665566665544433
No 102
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.87 E-value=3.2e-22 Score=185.05 Aligned_cols=150 Identities=11% Similarity=0.069 Sum_probs=108.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+.+|++|+|.+.|.+.. ...+.| .+..++.+++.
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~ 121 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEI 121 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHH
Confidence 57999999999999999999999999999999987642 222333 34556666653
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~ 132 (250)
++++++.+++.+..... ..+.. .++++++||++|+. +|+++|+|||++ ||...+..+. +.++++.++ |.+
T Consensus 122 ~~~~~~~l~~~~l~~~~~~~-p~~LSgGq~QRVaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~g~t 197 (375)
T PRK09452 122 TPRVMEALRMVQLEEFAQRK-PHQLSGGQQQRVAIARAVVN--KPKVLLLDESLSALDYKLRKQMQ-NELKALQRKLGIT 197 (375)
T ss_pred HHHHHHHHHHcCCchhhhCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCE
Confidence 35567778887542111 11111 23445999999999 999999999999 9999999888 888888654 888
Q ss_pred EEEEEeccccccccHHHHHHhhHHhhhhH
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (250)
+++|. |...+...+++.++....+.
T Consensus 198 iI~vT----Hd~~ea~~laDri~vl~~G~ 222 (375)
T PRK09452 198 FVFVT----HDQEEALTMSDRIVVMRDGR 222 (375)
T ss_pred EEEEe----CCHHHHHHhCCEEEEEECCE
Confidence 87664 66666566666555444443
No 103
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.9e-22 Score=178.00 Aligned_cols=149 Identities=11% Similarity=0.127 Sum_probs=107.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc---------cCCCCC-Ccc-------cChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-PVA-------MDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~---------~~~~~y-~~~-------~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...++| +++ .++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~ 109 (275)
T PRK13639 30 MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGL 109 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999987642 122344 221 24444432
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++++.+++.+..... ..+... +.+++.||++++. +|+++|+||||+ +|+.++..+. ++++++++
T Consensus 110 ~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~ 185 (275)
T PRK13639 110 SKEEVEKRVKEALKAVGMEGFENKP-PHHLSGGQKKRVAIAGILAM--KPEIIVLDEPTSGLDPMGASQIM-KLLYDLNK 185 (275)
T ss_pred CHHHHHHHHHHHHHHCCCchhhcCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHH
Confidence 34567778886432111 112222 2334999999999 999999999999 9999999999 88888876
Q ss_pred CCCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
+|.+++++. |...+...+++.++....+
T Consensus 186 ~~~til~vt----H~~~~~~~~~d~i~~l~~G 213 (275)
T PRK13639 186 EGITIIIST----HDVDLVPVYADKVYVMSDG 213 (275)
T ss_pred CCCEEEEEe----cCHHHHHHhCCEEEEEECC
Confidence 688887664 7777666777765554443
No 104
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.3e-22 Score=183.71 Aligned_cols=149 Identities=12% Similarity=0.187 Sum_probs=108.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----------cCCCCC-------CcccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----------~~~~~y-------~~~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| .+..++++++.
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~ 105 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSM 105 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhh
Confidence 58999999999999999999999999999999886532 122333 23346666654
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~ 132 (250)
++++++.+|+.+...... .+.. .++++++||++|+. +|+++|+|||++ ||+.++..+. ++++++.++ |.+
T Consensus 106 ~~~~~~~l~~~gl~~~~~~~~-~~LSgGq~qRvalaraL~~--~p~llLLDEPts~LD~~~~~~l~-~~L~~l~~~~g~t 181 (352)
T PRK11144 106 VAQFDKIVALLGIEPLLDRYP-GSLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKRELL-PYLERLAREINIP 181 (352)
T ss_pred HHHHHHHHHHcCCchhhhCCc-ccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCe
Confidence 456788888875321111 1111 23445999999999 999999999999 9999999988 888888764 788
Q ss_pred EEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
++++. |...+...+++.++....+
T Consensus 182 ii~vT----Hd~~~~~~~~d~i~~l~~G 205 (352)
T PRK11144 182 ILYVS----HSLDEILRLADRVVVLEQG 205 (352)
T ss_pred EEEEe----cCHHHHHHhCCEEEEEeCC
Confidence 76663 6666666666655544333
No 105
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2e-22 Score=179.76 Aligned_cols=152 Identities=13% Similarity=0.143 Sum_probs=109.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc---------cCCCCC-Cc-------ccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-PV-------AMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~---------~~~~~y-~~-------~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...++| ++ ..++++.+.
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~ 113 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKL 113 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCC
Confidence 58999999999999999999999999999999997652 122344 22 124444442
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
++++++.+|+..........-...+++++.||++|+. +|+++|+|||++ ||+.++..+. +++++++++
T Consensus 114 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~--~p~lLilDEPt~gLD~~~~~~l~-~~l~~l~~~ 190 (283)
T PRK13636 114 PEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM--EPKVLVLDEPTAGLDPMGVSEIM-KLLVEMQKE 190 (283)
T ss_pred CHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHh
Confidence 4556778888653211111011122344999999999 999999999999 9999999998 888888764
Q ss_pred -CCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 130 -NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 130 -~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
|.+|+++ +|.+.....+++.++....+.+
T Consensus 191 ~g~tillv----sH~~~~~~~~~dri~~l~~G~i 220 (283)
T PRK13636 191 LGLTIIIA----THDIDIVPLYCDNVFVMKEGRV 220 (283)
T ss_pred CCCEEEEE----ecCHHHHHHhCCEEEEEECCEE
Confidence 8888766 4777777777776665544433
No 106
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.7e-22 Score=177.49 Aligned_cols=152 Identities=15% Similarity=0.138 Sum_probs=108.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| ++ ..++.+.+.
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~ 111 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDE 111 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCH
Confidence 589999999999999999999999999999999876532 12333 11 224554442
Q ss_pred ------HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025642 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (250)
Q Consensus 59 ------~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~ 130 (250)
+.++++.+++.+........-...+++++.||++++. +|+++|+||||+ +|+.++..+. +++++++++ |
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~--~p~llilDEPt~gLD~~~~~~l~-~~l~~l~~~~g 188 (277)
T PRK13652 112 ETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM--EPQVLVLDEPTAGLDPQGVKELI-DFLNDLPETYG 188 (277)
T ss_pred HHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 3556777788653211111011122344999999999 999999999999 9999999988 889888765 7
Q ss_pred CeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 131 ~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
.+++++ +|...+..++++.++....+.+
T Consensus 189 ~tvli~----tH~~~~~~~~~drv~~l~~G~i 216 (277)
T PRK13652 189 MTVIFS----THQLDLVPEMADYIYVMDKGRI 216 (277)
T ss_pred CEEEEE----ecCHHHHHHhCCEEEEEECCeE
Confidence 887665 4777777777776665544443
No 107
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=2.4e-23 Score=174.45 Aligned_cols=150 Identities=15% Similarity=0.218 Sum_probs=111.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--------cCCCCC-Ccc------cChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-PVA------MDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--------~~~~~y-~~~------~~i~~~i~---------- 58 (250)
++|++|||||||||.+.++.|+.+|++|+|.+++.|.. .-.++| ||. +++++++.
T Consensus 32 iVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~ 111 (243)
T COG1137 32 IVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDL 111 (243)
T ss_pred EEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcch
Confidence 68999999999999999999999999999999999863 345677 554 34555443
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
+++++++|++.+-.......-.-.++-++.|||+|+. +|++++||||++ +||.+..++- ++++.|++.
T Consensus 112 ~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~--~P~fiLLDEPFAGVDPiaV~dIq-~iI~~L~~r 188 (243)
T COG1137 112 KKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPIAVIDIQ-RIIKHLKDR 188 (243)
T ss_pred hHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhc--CCCEEEecCCccCCCchhHHHHH-HHHHHHHhC
Confidence 4577888887653211100001112233999999999 999999999999 9999999988 999999988
Q ss_pred CCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 130 ~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
|..|+++ -|...+--.+++++-....+
T Consensus 189 giGvLIT----DHNVREtL~i~dRaYIi~~G 215 (243)
T COG1137 189 GIGVLIT----DHNVRETLDICDRAYIISDG 215 (243)
T ss_pred CceEEEc----cccHHHHHhhhheEEEEecC
Confidence 9888644 37777766666655443333
No 108
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.87 E-value=7.9e-22 Score=171.11 Aligned_cols=136 Identities=18% Similarity=0.247 Sum_probs=96.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-C------cccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-P------VAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-~------~~~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| + +..++++.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~ 108 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAE 108 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHH
Confidence 579999999999999999999999999999998875421 12333 1 2234444432
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCC
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF 131 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~ 131 (250)
+.++++.+|+.+...... .+.. .+.+++.||++++. +|+++|+|||++ +|+.++..+. ++++++++ +|.
T Consensus 109 ~~~~~~~~l~~~gl~~~~~~~~-~~LS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~ 184 (236)
T TIGR03864 109 ARERIAALLARLGLAERADDKV-RELNGGHRRRVEIARALLH--RPALLLLDEPTVGLDPASRAAIV-AHVRALCRDQGL 184 (236)
T ss_pred HHHHHHHHHHHcCChhhhcCCh-hhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhCCC
Confidence 345677788765321111 1111 22344899999999 999999999999 9999999999 88888864 577
Q ss_pred eEEEEEeccccccccH
Q 025642 132 NVCAVYLLDSQFITDV 147 (250)
Q Consensus 132 ~vi~v~l~d~~~~~d~ 147 (250)
+++++. |...+.
T Consensus 185 tiii~s----H~~~~~ 196 (236)
T TIGR03864 185 SVLWAT----HLVDEI 196 (236)
T ss_pred EEEEEe----cChhhH
Confidence 876653 555433
No 109
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.87 E-value=3.7e-22 Score=183.50 Aligned_cols=150 Identities=16% Similarity=0.205 Sum_probs=108.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----------cCCCCC-------CcccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----------~~~~~y-------~~~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| .+..++++++.
T Consensus 25 i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~ 104 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRAR 104 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhccC
Confidence 58999999999999999999999999999999886542 122333 22345665543
Q ss_pred -------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 -------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 -------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
++++++.+++.+...... .+.. .+++++.||++|+. +|+++|+|||++ ||+.++..+. +++++++++
T Consensus 105 ~~~~~~~~~~~l~~~gL~~~~~~~~-~~LSgGqkqRvalAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L~~l~~~ 180 (354)
T TIGR02142 105 PSERRISFERVIELLGIGHLLGRLP-GRLSGGEKQRVAIGRALLS--SPRLLLMDEPLAALDDPRKYEIL-PYLERLHAE 180 (354)
T ss_pred hhHHHHHHHHHHHHcCChhHhcCCh-hhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHh
Confidence 456778888865321111 1111 23345999999999 999999999999 9999999998 888888765
Q ss_pred -CCeEEEEEeccccccccHHHHHHhhHHhhhhH
Q 025642 130 -NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 130 -~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (250)
|.+++++ +|...+...+++.++....+.
T Consensus 181 ~g~tiiiv----tH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 181 FGIPILYV----SHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred cCCEEEEE----ecCHHHHHHhCCEEEEEeCCE
Confidence 7887665 366666666666665554443
No 110
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.87 E-value=5.7e-22 Score=169.50 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=101.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----CCCCC-C------cccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-P------VAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----~~~~y-~------~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| + +..++.+++.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~ 105 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQ 105 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHH
Confidence 589999999999999999999999999999998876421 22333 1 2234444432
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~ 132 (250)
+.++++.+++.+...... .+.. .+.++++||++++. +|+++|+|||++ +|+.++..+. ++++++.++ +.+
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~t 181 (213)
T TIGR01277 106 QEKVVDAAQQVGIADYLDRLP-EQLSGGQRQRVALARCLVR--PNPILLLDEPFSALDPLLREEML-ALVKQLCSERQRT 181 (213)
T ss_pred HHHHHHHHHHcCcHHHhhCCc-ccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCCE
Confidence 345677777754321110 0111 12334999999999 999999999999 9999999999 888888654 778
Q ss_pred EEEEEeccccccccHHHHHHhhH
Q 025642 133 VCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
++++. |.......+++.++
T Consensus 182 ii~vs----h~~~~~~~~~d~v~ 200 (213)
T TIGR01277 182 LLMVT----HHLSDARAIASQIA 200 (213)
T ss_pred EEEEe----CCHHHHHhhcCeEE
Confidence 87664 66555455555443
No 111
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.87 E-value=8.5e-22 Score=171.31 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=103.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-C------cccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~------~~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|.++|++|+|.+.|.+... ..+.| + +..++++++.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~ 109 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVF 109 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccc
Confidence 579999999999999999999999999999999876421 12333 1 2234544332
Q ss_pred --------------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025642 59 --------------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (250)
Q Consensus 59 --------------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~l 122 (250)
+.++++.+|+.+...... .+.. .+.+++.||++++. +|+++|+||||+ +|+.++..+. ++
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~Ge~qrv~laral~~--~p~~lllDEPt~~LD~~~~~~l~-~~ 185 (242)
T TIGR03411 110 ASLFFRLSAEEKDRIEEVLETIGLADEADRLA-GLLSHGQKQWLEIGMLLMQ--DPKLLLLDEPVAGMTDEETEKTA-EL 185 (242)
T ss_pred cccccccHHHHHHHHHHHHHHcCCchhhcCCh-hhCCHHHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHHH-HH
Confidence 345667777765321110 1111 12334999999999 999999999999 9999999988 88
Q ss_pred HHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 123 l~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++++++ +.+++++ +|...+...+++.++..
T Consensus 186 l~~~~~-~~tii~~----sH~~~~~~~~~d~i~~l 215 (242)
T TIGR03411 186 LKSLAG-KHSVVVV----EHDMEFVRSIADKVTVL 215 (242)
T ss_pred HHHHhc-CCEEEEE----ECCHHHHHHhCCEEEEE
Confidence 888865 6777655 47776666666655443
No 112
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.1e-22 Score=172.30 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=102.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-------------cCCCCC-Cc------ccChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------AENFDY-PV------AMDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-------------~~~~~y-~~------~~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++. ...+.| ++ ..++.+++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~ 109 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCR 109 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHH
Confidence 58999999999999999999999999999999987631 122444 22 235555442
Q ss_pred ------------HHHHHHHhCCCCCCCc-hhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNGGL-IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g~~-~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
+.++++.+|+.+.... ...+. ..++++++||++++. +|+++|+|||++ +|+.++..+. ++++
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS-~G~~qrv~laral~~--~p~llilDEPt~~LD~~~~~~l~-~~l~ 185 (242)
T PRK11124 110 VLGLSKDQALARAEKLLERLRLKPYADRFPLHLS-GGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIV-SIIR 185 (242)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCC-HHHHHHHHHHHHHhc--CCCEEEEcCCCCcCCHHHHHHHH-HHHH
Confidence 3445677777643211 11111 113344999999999 999999999999 9999999988 8888
Q ss_pred HHHhCCCeEEEEEeccccccccHHHHHHhhH
Q 025642 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 125 ~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
++++.|.+++++ +|.......+++.++
T Consensus 186 ~~~~~~~tii~~----sh~~~~~~~~~d~i~ 212 (242)
T PRK11124 186 ELAETGITQVIV----THEVEVARKTASRVV 212 (242)
T ss_pred HHHHcCCEEEEE----eCCHHHHHHhcCEEE
Confidence 887668887655 366655555555443
No 113
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=9.2e-22 Score=172.39 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=101.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--cCCCCCCcccChhhhhh------------HHHHHHHhCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEELGLG 69 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--~~~~~y~~~~~i~~~i~------------~~~vm~~~~L~ 69 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|...+ .+........++++.+. ..++++.+++.
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~ 106 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIE 106 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCH
Confidence 58999999999999999999999999999998874321 11111122345555542 34567777775
Q ss_pred CCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccccc
Q 025642 70 PNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITD 146 (250)
Q Consensus 70 ~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~vi~v~l~d~~~~~d 146 (250)
...... .-+.. .++++++||++|+. +|+++|+|||++ ||+.++..+. ++++++.+ .+.+++++. |.+..
T Consensus 107 ~~~~~~-~~~LSgGe~qrv~iaraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiivs----Hd~~~ 178 (246)
T cd03237 107 QILDRE-VPELSGGELQRVAIAACLSK--DADIYLLDEPSAYLDVEQRLMAS-KVIRRFAENNEKTAFVVE----HDIIM 178 (246)
T ss_pred HHhhCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEe----CCHHH
Confidence 321110 01111 12344999999999 999999999999 9999999988 88888865 478887664 66665
Q ss_pred HHHHHHhhHH
Q 025642 147 VTKFISGCMA 156 (250)
Q Consensus 147 ~~~~~s~~l~ 156 (250)
...+++.++.
T Consensus 179 ~~~~~d~i~~ 188 (246)
T cd03237 179 IDYLADRLIV 188 (246)
T ss_pred HHHhCCEEEE
Confidence 5666665443
No 114
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.4e-22 Score=186.13 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=108.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-C------cccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P------VAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-~------~~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| + +..++++++.
T Consensus 56 i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~ 135 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG 135 (400)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999999999999999999876421 23444 2 2345665553
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+|+.+..... ..+.. .+++++.||++|+. +|+++|+|||++ ||+.++..+. +++++++
T Consensus 136 ~~~~~~~~~~~e~L~~~gL~~~~~~~-~~~LSgGq~QRv~LArAL~~--~P~iLLLDEPts~LD~~~r~~l~-~~L~~l~ 211 (400)
T PRK10070 136 INAEERREKALDALRQVGLENYAHSY-PDELSGGMRQRVGLARALAI--NPDILLMDEAFSALDPLIRTEMQ-DELVKLQ 211 (400)
T ss_pred CCHHHHHHHHHHHHHHcCCChhhhcC-cccCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HHHHHHH
Confidence 34567888886542111 11122 13345999999999 999999999999 9999999988 8888886
Q ss_pred h-CCCeEEEEEeccccccccHHHHHHhhHHhhhhH
Q 025642 128 S-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 128 ~-~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (250)
+ .+.+++++. |...+..++++.++....+.
T Consensus 212 ~~~g~TIIivT----Hd~~~~~~~~Dri~vL~~G~ 242 (400)
T PRK10070 212 AKHQRTIVFIS----HDLDEAMRIGDRIAIMQNGE 242 (400)
T ss_pred HHCCCeEEEEE----CCHHHHHHhCCEEEEEECCE
Confidence 5 478887663 66666666666665544443
No 115
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.1e-22 Score=172.47 Aligned_cols=145 Identities=15% Similarity=0.216 Sum_probs=101.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----CCCCC-Cc------ccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-PV------AMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----~~~~y-~~------~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 106 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQ 106 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCCHHH
Confidence 579999999999999999999999999999999876421 22333 21 234444332
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~ 132 (250)
+.++++.+|+.+....... +.. .+++++.||++++. +|+++|+|||++ +|+.++..+. ++++++.+ .|.+
T Consensus 107 ~~~~~~~l~~~~l~~~~~~~~~-~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~~~-~~l~~~~~~~~~t 182 (232)
T PRK10771 107 REKLHAIARQMGIEDLLARLPG-QLSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRQEML-TLVSQVCQERQLT 182 (232)
T ss_pred HHHHHHHHHHcCcHHHHhCCcc-cCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCE
Confidence 3456667777542111000 111 12334899999999 999999999999 9999999998 88888865 4778
Q ss_pred EEEEEeccccccccHHHHHHhhHH
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++. |...+...+++.++.
T Consensus 183 iii~s----H~~~~~~~~~d~i~~ 202 (232)
T PRK10771 183 LLMVS----HSLEDAARIAPRSLV 202 (232)
T ss_pred EEEEE----CCHHHHHHhCCEEEE
Confidence 76663 666655555554443
No 116
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.87 E-value=8.2e-22 Score=169.56 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=99.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC-C--------cccChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P--------VAMDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y-~--------~~~~i~~~i~------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| + +..++++++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~ 112 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH 112 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhc
Confidence 589999999999999999999999999999999876421 12333 1 1234544432
Q ss_pred ------------HHHHHHHhCCC-CCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 59 ------------LEDVMEELGLG-PNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 59 ------------~~~vm~~~~L~-~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
..++++.+++. +..... ..+.. .+++++.||++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l 188 (228)
T cd03257 113 GKLSKKEARKEAVLLLLVGVGLPEEVLNRY-PHELSGGQRQRVAIARALAL--NPKLLIADEPTSALDVSVQAQIL-DLL 188 (228)
T ss_pred cCCcHHHHHHHHHHHHHHHCCCChhHhhCC-chhcCHHHHHHHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-HHH
Confidence 12455667764 211110 01111 12344999999999 999999999999 9999999988 888
Q ss_pred HHHHhC-CCeEEEEEeccccccccHHHHHHhhH
Q 025642 124 DHLKSR-NFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 124 ~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
++++++ |.+++++. |.......+++.++
T Consensus 189 ~~~~~~~~~tii~~s----H~~~~~~~~~d~i~ 217 (228)
T cd03257 189 KKLQEELGLTLLFIT----HDLGVVAKIADRVA 217 (228)
T ss_pred HHHHHHcCCEEEEEe----CCHHHHHHhcCeEE
Confidence 888765 78876663 66655555555443
No 117
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.87 E-value=2.7e-21 Score=163.50 Aligned_cols=130 Identities=18% Similarity=0.112 Sum_probs=94.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-------CcccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-------~~~~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 107 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRT 107 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHH
Confidence 589999999999999999999999999999998876421 22333 22345555442
Q ss_pred HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 59 LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 59 ~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
+.++++.+++.+...... .+.. .+++++.||++++. +|+++++|||++ +|+.++..+. +++++++++|.+++++
T Consensus 108 ~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~ 183 (198)
T TIGR01189 108 IEDALAAVGLTGFEDLPA-AQLSAGQQRRLALARLWLS--RAPLWILDEPTTALDKAGVALLA-GLLRAHLARGGIVLLT 183 (198)
T ss_pred HHHHHHHcCCHHHhcCCh-hhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 455677777764321110 0111 12334999999999 999999999999 9999999888 8888887667777665
Q ss_pred E
Q 025642 137 Y 137 (250)
Q Consensus 137 ~ 137 (250)
.
T Consensus 184 s 184 (198)
T TIGR01189 184 T 184 (198)
T ss_pred E
Confidence 3
No 118
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.87 E-value=3.4e-22 Score=176.76 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=102.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc--------cChhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA--------MDIRELI---------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~--------~~i~~~i---------- 57 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| +++ .++.+.+
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~ 120 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDL 120 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCC
Confidence 589999999999999999999999999999998876421 12333 221 1222221
Q ss_pred -------hHHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 58 -------SLEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 58 -------~~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
.+.++++.+++.+........+.. .+.+++.||++++. +|+++|+|||++ ||+.++..+. ++++++++
T Consensus 121 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~ 197 (267)
T PRK15112 121 EPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALIL--RPKVIIADEALASLDMSMRSQLI-NLMLELQE 197 (267)
T ss_pred CHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHh--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHH
Confidence 145678888885321111111111 12334999999999 999999999999 9999999888 88888875
Q ss_pred C-CCeEEEEEeccccccccHHHHHHhhHHhh
Q 025642 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASL 158 (250)
Q Consensus 129 ~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~ 158 (250)
+ |.+++++ +|...+...+++.++...
T Consensus 198 ~~g~tviiv----sH~~~~~~~~~d~i~~l~ 224 (267)
T PRK15112 198 KQGISYIYV----TQHLGMMKHISDQVLVMH 224 (267)
T ss_pred HcCcEEEEE----eCCHHHHHHhcCEEEEEE
Confidence 4 7787665 477766666666554433
No 119
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.87 E-value=6e-22 Score=170.78 Aligned_cols=130 Identities=19% Similarity=0.212 Sum_probs=94.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-C------cccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P------VAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-~------~~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| + +..++.+.+.
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~ 117 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG 117 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC
Confidence 689999999999999999999999999999998865421 12333 2 2234544432
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+++....... ..+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++
T Consensus 118 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~Ge~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 193 (228)
T PRK10584 118 ESSRQSRNGAKALLEQLGLGKRLDHL-PAQLSGGEQQRVALARAFNG--RPDVLFADEPTGNLDRQTGDKIA-DLLFSLN 193 (228)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHH
Confidence 34567777876431111 01111 12344999999999 999999999999 9999999988 8888886
Q ss_pred hC-CCeEEEEE
Q 025642 128 SR-NFNVCAVY 137 (250)
Q Consensus 128 ~~-~~~vi~v~ 137 (250)
++ |.+|+++.
T Consensus 194 ~~~~~tii~~s 204 (228)
T PRK10584 194 REHGTTLILVT 204 (228)
T ss_pred HhcCCEEEEEe
Confidence 54 77876663
No 120
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.87 E-value=7e-22 Score=173.95 Aligned_cols=146 Identities=18% Similarity=0.256 Sum_probs=103.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-C------cccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P------VAMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~------~~~~i~~~i~----------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| + +..++++.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 109 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRA 109 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcH
Confidence 589999999999999999999999999999998865321 12333 1 2234555432
Q ss_pred -----HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHh------cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025642 59 -----LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (250)
Q Consensus 59 -----~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~------~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~ 125 (250)
+.++++.+++....... ..+.. .+++++.||++++ . +|+++|+||||+ ||+.++..+. +++++
T Consensus 110 ~~~~~~~~~l~~~~l~~~~~~~-~~~LSgGe~qrv~la~al~~~~~~~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 185 (258)
T PRK13548 110 EDDALVAAALAQVDLAHLAGRD-YPQLSGGEQQRVQLARVLAQLWEPDG--PPRWLLLDEPTSALDLAHQHHVL-RLARQ 185 (258)
T ss_pred HHHHHHHHHHHHcCCHhHhcCC-cccCCHHHHHHHHHHHHHhcccccCC--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 34566777775421111 01111 1334499999999 5 899999999999 9999999988 88888
Q ss_pred HH-hCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 126 LK-SRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 126 l~-~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++ +.|.+|+++ +|.......+++.++..
T Consensus 186 ~~~~~~~tiii~----sH~~~~~~~~~d~i~~l 214 (258)
T PRK13548 186 LAHERGLAVIVV----LHDLNLAARYADRIVLL 214 (258)
T ss_pred HHHhcCCEEEEE----ECCHHHHHHhcCEEEEE
Confidence 87 567887666 47776666666655444
No 121
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.87 E-value=5.1e-22 Score=174.48 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=104.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--------------------cCCCCC-Cc------ccChhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-PV------AMDIREL 56 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--------------------~~~~~y-~~------~~~i~~~ 56 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. .+.+.| ++ ..+++++
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~en 112 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLEN 112 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHH
Confidence 68999999999999999999999999999999886542 123444 22 2455555
Q ss_pred hh-----------------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHH
Q 025642 57 IS-----------------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (250)
Q Consensus 57 i~-----------------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~ 117 (250)
+. +.++++++|+..........+.. .+++++.||++++. +|+++|+|||++ ||+.++..
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~ 190 (257)
T PRK10619 113 VMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM--EPEVLLFDEPTSALDPELVGE 190 (257)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHH
Confidence 42 34567788886431000001111 12334999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 118 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 118 i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+. ++++++++.|.+++++. |.......+++.++.
T Consensus 191 l~-~~l~~l~~~g~tiiivs----H~~~~~~~~~d~i~~ 224 (257)
T PRK10619 191 VL-RIMQQLAEEGKTMVVVT----HEMGFARHVSSHVIF 224 (257)
T ss_pred HH-HHHHHHHhcCCEEEEEe----CCHHHHHHhcCEEEE
Confidence 88 88899877788887664 666655566555443
No 122
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.87 E-value=6e-22 Score=174.95 Aligned_cols=145 Identities=15% Similarity=0.204 Sum_probs=102.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc----------cCCCCC-C--------cccChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-P--------VAMDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~----------~~~~~y-~--------~~~~i~~~i~------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. .+.+.| + +..++++.+.
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 118 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL 118 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999999999999986542 122333 1 2234444321
Q ss_pred -----------HHHHHHHhCCCC-CCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 -----------LEDVMEELGLGP-NGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 -----------~~~vm~~~~L~~-~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
+.++++.+|+.. ..... ..+.. .+.+++.||++++. +|+++|+|||++ ||+.++..+. ++++
T Consensus 119 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~LSgGe~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l~-~~l~ 194 (265)
T TIGR02769 119 TSLDESEQKARIAELLDMVGLRSEDADKL-PRQLSGGQLQRINIARALAV--KPKLIVLDEAVSNLDMVLQAVIL-ELLR 194 (265)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhhhhCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHH
Confidence 456677888852 11110 01111 12344999999999 999999999999 9999999988 8888
Q ss_pred HHHhC-CCeEEEEEeccccccccHHHHHHhhHH
Q 025642 125 HLKSR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 125 ~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++. |.+++++. |.......+++.++.
T Consensus 195 ~~~~~~g~tiiivs----H~~~~~~~~~d~i~~ 223 (265)
T TIGR02769 195 KLQQAFGTAYLFIT----HDLRLVQSFCQRVAV 223 (265)
T ss_pred HHHHhcCcEEEEEe----CCHHHHHHHhcEEEE
Confidence 88754 78887663 666655666554443
No 123
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.87 E-value=7.3e-22 Score=170.49 Aligned_cols=144 Identities=16% Similarity=0.194 Sum_probs=98.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--------cCCCCC-Cc------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-PV------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--------~~~~~y-~~------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| ++ ..++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 107 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRS 107 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcch
Confidence 58999999999999999999999999999999886542 123444 22 234555443
Q ss_pred ---HHHHHHHhC-CCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CC
Q 025642 59 ---LEDVMEELG-LGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NF 131 (250)
Q Consensus 59 ---~~~vm~~~~-L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~ 131 (250)
.+++++.++ ++...... ..+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++++ +.
T Consensus 108 ~~~~~~~l~~~~~l~~~~~~~-~~~LS~G~~qrv~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~~ 183 (230)
T TIGR03410 108 RKIPDEIYELFPVLKEMLGRR-GGDLSGGQQQQLAIARALVT--RPKLLLLDEPTEGIQPSIIKDIG-RVIRRLRAEGGM 183 (230)
T ss_pred HHHHHHHHHHHHhHHHHhhCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHHHcCCc
Confidence 233444444 22211000 00111 12234999999999 999999999999 9999999998 888888764 78
Q ss_pred eEEEEEeccccccccHHHHHHhhH
Q 025642 132 NVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 132 ~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
+++++. |.......+++.++
T Consensus 184 tii~~s----H~~~~~~~~~d~v~ 203 (230)
T TIGR03410 184 AILLVE----QYLDFARELADRYY 203 (230)
T ss_pred EEEEEe----CCHHHHHHhCCEEE
Confidence 886663 66665555555443
No 124
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=4.7e-21 Score=162.42 Aligned_cols=130 Identities=9% Similarity=0.049 Sum_probs=95.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-------CcccChhhhhh-----------H
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------L 59 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-------~~~~~i~~~i~-----------~ 59 (250)
+++|+||||||||||+++|+|+.+|++|+|.++|.+... +.+.| .+..++++.+. +
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~ 108 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGI 108 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHH
Confidence 589999999999999999999999999999999876421 12332 23345666543 4
Q ss_pred HHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 60 EDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 60 ~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
.++++.++++....... .+.. .+.+++.||++++. +|+++|+|||++ +|+.++..+. ++++++++++.+++++.
T Consensus 109 ~~~l~~~~l~~~~~~~~-~~LS~G~~~rv~laral~~--~p~~lilDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~s 184 (200)
T PRK13540 109 TELCRLFSLEHLIDYPC-GLLSSGQKRQVALLRLWMS--KAKLWLLDEPLVALDELSLLTII-TKIQEHRAKGGAVLLTS 184 (200)
T ss_pred HHHHHHcCCchhhhCCh-hhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHcCCEEEEEe
Confidence 56777777754211110 0111 12334999999999 999999999999 9999999988 88888876678876663
No 125
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.9e-22 Score=173.72 Aligned_cols=146 Identities=16% Similarity=0.205 Sum_probs=103.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-------cCCCCC-Ccc-----cChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PVA-----MDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-------~~~~~y-~~~-----~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| +++ .++++.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~ 110 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVD 110 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHH
Confidence 58999999999999999999999999999999987642 122333 222 24444332
Q ss_pred HHHHHHHhCCCC-CCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEE
Q 025642 59 LEDVMEELGLGP-NGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVC 134 (250)
Q Consensus 59 ~~~vm~~~~L~~-~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~vi 134 (250)
+.++++.+++.+ .... ...+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. ++++++++ .|.+++
T Consensus 111 ~~~~l~~~~l~~~~~~~-~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tii 186 (241)
T PRK14250 111 VEYYLSIVGLNKEYATR-DVKNLSGGEAQRVSIARTLAN--NPEVLLLDEPTSALDPTSTEIIE-ELIVKLKNKMNLTVI 186 (241)
T ss_pred HHHHHHHcCCCHHHhhC-CcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCEEE
Confidence 456777888852 1111 011111 23344999999999 999999999999 9999999888 88888876 488887
Q ss_pred EEEeccccccccHHHHHHhhHHh
Q 025642 135 AVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 135 ~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++ +|...+...+++.++..
T Consensus 187 ~~----sH~~~~~~~~~d~i~~l 205 (241)
T PRK14250 187 WI----THNMEQAKRIGDYTAFL 205 (241)
T ss_pred EE----eccHHHHHHhCCEEEEE
Confidence 66 36666555666655443
No 126
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.87 E-value=1.3e-21 Score=170.12 Aligned_cols=144 Identities=16% Similarity=0.218 Sum_probs=100.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-C-------cccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-P-------VAMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-~-------~~~~i~~~i~----------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| + +..++++.+.
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~ 128 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA 128 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHH
Confidence 689999999999999999999999999999998865311 12333 1 2234544432
Q ss_pred -----HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025642 59 -----LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (250)
Q Consensus 59 -----~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~ 130 (250)
+.++++.+++.+...... .+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++++ +
T Consensus 129 ~~~~~~~~~l~~~gl~~~~~~~~-~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 204 (236)
T cd03267 129 RFKKRLDELSELLDLEELLDTPV-RQLSLGQRMRAEIAAALLH--EPEILFLDEPTIGLDVVAQENIR-NFLKEYNRERG 204 (236)
T ss_pred HHHHHHHHHHHHcCChhHhcCCh-hhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCC
Confidence 244566667754211110 1111 12334899999999 999999999999 9999999999 888888654 7
Q ss_pred CeEEEEEeccccccccHHHHHHhhH
Q 025642 131 FNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 131 ~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
.+++++. |.......+++.++
T Consensus 205 ~tiiivs----H~~~~~~~~~d~i~ 225 (236)
T cd03267 205 TTVLLTS----HYMKDIEALARRVL 225 (236)
T ss_pred CEEEEEe----cCHHHHHHhCCEEE
Confidence 7876663 66655555555443
No 127
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.87 E-value=5.6e-22 Score=170.88 Aligned_cols=146 Identities=16% Similarity=0.209 Sum_probs=101.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-----CCCCceEEEeecCCcc---------CCCCC-Cc-----ccChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l-----~~~~G~i~i~~~dp~~---------~~~~y-~~-----~~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|++ +|++|+|.+.|.+... ..++| ++ ..++++++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~ 107 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRL 107 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHHhHHHh
Confidence 58999999999999999999999 9999999999876421 22333 22 234544432
Q ss_pred ------------HHHHHHHhCCCCCCCchh-hhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNGGLIY-CMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g~~~~-~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
+.++++.+|+.+...... ..+... +++++.||++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 108 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l 184 (227)
T cd03260 108 HGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN--EPEVLLLDEPTSALDPISTAKIE-ELI 184 (227)
T ss_pred cCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHH
Confidence 345667777764311110 011111 2344999999999 999999999999 9999999998 888
Q ss_pred HHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 124 ~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++++++ .+++++ +|.......+++.++..
T Consensus 185 ~~~~~~-~tii~~----sH~~~~~~~~~d~i~~l 213 (227)
T cd03260 185 AELKKE-YTIVIV----THNMQQAARVADRTAFL 213 (227)
T ss_pred HHHhhC-cEEEEE----eccHHHHHHhCCEEEEE
Confidence 888765 666555 46666555665554443
No 128
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.87 E-value=9.1e-22 Score=182.23 Aligned_cols=152 Identities=17% Similarity=0.161 Sum_probs=111.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeec----CCc-----------cCCCCC-------CcccChhhhhh---
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL----DPA-----------AENFDY-------PVAMDIRELIS--- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~----dp~-----------~~~~~y-------~~~~~i~~~i~--- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|. +.. ...+.| .+..++++++.
T Consensus 52 i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~ 131 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGL 131 (382)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHH
Confidence 57999999999999999999999999999999885 321 023333 23345665553
Q ss_pred -------------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 59 -------------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 59 -------------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
+.++++.+|+.+..... ..+... +++++.||++|+. +|+++|+|||++ ||+.++..+. +.+
T Consensus 132 ~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-~~~LSgGq~QRV~LARALa~--~P~ILLlDEPts~LD~~~r~~l~-~~L 207 (382)
T TIGR03415 132 EMQGMPEAERRKRVDEQLELVGLAQWADKK-PGELSGGMQQRVGLARAFAM--DADILLMDEPFSALDPLIRTQLQ-DEL 207 (382)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HHH
Confidence 45678888886543211 112222 2344999999999 999999999999 9999999998 888
Q ss_pred HHHHhC-CCeEEEEEeccccccccHHHHHHhhHHhhhhHhH
Q 025642 124 DHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (250)
Q Consensus 124 ~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~ 163 (250)
.+++++ +.+++++ +|.+.+..++++.++....+.+.
T Consensus 208 ~~l~~~~~~TII~i----THdl~e~~~l~DrI~vl~~G~iv 244 (382)
T TIGR03415 208 LELQAKLNKTIIFV----SHDLDEALKIGNRIAIMEGGRII 244 (382)
T ss_pred HHHHHhcCCEEEEE----eCCHHHHHHhCCEEEEEECCEEE
Confidence 888764 8888766 47777777777777666555443
No 129
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=5.3e-21 Score=161.47 Aligned_cols=130 Identities=13% Similarity=0.041 Sum_probs=93.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc---CCCCC-------CcccChhhhhh-----------HHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS-----------LEDV 62 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~---~~~~y-------~~~~~i~~~i~-----------~~~v 62 (250)
+++|+||||||||||+++|+|+.+|++|+|.+.|.+... ..+.| .+..++++.+. +.++
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~ 107 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAA 107 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHH
Confidence 589999999999999999999999999999999876421 11222 23345666553 3455
Q ss_pred HHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 63 MEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 63 m~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
++.+++.+..... ..+... +++++.+|++++. +|+++|+|||++ +|+.++..+. ++++...+.+.+++++.
T Consensus 108 l~~~~l~~~~~~~-~~~LS~G~~~rl~la~al~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~s 180 (195)
T PRK13541 108 IHYFKLHDLLDEK-CYSLSSGMQKIVAIARLIAC--QSDLWLLDEVETNLSKENRDLLN-NLIVMKANSGGIVLLSS 180 (195)
T ss_pred HHHcCCHhhhccC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 6677775421110 011111 2334899999999 999999999999 9999998888 77776656677876663
No 130
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=4.7e-21 Score=163.33 Aligned_cols=130 Identities=21% Similarity=0.204 Sum_probs=95.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc----cCCCCC-------CcccChhhhhh------------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDY-------PVAMDIRELIS------------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~----~~~~~y-------~~~~~i~~~i~------------~~ 60 (250)
+++|+||||||||||+++|+|+.+|++|+|.+.|.+.. ...+.| .+..++.+.+. +.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 109 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIA 109 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHH
Confidence 57999999999999999999999999999999886632 112222 12345555442 45
Q ss_pred HHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 61 DVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 61 ~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
++++.+|+.+..... ..+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++++|.+++++.
T Consensus 110 ~~l~~~~l~~~~~~~-~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~s 184 (207)
T PRK13539 110 AALEAVGLAPLAHLP-FGYLSAGQKRRVALARLLVS--NRPIWILDEPTAALDAAAVALFA-ELIRAHLAQGGIVIAAT 184 (207)
T ss_pred HHHHHcCCHHHHcCC-hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEe
Confidence 677778875421111 11111 12344899999999 999999999999 9999999998 88888776788876663
No 131
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.8e-22 Score=177.09 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=102.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| ++ ..++.+++.
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~ 114 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPR 114 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCH
Confidence 579999999999999999999999999999999976531 22344 22 234555543
Q ss_pred ------HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025642 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (250)
Q Consensus 59 ------~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~ 130 (250)
+.++++.+|+.+........-...+++++.||++++. +|+++|+|||++ ||+.++..++ +++++++++ |
T Consensus 115 ~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~~~ 191 (279)
T PRK13635 115 EEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLAL--QPDIIILDEATSMLDPRGRREVL-ETVRQLKEQKG 191 (279)
T ss_pred HHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHcCC
Confidence 4556777788654211111011112334999999999 999999999999 9999999999 889888765 7
Q ss_pred CeEEEEEeccccccccHHHHHHhhHHh
Q 025642 131 FNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 131 ~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
.+++++. |...... .++.++..
T Consensus 192 ~tilivs----H~~~~~~-~~d~i~~l 213 (279)
T PRK13635 192 ITVLSIT----HDLDEAA-QADRVIVM 213 (279)
T ss_pred CEEEEEe----cCHHHHH-cCCEEEEE
Confidence 8887663 5554333 24444433
No 132
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=8.2e-22 Score=174.40 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=121.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeec---CCc-----cCCCCC-------CcccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL---DPA-----AENFDY-------PVAMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~---dp~-----~~~~~y-------~~~~~i~~~i~---------- 58 (250)
.++++|||||||||++++|+|+..|+.|.|.++|. |.. ..++++ ++.++|.++|.
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p 109 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERP 109 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCC
Confidence 47899999999999999999999999999999998 542 233443 45667777765
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
++++++.++|+..+ ..|...... +.+++++||||+. +|++|++|||+. +|...+.++- +-++++.+
T Consensus 110 ~~~~~r~rv~elL~lvqL~~la-~ryP~QLSGGQrQRVALARALA~--eP~vLLLDEPf~ALDa~vr~~lr-~wLr~~~~ 185 (345)
T COG1118 110 SEAEIRARVEELLRLVQLEGLA-DRYPAQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RWLRKLHD 185 (345)
T ss_pred ChhhHHHHHHHHHHHhcccchh-hcCchhcChHHHHHHHHHHHhhc--CCCeEeecCCchhhhHHHHHHHH-HHHHHHHH
Confidence 77888888887764 223333332 3455999999999 999999999999 9999998877 66666655
Q ss_pred C-CCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeecCchhhhc
Q 025642 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 179 (250)
Q Consensus 129 ~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK~Dl~~ 179 (250)
+ |.+++.|. |+..+..+++++++....+.+ +.+.++.|...
T Consensus 186 ~~~~ttvfVT----HD~eea~~ladrvvvl~~G~I------eqvg~p~ev~~ 227 (345)
T COG1118 186 RLGVTTVFVT----HDQEEALELADRVVVLNQGRI------EQVGPPDEVYD 227 (345)
T ss_pred hhCceEEEEe----CCHHHHHhhcceEEEecCCee------eeeCCHHHHhc
Confidence 4 88887774 888888888887776655543 34445555543
No 133
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.86 E-value=5.3e-22 Score=165.65 Aligned_cols=140 Identities=18% Similarity=0.250 Sum_probs=97.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhh-HHHHHHHhCCCCCCCchhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~-~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+....... ..+..+. +.++++.+|+.+........-...
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~-----~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK-----ELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHH-----HHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 5789999999999999999999999999999998765321100 1111111 223777888764321110001112
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEEEeccccccccHHHHHHhhH
Q 025642 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 83 ~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++++ +.+++++. |...+...+++.++
T Consensus 102 ~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~tiii~s----h~~~~~~~~~d~~~ 169 (180)
T cd03214 102 ERQRVLLARALAQ--EPPILLLDEPTSHLDIAHQIELL-ELLRRLARERGKTVVMVL----HDLNLAARYADRVI 169 (180)
T ss_pred HHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEe----CCHHHHHHhCCEEE
Confidence 2344899999999 999999999999 9999999988 888888765 77776553 66555555555443
No 134
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.86 E-value=2e-21 Score=180.75 Aligned_cols=149 Identities=13% Similarity=0.194 Sum_probs=117.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc---------------cCCCCCCcccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------------AENFDYPVAMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~---------------~~~~~y~~~~~i~~~i~---------- 58 (250)
+++++|.||||||||+++|.|+++|++|+|+++|+... -+++...+.+++.|++-
T Consensus 32 IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~ 111 (501)
T COG3845 32 IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGL 111 (501)
T ss_pred EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccc
Confidence 68999999999999999999999999999999996531 14455556666666653
Q ss_pred ---------HHHHHHHhCCCCCC-CchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g-~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
++++++++|+.-+. ..+.++. ...++++.|.++|.. ++++|||||||+ |-|....+++ .++++++
T Consensus 112 ~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLs-VG~qQRVEIlKaLyr--~a~iLILDEPTaVLTP~E~~~lf-~~l~~l~ 187 (501)
T COG3845 112 IDRRQARARIKELSERYGLPVDPDAKVADLS-VGEQQRVEILKALYR--GARLLILDEPTAVLTPQEADELF-EILRRLA 187 (501)
T ss_pred cCHHHHHHHHHHHHHHhCCCCCccceeecCC-cchhHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 77889999986432 2222222 123455999999999 999999999999 9999999999 9999999
Q ss_pred hCCCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 128 ~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
++|++|+.+. |.+.+...+++++-..-.+
T Consensus 188 ~~G~tIi~IT----HKL~Ev~~iaDrvTVLR~G 216 (501)
T COG3845 188 AEGKTIIFIT----HKLKEVMAIADRVTVLRRG 216 (501)
T ss_pred HCCCEEEEEe----ccHHHHHHhhCeeEEEeCC
Confidence 9999998774 8888888887766554444
No 135
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.86 E-value=1.4e-21 Score=163.42 Aligned_cols=135 Identities=13% Similarity=0.191 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Cccc---ChhhhhhHHHHHHHhCCCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PVAM---DIRELISLEDVMEELGLGPN 71 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~~~---~i~~~i~~~~vm~~~~L~~~ 71 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| +++. ......++.+.+.... .-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~-~LS 106 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS-LLS 106 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh-hcC
Confidence 579999999999999999999999999999999876421 22344 2221 1111122222221110 011
Q ss_pred CCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHH
Q 025642 72 GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (250)
Q Consensus 72 g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~ 150 (250)
+ .+++++.||++++. +|+++|+|||++ +|+.++..+. ++++++++++.+++++ +|...+..++
T Consensus 107 ~---------G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~----sh~~~~~~~~ 170 (182)
T cd03215 107 G---------GNQQKVVLARWLAR--DPRVLILDEPTRGVDVGAKAEIY-RLIRELADAGKAVLLI----SSELDELLGL 170 (182)
T ss_pred H---------HHHHHHHHHHHHcc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eCCHHHHHHh
Confidence 1 12344899999999 999999999999 9999999998 8888887667787665 3666666666
Q ss_pred HHhhH
Q 025642 151 ISGCM 155 (250)
Q Consensus 151 ~s~~l 155 (250)
++.++
T Consensus 171 ~d~v~ 175 (182)
T cd03215 171 CDRIL 175 (182)
T ss_pred CCEEE
Confidence 65443
No 136
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=5.9e-22 Score=177.16 Aligned_cols=150 Identities=16% Similarity=0.122 Sum_probs=104.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc------------cCCCCC-Ccc-------cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------------AENFDY-PVA-------MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~------------~~~~~y-~~~-------~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| +++ .++++.+.
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~ 118 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN 118 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH
Confidence 58999999999999999999999999999999886531 122344 221 13444332
Q ss_pred -----------HHHHHHHhCCC-CCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 -----------LEDVMEELGLG-PNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 -----------~~~vm~~~~L~-~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
+.++++.+++. ...... ..+.. .+++++.||++++. +|+++|+|||++ ||+.++..+. ++++
T Consensus 119 ~~~~~~~~~~~~~~ll~~~~L~~~~~~~~-~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~ 194 (289)
T PRK13645 119 LGENKQEAYKKVPELLKLVQLPEDYVKRS-PFELSGGQKRRVALAGIIAM--DGNTLVLDEPTGGLDPKGEEDFI-NLFE 194 (289)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhHhcCC-hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHH
Confidence 33566677773 211110 01111 12344999999999 999999999999 9999999988 8888
Q ss_pred HHHh-CCCeEEEEEeccccccccHHHHHHhhHHhhhhH
Q 025642 125 HLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 125 ~l~~-~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (250)
++.+ .|.+++++ +|...+...+++.++....+.
T Consensus 195 ~~~~~~~~tiiii----sH~~~~~~~~~d~i~~l~~G~ 228 (289)
T PRK13645 195 RLNKEYKKRIIMV----THNMDQVLRIADEVIVMHEGK 228 (289)
T ss_pred HHHHhcCCEEEEE----ecCHHHHHHhCCEEEEEECCE
Confidence 8865 47888666 376666667766665554443
No 137
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=9.4e-22 Score=170.63 Aligned_cols=145 Identities=16% Similarity=0.191 Sum_probs=99.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Cc------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| ++ ..++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 112 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQ 112 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhH
Confidence 589999999999999999999999999999999876421 12333 22 234555442
Q ss_pred ----HHHHHHHh-CCCCCCCchhhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025642 59 ----LEDVMEEL-GLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (250)
Q Consensus 59 ----~~~vm~~~-~L~~~g~~~~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~ 130 (250)
++++++.+ ++.+.... ....+ .+++++.||++++. +|+++|+||||+ +|+.++..+. +++++++++|
T Consensus 113 ~~~~~~~~l~~~~~l~~~~~~--~~~~LS~G~~qrl~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~ 187 (237)
T PRK11614 113 FQERIKWVYELFPRLHERRIQ--RAGTMSGGEQQMLAIGRALMS--QPRLLLLDEPSLGLAPIIIQQIF-DTIEQLREQG 187 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHhC--chhhCCHHHHHHHHHHHHHHh--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHCC
Confidence 22333444 23221000 01111 12334999999999 999999999999 9999999988 8888887778
Q ss_pred CeEEEEEeccccccccHHHHHHhhHHh
Q 025642 131 FNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 131 ~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
.+++++ +|...+..++++.++..
T Consensus 188 ~tiii~----sH~~~~~~~~~d~i~~l 210 (237)
T PRK11614 188 MTIFLV----EQNANQALKLADRGYVL 210 (237)
T ss_pred CEEEEE----eCcHHHHHhhCCEEEEE
Confidence 887665 46666666666654433
No 138
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.86 E-value=9.2e-22 Score=170.17 Aligned_cols=146 Identities=13% Similarity=0.147 Sum_probs=101.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC----CCceEEEeecCCcc-----CCCCC-C--------cccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDY-P--------VAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~----~~G~i~i~~~dp~~-----~~~~y-~--------~~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++| ++|+|.+.|.+... ..+.| + +..++.+.+.
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~ 93 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLG 93 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcC
Confidence 6899999999999999999999999 89999999876421 22333 1 1223332211
Q ss_pred ---------HHHHHHHhCCCC---CCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGP---NGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 ---------~~~vm~~~~L~~---~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
+.++++.+++.. ..... ..+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. ++++
T Consensus 94 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~LS~G~~qrv~laral~~--~p~vllLDEPt~~LD~~~~~~l~-~~l~ 169 (230)
T TIGR02770 94 KLSKQARALILEALEAVGLPDPEEVLKKY-PFQLSGGMLQRVMIALALLL--EPPFLIADEPTTDLDVVNQARVL-KLLR 169 (230)
T ss_pred ccHHHHHHHHHHHHHHcCCCchHHHHhCC-hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-HHHH
Confidence 455677777752 11000 01111 12334999999999 999999999999 9999999988 8888
Q ss_pred HHHhC-CCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 125 HLKSR-NFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 125 ~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+++++ +.+++++ +|...+...+++.++..
T Consensus 170 ~~~~~~~~tiii~----sH~~~~~~~~~d~i~~l 199 (230)
T TIGR02770 170 ELRQLFGTGILLI----THDLGVVARIADEVAVM 199 (230)
T ss_pred HHHHhcCCEEEEE----eCCHHHHHHhCCEEEEE
Confidence 88654 7788666 37766666666554433
No 139
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1e-21 Score=162.94 Aligned_cols=129 Identities=16% Similarity=0.266 Sum_probs=91.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-CcccChhhhhhHHHHHHHhCCCCCCCchh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIY 76 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-~~~~~i~~~i~~~~vm~~~~L~~~g~~~~ 76 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| +++.......++.+.+. -.+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-----LS~---- 98 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK-----LSG---- 98 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-----cCH----
Confidence 578999999999999999999999999999998875421 22334 33222211112222221 111
Q ss_pred hhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHh
Q 025642 77 CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (250)
Q Consensus 77 ~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~ 153 (250)
.+.+++.||++++. +|+++|+|||++ +|+.++..+. ++++++.++|.+++++. |.......+++.
T Consensus 99 -----G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~t----h~~~~~~~~~d~ 164 (173)
T cd03230 99 -----GMKQRLALAQALLH--DPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILLSS----HILEEAERLCDR 164 (173)
T ss_pred -----HHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEC----CCHHHHHHhCCE
Confidence 12345899999999 999999999999 9999999998 88888876677776553 555444444443
No 140
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2e-21 Score=179.98 Aligned_cols=149 Identities=12% Similarity=0.072 Sum_probs=107.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+.+|++|+|.++|.+.. ...++| .+..++.+++.
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~ 126 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEI 126 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHH
Confidence 57899999999999999999999999999999987642 223333 34456666654
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~ 132 (250)
+.++++.+++.+..... ..+.. .++++++||++|+. +|+++++|||++ ||...+..+. +.++++.+ .|.+
T Consensus 127 ~~~v~~~l~~l~L~~~~~~~-~~~LSgGq~QRVaLARAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~t 202 (377)
T PRK11607 127 ASRVNEMLGLVHMQEFAKRK-PHQLSGGQRQRVALARSLAK--RPKLLLLDEPMGALDKKLRDRMQ-LEVVDILERVGVT 202 (377)
T ss_pred HHHHHHHHHHcCCchhhcCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCE
Confidence 45677788887543211 11122 23445999999999 999999999999 9999999988 66666654 5888
Q ss_pred EEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
+++| +|...+...+++.++....+
T Consensus 203 ii~v----THd~~ea~~laDri~vl~~G 226 (377)
T PRK11607 203 CVMV----THDQEEAMTMAGRIAIMNRG 226 (377)
T ss_pred EEEE----cCCHHHHHHhCCEEEEEeCC
Confidence 7766 47766666666655544333
No 141
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=8.3e-22 Score=171.90 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=116.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCC-----------Cc---ccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-----------PV---AMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y-----------~~---~~~i~~~i~----------- 58 (250)
+++++|||||||||++|+++|++.|++|.|.+.|++|..+.-.| .+ +..+.+.+.
T Consensus 52 ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~ 131 (325)
T COG4586 52 IVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDD 131 (325)
T ss_pred EEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHH
Confidence 68999999999999999999999999999999999996522111 00 112222222
Q ss_pred -----HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCC
Q 025642 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF 131 (250)
Q Consensus 59 -----~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~ 131 (250)
.+..-+-+++++.-......-...++++..||.+|.+ +|+++++||||- ||..++..+. +++++.++ .+.
T Consensus 132 ~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh--~p~VLfLDEpTvgLDV~aq~~ir-~Flke~n~~~~a 208 (325)
T COG4586 132 EFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLH--PPKVLFLDEPTVGLDVNAQANIR-EFLKEYNEERQA 208 (325)
T ss_pred HHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcC--CCcEEEecCCccCcchhHHHHHH-HHHHHHHHhhCc
Confidence 3334445566643211100112234455899999999 999999999999 9999999988 99999875 477
Q ss_pred eEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCe
Q 025642 132 NVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (250)
Q Consensus 132 ~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~ 168 (250)
||+. .+|.+.|....|.++++...+.+.++.+.
T Consensus 209 TVll----TTH~~~di~~lc~rv~~I~~Gqlv~dg~l 241 (325)
T COG4586 209 TVLL----TTHIFDDIATLCDRVLLIDQGQLVFDGTL 241 (325)
T ss_pred eEEE----EecchhhHHHhhhheEEeeCCcEeecccH
Confidence 8754 46999999999999999888888776443
No 142
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.86 E-value=1.4e-21 Score=187.04 Aligned_cols=149 Identities=13% Similarity=0.166 Sum_probs=106.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--------cCCCCC-C------cccChhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-P------VAMDIRELI----------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--------~~~~~y-~------~~~~i~~~i----------- 57 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...++| + +..++++.+
T Consensus 32 ~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 111 (501)
T PRK10762 32 VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFG 111 (501)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccC
Confidence 58999999999999999999999999999999886542 122333 2 223444432
Q ss_pred ---------hHHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 58 ---------SLEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 58 ---------~~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
.+.++++++|++...... ..+.. .+++++.||++|+. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~l 187 (501)
T PRK10762 112 RIDWKKMYAEADKLLARLNLRFSSDKL-VGELSIGEQQMVEIAKVLSF--ESKVIIMDEPTDALTDTETESLF-RVIREL 187 (501)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCccCc-hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcCCCCHHHHHHHH-HHHHHH
Confidence 145677888887542111 11112 13344999999999 999999999999 9999999999 899998
Q ss_pred HhCCCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 127 ~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
+++|.+++++. |...+...+++.++....+
T Consensus 188 ~~~~~tvii~s----Hd~~~~~~~~d~i~~l~~G 217 (501)
T PRK10762 188 KSQGRGIVYIS----HRLKEIFEICDDVTVFRDG 217 (501)
T ss_pred HHCCCEEEEEe----CCHHHHHHhCCEEEEEeCC
Confidence 77788876653 6666666666665554433
No 143
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.86 E-value=9.7e-22 Score=172.15 Aligned_cols=144 Identities=16% Similarity=0.162 Sum_probs=100.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--------------------cCCCCC-C------cccChhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-P------VAMDIREL 56 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--------------------~~~~~y-~------~~~~i~~~ 56 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| + +..++.++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 107 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDN 107 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHH
Confidence 58999999999999999999999999999999886531 112333 1 22344443
Q ss_pred hh-----------------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHH
Q 025642 57 IS-----------------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (250)
Q Consensus 57 i~-----------------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~ 117 (250)
+. +.++++.+|+.+..... ..+.. .+.+++.||++++. +|+++|+|||++ ||+.++..
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~ 184 (252)
T TIGR03005 108 VTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-PAQLSGGQQQRVAIARALAM--RPKVMLFDEVTSALDPELVGE 184 (252)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-hhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHH
Confidence 32 34567777775421110 00111 12334999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhC-CCeEEEEEeccccccccHHHHHHhhH
Q 025642 118 VLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 118 i~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
+. ++++++.++ |.+++++. |...+...+++.++
T Consensus 185 l~-~~l~~~~~~~~~tiiivs----H~~~~~~~~~d~i~ 218 (252)
T TIGR03005 185 VL-NVIRRLASEHDLTMLLVT----HEMGFAREFADRVC 218 (252)
T ss_pred HH-HHHHHHHHhcCcEEEEEe----CCHHHHHHhcCEEE
Confidence 88 888888654 78887664 66655555555443
No 144
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.86 E-value=8.4e-22 Score=179.16 Aligned_cols=147 Identities=12% Similarity=0.090 Sum_probs=105.3
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCC-------CcccChhhhhh----------------
Q 025642 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS---------------- 58 (250)
Q Consensus 7 iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y-------~~~~~i~~~i~---------------- 58 (250)
|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| .+..++++++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 58999999999999999999999999999987642 123333 22345655543
Q ss_pred HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEE
Q 025642 59 LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCA 135 (250)
Q Consensus 59 ~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~vi~ 135 (250)
++++++.+++.+...... .+.. .++++++||++|+. +|+++|+|||++ ||+.++..+. ++++++.++ |.++++
T Consensus 81 ~~~~l~~~~l~~~~~~~~-~~LSgGq~qRvalaraL~~--~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~tiii 156 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKP-HQLSGGQQQRVALARALVF--KPKILLLDEPLSALDKKLRDQMQ-LELKTIQEQLGITFVF 156 (325)
T ss_pred HHHHHHHcCCcchhcCCh-hhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEE
Confidence 345677788865321111 1111 23344999999999 999999999999 9999999988 888888654 888876
Q ss_pred EEeccccccccHHHHHHhhHHhhhhH
Q 025642 136 VYLLDSQFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 136 v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (250)
+ +|...+...+++.++....+.
T Consensus 157 v----THd~~e~~~~~d~i~vl~~G~ 178 (325)
T TIGR01187 157 V----THDQEEAMTMSDRIAIMRKGK 178 (325)
T ss_pred E----eCCHHHHHHhCCEEEEEECCE
Confidence 6 376666666666655544443
No 145
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=9.9e-22 Score=163.75 Aligned_cols=131 Identities=20% Similarity=0.245 Sum_probs=91.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc---------CCCCC-CcccChhhhhhHHHHHHHhCCCCCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PVAMDIRELISLEDVMEELGLGPNGG 73 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~---------~~~~y-~~~~~i~~~i~~~~vm~~~~L~~~g~ 73 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| +++.......++.+.+. +.-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~---~~lS-- 102 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIA---LGLS-- 102 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHhee---ecCC--
Confidence 689999999999999999999999999999998865421 12333 22211111112222211 1111
Q ss_pred chhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEEEeccccccccHHHHH
Q 025642 74 LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (250)
Q Consensus 74 ~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~ 151 (250)
..+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++++ +.+++++. |......+++
T Consensus 103 -------~G~~qr~~la~al~~--~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~s----H~~~~~~~~~ 168 (178)
T cd03229 103 -------GGQQQRVALARALAM--DPDVLLLDEPTSALDPITRREVR-ALLKSLQAQLGITVVLVT----HDLDEAARLA 168 (178)
T ss_pred -------HHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEe----CCHHHHHHhc
Confidence 122345999999999 999999999999 9999999998 888888776 67776663 5555444444
Q ss_pred Hh
Q 025642 152 SG 153 (250)
Q Consensus 152 s~ 153 (250)
+.
T Consensus 169 d~ 170 (178)
T cd03229 169 DR 170 (178)
T ss_pred CE
Confidence 43
No 146
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.4e-21 Score=171.44 Aligned_cols=149 Identities=17% Similarity=0.293 Sum_probs=103.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-C------cccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P------VAMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~------~~~~i~~~i~----------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| + +..++.+++.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~ 109 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWG 109 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhcc
Confidence 589999999999999999999999999999998865321 12333 1 1234444332
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+++.+..... ..+.. .+.+++.||++++. +|+++|+|||++ +|+.++..+. +++++++
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~l~ 185 (255)
T PRK11231 110 RLSAEDNARVNQAMEQTRINHLADRR-LTDLSGGQRQRAFLAMVLAQ--DTPVVLLDEPTTYLDINHQVELM-RLMRELN 185 (255)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHcCC-cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 34456666765321110 00111 12334999999999 999999999999 9999999988 8888887
Q ss_pred hCCCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 128 ~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
++|.+++++ +|...+...+++.++....+
T Consensus 186 ~~~~tiii~----tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 186 TQGKTVVTV----LHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred HCCCEEEEE----ECCHHHHHHhcCEEEEEECC
Confidence 667887655 47777667777665544333
No 147
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.86 E-value=2e-21 Score=186.32 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=106.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Cc------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..++| ++ ..++.+.+.
T Consensus 39 ~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 118 (510)
T PRK15439 39 VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASM 118 (510)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHH
Confidence 589999999999999999999999999999999876421 12334 22 345655542
Q ss_pred --HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEE
Q 025642 59 --LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (250)
Q Consensus 59 --~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi 134 (250)
+.++++.+++........ .+.. .++++++||++|+. +|+++|+||||+ ||+.++..+. +++++++++|.+|+
T Consensus 119 ~~~~~~l~~~~l~~~~~~~~-~~LSgG~~qrv~la~aL~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii 194 (510)
T PRK15439 119 QKMKQLLAALGCQLDLDSSA-GSLEVADRQIVEILRGLMR--DSRILILDEPTASLTPAETERLF-SRIRELLAQGVGIV 194 (510)
T ss_pred HHHHHHHHHcCCCccccCCh-hhCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCEEE
Confidence 456788888865321111 1111 23345999999999 999999999999 9999999999 88988877788886
Q ss_pred EEEeccccccccHHHHHHhhHHhh
Q 025642 135 AVYLLDSQFITDVTKFISGCMASL 158 (250)
Q Consensus 135 ~v~l~d~~~~~d~~~~~s~~l~~~ 158 (250)
++. |.......+++.++...
T Consensus 195 ivt----Hd~~~~~~~~d~i~~l~ 214 (510)
T PRK15439 195 FIS----HKLPEIRQLADRISVMR 214 (510)
T ss_pred EEe----CCHHHHHHhCCEEEEEE
Confidence 663 55555555555554443
No 148
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.7e-21 Score=172.03 Aligned_cols=149 Identities=25% Similarity=0.362 Sum_probs=103.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-C------cccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P------VAMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~------~~~~i~~~i~----------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| + +..++.+++.
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 118 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALG 118 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCccccccccc
Confidence 579999999999999999999999999999999866421 12333 1 1223433322
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+++.+..... .-+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++
T Consensus 119 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~l~ 194 (265)
T PRK10575 119 RFGAADREKVEEAISLVGLKPLAHRL-VDSLSGGERQRAWIAMLVAQ--DSRCLLLDEPTSALDIAHQVDVL-ALVHRLS 194 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHhcCC-cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 34566677775321110 00111 12344999999999 999999999999 9999999998 8888886
Q ss_pred hC-CCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 128 ~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
++ |.+++++ +|.......+++.++....+
T Consensus 195 ~~~~~tiii~----sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 195 QERGLTVIAV----LHDINMAARYCDYLVALRGG 224 (265)
T ss_pred HhcCCEEEEE----eCCHHHHHHhCCEEEEEECC
Confidence 54 7887655 47776666666655444333
No 149
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.86 E-value=1.3e-21 Score=178.34 Aligned_cols=151 Identities=18% Similarity=0.234 Sum_probs=109.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC-C--------cccChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P--------VAMDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y-~--------~~~~i~~~i~------ 58 (250)
+++|+|+||||||||+++|+|+++|++|+|.+.|.+... ..+.| + +..++.+++.
T Consensus 49 ~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~ 128 (331)
T PRK15079 49 TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTY 128 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999999999999999977521 23333 2 2234544431
Q ss_pred ------------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
+.++++.+++.+.....+..+... +++++.||++|+. +|+++|+||||+ ||+.++.+++ ++++
T Consensus 129 ~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD~~~~~~i~-~lL~ 205 (331)
T PRK15079 129 HPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALIL--EPKLIICDEPVSALDVSIQAQVV-NLLQ 205 (331)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHH
Confidence 346677888854211111122222 2344999999999 999999999999 9999999999 8999
Q ss_pred HHHhC-CCeEEEEEeccccccccHHHHHHhhHHhhhhH
Q 025642 125 HLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 125 ~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (250)
+++++ |.++++| +|++.....+++.+++...+.
T Consensus 206 ~l~~~~~~til~i----THdl~~~~~~~dri~vl~~G~ 239 (331)
T PRK15079 206 QLQREMGLSLIFI----AHDLAVVKHISDRVLVMYLGH 239 (331)
T ss_pred HHHHHcCCEEEEE----eCCHHHHHHhCCEEEEEECCE
Confidence 98764 8888766 477776667766665544443
No 150
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.86 E-value=1.7e-21 Score=170.06 Aligned_cols=145 Identities=18% Similarity=0.228 Sum_probs=101.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-----CceEEEeecCCcc---------CCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~-----~G~i~i~~~dp~~---------~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++|+ +|+|.++|.+... +.+.| +++ .++.+++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~ 108 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRL 108 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhHHHh
Confidence 58999999999999999999999998 9999998876421 23444 221 34444332
Q ss_pred ------------HHHHHHHhCCCC----CCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 59 ------------LEDVMEELGLGP----NGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 59 ------------~~~vm~~~~L~~----~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
+.++++.+|+.+ .... ...+.. .+++++.||++++. +|+++|+|||++ +|+.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 184 (247)
T TIGR00972 109 HGIKDKKELDEIVEESLKKAALWDEVKDRLHD-SALGLSGGQQQRLCIARALAV--EPEVLLLDEPTSALDPIATGKIE- 184 (247)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCcchhhHhhC-CcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 345667778762 1100 001111 12344999999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++++++++ +.+++++ +|...+...+++.++..
T Consensus 185 ~~l~~~~~-~~tiiiv----sH~~~~~~~~~d~i~~l 216 (247)
T TIGR00972 185 ELIQELKK-KYTIVIV----THNMQQAARISDRTAFF 216 (247)
T ss_pred HHHHHHHh-cCeEEEE----ecCHHHHHHhCCEEEEE
Confidence 88888866 4666555 47666666666655443
No 151
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1e-21 Score=178.77 Aligned_cols=152 Identities=18% Similarity=0.171 Sum_probs=109.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC-Ccc--------cChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-PVA--------MDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y-~~~--------~~i~~~i~------ 58 (250)
+++|+|+||||||||+++|+|+++|++|+|.+.|.+... ..++| +|+ .++.+.+.
T Consensus 43 ~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~ 122 (327)
T PRK11308 43 TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN 122 (327)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc
Confidence 589999999999999999999999999999999976521 22344 222 23433221
Q ss_pred -----------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025642 59 -----------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (250)
Q Consensus 59 -----------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~ 125 (250)
+.++++.+|+.+.....+..+... +.+++.||++|+. +|++||+||||+ ||..++..++ +++++
T Consensus 123 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~--~P~lLilDEPts~LD~~~~~~i~-~lL~~ 199 (327)
T PRK11308 123 TSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALML--DPDVVVADEPVSALDVSVQAQVL-NLMMD 199 (327)
T ss_pred cCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHc--CCCEEEEECCCccCCHHHHHHHH-HHHHH
Confidence 567788888864321112112222 2345999999999 999999999999 9999999999 88888
Q ss_pred HHhC-CCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 126 l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
++++ |.++++|. |.+.....+++.+++...+.+
T Consensus 200 l~~~~g~til~iT----Hdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 200 LQQELGLSYVFIS----HDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred HHHHcCCEEEEEe----CCHHHHHHhCCEEEEEECCEE
Confidence 8764 88887664 777666667666655544443
No 152
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.3e-21 Score=173.73 Aligned_cols=135 Identities=17% Similarity=0.181 Sum_probs=97.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Cc-------ccChhhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV-------AMDIRELIS--------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~-------~~~i~~~i~--------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..++| ++ ..++.+++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~ 109 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLP 109 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCC
Confidence 589999999999999999999999999999999876521 12333 11 124444332
Q ss_pred -------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 -------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 -------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
+.++++.+|++...... ..+.. .+++++.||++++. +|+++|+||||+ +|+.++..+. +++++++++
T Consensus 110 ~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~ 185 (274)
T PRK13644 110 PIEIRKRVDRALAEIGLEKYRHRS-PKTLSGGQGQCVALAGILTM--EPECLIFDEVTSMLDPDSGIAVL-ERIKKLHEK 185 (274)
T ss_pred HHHHHHHHHHHHHHCCCHHHhcCC-cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhC
Confidence 44567777876432111 01111 23344999999999 999999999999 9999999988 888888767
Q ss_pred CCeEEEEEecccccccc
Q 025642 130 NFNVCAVYLLDSQFITD 146 (250)
Q Consensus 130 ~~~vi~v~l~d~~~~~d 146 (250)
|.+++++. |...+
T Consensus 186 g~til~~t----H~~~~ 198 (274)
T PRK13644 186 GKTIVYIT----HNLEE 198 (274)
T ss_pred CCEEEEEe----cCHHH
Confidence 88887663 55543
No 153
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.2e-21 Score=171.32 Aligned_cols=148 Identities=17% Similarity=0.315 Sum_probs=103.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc------ccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV------AMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~------~~~i~~~i~----------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 114 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFT 114 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccccccccc
Confidence 589999999999999999999999999999999876421 12333 11 223333321
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+++....... ..+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. ++++++.
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~L~~l~ 190 (265)
T PRK10253 115 RWRKEDEEAVTKAMQATGITHLADQS-VDTLSGGQRQRAWIAMVLAQ--ETAIMLLDEPTTWLDISHQIDLL-ELLSELN 190 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHhcCC-cccCChHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHHH
Confidence 34566777775421110 00111 12344999999999 999999999999 9999999998 8888887
Q ss_pred hC-CCeEEEEEeccccccccHHHHHHhhHHhhh
Q 025642 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (250)
Q Consensus 128 ~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (250)
++ |.+++++. |.......+++.++....
T Consensus 191 ~~~~~tiii~t----H~~~~~~~~~d~i~~l~~ 219 (265)
T PRK10253 191 REKGYTLAAVL----HDLNQACRYASHLIALRE 219 (265)
T ss_pred HhcCCEEEEEe----CCHHHHHHhCCEEEEEEC
Confidence 64 77876663 777666677665544433
No 154
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.86 E-value=1.9e-21 Score=172.14 Aligned_cols=146 Identities=16% Similarity=0.017 Sum_probs=100.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC-ccCCCCCCcccChhhhhh----------------HHHHHHHh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS----------------LEDVMEEL 66 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp-~~~~~~y~~~~~i~~~i~----------------~~~vm~~~ 66 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|... ..+...+.+..++.+++. ++++++.+
T Consensus 52 ~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFS 131 (264)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5799999999999999999999999999999987521 111222233344444432 23455566
Q ss_pred CCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccc
Q 025642 67 GLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 144 (250)
Q Consensus 67 ~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~ 144 (250)
++++..... ..+... +.+++.||++++. +|+++|+|||++ +|+.++..+. +++.++++.|.+++++. |..
T Consensus 132 ~l~~~~~~~-~~~LS~Gq~qrv~Laral~~--~p~iLlLDEPt~gLD~~~~~~l~-~~L~~~~~~g~tiIiis----H~~ 203 (264)
T PRK13546 132 ELGEFIYQP-VKKYSSGMRAKLGFSINITV--NPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQNKTIFFVS----HNL 203 (264)
T ss_pred CCchhhcCC-cccCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHHHHHHHCCCEEEEEc----CCH
Confidence 665432110 011111 2234899999999 999999999999 9999999988 88888876788887663 666
Q ss_pred ccHHHHHHhhHHh
Q 025642 145 TDVTKFISGCMAS 157 (250)
Q Consensus 145 ~d~~~~~s~~l~~ 157 (250)
.....+++.++..
T Consensus 204 ~~i~~~~d~i~~l 216 (264)
T PRK13546 204 GQVRQFCTKIAWI 216 (264)
T ss_pred HHHHHHcCEEEEE
Confidence 6556666655443
No 155
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.86 E-value=1.9e-21 Score=185.50 Aligned_cols=144 Identities=14% Similarity=0.173 Sum_probs=102.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc--------------ccChhhhh----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV--------------AMDIRELI---- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~--------------~~~i~~~i---- 57 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..++| ++ ..++++.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (490)
T PRK10938 31 SWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV 110 (490)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccch
Confidence 589999999999999999999999999999987765421 11333 11 12444443
Q ss_pred ----hHHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCC
Q 025642 58 ----SLEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (250)
Q Consensus 58 ----~~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~ 131 (250)
.++++++.+|+.+...... .+.. .++++++||++++. +|+++|+||||+ ||+.++..+. +++++++++|.
T Consensus 111 ~~~~~~~~~l~~~~l~~~~~~~~-~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~ 186 (490)
T PRK10938 111 KDPARCEQLAQQFGITALLDRRF-KYLSTGETRKTLLCQALMS--EPDLLILDEPFDGLDVASRQQLA-ELLASLHQSGI 186 (490)
T ss_pred hHHHHHHHHHHHcCCHhhhhCCc-ccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhcCC
Confidence 2567888898865321111 1111 13345999999999 999999999999 9999999999 89999877788
Q ss_pred eEEEEEeccccccccHHHHHHhhH
Q 025642 132 NVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 132 ~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
+++++. |.......+++.++
T Consensus 187 tvii~t----H~~~~~~~~~d~v~ 206 (490)
T PRK10938 187 TLVLVL----NRFDEIPDFVQFAG 206 (490)
T ss_pred eEEEEe----CCHHHHHhhCCEEE
Confidence 876653 44444444444443
No 156
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.5e-21 Score=173.03 Aligned_cols=144 Identities=15% Similarity=0.240 Sum_probs=101.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----CCCCC-Ccc--------cChhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PVA--------MDIRELI------------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----~~~~y-~~~--------~~i~~~i------------- 57 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| +++ ..+++.+
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 114 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRR 114 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccC
Confidence 589999999999999999999999999999998865311 12333 111 0122211
Q ss_pred -------hHHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 58 -------SLEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 58 -------~~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
.+.++++.+|+.+...... .+.. .+.+++.||++++. +|+++|+|||++ ||+.++..+. ++++++++
T Consensus 115 ~~~~~~~~~~~~l~~~gl~~~~~~~~-~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~ 190 (272)
T PRK15056 115 AKKRDRQIVTAALARVDMVEFRHRQI-GELSGGQKKRVFLARAIAQ--QGQVILLDEPFTGVDVKTEARII-SLLRELRD 190 (272)
T ss_pred CCHHHHHHHHHHHHHcCChhHhcCCc-ccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHh
Confidence 1455677788764321110 1111 12344999999999 999999999999 9999999998 88888876
Q ss_pred CCCeEEEEEeccccccccHHHHHHhhH
Q 025642 129 RNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
+|.+++++ +|.......+++.++
T Consensus 191 ~g~tviiv----sH~~~~~~~~~d~v~ 213 (272)
T PRK15056 191 EGKTMLVS----THNLGSVTEFCDYTV 213 (272)
T ss_pred CCCEEEEE----eCCHHHHHHhCCEEE
Confidence 68887665 366666666666543
No 157
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.5e-21 Score=185.55 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=103.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Cc------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..++| ++ ..++++++.
T Consensus 33 ~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 112 (510)
T PRK09700 33 IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVC 112 (510)
T ss_pred EEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccc
Confidence 589999999999999999999999999999998865421 22444 22 223333321
Q ss_pred -------------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 59 -------------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 59 -------------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
+.++++.+|+........ .+.. .+++++.||++|+. +|+++|+||||+ ||+.++..++ +++
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~LSgG~~qrv~ia~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l 188 (510)
T PRK09700 113 GVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-ANLSISHKQMLEIAKTLML--DAKVIIMDEPTSSLTNKEVDYLF-LIM 188 (510)
T ss_pred cccccCHHHHHHHHHHHHHHcCCCCCcccch-hhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHH
Confidence 345677788865321111 1111 13345999999999 999999999999 9999999999 899
Q ss_pred HHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 124 ~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++++++|.+++++. |.......+++.++..
T Consensus 189 ~~l~~~g~tiiivs----Hd~~~~~~~~d~v~~l 218 (510)
T PRK09700 189 NQLRKEGTAIVYIS----HKLAEIRRICDRYTVM 218 (510)
T ss_pred HHHHhCCCEEEEEe----CCHHHHHHhCCEEEEE
Confidence 99877788887664 5555555555544433
No 158
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.3e-21 Score=185.84 Aligned_cols=148 Identities=14% Similarity=0.164 Sum_probs=106.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Cc---------ccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV---------AMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~---------~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..++| ++ ..++.+.+.
T Consensus 291 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~ 370 (510)
T PRK09700 291 ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKD 370 (510)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccccccc
Confidence 589999999999999999999999999999998865421 22333 22 123433321
Q ss_pred ------------------HHHHHHHhCCC-CCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHH
Q 025642 59 ------------------LEDVMEELGLG-PNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (250)
Q Consensus 59 ------------------~~~vm~~~~L~-~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~ 117 (250)
++++++.+++. .... ....+... +++++.||++++. +|+++|+||||+ ||+.++..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~~~ 447 (510)
T PRK09700 371 GGYKGAMGLFHEVDEQRTAENQRELLALKCHSVN-QNITELSGGNQQKVLISKWLCC--CPEVIIFDEPTRGIDVGAKAE 447 (510)
T ss_pred ccccccccccChHHHHHHHHHHHHhcCCCCCCcc-CccccCChHHHHHHHHHHHHhc--CCCEEEECCCCCCcCHHHHHH
Confidence 34677888885 3211 11112222 3344999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhh
Q 025642 118 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (250)
Q Consensus 118 i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (250)
++ +++++++++|.+++++ +|.......+++.++....
T Consensus 448 l~-~~l~~l~~~g~tvi~v----sHd~~~~~~~~d~i~~l~~ 484 (510)
T PRK09700 448 IY-KVMRQLADDGKVILMV----SSELPEIITVCDRIAVFCE 484 (510)
T ss_pred HH-HHHHHHHHCCCEEEEE----cCCHHHHHhhCCEEEEEEC
Confidence 99 8999987778888766 4777766777666554433
No 159
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.85 E-value=2.6e-21 Score=182.43 Aligned_cols=157 Identities=17% Similarity=0.216 Sum_probs=121.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc---------------CCCCCCcccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~---------------~~~~y~~~~~i~~~i~---------- 58 (250)
+++++|.||||||||+|+|+|.++|++|+|.++|..... +.+...|+++|.+++-
T Consensus 36 V~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g 115 (500)
T COG1129 36 VHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFG 115 (500)
T ss_pred EEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCC
Confidence 689999999999999999999999999999999864311 3334455666666653
Q ss_pred ----------HHHHHHHhCCCCC-CCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 59 ----------LEDVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 59 ----------~~~vm~~~~L~~~-g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
+.++++++++... ...+..+.--.+++ +.||+|+.. +++++||||||+ |.......++ +++++|
T Consensus 116 ~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~-VeIArAl~~--~arllIlDEPTaaLt~~E~~~Lf-~~ir~L 191 (500)
T COG1129 116 LIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQM-VEIARALSF--DARVLILDEPTAALTVKETERLF-DLIRRL 191 (500)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHH-HHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 6677888887411 11111112222333 999999999 999999999999 9999999999 999999
Q ss_pred HhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCe
Q 025642 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (250)
Q Consensus 127 ~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~ 168 (250)
+++|.+++.| ||.+.+...+++++...-.+.+.-..|.
T Consensus 192 k~~Gv~ii~I----SHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 192 KAQGVAIIYI----SHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HhCCCEEEEE----cCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999877 5999999999988887777766555553
No 160
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.4e-21 Score=166.14 Aligned_cols=146 Identities=13% Similarity=0.090 Sum_probs=103.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCC-C------cccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-P------VAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y-~------~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+++|.+|+|.+.|.+.. ...+.| + +..++++.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~ 107 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEI 107 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHH
Confidence 68999999999999999999999999999999887542 123333 1 1234444432
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeE
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNV 133 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~v 133 (250)
+.++++.+|+.+.......--...+.+++.||++++. +|+++|+|||+. +|+.++..+. +++++++++ |.++
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~~~~~ti 184 (232)
T cd03300 108 KERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVN--EPKVLLLDEPLGALDLKLRKDMQ-LELKRLQKELGITF 184 (232)
T ss_pred HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEE
Confidence 3456777888653211111011112334999999999 999999999999 9999999988 888888764 7888
Q ss_pred EEEEeccccccccHHHHHHhhHH
Q 025642 134 CAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+++. |...+...+++.++.
T Consensus 185 ii~s----h~~~~~~~~~d~i~~ 203 (232)
T cd03300 185 VFVT----HDQEEALTMSDRIAV 203 (232)
T ss_pred EEEe----CCHHHHHHhcCEEEE
Confidence 7663 666555555554443
No 161
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.4e-21 Score=174.04 Aligned_cols=148 Identities=14% Similarity=0.172 Sum_probs=102.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Ccc-------cChhhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PVA-------MDIRELIS--------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~~-------~~i~~~i~--------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| +++ .++.+.+.
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~ 117 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIP 117 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCC
Confidence 589999999999999999999999999999999876421 12333 221 12333321
Q ss_pred -------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-
Q 025642 59 -------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS- 128 (250)
Q Consensus 59 -------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~- 128 (250)
++++++.+|+.+...... .+.. .+++++.||++++. +|+++|+|||++ ||+.++..+. ++++++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~-~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~~ 193 (280)
T PRK13633 118 PEEIRERVDESLKKVGMYEYRRHAP-HLLSGGQKQRVAIAGILAM--RPECIIFDEPTAMLDPSGRREVV-NTIKELNKK 193 (280)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCCc-ccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHh
Confidence 456677778765321110 1111 12334999999999 999999999999 9999999998 88988865
Q ss_pred CCCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
.|.+++++. |...+... ++.++....+
T Consensus 194 ~g~tillvt----H~~~~~~~-~d~v~~l~~G 220 (280)
T PRK13633 194 YGITIILIT----HYMEEAVE-ADRIIVMDSG 220 (280)
T ss_pred cCCEEEEEe----cChHHHhc-CCEEEEEECC
Confidence 488887663 55554333 4544444333
No 162
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=2.2e-21 Score=160.52 Aligned_cols=149 Identities=16% Similarity=0.190 Sum_probs=108.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc---------------------------CCCCCCcccChhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------------------ENFDYPVAMDIREL 56 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~---------------------------~~~~y~~~~~i~~~ 56 (250)
++.|||.+||||||++++|.=+.+|+.|.|.+.|..... +++..+..+++-++
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeN 113 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLEN 113 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHH
Confidence 578999999999999999999999999999998865311 11222222333333
Q ss_pred hh-----------------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHH
Q 025642 57 IS-----------------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (250)
Q Consensus 57 i~-----------------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~ 117 (250)
+- .+.++.+.|+..... .|...... ++++++|||+|+. +|++++|||||+ |||...-+
T Consensus 114 ViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-~YP~~LSGGQQQR~aIARaLam--eP~vmLFDEPTSALDPElVgE 190 (256)
T COG4598 114 VIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-AYPAHLSGGQQQRVAIARALAM--EPEVMLFDEPTSALDPELVGE 190 (256)
T ss_pred HHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-cCccccCchHHHHHHHHHHHhc--CCceEeecCCcccCCHHHHHH
Confidence 22 566778888876542 23222222 3456999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 118 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 118 i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
++ ++++.|+++|.|+++|. |.+.......+.+++.-.+
T Consensus 191 VL-kv~~~LAeEgrTMv~VT----HEM~FAR~Vss~v~fLh~G 228 (256)
T COG4598 191 VL-KVMQDLAEEGRTMVVVT----HEMGFARDVSSHVIFLHQG 228 (256)
T ss_pred HH-HHHHHHHHhCCeEEEEe----eehhHHHhhhhheEEeecc
Confidence 99 99999999999988775 6665444444444433333
No 163
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.85 E-value=4e-21 Score=166.92 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC--CCCCceEEEeecCCcc--------CCCCC-Ccc------cChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-PVA------MDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~i~i~~~dp~~--------~~~~y-~~~------~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|++ +|++|+|.+.|.+... ..+.| +++ .++++++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~ 107 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRS 107 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhc
Confidence 58999999999999999999995 7999999999876421 11333 222 23333221
Q ss_pred ---------------HHHHHHHhCCCC-CCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 59 ---------------LEDVMEELGLGP-NGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 59 ---------------~~~vm~~~~L~~-~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
+.++++.+++.+ .......-+.. .+++++.||++++. +|+++|+||||+ +|+.++..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~- 184 (243)
T TIGR01978 108 ARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL--EPKLAILDEIDSGLDIDALKIVA- 184 (243)
T ss_pred ccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-
Confidence 345666677753 11111100011 23344999999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHHHH
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~ 150 (250)
+++++++++|.+++++. |.......+
T Consensus 185 ~~l~~~~~~~~tvi~vs----H~~~~~~~~ 210 (243)
T TIGR01978 185 EGINRLREPDRSFLIIT----HYQRLLNYI 210 (243)
T ss_pred HHHHHHHHCCcEEEEEE----ecHHHHHhh
Confidence 88898876678876663 655544444
No 164
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.85 E-value=3.7e-21 Score=168.93 Aligned_cols=149 Identities=15% Similarity=0.220 Sum_probs=103.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc------ccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV------AMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~------~~~i~~~i~----------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| ++ ..++.+++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 108 (256)
T TIGR03873 29 LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWA 108 (256)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhcc
Confidence 579999999999999999999999999999998866421 12333 22 234444432
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+++....... ..+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 184 (256)
T TIGR03873 109 GDSPHDAAVVDRALARTELSHLADRD-MSTLSGGERQRVHVARALAQ--EPKLLLLDEPTNHLDVRAQLETL-ALVRELA 184 (256)
T ss_pred CCCHHHHHHHHHHHHHcCcHhhhcCC-cccCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HHHHHHH
Confidence 33455666664321110 00111 12334899999999 999999999999 9999999988 8898887
Q ss_pred hCCCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 128 ~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
+++.+++++ +|...+...+++.++....+
T Consensus 185 ~~~~tiii~----sH~~~~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 185 ATGVTVVAA----LHDLNLAASYCDHVVVLDGG 213 (256)
T ss_pred hcCCEEEEE----eCCHHHHHHhCCEEEEEeCC
Confidence 667787666 47777666666655544333
No 165
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.85 E-value=3.1e-21 Score=167.72 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=102.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----CCCCC-C------cccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-P------VAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----~~~~y-~------~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++.+++.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~ 107 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKI 107 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHH
Confidence 689999999999999999999999999999998876421 22333 1 1234444332
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~ 132 (250)
+.++++++++.+...... .+... +.+++.||++++. +|+++++|||++ +|+.++..+. +++++++++ +.+
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~-~~lS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~t 183 (237)
T TIGR00968 108 KARVEELLELVQLEGLGDRYP-NQLSGGQRQRVALARALAV--EPQVLLLDEPFGALDAKVRKELR-SWLRKLHDEVHVT 183 (237)
T ss_pred HHHHHHHHHHcCCHhHhhCCh-hhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCE
Confidence 356677777754321110 01111 2233899999999 999999999999 9999999999 888888765 778
Q ss_pred EEEEEeccccccccHHHHHHhhHHh
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++++ +|...+..++++.++..
T Consensus 184 vli~----sH~~~~~~~~~d~i~~l 204 (237)
T TIGR00968 184 TVFV----THDQEEAMEVADRIVVM 204 (237)
T ss_pred EEEE----eCCHHHHHhhcCEEEEE
Confidence 8665 46666556666654433
No 166
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=1.9e-21 Score=166.23 Aligned_cols=152 Identities=14% Similarity=0.136 Sum_probs=101.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-C------cccChhhhhhHHH-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELISLED------- 61 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~------~~~~i~~~i~~~~------- 61 (250)
+++++||||+||||++++|+|+.++.+|+|.+.|.|... ..+.| | +.++|.|++.+--
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~ 110 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKE 110 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccc
Confidence 689999999999999999999999999999999998633 33455 3 3455555543110
Q ss_pred -----HHHHhCCCCCCCchhhhhhhh------hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 62 -----VMEELGLGPNGGLIYCMEHLE------DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 62 -----vm~~~~L~~~g~~~~~~~~~~------~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
+=+-|.+-|.... ..+... +++..+|||||+. +|++|++|||+. |-|.-..+++ +.+++++++
T Consensus 111 ~~~~~~e~v~~lFP~Lke--r~~~~aG~LSGGEQQMLAiaRALm~--~PklLLLDEPs~GLaP~iv~~I~-~~i~~l~~~ 185 (237)
T COG0410 111 AQERDLEEVYELFPRLKE--RRNQRAGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIKELRKE 185 (237)
T ss_pred cccccHHHHHHHChhHHH--HhcCcccCCChHHHHHHHHHHHHhc--CCCEEEecCCccCcCHHHHHHHH-HHHHHHHHc
Confidence 0111222222100 001111 1222899999999 999999999999 9999999999 999999865
Q ss_pred -CCeEEEEEeccccccccHHHHHHhhHHhhhhHhHh
Q 025642 130 -NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (250)
Q Consensus 130 -~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~ 164 (250)
|.+|+.|- ++..-.-++.+...+.-.+.+.+
T Consensus 186 ~g~tIlLVE----Qn~~~Al~iaDr~yvle~Griv~ 217 (237)
T COG0410 186 GGMTILLVE----QNARFALEIADRGYVLENGRIVL 217 (237)
T ss_pred CCcEEEEEe----ccHHHHHHhhCEEEEEeCCEEEE
Confidence 77887774 44443344444443333443333
No 167
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.5e-21 Score=172.98 Aligned_cols=130 Identities=13% Similarity=0.155 Sum_probs=94.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| ++ ..++++++.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~ 116 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPP 116 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCH
Confidence 689999999999999999999999999999999876521 22444 21 235555443
Q ss_pred ------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-
Q 025642 59 ------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (250)
Q Consensus 59 ------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~- 129 (250)
+.++++++++.+...... .+.. .+.+++.||++++. +|+++|+|||++ ||+.++..++ +++++++++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrl~laral~~--~p~lllLDEP~~gLD~~~~~~l~-~~l~~~~~~~ 192 (271)
T PRK13632 117 KKMKDIIDDLAKKVGMEDYLDKEP-QNLSGGQKQRVAIASVLAL--NPEIIIFDESTSMLDPKGKREIK-KIMVDLRKTR 192 (271)
T ss_pred HHHHHHHHHHHHHcCCHHHhhCCc-ccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhc
Confidence 345667777764311110 0111 12334899999999 999999999999 9999999998 888888765
Q ss_pred CCeEEEEE
Q 025642 130 NFNVCAVY 137 (250)
Q Consensus 130 ~~~vi~v~ 137 (250)
+.+++++.
T Consensus 193 ~~tiii~s 200 (271)
T PRK13632 193 KKTLISIT 200 (271)
T ss_pred CcEEEEEE
Confidence 47776553
No 168
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.1e-21 Score=167.48 Aligned_cols=145 Identities=15% Similarity=0.170 Sum_probs=102.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----CCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|++.|.++.. ..+.| .+..++.+.+.
T Consensus 27 ~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~ 106 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEI 106 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHH
Confidence 579999999999999999999999999999999876532 12332 12234443332
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~ 132 (250)
+.++++.+++++...... .+.. .++++++||++++. +|+++++|||++ +|+.++..+. ++++++.++ +.+
T Consensus 107 ~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~~~~~~~t 182 (235)
T cd03299 107 ERKVLEIAEMLGIDHLLNRKP-ETLSGGEQQRVAIARALVV--NPKILLLDEPFSALDVRTKEKLR-EELKKIRKEFGVT 182 (235)
T ss_pred HHHHHHHHHHcCChhHHhcCc-ccCCHHHHHHHHHHHHHHc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHhcCCE
Confidence 345677788764321110 1111 22344999999999 999999999999 9999999988 888888654 788
Q ss_pred EEEEEeccccccccHHHHHHhhHH
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++ +|.......+++.++.
T Consensus 183 ili~----tH~~~~~~~~~d~i~~ 202 (235)
T cd03299 183 VLHV----THDFEEAWALADKVAI 202 (235)
T ss_pred EEEE----ecCHHHHHHhCCEEEE
Confidence 7655 3666555555554443
No 169
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.85 E-value=2.1e-21 Score=170.71 Aligned_cols=145 Identities=15% Similarity=0.166 Sum_probs=101.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC-----Ccc-----------CCCCC-Ccc--------cChhhhh-
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDY-PVA--------MDIRELI- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-----p~~-----------~~~~y-~~~--------~~i~~~i- 57 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+ +.. ..+.| +++ .++.+.+
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~ 113 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIG 113 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHH
Confidence 589999999999999999999999999999999976 321 12444 222 1222221
Q ss_pred ----------------hHHHHHHHhCCCC-CC-CchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHH
Q 025642 58 ----------------SLEDVMEELGLGP-NG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (250)
Q Consensus 58 ----------------~~~~vm~~~~L~~-~g-~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i 118 (250)
.+.++++.+++++ .. .....+. ..++++++||++++. +|+++|+|||++ +|+.+...+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS-~Gq~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l 190 (258)
T PRK11701 114 ERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFS-GGMQQRLQIARNLVT--HPRLVFMDEPTGGLDVSVQARL 190 (258)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCC-HHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHH
Confidence 1346677888853 11 1111111 112334999999999 999999999999 999999998
Q ss_pred HHHHHHHHHhC-CCeEEEEEeccccccccHHHHHHhhHH
Q 025642 119 LRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 119 ~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
. ++++++.++ |.+++++ +|.......+++.++.
T Consensus 191 ~-~~l~~~~~~~~~tii~i----sH~~~~~~~~~d~i~~ 224 (258)
T PRK11701 191 L-DLLRGLVRELGLAVVIV----THDLAVARLLAHRLLV 224 (258)
T ss_pred H-HHHHHHHHhcCcEEEEE----eCCHHHHHHhcCEEEE
Confidence 8 888888654 7787666 4766655566554433
No 170
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.1e-21 Score=183.31 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=105.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--CCceEEEeecCCcc--------CCCCC-C------cccChhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELI--------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~i~i~~~dp~~--------~~~~y-~------~~~~i~~~i--------- 57 (250)
+++|+||||||||||+++|+|+++| ++|+|.+.|.+... ..++| + +..++++.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 112 (506)
T PRK13549 33 IVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPG 112 (506)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhccccccc
Confidence 6899999999999999999999986 89999998875421 22333 2 123343322
Q ss_pred ----------hHHHHHHHhCCCCCCCchhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 58 ----------SLEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 58 ----------~~~~vm~~~~L~~~g~~~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
.++++++++++....... ...+. ++++++||++++. +|+++|+||||+ ||+.++..+. ++++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~ 187 (506)
T PRK13549 113 GIMDYDAMYLRAQKLLAQLKLDINPATP--VGNLGLGQQQLVEIAKALNK--QARLLILDEPTASLTESETAVLL-DIIR 187 (506)
T ss_pred CCcCHHHHHHHHHHHHHHcCCCCCcccc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHH
Confidence 145678888886432111 12222 3345999999999 999999999999 9999999999 8998
Q ss_pred HHHhCCCeEEEEEeccccccccHHHHHHhhHHhhh
Q 025642 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (250)
Q Consensus 125 ~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (250)
+++++|.+++++. |.......+++.++....
T Consensus 188 ~l~~~~~tvi~~t----H~~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 188 DLKAHGIACIYIS----HKLNEVKAISDTICVIRD 218 (506)
T ss_pred HHHHCCCEEEEEe----CcHHHHHHhcCEEEEEEC
Confidence 8877788876653 666655666665554433
No 171
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.1e-21 Score=173.17 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=103.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC---ceEEEeecCCcc-------CCCCC-Cc-------ccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVR---RTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~---G~i~i~~~dp~~-------~~~~y-~~-------~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++ |+|.+.|.+... ..++| ++ ..++.+.+.
T Consensus 35 ~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~ 114 (282)
T PRK13640 35 WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRA 114 (282)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCC
Confidence 589999999999999999999999987 899999876521 22344 21 234555442
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++++.+|+.+........-...+.+++.||++++. +|+++|+|||++ +|+.++..+. ++++++++
T Consensus 115 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~--~P~llllDEPt~gLD~~~~~~l~-~~l~~l~~ 191 (282)
T PRK13640 115 VPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAV--EPKIIILDESTSMLDPAGKEQIL-KLIRKLKK 191 (282)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHH
Confidence 3456777888653211110011122334999999999 999999999999 9999999998 88888875
Q ss_pred C-CCeEEEEEeccccccccHHHHHHhhHHhhhhH
Q 025642 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 129 ~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (250)
+ |.+|+++. |..... .+++.+++...+.
T Consensus 192 ~~g~tvli~t----H~~~~~-~~~d~i~~l~~G~ 220 (282)
T PRK13640 192 KNNLTVISIT----HDIDEA-NMADQVLVLDDGK 220 (282)
T ss_pred hcCCEEEEEe----cCHHHH-HhCCEEEEEECCE
Confidence 4 78886663 665544 3455554444433
No 172
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.2e-21 Score=170.65 Aligned_cols=130 Identities=12% Similarity=0.123 Sum_probs=94.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-------cChhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-------MDIRELI----------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-------~~i~~~i----------- 57 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| +++ .++++.+
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~ 116 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPY 116 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCH
Confidence 579999999999999999999999999999999976521 22344 221 1232222
Q ss_pred -----hHHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-
Q 025642 58 -----SLEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (250)
Q Consensus 58 -----~~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~- 129 (250)
.+.++++.+++.+...... .+.. .+++++.||++++. +|+++|+|||++ ||+.++..+. +++++++++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~ 192 (269)
T PRK13648 117 DEMHRRVSEALKQVDMLERADYEP-NALSGGQKQRVAIAGVLAL--NPSVIILDEATSMLDPDARQNLL-DLVRKVKSEH 192 (269)
T ss_pred HHHHHHHHHHHHHcCCchhhhCCc-ccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhc
Confidence 1456778888865321111 1111 22344999999999 999999999999 9999999998 888888654
Q ss_pred CCeEEEEE
Q 025642 130 NFNVCAVY 137 (250)
Q Consensus 130 ~~~vi~v~ 137 (250)
|.+++++.
T Consensus 193 ~~tiiivt 200 (269)
T PRK13648 193 NITIISIT 200 (269)
T ss_pred CCEEEEEe
Confidence 78876653
No 173
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.85 E-value=3.2e-21 Score=168.82 Aligned_cols=144 Identities=15% Similarity=0.139 Sum_probs=98.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC-----Cc-----------cCCCCC-Ccc--------cChhhhh-
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PA-----------AENFDY-PVA--------MDIRELI- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-----p~-----------~~~~~y-~~~--------~~i~~~i- 57 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+ .. ...+.| +++ .++.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~ 110 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIG 110 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHH
Confidence 589999999999999999999999999999998865 21 012333 211 1222221
Q ss_pred ----------------hHHHHHHHhCCCC-CCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHH
Q 025642 58 ----------------SLEDVMEELGLGP-NGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (250)
Q Consensus 58 ----------------~~~~vm~~~~L~~-~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i 118 (250)
.+.++++.+++.+ .... ...+.. .+++++.||++++. +|+++|+|||++ ||+.++..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~LSgG~~qrv~laral~~--~p~vlllDEP~~~LD~~~~~~l 187 (253)
T TIGR02323 111 ERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDD-LPRAFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQARL 187 (253)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHcCCChhhhhc-CchhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence 1455677788753 1110 001111 12344999999999 999999999999 999999999
Q ss_pred HHHHHHHHHh-CCCeEEEEEeccccccccHHHHHHhhH
Q 025642 119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 119 ~~~ll~~l~~-~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
. ++++++.+ .|.+++++. |.......+++.++
T Consensus 188 ~-~~l~~~~~~~~~tii~vs----H~~~~~~~~~d~~~ 220 (253)
T TIGR02323 188 L-DLLRGLVRDLGLAVIIVT----HDLGVARLLAQRLL 220 (253)
T ss_pred H-HHHHHHHHhcCCEEEEEe----CCHHHHHHhcCEEE
Confidence 8 88888765 478887664 66655555554433
No 174
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.85 E-value=4.1e-21 Score=168.64 Aligned_cols=144 Identities=17% Similarity=0.242 Sum_probs=100.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC---ccCCCCCCcc--cChhhhh---------hHHHHHHHhCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENFDYPVA--MDIRELI---------SLEDVMEELGLG 69 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp---~~~~~~y~~~--~~i~~~i---------~~~~vm~~~~L~ 69 (250)
+++|+||||||||||+++|+|+++|++|+|.+.+... ..+...+.+. .++++++ .+.++++.+++.
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 111 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAG 111 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCCh
Confidence 5899999999999999999999999999999875211 0011111111 1333332 145677788876
Q ss_pred CCCCchhhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEEEeccccccc
Q 025642 70 PNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFIT 145 (250)
Q Consensus 70 ~~g~~~~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~vi~v~l~d~~~~~ 145 (250)
+..... ...+ .+++++.||++++. +|+++|+|||++ +|+.++..+. ++++++.++ +.+++++. |...
T Consensus 112 ~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tiiivs----H~~~ 182 (251)
T PRK09544 112 HLIDAP--MQKLSGGETQRVLLARALLN--RPQLLVLDEPTQGVDVNGQVALY-DLIDQLRRELDCAVLMVS----HDLH 182 (251)
T ss_pred HHHhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHhcCCEEEEEe----cCHH
Confidence 432110 1111 12344999999999 999999999999 9999999988 888888665 78887663 7766
Q ss_pred cHHHHHHhhHH
Q 025642 146 DVTKFISGCMA 156 (250)
Q Consensus 146 d~~~~~s~~l~ 156 (250)
+...+++.++.
T Consensus 183 ~i~~~~d~i~~ 193 (251)
T PRK09544 183 LVMAKTDEVLC 193 (251)
T ss_pred HHHHhCCEEEE
Confidence 66666665543
No 175
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.85 E-value=2.9e-21 Score=160.19 Aligned_cols=115 Identities=19% Similarity=0.240 Sum_probs=85.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-CcccChhhhhhHHHHHHHhCCCCCCCch
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAMDIRELISLEDVMEELGLGPNGGLI 75 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~~~i~~~i~~~~vm~~~~L~~~g~~~ 75 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| +++..+... ++.+.+ -.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l------LS---- 98 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI------LS---- 98 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHC------cC----
Confidence 579999999999999999999999999999998865421 22333 222211111 222211 11
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 76 YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 76 ~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
..+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++++|.+++++.
T Consensus 99 -----~G~~qrv~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~s 153 (173)
T cd03246 99 -----GGQRQRLGLARALYG--NPRILVLDEPNSHLDVEGERALN-QAIAALKAAGATRIVIA 153 (173)
T ss_pred -----HHHHHHHHHHHHHhc--CCCEEEEECCccccCHHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 122355999999999 999999999999 9999999998 88888876688876664
No 176
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.85 E-value=1.1e-20 Score=162.18 Aligned_cols=131 Identities=16% Similarity=0.210 Sum_probs=94.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc----------cCCCCC-Cc------ccChhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-PV------AMDIRELI--------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~----------~~~~~y-~~------~~~i~~~i--------- 57 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| ++ ..++.+.+
T Consensus 33 ~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~ 112 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPN 112 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccC
Confidence 68999999999999999999999999999999887542 122333 21 22333222
Q ss_pred --------hHHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 58 --------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 58 --------~~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
.+.++++++|+++........-...+.++++||++++. +|+++|+|||++ +|+.++..+. ++++++.+
T Consensus 113 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~ 189 (220)
T TIGR02982 113 LSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVH--RPKLVLADEPTAALDSKSGRDVV-ELMQKLAR 189 (220)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHH
Confidence 15667888888653211111111123344999999999 999999999999 9999999988 88888865
Q ss_pred -CCCeEEEEE
Q 025642 129 -RNFNVCAVY 137 (250)
Q Consensus 129 -~~~~vi~v~ 137 (250)
.+.+++++.
T Consensus 190 ~~~~tii~~s 199 (220)
T TIGR02982 190 EQGCTILIVT 199 (220)
T ss_pred HcCCEEEEEe
Confidence 477876663
No 177
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.85 E-value=7.4e-21 Score=163.99 Aligned_cols=143 Identities=21% Similarity=0.301 Sum_probs=97.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC---CCCceEEEeecCCcc----CCCCC-------CcccChhhhhhH----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELISL---------- 59 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~---~~~G~i~i~~~dp~~----~~~~y-------~~~~~i~~~i~~---------- 59 (250)
+++|+||||||||||+++|+|+++ |++|+|.+.|.++.. ..+.| .+..++++++..
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~ 114 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKS 114 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhccccc
Confidence 589999999999999999999999 899999999876521 22333 223455555431
Q ss_pred ---------HH-HHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 60 ---------ED-VMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 60 ---------~~-vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
++ .++.+++.+..... ..+.. .+.++++||++++. +|+++|+|||++ +|+.++..+. +++++++
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrl~laral~~--~p~illlDEP~~gLD~~~~~~~~-~~l~~~~ 190 (226)
T cd03234 115 SDAIRKKRVEDVLLRDLALTRIGGNL-VKGISGGERRRVSIAVQLLW--DPKVLILDEPTSGLDSFTALNLV-STLSQLA 190 (226)
T ss_pred chHHHHHHHHHHHHHhhcchhhhccc-ccCcCHHHHHHHHHHHHHHh--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHH
Confidence 11 34444544321100 00111 12334899999999 999999999999 9999999988 8888887
Q ss_pred hCCCeEEEEEeccccccc-cHHHHHHhh
Q 025642 128 SRNFNVCAVYLLDSQFIT-DVTKFISGC 154 (250)
Q Consensus 128 ~~~~~vi~v~l~d~~~~~-d~~~~~s~~ 154 (250)
+++.+++++. |... +...+++.+
T Consensus 191 ~~~~tiii~s----h~~~~~~~~~~d~i 214 (226)
T cd03234 191 RRNRIVILTI----HQPRSDLFRLFDRI 214 (226)
T ss_pred HCCCEEEEEe----cCCCHHHHHhCCEE
Confidence 6677776553 5552 444554443
No 178
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.85 E-value=1.7e-20 Score=161.39 Aligned_cols=143 Identities=16% Similarity=0.198 Sum_probs=97.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEe--ec--CCc-----------cCCCCC-Cc------ccChhhhhh---
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV--NL--DPA-----------AENFDY-PV------AMDIRELIS--- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~--~~--dp~-----------~~~~~y-~~------~~~i~~~i~--- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+. |. +.. ...+.| ++ ..++++.+.
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 115 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPL 115 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHH
Confidence 589999999999999999999999999999997 32 321 122344 22 223333321
Q ss_pred -------------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 59 -------------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 59 -------------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
+.++++.+++.+........+... +++++.||++++. +|+++|+|||++ +|+.++..+. +++
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l 192 (224)
T TIGR02324 116 LERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIA--DYPILLLDEPTASLDAANRQVVV-ELI 192 (224)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHH
Confidence 345677777754210000111111 2344999999999 999999999999 9999999988 888
Q ss_pred HHHHhCCCeEEEEEeccccccccHHHHHHh
Q 025642 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (250)
Q Consensus 124 ~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~ 153 (250)
++++++|.+++++. |.......+++.
T Consensus 193 ~~~~~~g~tii~vs----H~~~~~~~~~d~ 218 (224)
T TIGR02324 193 AEAKARGAALIGIF----HDEEVRELVADR 218 (224)
T ss_pred HHHHhcCCEEEEEe----CCHHHHHHhcce
Confidence 88876788876663 555444444443
No 179
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.1e-21 Score=182.14 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=103.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--------cCCCCC-Cc------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-PV------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--------~~~~~y-~~------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...++| ++ ..++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~ 111 (501)
T PRK11288 32 VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGI 111 (501)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCC
Confidence 58999999999999999999999999999999886642 122333 22 234433321
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+|+.+..... ..+.. .++++++||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~ 187 (501)
T PRK11288 112 VNRRLLNYEAREQLEHLGVDIDPDTP-LKYLSIGQRQMVEIAKALAR--NARVIAFDEPTSSLSAREIEQLF-RVIRELR 187 (501)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCcCCc-hhhCCHHHHHHHHHHHHHHh--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHH
Confidence 45577888886432111 11122 23345999999999 999999999999 9999999998 8888887
Q ss_pred hCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 128 SRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 128 ~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++|.+++++. |.......+++.++..
T Consensus 188 ~~g~tiiiit----Hd~~~~~~~~d~i~~l 213 (501)
T PRK11288 188 AEGRVILYVS----HRMEEIFALCDAITVF 213 (501)
T ss_pred hCCCEEEEEe----CCHHHHHHhCCEEEEE
Confidence 7788877664 5555555555544443
No 180
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.85 E-value=5.8e-21 Score=183.21 Aligned_cols=147 Identities=13% Similarity=0.210 Sum_probs=105.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Ccc---------cChhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PVA---------MDIRELI-------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~~---------~~i~~~i-------- 57 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| ++. .++.+.+
T Consensus 291 ~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~ 370 (510)
T PRK15439 291 ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRR 370 (510)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhh
Confidence 689999999999999999999999999999998865321 23444 221 2333322
Q ss_pred -----------hHHHHHHHhCCC-CCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 58 -----------SLEDVMEELGLG-PNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 58 -----------~~~~vm~~~~L~-~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
.++++++.+++. ...... ..+.. .+++++.||++++. +|++||+||||+ ||+.++..+. +++
T Consensus 371 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LSgG~kqrl~la~al~~--~p~lLlLDEPt~gLD~~~~~~l~-~~l 446 (510)
T PRK15439 371 GFWIKPARENAVLERYRRALNIKFNHAEQA-ARTLSGGNQQKVLIAKCLEA--SPQLLIVDEPTRGVDVSARNDIY-QLI 446 (510)
T ss_pred ccccChHHHHHHHHHHHHHcCCCCCCccCc-cccCCcHHHHHHHHHHHHhh--CCCEEEECCCCcCcChhHHHHHH-HHH
Confidence 144677888886 322111 11111 12344999999999 999999999999 9999999999 899
Q ss_pred HHHHhCCCeEEEEEeccccccccHHHHHHhhHHhh
Q 025642 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (250)
Q Consensus 124 ~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~ 158 (250)
++++++|.+++++ +|.......+++.++...
T Consensus 447 ~~l~~~g~tiIiv----sHd~~~i~~~~d~i~~l~ 477 (510)
T PRK15439 447 RSIAAQNVAVLFI----SSDLEEIEQMADRVLVMH 477 (510)
T ss_pred HHHHhCCCEEEEE----CCCHHHHHHhCCEEEEEE
Confidence 9988778888666 477776677766555443
No 181
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.2e-21 Score=180.89 Aligned_cols=144 Identities=10% Similarity=0.157 Sum_probs=101.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--------cCCCCC-Cc------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-PV------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--------~~~~~y-~~------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...++| ++ ..++.+.+.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~ 105 (491)
T PRK10982 26 IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF 105 (491)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccc
Confidence 58999999999999999999999999999999987542 122333 22 234433321
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
++++++.+++....... ..+.. .++++++||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgGq~qrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~ 181 (491)
T PRK10982 106 VDQDKMYRDTKAIFDELDIDIDPRAK-VATLSVSQMQMIEIAKAFSY--NAKIVIMDEPTSSLTEKEVNHLF-TIIRKLK 181 (491)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCccCc-hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHH
Confidence 45567777875432111 11111 13344999999999 999999999999 9999999998 8888887
Q ss_pred hCCCeEEEEEeccccccccHHHHHHhhH
Q 025642 128 SRNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 128 ~~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
+.|.+++++. |.......+++.++
T Consensus 182 ~~g~tvii~t----H~~~~~~~~~d~i~ 205 (491)
T PRK10982 182 ERGCGIVYIS----HKMEEIFQLCDEIT 205 (491)
T ss_pred hCCCEEEEEe----cCHHHHHHhCCEEE
Confidence 7788876653 55444445544443
No 182
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.84 E-value=4.1e-21 Score=182.80 Aligned_cols=152 Identities=16% Similarity=0.056 Sum_probs=107.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-cCCCCCCcccChhhhhh----------------HHHHHHHh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS----------------LEDVMEEL 66 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-~~~~~y~~~~~i~~~i~----------------~~~vm~~~ 66 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. .....+.+..++++.+. +.++++.+
T Consensus 52 ivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~l 131 (549)
T PRK13545 52 IVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFA 131 (549)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999886521 11122333445555442 23566777
Q ss_pred CCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 025642 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (250)
Q Consensus 67 ~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~ 145 (250)
++++.......--...+++++.||++++. +|+++|+|||++ ||+.++..++ ++++++++.|.+++++. |...
T Consensus 132 gL~~~ld~~~~~LSGGQrQRVaLArAL~~--~P~LLLLDEPTsgLD~~sr~~Ll-elL~el~~~G~TIIIVS----Hdl~ 204 (549)
T PRK13545 132 DIGKFIYQPVKTYSSGMKSRLGFAISVHI--NPDILVIDEALSVGDQTFTKKCL-DKMNEFKEQGKTIFFIS----HSLS 204 (549)
T ss_pred CChhHhhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEE----CCHH
Confidence 77643211100011112344899999999 999999999999 9999999988 88888876788886663 7776
Q ss_pred cHHHHHHhhHHhhhhHh
Q 025642 146 DVTKFISGCMASLSAMV 162 (250)
Q Consensus 146 d~~~~~s~~l~~~~~~~ 162 (250)
....+++.++....+.+
T Consensus 205 ~i~~l~DrIivL~~GkI 221 (549)
T PRK13545 205 QVKSFCTKALWLHYGQV 221 (549)
T ss_pred HHHHhCCEEEEEECCEE
Confidence 66677776665544443
No 183
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.84 E-value=8.8e-21 Score=167.92 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=103.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC---------CcccChhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELI------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y---------~~~~~i~~~i------- 57 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++.+.+
T Consensus 40 ~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~ 119 (268)
T PRK10419 40 TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL 119 (268)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh
Confidence 589999999999999999999999999999999876421 12332 1223333332
Q ss_pred ----------hHHHHHHHhCCCC-CCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 58 ----------SLEDVMEELGLGP-NGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 58 ----------~~~~vm~~~~L~~-~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
.++++++.+|+.+ ..... ..... .+.+++.||++++. +|+++|+|||++ ||+.++..+. ++++
T Consensus 120 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~LS~Ge~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~ 195 (268)
T PRK10419 120 LSLDKAERLARASEMLRAVDLDDSVLDKR-PPQLSGGQLQRVCLARALAV--EPKLLILDEAVSNLDLVLQAGVI-RLLK 195 (268)
T ss_pred ccCCHHHHHHHHHHHHHHcCCChhHhhCC-CccCChHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHH
Confidence 1456777888853 21110 01111 23344999999999 999999999999 9999999988 8888
Q ss_pred HHHhC-CCeEEEEEeccccccccHHHHHHhhHHhhh
Q 025642 125 HLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (250)
Q Consensus 125 ~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (250)
+++++ +.+++++ +|...+...+++.++....
T Consensus 196 ~~~~~~~~tiiiv----sH~~~~i~~~~d~i~~l~~ 227 (268)
T PRK10419 196 KLQQQFGTACLFI----THDLRLVERFCQRVMVMDN 227 (268)
T ss_pred HHHHHcCcEEEEE----ECCHHHHHHhCCEEEEEEC
Confidence 88754 7787666 3766666666665544433
No 184
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=3.7e-21 Score=166.40 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=90.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| +++ .++++++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~ 109 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVE 109 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHH
Confidence 579999999999999999999999999999998865421 22333 221 24554442
Q ss_pred -------HHHHHHHh--CCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 -------LEDVMEEL--GLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 -------~~~vm~~~--~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++.+ ++....... ..+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. +++++++
T Consensus 110 ~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~ 185 (234)
T cd03251 110 EAARAANAHEFIMELPEGYDTVIGER-GVKLSGGQRQRIAIARALLK--DPPILILDEATSALDTESERLVQ-AALERLM 185 (234)
T ss_pred HHHHHcCcHHHHHhcccCcceeeccC-CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence 12222222 222111000 00111 12344999999999 999999999999 9999999988 8888886
Q ss_pred hCCCeEEEEEeccccccccH
Q 025642 128 SRNFNVCAVYLLDSQFITDV 147 (250)
Q Consensus 128 ~~~~~vi~v~l~d~~~~~d~ 147 (250)
+ +.+++++ +|.....
T Consensus 186 ~-~~tii~~----sh~~~~~ 200 (234)
T cd03251 186 K-NRTTFVI----AHRLSTI 200 (234)
T ss_pred C-CCEEEEE----ecCHHHH
Confidence 4 7777655 3555433
No 185
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=7.2e-21 Score=182.10 Aligned_cols=146 Identities=14% Similarity=0.218 Sum_probs=104.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--------cCCCCC-Ccc---------cChhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-PVA---------MDIRELI-------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--------~~~~~y-~~~---------~~i~~~i-------- 57 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...++| +++ .++.+.+
T Consensus 280 ~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~ 359 (501)
T PRK10762 280 ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYF 359 (501)
T ss_pred EEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhh
Confidence 68999999999999999999999999999999886542 123444 221 2343322
Q ss_pred --------------hHHHHHHHhCCC-CCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 58 --------------SLEDVMEELGLG-PNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 58 --------------~~~~vm~~~~L~-~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
.++++++.+++. +..... .-+.. .+++++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LSgGekqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l~- 435 (501)
T PRK10762 360 SRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-IGLLSGGNQQKVAIARGLMT--RPKVLILDEPTRGVDVGAKKEIY- 435 (501)
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCCCCccCc-hhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCCCHhHHHHHH-
Confidence 144677788884 322111 11111 23344999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+++++++++|.+++++ +|.......+++.++..
T Consensus 436 ~~l~~~~~~g~tviiv----tHd~~~~~~~~d~v~~l 468 (501)
T PRK10762 436 QLINQFKAEGLSIILV----SSEMPEVLGMSDRILVM 468 (501)
T ss_pred HHHHHHHHCCCEEEEE----cCCHHHHHhhCCEEEEE
Confidence 8999987778888666 47776666666654443
No 186
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=180.20 Aligned_cols=145 Identities=16% Similarity=0.214 Sum_probs=104.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Cc---------ccChhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV---------AMDIRELI-------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~---------~~~i~~~i-------- 57 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..++| ++ ..++.+.+
T Consensus 281 ~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~ 360 (501)
T PRK11288 281 IVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHH 360 (501)
T ss_pred EEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhh
Confidence 589999999999999999999999999999998865321 12333 11 12333322
Q ss_pred --------------hHHHHHHHhCCC-CCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 58 --------------SLEDVMEELGLG-PNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 58 --------------~~~~vm~~~~L~-~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
.++++++.+++. ...... ..+.. .+++++.||++++. +|+++|+||||+ ||+.++..++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LSgGq~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~- 436 (501)
T PRK11288 361 LRAGCLINNRWEAENADRFIRSLNIKTPSREQL-IMNLSGGNQQKAILGRWLSE--DMKVILLDEPTRGIDVGAKHEIY- 436 (501)
T ss_pred cccccccChHHHHHHHHHHHHhcCcccCCccCc-cccCCHHHHHHHHHHHHHcc--CCCEEEEcCCCCCCCHhHHHHHH-
Confidence 145677788884 221111 11111 23344999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++++++.|.+|+++ +|+......+++.++.
T Consensus 437 ~~l~~l~~~g~tviiv----sHd~~~~~~~~d~i~~ 468 (501)
T PRK11288 437 NVIYELAAQGVAVLFV----SSDLPEVLGVADRIVV 468 (501)
T ss_pred HHHHHHHhCCCEEEEE----CCCHHHHHhhCCEEEE
Confidence 8999998778888766 4777777777665543
No 187
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.84 E-value=8.9e-21 Score=167.06 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=101.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC---CceEEEeecCCcc------------CCCCC-Cc------ccChhhhhh---
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA------------ENFDY-PV------AMDIRELIS--- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~i~i~~~dp~~------------~~~~y-~~------~~~i~~~i~--- 58 (250)
+++|+||||||||||+++|+|+++|+ +|+|.+.|.+... ..+.| ++ ..++.+++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 111 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA 111 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhh
Confidence 58999999999999999999999886 4999999865421 12333 21 234444332
Q ss_pred ---------------------HHHHHHHhCCCCCCC-chhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhH
Q 025642 59 ---------------------LEDVMEELGLGPNGG-LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (250)
Q Consensus 59 ---------------------~~~vm~~~~L~~~g~-~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~ 115 (250)
+.++++.+|+.+... ....+ ...+++++.||++++. +|+++|+|||++ ||+.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L-S~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~ 188 (262)
T PRK09984 112 LGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL-SGGQQQRVAIARALMQ--QAKVILADEPIASLDPESA 188 (262)
T ss_pred cccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc-CHHHHHHHHHHHHHhc--CCCEEEecCccccCCHHHH
Confidence 455667777753211 11001 1122344999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 116 VPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 116 ~~i~~~ll~~l~~-~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
..+. ++++++++ .|.+++++ +|.......+++.++..
T Consensus 189 ~~l~-~~l~~~~~~~g~tvii~----tH~~~~~~~~~d~i~~l 226 (262)
T PRK09984 189 RIVM-DTLRDINQNDGITVVVT----LHQVDYALRYCERIVAL 226 (262)
T ss_pred HHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCCEEEEE
Confidence 9998 88888875 47888666 36666556666654443
No 188
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.84 E-value=8.3e-21 Score=168.65 Aligned_cols=149 Identities=19% Similarity=0.153 Sum_probs=103.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC--------CceEEEeecCCcc-------CCCCC-Cc------ccChhhhhh---
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV--------RRTMHIVNLDPAA-------ENFDY-PV------AMDIRELIS--- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~--------~G~i~i~~~dp~~-------~~~~y-~~------~~~i~~~i~--- 58 (250)
+++|+||||||||||+++|+|+++|+ +|+|.+.|.+... ..+.| ++ ..++++++.
T Consensus 29 ~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~ 108 (272)
T PRK13547 29 VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGR 108 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcc
Confidence 58999999999999999999999998 8999998865421 11222 11 234444332
Q ss_pred -----------------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHh---------cCCCCCEEEEeCCCc-c
Q 025642 59 -----------------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELD---------NYLDDDYLVFDCPGQ-I 110 (250)
Q Consensus 59 -----------------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~---------~~~~~~~lllDEPt~-L 110 (250)
+.++++.+++.+...... .+.. .+.+++.||++++ . +|+++|+|||++ |
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgG~~qrv~laral~~~~~~~~~~~--~p~lllLDEPt~~L 185 (272)
T PRK13547 109 YPHARRAGALTHRDGEIAWQALALAGATALVGRDV-TTLSGGELARVQFARVLAQLWPPHDAAQ--PPRYLLLDEPTAAL 185 (272)
T ss_pred cccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-ccCCHHHHHHHHHHHHHhccccccccCC--CCCEEEEcCccccC
Confidence 345666777754321110 0111 1234499999999 5 899999999999 9
Q ss_pred CHHhHHHHHHHHHHHHHhC-CCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 111 ELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 111 D~~~~~~i~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
|+.++..+. ++++++.++ |.+++++. |...+..++++.++....+
T Consensus 186 D~~~~~~l~-~~l~~~~~~~~~tviiis----H~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 186 DLAHQHRLL-DTVRRLARDWNLGVLAIV----HDPNLAARHADRIAMLADG 231 (272)
T ss_pred CHHHHHHHH-HHHHHHHHhcCCEEEEEE----CCHHHHHHhCCEEEEEECC
Confidence 999999999 888888765 78887663 6666666666655544443
No 189
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=8.5e-21 Score=181.80 Aligned_cols=147 Identities=14% Similarity=0.217 Sum_probs=104.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCceEEEeecCCc--------cCCCCC-Cc---------ccChhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPA--------AENFDY-PV---------AMDIRELI------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~i~i~~~dp~--------~~~~~y-~~---------~~~i~~~i------- 57 (250)
+++|+||||||||||+++|+|+++ |++|+|.+.|.++. ...++| ++ ..++.+++
T Consensus 290 ~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 369 (506)
T PRK13549 290 ILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDR 369 (506)
T ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhh
Confidence 589999999999999999999998 59999999886542 112333 21 12333322
Q ss_pred --------------hHHHHHHHhCCCC-CCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 58 --------------SLEDVMEELGLGP-NGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 58 --------------~~~~vm~~~~L~~-~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
.++++++++++.+ .... ...+.. .+++++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSgG~kqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l~- 445 (506)
T PRK13549 370 FTGGSRIDDAAELKTILESIQRLKVKTASPEL-AIARLSGGNQQKAVLAKCLLL--NPKILILDEPTRGIDVGAKYEIY- 445 (506)
T ss_pred hccCcccChHHHHHHHHHHHHhcCccCCCccc-ccccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHHH-
Confidence 1445677888852 2111 111111 13344999999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhh
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~ 158 (250)
+++++++++|.+|+++ +|.......+++.++...
T Consensus 446 ~~l~~l~~~g~tvi~~----sHd~~~~~~~~d~v~~l~ 479 (506)
T PRK13549 446 KLINQLVQQGVAIIVI----SSELPEVLGLSDRVLVMH 479 (506)
T ss_pred HHHHHHHHCCCEEEEE----CCCHHHHHHhCCEEEEEE
Confidence 8999998778888665 477777777766555443
No 190
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.84 E-value=6.1e-21 Score=161.24 Aligned_cols=132 Identities=18% Similarity=0.291 Sum_probs=94.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC--CCCCceEEEeecCCcc----CCCCC-Cc------ccChhhhhhHHHHHHHhCCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA----ENFDY-PV------AMDIRELISLEDVMEELGLGP 70 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~i~i~~~dp~~----~~~~y-~~------~~~i~~~i~~~~vm~~~~L~~ 70 (250)
+++|+||||||||||+++|+|++ +|.+|+|.++|.++.. ..+.| ++ ..++++.+.... .+. .
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~---~~~-~- 111 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAA---KLR-G- 111 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHH---Hhc-c-
Confidence 57999999999999999999999 9999999999987632 23344 22 234554433211 110 1
Q ss_pred CCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc-cHH
Q 025642 71 NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVT 148 (250)
Q Consensus 71 ~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~-d~~ 148 (250)
+. ..+.+++.||++++. +|+++|+|||++ +|+.++..+. ++++++++++.+++++. |... +..
T Consensus 112 -------LS-~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~s----h~~~~~~~ 176 (194)
T cd03213 112 -------LS-GGERKRVSIALELVS--NPSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGRTIICSI----HQPSSEIF 176 (194)
T ss_pred -------CC-HHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEEe----cCchHHHH
Confidence 11 122344899999999 999999999999 9999999988 88888876688876663 5553 344
Q ss_pred HHHHhhH
Q 025642 149 KFISGCM 155 (250)
Q Consensus 149 ~~~s~~l 155 (250)
.+++.++
T Consensus 177 ~~~d~v~ 183 (194)
T cd03213 177 ELFDKLL 183 (194)
T ss_pred HhcCEEE
Confidence 4544443
No 191
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.84 E-value=1.7e-20 Score=164.71 Aligned_cols=144 Identities=14% Similarity=0.194 Sum_probs=100.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC----CCceEEEeecCCc-----cCCCCC-Ccc--------cChhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPA-----AENFDY-PVA--------MDIRELI-------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~----~~G~i~i~~~dp~-----~~~~~y-~~~--------~~i~~~i-------- 57 (250)
+++|+||||||||||+++|+|+++| ++|+|.+.|.+.. ...+.| +++ .++.+.+
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~ 110 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG 110 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC
Confidence 5899999999999999999999999 9999999887642 122333 111 2222211
Q ss_pred ------hHHHHHHHhCCCCCC----CchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 58 ------SLEDVMEELGLGPNG----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 58 ------~~~~vm~~~~L~~~g----~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
.+.++++.+++.+.. .....+. ..+++++.||++++. +|+++|+|||++ +|+.++..+. ++++++
T Consensus 111 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS-~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~ 186 (254)
T PRK10418 111 KPADDATLTAALEAVGLENAARVLKLYPFEMS-GGMLQRMMIALALLC--EAPFIIADEPTTDLDVVAQARIL-DLLESI 186 (254)
T ss_pred CChHHHHHHHHHHHcCCCChhhhhhcCCcccC-HHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHHHH
Confidence 145677888886521 1111111 112334999999999 999999999999 9999999988 888888
Q ss_pred HhC-CCeEEEEEeccccccccHHHHHHhhH
Q 025642 127 KSR-NFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 127 ~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
.++ |.+++++. |...+...+++.++
T Consensus 187 ~~~~g~til~~s----H~~~~~~~~~d~v~ 212 (254)
T PRK10418 187 VQKRALGMLLVT----HDMGVVARLADDVA 212 (254)
T ss_pred HHhcCcEEEEEe----cCHHHHHHhCCEEE
Confidence 654 78886663 66665556655443
No 192
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.84 E-value=2.7e-20 Score=160.55 Aligned_cols=129 Identities=19% Similarity=0.169 Sum_probs=93.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+.+|++|+|.+.|.++.. ..+.| +++ .++++.+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~ 114 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP 114 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCChHH
Confidence 579999999999999999999999999999999865421 22333 211 24555442
Q ss_pred --HHHHHHHhCCCC-C-CCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCC
Q 025642 59 --LEDVMEELGLGP-N-GGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF 131 (250)
Q Consensus 59 --~~~vm~~~~L~~-~-g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~ 131 (250)
++++++.+++.. . .... .+.. .+.+++.||++++. +|+++|+|||++ +|+.++..+. ++++++++ .|.
T Consensus 115 ~~~~~~l~~~~l~~~~~~~~~--~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~ 189 (225)
T PRK10247 115 AIFLDDLERFALPDTILTKNI--AELSGGEKQRISLIRNLQF--MPKVLLLDEITSALDESNKHNVN-EIIHRYVREQNI 189 (225)
T ss_pred HHHHHHHHHcCCChHHhcCCc--ccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCC
Confidence 346777788742 1 1111 1111 12344999999999 999999999999 9999999888 88888865 477
Q ss_pred eEEEEE
Q 025642 132 NVCAVY 137 (250)
Q Consensus 132 ~vi~v~ 137 (250)
+++++.
T Consensus 190 tvii~s 195 (225)
T PRK10247 190 AVLWVT 195 (225)
T ss_pred EEEEEE
Confidence 876664
No 193
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.1e-21 Score=169.95 Aligned_cols=169 Identities=15% Similarity=0.209 Sum_probs=134.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC-----------CccCCCCC-C------cccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----------PAAENFDY-P------VAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-----------p~~~~~~y-~------~~~~i~~~i~------- 58 (250)
++++.|++||||||++++|+|+.+|+.|.|.++|.- |..+.++| + |.++++.++.
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~ 105 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSM 105 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcccc
Confidence 678999999999999999999999999999998743 22345666 3 3445555443
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeE
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNV 133 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~v 133 (250)
.+++...+|++|.......--.-.++++++|+|||.. .|++|++|||.+ ||...+++++ -.+++|.++ +..|
T Consensus 106 ~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt--~P~LLLmDEPLaSLD~~RK~Eil-pylERL~~e~~IPI 182 (352)
T COG4148 106 RAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKREIL-PYLERLRDEINIPI 182 (352)
T ss_pred hHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhc--CCCeeeecCchhhcccchhhHHH-HHHHHHHHhcCCCE
Confidence 6778888888886311111111123466999999999 999999999999 9999999999 889999865 7778
Q ss_pred EEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeecCchhhhc
Q 025642 134 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 179 (250)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK~Dl~~ 179 (250)
+.| ||.+.+.....+.+.+.-.+.++-..|...|++..|+..
T Consensus 183 lYV----SHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~~~~p 224 (352)
T COG4148 183 LYV----SHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFPP 224 (352)
T ss_pred EEE----ecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCcccCc
Confidence 777 499999999999999999999999999998888887754
No 194
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.84 E-value=7.1e-21 Score=161.49 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=94.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC--CCCCCceEEEeecCCcc--------CCCCC-CcccChhhhhhHHHHHHHhCCCCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-PVAMDIRELISLEDVMEELGLGPNG 72 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~--l~~~~G~i~i~~~dp~~--------~~~~y-~~~~~i~~~i~~~~vm~~~~L~~~g 72 (250)
+++|+||||||||||+++|+|+ ++|++|+|.++|.++.. ..+.| +++.......++++.++...-.-
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~L-- 105 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEGF-- 105 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhccccC--
Confidence 5899999999999999999999 47999999999976532 12444 33322222233444442221011
Q ss_pred CchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHH-H
Q 025642 73 GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK-F 150 (250)
Q Consensus 73 ~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~-~ 150 (250)
...+.+++.||++++. +|+++|+||||+ +|+.++..+. ++++++++++.+++++ +|....+.+ +
T Consensus 106 -------S~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~~~tiii~----sh~~~~~~~~~ 171 (200)
T cd03217 106 -------SGGEKKRNEILQLLLL--EPDLAILDEPDSGLDIDALRLVA-EVINKLREEGKSVLII----THYQRLLDYIK 171 (200)
T ss_pred -------CHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEE----ecCHHHHHHhh
Confidence 1122344999999999 999999999999 9999999988 8888887667787665 366555544 4
Q ss_pred HHhhH
Q 025642 151 ISGCM 155 (250)
Q Consensus 151 ~s~~l 155 (250)
++.++
T Consensus 172 ~d~i~ 176 (200)
T cd03217 172 PDRVH 176 (200)
T ss_pred CCEEE
Confidence 44433
No 195
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=8.7e-21 Score=166.09 Aligned_cols=145 Identities=16% Similarity=0.233 Sum_probs=97.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+.+ |++|+|.++|.+.. ...+.| +++ .++++++.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~ 113 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRV 113 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHH
Confidence 589999999999999999999864 58999999886642 123444 221 24444443
Q ss_pred ------------HHHHHHHhCCCCC-CCch--hhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPN-GGLI--YCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~-g~~~--~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
++++++.+++.+. .... ...+.. .+++++.||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 190 (253)
T PRK14242 114 NGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV--EPEVLLMDEPASALDPIATQKIE-E 190 (253)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-H
Confidence 2234555666321 0000 000111 12344999999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+++++++ +.+++++ +|.......+++.++.
T Consensus 191 ~l~~~~~-~~tvii~----tH~~~~~~~~~d~v~~ 220 (253)
T PRK14242 191 LIHELKA-RYTIIIV----THNMQQAARVSDVTAF 220 (253)
T ss_pred HHHHHhc-CCeEEEE----EecHHHHHHhCCEEEE
Confidence 8888854 6777655 3666655566554443
No 196
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.3e-21 Score=167.18 Aligned_cols=145 Identities=17% Similarity=0.241 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++| ++|+|.+.|.+.. ...+.| +++ .++++++.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~ 114 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKI 114 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHh
Confidence 5789999999999999999999987 4899999886532 123444 221 34554432
Q ss_pred ------------HHHHHHHhCCCCC--CCchhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPN--GGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~--g~~~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++.+++.+. .........+. ++++++||++++. +|+++|+|||++ +|+.++..++ +
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 191 (254)
T PRK14273 115 HGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI--EPNVILMDEPTSALDPISTGKIE-E 191 (254)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH-H
Confidence 2334445555211 00000001111 2334999999999 999999999999 9999999998 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+++++++ +.+++++ +|.......+++.++.
T Consensus 192 ~l~~~~~-~~tvii~----sH~~~~~~~~~d~i~~ 221 (254)
T PRK14273 192 LIINLKE-SYTIIIV----THNMQQAGRISDRTAF 221 (254)
T ss_pred HHHHHhc-CCEEEEE----eCCHHHHHHhCCEEEE
Confidence 8888854 6777655 4666655556554443
No 197
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5.6e-21 Score=187.38 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=108.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc----------cCCCCC-Cc--------ccChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-PV--------AMDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~----------~~~~~y-~~--------~~~i~~~i~------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|++.|.+.. ...++| +| ..++.+.+.
T Consensus 352 ~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~ 431 (623)
T PRK10261 352 TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH 431 (623)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999999999999999887542 123444 22 234444321
Q ss_pred -----------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025642 59 -----------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (250)
Q Consensus 59 -----------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~ 125 (250)
+.++++.+|+.+.....+..+... +++++.||++|+. +|++||+||||+ ||+.++..++ +++++
T Consensus 432 ~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~--~p~llllDEPts~LD~~~~~~i~-~ll~~ 508 (623)
T PRK10261 432 GLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALAL--NPKVIIADEAVSALDVSIRGQII-NLLLD 508 (623)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 446778888853211111112222 3345999999999 999999999999 9999999999 99999
Q ss_pred HHhC-CCeEEEEEeccccccccHHHHHHhhHHhhhhH
Q 025642 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 126 l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (250)
++++ |.+++++. |.+.....+++.+++...+.
T Consensus 509 l~~~~g~tvi~is----Hdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 509 LQRDFGIAYLFIS----HDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred HHHhcCCEEEEEe----CCHHHHHHhCCEEEEEECCE
Confidence 8764 88887664 77776677776665544443
No 198
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=8.3e-21 Score=168.82 Aligned_cols=136 Identities=11% Similarity=0.102 Sum_probs=96.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| ++ ..++.+.+.
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~ 114 (277)
T PRK13642 35 WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPR 114 (277)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCH
Confidence 589999999999999999999999999999999876521 22333 11 124444432
Q ss_pred ------HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025642 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (250)
Q Consensus 59 ------~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~ 130 (250)
++++++.+++..........-...+++++.||++++. +|+++|+|||++ ||+.++..+. +++++++++ |
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~~g 191 (277)
T PRK13642 115 EEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL--RPEIIILDESTSMLDPTGRQEIM-RVIHEIKEKYQ 191 (277)
T ss_pred HHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 2455666676543211000011112334999999999 999999999999 9999999999 888888764 8
Q ss_pred CeEEEEEecccccccc
Q 025642 131 FNVCAVYLLDSQFITD 146 (250)
Q Consensus 131 ~~vi~v~l~d~~~~~d 146 (250)
.+++++. |....
T Consensus 192 ~tiil~s----H~~~~ 203 (277)
T PRK13642 192 LTVLSIT----HDLDE 203 (277)
T ss_pred CEEEEEe----CCHHH
Confidence 8887663 55544
No 199
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.84 E-value=1.5e-20 Score=157.06 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=85.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCC-CcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y-~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+ +.| ++... -.+ .
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~q~~~-----------------LSg---------G 75 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----PVYKPQYID-----------------LSG---------G 75 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----EEEEcccCC-----------------CCH---------H
Confidence 689999999999999999999999999999998754 233 22111 111 1
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC-CeEEEEEeccccccccHHHHHHh
Q 025642 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN-FNVCAVYLLDSQFITDVTKFISG 153 (250)
Q Consensus 83 ~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~-~~vi~v~l~d~~~~~d~~~~~s~ 153 (250)
+++++.+|++++. +|+++++|||++ +|+.++..+. ++++++++++ .+++++ +|.......+++.
T Consensus 76 q~qrv~laral~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~~~~tiiiv----sH~~~~~~~~~d~ 141 (177)
T cd03222 76 ELQRVAIAAALLR--NATFYLFDEPSAYLDIEQRLNAA-RAIRRLSEEGKKTALVV----EHDLAVLDYLSDR 141 (177)
T ss_pred HHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEE----ECCHHHHHHhCCE
Confidence 2345999999999 999999999999 9999999988 8888876654 777655 3666554445443
No 200
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.84 E-value=8.9e-21 Score=180.00 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=115.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC--cc-------CCC---------CCCcccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AA-------ENF---------DYPVAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp--~~-------~~~---------~y~~~~~i~~~i~------- 58 (250)
+++|+|++||||||+.|+|+|+.+|++|.|.+.|.+. .. ..+ ...|..+|++.+.
T Consensus 319 ~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~ 398 (539)
T COG1123 319 TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHG 398 (539)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhc
Confidence 5799999999999999999999999999999999761 10 011 1134456666554
Q ss_pred ----------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 59 ----------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 59 ----------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
+.++++..+|+++-...|+.+... ++++++||+||+. +|+++|+|||++ ||+..+.+++ +++.++
T Consensus 399 ~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~--~P~lli~DEp~SaLDvsvqa~Vl-nLl~~l 475 (539)
T COG1123 399 GGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALAL--EPKLLILDEPVSALDVSVQAQVL-NLLKDL 475 (539)
T ss_pred ccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhc--CCCEEEecCCccccCHHHHHHHH-HHHHHH
Confidence 667799999997644444444443 3456999999999 999999999999 9999999999 999999
Q ss_pred HhC-CCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 127 KSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 127 ~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
+++ |.+.++| ||++.-...+++++.+...+.+
T Consensus 476 q~e~g~t~lfI----SHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 476 QEELGLTYLFI----SHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred HHHhCCEEEEE----eCCHHHHHhhCceEEEEECCeE
Confidence 865 8887766 4777766777766555444443
No 201
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.84 E-value=1.4e-20 Score=179.95 Aligned_cols=146 Identities=14% Similarity=0.200 Sum_probs=103.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCceEEEeecCCc--------cCCCCC-Ccc---------cChhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPA--------AENFDY-PVA---------MDIRELI------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~dp~--------~~~~~y-~~~---------~~i~~~i------- 57 (250)
+++|+||||||||||+++|+|+++| ++|+|.+.|.++. ...++| +++ .++++.+
T Consensus 288 ~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~ 367 (500)
T TIGR02633 288 ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKS 367 (500)
T ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhh
Confidence 5899999999999999999999995 8999999886542 122333 111 2222221
Q ss_pred --------------hHHHHHHHhCCCC-CCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 58 --------------SLEDVMEELGLGP-NGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 58 --------------~~~~vm~~~~L~~-~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
.++++++++++.. ..... ..... .+++++.||++++. +|+++|+||||+ ||+.++..++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~- 443 (500)
T TIGR02633 368 FCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-IGRLSGGNQQKAVLAKMLLT--NPRVLILDEPTRGVDVGAKYEIY- 443 (500)
T ss_pred hccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-cccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHHH-
Confidence 1456778888853 21111 01111 23344999999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+++++++++|.+++++ +|.+.....+++.++..
T Consensus 444 ~~l~~l~~~g~tviiv----sHd~~~~~~~~d~v~~l 476 (500)
T TIGR02633 444 KLINQLAQEGVAIIVV----SSELAEVLGLSDRVLVI 476 (500)
T ss_pred HHHHHHHhCCCEEEEE----CCCHHHHHHhCCEEEEE
Confidence 8999998778888665 47777777776665543
No 202
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.83 E-value=6e-21 Score=165.46 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=85.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~----------~~ 60 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| +++ .++.+.+. +.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~ 109 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVI 109 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHH
Confidence 589999999999999999999999999999999876421 22333 221 24444432 11
Q ss_pred HHHHHhCC-----------CCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 61 DVMEELGL-----------GPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 61 ~vm~~~~L-----------~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++..++ ...... ...+.. .++++++||++++. +|+++|+|||++ +|+.++..+. +++++++
T Consensus 110 ~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~LSgG~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 185 (237)
T cd03252 110 EAAKLAGAHDFISELPEGYDTIVGE-QGAGLSGGQRQRIAIARALIH--NPRILIFDEATSALDYESEHAIM-RNMHDIC 185 (237)
T ss_pred HHHHHcCcHHHHHhCcccccchhhc-CCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc
Confidence 11222221 110000 000111 12234999999999 999999999999 9999999998 8888886
Q ss_pred hCCCeEEEE
Q 025642 128 SRNFNVCAV 136 (250)
Q Consensus 128 ~~~~~vi~v 136 (250)
+ |.+++++
T Consensus 186 ~-~~tiii~ 193 (237)
T cd03252 186 A-GRTVIII 193 (237)
T ss_pred C-CCEEEEE
Confidence 4 7777655
No 203
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=7.3e-21 Score=173.09 Aligned_cols=152 Identities=13% Similarity=0.176 Sum_probs=107.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC----CCceEEEeecCCcc-----------CCCCC-Cc--------ccChhhhh--
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----------ENFDY-PV--------AMDIRELI-- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~----~~G~i~i~~~dp~~-----------~~~~y-~~--------~~~i~~~i-- 57 (250)
+++|+||||||||||+++|+|++++ ++|+|.+.|.+... ..+.| +| ..++.+.+
T Consensus 35 ~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~ 114 (326)
T PRK11022 35 VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIME 114 (326)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHH
Confidence 5899999999999999999999974 89999999987521 12444 22 22333221
Q ss_pred ---------------hHHHHHHHhCCCCCCC--chhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHH
Q 025642 58 ---------------SLEDVMEELGLGPNGG--LIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (250)
Q Consensus 58 ---------------~~~~vm~~~~L~~~g~--~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i 118 (250)
.+.++++++|+.+... ..+..+... +.+++.||++|+. +|+++|+||||+ ||+.++..+
T Consensus 115 ~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~--~P~llilDEPts~LD~~~~~~i 192 (326)
T PRK11022 115 AIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIAC--RPKLLIADEPTTALDVTIQAQI 192 (326)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHH
Confidence 1456788888864210 011112222 2345999999999 999999999999 999999999
Q ss_pred HHHHHHHHHh-CCCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 119 ~~~ll~~l~~-~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
+ ++++++++ .|.+++++ +|.+.....+++.++....+.+
T Consensus 193 l-~lL~~l~~~~g~til~i----THdl~~~~~~adri~vm~~G~i 232 (326)
T PRK11022 193 I-ELLLELQQKENMALVLI----THDLALVAEAAHKIIVMYAGQV 232 (326)
T ss_pred H-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCCEEEEEECCEE
Confidence 9 99999876 48888766 4777666667666655544443
No 204
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2e-20 Score=163.54 Aligned_cols=146 Identities=18% Similarity=0.182 Sum_probs=99.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCcc-------CCCCC-C------cccChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-------ENFDY-P------VAMDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~~-------~~~~y-~------~~~~i~~~i~------ 58 (250)
+++|+||||||||||+++|+|+++| ++|+|.+.|.+... ..++| + +..++.+++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~ 110 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLN 110 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhc
Confidence 5899999999999999999999974 69999999876421 22333 1 2234544442
Q ss_pred ------------HHHHHHHhCCCCC--CCchhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPN--GGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~--g~~~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++.+++.+. .........+. ++++++||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~-~ 187 (250)
T PRK14247 111 RLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF--QPEVLLADEPTANLDPENTAKIE-S 187 (250)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-H
Confidence 2345666776431 00000011111 2334999999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+++++++ +.+++++ +|.......+++.++..
T Consensus 188 ~l~~~~~-~~tiii~----sH~~~~~~~~~d~i~~l 218 (250)
T PRK14247 188 LFLELKK-DMTIVLV----THFPQQAARISDYVAFL 218 (250)
T ss_pred HHHHHhc-CCEEEEE----eCCHHHHHHhcCEEEEE
Confidence 8888854 6777655 46666555565554433
No 205
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=3.6e-20 Score=163.19 Aligned_cols=146 Identities=17% Similarity=0.171 Sum_probs=100.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEE-----------EeecCCcc-------C--CCCC-Cccc-----C----h
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------E--NFDY-PVAM-----D----I 53 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~-----------i~~~dp~~-------~--~~~y-~~~~-----~----i 53 (250)
+++|+||||||||||+++|+|+++|++|+|. +.|.+... . .+.| ++.. . +
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i 107 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKV 107 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHHHHH
Confidence 5899999999999999999999999999996 55655311 0 1111 1110 1 1
Q ss_pred hhh-------hhHHHHHHHhCCCCCCCc-hhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 54 REL-------ISLEDVMEELGLGPNGGL-IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 54 ~~~-------i~~~~vm~~~~L~~~g~~-~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
.+. -.+.++++.+|+.+.... ...+. ..+++++.||++++. +|+++|+|||++ +|+.++..+. ++++
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS-~G~~qrv~laral~~--~p~illlDEPts~LD~~~~~~l~-~~l~ 183 (255)
T cd03236 108 GELLKKKDERGKLDELVDQLELRHVLDRNIDQLS-GGELQRVAIAAALAR--DADFYFFDEPSSYLDIKQRLNAA-RLIR 183 (255)
T ss_pred HHHhchhHHHHHHHHHHHHcCCchhhcCChhhCC-HHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHH-HHHH
Confidence 111 126778888988653211 11111 122344999999999 999999999999 9999999998 8999
Q ss_pred HHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 125 ~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++++++.+++++. |.......+++.++..
T Consensus 184 ~l~~~~~tIIiiS----Hd~~~~~~~ad~i~~l 212 (255)
T cd03236 184 ELAEDDNYVLVVE----HDLAVLDYLSDYIHCL 212 (255)
T ss_pred HHHhcCCEEEEEE----CCHHHHHHhCCEEEEE
Confidence 9877778876663 6665555555554433
No 206
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.83 E-value=1.9e-20 Score=164.00 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=102.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc------ccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV------AMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~------~~~i~~~i~----------- 58 (250)
+++|+||||||||||+++|+|+++ .+|+|.++|.+... ..+.| ++ ..++.+++.
T Consensus 24 i~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~ 102 (248)
T PRK03695 24 ILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEA 102 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCCCcHH
Confidence 689999999999999999999986 48999999876421 12333 21 223444332
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhc-----CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDN-----YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~-----~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++++.+++.+........-...+++++.||++++. -.+|+++|+|||++ +|+.++..+. ++++++++
T Consensus 103 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~ 181 (248)
T PRK03695 103 VASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALD-RLLSELCQ 181 (248)
T ss_pred HHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHh
Confidence 4567777887643211100011123344899999984 11569999999999 9999999988 88888876
Q ss_pred CCCeEEEEEeccccccccHHHHHHhhHHhhh
Q 025642 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (250)
++.+++++ +|.......+++.++....
T Consensus 182 ~~~tvi~~----sH~~~~~~~~~d~i~~l~~ 208 (248)
T PRK03695 182 QGIAVVMS----SHDLNHTLRHADRVWLLKQ 208 (248)
T ss_pred CCCEEEEE----ecCHHHHHHhCCEEEEEEC
Confidence 68888665 4776666666665554433
No 207
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.83 E-value=1.4e-20 Score=163.30 Aligned_cols=141 Identities=15% Similarity=0.131 Sum_probs=91.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~----------~~ 60 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| +++ .++++.+. ..
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~ 110 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVE 110 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHH
Confidence 589999999999999999999999999999999865421 22344 221 24444432 11
Q ss_pred HHHHHhCCC-----------CCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 61 DVMEELGLG-----------PNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 61 ~vm~~~~L~-----------~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++..++. ...... ..+.. .+.+++.||++++. +|+++|+|||++ +|+.++..+. +++++++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~LS~G~~qrv~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~ 186 (238)
T cd03249 111 EAAKKANIHDFIMSLPDGYDTLVGER-GSQLSGGQKQRIAIARALLR--NPKILLLDEATSALDAESEKLVQ-EALDRAM 186 (238)
T ss_pred HHHHHcChHHHHHhhccccceeeccC-CccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence 111212221 100000 00111 12334899999999 999999999999 9999999988 8888886
Q ss_pred hCCCeEEEEEeccccccccHHHHHHhh
Q 025642 128 SRNFNVCAVYLLDSQFITDVTKFISGC 154 (250)
Q Consensus 128 ~~~~~vi~v~l~d~~~~~d~~~~~s~~ 154 (250)
+|.+++++. |...+.. +++.+
T Consensus 187 -~g~~vi~~s----h~~~~~~-~~d~v 207 (238)
T cd03249 187 -KGRTTIVIA----HRLSTIR-NADLI 207 (238)
T ss_pred -CCCEEEEEe----CCHHHHh-hCCEE
Confidence 677776553 5554433 44433
No 208
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.83 E-value=7.8e-21 Score=173.20 Aligned_cols=150 Identities=14% Similarity=0.153 Sum_probs=105.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC---CceEEEeecCCcc-----------CCCCC-Cc--------ccChhhhhh--
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA-----------ENFDY-PV--------AMDIRELIS-- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~i~i~~~dp~~-----------~~~~y-~~--------~~~i~~~i~-- 58 (250)
+++|+|+||||||||+++|+|+++|. +|+|.++|.+... ..+.| +| ..++.+.+.
T Consensus 44 ~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~ 123 (330)
T PRK09473 44 TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEV 123 (330)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHH
Confidence 58999999999999999999999986 9999999987521 23444 22 233333221
Q ss_pred ---------------HHHHHHHhCCCCCCC--chhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025642 59 ---------------LEDVMEELGLGPNGG--LIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (250)
Q Consensus 59 ---------------~~~vm~~~~L~~~g~--~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~ 119 (250)
+.++++.+++.+... ..+..+... +.++++||++|+. +|+++|+||||+ ||+.++..++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~--~P~llilDEPts~LD~~~~~~i~ 201 (330)
T PRK09473 124 LMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLC--RPKLLIADEPTTALDVTVQAQIM 201 (330)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH
Confidence 456677788753110 011111121 2345999999999 999999999999 9999999999
Q ss_pred HHHHHHHHhC-CCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 120 RNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 120 ~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
+++++++++ |.+++++. |.+.....+++.++....+
T Consensus 202 -~lL~~l~~~~g~til~iT----Hdl~~~~~~~Dri~vm~~G 238 (330)
T PRK09473 202 -TLLNELKREFNTAIIMIT----HDLGVVAGICDKVLVMYAG 238 (330)
T ss_pred -HHHHHHHHHcCCEEEEEE----CCHHHHHHhCCEEEEEECC
Confidence 899998764 88887664 6666555565555444333
No 209
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.8e-20 Score=164.90 Aligned_cols=144 Identities=19% Similarity=0.281 Sum_probs=98.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++| ++|+|.+.|.+.. ...+.| +++ .++++++.
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~ 119 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRI 119 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHH
Confidence 5899999999999999999999875 7999999886542 122444 221 34444432
Q ss_pred -----------HHHHHHHhCCCCC--CCchhhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025642 59 -----------LEDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (250)
Q Consensus 59 -----------~~~vm~~~~L~~~--g~~~~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~l 122 (250)
+.++++.+++... .........+ .+.+++.||++++. +|+++|+||||+ +|+.++..+. ++
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~ 196 (258)
T PRK14268 120 HGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV--KPKIILFDEPTSALDPISTARIE-DL 196 (258)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH-HH
Confidence 3346666766321 0000001111 12344999999999 999999999999 9999999988 88
Q ss_pred HHHHHhCCCeEEEEEeccccccccHHHHHHhhH
Q 025642 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 123 l~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
++++++ +.+++++ +|...+...+++.++
T Consensus 197 l~~l~~-~~tiiiv----sH~~~~~~~~~d~i~ 224 (258)
T PRK14268 197 IMNLKK-DYTIVIV----THNMQQAARISDYTG 224 (258)
T ss_pred HHHHhh-CCEEEEE----ECCHHHHHHhCCEEE
Confidence 888864 6777655 466665556655443
No 210
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.83 E-value=2.4e-20 Score=153.52 Aligned_cols=124 Identities=13% Similarity=0.172 Sum_probs=88.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~ 83 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+..... .++. .-...++-+ .+. ..+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~--------~~~~-----~~~~i~~~~------qLS-~G~ 87 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS--------PRDA-----RRAGIAMVY------QLS-VGE 87 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC--------HHHH-----HhcCeEEEE------ecC-HHH
Confidence 57899999999999999999999999999999887643210 0000 000111100 011 112
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhh
Q 025642 84 NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~ 154 (250)
.+++.+|++++. +|+++|+|||++ +|+.++..+. ++++++++++.+++++. |...+...+++.+
T Consensus 88 ~qrl~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~s----h~~~~~~~~~d~~ 152 (163)
T cd03216 88 RQMVEIARALAR--NARLLILDEPTAALTPAEVERLF-KVIRRLRAQGVAVIFIS----HRLDEVFEIADRV 152 (163)
T ss_pred HHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEe----CCHHHHHHhCCEE
Confidence 344999999999 999999999999 9999999998 88888876677876653 6655555555443
No 211
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=2.9e-20 Score=158.00 Aligned_cols=139 Identities=17% Similarity=0.189 Sum_probs=93.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC---CCCceEEEeecCCcc------CCCCC-C------cccChhhhhhHHHHHHHhC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA------ENFDY-P------VAMDIRELISLEDVMEELG 67 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~---~~~G~i~i~~~dp~~------~~~~y-~------~~~~i~~~i~~~~vm~~~~ 67 (250)
+++|+||||||||||+++|+|+++ |++|+|.+.|.+... ..+.| + +..++++++.....+ .
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---~ 111 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC---K 111 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhh---c
Confidence 689999999999999999999999 899999999876532 22334 2 224566655422111 1
Q ss_pred CCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccc
Q 025642 68 LGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFI 144 (250)
Q Consensus 68 L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~vi~v~l~d~~~~ 144 (250)
.... ..... .+.+++.||++++. +|+++|+|||++ +|+.++..+. ++++++.++ +.+++++. +|..
T Consensus 112 ~~~~-----~~~LS~Ge~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~t~ii~~---~h~~ 180 (202)
T cd03233 112 GNEF-----VRGISGGERKRVSIAEALVS--RASVLCWDNSTRGLDSSTALEIL-KCIRTMADVLKTTTFVSL---YQAS 180 (202)
T ss_pred cccc-----hhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEEE---cCCH
Confidence 1111 01111 22344899999999 999999999999 9999999999 888888764 55544332 2434
Q ss_pred ccHHHHHHhhHH
Q 025642 145 TDVTKFISGCMA 156 (250)
Q Consensus 145 ~d~~~~~s~~l~ 156 (250)
.+...+++.+++
T Consensus 181 ~~~~~~~d~i~~ 192 (202)
T cd03233 181 DEIYDLFDKVLV 192 (202)
T ss_pred HHHHHhCCeEEE
Confidence 444555554443
No 212
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=9.4e-21 Score=163.33 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=86.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-------cCCCCC-Ccc-----cChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PVA-----MDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-------~~~~~y-~~~-----~~i~~~i~----------~~ 60 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++. ...+.| +++ .++.+.+. +.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~ 110 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVI 110 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHH
Confidence 57999999999999999999999999999999886542 122444 221 13333332 22
Q ss_pred HHHHHhCCCCCC-----Cchh----hhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 61 DVMEELGLGPNG-----GLIY----CMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 61 ~vm~~~~L~~~g-----~~~~----~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++.+++.... +... ....+ .+++++.||++++. +|+++|+|||++ ||+.++..++ +++++++
T Consensus 111 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~- 186 (229)
T cd03254 111 EAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR--DPKILILDEATSNIDTETEKLIQ-EALEKLM- 186 (229)
T ss_pred HHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc-
Confidence 223333322100 0000 00111 12334999999999 999999999999 9999999988 8888885
Q ss_pred CCCeEEEEE
Q 025642 129 RNFNVCAVY 137 (250)
Q Consensus 129 ~~~~vi~v~ 137 (250)
++.+++++.
T Consensus 187 ~~~tii~~s 195 (229)
T cd03254 187 KGRTSIIIA 195 (229)
T ss_pred CCCEEEEEe
Confidence 477776553
No 213
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.83 E-value=1.3e-20 Score=161.52 Aligned_cols=142 Identities=18% Similarity=0.158 Sum_probs=95.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-------cCCCCC-Ccc-----cChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PVA-----MDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-------~~~~~y-~~~-----~~i~~~i~----------~~ 60 (250)
+++|+||||||||||+++|+|+.+|++|+|.+.|.+.. ...+.| +++ .++.+.+. +.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~ 111 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERIL 111 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHH
Confidence 58999999999999999999999999999999886532 112333 221 24554442 34
Q ss_pred HHHHHhCCCCCCCch----------hhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 61 DVMEELGLGPNGGLI----------YCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 61 ~vm~~~~L~~~g~~~----------~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
++++.+++.+..... ...+... +++++.||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 112 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~ 188 (220)
T cd03245 112 RAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN--DPPILLLDEPTSAMDMNSEERLK-ERLRQLLG 188 (220)
T ss_pred HHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhcC
Confidence 455566654310000 0001111 2344999999999 999999999999 9999999998 88888865
Q ss_pred CCCeEEEEEeccccccccHHHHHHhh
Q 025642 129 RNFNVCAVYLLDSQFITDVTKFISGC 154 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d~~~~~s~~ 154 (250)
+ .+++++. |..... .+++.+
T Consensus 189 ~-~tii~~s----H~~~~~-~~~d~v 208 (220)
T cd03245 189 D-KTLIIIT----HRPSLL-DLVDRI 208 (220)
T ss_pred C-CEEEEEe----CCHHHH-HhCCEE
Confidence 3 6665553 555433 344433
No 214
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.83 E-value=2.1e-20 Score=161.01 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=88.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| +++ .++++++.
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~ 121 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVK 121 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHH
Confidence 579999999999999999999999999999998865421 12333 211 13333322
Q ss_pred -------HHHHHHHh--CCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 -------LEDVMEEL--GLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 -------~~~vm~~~--~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
++++++.+ |+.+...... .+.. .++++++||++++. +|+++|+|||++ +|+.++..+. +++++++
T Consensus 122 ~~~~~~~~~~~l~~l~~gl~~~~~~~~-~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 197 (226)
T cd03248 122 EAAQKAHAHSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIR--NPQVLILDEATSALDAESEQQVQ-QALYDWP 197 (226)
T ss_pred HHHHHcCcHHHHHhccccccchhhcCC-CcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc
Confidence 23444555 4443211100 0111 12344999999999 999999999999 9999999988 8888886
Q ss_pred hCCCeEEEEE
Q 025642 128 SRNFNVCAVY 137 (250)
Q Consensus 128 ~~~~~vi~v~ 137 (250)
+ +.+++++.
T Consensus 198 ~-~~tii~~s 206 (226)
T cd03248 198 E-RRTVLVIA 206 (226)
T ss_pred C-CCEEEEEE
Confidence 5 56766553
No 215
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=2.1e-20 Score=154.75 Aligned_cols=113 Identities=21% Similarity=0.248 Sum_probs=82.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-CcccChhhhhhHHHHHHHhCCCCCCCch
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAMDIRELISLEDVMEELGLGPNGGLI 75 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~~~i~~~i~~~~vm~~~~L~~~g~~~ 75 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| +++..+.+. ++.+.+ -
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~-t~~e~l------L----- 97 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSG-TIRENI------L----- 97 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccc-hHHHHh------h-----
Confidence 579999999999999999999999999999999876421 12333 222211111 222211 1
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 76 YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 76 ~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
. ..+++++.||++++. +|+++|+|||++ +|+.++..+. ++++++++ +.+++++
T Consensus 98 ---S-~G~~~rl~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~tii~~ 151 (171)
T cd03228 98 ---S-GGQRQRIAIARALLR--DPPILILDEATSALDPETEALIL-EALRALAK-GKTVIVI 151 (171)
T ss_pred ---C-HHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHhcC-CCEEEEE
Confidence 1 122345899999999 999999999999 9999999988 88888854 6676655
No 216
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=1.3e-20 Score=167.47 Aligned_cols=164 Identities=20% Similarity=0.199 Sum_probs=118.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------------------CCCCCCcccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------------------~~~~y~~~~~i~~~i~------- 58 (250)
+.+|+|-+|||||||++++.++++|++|+|.+.|.|+.. ++++..|..++-+++.
T Consensus 56 IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~G 135 (386)
T COG4175 56 IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQG 135 (386)
T ss_pred EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecC
Confidence 568999999999999999999999999999999998743 3445555666666554
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+.++++..||...... |.-+... .++++-|||||+. +|+++++|||++ |||-.+.++- +-+.+|+
T Consensus 136 v~~~er~~~a~~~l~~VgL~~~~~~-yp~eLSGGMqQRVGLARAla~--~~~IlLMDEaFSALDPLIR~~mQ-deLl~Lq 211 (386)
T COG4175 136 VPKAEREERALEALELVGLEGYADK-YPNELSGGMQQRVGLARALAN--DPDILLMDEAFSALDPLIRTEMQ-DELLELQ 211 (386)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhc-CcccccchHHHHHHHHHHHcc--CCCEEEecCchhhcChHHHHHHH-HHHHHHH
Confidence 6788899999876411 1111111 2345999999999 999999999999 9999999977 4444555
Q ss_pred -hCCCeEEEEEeccccccccHHHHHHhhHHhhhh-HhHhcCCeeeecCch
Q 025642 128 -SRNFNVCAVYLLDSQFITDVTKFISGCMASLSA-MVQLELPHVNILSKM 175 (250)
Q Consensus 128 -~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~-~~~~~~p~v~vlsK~ 175 (250)
+.++||++|. |.+.+.-++=+++.....+ .++.+.|..-+.+..
T Consensus 212 ~~l~KTIvFit----HDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 212 AKLKKTIVFIT----HDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred HHhCCeEEEEe----cCHHHHHhccceEEEecCCeEEEeCCHHHHHcCcc
Confidence 4588987764 7776666665555444333 345666655444443
No 217
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.6e-20 Score=163.08 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=98.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCc---------cCCCCC-Cc------ccChhhhhh----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PV------AMDIRELIS---- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~---------~~~~~y-~~------~~~i~~~i~---- 58 (250)
+++|+||||||||||+++|+|+++| ++|+|.++|.++. ...+.| ++ ..++.+++.
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 111 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVK 111 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHH
Confidence 5799999999999999999999987 4999999987642 123444 22 234444432
Q ss_pred --------------HHHHHHHhCCCCCC-C-chhhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025642 59 --------------LEDVMEELGLGPNG-G-LIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (250)
Q Consensus 59 --------------~~~vm~~~~L~~~g-~-~~~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~ 119 (250)
+.++++.+++.+.- . .......+ .+++++.||++++. +|+++|+|||++ +|+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~ 189 (253)
T PRK14267 112 LNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM--KPKILLMDEPTANIDPVGTAKIE 189 (253)
T ss_pred hcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH
Confidence 23445566653210 0 00001111 12334999999999 999999999999 9999999988
Q ss_pred HHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 120 ~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++++++++ +.+++++ +|.......+++.++..
T Consensus 190 -~~l~~~~~-~~tiii~----sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 190 -ELLFELKK-EYTIVLV----THSPAQAARVSDYVAFL 221 (253)
T ss_pred -HHHHHHhh-CCEEEEE----ECCHHHHHhhCCEEEEE
Confidence 88888865 5677655 46666556666654443
No 218
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.83 E-value=3.5e-20 Score=177.21 Aligned_cols=147 Identities=15% Similarity=0.121 Sum_probs=102.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--CCceEEEeecCCcc--------CCCCC-Cc------ccChhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELI--------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~i~i~~~dp~~--------~~~~y-~~------~~~i~~~i--------- 57 (250)
+++|+||||||||||+++|+|+++| ++|+|.+.|.+... ..++| ++ ..++.+.+
T Consensus 29 ~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~ 108 (500)
T TIGR02633 29 CVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLP 108 (500)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhcccccc
Confidence 6899999999999999999999987 79999998865421 22334 22 22333322
Q ss_pred -----------hHHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 58 -----------SLEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 58 -----------~~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
.++++++.+++..........+... +++++.||++++. +|+++|+||||+ ||+.++..+. ++++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~ 185 (500)
T TIGR02633 109 GGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK--QARLLILDEPSSSLTEKETEILL-DIIR 185 (500)
T ss_pred ccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHH
Confidence 1456677888864321011112222 3344999999999 999999999999 9999999999 8899
Q ss_pred HHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 125 ~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+++++|.+++++. |.......+++.++..
T Consensus 186 ~l~~~g~tviiit----Hd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 186 DLKAHGVACVYIS----HKLNEVKAVCDTICVI 214 (500)
T ss_pred HHHhCCCEEEEEe----CcHHHHHHhCCEEEEE
Confidence 9877788876653 5555555555544443
No 219
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.3e-20 Score=170.03 Aligned_cols=152 Identities=14% Similarity=0.208 Sum_probs=107.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC----CCCceEEEeecCCcc-----------CCCCC-Ccc--------cChhhhh--
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDY-PVA--------MDIRELI-- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~----~~~G~i~i~~~dp~~-----------~~~~y-~~~--------~~i~~~i-- 57 (250)
+++|+|+||||||||+++|+|+++ +++|+|.++|.+... ..+.| +|+ .++.+.+
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~ 114 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQ 114 (330)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHH
Confidence 589999999999999999999986 589999999876521 13444 221 2222221
Q ss_pred --------------------hHHHHHHHhCCCCCCC--chhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHH
Q 025642 58 --------------------SLEDVMEELGLGPNGG--LIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (250)
Q Consensus 58 --------------------~~~~vm~~~~L~~~g~--~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~ 113 (250)
.+.++++++||.+... ..+..+... +++++.||++|+. +|+++|+||||+ ||+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD~~ 192 (330)
T PRK15093 115 NIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALAN--QPRLLIADEPTNAMEPT 192 (330)
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHC--CCCEEEEeCCCCcCCHH
Confidence 1456778888864210 111112222 3345999999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHhC-CCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 114 THVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 114 ~~~~i~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
++.+++ +++++++++ |.++++|. |.+.....+++.++....+.+
T Consensus 193 ~~~~i~-~lL~~l~~~~g~tii~it----Hdl~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 193 TQAQIF-RLLTRLNQNNNTTILLIS----HDLQMLSQWADKINVLYCGQT 237 (330)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEEE----CCHHHHHHhCCEEEEEECCEE
Confidence 999999 999998764 88887664 777777777776655544443
No 220
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.83 E-value=2.6e-20 Score=178.96 Aligned_cols=147 Identities=14% Similarity=0.106 Sum_probs=102.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEe-ecC---C----------ccCCCCC-Cc------ccChhhhhh----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLD---P----------AAENFDY-PV------AMDIRELIS---- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~-~~d---p----------~~~~~~y-~~------~~~i~~~i~---- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+. |.+ . ....++| ++ ..++.+.+.
T Consensus 312 ~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 391 (520)
T TIGR03269 312 IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG 391 (520)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHH
Confidence 589999999999999999999999999999995 531 1 0122444 22 234555442
Q ss_pred -----------HHHHHHHhCCCCCC----Cchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 -----------LEDVMEELGLGPNG----GLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 -----------~~~vm~~~~L~~~g----~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++.+++.... ...+..+... +++++.||++++. +|+++|+||||+ ||+.++..++ +
T Consensus 392 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lLllDEPt~~LD~~~~~~l~-~ 468 (520)
T TIGR03269 392 LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK--EPRIVILDEPTGTMDPITKVDVT-H 468 (520)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-H
Confidence 34567778886410 0011111111 2344999999999 999999999999 9999999999 8
Q ss_pred HHHHHHhC-CCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 122 ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++++++++ |.+++++. |.......+++.++..
T Consensus 469 ~l~~l~~~~g~tvi~vs----Hd~~~~~~~~d~i~~l 501 (520)
T TIGR03269 469 SILKAREEMEQTFIIVS----HDMDFVLDVCDRAALM 501 (520)
T ss_pred HHHHHHHHcCcEEEEEe----CCHHHHHHhCCEEEEE
Confidence 88888654 88887664 7776666666655443
No 221
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.2e-20 Score=163.40 Aligned_cols=145 Identities=17% Similarity=0.199 Sum_probs=97.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++ |++|+|.+.|.++. ...+.| +++ .++++++.
T Consensus 41 ~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~ 120 (260)
T PRK10744 41 VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRL 120 (260)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhh
Confidence 589999999999999999999986 48999999886642 122334 221 24444332
Q ss_pred ------------HHHHHHHhCCCCCC-Cch-hhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNG-GLI-YCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g-~~~-~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++.+++.+.- ... .....+ .+.+++.||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 121 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 197 (260)
T PRK10744 121 FEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI--RPEVLLLDEPCSALDPISTGRIE-E 197 (260)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCCCccCCHHHHHHHH-H
Confidence 34556677763210 000 000111 12344999999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+++++++ +.+++++ +|...+...+++.++.
T Consensus 198 ~L~~~~~-~~tiii~----sH~~~~~~~~~d~i~~ 227 (260)
T PRK10744 198 LITELKQ-DYTVVIV----THNMQQAARCSDYTAF 227 (260)
T ss_pred HHHHHhc-CCeEEEE----eCCHHHHHHhCCEEEE
Confidence 8888854 6676555 4666555555554443
No 222
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.3e-19 Score=152.81 Aligned_cols=118 Identities=16% Similarity=0.265 Sum_probs=87.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC--CCCCceEEEeecCCc---cCCCCC-C------cccChhhhhhHHHHHHHhCCCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPA---AENFDY-P------VAMDIRELISLEDVMEELGLGPN 71 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~i~i~~~dp~---~~~~~y-~------~~~~i~~~i~~~~vm~~~~L~~~ 71 (250)
+++|+||||||||||+++|+|.. +|++|+|.++|.+.. ...+.| + +..++++++.....++ .-.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~LS 110 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR----GLS 110 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh----cCC
Confidence 57999999999999999999986 489999999987642 122333 2 2345666654322211 111
Q ss_pred CCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 72 GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 72 g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
..+.+++.||++++. +|+++|+|||++ +|+.++..++ ++++++++.+.+++++.
T Consensus 111 ---------gGe~qrv~la~al~~--~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiiivt 165 (192)
T cd03232 111 ---------VEQRKRLTIGVELAA--KPSILFLDEPTSGLDSQAAYNIV-RFLKKLADSGQAILCTI 165 (192)
T ss_pred ---------HHHhHHHHHHHHHhc--CCcEEEEeCCCcCCCHHHHHHHH-HHHHHHHHcCCEEEEEE
Confidence 112344999999999 999999999999 9999999998 88888876678876663
No 223
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.82 E-value=5.8e-20 Score=157.57 Aligned_cols=140 Identities=10% Similarity=-0.085 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEE-EeecCCc-cCCCCCCcccChhhhhhH------------H-HHHHHhCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-IVNLDPA-AENFDYPVAMDIRELISL------------E-DVMEELGL 68 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~-i~~~dp~-~~~~~y~~~~~i~~~i~~------------~-~vm~~~~L 68 (250)
+++|+||||||||||+++|+|+++|++|+|. +.|.... .....+++..++++++.. . .+.+..++
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~l 94 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQL 94 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhCh
Confidence 6899999999999999999999999999997 6554321 111223455566666541 1 11223333
Q ss_pred CCCCCchhhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH-HHHHhCCCeEEEEEecccccc
Q 025642 69 GPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV-DHLKSRNFNVCAVYLLDSQFI 144 (250)
Q Consensus 69 ~~~g~~~~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll-~~l~~~~~~vi~v~l~d~~~~ 144 (250)
+...... ...+ .+++++++|++++. +|+++|+|||++ +|+.++..+. +.+ +.++ +.+++++ +|..
T Consensus 95 ~~~~~~~--~~~lS~G~~qrv~la~al~~--~p~llllDEP~~~lD~~~~~~~~-~~l~~~~~--~~~ii~v----sH~~ 163 (213)
T PRK15177 95 EQCYTDR--VSEYSVTMKTHLAFAINLLL--PCRLYIADGKLYTGDNATQLRMQ-AALACQLQ--QKGLIVL----THNP 163 (213)
T ss_pred hHHhhch--HhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-HHHHHHhh--CCcEEEE----ECCH
Confidence 3211000 1111 12334899999999 999999999998 9999998888 544 4443 3455444 4777
Q ss_pred ccHHHHHHhh
Q 025642 145 TDVTKFISGC 154 (250)
Q Consensus 145 ~d~~~~~s~~ 154 (250)
.....+++.+
T Consensus 164 ~~~~~~~d~i 173 (213)
T PRK15177 164 RLIKEHCHAF 173 (213)
T ss_pred HHHHHhcCee
Confidence 6555555543
No 224
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.82 E-value=1.9e-20 Score=180.35 Aligned_cols=146 Identities=18% Similarity=0.227 Sum_probs=102.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc----------cCCCCC-Ccc--------cChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-PVA--------MDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~----------~~~~~y-~~~--------~~i~~~i~------ 58 (250)
+++|+||||||||||+++|+|+++ ++|+|++.|.+.. ...++| +++ .++.+.+.
T Consensus 314 ~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~ 392 (529)
T PRK15134 314 TLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH 392 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhc
Confidence 589999999999999999999985 8999999886542 123444 222 34444332
Q ss_pred ------------HHHHHHHhCCCC-CCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 59 ------------LEDVMEELGLGP-NGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 59 ------------~~~vm~~~~L~~-~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
+.++++.+++.+ .... ...+.. .+++++.||++++. +|+++|+||||+ ||+.++..++ +++
T Consensus 393 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l 468 (529)
T PRK15134 393 QPTLSAAQREQQVIAVMEEVGLDPETRHR-YPAEFSGGQRQRIAIARALIL--KPSLIILDEPTSSLDKTVQAQIL-ALL 468 (529)
T ss_pred cccCChHHHHHHHHHHHHHcCCCHHHHhc-CCccCCHHHHHHHHHHHHHhC--CCCEEEeeCCccccCHHHHHHHH-HHH
Confidence 345677777752 1111 011111 12344999999999 999999999999 9999999999 899
Q ss_pred HHHHhC-CCeEEEEEeccccccccHHHHHHhhHHhh
Q 025642 124 DHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASL 158 (250)
Q Consensus 124 ~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~ 158 (250)
++++++ |.+|+++. |.......+++.++...
T Consensus 469 ~~~~~~~~~tvi~vs----Hd~~~~~~~~d~i~~l~ 500 (529)
T PRK15134 469 KSLQQKHQLAYLFIS----HDLHVVRALCHQVIVLR 500 (529)
T ss_pred HHHHHhhCCEEEEEe----CCHHHHHHhcCeEEEEE
Confidence 988764 78887664 77766666666554443
No 225
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.2e-20 Score=161.61 Aligned_cols=145 Identities=13% Similarity=0.221 Sum_probs=97.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++ |++|+|.+.|.++. ...+.| +++ .++++++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~ 111 (251)
T PRK14251 32 LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKI 111 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHH
Confidence 579999999999999999999987 47999999987642 122333 221 24554443
Q ss_pred ------------HHHHHHHhCCCCC--CCchhhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~--g~~~~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++.+++... .........+ .+++++.||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~-~ 188 (251)
T PRK14251 112 AGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAV--RPKVVLLDEPTSALDPISSSEIE-E 188 (251)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCccCCHHHHHHHH-H
Confidence 2334555666311 0000001111 12334899999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+++++++ +.+++++ +|...+..++++.++.
T Consensus 189 ~l~~~~~-~~tiiii----sH~~~~~~~~~d~i~~ 218 (251)
T PRK14251 189 TLMELKH-QYTFIMV----THNLQQAGRISDQTAF 218 (251)
T ss_pred HHHHHHc-CCeEEEE----ECCHHHHHhhcCEEEE
Confidence 8888854 5677655 4666665666555443
No 226
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1e-19 Score=159.94 Aligned_cols=144 Identities=19% Similarity=0.282 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCcc---------CCCCC-Cc------ccChhhhhh----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV------AMDIRELIS---- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~~---------~~~~y-~~------~~~i~~~i~---- 58 (250)
+++|+||||||||||+++|+|+++| ++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 111 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLK 111 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHH
Confidence 5899999999999999999999974 69999998876421 12333 22 234554432
Q ss_pred -------------HHHHHHHhCCCCC--CCchhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 59 -------------LEDVMEELGLGPN--GGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 59 -------------~~~vm~~~~L~~~--g~~~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
++++++.+++.+. .........+. +++++.||++++. +|+++|+|||++ +|+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 188 (258)
T PRK14241 112 LNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV--EPDVLLMDEPCSALDPISTLAIE- 188 (258)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 2345556666321 00000001111 2334999999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHHHHHHhhH
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
++++++++ +.+++++ +|...+..++++.++
T Consensus 189 ~~l~~~~~-~~tviiv----sH~~~~~~~~~d~i~ 218 (258)
T PRK14241 189 DLINELKQ-DYTIVIV----THNMQQAARVSDQTA 218 (258)
T ss_pred HHHHHHhc-CCEEEEE----ecCHHHHHHhCCEEE
Confidence 88888854 5676655 466665556655443
No 227
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.82 E-value=3.2e-20 Score=178.68 Aligned_cols=147 Identities=14% Similarity=0.208 Sum_probs=100.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCcc-----------CCCCC-Ccc--------cChhhhh-
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFDY-PVA--------MDIRELI- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~~-----------~~~~y-~~~--------~~i~~~i- 57 (250)
+++|+||||||||||+++|+|+++| ++|+|.+.|.++.. ..++| +|+ .++.+.+
T Consensus 37 ~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~ 116 (529)
T PRK15134 37 TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLY 116 (529)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHH
Confidence 5799999999999999999999986 79999998876421 23444 222 1222211
Q ss_pred ----------------hHHHHHHHhCCCCCCCc-hhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHH
Q 025642 58 ----------------SLEDVMEELGLGPNGGL-IYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (250)
Q Consensus 58 ----------------~~~~vm~~~~L~~~g~~-~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~ 117 (250)
.++++++.+|+...... ......+. ++++++||++|+. +|+++|+||||+ ||+.++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~--~p~llllDEPt~~LD~~~~~~ 194 (529)
T PRK15134 117 EVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT--RPELLIADEPTTALDVSVQAQ 194 (529)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCccCHHHHHH
Confidence 14567777888541100 00011121 2344999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhC-CCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 118 VLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 118 i~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++ +++++++++ |.++++|. |.......+++.++..
T Consensus 195 l~-~~l~~l~~~~g~tvi~vt----Hd~~~~~~~~dri~~l 230 (529)
T PRK15134 195 IL-QLLRELQQELNMGLLFIT----HNLSIVRKLADRVAVM 230 (529)
T ss_pred HH-HHHHHHHHhcCCeEEEEc----CcHHHHHHhcCEEEEE
Confidence 99 899998764 78876663 5555444555444433
No 228
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5e-20 Score=160.88 Aligned_cols=145 Identities=19% Similarity=0.226 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC---CCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS--------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~---~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~--------- 58 (250)
.++|+||||||||||+++|+|+++ |++|+|.++|.+... ..+.| +++ .++++++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~ 109 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMI 109 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcc
Confidence 589999999999999999999974 689999999876421 22344 221 24444432
Q ss_pred ---------HHHHHHHhCCCCCC-Cch-hhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNG-GLI-YCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g-~~~-~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
+.++++.+++.+.- ... .....+ .+.++++||++++. +|+++|+|||++ +|+.++..+. ++++
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~ 186 (246)
T PRK14269 110 KNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI--KPKLLLLDEPTSALDPISSGVIE-ELLK 186 (246)
T ss_pred cChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHH
Confidence 34566777775310 000 000111 12344999999999 999999999999 9999999988 8888
Q ss_pred HHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 125 ~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++.+ +.+++++ +|...+...+++.++.
T Consensus 187 ~~~~-~~tiii~----tH~~~~~~~~~d~i~~ 213 (246)
T PRK14269 187 ELSH-NLSMIMV----THNMQQGKRVADYTAF 213 (246)
T ss_pred HHhC-CCEEEEE----ecCHHHHHhhCcEEEE
Confidence 8854 7777655 3666655556554433
No 229
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5e-20 Score=161.03 Aligned_cols=143 Identities=16% Similarity=0.250 Sum_probs=96.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++| ++|+|.++|.++. ...+.| +++ .++++++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~ 110 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRI 110 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHH
Confidence 5899999999999999999999874 8999999986642 122333 221 34444433
Q ss_pred ------------HHHHHHHhCCCCCCCchhhhhhhh------hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025642 59 ------------LEDVMEELGLGPNGGLIYCMEHLE------DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g~~~~~~~~~~------~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~ 119 (250)
+.++++.+++.+.-. ...+... +.+++.||++++. +|+++|+|||++ +|+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~LS~Gq~qr~~la~al~~--~p~llllDEP~~~LD~~~~~~l~ 186 (250)
T PRK14262 111 HGVKSKHKLDRIVEESLKKAALWDEVK--SELNKPGTRLSGGQQQRLCIARALAV--EPEVILLDEPTSALDPIATQRIE 186 (250)
T ss_pred cCCCcHHHHHHHHHHHHHHcCCCchhH--HHHhCChhhcCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHH
Confidence 223345556542100 0011111 2234999999999 999999999999 9999999988
Q ss_pred HHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 120 ~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++++++ +.+++++ +|...+...+++.++.
T Consensus 187 -~~l~~~~~-~~tili~----sH~~~~~~~~~d~i~~ 217 (250)
T PRK14262 187 -KLLEELSE-NYTIVIV----THNIGQAIRIADYIAF 217 (250)
T ss_pred -HHHHHHhc-CcEEEEE----eCCHHHHHHhCCEEEE
Confidence 88888865 6677655 3666555555554443
No 230
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.82 E-value=5e-20 Score=158.79 Aligned_cols=144 Identities=17% Similarity=0.243 Sum_probs=101.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccC--------CCCC---------CcccChhhh-----------
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------NFDY---------PVAMDIREL----------- 56 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~--------~~~y---------~~~~~i~~~----------- 56 (250)
.+|+||||||||||+++++|...|++|.+.+.|...... .+++ +....++|.
T Consensus 60 W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~ 139 (257)
T COG1119 60 WAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGI 139 (257)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccc
Confidence 369999999999999999999999999999988765321 1222 111112222
Q ss_pred ----------hhHHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025642 57 ----------ISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (250)
Q Consensus 57 ----------i~~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~ 125 (250)
-.+..+++.+|+....+..++--.-.++.++.|||||+. +|++||+|||++ +|+..+..+. +.+.+
T Consensus 140 y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~--~P~LLiLDEP~~GLDl~~re~ll-~~l~~ 216 (257)
T COG1119 140 YQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVK--DPELLILDEPAQGLDLIAREQLL-NRLEE 216 (257)
T ss_pred cccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH-HHHHH
Confidence 226678888998876544443222223333999999999 999999999999 9999999988 77777
Q ss_pred HHhC--CCeEEEEEeccccccccHHHHHHhhH
Q 025642 126 LKSR--NFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 126 l~~~--~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
+... +.++++|. |+..|....++.++
T Consensus 217 ~~~~~~~~~ll~Vt----Hh~eEi~~~~th~l 244 (257)
T COG1119 217 LAASPGAPALLFVT----HHAEEIPPCFTHRL 244 (257)
T ss_pred HhcCCCCceEEEEE----cchhhcccccceEE
Confidence 7643 56676663 77666555444433
No 231
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.3e-20 Score=161.15 Aligned_cols=146 Identities=16% Similarity=0.255 Sum_probs=98.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC--C---CCceEEEeecCCcc---------CCCCC-Cc------ccChhhhhh----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-PV------AMDIRELIS---- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~--~---~~G~i~i~~~dp~~---------~~~~y-~~------~~~i~~~i~---- 58 (250)
+++|+||||||||||+++|+|+++ | ++|+|.+.|.++.. ..+.| ++ ..++++++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 111 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYK 111 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHH
Confidence 589999999999999999999986 3 68999999876521 12333 22 234444332
Q ss_pred -------------HHHHHHHhCCCCCC-Cch-hhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 59 -------------LEDVMEELGLGPNG-GLI-YCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 59 -------------~~~vm~~~~L~~~g-~~~-~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
+.++++.+++.... ... .....+ .+.+++.||++++. +|+++|+|||++ +|+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~- 188 (252)
T PRK14256 112 LNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAV--KPEVILMDEPASALDPISTLKIE- 188 (252)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-
Confidence 33455566664210 000 000111 12344999999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++++++++ +.+++++ +|...+...+++.++..
T Consensus 189 ~~l~~~~~-~~tiiiv----sH~~~~~~~~~d~i~~l 220 (252)
T PRK14256 189 ELIEELKE-KYTIIIV----THNMQQAARVSDYTAFF 220 (252)
T ss_pred HHHHHHHh-CCcEEEE----ECCHHHHHhhCCEEEEE
Confidence 88888865 5676555 47666666666655443
No 232
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.82 E-value=2.6e-20 Score=199.00 Aligned_cols=151 Identities=14% Similarity=0.112 Sum_probs=113.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc------cCCCCC-Cc------ccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------AENFDY-PV------AMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~------~~~~~y-~~------~~~i~~~i~------------ 58 (250)
+++|+|||||||||++|+|+|+++|++|+|.+.|.++. .+.++| +| .++++|.+.
T Consensus 1967 i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~ 2046 (2272)
T TIGR01257 1967 CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEE 2046 (2272)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHH
Confidence 68999999999999999999999999999999998763 233555 32 356666553
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~ 132 (250)
++++++.+++.+..... ..++.. +++++.+|+|++. +|+++++|||++ +|+.+++.++ +++++++++|.+
T Consensus 2047 ~~~~v~~lLe~lgL~~~~dk~-~~~LSGGqKqRLslA~ALi~--~P~VLLLDEPTsGLDp~sr~~l~-~lL~~l~~~g~T 2122 (2272)
T TIGR01257 2047 IEKVANWSIQSLGLSLYADRL-AGTYSGGNKRKLSTAIALIG--CPPLVLLDEPTTGMDPQARRMLW-NTIVSIIREGRA 2122 (2272)
T ss_pred HHHHHHHHHHHcCCHHHhcCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE
Confidence 33567778876532111 112222 2334899999999 999999999999 9999999999 899998777888
Q ss_pred EEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
|+++ +|.+.+...+++.++....+.+
T Consensus 2123 IILt----TH~mee~e~lcDrV~IL~~G~i 2148 (2272)
T TIGR01257 2123 VVLT----SHSMEECEALCTRLAIMVKGAF 2148 (2272)
T ss_pred EEEE----eCCHHHHHHhCCEEEEEECCEE
Confidence 8655 5888888888887766555433
No 233
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.5e-20 Score=182.81 Aligned_cols=153 Identities=14% Similarity=0.177 Sum_probs=108.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC---------------------ccCCCCC-C--------cccCh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---------------------AAENFDY-P--------VAMDI 53 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp---------------------~~~~~~y-~--------~~~~i 53 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+. ....++| + +..++
T Consensus 44 ~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv 123 (623)
T PRK10261 44 TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTV 123 (623)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCH
Confidence 5899999999999999999999999999999876411 0112343 2 22455
Q ss_pred hhhhh-----------------HHHHHHHhCCCCCCC--chhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCH
Q 025642 54 RELIS-----------------LEDVMEELGLGPNGG--LIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IEL 112 (250)
Q Consensus 54 ~~~i~-----------------~~~vm~~~~L~~~g~--~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~ 112 (250)
.+.+. +.++++.+|+.+... ..+..+... +++++.||++|+. +|++||+||||+ ||+
T Consensus 124 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~--~P~lLllDEPt~~LD~ 201 (623)
T PRK10261 124 GEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC--RPAVLIADEPTTALDV 201 (623)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCccCH
Confidence 55442 345677888853110 111112221 3345999999999 999999999999 999
Q ss_pred HhHHHHHHHHHHHHHhC-CCeEEEEEeccccccccHHHHHHhhHHhhhhHhH
Q 025642 113 FTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (250)
Q Consensus 113 ~~~~~i~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~ 163 (250)
.++..+. +++++++++ |.+|++| +|.+.....+++.++....+.+.
T Consensus 202 ~~~~~l~-~ll~~l~~~~g~tvi~i----tHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 202 TIQAQIL-QLIKVLQKEMSMGVIFI----THDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred HHHHHHH-HHHHHHHHhcCCEEEEE----cCCHHHHHHhCCEEEEeeCCeec
Confidence 9999999 999999754 8888766 47777667777777665555443
No 234
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.4e-20 Score=163.28 Aligned_cols=145 Identities=19% Similarity=0.267 Sum_probs=98.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCcc---------CCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~~---------~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++| ++|+|.+.|.+... ..++| +++ .++.+++.
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~ 126 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRI 126 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHh
Confidence 5899999999999999999999974 89999999866421 22344 221 24444332
Q ss_pred -------------HHHHHHHhCCCCC-CCch-hhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 59 -------------LEDVMEELGLGPN-GGLI-YCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 59 -------------~~~vm~~~~L~~~-g~~~-~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
+.++++.+++.+. .... .....+ .+++++.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 203 (267)
T PRK14235 127 HGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAV--SPEVILMDEPCSALDPIATAKVE- 203 (267)
T ss_pred cccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-
Confidence 2345666676421 0000 000111 12344999999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++++++ +.+++++ +|.......+++.++.
T Consensus 204 ~~L~~l~~-~~tiiiv----tH~~~~~~~~~d~v~~ 234 (267)
T PRK14235 204 ELIDELRQ-NYTIVIV----THSMQQAARVSQRTAF 234 (267)
T ss_pred HHHHHHhc-CCeEEEE----EcCHHHHHhhCCEEEE
Confidence 88888865 6677655 3666555555554443
No 235
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.82 E-value=8.2e-20 Score=156.55 Aligned_cols=132 Identities=16% Similarity=0.257 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-Cc-----ccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-----AMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-~~-----~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| ++ ..++++++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~ 108 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQ 108 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHhhcCcCCHH
Confidence 579999999999999999999999999999998865321 22334 22 224555443
Q ss_pred -HHHHHHHhCCCCCC-----Cc-----hhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH-HHH
Q 025642 59 -LEDVMEELGLGPNG-----GL-----IYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN-FVD 124 (250)
Q Consensus 59 -~~~vm~~~~L~~~g-----~~-----~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~-ll~ 124 (250)
..++++.+++.+.- +. .+..+.. .++++++||++++. +|+++|+|||++ +|+.++..+++. +++
T Consensus 109 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~~ll~ 186 (218)
T cd03290 109 RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ--NTNIVFLDDPFSALDIHLSDHLMQEGILK 186 (218)
T ss_pred HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 23444555543210 00 0000111 12344999999999 999999999999 999999998842 777
Q ss_pred HHHhCCCeEEEEE
Q 025642 125 HLKSRNFNVCAVY 137 (250)
Q Consensus 125 ~l~~~~~~vi~v~ 137 (250)
.+++.+.+++++.
T Consensus 187 ~~~~~~~tii~~s 199 (218)
T cd03290 187 FLQDDKRTLVLVT 199 (218)
T ss_pred HHhcCCCEEEEEe
Confidence 7766678876664
No 236
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.82 E-value=9.2e-20 Score=159.42 Aligned_cols=130 Identities=12% Similarity=0.151 Sum_probs=90.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC--CCCCCceEEEeecCCcc------C--CCCC-Ccc------cChhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA------E--NFDY-PVA------MDIRELI--------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~--l~~~~G~i~i~~~dp~~------~--~~~y-~~~------~~i~~~i--------- 57 (250)
+++|+||||||||||+++|+|+ ++|++|+|.+.|.+... . .+.| +++ .++.+.+
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~ 114 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRK 114 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhc
Confidence 5899999999999999999998 57999999998865421 1 1212 111 1222221
Q ss_pred --------------hHHHHHHHhCCCC-CCCchhhhh-hh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025642 58 --------------SLEDVMEELGLGP-NGGLIYCME-HL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (250)
Q Consensus 58 --------------~~~~vm~~~~L~~-~g~~~~~~~-~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~ 119 (250)
.+.++++.+++.+ ...... .+ .. .+.+++.||++++. +|+++|+|||++ +|+.++..+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~ 191 (252)
T CHL00131 115 FQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV-NEGFSGGEKKRNEILQMALL--DSELAILDETDSGLDIDALKIIA 191 (252)
T ss_pred ccccccccHHHHHHHHHHHHHHcCCchhhhcccc-ccCCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH
Confidence 1345677777753 111110 11 11 12344999999999 999999999999 9999999998
Q ss_pred HHHHHHHHhCCCeEEEEE
Q 025642 120 RNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 120 ~~ll~~l~~~~~~vi~v~ 137 (250)
++++++.+.|.+++++.
T Consensus 192 -~~l~~~~~~g~tii~~t 208 (252)
T CHL00131 192 -EGINKLMTSENSIILIT 208 (252)
T ss_pred -HHHHHHHhCCCEEEEEe
Confidence 88888876688876663
No 237
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.8e-20 Score=160.35 Aligned_cols=146 Identities=16% Similarity=0.236 Sum_probs=97.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCcc---------CCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~~---------~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+.+| ++|+|.++|.+... ..+.| +++ .++.+++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~ 111 (251)
T PRK14270 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRI 111 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHh
Confidence 5899999999999999999999875 78999999876521 22333 221 34444432
Q ss_pred ------------HHHHHHHhCCCCC-CC-chhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPN-GG-LIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~-g~-~~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++.+++.+. .. .......+. +++++.||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~ 188 (251)
T PRK14270 112 HGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV--KPDVILMDEPTSALDPISTLKIE-D 188 (251)
T ss_pred cCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-H
Confidence 2345566665320 00 000001111 2234899999999 999999999999 9999999998 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+++++++ +.+++++ +|...+...+++.++..
T Consensus 189 ~L~~~~~-~~tiiiv----sH~~~~~~~~~d~v~~l 219 (251)
T PRK14270 189 LMVELKK-EYTIVIV----THNMQQASRVSDYTAFF 219 (251)
T ss_pred HHHHHHh-CCeEEEE----EcCHHHHHHhcCEEEEE
Confidence 8888865 5666555 36666555665554443
No 238
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.82 E-value=4.9e-20 Score=177.05 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=91.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC--CCCCceEEEee-----------------------cC-------C----------c
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVN-----------------------LD-------P----------A 41 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~i~i~~-----------------------~d-------p----------~ 41 (250)
+++|+||||||||||+++|+|++ +|++|+|.+.+ .+ . .
T Consensus 28 ~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 107 (520)
T TIGR03269 28 VLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRI 107 (520)
T ss_pred EEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHHh
Confidence 58999999999999999999997 79999999862 11 0 0
Q ss_pred cCCCCC-Cc-------ccChhhhhh----------------HHHHHHHhCCCCCCCchhhhhhhh--hhHHHHHHHHHhc
Q 025642 42 AENFDY-PV-------AMDIRELIS----------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDN 95 (250)
Q Consensus 42 ~~~~~y-~~-------~~~i~~~i~----------------~~~vm~~~~L~~~g~~~~~~~~~~--~~ls~~la~aL~~ 95 (250)
...++| ++ ..++++.+. +.++++.+|+....... ...+. ++++++||++|+.
T Consensus 108 ~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrv~iA~al~~ 185 (520)
T TIGR03269 108 RKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAK 185 (520)
T ss_pred hhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC--cccCCHHHHHHHHHHHHHhc
Confidence 112333 11 234444432 44567788886432110 11222 2344999999999
Q ss_pred CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEE
Q 025642 96 YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVY 137 (250)
Q Consensus 96 ~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~vi~v~ 137 (250)
+|+++|+||||+ ||+.++..++ ++++++.+ .|.+|++|.
T Consensus 186 --~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 186 --EPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASGISMVLTS 226 (520)
T ss_pred --CCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEe
Confidence 999999999999 9999999999 88888864 488876663
No 239
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.1e-19 Score=160.97 Aligned_cols=144 Identities=18% Similarity=0.237 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++ |++|+|.+.|.+.. ...+.| +++ .++++++.
T Consensus 41 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~ 120 (269)
T PRK14259 41 VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARI 120 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhh
Confidence 589999999999999999999987 58999999887542 123444 222 14444432
Q ss_pred ----------HHHHHHHhCCCCCC-C-chhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 59 ----------LEDVMEELGLGPNG-G-LIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 59 ----------~~~vm~~~~L~~~g-~-~~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
+.++++.+++...- . .......+. +++++.||++++. +|+++|+|||++ ||+.++..+. +++
T Consensus 121 ~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l 197 (269)
T PRK14259 121 NGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI--EPEVILMDEPCSALDPISTLKIE-ETM 197 (269)
T ss_pred cCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHH
Confidence 22345555553210 0 000001111 2334999999999 999999999999 9999999988 888
Q ss_pred HHHHhCCCeEEEEEeccccccccHHHHHHhhH
Q 025642 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 124 ~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
+++++ +.+++++ +|.......+++.++
T Consensus 198 ~~~~~-~~tiiiv----tH~~~~~~~~~d~i~ 224 (269)
T PRK14259 198 HELKK-NFTIVIV----THNMQQAVRVSDMTA 224 (269)
T ss_pred HHHhc-CCEEEEE----eCCHHHHHHhcCEEE
Confidence 88854 6677655 466666666655443
No 240
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.82 E-value=5.8e-20 Score=160.19 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=88.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC--CCCCceEEEeecCCcc--------CCCCC-Cccc------Chhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-PVAM------DIRELI--------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~i~i~~~dp~~--------~~~~y-~~~~------~i~~~i--------- 57 (250)
+++|+||||||||||+++|+|+. +|++|+|.++|.+... ..+.| +++. +...+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 108 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRS 108 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhc
Confidence 58999999999999999999995 6999999999876421 12333 2211 100000
Q ss_pred --------------hHHHHHHHhCCCCC-CCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 58 --------------SLEDVMEELGLGPN-GGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 58 --------------~~~~vm~~~~L~~~-g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
.++++++.+++.+. .......+.. .+++++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l~- 185 (248)
T PRK09580 109 YRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKIVA- 185 (248)
T ss_pred ccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 02345555666321 0000000111 22344999999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEE
Q 025642 121 NFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~ 137 (250)
++++++++.+.+++++.
T Consensus 186 ~~l~~l~~~~~tiii~s 202 (248)
T PRK09580 186 DGVNSLRDGKRSFIIVT 202 (248)
T ss_pred HHHHHHHhCCCEEEEEe
Confidence 88888877677876663
No 241
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.2e-20 Score=161.04 Aligned_cols=145 Identities=17% Similarity=0.242 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC---CCC--CCceEEEeecCCcc---------CCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH---CET--VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~---l~~--~~G~i~i~~~dp~~---------~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+ .+| ++|+|.++|.+... ..++| +++ .++.+++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~ 110 (250)
T PRK14245 31 VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRV 110 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHHHHH
Confidence 5899999999999999999997 454 58999999876421 12444 221 24443332
Q ss_pred ------------HHHHHHHhCCCCCC-Cch-hhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNG-GLI-YCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g-~~~-~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
++++++.+++.+.- ... .....+. +++++.||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 187 (250)
T PRK14245 111 NGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV--SPSVLLMDEPASALDPISTAKVE-E 187 (250)
T ss_pred cCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-H
Confidence 34556667764310 000 0011111 2334999999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++++ ++.+++++ +|...+...+++.++.
T Consensus 188 ~l~~~~-~~~tiiiv----tH~~~~~~~~~d~v~~ 217 (250)
T PRK14245 188 LIHELK-KDYTIVIV----THNMQQAARVSDKTAF 217 (250)
T ss_pred HHHHHh-cCCeEEEE----eCCHHHHHhhCCEEEE
Confidence 888885 46777655 3666655566555443
No 242
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.6e-20 Score=162.26 Aligned_cols=146 Identities=17% Similarity=0.246 Sum_probs=97.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC--C---CCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~--~---~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|.++ | ++|+|.+.|.++. ...+.| +++ .++++++.
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~ 119 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRI 119 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHh
Confidence 579999999999999999999987 3 5899999987642 122444 221 14444432
Q ss_pred ------------HHHHHHHhCCCCCC-C-chhhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNG-G-LIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g-~-~~~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
++++++.+++.+.- . .......+ .+++++.||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 120 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 196 (259)
T PRK14274 120 HGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALAT--NPDVLLMDEPTSALDPVSTRKIE-E 196 (259)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence 22345556664210 0 00000111 12334999999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+++++++ +.+++++ +|...+...+++.++..
T Consensus 197 ~l~~~~~-~~tiiiv----tH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 197 LILKLKE-KYTIVIV----THNMQQAARVSDQTAFF 227 (259)
T ss_pred HHHHHhc-CCEEEEE----EcCHHHHHHhCCEEEEE
Confidence 8888865 6677655 36666556666554433
No 243
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=4.1e-20 Score=160.00 Aligned_cols=130 Identities=15% Similarity=0.210 Sum_probs=86.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~ 60 (250)
+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..+.| ++ ..++++++. +.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~ 108 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVI 108 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHH
Confidence 579999999999999999999999999999998865421 12333 11 124444432 11
Q ss_pred HHHHHhCCCCC------C--Cch--hhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 61 DVMEELGLGPN------G--GLI--YCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 61 ~vm~~~~L~~~------g--~~~--~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++..++... + ... ...... .+++++.||++|+. +|+++|+|||++ +|+.++..+. ++++++++
T Consensus 109 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~ 185 (236)
T cd03253 109 EAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK--NPPILLLDEATSALDTHTEREIQ-AALRDVSK 185 (236)
T ss_pred HHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhcC
Confidence 11222222110 0 000 000111 12334999999999 999999999999 9999999988 88888866
Q ss_pred CCCeEEEEE
Q 025642 129 RNFNVCAVY 137 (250)
Q Consensus 129 ~~~~vi~v~ 137 (250)
|.+++++.
T Consensus 186 -~~tiii~s 193 (236)
T cd03253 186 -GRTTIVIA 193 (236)
T ss_pred -CCEEEEEc
Confidence 77876653
No 244
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.8e-20 Score=173.82 Aligned_cols=146 Identities=12% Similarity=0.150 Sum_probs=103.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Cc---------ccChhhh-----h---
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV---------AMDIREL-----I--- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~---------~~~i~~~-----i--- 57 (250)
+++|+||||||||||+++|+|+.+|++|+|.+.|.+... ..++| ++ +.++.+. +
T Consensus 276 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (491)
T PRK10982 276 ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNY 355 (491)
T ss_pred EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhh
Confidence 589999999999999999999999999999998866421 12333 11 1222111 0
Q ss_pred --------------hHHHHHHHhCCCC-CCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 58 --------------SLEDVMEELGLGP-NGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 58 --------------~~~~vm~~~~L~~-~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
.+.++++.++++. .... ..-+... +++++.||++++. +|+++|+||||+ +|+.++..++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSgGq~qrv~la~al~~--~p~illLDEPt~gLD~~~~~~~~- 431 (491)
T PRK10982 356 KNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-QIGSLSGGNQQKVIIGRWLLT--QPEILMLDEPTRGIDVGAKFEIY- 431 (491)
T ss_pred cccccccCcHHHHHHHHHHHHhcCccCCCccc-ccccCCcHHHHHHHHHHHHhc--CCCEEEEcCCCcccChhHHHHHH-
Confidence 1345666777742 2111 1111111 2344999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+++++++++|.+|+++ +|...+...+++.++..
T Consensus 432 ~~l~~l~~~~~tvi~v----sHd~~~~~~~~d~v~~l 464 (491)
T PRK10982 432 QLIAELAKKDKGIIII----SSEMPELLGITDRILVM 464 (491)
T ss_pred HHHHHHHHCCCEEEEE----CCChHHHHhhCCEEEEE
Confidence 8999988778888766 47777777776655443
No 245
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.82 E-value=2.4e-19 Score=147.30 Aligned_cols=134 Identities=19% Similarity=0.207 Sum_probs=100.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-------CcccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-------~~~~~i~~~i~------- 58 (250)
.++|+||+|||||||+-.++|+-.|++|+|++.|++... .++++ -|+++--|++.
T Consensus 38 ~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g 117 (228)
T COG4181 38 TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG 117 (228)
T ss_pred eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC
Confidence 478999999999999999999999999999999877521 23332 23334333332
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
..+.++.+||+..-..-..--.-.++++++|||+++. .|++++.||||- +|-.+-..+. +++-.+++
T Consensus 118 e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~--~P~vLfADEPTGNLD~~Tg~~ia-DLlF~lnr 194 (228)
T COG4181 118 ESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG--RPDVLFADEPTGNLDRATGDKIA-DLLFALNR 194 (228)
T ss_pred CccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC--CCCEEeccCCCCCcchhHHHHHH-HHHHHHhh
Confidence 6788999999876311100011123556999999999 999999999998 9999999999 88888875
Q ss_pred -CCCeEEEEEeccc
Q 025642 129 -RNFNVCAVYLLDS 141 (250)
Q Consensus 129 -~~~~vi~v~l~d~ 141 (250)
.|.|++.|. +|.
T Consensus 195 e~G~TlVlVT-HD~ 207 (228)
T COG4181 195 ERGTTLVLVT-HDP 207 (228)
T ss_pred hcCceEEEEe-CCH
Confidence 488888775 443
No 246
>PRK13409 putative ATPase RIL; Provisional
Probab=99.81 E-value=1e-19 Score=177.32 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=101.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--cCCCCCCcccChhhhhh-----------HHHHHHHhCCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS-----------LEDVMEELGLGP 70 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--~~~~~y~~~~~i~~~i~-----------~~~vm~~~~L~~ 70 (250)
+++|+||||||||||+++|+|+++|++|+|.+. ...+ .+.....+..++++++. ..++++.+++.+
T Consensus 367 iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~ 445 (590)
T PRK13409 367 VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLER 445 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHH
Confidence 589999999999999999999999999999874 1110 11111123345555443 356778888864
Q ss_pred CCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEEEeccccccccH
Q 025642 71 NGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDV 147 (250)
Q Consensus 71 ~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~ 147 (250)
.... ...+... ++++++||++|+. +|+++|+||||+ ||+.++..+. +++++++++ |.++++|. |.....
T Consensus 446 ~~~~-~~~~LSGGe~QRvaiAraL~~--~p~llLLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviivs----HD~~~~ 517 (590)
T PRK13409 446 LLDK-NVKDLSGGELQRVAIAACLSR--DADLYLLDEPSAHLDVEQRLAVA-KAIRRIAEEREATALVVD----HDIYMI 517 (590)
T ss_pred HHhC-CcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEe----CCHHHH
Confidence 2111 1111111 2344999999999 999999999999 9999999999 899998754 78887664 666655
Q ss_pred HHHHHhhHHh
Q 025642 148 TKFISGCMAS 157 (250)
Q Consensus 148 ~~~~s~~l~~ 157 (250)
..+++.++..
T Consensus 518 ~~~aDrvivl 527 (590)
T PRK13409 518 DYISDRLMVF 527 (590)
T ss_pred HHhCCEEEEE
Confidence 6666654443
No 247
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.4e-19 Score=159.77 Aligned_cols=144 Identities=17% Similarity=0.229 Sum_probs=100.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCcc---------CCCCC-Cc-----ccChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~~---------~~~~y-~~-----~~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++| ++|+|.++|.+... ..+.| ++ ..++.+++.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~ 115 (261)
T PRK14263 36 ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRL 115 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHHHHHHHhh
Confidence 6899999999999999999999986 79999999876421 22333 21 234554442
Q ss_pred ----------HHHHHHHhCCCCCCCchh--hhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 59 ----------LEDVMEELGLGPNGGLIY--CMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 59 ----------~~~vm~~~~L~~~g~~~~--~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
+.++++.+++.+...... ....+ .+.+++.||++++. +|+++|+|||++ +|+.++..+. +++
T Consensus 116 ~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPtsgLD~~~~~~l~-~~l 192 (261)
T PRK14263 116 NRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT--EPEVLLLDEPCSALDPIATRRVE-ELM 192 (261)
T ss_pred cCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-HHH
Confidence 345677777753211000 00111 12344899999999 999999999999 9999999998 888
Q ss_pred HHHHhCCCeEEEEEeccccccccHHHHHHhhH
Q 025642 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 124 ~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
+++++ +.+++++ +|...+..++++.++
T Consensus 193 ~~~~~-~~tii~i----sH~~~~i~~~~d~v~ 219 (261)
T PRK14263 193 VELKK-DYTIALV----THNMQQAIRVADTTA 219 (261)
T ss_pred HHHhc-CCeEEEE----eCCHHHHHHhCCEEE
Confidence 88854 6676555 476666666666544
No 248
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.81 E-value=1e-19 Score=151.47 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=83.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc------cCCCCC-CcccChhhhhhHHHHHHHhCCCCCCCchh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------AENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIY 76 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~------~~~~~y-~~~~~i~~~i~~~~vm~~~~L~~~g~~~~ 76 (250)
+++|+||||||||||+++|+|+.+|++|+|.++|.+.. ...+.| +++..+.. .++.+.+ +.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------~~----- 97 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL------GR----- 97 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh------cc-----
Confidence 57999999999999999999999999999999987542 122344 22221111 1222222 11
Q ss_pred hhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 77 CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 77 ~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
.+. ..+.+++.||++++. +|+++|+|||++ +|+.++..++ +++++++ ++.+++++.
T Consensus 98 ~LS-~G~~qrv~laral~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tii~~s 154 (178)
T cd03247 98 RFS-GGERQRLALARILLQ--DAPIVLLDEPTVGLDPITERQLL-SLIFEVL-KDKTLIWIT 154 (178)
T ss_pred cCC-HHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-CCCEEEEEe
Confidence 011 122345999999999 999999999999 9999999988 8888885 477776553
No 249
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.1e-20 Score=163.43 Aligned_cols=145 Identities=17% Similarity=0.253 Sum_probs=95.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+.+ |++|+|.+.|.+.. ...+.| +++ .++.+++.
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~ 128 (268)
T PRK14248 49 VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKY 128 (268)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHh
Confidence 589999999999999999999864 68999999887642 123444 221 14444432
Q ss_pred ------------HHHHHHHhCCCCC-CCch-hhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPN-GGLI-YCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~-g~~~-~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++.+++... .... .....+. +++++.||++++. +|+++|+||||+ +|+.++..+. +
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 205 (268)
T PRK14248 129 AGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM--KPAVLLLDEPASALDPISNAKIE-E 205 (268)
T ss_pred cCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC--CCCEEEEcCCCcccCHHHHHHHH-H
Confidence 2233445555310 0000 0001111 2334899999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+++++++ +.+++++ +|.......+++.++.
T Consensus 206 ~l~~~~~-~~tiii~----tH~~~~~~~~~d~v~~ 235 (268)
T PRK14248 206 LITELKE-EYSIIIV----THNMQQALRVSDRTAF 235 (268)
T ss_pred HHHHHhc-CCEEEEE----EeCHHHHHHhCCEEEE
Confidence 8888865 5676555 4666655556554443
No 250
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6.1e-20 Score=160.54 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=96.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC--CC---CCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC--ET---VRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l--~~---~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+. +| ++|+|.+.|.+.. ...+.| +++ .++++++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~ 112 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRL 112 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHH
Confidence 58999999999999999999985 46 4899999987642 122444 221 34555443
Q ss_pred ------------HHHHHHHhCCCCCC-Cch-hhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNG-GLI-YCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g-~~~-~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++.+++.+.- ... .....+. +++++.||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 189 (252)
T PRK14239 113 KGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT--SPKIILLDEPTSALDPISAGKIE-E 189 (252)
T ss_pred cCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-H
Confidence 12234455543210 000 0001111 2234899999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+++++.+ +.+++++ +|...+...+++.++..
T Consensus 190 ~l~~~~~-~~tii~~----sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 190 TLLGLKD-DYTMLLV----TRSMQQASRISDRTGFF 220 (252)
T ss_pred HHHHHhh-CCeEEEE----ECCHHHHHHhCCEEEEE
Confidence 8888865 5676655 46666556665544433
No 251
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9e-20 Score=161.31 Aligned_cols=144 Identities=20% Similarity=0.245 Sum_probs=97.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++ |++|+|.++|.+.. ...+.| +++ .++++++.
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~ 127 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALER 127 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHHh
Confidence 589999999999999999999986 57999999987642 123444 221 24444443
Q ss_pred ------------HHHHHHHhCCCCC----CCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 59 ------------LEDVMEELGLGPN----GGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~----g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
+.++++.+++.+. .... ..+.. .+.+++.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~-~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 203 (267)
T PRK14237 128 AGVKDKKVLDEIVETSLKQAALWDQVKDDLHKS-ALTLSGGQQQRLCIARAIAV--KPDILLMDEPASALDPISTMQLE- 203 (267)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCC-cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 2233556665321 0000 00111 12334899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++++++ +.+++++ +|...+...+++.++.
T Consensus 204 ~~l~~~~~-~~tiii~----tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 204 ETMFELKK-NYTIIIV----THNMQQAARASDYTAF 234 (267)
T ss_pred HHHHHHhc-CCEEEEE----ecCHHHHHHhcCEEEE
Confidence 88888854 6676655 3666655566554443
No 252
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9e-20 Score=159.60 Aligned_cols=145 Identities=20% Similarity=0.301 Sum_probs=97.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+.+ |++|+|.+.|.+.. ...+.| +++ .++.+++.
T Consensus 33 ~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~ 112 (251)
T PRK14244 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKL 112 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHHHHHHHHHHh
Confidence 579999999999999999999986 47999999886531 122334 221 13433322
Q ss_pred -------------HHHHHHHhCCCCCCC-ch--hhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 59 -------------LEDVMEELGLGPNGG-LI--YCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 59 -------------~~~vm~~~~L~~~g~-~~--~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
+.++++.+++.+.-+ .. ...+.. .+++++.||++++. +|+++|+|||++ +|+.++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 189 (251)
T PRK14244 113 HGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAV--KPTMLLMDEPCSALDPVATNVIE- 189 (251)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 234567777753100 00 000111 12334899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++++++ +.+++++ +|...+...+++.++.
T Consensus 190 ~~l~~~~~-~~tiiii----sH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 190 NLIQELKK-NFTIIVV----THSMKQAKKVSDRVAF 220 (251)
T ss_pred HHHHHHhc-CCeEEEE----eCCHHHHHhhcCEEEE
Confidence 88888854 7777655 3666655555554443
No 253
>PRK13409 putative ATPase RIL; Provisional
Probab=99.81 E-value=8.3e-20 Score=177.89 Aligned_cols=129 Identities=22% Similarity=0.239 Sum_probs=94.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEE-----------EeecCCcc---------CC----CCC---Ccc---cCh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA---------EN----FDY---PVA---MDI 53 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~-----------i~~~dp~~---------~~----~~y---~~~---~~i 53 (250)
+++|+||||||||||+++|+|+++|+.|+|. +.|.+... .. +.| .+. .++
T Consensus 101 v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv 180 (590)
T PRK13409 101 VTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKV 180 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchH
Confidence 6899999999999999999999999999997 77765311 11 122 111 145
Q ss_pred hhhhh-------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 54 RELIS-------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 54 ~~~i~-------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
++.+. ++++++.+++........ .+.. .+.++++||++++. +|+++||||||+ ||+.++..+. ++++
T Consensus 181 ~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~-~~LSgGe~qrv~ia~al~~--~p~lllLDEPts~LD~~~~~~l~-~~i~ 256 (590)
T PRK13409 181 RELLKKVDERGKLDEVVERLGLENILDRDI-SELSGGELQRVAIAAALLR--DADFYFFDEPTSYLDIRQRLNVA-RLIR 256 (590)
T ss_pred HHHHHhhhHHHHHHHHHHHcCCchhhcCCh-hhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHH
Confidence 55442 567888888865321110 1111 12344999999999 999999999999 9999999998 8999
Q ss_pred HHHhCCCeEEEEE
Q 025642 125 HLKSRNFNVCAVY 137 (250)
Q Consensus 125 ~l~~~~~~vi~v~ 137 (250)
++++ |.+++++.
T Consensus 257 ~l~~-g~tvIivs 268 (590)
T PRK13409 257 ELAE-GKYVLVVE 268 (590)
T ss_pred HHHC-CCEEEEEe
Confidence 9977 88877663
No 254
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6.7e-20 Score=163.81 Aligned_cols=145 Identities=16% Similarity=0.230 Sum_probs=95.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+.+ |++|+|.++|.++. ...+.| +++ .++.+++.
T Consensus 67 ~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~ 146 (286)
T PRK14275 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRL 146 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHh
Confidence 579999999999999999999864 49999999886542 123444 222 14444443
Q ss_pred ------------HHHHHHHhCCCCC-CCc-hhhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPN-GGL-IYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~-g~~-~~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++.+++... ... ......+ .+++++.||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 147 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~gLD~~~~~~l~-~ 223 (286)
T PRK14275 147 HGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV--EPEILLLDEPTSALDPKATAKIE-D 223 (286)
T ss_pred cCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-H
Confidence 2234455555310 000 0000111 12344999999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+++++++ +.+++++ +|.......+++.++.
T Consensus 224 ~L~~~~~-~~tvIiv----sH~~~~~~~~~d~i~~ 253 (286)
T PRK14275 224 LIQELRG-SYTIMIV----THNMQQASRVSDYTMF 253 (286)
T ss_pred HHHHHhc-CCeEEEE----eCCHHHHHHhCCEEEE
Confidence 8888865 5666555 4666655566554443
No 255
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.81 E-value=1.3e-19 Score=154.17 Aligned_cols=125 Identities=21% Similarity=0.226 Sum_probs=88.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-------cCCCCC-Ccc-----cChhhhhh------HHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PVA-----MDIRELIS------LEDVME 64 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-------~~~~~y-~~~-----~~i~~~i~------~~~vm~ 64 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| +++ .++++++. .+++.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~ 115 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYG 115 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCHHHHHH
Confidence 58999999999999999999999999999999887542 123444 221 24544442 122333
Q ss_pred HhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 65 ELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 65 ~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
.+++..+.. ... .+.+++.||++++. +|+++|+|||++ +|+.++..+. ++++++. ++.+++++.
T Consensus 116 ~l~~~~~~~-----~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tiii~t 181 (207)
T cd03369 116 ALRVSEGGL-----NLSQGQRQLLCLARALLK--RPRVLVLDEATASIDYATDALIQ-KTIREEF-TNSTILTIA 181 (207)
T ss_pred HhhccCCCC-----cCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-CCCEEEEEe
Confidence 333322210 111 13344999999999 999999999999 9999999888 8888874 477776553
No 256
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=7.1e-20 Score=162.38 Aligned_cols=145 Identities=18% Similarity=0.244 Sum_probs=94.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhhH----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELISL---- 59 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~~---- 59 (250)
+++|+|+||||||||+++|+|+++ |++|+|.+.|.+.. ...+.| +++ .++.+.+..
T Consensus 52 ~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~ 131 (271)
T PRK14238 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKI 131 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHHHHHHHHh
Confidence 589999999999999999999987 69999999886542 122444 222 244444431
Q ss_pred -------------HHHHHHhCCCCC-CCc-hhhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 60 -------------EDVMEELGLGPN-GGL-IYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 60 -------------~~vm~~~~L~~~-g~~-~~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
.++++.+++... ... ......+ .+++++.||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~ 208 (271)
T PRK14238 132 HGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI--EPDVILMDEPTSALDPISTLKVE-E 208 (271)
T ss_pred cCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-H
Confidence 122222322100 000 0000111 12334899999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+++++++ +.+++++ +|.......+++.++.
T Consensus 209 ~l~~~~~-~~tiiiv----sH~~~~i~~~~d~i~~ 238 (271)
T PRK14238 209 LVQELKK-DYSIIIV----THNMQQAARISDKTAF 238 (271)
T ss_pred HHHHHHc-CCEEEEE----EcCHHHHHHhCCEEEE
Confidence 8888865 6777655 4666655566554443
No 257
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9.8e-20 Score=159.18 Aligned_cols=145 Identities=17% Similarity=0.266 Sum_probs=95.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCcc---------CCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~~---------~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+.++ ++|+|.+.|.++.. ..+.| +++ .++.+++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~ 110 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRT 110 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHHHHHHHHh
Confidence 5799999999999999999998763 68999999876421 12334 221 24444443
Q ss_pred ------------HHHHHHHhCCCCCC-Cc-hhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNG-GL-IYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g-~~-~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++.+++.+.- .. ......+. +++++.||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~ 187 (250)
T PRK14240 111 HGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV--EPEVLLMDEPTSALDPISTLKIE-E 187 (250)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-H
Confidence 12233444442100 00 00001111 2334999999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+++++++ +.+++++ +|...+...+++.++.
T Consensus 188 ~l~~~~~-~~tiii~----sH~~~~~~~~~d~v~~ 217 (250)
T PRK14240 188 LIQELKK-DYTIVIV----THNMQQASRISDKTAF 217 (250)
T ss_pred HHHHHhc-CCeEEEE----EeCHHHHHhhCCEEEE
Confidence 8888854 6777655 3666555555554433
No 258
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.4e-19 Score=158.29 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=96.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-----CceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~-----~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++|+ +|+|.+.|.++. ...+.| +++ .++++++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~ 111 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRM 111 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHHHHHhhHHHh
Confidence 57999999999999999999999987 699999887642 122333 221 14444432
Q ss_pred ------------HHHHHHHhCCCCC-CCch-hhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPN-GGLI-YCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~-g~~~-~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
++++++.+++.+. .... .....+ .+.+++.||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 188 (251)
T PRK14249 112 LGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI--EPEVILMDEPCSALDPVSTMRIE-E 188 (251)
T ss_pred cCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-H
Confidence 1223334454311 0000 000111 12234999999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++++ ++.+++++ +|...+...+++.++.
T Consensus 189 ~l~~~~-~~~tiliv----sh~~~~~~~~~d~i~~ 218 (251)
T PRK14249 189 LMQELK-QNYTIAIV----THNMQQAARASDWTGF 218 (251)
T ss_pred HHHHHh-cCCEEEEE----eCCHHHHHhhCCEEEE
Confidence 888885 47777665 4776666666554443
No 259
>PLN03211 ABC transporter G-25; Provisional
Probab=99.81 E-value=1.9e-19 Score=177.42 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=108.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC--CceEEEeecCCcc---CCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~--~G~i~i~~~dp~~---~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|..+|. +|+|.++|.+... ..++| .+..+++|.+.
T Consensus 96 ~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~ 175 (659)
T PLN03211 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTK 175 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCH
Confidence 58999999999999999999999885 8999999976421 22444 22345666543
Q ss_pred ------HHHHHHHhCCCCCCC----chhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 59 ------LEDVMEELGLGPNGG----LIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 59 ------~~~vm~~~~L~~~g~----~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
++++++++|+.+... ........ .+++++.||++|+. +|+++++||||+ ||..++..++ ++++++
T Consensus 176 ~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~--~P~iLlLDEPtsgLD~~~~~~l~-~~L~~l 252 (659)
T PLN03211 176 QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI--NPSLLILDEPTSGLDATAAYRLV-LTLGSL 252 (659)
T ss_pred HHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh--CCCEEEEeCCCCCcCHHHHHHHH-HHHHHH
Confidence 445677788854210 00000111 22344999999999 999999999999 9999999999 899999
Q ss_pred HhCCCeEEEEEeccccccc-cHHHHHHhhHHhhhhHhH
Q 025642 127 KSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQ 163 (250)
Q Consensus 127 ~~~~~~vi~v~l~d~~~~~-d~~~~~s~~l~~~~~~~~ 163 (250)
+++|.+++++. |... +....++.+++...+.+.
T Consensus 253 ~~~g~TvI~~s----H~~~~~i~~~~D~iilL~~G~iv 286 (659)
T PLN03211 253 AQKGKTIVTSM----HQPSSRVYQMFDSVLVLSEGRCL 286 (659)
T ss_pred HhCCCEEEEEe----cCCCHHHHHhhceEEEecCCcEE
Confidence 87788886653 5555 345666666555444443
No 260
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.81 E-value=7.1e-20 Score=157.04 Aligned_cols=129 Identities=22% Similarity=0.211 Sum_probs=88.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-------cCCCCC-Ccc-----cChhhhhh---------HHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PVA-----MDIRELIS---------LED 61 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-------~~~~~y-~~~-----~~i~~~i~---------~~~ 61 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| +++ .++++.+. +.+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~ 111 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQ 111 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHH
Confidence 58999999999999999999999999999999886542 122333 211 24454432 334
Q ss_pred HHHHhCCCCCC-----Cch-----hhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 62 VMEELGLGPNG-----GLI-----YCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 62 vm~~~~L~~~g-----~~~-----~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
.++.+++.+.- +.. ...+.. .+.+++.||++++. +|+++|+|||++ +|+.++..+. ++++++.+
T Consensus 112 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~- 187 (221)
T cd03244 112 ALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQ-KTIREAFK- 187 (221)
T ss_pred HHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhcC-
Confidence 44555543210 000 000111 12334999999999 999999999999 9999999988 88888754
Q ss_pred CCeEEEE
Q 025642 130 NFNVCAV 136 (250)
Q Consensus 130 ~~~vi~v 136 (250)
+.+++++
T Consensus 188 ~~tii~~ 194 (221)
T cd03244 188 DCTVLTI 194 (221)
T ss_pred CCEEEEE
Confidence 5666554
No 261
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=1.3e-19 Score=156.25 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=111.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC--ccCCCCCCcccChhhhhh----------------HHHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS----------------LEDVMEE 65 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp--~~~~~~y~~~~~i~~~i~----------------~~~vm~~ 65 (250)
.+||+|+||||||||+|+|+|.++|++|+|.+.|.-. -....++.|+.+.++++. ++++.+.
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieF 134 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEF 134 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999988532 223456677778777765 5566666
Q ss_pred hCCCCCCCchhhhhhhhhhHH----HHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 025642 66 LGLGPNGGLIYCMEHLEDNLD----DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (250)
Q Consensus 66 ~~L~~~g~~~~~~~~~~~~ls----~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d 140 (250)
-+||+.. +.+.+++| ..||-+++...+|++||+||-.+ -|..-++... +.++++.+++.++++|.
T Consensus 135 aELG~fi------~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~-~rl~e~~~~~~tiv~VS--- 204 (249)
T COG1134 135 AELGDFI------DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL-ERLNELVEKNKTIVLVS--- 204 (249)
T ss_pred HHHHHHh------hCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH-HHHHHHHHcCCEEEEEE---
Confidence 6777662 44444443 45555555444999999999999 9999988888 77788866678887774
Q ss_pred ccccccHHHHHHhhHHhhhhHhH
Q 025642 141 SQFITDVTKFISGCMASLSAMVQ 163 (250)
Q Consensus 141 ~~~~~d~~~~~s~~l~~~~~~~~ 163 (250)
|...-...+|+++++.-.+.++
T Consensus 205 -Hd~~~I~~~Cd~~i~l~~G~i~ 226 (249)
T COG1134 205 -HDLGAIKQYCDRAIWLEHGQIR 226 (249)
T ss_pred -CCHHHHHHhcCeeEEEeCCEEE
Confidence 7777778888877765555443
No 262
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.80 E-value=4.2e-20 Score=182.27 Aligned_cols=124 Identities=22% Similarity=0.231 Sum_probs=89.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh-------HHHHH-
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS-------LEDVM- 63 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~-------~~~vm- 63 (250)
++|+|+||||||||+|.|+|+++|..|+|.++|.|... +.++| +|+ -+++|+++ .++++
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~ 581 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIE 581 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHH
Confidence 89999999999999999999999999999999988632 45555 332 35777776 22222
Q ss_pred -----------HHhC------CCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025642 64 -----------EELG------LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (250)
Q Consensus 64 -----------~~~~------L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~ 125 (250)
+.+- ++..|+. =.-.++++.+|||++.. +|++||+||||+ ||..+.+.+. +-+.+
T Consensus 582 A~~~ag~~~fI~~lP~gy~t~v~E~G~~----LSGGQrQrlalARaLl~--~P~ILlLDEaTSaLD~~sE~~I~-~~L~~ 654 (709)
T COG2274 582 AAQLAGAHEFIENLPMGYDTPVGEGGAN----LSGGQRQRLALARALLS--KPKILLLDEATSALDPETEAIIL-QNLLQ 654 (709)
T ss_pred HHHHhCcHHHHHhcccccccccccCCCC----CCHHHHHHHHHHHHhcc--CCCEEEEeCcccccCHhHHHHHH-HHHHH
Confidence 2211 1122211 11223566999999999 999999999999 9999999988 55566
Q ss_pred HHhCCCeEEEE
Q 025642 126 LKSRNFNVCAV 136 (250)
Q Consensus 126 l~~~~~~vi~v 136 (250)
+.+ |+|++++
T Consensus 655 ~~~-~~T~I~I 664 (709)
T COG2274 655 ILQ-GRTVIII 664 (709)
T ss_pred Hhc-CCeEEEE
Confidence 543 5666555
No 263
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=1.6e-19 Score=153.30 Aligned_cols=131 Identities=22% Similarity=0.238 Sum_probs=83.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeec-CCccCCCCCCcccChhhhhh---------HHHHHHHhCCC----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELIS---------LEDVMEELGLG---- 69 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~-dp~~~~~~y~~~~~i~~~i~---------~~~vm~~~~L~---- 69 (250)
+++|+||||||||||+++|+|+.+|++|+|.+.|. -...++..+. ..++++++. ..+..+.+++.
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLE 111 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHH
Confidence 58999999999999999999999999999998761 0000111111 123333332 12222222221
Q ss_pred --CCCC---c-hhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 70 --PNGG---L-IYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 70 --~~g~---~-~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
|.+- . ....+.. .+++++.||++++. +|+++|+|||++ +|+.+...+++.+++.+.+.+.+++++.
T Consensus 112 ~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~s 185 (204)
T cd03250 112 ILPDGDLTEIGEKGINLSGGQKQRISLARAVYS--DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVT 185 (204)
T ss_pred hccCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 1110 0 0000111 12344999999999 999999999999 9999999888446776655577877664
No 264
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.80 E-value=3e-19 Score=147.38 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=79.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCC-Ccc-----cChhhhhhHHHHHHHhCCCCCCCchhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVA-----MDIRELISLEDVMEELGLGPNGGLIYC 77 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y-~~~-----~~i~~~i~~~~vm~~~~L~~~g~~~~~ 77 (250)
+++|+||||||||||+++|+|+++|++|+|.+.+. ..+.| +++ .++++++... .+. .
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----~~i~~~~q~~~~~~~tv~~nl~~~--------~~~-----~ 91 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----EDLLFLPQRPYLPLGTLREQLIYP--------WDD-----V 91 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----ceEEEECCCCccccccHHHHhhcc--------CCC-----C
Confidence 57999999999999999999999999999998763 22333 222 2444443211 111 0
Q ss_pred hhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 78 MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 78 ~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+ ...+++++.+|++++. +|+++|+|||++ +|+.++..+. ++++++ +.+++++.
T Consensus 92 L-S~G~~~rv~laral~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~---~~tiiivs 145 (166)
T cd03223 92 L-SGGEQQRLAFARLLLH--KPKFVFLDEATSALDEESEDRLY-QLLKEL---GITVISVG 145 (166)
T ss_pred C-CHHHHHHHHHHHHHHc--CCCEEEEECCccccCHHHHHHHH-HHHHHh---CCEEEEEe
Confidence 1 1122344999999999 999999999999 9999998887 777665 46766553
No 265
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.3e-19 Score=159.07 Aligned_cols=146 Identities=14% Similarity=0.193 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCcc---------CCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~~---------~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|++++ ++|+|.+.|.+... ..+.| +++ .++++++.
T Consensus 53 ~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~ 132 (272)
T PRK14236 53 VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRL 132 (272)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHh
Confidence 6899999999999999999999874 89999999876421 22333 221 14444432
Q ss_pred ------------HHHHHHHhCCCCCC-Cc--hhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNG-GL--IYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g-~~--~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++.+++.+.- .. ....+.. .++++++||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 133 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~ 209 (272)
T PRK14236 133 QGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAI--EPEVLLLDEPTSALDPISTLKIE-E 209 (272)
T ss_pred cCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-H
Confidence 23344555654210 00 0000111 12344999999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+++++++ +.+++++ +|...+...+++.++..
T Consensus 210 ~L~~~~~-~~tiiiv----tH~~~~~~~~~d~i~~l 240 (272)
T PRK14236 210 LITELKS-KYTIVIV----THNMQQAARVSDYTAFM 240 (272)
T ss_pred HHHHHHh-CCeEEEE----eCCHHHHHhhCCEEEEE
Confidence 8888865 6676555 36665555555544433
No 266
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.2e-19 Score=158.66 Aligned_cols=142 Identities=14% Similarity=0.258 Sum_probs=96.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++ |++|+|.+.|.++. ...+.| +++ .++.+++.
T Consensus 67 ~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~ 146 (285)
T PRK14254 67 VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKI 146 (285)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHHH
Confidence 589999999999999999999987 68999999886542 112333 221 14554443
Q ss_pred ----------HHHHHHHhCCCCCC-Cc--hhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 59 ----------LEDVMEELGLGPNG-GL--IYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 59 ----------~~~vm~~~~L~~~g-~~--~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
+.++++.+++.+.- .. ....+.. .+++++.||++++. +|+++|+|||++ ||+.++..+. +++
T Consensus 147 ~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~--~p~lLLLDEPts~LD~~~~~~l~-~~L 223 (285)
T PRK14254 147 QGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP--DPEVILMDEPASALDPVATSKIE-DLI 223 (285)
T ss_pred cCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-HHH
Confidence 34456667764310 00 0000111 12344999999999 999999999999 9999999988 888
Q ss_pred HHHHhCCCeEEEEEeccccccccHHHHHHh
Q 025642 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (250)
Q Consensus 124 ~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~ 153 (250)
+++++ +.+++++ +|.......+++.
T Consensus 224 ~~~~~-~~tiii~----tH~~~~i~~~~dr 248 (285)
T PRK14254 224 EELAE-EYTVVIV----THNMQQAARISDK 248 (285)
T ss_pred HHHhc-CCEEEEE----eCCHHHHHhhcCE
Confidence 88865 3566554 4666655556554
No 267
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.80 E-value=1.4e-19 Score=193.57 Aligned_cols=148 Identities=14% Similarity=0.178 Sum_probs=109.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-C------cccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-P------VAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-~------~~~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... +.++| + +..++++.+.
T Consensus 958 i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~ 1037 (2272)
T TIGR01257 958 ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEE 1037 (2272)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHH
Confidence 589999999999999999999999999999999987531 23444 2 2345666553
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~ 132 (250)
++++++++|+....... ..+... +++++.||+|++. +|+++|+||||+ +|+.+++.++ +++++++ +|.+
T Consensus 1038 ~~~~v~~lL~~vgL~~~~~~~-~~~LSGGqKQRLsLArALi~--~PkVLLLDEPTSGLDp~sr~~l~-~lL~~l~-~g~T 1112 (2272)
T TIGR01257 1038 AQLEMEAMLEDTGLHHKRNEE-AQDLSGGMQRKLSVAIAFVG--DAKVVVLDEPTSGVDPYSRRSIW-DLLLKYR-SGRT 1112 (2272)
T ss_pred HHHHHHHHHHHcCCchhhcCC-hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHh-CCCE
Confidence 45677888886542111 111111 2344999999999 999999999999 9999999999 8999885 5788
Q ss_pred EEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
|+++ +|++.+...++++++....+
T Consensus 1113 IIlt----THdmdea~~laDrI~iL~~G 1136 (2272)
T TIGR01257 1113 IIMS----THHMDEADLLGDRIAIISQG 1136 (2272)
T ss_pred EEEE----ECCHHHHHHhCCEEEEEECC
Confidence 7655 47777777777766554433
No 268
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.7e-19 Score=157.66 Aligned_cols=148 Identities=17% Similarity=0.212 Sum_probs=99.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-----CceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~-----~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++|+ +|+|.+.|.+.. ...+.| +++ .++.+++.
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~ 114 (261)
T PRK14258 35 VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKI 114 (261)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHHHHHHHHHHh
Confidence 68999999999999999999999985 799999887641 112333 221 34444332
Q ss_pred ------------HHHHHHHhCCCCCC-Cc-hhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNG-GL-IYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g-~~-~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++.+++...- .. ......+. +.+++.||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~vllLDEP~~~LD~~~~~~l~-~ 191 (261)
T PRK14258 115 VGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV--KPKVLLMDEPCFGLDPIASMKVE-S 191 (261)
T ss_pred cCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-H
Confidence 23455566653210 00 00001111 2334999999999 999999999999 9999999988 8
Q ss_pred HHHHHHh-CCCeEEEEEeccccccccHHHHHHhhHHhh
Q 025642 122 FVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (250)
Q Consensus 122 ll~~l~~-~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~ 158 (250)
+++++++ .+.+++++. |...+..++++.++...
T Consensus 192 ~l~~l~~~~~~tiiivs----H~~~~i~~~~d~i~~l~ 225 (261)
T PRK14258 192 LIQSLRLRSELTMVIVS----HNLHQVSRLSDFTAFFK 225 (261)
T ss_pred HHHHHHHhCCCEEEEEE----CCHHHHHHhcCEEEEEc
Confidence 8888764 478877664 77766666666554433
No 269
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.9e-19 Score=157.32 Aligned_cols=146 Identities=17% Similarity=0.228 Sum_probs=96.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCc--------cCCCCC-Ccc-----cChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA--------AENFDY-PVA-----MDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~--------~~~~~y-~~~-----~~i~~~i~------ 58 (250)
+++|+||||||||||+++|+|+++| ++|+|.+.|.+.. ...+.| +++ .++.+++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~ 110 (249)
T PRK14253 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQ 110 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhc
Confidence 5799999999999999999999986 5899999886542 122334 221 24444432
Q ss_pred -----------HHHHHHHhCCCCCC-Cch-hhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025642 59 -----------LEDVMEELGLGPNG-GLI-YCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (250)
Q Consensus 59 -----------~~~vm~~~~L~~~g-~~~-~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~l 122 (250)
+.+.++.+++.+.- ... .....+ .+++++.||++++. +|+++|+|||++ +|+.++..+. ++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~ 187 (249)
T PRK14253 111 GIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM--EPDVILMDEPTSALDPIATHKIE-EL 187 (249)
T ss_pred CCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 12233444543210 000 000111 12334999999999 999999999999 9999999988 88
Q ss_pred HHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 123 l~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++++++ +.+++++ +|.......+++.++..
T Consensus 188 l~~~~~-~~tii~~----sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 188 MEELKK-NYTIVIV----THSMQQARRISDRTAFF 217 (249)
T ss_pred HHHHhc-CCeEEEE----ecCHHHHHHhCCEEEEE
Confidence 998865 5677655 46666666666654443
No 270
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.1e-19 Score=157.66 Aligned_cols=144 Identities=14% Similarity=0.192 Sum_probs=95.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++ |++|+|.+.|.++. ...+.| +++ .++.+.+.
T Consensus 38 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~ 117 (264)
T PRK14243 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARI 117 (264)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHHHHHHhhhhh
Confidence 589999999999999999999976 37999999886542 122333 221 24444432
Q ss_pred ----------HHHHHHHhCCCCCCC-c--hhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 59 ----------LEDVMEELGLGPNGG-L--IYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 59 ----------~~~vm~~~~L~~~g~-~--~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
+.++++.+++...-. . ....+... +++++.||++++. +|+++|+|||++ +|+.++..+. +++
T Consensus 118 ~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L 194 (264)
T PRK14243 118 NGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV--QPEVILMDEPCSALDPISTLRIE-ELM 194 (264)
T ss_pred cCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHH
Confidence 122334444421000 0 00001111 2334999999999 999999999999 9999999988 888
Q ss_pred HHHHhCCCeEEEEEeccccccccHHHHHHhhH
Q 025642 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 124 ~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
+++++ +.+++++ +|...+...+++.++
T Consensus 195 ~~~~~-~~tvi~v----tH~~~~~~~~~d~v~ 221 (264)
T PRK14243 195 HELKE-QYTIIIV----THNMQQAARVSDMTA 221 (264)
T ss_pred HHHhc-CCEEEEE----ecCHHHHHHhCCEEE
Confidence 88865 4677655 477766666666444
No 271
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=1.7e-19 Score=157.79 Aligned_cols=135 Identities=18% Similarity=0.173 Sum_probs=106.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhh-hHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELI-SLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i-~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
+++++|++||||||+-|++.|+++|++|+|++.|.|...-. ..+.. .+.++++.+|+.+.-...|..+...
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------KEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 57999999999999999999999999999999998853221 11122 2788999999887655555555554
Q ss_pred -hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEEEeccccccccHHHHHHh
Q 025642 83 -DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISG 153 (250)
Q Consensus 83 -~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~ 153 (250)
+.+++.|||||+. +|+++++|||++ +|...+.++. +++..++++ |.+.+.+ +|+++-...+++.
T Consensus 113 GQrQRi~IARALal--~P~liV~DEpvSaLDvSiqaqIl-nLL~dlq~~~~lt~lFI----sHDL~vv~~isdr 179 (268)
T COG4608 113 GQRQRIGIARALAL--NPKLIVADEPVSALDVSVQAQIL-NLLKDLQEELGLTYLFI----SHDLSVVRYISDR 179 (268)
T ss_pred hhhhhHHHHHHHhh--CCcEEEecCchhhcchhHHHHHH-HHHHHHHHHhCCeEEEE----EEEHHhhhhhccc
Confidence 3456999999999 999999999999 9999999999 999999864 8776554 4666544444443
No 272
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.4e-19 Score=156.09 Aligned_cols=144 Identities=19% Similarity=0.275 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCcc---------CCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~~---------~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+|+||||||||+++|+|+++| ++|+|.++|.+... ..+.| +++ .++.+++.
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~ 114 (259)
T PRK14260 35 VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRI 114 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHHHHHHHHHH
Confidence 5899999999999999999999885 48999998875421 12333 221 34444432
Q ss_pred ------------HHHHHHHhCCCCC--CCc-hhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPN--GGL-IYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~--g~~-~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++.+++... ... ....+.. .+++++.||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 191 (259)
T PRK14260 115 SAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI--KPKVLLMDEPCSALDPIATMKVE-E 191 (259)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-H
Confidence 2344555666321 000 0000111 12334999999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhH
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
+++++++ +.+++++ +|...+...+++.++
T Consensus 192 ~l~~~~~-~~tiii~----tH~~~~i~~~~d~i~ 220 (259)
T PRK14260 192 LIHSLRS-ELTIAIV----THNMQQATRVSDFTA 220 (259)
T ss_pred HHHHHhc-CCEEEEE----eCCHHHHHHhcCeEE
Confidence 8888865 5677655 477766666666443
No 273
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.4e-19 Score=155.82 Aligned_cols=144 Identities=14% Similarity=0.198 Sum_probs=95.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-----CceEEEeecCCcc---------CCCCC-Cc------ccChhhhhhH---
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PV------AMDIRELISL--- 59 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~-----~G~i~i~~~dp~~---------~~~~y-~~------~~~i~~~i~~--- 59 (250)
+++|+||||||||||+++|+|+++|. +|+|.+.|.+... ..+.| ++ ..++.+++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~ 111 (252)
T PRK14272 32 VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLK 111 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHH
Confidence 57899999999999999999999874 7999998876421 12334 22 2355554431
Q ss_pred --------------HHHHHHhCCCCCCCchhhhhhhh------hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHH
Q 025642 60 --------------EDVMEELGLGPNGGLIYCMEHLE------DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (250)
Q Consensus 60 --------------~~vm~~~~L~~~g~~~~~~~~~~------~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i 118 (250)
.++++.+++... ....++... +++++.||++++. +|+++|+|||++ +|+.++..+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l 187 (252)
T PRK14272 112 LAGIRDRDHLMEVAERSLRGAALWDE--VKDRLKTPATGLSGGQQQRLCIARALAV--EPEILLMDEPTSALDPASTARI 187 (252)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCcchh--hhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 111222332110 000011111 2233899999999 999999999999 999999998
Q ss_pred HHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 119 ~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
. ++++++++ +.+++++ +|.......+++.++..
T Consensus 188 ~-~~l~~~~~-~~tiii~----sH~~~~~~~~~d~i~~l 220 (252)
T PRK14272 188 E-DLMTDLKK-VTTIIIV----THNMHQAARVSDTTSFF 220 (252)
T ss_pred H-HHHHHHhc-CCeEEEE----eCCHHHHHHhCCEEEEE
Confidence 8 88888864 6777655 46666556665554433
No 274
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.3e-19 Score=159.58 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=98.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCc--------cCCCCC-Ccc-----cChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA--------AENFDY-PVA-----MDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~--------~~~~~y-~~~-----~~i~~~i~------ 58 (250)
+++|+||||||||||+++|+|+++| ++|+|.+.|.+.. ...+.| +++ .++++++.
T Consensus 49 ~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~ 128 (276)
T PRK14271 49 VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAH 128 (276)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHHHHHHHhc
Confidence 5899999999999999999999985 6999999886531 122333 221 34554432
Q ss_pred -----------HHHHHHHhCCCCCCC--chhhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025642 59 -----------LEDVMEELGLGPNGG--LIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (250)
Q Consensus 59 -----------~~~vm~~~~L~~~g~--~~~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~l 122 (250)
+.++++.+++..... .......+ .+.++++||++++. +|+++|+|||++ +|+.++..+. ++
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 205 (276)
T PRK14271 129 KLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV--NPEVLLLDEPTSALDPTTTEKIE-EF 205 (276)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HH
Confidence 123456666642100 00000111 12334999999999 999999999999 9999999988 88
Q ss_pred HHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 123 l~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++++++ +.+++++ +|.......+++.++..
T Consensus 206 L~~~~~-~~tiiiv----sH~~~~~~~~~dri~~l 235 (276)
T PRK14271 206 IRSLAD-RLTVIIV----THNLAQAARISDRAALF 235 (276)
T ss_pred HHHHhc-CCEEEEE----eCCHHHHHHhCCEEEEE
Confidence 888865 4677655 36666555665555443
No 275
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.79 E-value=4.1e-19 Score=148.34 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=85.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--CCCCCCcccChhhhhhHHHHHHHhCCCCC-CCchhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELISLEDVMEELGLGPN-GGLIYCMEH 80 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--~~~~y~~~~~i~~~i~~~~vm~~~~L~~~-g~~~~~~~~ 80 (250)
.++|+||||||||||++++.+ ++|++.+.+..+.. +.+.|.+ + .++++++++++. .......-.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~-----q----~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFID-----Q----LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEh-----H----HHHHHHcCCCccccCCCcCcCC
Confidence 578999999999999999853 68999987664322 1122311 1 578889998753 111111011
Q ss_pred hhhhHHHHHHHHHhcCCC--CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 81 LEDNLDDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 81 ~~~~ls~~la~aL~~~~~--~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
..+++++.+|++++. + |+++|+|||++ +|+.++..+. +.++++++.|.+++++.
T Consensus 90 gGq~qrl~laral~~--~~~p~llLlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tvIivS 146 (176)
T cd03238 90 GGELQRVKLASELFS--EPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILIE 146 (176)
T ss_pred HHHHHHHHHHHHHhh--CCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 123344999999999 9 99999999999 9999999988 88888876788887664
No 276
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4.1e-19 Score=155.40 Aligned_cols=144 Identities=16% Similarity=0.238 Sum_probs=93.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC--C---CCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~--~---~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+.+ | ++|+|.+.|.++. ...+.| +++ .++.+.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~ 112 (252)
T PRK14255 33 ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRL 112 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHH
Confidence 589999999999999999999865 4 4899999887542 122334 221 24444433
Q ss_pred ------------HHHHHHHhCCCCCCC-c-hhhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNGG-L-IYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g~-~-~~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.+.++.+++...-. . ......+ .+++++.||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 189 (252)
T PRK14255 113 AGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV--KPDVILLDEPTSALDPISSTQIE-N 189 (252)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-H
Confidence 112233444421100 0 0000111 12334899999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhH
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
+++++++ +.+++++. |.......+++.++
T Consensus 190 ~l~~~~~-~~tii~vs----H~~~~~~~~~d~i~ 218 (252)
T PRK14255 190 MLLELRD-QYTIILVT----HSMHQASRISDKTA 218 (252)
T ss_pred HHHHHHh-CCEEEEEE----CCHHHHHHhCCEEE
Confidence 8888865 46776553 66655555555443
No 277
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=6.2e-19 Score=156.62 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=95.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCc---------cCCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~---------~~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|++++ .+|+|.+.|.+.. ...+.| +++ .++.+.+.
T Consensus 48 ~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~ 127 (274)
T PRK14265 48 IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRA 127 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHHHHhHHHh
Confidence 5899999999999999999999863 5899999987642 122333 221 14444442
Q ss_pred ----------HHHHHHHhCCCCCCC-ch-hhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 59 ----------LEDVMEELGLGPNGG-LI-YCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 59 ----------~~~vm~~~~L~~~g~-~~-~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
+.+.++.+++..... .. .....+ .+++++.||++++. +|+++|+|||++ ||+.++..+. +++
T Consensus 128 ~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~L 204 (274)
T PRK14265 128 NGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM--KPDVLLMDEPCSALDPISTRQVE-ELC 204 (274)
T ss_pred cCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 123344455421100 00 000111 12344999999999 999999999999 9999999998 888
Q ss_pred HHHHhCCCeEEEEEeccccccccHHHHHHhhH
Q 025642 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 124 ~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
+++++ +.+++++ +|......++++.++
T Consensus 205 ~~~~~-~~tiii~----sH~~~~~~~~~d~i~ 231 (274)
T PRK14265 205 LELKE-QYTIIMV----THNMQQASRVADWTA 231 (274)
T ss_pred HHHhc-CCEEEEE----eCCHHHHHHhCCEEE
Confidence 88865 5676555 477766666655443
No 278
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.79 E-value=5.6e-19 Score=168.53 Aligned_cols=138 Identities=19% Similarity=0.243 Sum_probs=95.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCceEEEeecCCc--------cCCCCC-Ccc--------cChhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPA--------AENFDY-PVA--------MDIRELI-------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~dp~--------~~~~~y-~~~--------~~i~~~i-------- 57 (250)
+++|+||||||||||+++|+|+.++ ++|+|++.|.+.. ...++| +++ .++++.+
T Consensus 288 ~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~ 367 (490)
T PRK10938 288 HWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSI 367 (490)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhcccccc
Confidence 5899999999999999999998765 6999999886431 122444 211 1122211
Q ss_pred ------------hHHHHHHHhCCCC-CCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025642 58 ------------SLEDVMEELGLGP-NGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (250)
Q Consensus 58 ------------~~~~vm~~~~L~~-~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~l 122 (250)
.++++++.+++.+ .... ...+... ++++++||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~ 443 (490)
T PRK10938 368 GIYQAVSDRQQKLAQQWLDILGIDKRTADA-PFHSLSWGQQRLALIVRALVK--HPTLLILDEPLQGLDPLNRQLVR-RF 443 (490)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCchhhccC-chhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HH
Confidence 1456777888865 3211 1111121 3344999999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCC-eEEEEEeccccccccHHH
Q 025642 123 VDHLKSRNF-NVCAVYLLDSQFITDVTK 149 (250)
Q Consensus 123 l~~l~~~~~-~vi~v~l~d~~~~~d~~~ 149 (250)
++++++++. +++++. |...+...
T Consensus 444 L~~l~~~~~~tviivs----Hd~~~~~~ 467 (490)
T PRK10938 444 VDVLISEGETQLLFVS----HHAEDAPA 467 (490)
T ss_pred HHHHHhcCCcEEEEEe----cchhhhhh
Confidence 999876654 465553 55555444
No 279
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.7e-18 Score=152.46 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=94.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEee------cCCc-------cCCCCC-------CcccChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN------LDPA-------AENFDY-------PVAMDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~------~dp~-------~~~~~y-------~~~~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.| .+.. ...+.| .+..++.+++.
T Consensus 38 ~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~ 117 (257)
T PRK14246 38 IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKS 117 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHh
Confidence 5899999999999999999999999987766554 3321 122333 12234444332
Q ss_pred ------------HHHHHHHhCCCCC-----CCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 59 ------------LEDVMEELGLGPN-----GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~-----g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
+.++++.+++.+. ...... -...++++..||++++. +|+++++|||+. ||+.++..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-LS~G~~qrl~laral~~--~P~llllDEPt~~LD~~~~~~l~- 193 (257)
T PRK14246 118 HGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQ-LSGGQQQRLTIARALAL--KPKVLLMDEPTSMIDIVNSQAIE- 193 (257)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCccc-CCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 2345566777531 011000 11112344899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHHHHHHhh
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~ 154 (250)
+++.++++ +.+++++ +|.......+++.+
T Consensus 194 ~~l~~~~~-~~tiilv----sh~~~~~~~~~d~v 222 (257)
T PRK14246 194 KLITELKN-EIAIVIV----SHNPQQVARVADYV 222 (257)
T ss_pred HHHHHHhc-CcEEEEE----ECCHHHHHHhCCEE
Confidence 88888854 5777655 46665555555543
No 280
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=5.7e-19 Score=154.69 Aligned_cols=145 Identities=16% Similarity=0.214 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCcc---------CCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~~---------~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+.++ ++|+|.+.|.+... ..+.| +++ .++++++.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~ 113 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRI 113 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHHHHhhHHh
Confidence 5899999999999999999998753 48999998866421 12333 221 13443332
Q ss_pred ------------HHHHHHHhCCCCCC-C-chhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNG-G-LIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g-~-~~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++.+++.+.- . .......+. +++++.||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~l~-~ 190 (253)
T PRK14261 114 HGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV--NPEVILMDEPCSALDPIATAKIE-D 190 (253)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-H
Confidence 23344555553210 0 000001111 2234899999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+++++++ +.+++++ +|.......+++.++.
T Consensus 191 ~l~~~~~-~~tvii~----sh~~~~~~~~~d~v~~ 220 (253)
T PRK14261 191 LIEDLKK-EYTVIIV----THNMQQAARVSDYTGF 220 (253)
T ss_pred HHHHHhh-CceEEEE----EcCHHHHHhhCCEEEE
Confidence 8888865 5676555 4666655555554433
No 281
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=8.2e-19 Score=168.99 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=94.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC-c--cCCCCCCcccChhhhh-----------------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-A--AENFDYPVAMDIRELI----------------------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp-~--~~~~~y~~~~~i~~~i----------------------- 57 (250)
+++|+||||||||||+++|+|+++|++|+|.+.+... + .+.....+..++.+.+
T Consensus 29 ~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (530)
T PRK15064 29 RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEM 108 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhccccc
Confidence 5899999999999999999999999999999875320 0 0111111222332221
Q ss_pred -------------------------hHHHHHHHhCCCCCCCchhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-
Q 025642 58 -------------------------SLEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ- 109 (250)
Q Consensus 58 -------------------------~~~~vm~~~~L~~~g~~~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~- 109 (250)
.+.++++.+|+...... .....+. ++++++||++|+. +|+++|+||||+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~LSgGq~qrv~lA~aL~~--~p~lLlLDEPt~~ 185 (530)
T PRK15064 109 SEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHY-GLMSEVAPGWKLRVLLAQALFS--NPDILLLDEPTNN 185 (530)
T ss_pred ccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhc-CchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCcc
Confidence 13456777777532100 0012222 2344999999999 999999999999
Q ss_pred cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhh
Q 025642 110 IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (250)
Q Consensus 110 LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~ 158 (250)
||+.++..+. ++++ +.+.+|++|. |.......+++.++..-
T Consensus 186 LD~~~~~~l~-~~l~---~~~~tiiivs----Hd~~~~~~~~d~i~~l~ 226 (530)
T PRK15064 186 LDINTIRWLE-DVLN---ERNSTMIIIS----HDRHFLNSVCTHMADLD 226 (530)
T ss_pred cCHHHHHHHH-HHHH---hCCCeEEEEe----CCHHHHHhhcceEEEEe
Confidence 9999998877 6654 3577776663 66665566666554433
No 282
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1e-18 Score=146.41 Aligned_cols=136 Identities=16% Similarity=0.202 Sum_probs=100.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC---cc------CCCCCCcccChhhhhh----------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AA------ENFDYPVAMDIRELIS---------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp---~~------~~~~y~~~~~i~~~i~---------------- 58 (250)
.++++||+|||||||+++++|+.+|..|+|.++|... .. ++-...|..++.+++.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~ 112 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI 112 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3689999999999999999999999999999998743 22 2223345556666664
Q ss_pred HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 59 LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 59 ~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
+.+.+..+||+..+ ..|..+... .++++-|||||+. +|+.+++|||+. +|..++..+-.-+++-+++.|+.++.|
T Consensus 113 a~q~l~~VgL~~~~-~~~i~qLSGGmrQRvGiARALa~--eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lli 189 (259)
T COG4525 113 AHQMLALVGLEGAE-HKYIWQLSGGMRQRVGIARALAV--EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLI 189 (259)
T ss_pred HHHHHHHhCccccc-ccceEeecchHHHHHHHHHHhhc--CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 66788889998764 222222221 2455999999999 999999999999 999999887744445555668887665
Q ss_pred Eecccccccc
Q 025642 137 YLLDSQFITD 146 (250)
Q Consensus 137 ~l~d~~~~~d 146 (250)
. |.+.+
T Consensus 190 T----H~ieE 195 (259)
T COG4525 190 T----HDIEE 195 (259)
T ss_pred e----ccHHH
Confidence 4 55543
No 283
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.78 E-value=4.2e-19 Score=143.42 Aligned_cols=107 Identities=18% Similarity=0.138 Sum_probs=80.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~ 83 (250)
+++|+||||||||||+++|+|+++|++|+|.++|. ..+.|.+. -.+ .+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~-------------------lS~---------G~ 75 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQ-------------------LSG---------GE 75 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEcc-------------------CCH---------HH
Confidence 57899999999999999999999999999999873 23344211 111 12
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHH
Q 025642 84 NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s 152 (250)
.+++.||++++. +|+++|+|||++ +|+.++..+. ++++++ +.+++++ +|...+...+++
T Consensus 76 ~~rv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~---~~til~~----th~~~~~~~~~d 135 (144)
T cd03221 76 KMRLALAKLLLE--NPNLLLLDEPTNHLDLESIEALE-EALKEY---PGTVILV----SHDRYFLDQVAT 135 (144)
T ss_pred HHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHc---CCEEEEE----ECCHHHHHHhCC
Confidence 344899999999 999999999999 9999998887 777765 3566555 355554444444
No 284
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.78 E-value=1.4e-18 Score=168.91 Aligned_cols=129 Identities=19% Similarity=0.168 Sum_probs=91.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh-----------H
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS-----------L 59 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~-----------~ 59 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| +|+ -++++++. +
T Consensus 371 ~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i 450 (582)
T PRK11176 371 TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQI 450 (582)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHH
Confidence 479999999999999999999999999999999977532 34555 332 34666554 3
Q ss_pred HHHHHHhCCCC------CCCchhh-----hh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 60 EDVMEELGLGP------NGGLIYC-----ME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 60 ~~vm~~~~L~~------~g~~~~~-----~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
.++++..++.+ +| .-.. .+ .-.++++..|||++.. +|+++|+||||+ +|+.+...++ +.+.++
T Consensus 451 ~~al~~~~l~~~i~~lp~G-ldt~ig~~g~~LSGGqrQRi~LARall~--~~~ililDEptsaLD~~t~~~i~-~~l~~~ 526 (582)
T PRK11176 451 EEAARMAYAMDFINKMDNG-LDTVIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDEL 526 (582)
T ss_pred HHHHHHhCcHHHHHhcccc-cCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 33444444321 11 0000 01 1223456999999999 999999999999 9999999988 666776
Q ss_pred HhCCCeEEEEE
Q 025642 127 KSRNFNVCAVY 137 (250)
Q Consensus 127 ~~~~~~vi~v~ 137 (250)
. +++|+++|.
T Consensus 527 ~-~~~tvI~Vt 536 (582)
T PRK11176 527 Q-KNRTSLVIA 536 (582)
T ss_pred h-CCCEEEEEe
Confidence 4 467776663
No 285
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.78 E-value=1.2e-18 Score=169.65 Aligned_cols=124 Identities=16% Similarity=0.255 Sum_probs=90.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~ 60 (250)
.++|+||+|||||||++.|+|++ |.+|+|.++|.|... +.++| +| +-+++|++. +.
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~ 456 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQ 456 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHH
Confidence 47999999999999999999999 999999999977532 34555 33 235777765 23
Q ss_pred HHHHHhCC---------------CCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 61 DVMEELGL---------------GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 61 ~vm~~~~L---------------~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
++++..++ |++|.. -.-.++++.+||||+.. +|+++||||||+ +|..+.+.+. +.++
T Consensus 457 ~al~~a~l~~~i~~lp~G~dT~vge~G~~----LSGGQrQRialARAll~--~~~IliLDE~TSaLD~~te~~i~-~~l~ 529 (588)
T PRK11174 457 QALENAWVSEFLPLLPQGLDTPIGDQAAG----LSVGQAQRLALARALLQ--PCQLLLLDEPTASLDAHSEQLVM-QALN 529 (588)
T ss_pred HHHHHhCHHHHHHhcccccccccccCCCC----CCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHH
Confidence 33333222 222211 11224566999999999 999999999999 9999999988 6777
Q ss_pred HHHhCCCeEEEE
Q 025642 125 HLKSRNFNVCAV 136 (250)
Q Consensus 125 ~l~~~~~~vi~v 136 (250)
++. .++|+++|
T Consensus 530 ~~~-~~~TvIiI 540 (588)
T PRK11174 530 AAS-RRQTTLMV 540 (588)
T ss_pred HHh-CCCEEEEE
Confidence 764 46777655
No 286
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.78 E-value=6e-19 Score=169.65 Aligned_cols=128 Identities=21% Similarity=0.266 Sum_probs=91.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-Ccc-----cChhhhhh----------HHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PVA-----MDIRELIS----------LED 61 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-~~~-----~~i~~~i~----------~~~ 61 (250)
.++|+||+|||||||++.|.|+++|++|+|.++|.|... +.++| +|+ -+++|++. +.+
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~ 442 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWA 442 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHH
Confidence 479999999999999999999999999999999976531 34555 332 35777765 334
Q ss_pred HHHHhCCC------CCCCchhh-----hh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 62 VMEELGLG------PNGGLIYC-----ME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 62 vm~~~~L~------~~g~~~~~-----~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+++..++. |+| .... .+ ...++++.+|||++.. +|+++||||||+ +|..+.+.+. +.++++ .
T Consensus 443 al~~a~l~~~i~~lp~G-ldT~ige~G~~LSGGQrQRiaiARall~--~~~iliLDE~TSaLD~~te~~I~-~~l~~~-~ 517 (529)
T TIGR02868 443 ALERVGLADWLRSLPDG-LDTVLGEGGARLSGGERQRLALARALLA--DAPILLLDEPTEHLDAGTESELL-EDLLAA-L 517 (529)
T ss_pred HHHHcCCHHHHHhCccc-ccchhccccCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHh-c
Confidence 44444432 111 0000 01 1224556999999999 999999999999 9999999988 666665 3
Q ss_pred CCCeEEEE
Q 025642 129 RNFNVCAV 136 (250)
Q Consensus 129 ~~~~vi~v 136 (250)
.++|+++|
T Consensus 518 ~~~TvIiI 525 (529)
T TIGR02868 518 SGKTVVVI 525 (529)
T ss_pred CCCEEEEE
Confidence 46777665
No 287
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.78 E-value=4.7e-19 Score=155.85 Aligned_cols=128 Identities=17% Similarity=0.118 Sum_probs=84.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh---------HHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LED 61 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~---------~~~ 61 (250)
.++|+|+||||||||+++|+|+++|.+|+|.+.|.+... ..+.| +++ .++++.+. +.+
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~ 128 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWE 128 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHH
Confidence 589999999999999999999999999999998876421 12333 111 12332221 222
Q ss_pred HHHHhCCC-----------CCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 62 VMEELGLG-----------PNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 62 vm~~~~L~-----------~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+++..++. +..+.. ..+.. .+.+++.||++++. +|+++|+|||++ +|+.++..+. ++++++.
T Consensus 129 ~l~~~~l~~~~~~~~~~l~~~~~~~-~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~~- 203 (257)
T cd03288 129 ALEIAQLKNMVKSLPGGLDAVVTEG-GENFSVGQRQLFCLARAFVR--KSSILIMDEATASIDMATENILQ-KVVMTAF- 203 (257)
T ss_pred HHHHhCcHHHHhhcccccCcEeccC-CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHhc-
Confidence 22322322 100000 00111 13344899999999 999999999999 9999998887 7777774
Q ss_pred CCCeEEEE
Q 025642 129 RNFNVCAV 136 (250)
Q Consensus 129 ~~~~vi~v 136 (250)
++.+++++
T Consensus 204 ~~~tiii~ 211 (257)
T cd03288 204 ADRTVVTI 211 (257)
T ss_pred CCCEEEEE
Confidence 47777655
No 288
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.78 E-value=2.2e-19 Score=178.41 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=89.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-------cCCCCC-Ccc-----cChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PVA-----MDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-------~~~~~y-~~~-----~~i~~~i~----------~~ 60 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.|.. .+.++| +|+ -+++|++. +.
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~ 586 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLV 586 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHH
Confidence 47899999999999999999999999999999998753 234555 332 35777764 33
Q ss_pred HHHHHhCCC---------------CCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 61 DVMEELGLG---------------PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 61 ~vm~~~~L~---------------~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
++++..++. ++|.. -...++++.+|||++.. +|+++||||||+ ||..+.+.+. +.++
T Consensus 587 ~al~~~~l~~~i~~lp~gl~t~i~e~G~~----LSGGQrQRiaLARall~--~p~iliLDEptS~LD~~te~~i~-~~l~ 659 (710)
T TIGR03796 587 RACKDAAIHDVITSRPGGYDAELAEGGAN----LSGGQRQRLEIARALVR--NPSILILDEATSALDPETEKIID-DNLR 659 (710)
T ss_pred HHHHHhCCHHHHHhCcCcccceeccCCCC----CCHHHHHHHHHHHHHhh--CCCEEEEECccccCCHHHHHHHH-HHHH
Confidence 344444432 12210 11123456999999999 999999999999 9999998888 4444
Q ss_pred HHHhCCCeEEEE
Q 025642 125 HLKSRNFNVCAV 136 (250)
Q Consensus 125 ~l~~~~~~vi~v 136 (250)
+ .++|+++|
T Consensus 660 ~---~~~T~Iii 668 (710)
T TIGR03796 660 R---RGCTCIIV 668 (710)
T ss_pred h---cCCEEEEE
Confidence 3 46777665
No 289
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.6e-18 Score=141.99 Aligned_cols=130 Identities=13% Similarity=0.070 Sum_probs=92.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccC------CCCC-------CcccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE------NFDY-------PVAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~------~~~y-------~~~~~i~~~i~------------ 58 (250)
.+.|.||||||||||+|+++|+.+|++|+|++.|..+... ..-| .+.+++.|++.
T Consensus 30 ~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~ 109 (209)
T COG4133 30 ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAA 109 (209)
T ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchh
Confidence 3679999999999999999999999999999987665332 1112 33456666554
Q ss_pred -HHHHHHHhCCCCCCCchhhhhhhhhhH-HHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEE
Q 025642 59 -LEDVMEELGLGPNGGLIYCMEHLEDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVC 134 (250)
Q Consensus 59 -~~~vm~~~~L~~~g~~~~~~~~~~~~l-s~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~vi 134 (250)
+.++++.+||....... +-.....++ +++||+-.+. .+++.|+|||++ +|......+- .++..-... |+.+.
T Consensus 110 ~i~~Al~~vgL~g~~dlp-~~~LSAGQqRRvAlArL~ls--~~pLWiLDEP~taLDk~g~a~l~-~l~~~H~~~GGiVll 185 (209)
T COG4133 110 TIWEALAQVGLAGLEDLP-VGQLSAGQQRRVALARLWLS--PAPLWILDEPFTALDKEGVALLT-ALMAAHAAQGGIVLL 185 (209)
T ss_pred hHHHHHHHcCcccccccc-hhhcchhHHHHHHHHHHHcC--CCCceeecCcccccCHHHHHHHH-HHHHHHhcCCCEEEE
Confidence 67788889987654322 212222222 3999999988 999999999999 9999997777 555554444 55554
Q ss_pred EEE
Q 025642 135 AVY 137 (250)
Q Consensus 135 ~v~ 137 (250)
.+|
T Consensus 186 ttH 188 (209)
T COG4133 186 TTH 188 (209)
T ss_pred ecC
Confidence 444
No 290
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.78 E-value=8.8e-19 Score=169.23 Aligned_cols=130 Identities=23% Similarity=0.289 Sum_probs=89.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~------------ 58 (250)
.++|+||||||||||+++++|+++|++|+|.++|.+... +.+.| ++ .-++++++.
T Consensus 346 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 425 (544)
T TIGR01842 346 ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKII 425 (544)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHH
Confidence 478999999999999999999999999999999876421 22333 22 124555553
Q ss_pred -------HHHHHHHh--CCCCCCCchhhhh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 -------LEDVMEEL--GLGPNGGLIYCME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 -------~~~vm~~~--~L~~~g~~~~~~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+++.++.+ |+...-+.. ..+ ...++++..|||++.. +|+++|+||||+ +|..+...+. +.++++.
T Consensus 426 ~~~~~~~~~~~i~~l~~gl~t~~~~~-g~~LSgGq~qrl~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~~~~ 501 (544)
T TIGR01842 426 EAAKLAGVHELILRLPDGYDTVIGPG-GATLSGGQRQRIALARALYG--DPKLVVLDEPNSNLDEEGEQALA-NAIKALK 501 (544)
T ss_pred HHHHHhChHHHHHhCccccccccCCC-cCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccccCHHHHHHHH-HHHHHHh
Confidence 22333333 222110000 001 1123455999999999 999999999999 9999999988 7777775
Q ss_pred hCCCeEEEEE
Q 025642 128 SRNFNVCAVY 137 (250)
Q Consensus 128 ~~~~~vi~v~ 137 (250)
+.+++++++.
T Consensus 502 ~~~~tvi~it 511 (544)
T TIGR01842 502 ARGITVVVIT 511 (544)
T ss_pred hCCCEEEEEe
Confidence 5577876653
No 291
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.78 E-value=2.2e-19 Score=159.77 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cccc-----Chhhhhh---------HHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS---------LED 61 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~~-----~i~~~i~---------~~~ 61 (250)
.++|+||||||||||+++|+|+++ .+|+|+++|.+.+. ..+.| +++. ++++++. +.+
T Consensus 32 ~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~ 110 (275)
T cd03289 32 RVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWK 110 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHH
Confidence 589999999999999999999998 78999999977532 22344 2221 4555442 445
Q ss_pred HHHHhCCCCCCCc-hhhh---------hhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 62 VMEELGLGPNGGL-IYCM---------EHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 62 vm~~~~L~~~g~~-~~~~---------~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
+++.+|+.+.... ...+ ... .+.+++.||++++. +|+++|+|||++ +|+.+...+. +.++++. .
T Consensus 111 ~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~--~p~illlDEpts~LD~~~~~~l~-~~l~~~~-~ 186 (275)
T cd03289 111 VAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPITYQVIR-KTLKQAF-A 186 (275)
T ss_pred HHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HHHHHhc-C
Confidence 6667776532100 0000 011 12344999999999 999999999999 9999998888 7777764 4
Q ss_pred CCeEEEEE
Q 025642 130 NFNVCAVY 137 (250)
Q Consensus 130 ~~~vi~v~ 137 (250)
+.++++|.
T Consensus 187 ~~tii~is 194 (275)
T cd03289 187 DCTVILSE 194 (275)
T ss_pred CCEEEEEE
Confidence 77877664
No 292
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=6.9e-19 Score=155.33 Aligned_cols=145 Identities=17% Similarity=0.239 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCc-----------cCCCCC-Ccc-----cChhhhhh---
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA-----------AENFDY-PVA-----MDIRELIS--- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~-----------~~~~~y-~~~-----~~i~~~i~--- 58 (250)
+++|+||||||||||+++|+|+.+| ++|+|.+.|.+.. ...+.| +++ .++++++.
T Consensus 44 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~ 123 (265)
T PRK14252 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGL 123 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhHH
Confidence 5899999999999999999999875 7999999875421 122344 221 14444432
Q ss_pred --------------HHHHHHHhCCCCC-CCch-hhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025642 59 --------------LEDVMEELGLGPN-GGLI-YCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (250)
Q Consensus 59 --------------~~~vm~~~~L~~~-g~~~-~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~ 119 (250)
+.++++.+++.+. .... .....+ .+++++.||++++. +|+++|+|||++ +|+.++..+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~ 201 (265)
T PRK14252 124 RIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALAT--DPEILLFDEPTSALDPIATASIE 201 (265)
T ss_pred HHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH
Confidence 1233444554310 0000 000111 12344899999999 999999999999 9999999988
Q ss_pred HHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 120 ~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++++++ +.+++++ +|.......+++.++.
T Consensus 202 -~~l~~l~~-~~tiiiv----th~~~~~~~~~d~i~~ 232 (265)
T PRK14252 202 -ELISDLKN-KVTILIV----THNMQQAARVSDYTAY 232 (265)
T ss_pred -HHHHHHHh-CCEEEEE----ecCHHHHHHhCCEEEE
Confidence 88888865 5677655 3666655556554443
No 293
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.78 E-value=5.7e-19 Score=171.67 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=93.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~ 60 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| +| +-++++++. +.
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~ 447 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALI 447 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHH
Confidence 579999999999999999999999999999999987532 23444 32 235777764 45
Q ss_pred HHHHHhCCCC-----CCCchhh------hhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 61 DVMEELGLGP-----NGGLIYC------MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 61 ~vm~~~~L~~-----~g~~~~~------~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
++++..++.+ +| .... .-...++++.+|||++.. +|+++|+||||+ +|..+...+. +.++++.
T Consensus 448 ~al~~~~l~~~i~~p~G-ldT~vge~g~~LSgGqrqRialARall~--~~~ililDE~ts~lD~~t~~~i~-~~l~~~~- 522 (574)
T PRK11160 448 EVLQQVGLEKLLEDDKG-LNAWLGEGGRQLSGGEQRRLGIARALLH--DAPLLLLDEPTEGLDAETERQIL-ELLAEHA- 522 (574)
T ss_pred HHHHHcCCHHHHcCccc-cCchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-
Confidence 5666666542 22 1000 011123455999999999 999999999999 9999999988 7777764
Q ss_pred CCCeEEEE
Q 025642 129 RNFNVCAV 136 (250)
Q Consensus 129 ~~~~vi~v 136 (250)
++++++++
T Consensus 523 ~~~tviii 530 (574)
T PRK11160 523 QNKTVLMI 530 (574)
T ss_pred CCCEEEEE
Confidence 46777655
No 294
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=7.5e-19 Score=153.60 Aligned_cols=142 Identities=15% Similarity=0.258 Sum_probs=93.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEEeecCCcc---------CCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~dp~~---------~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..+.| +++ .++.+++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~ 110 (250)
T PRK14266 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRI 110 (250)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHHHHhHHhh
Confidence 579999999999999999999864 389999999976421 22444 221 13333332
Q ss_pred ------------HHHHHHHhCCCCCC-Cch-hhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNG-GLI-YCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g-~~~-~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++.+++...- ... .....+ .+++++.||++++. +|+++|+|||++ +|+.++..+. +
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEP~~gLD~~~~~~l~-~ 187 (250)
T PRK14266 111 HGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV--SPEVILMDEPCSALDPISTTKIE-D 187 (250)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHHH-H
Confidence 22344555553210 000 000111 12334899999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHh
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~ 153 (250)
+++++++ +.+++++ +|...+...+++.
T Consensus 188 ~l~~~~~-~~tiii~----sh~~~~~~~~~~~ 214 (250)
T PRK14266 188 LIHKLKE-DYTIVIV----THNMQQATRVSKY 214 (250)
T ss_pred HHHHHhc-CCeEEEE----ECCHHHHHhhcCE
Confidence 8888854 6777655 3666555555443
No 295
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=2.2e-18 Score=140.65 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=105.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC------cc-------CCCC-----C--CcccChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP------AA-------ENFD-----Y--PVAMDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp------~~-------~~~~-----y--~~~~~i~~~i~----- 58 (250)
.++++||+|+|||||++.+.=+.-|.+|+..+-|..- .. ++++ | +|.+++-+++-
T Consensus 30 tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~k 109 (242)
T COG4161 30 TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCR 109 (242)
T ss_pred EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHH
Confidence 3679999999999999999999999999999976431 11 1111 2 44555444332
Q ss_pred ------------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
..++++++.+.+.. ..+.+.... ++++++|||+|+. +|++++|||||+ +||....++. ++++
T Consensus 110 v~gl~~~qa~~~a~ellkrlrl~~~a-dr~plhlsggqqqrvaiaralmm--kpqvllfdeptaaldpeitaqvv-~iik 185 (242)
T COG4161 110 VLGLSKDQALARAEKLLKRLRLKPYA-DRYPLHLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIV-SIIK 185 (242)
T ss_pred HhCCCHHHHHHHHHHHHHHhcccccc-ccCceecccchhhhHHHHHHHhc--CCcEEeecCcccccCHHHHHHHH-HHHH
Confidence 56777888887763 223333333 3456999999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEEEeccccccccHHHHHHhhH
Q 025642 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 125 ~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
+++..|.+-++|. |...-..+..+.++
T Consensus 186 el~~tgitqvivt----hev~va~k~as~vv 212 (242)
T COG4161 186 ELAETGITQVIVT----HEVEVARKTASRVV 212 (242)
T ss_pred HHHhcCceEEEEE----eehhHHHhhhhheE
Confidence 9998898865553 55554555555443
No 296
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.78 E-value=3.3e-19 Score=176.54 Aligned_cols=126 Identities=20% Similarity=0.164 Sum_probs=89.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh---------HHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LED 61 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~---------~~~ 61 (250)
.++|+||||||||||++.|+|+++|++|+|.++|.|... +.++| +|+ -+++|++. +.+
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~ 560 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWE 560 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHH
Confidence 478999999999999999999999999999999987632 34555 332 25677764 334
Q ss_pred HHHHhCCCC------CCCchhh-----hh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 62 VMEELGLGP------NGGLIYC-----ME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 62 vm~~~~L~~------~g~~~~~-----~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+++..++.+ .| .-.. .+ ...++++.+|||++.. +|+++||||||+ +|+.+.+.+. +.++++
T Consensus 561 al~~a~l~~~i~~lp~G-~dt~ige~G~~LSGGQrQRialARAll~--~p~iLiLDEpTS~LD~~te~~i~-~~L~~~-- 634 (686)
T TIGR03797 561 AARMAGLAEDIRAMPMG-MHTVISEGGGTLSGGQRQRLLIARALVR--KPRILLFDEATSALDNRTQAIVS-ESLERL-- 634 (686)
T ss_pred HHHHcCcHHHHHhcccc-ccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHh--
Confidence 444444331 11 0000 01 1224456999999999 999999999999 9999998888 555554
Q ss_pred CCCeEEEE
Q 025642 129 RNFNVCAV 136 (250)
Q Consensus 129 ~~~~vi~v 136 (250)
++|+++|
T Consensus 635 -~~T~IiI 641 (686)
T TIGR03797 635 -KVTRIVI 641 (686)
T ss_pred -CCeEEEE
Confidence 4676655
No 297
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.7e-18 Score=141.10 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=85.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~ 83 (250)
+++|+||||||||||+++|+|.++|.+|+|.+.|.+..... ..+.....++-+. +.. .+
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~--------------~~~~~~~i~~~~q------lS~-G~ 85 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP--------------LEELRRRIGYVPQ------LSG-GQ 85 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC--------------HHHHHhceEEEee------CCH-HH
Confidence 68899999999999999999999999999999886532110 0001111111100 011 12
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHH
Q 025642 84 NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s 152 (250)
..+..++++++. +|+++++|||++ +|..++..+. ++++++.+.+.+++++ +|...+...+++
T Consensus 86 ~~r~~l~~~l~~--~~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~~~tii~~----sh~~~~~~~~~d 148 (157)
T cd00267 86 RQRVALARALLL--NPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIV----THDPELAELAAD 148 (157)
T ss_pred HHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eCCHHHHHHhCC
Confidence 344899999999 999999999999 9999998888 8888876656777555 366655555443
No 298
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.1e-18 Score=159.03 Aligned_cols=146 Identities=14% Similarity=0.201 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEEeecCCc---------cCCCCC-Cc-----ccChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~dp~---------~~~~~y-~~-----~~~i~~~i~----- 58 (250)
.++|+||||||||||+++|+|+.+ |++|+|.++|.+.. ...+.| ++ ..++++++.
T Consensus 110 ~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~ 189 (329)
T PRK14257 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRN 189 (329)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHh
Confidence 589999999999999999999986 57999999998753 123444 22 235555554
Q ss_pred ------------HHHHHHHhCCCCCCC-c--hhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNGG-L--IYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g~-~--~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
+.++++..++.+.-. . ....+.. .+++++.|||+++. +|+++|+|||++ +|+.+...+. +
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~--~p~IlLLDEPts~LD~~~~~~i~-~ 266 (329)
T PRK14257 190 NGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL--EPEVLLMDEPTSALDPIATAKIE-E 266 (329)
T ss_pred cCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-H
Confidence 223355555532100 0 0000111 23344999999999 999999999999 9999998877 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
.++.+.+ +.+++++ +|.+.....+++.+++.
T Consensus 267 ~i~~l~~-~~Tii~i----TH~l~~i~~~~Driivl 297 (329)
T PRK14257 267 LILELKK-KYSIIIV----THSMAQAQRISDETVFF 297 (329)
T ss_pred HHHHHhc-CCEEEEE----eCCHHHHHHhCCEEEEE
Confidence 8888865 5777666 37766656666655443
No 299
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.77 E-value=1.8e-18 Score=168.47 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=92.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh---------HHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LED 61 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~---------~~~ 61 (250)
.++|+|+||||||||+++|+|+++|++|+|.++|.+... +.+.| +|+ -++++++. +.+
T Consensus 369 ~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~ 448 (592)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQ 448 (592)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHH
Confidence 478999999999999999999999999999999976532 34555 332 35776665 444
Q ss_pred HHHHhCCCC------CCCchh-----hhhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 62 VMEELGLGP------NGGLIY-----CMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 62 vm~~~~L~~------~g~~~~-----~~~~-~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+++..|+.. +| .-. ..+. ..+.++..|||++.. +|+++|+||||+ +|+.+.+.+. +.++++.+
T Consensus 449 a~~~~gl~~~i~~lp~G-ldt~i~e~g~~LSGGqrQRialARaLl~--~~~illlDEpts~LD~~t~~~i~-~~l~~~~~ 524 (592)
T PRK10790 449 ALETVQLAELARSLPDG-LYTPLGEQGNNLSVGQKQLLALARVLVQ--TPQILILDEATANIDSGTEQAIQ-QALAAVRE 524 (592)
T ss_pred HHHHcCcHHHHHhcccc-ccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHhC
Confidence 555555431 11 000 0011 124456999999999 999999999999 9999999988 77777654
Q ss_pred CCCeEEEE
Q 025642 129 RNFNVCAV 136 (250)
Q Consensus 129 ~~~~vi~v 136 (250)
++|+++|
T Consensus 525 -~~tvIiv 531 (592)
T PRK10790 525 -HTTLVVI 531 (592)
T ss_pred -CCEEEEE
Confidence 5677655
No 300
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.1e-18 Score=166.13 Aligned_cols=141 Identities=14% Similarity=0.128 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC---ccCCC--CCCcccChhhhhh-----------HHHHHHHhC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENF--DYPVAMDIRELIS-----------LEDVMEELG 67 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp---~~~~~--~y~~~~~i~~~i~-----------~~~vm~~~~ 67 (250)
+++|+||||||||||+++|+|+++|++|+|.+.+... ..+.. .+++..++++.+. ++++++.++
T Consensus 347 ~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~ 426 (530)
T PRK15064 347 RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLL 426 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcC
Confidence 5899999999999999999999999999999876321 01111 1222344554432 456777888
Q ss_pred CCC-CCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccc
Q 025642 68 LGP-NGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 144 (250)
Q Consensus 68 L~~-~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~ 144 (250)
+.. .... ...+.. .+++++.||++++. +|+++|+||||+ ||+.++..+. ++++++ +.+++++ +|..
T Consensus 427 l~~~~~~~-~~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~v----sHd~ 495 (530)
T PRK15064 427 FSQDDIKK-SVKVLSGGEKGRMLFGKLMMQ--KPNVLVMDEPTNHMDMESIESLN-MALEKY---EGTLIFV----SHDR 495 (530)
T ss_pred CChhHhcC-cccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHC---CCEEEEE----eCCH
Confidence 742 1110 011111 13344999999999 999999999999 9999998888 776665 3466655 4666
Q ss_pred ccHHHHHHhhH
Q 025642 145 TDVTKFISGCM 155 (250)
Q Consensus 145 ~d~~~~~s~~l 155 (250)
.....+++.++
T Consensus 496 ~~~~~~~d~i~ 506 (530)
T PRK15064 496 EFVSSLATRII 506 (530)
T ss_pred HHHHHhCCEEE
Confidence 65555555443
No 301
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=1.2e-18 Score=147.72 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=112.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCC----------------CCCCcccChhhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN----------------FDYPVAMDIRELIS--------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~----------------~~y~~~~~i~~~i~--------- 58 (250)
.+.|||.||||||||+++++|.+.|++|+|.++|.|..... -+-.+.++|.|++.
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~r 113 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKR 113 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCccc
Confidence 36799999999999999999999999999999998863210 01133566777664
Q ss_pred -------------HHHHHHHhCCCCCCCchhhhhhhhhhHH--HHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025642 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (250)
Q Consensus 59 -------------~~~vm~~~~L~~~g~~~~~~~~~~~~ls--~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~l 122 (250)
..+-++.+++|-..-+-..+..+...++ +.++.|... .|+++++||-|+ |||.+...++ ++
T Consensus 114 gl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~--~pkiLLLDEHTAALDPkta~~vm-~l 190 (263)
T COG1101 114 GLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLH--PPKILLLDEHTAALDPKTAEFVM-EL 190 (263)
T ss_pred ccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcC--CCcEEEecchhhcCCcchHHHHH-HH
Confidence 3344555555422112222455555554 445555555 999999999999 9999999999 77
Q ss_pred HHHHHh-CCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcC
Q 025642 123 VDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 166 (250)
Q Consensus 123 l~~l~~-~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~ 166 (250)
-+++.+ .+.|.++| +|.+.+.-+|=++.++.-++.+.++.
T Consensus 191 T~kiV~~~klTtlMV----THnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 191 TAKIVEEHKLTTLMV----THNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHhcCCceEEE----eccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 777654 47777666 49999999999988888888776653
No 302
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.77 E-value=7.8e-19 Score=174.06 Aligned_cols=125 Identities=21% Similarity=0.216 Sum_probs=90.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~----------~~ 60 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.|... +.+.| +|+ -+++|++. +.
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~ 572 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEIL 572 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHH
Confidence 478999999999999999999999999999999977532 34555 332 35666664 23
Q ss_pred HHHHHhCCC---------------CCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 61 DVMEELGLG---------------PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 61 ~vm~~~~L~---------------~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
++++..++. .+|.. -...++++.+|||++.. +|+++|+||||+ +|+.+...+. +.++
T Consensus 573 ~a~~~~~l~~~i~~lp~gl~T~i~e~G~~----LSgGQrQRlalARall~--~p~iliLDE~Ts~LD~~te~~i~-~~l~ 645 (694)
T TIGR03375 573 RAAELAGVTEFVRRHPDGLDMQIGERGRS----LSGGQRQAVALARALLR--DPPILLLDEPTSAMDNRSEERFK-DRLK 645 (694)
T ss_pred HHHHHcChHHHHHhCcccccceecCCCCC----CCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHH
Confidence 334433332 12210 11223456999999999 999999999999 9999999998 6777
Q ss_pred HHHhCCCeEEEE
Q 025642 125 HLKSRNFNVCAV 136 (250)
Q Consensus 125 ~l~~~~~~vi~v 136 (250)
++.+ ++|+++|
T Consensus 646 ~~~~-~~T~iiI 656 (694)
T TIGR03375 646 RWLA-GKTLVLV 656 (694)
T ss_pred HHhC-CCEEEEE
Confidence 7644 6777655
No 303
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=5.2e-18 Score=152.97 Aligned_cols=142 Identities=18% Similarity=0.281 Sum_probs=93.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEEeecCCcc---------CCCCC-Ccc-----cChhhhhh-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS----- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~dp~~---------~~~~y-~~~-----~~i~~~i~----- 58 (250)
+++|+||||||||||+++|+|+++ |++|+|.+.|.++.. ..+.| +++ .++++++.
T Consensus 73 ~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~ 152 (305)
T PRK14264 73 VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRK 152 (305)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhHHhh
Confidence 579999999999999999999986 689999998876421 22444 222 23444433
Q ss_pred ------------------------HHHHHHHhCCCCCC-Cc--hhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-
Q 025642 59 ------------------------LEDVMEELGLGPNG-GL--IYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ- 109 (250)
Q Consensus 59 ------------------------~~~vm~~~~L~~~g-~~--~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~- 109 (250)
+.++++.+++.+.- .. ....+... +++++.||++|+. +|+++|+|||++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lLLLDEPtsg 230 (305)
T PRK14264 153 HGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAV--DPEVILMDEPASA 230 (305)
T ss_pred cccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccc
Confidence 12233444442100 00 00001111 2234999999999 999999999999
Q ss_pred cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHh
Q 025642 110 IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (250)
Q Consensus 110 LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~ 153 (250)
||+.++..+. ++++++++ +.+++++ +|.......+++.
T Consensus 231 LD~~~~~~l~-~~L~~~~~-~~tiiiv----tH~~~~i~~~~d~ 268 (305)
T PRK14264 231 LDPIATSKIE-DLIEELAE-EYTVVVV----THNMQQAARISDQ 268 (305)
T ss_pred CCHHHHHHHH-HHHHHHhc-CCEEEEE----EcCHHHHHHhcCE
Confidence 9999999988 88888866 4666554 4666655555554
No 304
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.76 E-value=1.4e-18 Score=165.19 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=118.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC----CceEEEeecCCcc-----------CCCCC---------CcccChhhhhh-
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~----~G~i~i~~~dp~~-----------~~~~y---------~~~~~i~~~i~- 58 (250)
++||+|.+||||||+.+++.|++++. +|+|.+.|.|... ..++| .|..+|.+.+.
T Consensus 37 ~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E 116 (539)
T COG1123 37 ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE 116 (539)
T ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHH
Confidence 57999999999999999999999887 7999999976411 22333 22334444433
Q ss_pred ----------------HHHHHHHhCCCCCCCc-hhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025642 59 ----------------LEDVMEELGLGPNGGL-IYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (250)
Q Consensus 59 ----------------~~~vm~~~~L~~~g~~-~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~ 119 (250)
+.++++++|+.+.... .|..+... .++++.||+||+. +|++||+||||. ||+.++.+++
T Consensus 117 ~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~--~P~LLIaDEPTTaLDvt~q~qIL 194 (539)
T COG1123 117 ALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALAL--KPKLLIADEPTTALDVTTQAQIL 194 (539)
T ss_pred HHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHHHH
Confidence 6678889999765432 23333333 3455999999999 999999999999 9999999999
Q ss_pred HHHHHHHHh-CCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCee
Q 025642 120 RNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHV 169 (250)
Q Consensus 120 ~~ll~~l~~-~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v 169 (250)
++++.+++ .|.+++++ ||.+.=...+++.+++.-.+.+.-..|..
T Consensus 195 -~llk~l~~e~g~a~l~I----THDl~Vva~~aDrv~Vm~~G~iVE~G~~~ 240 (539)
T COG1123 195 -DLLKDLQRELGMAVLFI----THDLGVVAELADRVVVMYKGEIVETGPTE 240 (539)
T ss_pred -HHHHHHHHHcCcEEEEE----cCCHHHHHHhcCeEEEEECCEEEEecCHH
Confidence 99999985 58888766 47777777777777666665554444433
No 305
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.76 E-value=9.7e-19 Score=173.73 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=88.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh-----------H
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS-----------L 59 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~-----------~ 59 (250)
.++|+||||||||||++.|+|+++|++|+|.++|.|... +.++| +|+ -+++|++. +
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i 581 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEI 581 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHH
Confidence 479999999999999999999999999999999977521 34455 332 24555554 2
Q ss_pred HHHHHHhCCC---------------CCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 60 EDVMEELGLG---------------PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 60 ~~vm~~~~L~---------------~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
.++++..++. .+|.. -...++++..|||++.. +|+++|+||||+ +|..+...+. +.+
T Consensus 582 ~~a~~~a~l~~~i~~lp~gldt~i~e~G~~----LSgGQrQRialARall~--~p~iliLDE~Ts~LD~~te~~i~-~~L 654 (708)
T TIGR01193 582 WAACEIAEIKDDIENMPLGYQTELSEEGSS----ISGGQKQRIALARALLT--DSKVLILDESTSNLDTITEKKIV-NNL 654 (708)
T ss_pred HHHHHHhCCHHHHHhcccccCcEecCCCCC----CCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHH
Confidence 2333333331 12210 11224456999999999 999999999999 9999999888 555
Q ss_pred HHHHhCCCeEEEE
Q 025642 124 DHLKSRNFNVCAV 136 (250)
Q Consensus 124 ~~l~~~~~~vi~v 136 (250)
+++ .++|+++|
T Consensus 655 ~~~--~~~T~Iii 665 (708)
T TIGR01193 655 LNL--QDKTIIFV 665 (708)
T ss_pred HHh--cCCEEEEE
Confidence 555 36777655
No 306
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.76 E-value=3.5e-18 Score=166.44 Aligned_cols=129 Identities=20% Similarity=0.219 Sum_probs=91.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~----------~~ 60 (250)
.++|+|+||||||||++.|+|+++|.+|+|.++|.+... +.+.| +|+ -++++++. +.
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~ 442 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMR 442 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHH
Confidence 479999999999999999999999999999999977532 34555 332 25676665 22
Q ss_pred HHHHHhCCC------CCCCchhh-----hh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 61 DVMEELGLG------PNGGLIYC-----ME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 61 ~vm~~~~L~------~~g~~~~~-----~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
++++..++. |.| .-.. .+ ...++++.+|||++.. +|+++||||||+ +|+.+...+. +.++++.
T Consensus 443 ~al~~~~l~~~i~~lp~g-ldt~i~~~g~~LSgGq~QRialARall~--~~~iliLDEpts~LD~~t~~~i~-~~l~~~~ 518 (588)
T PRK13657 443 AAAERAQAHDFIERKPDG-YDTVVGERGRQLSGGERQRLAIARALLK--DPPILILDEATSALDVETEAKVK-AALDELM 518 (588)
T ss_pred HHHHHhCHHHHHHhCccc-ccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh
Confidence 334433332 111 0000 01 1124556999999999 999999999999 9999999988 6666664
Q ss_pred hCCCeEEEEE
Q 025642 128 SRNFNVCAVY 137 (250)
Q Consensus 128 ~~~~~vi~v~ 137 (250)
.++++++|.
T Consensus 519 -~~~tvIiit 527 (588)
T PRK13657 519 -KGRTTFIIA 527 (588)
T ss_pred -cCCEEEEEE
Confidence 367776663
No 307
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.76 E-value=3.8e-18 Score=165.18 Aligned_cols=140 Identities=16% Similarity=0.122 Sum_probs=94.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC----ccCCC-CCCcccChhhhhh--------------HHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----AAENF-DYPVAMDIRELIS--------------LEDVME 64 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp----~~~~~-~y~~~~~i~~~i~--------------~~~vm~ 64 (250)
+++|+||||||||||+++|+|+++|++|+|.+.+ +. ..+.. .+.+..++.+.+. ..++++
T Consensus 350 ~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~ 428 (552)
T TIGR03719 350 IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVG 428 (552)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHH
Confidence 6899999999999999999999999999998832 21 01111 1222334444332 345677
Q ss_pred HhCCCCC-CCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 025642 65 ELGLGPN-GGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (250)
Q Consensus 65 ~~~L~~~-g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~ 141 (250)
.+++... .... .-+.. .+++++.||++++. +|+++|+||||+ ||+.++..+. ++++++. + +++++ +
T Consensus 429 ~~~l~~~~~~~~-~~~LSgGe~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-~viiv----s 497 (552)
T TIGR03719 429 RFNFKGSDQQKK-VGQLSGGERNRVHLAKTLKS--GGNVLLLDEPTNDLDVETLRALE-EALLEFA--G-CAVVI----S 497 (552)
T ss_pred hCCCChhHhcCc-hhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHCC--C-eEEEE----e
Confidence 8887431 1111 11111 12344999999999 999999999999 9999999988 7777762 3 55544 4
Q ss_pred cccccHHHHHHhhH
Q 025642 142 QFITDVTKFISGCM 155 (250)
Q Consensus 142 ~~~~d~~~~~s~~l 155 (250)
|.......+++.++
T Consensus 498 Hd~~~~~~~~d~i~ 511 (552)
T TIGR03719 498 HDRWFLDRIATHIL 511 (552)
T ss_pred CCHHHHHHhCCEEE
Confidence 76665566655443
No 308
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.2e-18 Score=155.50 Aligned_cols=152 Identities=15% Similarity=0.179 Sum_probs=108.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-C----CCceEEEeecCCcc-----------CCCCC-Ccc--------cChhhhh-
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-T----VRRTMHIVNLDPAA-----------ENFDY-PVA--------MDIRELI- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-~----~~G~i~i~~~dp~~-----------~~~~y-~~~--------~~i~~~i- 57 (250)
+++|+|.+||||||+.+++.|+++ + .+|+|.+.|.|... ..+++ +|+ .+|.+.+
T Consensus 33 ~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~ 112 (316)
T COG0444 33 ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA 112 (316)
T ss_pred EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHH
Confidence 579999999999999999999997 3 57899999986521 22333 222 2222221
Q ss_pred -----------------hHHHHHHHhCCCCCC--Cchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHH
Q 025642 58 -----------------SLEDVMEELGLGPNG--GLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (250)
Q Consensus 58 -----------------~~~~vm~~~~L~~~g--~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~ 116 (250)
.+.++++.+|+.+.. -..|..+... ..+++.||.+++. +|+++|.||||. ||...+.
T Consensus 113 E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~--~P~LlIADEPTTALDvt~Qa 190 (316)
T COG0444 113 EVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALAL--NPKLLIADEPTTALDVTVQA 190 (316)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhC--CCCEEEeCCCcchhhHHHHH
Confidence 145677788887542 1122222222 2355999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHh-CCCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 117 PVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 117 ~i~~~ll~~l~~-~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
+++ ++++++++ .|.++++|. |++.-...+++.+...-.+.+
T Consensus 191 qIl-~Ll~~l~~e~~~aiilIT----HDl~vva~~aDri~VMYaG~i 232 (316)
T COG0444 191 QIL-DLLKELQREKGTALILIT----HDLGVVAEIADRVAVMYAGRI 232 (316)
T ss_pred HHH-HHHHHHHHhcCCEEEEEe----CCHHHHHHhcceEEEEECcEE
Confidence 999 99999986 588887774 777777777776665555543
No 309
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.76 E-value=1.4e-18 Score=172.23 Aligned_cols=125 Identities=19% Similarity=0.207 Sum_probs=90.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~----------~~ 60 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| +|+ -+++|++. +.
T Consensus 485 ~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~ 564 (694)
T TIGR01846 485 FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVI 564 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHH
Confidence 479999999999999999999999999999999987532 33444 332 35666654 22
Q ss_pred HHHHHhCCC---------------CCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 61 DVMEELGLG---------------PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 61 ~vm~~~~L~---------------~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
++++..++. .+|.. -...++++..|||++.. +|+++|+||||+ +|..+...+. +.++
T Consensus 565 ~a~~~~~l~~~i~~lp~gl~t~i~~~g~~----LSgGq~qri~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~ 637 (694)
T TIGR01846 565 HAAKLAGAHDFISELPQGYNTEVGEKGAN----LSGGQRQRIAIARALVG--NPRILIFDEATSALDYESEALIM-RNMR 637 (694)
T ss_pred HHHHHcChHHHHHhCcCccCcEecCCCCC----CCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHH
Confidence 333333321 11110 11123455999999999 999999999999 9999999998 7777
Q ss_pred HHHhCCCeEEEE
Q 025642 125 HLKSRNFNVCAV 136 (250)
Q Consensus 125 ~l~~~~~~vi~v 136 (250)
++. .+.|++++
T Consensus 638 ~~~-~~~t~i~i 648 (694)
T TIGR01846 638 EIC-RGRTVIII 648 (694)
T ss_pred HHh-CCCEEEEE
Confidence 774 46777655
No 310
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.76 E-value=1.3e-18 Score=168.86 Aligned_cols=125 Identities=21% Similarity=0.256 Sum_probs=89.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~------------ 58 (250)
.++|+||+||||||+++.+.++++|++|+|.++|.|... +.+++ +|+ -++++++.
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~ 436 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIE 436 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHH
Confidence 478999999999999999999999999999999877632 34454 332 35666665
Q ss_pred -------HHHHHHHh--CC----CCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 -------LEDVMEEL--GL----GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 -------~~~vm~~~--~L----~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
+.+.++.+ |+ |++|. .-...++++.+|||++.. +|+++||||||+ +|..+...+. +.++
T Consensus 437 ~a~k~a~~~d~I~~lp~g~dt~vge~G~----~LSgGQrQrlaiARall~--~~~ILILDEaTSalD~~tE~~I~-~~l~ 509 (567)
T COG1132 437 EALKLANAHEFIANLPDGYDTIVGERGV----NLSGGQRQRLAIARALLR--NPPILILDEATSALDTETEALIQ-DALK 509 (567)
T ss_pred HHHHHhChHHHHHhCcccccceecCCCc----cCCHHHHHHHHHHHHHhc--CCCEEEEeccccccCHHhHHHHH-HHHH
Confidence 22223332 22 11221 112234566999999999 999999999999 9999999988 6666
Q ss_pred HHHhCCCeEEEE
Q 025642 125 HLKSRNFNVCAV 136 (250)
Q Consensus 125 ~l~~~~~~vi~v 136 (250)
++. +++|+++|
T Consensus 510 ~l~-~~rT~iiI 520 (567)
T COG1132 510 KLL-KGRTTLII 520 (567)
T ss_pred HHh-cCCEEEEE
Confidence 665 45565544
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.76 E-value=5.8e-18 Score=164.10 Aligned_cols=139 Identities=18% Similarity=0.107 Sum_probs=90.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC---ccCCCCCCcccChhhhhh----------------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENFDYPVAMDIRELIS---------------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp---~~~~~~y~~~~~i~~~i~---------------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.+... ..+...+.+..++.+.+.
T Consensus 35 ~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 114 (556)
T PRK11819 35 KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAE 114 (556)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999999998853210 011111222334444432
Q ss_pred ------------------------------HHHHHHHhCCCCCCCchhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeC
Q 025642 59 ------------------------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDC 106 (250)
Q Consensus 59 ------------------------------~~~vm~~~~L~~~g~~~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDE 106 (250)
+.++++.+|+... .. ....+. +++++.||++++. +|+++|+||
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~--~~~~LSgGqkqrv~la~al~~--~p~vlLLDE 189 (556)
T PRK11819 115 PDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW-DA--KVTKLSGGERRRVALCRLLLE--KPDMLLLDE 189 (556)
T ss_pred CchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcc-cC--chhhcCHHHHHHHHHHHHHhC--CCCEEEEcC
Confidence 2223444555321 11 111222 2344999999999 999999999
Q ss_pred CCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhH
Q 025642 107 PGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 107 Pt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
||+ ||+.+...+. ++++++ +.+++++ +|.......+++.++
T Consensus 190 Pt~~LD~~~~~~l~-~~L~~~---~~tviii----sHd~~~~~~~~d~i~ 231 (556)
T PRK11819 190 PTNHLDAESVAWLE-QFLHDY---PGTVVAV----THDRYFLDNVAGWIL 231 (556)
T ss_pred CCCcCChHHHHHHH-HHHHhC---CCeEEEE----eCCHHHHHhhcCeEE
Confidence 999 9999998877 777765 2466555 366655555555443
No 312
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.3e-18 Score=161.55 Aligned_cols=130 Identities=21% Similarity=0.253 Sum_probs=95.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-C-----cccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~-----~~~~i~~~i~----------~~ 60 (250)
-++++|++|||||||++.++|+.+|++|+|.++|.+... +++.| + ..-++||++. +.
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~ 428 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEII 428 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHH
Confidence 378999999999999999999999999999999877532 23444 2 2346888875 55
Q ss_pred HHHHHhCCCC----CCCchhhhh------hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 61 DVMEELGLGP----NGGLIYCME------HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 61 ~vm~~~~L~~----~g~~~~~~~------~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
+++++.|+.+ ++|+-.... ...+.+++++||++.. +++++||||||+ ||..+...+. +.+.++.+.
T Consensus 429 ~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~--~~~l~llDEpTA~LD~etE~~i~-~~l~~l~~~ 505 (559)
T COG4988 429 AALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS--PASLLLLDEPTAHLDAETEQIIL-QALQELAKQ 505 (559)
T ss_pred HHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC--CCCEEEecCCccCCCHhHHHHHH-HHHHHHHhC
Confidence 5666655432 122211111 1223456999999999 999999999999 9999999988 888888664
Q ss_pred CCeEEEEE
Q 025642 130 NFNVCAVY 137 (250)
Q Consensus 130 ~~~vi~v~ 137 (250)
++++++.
T Consensus 506 -ktvl~it 512 (559)
T COG4988 506 -KTVLVIT 512 (559)
T ss_pred -CeEEEEE
Confidence 6776653
No 313
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.76 E-value=1.7e-18 Score=158.18 Aligned_cols=144 Identities=21% Similarity=0.285 Sum_probs=110.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CC------CCC---CcccChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------EN------FDY---PVAMDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~------~~y---~~~~~i~~~i~------ 58 (250)
.+||+|.+|||||||-.++.+++++. |.|.+.|.+... .. -+| .|.++|.+.|.
T Consensus 315 TlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh 393 (534)
T COG4172 315 TLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVH 393 (534)
T ss_pred eEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhc
Confidence 47899999999999999999999886 999999987632 11 122 34556666665
Q ss_pred ------------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
+.++|++.||.|+.-..|..++.. +.++.+|||++.. +|+++++||||+ ||...+.+++ ++++
T Consensus 394 ~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliL--kP~~i~LDEPTSALD~SVQaQvv-~LLr 470 (534)
T COG4172 394 EPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALIL--KPELILLDEPTSALDRSVQAQVL-DLLR 470 (534)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhc--CCcEEEecCCchHhhHHHHHHHH-HHHH
Confidence 778999999999876666655554 3456999999999 999999999999 9999999999 9999
Q ss_pred HHHhC-CCeEEEEEeccccccccHHHHHHhhH
Q 025642 125 HLKSR-NFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 125 ~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
.|+++ |.+- ++-||.+.-....+..++
T Consensus 471 ~LQ~k~~LsY----LFISHDL~VvrAl~~~vi 498 (534)
T COG4172 471 DLQQKHGLSY----LFISHDLAVVRALCHRVI 498 (534)
T ss_pred HHHHHhCCeE----EEEeccHHHHHHhhceEE
Confidence 99854 6554 444677764444444333
No 314
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.76 E-value=3.7e-18 Score=152.49 Aligned_cols=130 Identities=18% Similarity=0.147 Sum_probs=82.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC-ccCCCCCCcccChhhhhh---------HHHHHHHhCCCC---
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS---------LEDVMEELGLGP--- 70 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp-~~~~~~y~~~~~i~~~i~---------~~~vm~~~~L~~--- 70 (250)
+++|+||||||||||+++|+|.++|++|+|.+.|.-- ..+.....+ .++++.+. +.+.++.+++.+
T Consensus 65 ~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~ 143 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDIT 143 (282)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHHH
Confidence 5899999999999999999999999999999865210 001111111 24444432 123333333321
Q ss_pred ---CCC--ch--hhhhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 71 ---NGG--LI--YCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 71 ---~g~--~~--~~~~~-~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
.+. .+ ...+. ..+++++.||++++. +|+++|+|||++ +|+.++..+...+++.++ .+.+++++.
T Consensus 144 ~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiis 216 (282)
T cd03291 144 KFPEKDNTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVT 216 (282)
T ss_pred hccccccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEe
Confidence 000 00 00011 123344999999999 999999999999 999999888844556664 366776553
No 315
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.76 E-value=5.7e-18 Score=166.88 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=108.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-C------cccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P------VAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-~------~~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|.++|++|++.++|.++.. ..+.| + +..++.+++.
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~ 115 (648)
T PRK10535 36 MVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG 115 (648)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcC
Confidence 579999999999999999999999999999999876421 22333 1 2234444332
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.++++.+|+.+........-...+.+++.||++++. +|+++|+|||+. +|+.+++.+. ++++++++
T Consensus 116 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~--~P~lLllDEP~~gLD~~s~~~l~-~ll~~l~~ 192 (648)
T PRK10535 116 LERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN--GGQVILADEPTGALDSHSGEEVM-AILHQLRD 192 (648)
T ss_pred CCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHh
Confidence 4556777777653211100011112334999999999 999999999999 9999999988 89999876
Q ss_pred CCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCe
Q 025642 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~ 168 (250)
++.+++++. |....+ ..++.++....+.+....+.
T Consensus 193 ~g~tilivs----H~~~~~-~~~d~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 193 RGHTVIIVT----HDPQVA-AQAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred cCCEEEEEC----CCHHHH-HhCCEEEEEECCEEEeecCc
Confidence 788876653 555544 34666666655555544443
No 316
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.76 E-value=5e-18 Score=164.44 Aligned_cols=129 Identities=18% Similarity=0.125 Sum_probs=91.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-------cCCCCC-Cc-----ccChhhhhh-----------H
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PV-----AMDIRELIS-----------L 59 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-------~~~~~y-~~-----~~~i~~~i~-----------~ 59 (250)
.++|+|+||||||||+++|+|+++|++|+|.++|.+.. .+.+.| +| +-+++++++ +
T Consensus 360 ~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i 439 (571)
T TIGR02203 360 TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEI 439 (571)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHH
Confidence 47899999999999999999999999999999997642 133555 33 235666654 3
Q ss_pred HHHHHHhCCCC------CCCchhh-----hh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 60 EDVMEELGLGP------NGGLIYC-----ME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 60 ~~vm~~~~L~~------~g~~~~~-----~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
.++++..|+.+ +| +-.. .. ...++++.+|||++.. +|+++++||||+ +|..+.+.++ +.++++
T Consensus 440 ~~~l~~~~l~~~i~~lp~g-ldt~i~~~g~~LSgGqrQRiaLARall~--~~~illLDEpts~LD~~~~~~i~-~~L~~~ 515 (571)
T TIGR02203 440 ERALAAAYAQDFVDKLPLG-LDTPIGENGVLLSGGQRQRLAIARALLK--DAPILILDEATSALDNESERLVQ-AALERL 515 (571)
T ss_pred HHHHHHcChHHHHHhCcCc-ccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHH
Confidence 33444444421 11 0000 01 2224456999999999 999999999999 9999999998 777776
Q ss_pred HhCCCeEEEEE
Q 025642 127 KSRNFNVCAVY 137 (250)
Q Consensus 127 ~~~~~~vi~v~ 137 (250)
. .++++++|.
T Consensus 516 ~-~~~tiIiit 525 (571)
T TIGR02203 516 M-QGRTTLVIA 525 (571)
T ss_pred h-CCCEEEEEe
Confidence 4 467776663
No 317
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.76 E-value=6.8e-18 Score=163.44 Aligned_cols=139 Identities=17% Similarity=0.073 Sum_probs=88.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC-C--ccCCCCCCcccChhhhhhH---------------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELISL--------------------- 59 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-p--~~~~~~y~~~~~i~~~i~~--------------------- 59 (250)
+++|+||||||||||+++|+|.++|++|+|.+.+.. . ..+.....+..++++++..
T Consensus 33 ~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
T TIGR03719 33 KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAE 112 (552)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999999885421 0 0111111223445444421
Q ss_pred -------------------------------HHHHHHhCCCCCCCchhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeC
Q 025642 60 -------------------------------EDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDC 106 (250)
Q Consensus 60 -------------------------------~~vm~~~~L~~~g~~~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDE 106 (250)
.++++.+|+.... . ....+. ++++++||++++. +|+++|+||
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~--~~~~LSgGqkqrv~la~al~~--~p~lLLLDE 187 (552)
T TIGR03719 113 PDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWD-A--DVTKLSGGERRRVALCRLLLS--KPDMLLLDE 187 (552)
T ss_pred CchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCccc-C--chhhcCHHHHHHHHHHHHHhc--CCCEEEEcC
Confidence 1233344442210 0 011121 2334999999999 999999999
Q ss_pred CCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhH
Q 025642 107 PGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 107 Pt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
||+ ||+.++..+. ++++++ +.++++| +|.......+++.++
T Consensus 188 Pt~~LD~~~~~~l~-~~L~~~---~~tvIii----sHd~~~~~~~~d~v~ 229 (552)
T TIGR03719 188 PTNHLDAESVAWLE-QHLQEY---PGTVVAV----THDRYFLDNVAGWIL 229 (552)
T ss_pred CCCCCChHHHHHHH-HHHHhC---CCeEEEE----eCCHHHHHhhcCeEE
Confidence 999 9999998877 776654 3466555 355554445544433
No 318
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3.2e-18 Score=168.36 Aligned_cols=144 Identities=13% Similarity=0.103 Sum_probs=93.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEee-cCCc--cCC-CC-CCcccChhhhh----------hHHHHHHHhCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA--AEN-FD-YPVAMDIRELI----------SLEDVMEELGL 68 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~-~dp~--~~~-~~-y~~~~~i~~~i----------~~~~vm~~~~L 68 (250)
+++|+||||||||||+++|+|.++|++|+|.+.+ ...+ .+. .. ..+..++.+.+ .+.++++.+++
T Consensus 340 ~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l 419 (638)
T PRK10636 340 RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGF 419 (638)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCC
Confidence 5899999999999999999999999999998852 1110 010 00 11112222221 15677888888
Q ss_pred CCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccc
Q 025642 69 GPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD 146 (250)
Q Consensus 69 ~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d 146 (250)
.+........... .++.++.||++++. +|++||+||||+ ||+.+...+. ++++++ .| +|++|. |....
T Consensus 420 ~~~~~~~~~~~LSgGekqRl~La~~l~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~--~g-tvi~vS----Hd~~~ 489 (638)
T PRK10636 420 QGDKVTEETRRFSGGEKARLVLALIVWQ--RPNLLLLDEPTNHLDLDMRQALT-EALIDF--EG-ALVVVS----HDRHL 489 (638)
T ss_pred ChhHhcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc--CC-eEEEEe----CCHHH
Confidence 5321000011111 12334999999999 999999999999 9999998888 777776 24 766553 55544
Q ss_pred HHHHHHhhHHh
Q 025642 147 VTKFISGCMAS 157 (250)
Q Consensus 147 ~~~~~s~~l~~ 157 (250)
...+++.++..
T Consensus 490 ~~~~~d~i~~l 500 (638)
T PRK10636 490 LRSTTDDLYLV 500 (638)
T ss_pred HHHhCCEEEEE
Confidence 45555554443
No 319
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.75 E-value=5.9e-18 Score=164.05 Aligned_cols=141 Identities=15% Similarity=0.106 Sum_probs=94.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC----ccCCC-CCCcccChhhhhh--------------HHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----AAENF-DYPVAMDIRELIS--------------LEDVME 64 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp----~~~~~-~y~~~~~i~~~i~--------------~~~vm~ 64 (250)
+++|+||||||||||+++|+|+++|++|+|.+.+ +. ..+.. .+.+..++.+.+. ..++++
T Consensus 352 ~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~ 430 (556)
T PRK11819 352 IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVG 430 (556)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHH
Confidence 5899999999999999999999999999998832 21 01111 1223344554432 345677
Q ss_pred HhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025642 65 ELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (250)
Q Consensus 65 ~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~ 142 (250)
.+++.+........+... +++++.||++++. +|+++|+||||+ ||+.++..+. ++++++. + +++++ +|
T Consensus 431 ~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-tvi~v----tH 500 (556)
T PRK11819 431 RFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQ--GGNVLLLDEPTNDLDVETLRALE-EALLEFP--G-CAVVI----SH 500 (556)
T ss_pred hCCCChhHhcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhCC--C-eEEEE----EC
Confidence 888853110001112222 2334899999999 999999999999 9999999988 7777762 3 55544 47
Q ss_pred ccccHHHHHHhhH
Q 025642 143 FITDVTKFISGCM 155 (250)
Q Consensus 143 ~~~d~~~~~s~~l 155 (250)
.......+++.++
T Consensus 501 d~~~~~~~~d~i~ 513 (556)
T PRK11819 501 DRWFLDRIATHIL 513 (556)
T ss_pred CHHHHHHhCCEEE
Confidence 6665556655433
No 320
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.75 E-value=5.9e-18 Score=165.90 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=113.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC---CceEEEeecCCcc----CCCCC-------CcccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~i~i~~~dp~~----~~~~y-------~~~~~i~~~i~----------- 58 (250)
.++|+||||||||||+++|+|..++. +|+|.++|.+... +.++| .+..+++|.+.
T Consensus 53 ~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 132 (617)
T TIGR00955 53 LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRV 132 (617)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCC
Confidence 57899999999999999999998874 7999999976421 22344 23456777653
Q ss_pred --------HHHHHHHhCCCCCCCchhhh-----h-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 59 --------LEDVMEELGLGPNGGLIYCM-----E-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~-----~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
++++++.+|+.+-......- . ...++.++.||++|.. +|+++++||||+ ||..+...++ +.+
T Consensus 133 ~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~--~p~vlllDEPtsgLD~~~~~~l~-~~L 209 (617)
T TIGR00955 133 TKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT--DPPLLFCDEPTSGLDSFMAYSVV-QVL 209 (617)
T ss_pred CHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc--CCCEEEeeCCCcchhHHHHHHHH-HHH
Confidence 56788888886532111110 0 1112344999999999 999999999999 9999999999 888
Q ss_pred HHHHhCCCeEEEEEeccccccc-cHHHHHHhhHHhhhhHhHhcCCe
Q 025642 124 DHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPH 168 (250)
Q Consensus 124 ~~l~~~~~~vi~v~l~d~~~~~-d~~~~~s~~l~~~~~~~~~~~p~ 168 (250)
+++++.|.+++++. |... +....++.+++...+.+....|.
T Consensus 210 ~~l~~~g~tvi~~~----hq~~~~i~~~~D~i~ll~~G~~v~~G~~ 251 (617)
T TIGR00955 210 KGLAQKGKTIICTI----HQPSSELFELFDKIILMAEGRVAYLGSP 251 (617)
T ss_pred HHHHhCCCEEEEEe----CCCCHHHHHHhceEEEeeCCeEEEECCH
Confidence 88887788876553 5553 45667777766666655544443
No 321
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.75 E-value=7.4e-18 Score=163.48 Aligned_cols=129 Identities=17% Similarity=0.207 Sum_probs=90.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~----------~~ 60 (250)
.++|+||||||||||++.|+|+++|.+|+|.++|.+... +.+.| +|+ -++++++. +.
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~ 447 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVE 447 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHH
Confidence 478999999999999999999999999999999866421 24555 332 35666665 33
Q ss_pred HHHHHhCCC------CCCCchhh-----hhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 61 DVMEELGLG------PNGGLIYC-----MEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 61 ~vm~~~~L~------~~g~~~~~-----~~~-~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
++++..++. |+| .... .+. ..+.++..+||++.. +|+++|+||||+ +|..+.+.++ +.++.+.
T Consensus 448 ~~l~~~~l~~~i~~l~~g-l~t~i~~~g~~LSgGq~Qrl~laRal~~--~~~ililDEpts~lD~~~~~~i~-~~l~~~~ 523 (576)
T TIGR02204 448 AAARAAHAHEFISALPEG-YDTYLGERGVTLSGGQRQRIAIARAILK--DAPILLLDEATSALDAESEQLVQ-QALETLM 523 (576)
T ss_pred HHHHHcCcHHHHHhCCCC-CCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCeEEEeCcccccCHHHHHHHH-HHHHHHh
Confidence 344444432 111 0000 011 124456999999999 999999999999 9999998888 7777764
Q ss_pred hCCCeEEEEE
Q 025642 128 SRNFNVCAVY 137 (250)
Q Consensus 128 ~~~~~vi~v~ 137 (250)
.+++++++.
T Consensus 524 -~~~t~Iiit 532 (576)
T TIGR02204 524 -KGRTTLIIA 532 (576)
T ss_pred -CCCEEEEEe
Confidence 367776653
No 322
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.75 E-value=1.8e-17 Score=160.63 Aligned_cols=132 Identities=14% Similarity=0.084 Sum_probs=94.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cccc-----Chhhhh-------hHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELI-------SLEDVM 63 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~~-----~i~~~i-------~~~~vm 63 (250)
.++|+||||||||||++.|+|+++|++|+|.++|.+... ..+.| +|+. +++++. .+.+++
T Consensus 370 ~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~ 449 (555)
T TIGR01194 370 IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYL 449 (555)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHH
Confidence 578999999999999999999999999999999977532 23444 3321 233322 145677
Q ss_pred HHhCCCCCC-----Cchhhhhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 64 EELGLGPNG-----GLIYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 64 ~~~~L~~~g-----~~~~~~~~-~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
+..++.+.- |.....+. ..++++.+|||++.. +|+++|+||||+ +|+.+.+.+.+.+++.++..++|++++
T Consensus 450 ~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiii 527 (555)
T TIGR01194 450 QRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLE--DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIII 527 (555)
T ss_pred HHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 888776421 11101111 124455999999999 999999999999 999999998855666665567887766
Q ss_pred E
Q 025642 137 Y 137 (250)
Q Consensus 137 ~ 137 (250)
.
T Consensus 528 s 528 (555)
T TIGR01194 528 S 528 (555)
T ss_pred e
Confidence 3
No 323
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.75 E-value=7.4e-18 Score=165.70 Aligned_cols=141 Identities=14% Similarity=0.179 Sum_probs=90.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc----cCCC-CCCcccChhhhhh--------------HHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENF-DYPVAMDIRELIS--------------LEDVME 64 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~----~~~~-~y~~~~~i~~~i~--------------~~~vm~ 64 (250)
+++|+||||||||||+++|+|.++|++|+|.+ |.+.. .+.. .+.+..++.+.+. +.++++
T Consensus 347 ~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~ 425 (635)
T PRK11147 347 KIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQ 425 (635)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHH
Confidence 58999999999999999999999999999988 43210 1111 1223334444432 344566
Q ss_pred HhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025642 65 ELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (250)
Q Consensus 65 ~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~ 142 (250)
.+++.+........... .++++++||++++. +|++||+||||+ ||+.+...+. ++++++ +.+|++|. |
T Consensus 426 ~~~l~~~~~~~~~~~LSgGekqRl~la~al~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~vS----H 495 (635)
T PRK11147 426 DFLFHPKRAMTPVKALSGGERNRLLLARLFLK--PSNLLILDEPTNDLDVETLELLE-ELLDSY---QGTVLLVS----H 495 (635)
T ss_pred hcCCCHHHHhChhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhC---CCeEEEEE----C
Confidence 67764211000001111 12334999999999 999999999999 9999987766 666654 34666553 4
Q ss_pred ccccHHHHHHhhH
Q 025642 143 FITDVTKFISGCM 155 (250)
Q Consensus 143 ~~~d~~~~~s~~l 155 (250)
.......+++.++
T Consensus 496 d~~~~~~~~d~i~ 508 (635)
T PRK11147 496 DRQFVDNTVTECW 508 (635)
T ss_pred CHHHHHHhcCEEE
Confidence 4444444544433
No 324
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.75 E-value=7.5e-18 Score=162.04 Aligned_cols=129 Identities=24% Similarity=0.307 Sum_probs=92.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~ 60 (250)
.++|+||||||||||++.|+|+++|++|+|.++|.+... +.+.| +| +-+++|++. +.
T Consensus 350 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~ 429 (529)
T TIGR02857 350 RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIR 429 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHH
Confidence 478999999999999999999999999999999987532 23444 22 236777765 33
Q ss_pred HHHHHhCCCC------CCCchhhh----hhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 61 DVMEELGLGP------NGGLIYCM----EHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 61 ~vm~~~~L~~------~g~~~~~~----~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
++++..++.+ +| .-... ..+ .++++..|||++.. +|+++|+||||+ +|+.+.+.+. +.++++.
T Consensus 430 ~a~~~~~l~~~i~~lp~G-ldt~v~e~g~~LSgGq~qri~laRal~~--~~~ililDE~ts~lD~~~~~~i~-~~l~~~~ 505 (529)
T TIGR02857 430 RALERAGLDEFVAALPQG-LDTLIGEGGAGLSGGQAQRLALARAFLR--DAPLLLLDEPTAHLDAETEALVT-EALRALA 505 (529)
T ss_pred HHHHHcCcHHHHHhCccc-ccchhccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHhc
Confidence 4455544431 11 00000 111 23456999999999 999999999999 9999999988 7777764
Q ss_pred hCCCeEEEEE
Q 025642 128 SRNFNVCAVY 137 (250)
Q Consensus 128 ~~~~~vi~v~ 137 (250)
.++|+++|.
T Consensus 506 -~~~t~i~it 514 (529)
T TIGR02857 506 -QGRTVLLVT 514 (529)
T ss_pred -CCCEEEEEe
Confidence 467776653
No 325
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=9.9e-18 Score=162.82 Aligned_cols=128 Identities=18% Similarity=0.181 Sum_probs=90.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~ 60 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| +| .-++++++. +.
T Consensus 343 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 422 (569)
T PRK10789 343 MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIE 422 (569)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHH
Confidence 478999999999999999999999999999999876521 23344 22 225666654 33
Q ss_pred HHHHHhCCC------CCCCchhh-----hh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 61 DVMEELGLG------PNGGLIYC-----ME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 61 ~vm~~~~L~------~~g~~~~~-----~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
++++..++. |.| .-.. .+ ...++++..|||++.. +|+++|+||||+ +|+.+...+. +.++++.
T Consensus 423 ~~~~~~~l~~~i~~lp~g-l~t~~~~~g~~LSgGq~qRi~lARall~--~~~illlDEpts~LD~~~~~~i~-~~l~~~~ 498 (569)
T PRK10789 423 HVARLASVHDDILRLPQG-YDTEVGERGVMLSGGQKQRISIARALLL--NAEILILDDALSAVDGRTEHQIL-HNLRQWG 498 (569)
T ss_pred HHHHHcCCHHHHHhCcCc-ccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HHHHHHh
Confidence 344444432 111 0000 01 1123455999999999 999999999999 9999999988 7777764
Q ss_pred hCCCeEEEE
Q 025642 128 SRNFNVCAV 136 (250)
Q Consensus 128 ~~~~~vi~v 136 (250)
++.|++++
T Consensus 499 -~~~tii~i 506 (569)
T PRK10789 499 -EGRTVIIS 506 (569)
T ss_pred -CCCEEEEE
Confidence 47777655
No 326
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.75 E-value=2e-18 Score=171.77 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=88.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~ 60 (250)
.++|+|||||||||+++.|.|+++|++|+|.++|.+... +.+.| +| +-+++|++. +.
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~ 588 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIM 588 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHH
Confidence 478999999999999999999999999999999977521 23444 33 235777765 33
Q ss_pred HHHHHhCCC---------------CCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 61 DVMEELGLG---------------PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 61 ~vm~~~~L~---------------~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
++++..++. +.|.. -...++++.+|||++.. +|+++|+||||+ +|..+.+.+. + .
T Consensus 589 ~al~~a~l~~~i~~lp~GldT~ige~G~~----LSGGQkQRlalARALl~--~p~ILILDEpTSaLD~~te~~i~-~-~- 659 (711)
T TIGR00958 589 AAAKAANAHDFIMEFPNGYDTEVGEKGSQ----LSGGQKQRIAIARALVR--KPRVLILDEATSALDAECEQLLQ-E-S- 659 (711)
T ss_pred HHHHHcCCHHHHHhCCCccCCcccCCCCc----CCHHHHHHHHHHHHHhc--CCCEEEEEccccccCHHHHHHHH-H-h-
Confidence 344444432 12110 11234556999999999 999999999999 9999987777 4 1
Q ss_pred HHHhCCCeEEEEE
Q 025642 125 HLKSRNFNVCAVY 137 (250)
Q Consensus 125 ~l~~~~~~vi~v~ 137 (250)
....++|+++|.
T Consensus 660 -~~~~~~TvIiIt 671 (711)
T TIGR00958 660 -RSRASRTVLLIA 671 (711)
T ss_pred -hccCCCeEEEEe
Confidence 123467876663
No 327
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.75 E-value=3.8e-18 Score=166.26 Aligned_cols=130 Identities=21% Similarity=0.226 Sum_probs=88.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~ 60 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| +| +-++++++. +.
T Consensus 363 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 442 (585)
T TIGR01192 363 TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVY 442 (585)
T ss_pred EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHH
Confidence 478999999999999999999999999999999876421 23333 22 235666654 12
Q ss_pred HHHHHhCCC------CCC-----CchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 61 DVMEELGLG------PNG-----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 61 ~vm~~~~L~------~~g-----~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
++++..++. |.| +.....-...++++..|||++.. +|+++|+||||+ +|..+.+.+. +.++++.
T Consensus 443 ~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~--~p~ililDEpts~LD~~~~~~i~-~~l~~~~- 518 (585)
T TIGR01192 443 EAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK--NAPILVLDEATSALDVETEARVK-NAIDALR- 518 (585)
T ss_pred HHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHHh-
Confidence 222222221 111 00000011224455999999999 999999999999 9999999988 7777774
Q ss_pred CCCeEEEEE
Q 025642 129 RNFNVCAVY 137 (250)
Q Consensus 129 ~~~~vi~v~ 137 (250)
.+.+++++.
T Consensus 519 ~~~tvI~is 527 (585)
T TIGR01192 519 KNRTTFIIA 527 (585)
T ss_pred CCCEEEEEE
Confidence 477776653
No 328
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.75 E-value=5.7e-18 Score=171.76 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=119.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Cc------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~------~~~i~~~i~---------- 58 (250)
|.|+.|||||||||++++++|..+|++|++.+.|.+... +.++| || .++.||.+.
T Consensus 593 cfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~ 672 (885)
T KOG0059|consen 593 CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPR 672 (885)
T ss_pred eEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCCh
Confidence 678999999999999999999999999999998888632 45778 44 345566553
Q ss_pred ------HHHHHHHhCCCCCCCchhhhhhhhhhH-HHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025642 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (250)
Q Consensus 59 ------~~~vm~~~~L~~~g~~~~~~~~~~~~l-s~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~ 130 (250)
++..++.++|.+.+... .-.+..++. +..+|.++.. +|+++++|||++ +||.+++.++ +++++++++|
T Consensus 673 ~di~~~v~~ll~~~~L~~~~~~~-~~~ySgG~kRkLs~aialig--~p~vi~LDEPstGmDP~arr~lW-~ii~~~~k~g 748 (885)
T KOG0059|consen 673 SDIGSAIEKLLRLVGLGPYANKQ-VRTYSGGNKRRLSFAIALIG--DPSVILLDEPSTGLDPKARRHLW-DIIARLRKNG 748 (885)
T ss_pred hHHHHHHHHHHHHcCChhhhccc-hhhCCCcchhhHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-HHHHHHHhcC
Confidence 67778888988764221 111222222 2778888888 999999999999 9999999999 9999998877
Q ss_pred CeEEEEEeccccccccHHHHHHhhHHhhhhHhHh-cCC
Q 025642 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL-ELP 167 (250)
Q Consensus 131 ~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~-~~p 167 (250)
+.++ +.+|.+++.+..|+++.....++++. +.|
T Consensus 749 ~aii----LTSHsMeE~EaLCtR~aImv~G~l~ciGs~ 782 (885)
T KOG0059|consen 749 KAII----LTSHSMEEAEALCTRTAIMVIGQLRCIGSP 782 (885)
T ss_pred CEEE----EEcCCHHHHHHHhhhhheeecCeeEEecCh
Confidence 6664 34699999999999887776666543 443
No 329
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.75 E-value=1.2e-17 Score=160.12 Aligned_cols=132 Identities=18% Similarity=0.186 Sum_probs=85.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeec-CC--ccCCCCCCcccChhhhhh----------------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DP--AAENFDYPVAMDIRELIS---------------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~-dp--~~~~~~y~~~~~i~~~i~---------------------- 58 (250)
.+||||+||+|||||+|+|+|...|++|+|...+- .. ..+..+.....++.+.+.
T Consensus 31 riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~ 110 (530)
T COG0488 31 RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLAD 110 (530)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhccc
Confidence 58999999999999999999999999999987541 11 011111111112222221
Q ss_pred ------------------------HHHHHHHhCCCCCCCchhhhhhhhh--hHHHHHHHHHhcCCCCCEEEEeCCCc-cC
Q 025642 59 ------------------------LEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IE 111 (250)
Q Consensus 59 ------------------------~~~vm~~~~L~~~g~~~~~~~~~~~--~ls~~la~aL~~~~~~~~lllDEPt~-LD 111 (250)
++.++..+|+.+.. ..+..+.. +.++.||++|.. +||+|+|||||+ ||
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~---~~~~~LSGG~r~Rv~LA~aL~~--~pDlLLLDEPTNHLD 185 (530)
T COG0488 111 PDDELLAELEALLEELDGWTLEARAEEALLGLGFPDED---RPVSSLSGGWRRRVALARALLE--EPDLLLLDEPTNHLD 185 (530)
T ss_pred chhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCccc---CchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCcccC
Confidence 23344445555431 11233332 334999999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 025642 112 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (250)
Q Consensus 112 ~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~ 145 (250)
..+...+- +.+... .| ++++|. ||-+++.
T Consensus 186 ~~~i~WLe-~~L~~~--~g-tviiVS-HDR~FLd 214 (530)
T COG0488 186 LESIEWLE-DYLKRY--PG-TVIVVS-HDRYFLD 214 (530)
T ss_pred HHHHHHHH-HHHHhC--CC-cEEEEe-CCHHHHH
Confidence 99985544 444432 35 777775 6766654
No 330
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.74 E-value=2.4e-17 Score=159.43 Aligned_cols=132 Identities=17% Similarity=0.113 Sum_probs=92.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cccc-----Chhhh---h---hHHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIREL---I---SLEDVME 64 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~~-----~i~~~---i---~~~~vm~ 64 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +|+. +++++ . .+.++++
T Consensus 351 ~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~ 430 (547)
T PRK10522 351 LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLE 430 (547)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHH
Confidence 479999999999999999999999999999999987532 23444 3322 23322 1 2556777
Q ss_pred HhCCCCCCCc----hhhhhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 65 ELGLGPNGGL----IYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 65 ~~~L~~~g~~----~~~~~~-~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+++++..-.. ....+. ..++++..|||++.. +|+++|+||||+ +|+.+...+.+.+.+.+++.+.|+++|.
T Consensus 431 ~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~it 507 (547)
T PRK10522 431 RLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE--ERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAIS 507 (547)
T ss_pred HcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 7777643100 000111 124456999999999 999999999999 9999999888444444444577876653
No 331
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2e-17 Score=162.78 Aligned_cols=143 Identities=13% Similarity=0.091 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC-----ccC------CCCC-Ccc------cCh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AAE------NFDY-PVA------MDI------------ 53 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp-----~~~------~~~y-~~~------~~i------------ 53 (250)
.++|+||||||||||+++|+|.++|++|+|.+.|... ... .+.| .+. ++.
T Consensus 29 ~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~ 108 (638)
T PRK10636 29 KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGH 108 (638)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHH
Confidence 5899999999999999999999999999999876421 000 0111 000 000
Q ss_pred -----hhh----------hhHHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHH
Q 025642 54 -----REL----------ISLEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (250)
Q Consensus 54 -----~~~----------i~~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~ 116 (250)
... -.++++++.+|+.+........+... .++++.||++|+. +|++|||||||+ ||+.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~--~P~lLLLDEPtn~LD~~~~~ 186 (638)
T PRK10636 109 AIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALIC--RSDLLLLDEPTNHLDLDAVI 186 (638)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCCCcCCHHHHH
Confidence 000 01455677778752110001111111 2334999999999 999999999999 9999997
Q ss_pred HHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 117 PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 117 ~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
.+. ++++++ +.+|++|. |.......+++.++.
T Consensus 187 ~L~-~~L~~~---~~tviivs----Hd~~~l~~~~d~i~~ 218 (638)
T PRK10636 187 WLE-KWLKSY---QGTLILIS----HDRDFLDPIVDKIIH 218 (638)
T ss_pred HHH-HHHHhC---CCeEEEEe----CCHHHHHHhcCEEEE
Confidence 766 665554 45776553 665555555554433
No 332
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.73 E-value=2.3e-17 Score=162.28 Aligned_cols=139 Identities=16% Similarity=0.141 Sum_probs=90.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC--------CccCCCCC-Cccc-----------------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--------PAAENFDY-PVAM----------------------- 51 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d--------p~~~~~~y-~~~~----------------------- 51 (250)
.++|+||||||||||+++|+|.++|++|+|.+.+.. +......+ .+..
T Consensus 31 ~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (635)
T PRK11147 31 RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVET 110 (635)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999999986521 10111111 0000
Q ss_pred -Chhhh--------------------hhHHHHHHHhCCCCCCCchhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCC
Q 025642 52 -DIREL--------------------ISLEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPG 108 (250)
Q Consensus 52 -~i~~~--------------------i~~~~vm~~~~L~~~g~~~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt 108 (250)
+..+. -.+.++++.+|+.++. . ...+. .+++++||++|+. +|++||+||||
T Consensus 111 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~---~-~~~LSgGekqRv~LAraL~~--~P~lLLLDEPt 184 (635)
T PRK11147 111 DPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDA---A-LSSLSGGWLRKAALGRALVS--NPDVLLLDEPT 184 (635)
T ss_pred CchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCC---c-hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCC
Confidence 00000 0145566777775321 1 12222 2344999999999 99999999999
Q ss_pred c-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 109 Q-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 109 ~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+ ||+.+...+. ++++++ +.+|++|. |.......+++.++.
T Consensus 185 ~~LD~~~~~~L~-~~L~~~---~~tvlivs----Hd~~~l~~~~d~i~~ 225 (635)
T PRK11147 185 NHLDIETIEWLE-GFLKTF---QGSIIFIS----HDRSFIRNMATRIVD 225 (635)
T ss_pred CccCHHHHHHHH-HHHHhC---CCEEEEEe----CCHHHHHHhcCeEEE
Confidence 9 9999998777 777665 34666553 655545555554443
No 333
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.73 E-value=7.6e-18 Score=157.40 Aligned_cols=126 Identities=24% Similarity=0.286 Sum_probs=96.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cccc-----Chhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~~-----~i~~~i~------------ 58 (250)
.++||||+|||||||.|.|.|..+|.+|.|.++|-|... ++++| ||++ +|.++|.
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIi 443 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVI 443 (580)
T ss_pred eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHH
Confidence 579999999999999999999999999999999977622 56888 6654 4667665
Q ss_pred -------HHHHHHHhC------CCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 -------LEDVMEELG------LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 -------~~~vm~~~~------L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
+.|++-++- +|+-|.. -.-.++++..+||++.. +|.++++|||-+ ||......+. +-+.
T Consensus 444 eAA~lAgvHelIl~lP~GYdT~iG~~G~~----LSgGQRQRIaLARAlYG--~P~lvVLDEPNsNLD~~GE~AL~-~Ai~ 516 (580)
T COG4618 444 EAARLAGVHELILRLPQGYDTRIGEGGAT----LSGGQRQRIALARALYG--DPFLVVLDEPNSNLDSEGEAALA-AAIL 516 (580)
T ss_pred HHHHHcChHHHHHhCcCCccCccCCCCCC----CCchHHHHHHHHHHHcC--CCcEEEecCCCCCcchhHHHHHH-HHHH
Confidence 334433321 2333211 12224566999999998 999999999999 9999999988 7778
Q ss_pred HHHhCCCeEEEE
Q 025642 125 HLKSRNFNVCAV 136 (250)
Q Consensus 125 ~l~~~~~~vi~v 136 (250)
+++++|.++++|
T Consensus 517 ~~k~rG~~vvvi 528 (580)
T COG4618 517 AAKARGGTVVVI 528 (580)
T ss_pred HHHHcCCEEEEE
Confidence 888778777655
No 334
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.73 E-value=6.8e-18 Score=133.85 Aligned_cols=104 Identities=26% Similarity=0.326 Sum_probs=74.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc------ccChhhhh---hHHHHHHHh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV------AMDIRELI---SLEDVMEEL 66 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~------~~~i~~~i---~~~~vm~~~ 66 (250)
+++|+||||||||||+++|+|..+|.+|.|.++|.+... ..+.| ++ ..++++.. .++++++.+
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~l~~l 92 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEEVLKKL 92 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHHHHHHT
T ss_pred EEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 579999999999999999999999999999999876633 22333 22 34455543 377788888
Q ss_pred CCCCCCCchh--hhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc
Q 025642 67 GLGPNGGLIY--CMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (250)
Q Consensus 67 ~L~~~g~~~~--~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~ 109 (250)
++........ ....+ .++++++||+++.. +|+++|+||||+
T Consensus 93 ~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~--~~~llllDEPt~ 137 (137)
T PF00005_consen 93 GLEDLLDRKIGQRASSLSGGEKQRLALARALLK--NPKLLLLDEPTN 137 (137)
T ss_dssp THGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT--TSSEEEEESTTT
T ss_pred ccccccccccccccchhhHHHHHHHHHHHHHHc--CCCEEEEeCCCC
Confidence 8755221111 00111 23344999999999 999999999996
No 335
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=3.6e-17 Score=159.98 Aligned_cols=152 Identities=20% Similarity=0.263 Sum_probs=108.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC---CCceEEEeecCCcc----CCCCC-------CcccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~---~~G~i~i~~~dp~~----~~~~y-------~~~~~i~~~i~----------- 58 (250)
+.+|+||+|||||||+++++|-... .+|+|.++|..+.. ...+| .+..+|+|.+.
T Consensus 58 l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~ 137 (613)
T KOG0061|consen 58 LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSL 137 (613)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCC
Confidence 5789999999999999999998864 78999999944322 11233 34567888765
Q ss_pred --------HHHHHHHhCCCCCCCchhh-h----hhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 --------LEDVMEELGLGPNGGLIYC-M----EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~-~----~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
++++++++|+..-...+.. . =...++.++.||..+.. +|.++++||||+ ||..+...++ ++++
T Consensus 138 ~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~--~P~iLflDEPTSGLDS~sA~~vv-~~Lk 214 (613)
T KOG0061|consen 138 SKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLT--DPSILFLDEPTSGLDSFSALQVV-QLLK 214 (613)
T ss_pred CHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHc--CCCEEEecCCCCCcchhhHHHHH-HHHH
Confidence 8889999998732100000 0 00113344999999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEE-EeccccccccHHHHHHhhHHhhhhHh
Q 025642 125 HLKSRNFNVCAV-YLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 125 ~l~~~~~~vi~v-~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
+++++|++|+++ | +--.+....++.+++...+..
T Consensus 215 ~lA~~grtVi~tIH----QPss~lf~lFD~l~lLs~G~~ 249 (613)
T KOG0061|consen 215 RLARSGRTVICTIH----QPSSELFELFDKLLLLSEGEV 249 (613)
T ss_pred HHHhCCCEEEEEEe----CCcHHHHHHHhHhhhhcCCcE
Confidence 999889887654 4 223344455666655554443
No 336
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.73 E-value=1.9e-17 Score=174.43 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=104.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC---CCCceEEEeecCCc---cCCCCC-Cc------ccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPA---AENFDY-PV------AMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~---~~~G~i~i~~~dp~---~~~~~y-~~------~~~i~~~i~------------ 58 (250)
.++|+||||||||||+++|+|..+ +++|+|.++|.+.. .+.++| +| ..+++|.+.
T Consensus 791 ~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~ 870 (1394)
T TIGR00956 791 LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVS 870 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCC
Confidence 589999999999999999999987 68899999997652 123444 22 345666553
Q ss_pred -------HHHHHHHhCCCCCCCchhh---hhh-hhhhHHHHHHHHHhcCCCCC-EEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025642 59 -------LEDVMEELGLGPNGGLIYC---MEH-LEDNLDDWLAEELDNYLDDD-YLVFDCPGQ-IELFTHVPVLRNFVDH 125 (250)
Q Consensus 59 -------~~~vm~~~~L~~~g~~~~~---~~~-~~~~ls~~la~aL~~~~~~~-~lllDEPt~-LD~~~~~~i~~~ll~~ 125 (250)
++++++.+++.+....... ... ..+++++.||++|+. +|+ ++++||||+ ||..+...++ +++++
T Consensus 871 ~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~--~P~~iLlLDEPTsgLD~~~~~~i~-~~L~~ 947 (1394)
T TIGR00956 871 KSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA--KPKLLLFLDEPTSGLDSQTAWSIC-KLMRK 947 (1394)
T ss_pred HHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc--CCCeEEEEcCCCCCCCHHHHHHHH-HHHHH
Confidence 3567788888653211100 011 123345999999999 997 999999999 9999999999 99999
Q ss_pred HHhCCCeEEEEEecccccccc-HHHHHHhhHHhh
Q 025642 126 LKSRNFNVCAVYLLDSQFITD-VTKFISGCMASL 158 (250)
Q Consensus 126 l~~~~~~vi~v~l~d~~~~~d-~~~~~s~~l~~~ 158 (250)
++++|.+|+++. |.... ....++.+++..
T Consensus 948 la~~g~tvI~t~----H~~~~~~~~~~D~vl~L~ 977 (1394)
T TIGR00956 948 LADHGQAILCTI----HQPSAILFEEFDRLLLLQ 977 (1394)
T ss_pred HHHcCCEEEEEe----cCCCHHHHHhcCEEEEEc
Confidence 987788876553 44432 123345554443
No 337
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.9e-17 Score=155.92 Aligned_cols=127 Identities=21% Similarity=0.229 Sum_probs=89.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cccc-----Chhhhhh----------HHH
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS----------LED 61 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~~-----~i~~~i~----------~~~ 61 (250)
++|+|+|||||||++|++.+++. .+|+|.++|+|... +.++| ||+- +|..++. +.+
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e 459 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVE 459 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHH
Confidence 78999999999999999999999 89999999998732 34566 4432 3433332 333
Q ss_pred HHHHhCCCC------CC-----CchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 62 VMEELGLGP------NG-----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 62 vm~~~~L~~------~g-----~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
+.+++|+-+ .| |..-++-.-.++|+++++|++.+ +|+++++||||+ ||..+.++++ +.+... ..
T Consensus 460 ~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK--da~Il~~DEaTS~LD~~TE~~i~-~~i~~~-~~ 535 (591)
T KOG0057|consen 460 ACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK--DAPILLLDEATSALDSETEREIL-DMIMDV-MS 535 (591)
T ss_pred HHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc--CCCeEEecCcccccchhhHHHHH-HHHHHh-cC
Confidence 344444422 11 11111222334566999999999 999999999999 9999999999 555543 34
Q ss_pred CCeEEEE
Q 025642 130 NFNVCAV 136 (250)
Q Consensus 130 ~~~vi~v 136 (250)
++|+++|
T Consensus 536 ~rTvI~I 542 (591)
T KOG0057|consen 536 GRTVIMI 542 (591)
T ss_pred CCeEEEE
Confidence 6776654
No 338
>PLN03140 ABC transporter G family member; Provisional
Probab=99.71 E-value=3.6e-17 Score=172.60 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=104.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--CCceEEEeecCCcc----CCCCC-------CcccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~i~i~~~dp~~----~~~~y-------~~~~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ..++| .+..+++|.+.
T Consensus 908 l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~ 987 (1470)
T PLN03140 908 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVS 987 (1470)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCC
Confidence 5899999999999999999998763 68999999876521 22334 22345666543
Q ss_pred -------HHHHHHHhCCCCCCCchhh----hh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025642 59 -------LEDVMEELGLGPNGGLIYC----ME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (250)
Q Consensus 59 -------~~~vm~~~~L~~~g~~~~~----~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~ 125 (250)
++++++.++|.+....... .. ...+++++.||++|+. +|+++++||||+ ||..+...++ +++++
T Consensus 988 ~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~--~P~lL~LDEPTsgLD~~~a~~v~-~~L~~ 1064 (1470)
T PLN03140 988 KEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVA--NPSIIFMDEPTSGLDARAAAIVM-RTVRN 1064 (1470)
T ss_pred HHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 4567888888653211100 01 1123445999999999 999999999999 9999999999 89999
Q ss_pred HHhCCCeEEEEEeccccccc-cHHHHHHhhHHhh
Q 025642 126 LKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASL 158 (250)
Q Consensus 126 l~~~~~~vi~v~l~d~~~~~-d~~~~~s~~l~~~ 158 (250)
+++.|.+|+++. |... +....++.+++..
T Consensus 1065 l~~~g~tVI~t~----Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140 1065 TVDTGRTVVCTI----HQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred HHHCCCEEEEEe----CCCCHHHHHhCCEEEEEc
Confidence 987788876553 5444 2344555555544
No 339
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.71 E-value=5.9e-17 Score=134.69 Aligned_cols=156 Identities=18% Similarity=0.204 Sum_probs=109.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCC-------C---------CCCcccChhhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN-------F---------DYPVAMDIRELIS--------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~-------~---------~y~~~~~i~~~i~--------- 58 (250)
.+++||.||||||||.|+++|.++|++|+|.+++....-.. + ++.|..+|...+.
T Consensus 41 TlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~ 120 (267)
T COG4167 41 TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDL 120 (267)
T ss_pred EEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccC
Confidence 47899999999999999999999999999999886542211 1 1112122222221
Q ss_pred --------HHHHHHHhCCCCCCCchhhh-hhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCM-EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~-~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.+-++.+||-|..+..|.. -...+++++++||||.. +|+++|.||.-. +|...+.++. ++.-+|++
T Consensus 121 ~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL--~P~iIIaDeAl~~LD~smrsQl~-NL~LeLQe 197 (267)
T COG4167 121 EPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALIL--RPKIIIADEALASLDMSMRSQLI-NLMLELQE 197 (267)
T ss_pred ChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhc--CCcEEEehhhhhhccHHHHHHHH-HHHHHHHH
Confidence 55677889998876554432 23345667999999999 999999999988 9999999999 88888875
Q ss_pred C-CCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeecCchhhhcch
Q 025642 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (250)
Q Consensus 129 ~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK~Dl~~~~ 181 (250)
+ |.+-+.|. +++ ++++.-.-.+-|+-..+.++..
T Consensus 198 k~GiSyiYV~----Qhl---------------G~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 198 KQGISYIYVT----QHI---------------GMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred HhCceEEEEe----chh---------------hHhhhhcccEEEEecCceeecC
Confidence 4 77665553 333 2333333455566666666544
No 340
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=1.4e-17 Score=139.43 Aligned_cols=134 Identities=19% Similarity=0.339 Sum_probs=93.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEee-cCCcc--------CCC----C---CCcccChhhhhh----------
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPAA--------ENF----D---YPVAMDIRELIS---------- 58 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~-~dp~~--------~~~----~---y~~~~~i~~~i~---------- 58 (250)
-+|||||||||||++..|+|--+|+.|+|++.| .|... ..+ . .+.+.++++++.
T Consensus 34 r~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~ 113 (249)
T COG4674 34 RVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVF 113 (249)
T ss_pred EEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchH
Confidence 579999999999999999999999999999998 55421 111 1 133456666654
Q ss_pred --------------HHHHHHHhCCCCCCCchhhhhhhhhhHHHHH--HHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025642 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWL--AEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (250)
Q Consensus 59 --------------~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~l--a~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ 121 (250)
++++++..||++....... .+...+..|+ +.-++. +|++|++|||.+ +--....+.. +
T Consensus 114 a~L~~r~~~~e~~ride~La~igL~~~~~~~A~--~LSHGqKQwLEIGMll~Q--~P~lLLlDEPvAGMTd~Et~~ta-e 188 (249)
T COG4674 114 ASLFARLRAEERRRIDELLATIGLGDERDRLAA--LLSHGQKQWLEIGMLLAQ--DPKLLLLDEPVAGMTDAETEKTA-E 188 (249)
T ss_pred HHhhhhcChhHHHHHHHHHHHcccchhhhhhhh--hhccchhhhhhhheeecc--CCcEEEecCccCCCcHHHHHHHH-H
Confidence 7788999999987532211 1111222555 444555 999999999999 7666666777 8
Q ss_pred HHHHHHhCCCeEEEEEeccccccc
Q 025642 122 FVDHLKSRNFNVCAVYLLDSQFIT 145 (250)
Q Consensus 122 ll~~l~~~~~~vi~v~l~d~~~~~ 145 (250)
+++.+++ +.+|++| -+|..++.
T Consensus 189 Ll~~la~-~hsilVV-EHDM~Fvr 210 (249)
T COG4674 189 LLKSLAG-KHSILVV-EHDMGFVR 210 (249)
T ss_pred HHHHHhc-CceEEEE-eccHHHHH
Confidence 9999964 4666555 35555543
No 341
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=3.2e-17 Score=134.50 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=93.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC---Ccc---cChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PVA---MDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y---~~~---~~i~~~i~------------ 58 (250)
.++|+||+|||||||+|+++.++.|++|.+++.|.+... +.++| .|. -+|.|++-
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr 110 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDR 110 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccCCCh
Confidence 368999999999999999999999999999999987532 22333 111 12333322
Q ss_pred --HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeE
Q 025642 59 --LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNV 133 (250)
Q Consensus 59 --~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~-~~~~~v 133 (250)
+.+.+++++++..--....-+.. .++++.+|+|.|.. .|++|++||||+ ||+.+.+.+- +++.++- .++..+
T Consensus 111 ~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~--~P~ILLLDE~TsALD~~nkr~ie-~mi~~~v~~q~vAv 187 (223)
T COG4619 111 AAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQF--MPKILLLDEITSALDESNKRNIE-EMIHRYVREQNVAV 187 (223)
T ss_pred HHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhc--CCceEEecCchhhcChhhHHHHH-HHHHHHhhhhceEE
Confidence 67788999988642100001111 12344899999998 999999999999 9999999988 7776665 556776
Q ss_pred EEEE
Q 025642 134 CAVY 137 (250)
Q Consensus 134 i~v~ 137 (250)
+-|.
T Consensus 188 ~WiT 191 (223)
T COG4619 188 LWIT 191 (223)
T ss_pred EEEe
Confidence 6554
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=99.70 E-value=2.9e-17 Score=163.12 Aligned_cols=138 Identities=14% Similarity=0.097 Sum_probs=89.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCC-Cc----ccChhh--------------hhhHHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PV----AMDIRE--------------LISLEDVME 64 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y-~~----~~~i~~--------------~i~~~~vm~ 64 (250)
+++|+||||||||||+++|+|+++|++|+|.+.+.. .++| ++ ..++.+ .-.+.++++
T Consensus 537 ~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~----~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~ 612 (718)
T PLN03073 537 RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV----RMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 612 (718)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce----eEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHH
Confidence 589999999999999999999999999999875321 1222 11 011110 012567788
Q ss_pred HhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025642 65 ELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (250)
Q Consensus 65 ~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~ 142 (250)
.+++.+........... .+++++.||++++. +|++||+||||+ ||+.+...+. +.+... .+ ++++|. |
T Consensus 613 ~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~--~p~lLLLDEPT~~LD~~s~~~l~-~~L~~~--~g-tvIivS----H 682 (718)
T PLN03073 613 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFK--KPHILLLDEPSNHLDLDAVEALI-QGLVLF--QG-GVLMVS----H 682 (718)
T ss_pred HCCCChHHhcCCccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc--CC-EEEEEE----C
Confidence 88886321000011111 23344999999999 999999999999 9999987766 444443 23 666553 6
Q ss_pred ccccHHHHHHhhH
Q 025642 143 FITDVTKFISGCM 155 (250)
Q Consensus 143 ~~~d~~~~~s~~l 155 (250)
.......+++.++
T Consensus 683 d~~~i~~~~drv~ 695 (718)
T PLN03073 683 DEHLISGSVDELW 695 (718)
T ss_pred CHHHHHHhCCEEE
Confidence 6554455544433
No 343
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.5e-16 Score=136.12 Aligned_cols=131 Identities=21% Similarity=0.299 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC--CCCCceEEEeecCCcc--------C----CCCCCccc---Chhhhhh-------
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------E----NFDYPVAM---DIRELIS------- 58 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~i~i~~~dp~~--------~----~~~y~~~~---~i~~~i~------- 58 (250)
-+++|+||||||||||.++|+|+- +.++|+|.++|.|... . .++||+.+ ++.+++.
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~ 110 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARR 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhh
Confidence 368999999999999999999985 6789999999988622 1 23444432 2333322
Q ss_pred ------------HHHHHHHhCCCCCCCchhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g~~~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
+++.++.+++.+.-..++.-+-+. ++.+..|+..++. +|++.|||||-+ ||..+-+.+. +-+
T Consensus 111 ~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l--ePkl~ILDE~DSGLDIdalk~V~-~~i 187 (251)
T COG0396 111 GARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL--EPKLAILDEPDSGLDIDALKIVA-EGI 187 (251)
T ss_pred ccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc--CCCEEEecCCCcCccHHHHHHHH-HHH
Confidence 566788888887211111111111 2233778888888 999999999999 9999998888 999
Q ss_pred HHHHhCCCeEEEE
Q 025642 124 DHLKSRNFNVCAV 136 (250)
Q Consensus 124 ~~l~~~~~~vi~v 136 (250)
+.+++.+.+++++
T Consensus 188 ~~lr~~~~~~liI 200 (251)
T COG0396 188 NALREEGRGVLII 200 (251)
T ss_pred HHHhcCCCeEEEE
Confidence 9998888887655
No 344
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=5.7e-17 Score=164.62 Aligned_cols=125 Identities=22% Similarity=0.235 Sum_probs=88.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccC-------CCCC---C---cccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDY---P---VAMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~-------~~~y---~---~~~~i~~~i~----------~~ 60 (250)
.++++||+||||||+++.|.+++.|++|+|.++|.|...- .++. . .+.+|+|+|. ++
T Consensus 381 ~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~ 460 (1228)
T KOG0055|consen 381 TVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIE 460 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHH
Confidence 5899999999999999999999999999999999886431 1222 1 1335666654 11
Q ss_pred ---------HHHHH----hC--CCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 61 ---------DVMEE----LG--LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 61 ---------~vm~~----~~--L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
+.+.. ++ .|+.|.+ -.-.++++++|||+|.. +|++|||||||+ ||+.+.+.+. +.++
T Consensus 461 ~a~k~ana~~fi~~lp~g~~T~vge~g~q----LSGGQKQRIAIARalv~--~P~ILLLDEaTSaLD~~se~~Vq-~ALd 533 (1228)
T KOG0055|consen 461 EAAKAANAHDFILKLPDGYDTLVGERGVQ----LSGGQKQRIAIARALVR--NPKILLLDEATSALDAESERVVQ-EALD 533 (1228)
T ss_pred HHHHHccHHHHHHhhHHhhcccccCCCCC----CChHHHHHHHHHHHHHh--CCCEEEecCcccccCHHHHHHHH-HHHH
Confidence 12211 11 2333322 12234567999999999 999999999999 9999998877 8888
Q ss_pred HHHhCCCeEEEE
Q 025642 125 HLKSRNFNVCAV 136 (250)
Q Consensus 125 ~l~~~~~~vi~v 136 (250)
+..+ |.|.++|
T Consensus 534 ~~~~-grTTivV 544 (1228)
T KOG0055|consen 534 KASK-GRTTIVV 544 (1228)
T ss_pred Hhhc-CCeEEEE
Confidence 8754 5554444
No 345
>PLN03232 ABC transporter C family member; Provisional
Probab=99.70 E-value=2.1e-17 Score=175.29 Aligned_cols=134 Identities=19% Similarity=0.209 Sum_probs=95.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh---------HHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LED 61 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~---------~~~ 61 (250)
.++|+||+|||||||+++|.|+++|++|+|.++|.|... +.+.| +|+ -++|+++. +.+
T Consensus 1264 kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~ 1343 (1495)
T PLN03232 1264 KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWE 1343 (1495)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHH
Confidence 379999999999999999999999999999999988632 33454 332 25777765 344
Q ss_pred HHHHhCCCC------CCCchhhh-----hh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 62 VMEELGLGP------NGGLIYCM-----EH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 62 vm~~~~L~~------~g~~~~~~-----~~-~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+++..++.+ .| +-... +. ..++++.+||||+.. +|+++||||||+ +|..+.+.+. +.+++..
T Consensus 1344 al~~a~l~~~I~~lp~G-Ldt~v~e~G~~LSgGQrQrlaLARALLr--~~~ILILDEATSaLD~~Te~~Iq-~~L~~~~- 1418 (1495)
T PLN03232 1344 ALERAHIKDVIDRNPFG-LDAEVSEGGENFSVGQRQLLSLARALLR--RSKILVLDEATASVDVRTDSLIQ-RTIREEF- 1418 (1495)
T ss_pred HHHHcCCHHHHHhCcCC-CCceecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-
Confidence 555544421 11 10000 11 123455899999999 999999999999 9999998877 7777653
Q ss_pred CCCeEEEEEecccccccc
Q 025642 129 RNFNVCAVYLLDSQFITD 146 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d 146 (250)
+++|+++| +|.+..
T Consensus 1419 ~~~TvI~I----AHRl~t 1432 (1495)
T PLN03232 1419 KSCTMLVI----AHRLNT 1432 (1495)
T ss_pred CCCEEEEE----eCCHHH
Confidence 46787766 366543
No 346
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.69 E-value=1.5e-16 Score=157.16 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=83.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC---ccCCCCCCcccChhhhhh-----------------HHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENFDYPVAMDIRELIS-----------------LEDVM 63 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp---~~~~~~y~~~~~i~~~i~-----------------~~~vm 63 (250)
.++|+||||||||||+++|+|+++|++|+|.+.+..- ..+....++ .++++++. +.+++
T Consensus 480 ~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l 558 (659)
T TIGR00954 480 HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL-GTLRDQIIYPDSSEDMKRRGLSDKDLEQIL 558 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCC-cCHHHHHhcCCChhhhhccCCCHHHHHHHH
Confidence 4799999999999999999999999999987753110 001111111 14444432 34567
Q ss_pred HHhCCCCCCCch--------hhhhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025642 64 EELGLGPNGGLI--------YCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (250)
Q Consensus 64 ~~~~L~~~g~~~--------~~~~~-~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~v 133 (250)
+.+++.+..... ..-+. ..+++++.|||++.. +|+++|+||||+ +|+.+...+. +.+++ .|.++
T Consensus 559 ~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~--~p~illLDEpts~LD~~~~~~l~-~~l~~---~~~tv 632 (659)
T TIGR00954 559 DNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYH--KPQFAILDECTSAVSVDVEGYMY-RLCRE---FGITL 632 (659)
T ss_pred HHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHH---cCCEE
Confidence 777775421000 00011 123455999999999 999999999999 9999987776 55543 47777
Q ss_pred EEEE
Q 025642 134 CAVY 137 (250)
Q Consensus 134 i~v~ 137 (250)
+++.
T Consensus 633 I~is 636 (659)
T TIGR00954 633 FSVS 636 (659)
T ss_pred EEEe
Confidence 6663
No 347
>PLN03130 ABC transporter C family member; Provisional
Probab=99.69 E-value=3.2e-17 Score=174.68 Aligned_cols=149 Identities=18% Similarity=0.186 Sum_probs=101.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh---------HHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LED 61 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~---------~~~ 61 (250)
.+||+||+|||||||+++|.|+++|++|+|.++|.|... +.+++ +|+ -++|+++. +.+
T Consensus 1267 kVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~ 1346 (1622)
T PLN03130 1267 KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWE 1346 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHH
Confidence 479999999999999999999999999999999988642 34555 443 25777765 344
Q ss_pred HHHHhCCCC------CCCchhhh-----hh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 62 VMEELGLGP------NGGLIYCM-----EH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 62 vm~~~~L~~------~g~~~~~~-----~~-~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+++..++.+ .| +-... +. ..++++.+|||||.. +|++|||||||+ +|..+.+.+. +.+++..
T Consensus 1347 Al~~a~l~~~I~~lp~G-Ldt~Vge~G~nLSgGQrQrlaLARALLr--~p~ILILDEATSaLD~~Te~~Iq-~~I~~~~- 1421 (1622)
T PLN03130 1347 SLERAHLKDVIRRNSLG-LDAEVSEAGENFSVGQRQLLSLARALLR--RSKILVLDEATAAVDVRTDALIQ-KTIREEF- 1421 (1622)
T ss_pred HHHHcCcHHHHHhCccc-cCccccCCCCCCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHC-
Confidence 455444321 11 10000 11 123455999999999 999999999999 9999998877 7777763
Q ss_pred CCCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
+++|+++| +|.+....+ ++.++..-.+.+
T Consensus 1422 ~~~TvI~I----AHRL~tI~~-~DrIlVLd~G~I 1450 (1622)
T PLN03130 1422 KSCTMLII----AHRLNTIID-CDRILVLDAGRV 1450 (1622)
T ss_pred CCCEEEEE----eCChHHHHh-CCEEEEEECCEE
Confidence 46787665 355544333 344444444443
No 348
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.69 E-value=1.6e-16 Score=168.05 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=97.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEe-ecCCc-------cCCCCC-Ccc-----cChhhhhhH----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLDPA-------AENFDY-PVA-----MDIRELISL---------- 59 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~-~~dp~-------~~~~~y-~~~-----~~i~~~i~~---------- 59 (250)
.++|+||||||||||+++|+|+++|++|+|.++ |.+.. .+.++| +|+ .++++++..
T Consensus 413 ~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~ 492 (1466)
T PTZ00265 413 TYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEA 492 (1466)
T ss_pred EEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccch
Confidence 579999999999999999999999999999995 45431 123454 222 245555432
Q ss_pred ---------------------------------------------------------HHHHHHhCCCC------CC----
Q 025642 60 ---------------------------------------------------------EDVMEELGLGP------NG---- 72 (250)
Q Consensus 60 ---------------------------------------------------------~~vm~~~~L~~------~g---- 72 (250)
.++++..++.. .|
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~ 572 (1466)
T PTZ00265 493 LSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETL 572 (1466)
T ss_pred hccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCce
Confidence 22223333211 10
Q ss_pred -CchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEEeccccccccHHH
Q 025642 73 -GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTK 149 (250)
Q Consensus 73 -~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~vi~v~l~d~~~~~d~~~ 149 (250)
+..-..-...++++++||||++. +|++|||||||+ ||+.+...+. +.++++++ .|.|++++. |..... +
T Consensus 573 vg~~g~~LSGGQkQRiaIARAll~--~P~ILlLDEpTSaLD~~se~~i~-~~L~~~~~~~g~TvIiIs----Hrls~i-~ 644 (1466)
T PTZ00265 573 VGSNASKLSGGQKQRISIARAIIR--NPKILILDEATSSLDNKSEYLVQ-KTINNLKGNENRITIIIA----HRLSTI-R 644 (1466)
T ss_pred eCCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhhcCCCEEEEEe----CCHHHH-H
Confidence 00000011123455999999999 999999999999 9999999988 88888865 478876653 555443 4
Q ss_pred HHHhhHHhhh
Q 025642 150 FISGCMASLS 159 (250)
Q Consensus 150 ~~s~~l~~~~ 159 (250)
.++.++....
T Consensus 645 ~aD~Iivl~~ 654 (1466)
T PTZ00265 645 YANTIFVLSN 654 (1466)
T ss_pred hCCEEEEEeC
Confidence 5555554433
No 349
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.68 E-value=1.8e-16 Score=167.10 Aligned_cols=151 Identities=13% Similarity=0.138 Sum_probs=103.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC----CCCCceEEEeecCCc------cCCCCC-C------cccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVNLDPA------AENFDY-P------VAMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l----~~~~G~i~i~~~dp~------~~~~~y-~------~~~~i~~~i~-------- 58 (250)
.++|+||||||||||+|+|+|.. +|.+|+|.++|.++. ...+.| + +..+++|.+.
T Consensus 89 ~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 168 (1394)
T TIGR00956 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTP 168 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCC
Confidence 57899999999999999999986 568999999997652 112344 2 2345555432
Q ss_pred ----------------HHHHHHHhCCCCCCCch----hhhhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHH
Q 025642 59 ----------------LEDVMEELGLGPNGGLI----YCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (250)
Q Consensus 59 ----------------~~~vm~~~~L~~~g~~~----~~~~~-~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~ 116 (250)
.+++++.+||.+..... +.... ..+++++.||++++. +|+++++||||+ ||+.+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~--~p~vlllDEPTsgLD~~~~~ 246 (1394)
T TIGR00956 169 QNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG--GAKIQCWDNATRGLDSATAL 246 (1394)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh--CCCEEEEeCCCCCcCHHHHH
Confidence 23467778886532110 00011 123345999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHhC-CCeEEEEEecccccc-ccHHHHHHhhHHhhhhH
Q 025642 117 PVLRNFVDHLKSR-NFNVCAVYLLDSQFI-TDVTKFISGCMASLSAM 161 (250)
Q Consensus 117 ~i~~~ll~~l~~~-~~~vi~v~l~d~~~~-~d~~~~~s~~l~~~~~~ 161 (250)
.++ +++++++++ |.+++++. |.. .+...+++.+++...+.
T Consensus 247 ~i~-~~L~~la~~~g~tvii~~----Hq~~~~i~~l~D~v~~L~~G~ 288 (1394)
T TIGR00956 247 EFI-RALKTSANILDTTPLVAI----YQCSQDAYELFDKVIVLYEGY 288 (1394)
T ss_pred HHH-HHHHHHHHhcCCEEEEEe----cCCCHHHHHhhceEEEEeCCe
Confidence 999 899999764 77876553 443 34455566665544443
No 350
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.9e-16 Score=149.01 Aligned_cols=136 Identities=20% Similarity=0.250 Sum_probs=93.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HHH
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LED 61 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~~ 61 (250)
++|+|++||||||+++.++|.+.|++|+|.+.|.+++. +.+.. +| +-++|+++. +.+
T Consensus 367 vAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~ 446 (573)
T COG4987 367 VAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWA 446 (573)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 68999999999999999999999999999999977633 12222 22 124555553 334
Q ss_pred HHHHhCCCCCC-----Cchhhh-----hhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 62 VMEELGLGPNG-----GLIYCM-----EHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 62 vm~~~~L~~~g-----~~~~~~-----~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
++++.||...- |+-..+ ... .+..+.+|||++.+ +.+++|+||||. ||+.+.++++..+.+++ +
T Consensus 447 aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~--dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~ 522 (573)
T COG4987 447 ALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH--DAPLWLLDEPTEGLDPITERQVLALLFEHA--E 522 (573)
T ss_pred HHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc--CCCeEEecCCcccCChhhHHHHHHHHHHHh--c
Confidence 45555543210 000001 111 12345999999999 999999999999 99999999994444444 3
Q ss_pred CCeEEEEEeccccccccHH
Q 025642 130 NFNVCAVYLLDSQFITDVT 148 (250)
Q Consensus 130 ~~~vi~v~l~d~~~~~d~~ 148 (250)
|+|+++|. |.....+
T Consensus 523 ~kTll~vT----HrL~~le 537 (573)
T COG4987 523 GKTLLMVT----HRLRGLE 537 (573)
T ss_pred CCeEEEEe----cccccHh
Confidence 78988774 6665433
No 351
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.68 E-value=2.3e-16 Score=166.87 Aligned_cols=126 Identities=19% Similarity=0.230 Sum_probs=93.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC------------------------------------------------------C
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET------------------------------------------------------V 29 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~------------------------------------------------------~ 29 (250)
.++|+||+||||||+++.|.|++.| +
T Consensus 1196 ~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1275 (1466)
T PTZ00265 1196 TTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKN 1275 (1466)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 5799999999999999999999998 6
Q ss_pred CceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HHHHHHHhCC---------------CCC
Q 025642 30 RRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LEDVMEELGL---------------GPN 71 (250)
Q Consensus 30 ~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~~vm~~~~L---------------~~~ 71 (250)
+|+|.++|.|... +.++| +| +-+|+|++. ++++++..++ |+.
T Consensus 1276 ~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~ 1355 (1466)
T PTZ00265 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPY 1355 (1466)
T ss_pred CCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCC
Confidence 9999999987632 34555 33 246787775 3334443332 222
Q ss_pred CCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeEEEE
Q 025642 72 GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAV 136 (250)
Q Consensus 72 g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~-~~~~~vi~v 136 (250)
|.. -.-.++++.+|||||+. +|++|||||||+ ||..+.+.+. +.++++. ..++|+++|
T Consensus 1356 G~~----LSGGQkQRIaIARALlr--~p~ILLLDEaTSaLD~~sE~~I~-~~L~~~~~~~~~TvIiI 1415 (1466)
T PTZ00265 1356 GKS----LSGGQKQRIAIARALLR--EPKILLLDEATSSLDSNSEKLIE-KTIVDIKDKADKTIITI 1415 (1466)
T ss_pred CCc----CCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhccCCCEEEEE
Confidence 211 12234566999999999 999999999999 9999998888 7777775 357787666
No 352
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.3e-16 Score=131.28 Aligned_cols=131 Identities=18% Similarity=0.250 Sum_probs=93.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC---------------ccCCCCC-CcccCh------hhhh----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---------------AAENFDY-PVAMDI------RELI---- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp---------------~~~~~~y-~~~~~i------~~~i---- 57 (250)
|+++=||+||||||++|++.+.+.|++|+|.+.-.+- ....++| .|.+.+ -|.+
T Consensus 39 CvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePl 118 (235)
T COG4778 39 CVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPL 118 (235)
T ss_pred EEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHH
Confidence 7889999999999999999999999999999854321 1123444 221110 0100
Q ss_pred ------------hHHHHHHHhCCCCCCCchhhhh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 58 ------------SLEDVMEELGLGPNGGLIYCME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 58 ------------~~~~vm~~~~L~~~g~~~~~~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
.+.+++.++++.+..=.....- .-.+++++.|||.++. +-++|++||||+ ||..+++.++ +++
T Consensus 119 l~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfiv--d~pILLLDEPTasLDa~Nr~vVv-eli 195 (235)
T COG4778 119 LARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIV--DYPILLLDEPTASLDATNRAVVV-ELI 195 (235)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhc--cCceEEecCCcccccccchHHHH-HHH
Confidence 1566777777765320000001 1123455999999998 999999999999 9999999999 999
Q ss_pred HHHHhCCCeEEEEE
Q 025642 124 DHLKSRNFNVCAVY 137 (250)
Q Consensus 124 ~~l~~~~~~vi~v~ 137 (250)
++-+..|..++.+|
T Consensus 196 ~e~Ka~GaAlvGIF 209 (235)
T COG4778 196 REAKARGAALVGIF 209 (235)
T ss_pred HHHHhcCceEEEee
Confidence 99888899999887
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=99.67 E-value=2.3e-16 Score=166.56 Aligned_cols=157 Identities=13% Similarity=0.129 Sum_probs=107.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC---CceEEEeecCCc----cCCCCC-C------cccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPA----AENFDY-P------VAMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~i~i~~~dp~----~~~~~y-~------~~~~i~~~i~----------- 58 (250)
.++|+||||||||||+++|+|.++|+ +|+|.++|.+.. ...++| + +.++++|.+.
T Consensus 193 ~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~ 272 (1470)
T PLN03140 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTR 272 (1470)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCc
Confidence 57899999999999999999999998 999999987642 122344 2 2345555443
Q ss_pred ---------------------------------------HHHHHHHhCCCCCC----Cchhhhhhh-hhhHHHHHHHHHh
Q 025642 59 ---------------------------------------LEDVMEELGLGPNG----GLIYCMEHL-EDNLDDWLAEELD 94 (250)
Q Consensus 59 ---------------------------------------~~~vm~~~~L~~~g----~~~~~~~~~-~~~ls~~la~aL~ 94 (250)
++++++.+||..-. |........ .++.++.||++++
T Consensus 273 ~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~ 352 (1470)
T PLN03140 273 YDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIV 352 (1470)
T ss_pred ccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhc
Confidence 13356667775421 000000111 1223489999999
Q ss_pred cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccc-ccHHHHHHhhHHhhhhHhHhcCC
Q 025642 95 NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELP 167 (250)
Q Consensus 95 ~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~vi~v~l~d~~~~-~d~~~~~s~~l~~~~~~~~~~~p 167 (250)
. +|+++++||||+ ||..+..+++ +.++++++ .|.+++++. |.. .+...+++.+++...+.+....|
T Consensus 353 ~--~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis~----Hqp~~~i~~lfD~vilL~~G~ivy~G~ 421 (1470)
T PLN03140 353 G--PTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMSL----LQPAPETFDLFDDIILLSEGQIVYQGP 421 (1470)
T ss_pred C--CCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEEe----cCCCHHHHHHhheEEEeeCceEEEeCC
Confidence 9 999999999999 9999999999 89999875 477876553 432 34556677666665555444434
No 354
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.65 E-value=8.4e-16 Score=147.55 Aligned_cols=128 Identities=19% Similarity=0.197 Sum_probs=85.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCC-C-------cccChhhh----------hhHHHHHHHh
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-P-------VAMDIREL----------ISLEDVMEEL 66 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y-~-------~~~~i~~~----------i~~~~vm~~~ 66 (250)
++|+||||+|||||+|.|+|...|.+|.|.+... -.++| . ++.++-+. ..+...+.+|
T Consensus 351 iaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~----v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET----VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred EEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc----eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 7899999999999999999999999999987321 01112 1 11122222 2367788889
Q ss_pred CCCCCCCchhhhhhhhh--hHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccc
Q 025642 67 GLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF 143 (250)
Q Consensus 67 ~L~~~g~~~~~~~~~~~--~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~ 143 (250)
++.+..... ....+.. +-++.+|+.+.. +|.+|||||||+ ||+.+...+- +. |.+..-+|++|. ||-++
T Consensus 427 ~F~~~~~~~-~v~~LSGGEk~Rl~La~ll~~--~pNvLiLDEPTNhLDi~s~~aLe-~a---L~~f~Gtvl~VS-HDr~F 498 (530)
T COG0488 427 GFTGEDQEK-PVGVLSGGEKARLLLAKLLLQ--PPNLLLLDEPTNHLDIESLEALE-EA---LLDFEGTVLLVS-HDRYF 498 (530)
T ss_pred CCChHHHhC-chhhcCHhHHHHHHHHHHhcc--CCCEEEEcCCCccCCHHHHHHHH-HH---HHhCCCeEEEEe-CCHHH
Confidence 887653211 1122222 233888988888 999999999999 9999996654 44 444445676664 45444
Q ss_pred c
Q 025642 144 I 144 (250)
Q Consensus 144 ~ 144 (250)
+
T Consensus 499 l 499 (530)
T COG0488 499 L 499 (530)
T ss_pred H
Confidence 4
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.65 E-value=3.9e-16 Score=166.00 Aligned_cols=129 Identities=19% Similarity=0.153 Sum_probs=92.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh---------HHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LED 61 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~---------~~~ 61 (250)
.++|+||+|||||||+++|.|+++|++|+|.++|.|... ..+++ +|+ -++|+++. +.+
T Consensus 1314 kiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~ 1393 (1522)
T TIGR00957 1314 KVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWW 1393 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHH
Confidence 479999999999999999999999999999999988742 34555 333 25777765 344
Q ss_pred HHHHhCCCCC-----CCchhhh-----hh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 62 VMEELGLGPN-----GGLIYCM-----EH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 62 vm~~~~L~~~-----g~~~~~~-----~~-~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
+++..++.+. +|+-... +. ..++++.+||||+.. +|+++|+||||+ +|..+...+. +.+++.. +
T Consensus 1394 al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr--~~~ILiLDEaTSalD~~Te~~Iq-~~l~~~~-~ 1469 (1522)
T TIGR00957 1394 ALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR--KTKILVLDEATAAVDLETDNLIQ-STIRTQF-E 1469 (1522)
T ss_pred HHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-C
Confidence 5555544210 1111001 11 123455999999999 999999999999 9999998777 7777653 4
Q ss_pred CCeEEEE
Q 025642 130 NFNVCAV 136 (250)
Q Consensus 130 ~~~vi~v 136 (250)
++|+++|
T Consensus 1470 ~~TvI~I 1476 (1522)
T TIGR00957 1470 DCTVLTI 1476 (1522)
T ss_pred CCEEEEE
Confidence 6787666
No 356
>PTZ00243 ABC transporter; Provisional
Probab=99.64 E-value=6.2e-16 Score=164.56 Aligned_cols=134 Identities=17% Similarity=0.220 Sum_probs=95.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh---------HHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LED 61 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~---------~~~ 61 (250)
.++|+|++|||||||+++|.|+++|++|+|.++|.|... +.++| +|+ -+||+++. +.+
T Consensus 1338 kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~ 1417 (1560)
T PTZ00243 1338 KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWA 1417 (1560)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHH
Confidence 379999999999999999999999999999999988642 34555 443 36777775 445
Q ss_pred HHHHhCCCCC-----CCchhhh-----hhh-hhhHHHHHHHHHhcCCC-CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 62 VMEELGLGPN-----GGLIYCM-----EHL-EDNLDDWLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 62 vm~~~~L~~~-----g~~~~~~-----~~~-~~~ls~~la~aL~~~~~-~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+++..++... .|+-... +.. .++++.+|||||.. + |++|||||||+ +|..+.+.+. +.+++..
T Consensus 1418 Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~--~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~- 1493 (1560)
T PTZ00243 1418 ALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK--KGSGFILMDEATANIDPALDRQIQ-ATVMSAF- 1493 (1560)
T ss_pred HHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc--CCCCEEEEeCCCccCCHHHHHHHH-HHHHHHC-
Confidence 5666555321 0110000 111 23344899999998 7 89999999999 9999999887 7777653
Q ss_pred CCCeEEEEEeccccccc
Q 025642 129 RNFNVCAVYLLDSQFIT 145 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~ 145 (250)
.++|+++| +|.++
T Consensus 1494 ~~~TvI~I----AHRl~ 1506 (1560)
T PTZ00243 1494 SAYTVITI----AHRLH 1506 (1560)
T ss_pred CCCEEEEE----eccHH
Confidence 46787665 35553
No 357
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.64 E-value=2.1e-15 Score=137.69 Aligned_cols=139 Identities=20% Similarity=0.197 Sum_probs=97.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCC-CCCc-------ccChhh----------hhhHHHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENF-DYPV-------AMDIRE----------LISLEDVMEE 65 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~-~y~~-------~~~i~~----------~i~~~~vm~~ 65 (250)
++.++|.|||||||+|+.+.|+++|++|+|+++|.....++. .|.. ++-..+ .-.++.++++
T Consensus 351 lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~Lqr 430 (546)
T COG4615 351 LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQR 430 (546)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHH
Confidence 578999999999999999999999999999999976544322 1110 000000 0015666776
Q ss_pred hCCCC----CCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEec
Q 025642 66 LGLGP----NGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (250)
Q Consensus 66 ~~L~~----~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~ 139 (250)
+.+.. +++.....+..- ++.++++..|+.. +.++++|||-.+ -||.-++.+...++-.+++.|+||+++. +
T Consensus 431 Lel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE--eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs-H 507 (546)
T COG4615 431 LELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE--ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS-H 507 (546)
T ss_pred HHHhhhhcccCCcccccccccchHHHHHHHHHHHh--hCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe-c
Confidence 66543 222222222221 1223666777878 999999999999 9999999999899999999999998886 6
Q ss_pred cccccc
Q 025642 140 DSQFIT 145 (250)
Q Consensus 140 d~~~~~ 145 (250)
|-|++.
T Consensus 508 Dd~YF~ 513 (546)
T COG4615 508 DDHYFI 513 (546)
T ss_pred Cchhhh
Confidence 666554
No 358
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.4e-15 Score=147.35 Aligned_cols=125 Identities=20% Similarity=0.251 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC---Cc---ccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PV---AMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y---~~---~~~i~~~i~------------ 58 (250)
.++++||+||||||+.+.|..++.|++|+|.++|.|... +++++ .| .-+|+|+|.
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~ 575 (716)
T KOG0058|consen 496 VVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIE 575 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHH
Confidence 689999999999999999999999999999999987632 22332 11 224555554
Q ss_pred -------HHHHHHHh------CCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 -------LEDVMEEL------GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 -------~~~vm~~~------~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
+.+.+..+ ..|+.|.+ -.-.++++.+|||||.. +|.+||+||-|+ ||..+...+- +.+.
T Consensus 576 ~AAk~ANah~FI~~~p~gY~T~VGEkG~q----LSGGQKQRIAIARALlr--~P~VLILDEATSALDaeSE~lVq-~aL~ 648 (716)
T KOG0058|consen 576 AAAKMANAHEFITNFPDGYNTVVGEKGSQ----LSGGQKQRIAIARALLR--NPRVLILDEATSALDAESEYLVQ-EALD 648 (716)
T ss_pred HHHHHhChHHHHHhCccccccccCCcccc----ccchHHHHHHHHHHHhc--CCCEEEEechhhhcchhhHHHHH-HHHH
Confidence 22333322 23344422 22335677999999999 999999999999 9999987766 7777
Q ss_pred HHHhCCCeEEEE
Q 025642 125 HLKSRNFNVCAV 136 (250)
Q Consensus 125 ~l~~~~~~vi~v 136 (250)
++.+ ++||+++
T Consensus 649 ~~~~-~rTVlvI 659 (716)
T KOG0058|consen 649 RLMQ-GRTVLVI 659 (716)
T ss_pred Hhhc-CCeEEEE
Confidence 7754 4777655
No 359
>PLN03073 ABC transporter F family; Provisional
Probab=99.63 E-value=1.3e-15 Score=151.37 Aligned_cols=143 Identities=13% Similarity=0.160 Sum_probs=87.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC---CCCCceEEEeecCCccCCC---------------------CC-Ccc--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHIVNLDPAAENF---------------------DY-PVA-------- 50 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l---~~~~G~i~i~~~dp~~~~~---------------------~y-~~~-------- 50 (250)
.+||+||||||||||+++|+|.. .|.+|+|.+.++++..... .+ ++.
T Consensus 205 ~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~ 284 (718)
T PLN03073 205 HYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETE 284 (718)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 48999999999999999999864 5788999876654311110 00 000
Q ss_pred --------------cChhhhh-----------------hHHHHHHHhCCCCCCCchhhhhhhh--hhHHHHHHHHHhcCC
Q 025642 51 --------------MDIRELI-----------------SLEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYL 97 (250)
Q Consensus 51 --------------~~i~~~i-----------------~~~~vm~~~~L~~~g~~~~~~~~~~--~~ls~~la~aL~~~~ 97 (250)
-.+.+.+ .+.++++.+|+.+..... ....+. .++++.||++|+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~-~~~~LSgG~k~rv~LA~aL~~-- 361 (718)
T PLN03073 285 TGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVK-ATKTFSGGWRMRIALARALFI-- 361 (718)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhC-chhhCCHHHHHHHHHHHHHhc--
Confidence 0000000 023344455553211000 011222 2234899999999
Q ss_pred CCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 98 DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 98 ~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+|+++||||||+ ||+.+...+. ++++++ +.++++|. |.......+++.++..
T Consensus 362 ~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~---~~tviivs----Hd~~~l~~~~d~i~~l 414 (718)
T PLN03073 362 EPDLLLLDEPTNHLDLHAVLWLE-TYLLKW---PKTFIVVS----HAREFLNTVVTDILHL 414 (718)
T ss_pred CCCEEEEECCCCCCCHHHHHHHH-HHHHHc---CCEEEEEE----CCHHHHHHhCCEEEEE
Confidence 999999999999 9999998877 666654 56776653 5555445555544433
No 360
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.63 E-value=2e-15 Score=131.22 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=79.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH----------------cCCCCCCc--------eEEEeecCCc----c------CCCCC-C
Q 025642 4 AQLVIGPAGSGKSTYCSSLY----------------RHCETVRR--------TMHIVNLDPA----A------ENFDY-P 48 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~----------------g~l~~~~G--------~i~i~~~dp~----~------~~~~y-~ 48 (250)
+.+|+||||||||||+++|+ +++.+.+| ++.+.|.+.. . +.++| +
T Consensus 25 ~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~ 104 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKK 104 (243)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECCC
Confidence 67899999999999999998 44555555 5555553211 0 11222 1
Q ss_pred cccChhh-hh---hHHHHHHHhCCCCCC-------Cchh-----------hhhhhh--hhHHHHHHHHHhc--CCCCCEE
Q 025642 49 VAMDIRE-LI---SLEDVMEELGLGPNG-------GLIY-----------CMEHLE--DNLDDWLAEELDN--YLDDDYL 102 (250)
Q Consensus 49 ~~~~i~~-~i---~~~~vm~~~~L~~~g-------~~~~-----------~~~~~~--~~ls~~la~aL~~--~~~~~~l 102 (250)
+...+.+ .. .+...++.+++.+.. +.+. ....+. ++++..||++++. ..+|+++
T Consensus 105 ~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~il 184 (243)
T cd03272 105 DEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFY 184 (243)
T ss_pred CEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEE
Confidence 1111111 11 244556666665421 1000 001111 2233889999962 1168999
Q ss_pred EEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 103 VFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 103 llDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
|+|||++ +|+.+...++ +.++++++ +.+++++|
T Consensus 185 llDEp~~~ld~~~~~~~~-~~l~~~~~-~~~ii~~~ 218 (243)
T cd03272 185 LFDEIDAALDAQYRTAVA-NMIKELSD-GAQFITTT 218 (243)
T ss_pred EEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEEe
Confidence 9999999 9999999988 78888755 66666554
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.63 E-value=9.3e-16 Score=162.81 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=86.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC-ccCCCCCCcccChhhhhh---------HHHHHHHhCC-----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS---------LEDVMEELGL----- 68 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp-~~~~~~y~~~~~i~~~i~---------~~~vm~~~~L----- 68 (250)
.++|+||||||||||+++|+|.++|++|+|.+.|.-. ..+. ++..+.++++++. ++++++..++
T Consensus 454 ~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~-~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~ 532 (1490)
T TIGR01271 454 LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQT-SWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIA 532 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCC-CccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHH
Confidence 5799999999999999999999999999999876210 0011 1111235666554 2223322221
Q ss_pred -CCCCCc-----hhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 69 -GPNGGL-----IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 69 -~~~g~~-----~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
-|.|.. ....-...+++++.||||+.. +|+++|||||++ +|+.+...+++.++..+. +++++++|.
T Consensus 533 ~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~--~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvt 605 (1490)
T TIGR01271 533 LFPEKDKTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVT 605 (1490)
T ss_pred hccccccccccCcCCCcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 122110 000011223455999999999 999999999999 999999999955666664 477877664
No 362
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.62 E-value=1.4e-15 Score=129.00 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=78.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC---------ceEEEeecCCcc----CCCCC-CcccChh----hhhhHHHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVR---------RTMHIVNLDPAA----ENFDY-PVAMDIR----ELISLEDVMEE 65 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~---------G~i~i~~~dp~~----~~~~y-~~~~~i~----~~i~~~~vm~~ 65 (250)
+++|+||||||||||+++|+|++.+.. |++.+.|.++.. ..+.| +|+.+.. ..-.+.++++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l~~ 103 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEA 103 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHHhC
Confidence 578999999999999999999986542 356666655321 22333 2222111 11124556655
Q ss_pred hCCCCCCCchhhhhhhh--hhHHHHHHHHHhc--CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 66 LGLGPNGGLIYCMEHLE--DNLDDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 66 ~~L~~~g~~~~~~~~~~--~~ls~~la~aL~~--~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
-+... .. ...+. +++++.+|++++. ..+|+++++|||++ +|+.....+. ++++++++ +.+++++
T Consensus 104 ~~~~~--~~---~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiIii 172 (197)
T cd03278 104 PGKKV--QR---LSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK-ETQFIVI 172 (197)
T ss_pred CCccc--cc---hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc-CCEEEEE
Confidence 11110 00 11121 2234888988862 11679999999999 9999999988 88888855 5666555
No 363
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.61 E-value=6.6e-15 Score=127.37 Aligned_cols=75 Identities=15% Similarity=0.070 Sum_probs=53.0
Q ss_pred HHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCC--CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025642 60 EDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (250)
Q Consensus 60 ~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~--~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~ 135 (250)
.+.++.+++.+.....+..+... +++++.||++++. +| +++|+|||++ +|+.++..+. +++++++++|.++++
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~--~p~~~llllDEPt~gLD~~~~~~l~-~~l~~~~~~g~tii~ 194 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHPRDNDRLI-ETLKRLRDLGNTVLV 194 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHh--CCCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 35677777764211111111121 3344999999998 87 6999999999 9999999999 888888777888776
Q ss_pred EE
Q 025642 136 VY 137 (250)
Q Consensus 136 v~ 137 (250)
+.
T Consensus 195 it 196 (226)
T cd03270 195 VE 196 (226)
T ss_pred EE
Confidence 63
No 364
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.60 E-value=5.2e-15 Score=119.63 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=93.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC---CceEEEeecCC----cc-CCCCC-------CcccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP----AA-ENFDY-------PVAMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~i~i~~~dp----~~-~~~~y-------~~~~~i~~~i~---------- 58 (250)
++-++||+|||||||+..+.|++.+. .|++.+++++. ++ +.++. +|.+++.+++-
T Consensus 30 ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~ 109 (213)
T COG4136 30 IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGN 109 (213)
T ss_pred EEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCcccccH
Confidence 57799999999999999999999874 79999988663 22 11211 22333333221
Q ss_pred -----HHHHHHHhCCCCCCCchhhhhhhhhhH--HHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025642 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (250)
Q Consensus 59 -----~~~vm~~~~L~~~g~~~~~~~~~~~~l--s~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~ 130 (250)
+...+++.|+...--.. -+.+...+ ++++-|+|.. .|+.+++|||++ +|..-+.+...-...+.+..|
T Consensus 110 aRr~~a~aAL~~~gL~g~f~~d--P~tlSGGQrARvaL~R~Lla--~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~ag 185 (213)
T COG4136 110 ARRNAANAALERSGLDGAFHQD--PATLSGGQRARVALLRALLA--QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAG 185 (213)
T ss_pred HHHhhHHHHHHHhccchhhhcC--hhhcCcchHHHHHHHHHHHh--CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcC
Confidence 67788888886532110 12222222 3889999999 999999999999 999999998866777777778
Q ss_pred CeEEEEE
Q 025642 131 FNVCAVY 137 (250)
Q Consensus 131 ~~vi~v~ 137 (250)
..++.|.
T Consensus 186 iPtv~VT 192 (213)
T COG4136 186 IPTVQVT 192 (213)
T ss_pred CCeEEEe
Confidence 8877775
No 365
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=5.6e-15 Score=122.15 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=92.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------------CCCCC-Ccc------------cChh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDY-PVA------------MDIR 54 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------------~~~~y-~~~------------~~i~ 54 (250)
+.+|+|.+|||||||+++|++.+.|+.|+|.+...+-.. -..++ .++ -+|.
T Consensus 34 VLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiG 113 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIG 113 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccc
Confidence 578999999999999999999999999999997633210 01111 110 1111
Q ss_pred hhh-------------hHHHHHHHhCCCCCCCchhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHH
Q 025642 55 ELI-------------SLEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (250)
Q Consensus 55 ~~i-------------~~~~vm~~~~L~~~g~~~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i 118 (250)
|.. +..+++++..+++..-.... ..+. .+++..||+-|.. .|+++++||||- +|...+..+
T Consensus 114 ERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~P-rtFSGGMqQRLQiARnLVt--~PrLvfMDEPTGGLDVSVQARL 190 (258)
T COG4107 114 ERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLP-RTFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQARL 190 (258)
T ss_pred hhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcc-cccchHHHHHHHHHHHhcc--CCceEEecCCCCCcchhhHHHH
Confidence 111 16789999988875311000 1111 2344899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhC-CCeEEEEE
Q 025642 119 LRNFVDHLKSR-NFNVCAVY 137 (250)
Q Consensus 119 ~~~ll~~l~~~-~~~vi~v~ 137 (250)
+ ++++.+..+ +..+++|.
T Consensus 191 L-DllrgLv~~l~la~viVT 209 (258)
T COG4107 191 L-DLLRGLVRELGLAVVIVT 209 (258)
T ss_pred H-HHHHHHHHhcCceEEEEe
Confidence 9 999998754 88877664
No 366
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.60 E-value=3e-15 Score=159.01 Aligned_cols=133 Identities=21% Similarity=0.219 Sum_probs=95.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh---------HHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LED 61 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~---------~~~ 61 (250)
-++|+|++|||||||+++|.|+++ .+|+|.++|.|... +.+.| ||+ -++|++++ +.+
T Consensus 1247 kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~ 1325 (1490)
T TIGR01271 1247 RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWK 1325 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHH
Confidence 379999999999999999999997 79999999988632 34555 433 26787775 455
Q ss_pred HHHHhCCCCC-----CCchhhh-----hh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 62 VMEELGLGPN-----GGLIYCM-----EH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 62 vm~~~~L~~~-----g~~~~~~-----~~-~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
++++.++... +|+-... +. ..++++.+|||+|.. +|++|||||||+ +|..+.+.+. +.+++.. .
T Consensus 1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr--~~~ILlLDEaTS~lD~~Te~~I~-~~L~~~~-~ 1401 (1490)
T TIGR01271 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS--KAKILLLDEPSAHLDPVTLQIIR-KTLKQSF-S 1401 (1490)
T ss_pred HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-C
Confidence 6666665321 1111111 11 123344899999999 999999999999 9999998888 6666653 4
Q ss_pred CCeEEEEEeccccccc
Q 025642 130 NFNVCAVYLLDSQFIT 145 (250)
Q Consensus 130 ~~~vi~v~l~d~~~~~ 145 (250)
++|+++|. |.+.
T Consensus 1402 ~~TvI~Ia----HRl~ 1413 (1490)
T TIGR01271 1402 NCTVILSE----HRVE 1413 (1490)
T ss_pred CCEEEEEe----cCHH
Confidence 67887663 6554
No 367
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.59 E-value=2.2e-15 Score=160.36 Aligned_cols=130 Identities=21% Similarity=0.277 Sum_probs=84.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC-ccCCCCCCcccChhhhhh---------HHHHHH------HhC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS---------LEDVME------ELG 67 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp-~~~~~~y~~~~~i~~~i~---------~~~vm~------~~~ 67 (250)
.++|+||||||||||+++|.|.++|.+|+|.+.|.-. ..+. ++-.+.+++|++. .+++++ .++
T Consensus 666 ~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~-~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~ 744 (1522)
T TIGR00957 666 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ-AWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLE 744 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCC-ccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHH
Confidence 4799999999999999999999999999998875210 0011 1112335666554 222332 233
Q ss_pred CCCCCCc--h--hhhhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH--HHHhCCCeEEEEE
Q 025642 68 LGPNGGL--I--YCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD--HLKSRNFNVCAVY 137 (250)
Q Consensus 68 L~~~g~~--~--~~~~~-~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~--~l~~~~~~vi~v~ 137 (250)
.-|.|.. + ...+. ..++++++||||+.. +|+++|+|||++ +|+.+.+.+++.+.+ .+ .++++++++.
T Consensus 745 ~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~--~~~illLDEp~saLD~~~~~~i~~~l~~~~~~-~~~~tvIlvT 819 (1522)
T TIGR00957 745 ILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV-LKNKTRILVT 819 (1522)
T ss_pred hcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhhh-hcCCEEEEEe
Confidence 3232210 0 00111 223456999999999 999999999999 999999999844443 22 2467776653
No 368
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.59 E-value=4e-15 Score=130.42 Aligned_cols=132 Identities=15% Similarity=0.116 Sum_probs=81.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CceEEEeec-CCc--------c--------CCC---------CCCcccChh--
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNL-DPA--------A--------ENF---------DYPVAMDIR-- 54 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~i~i~~~-dp~--------~--------~~~---------~y~~~~~i~-- 54 (250)
+.+|+|||||||||++++|++.+.+. .|++...+. +.. . ++. ...+.+++.
T Consensus 27 ~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~ 106 (251)
T cd03273 27 FNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQ 106 (251)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEEE
Confidence 57899999999999999999998765 345555443 100 0 000 000011111
Q ss_pred ----------------hhhhHHHHHHHhCCCCCC-C----------------c--hhhhhhhh-hhHHHHHHHHHhc--C
Q 025642 55 ----------------ELISLEDVMEELGLGPNG-G----------------L--IYCMEHLE-DNLDDWLAEELDN--Y 96 (250)
Q Consensus 55 ----------------~~i~~~~vm~~~~L~~~g-~----------------~--~~~~~~~~-~~ls~~la~aL~~--~ 96 (250)
..-.+.++++.+++.++. . . .+..+... +++++++|++++. .
T Consensus 107 I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~ 186 (251)
T cd03273 107 IVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLF 186 (251)
T ss_pred EEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhc
Confidence 011266788889986321 0 0 00011111 2233888988862 1
Q ss_pred CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 97 LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 97 ~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
.+|+++++|||++ +|+.....+. ++++++. .|.+++++.
T Consensus 187 ~~~~illlDEPt~~ld~~~~~~~~-~~l~~~~-~g~~ii~iS 226 (251)
T cd03273 187 KPAPMYILDEVDAALDLSHTQNIG-RMIKTHF-KGSQFIVVS 226 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHc-CCCEEEEEE
Confidence 1789999999999 9999999988 8888874 477766553
No 369
>PLN03130 ABC transporter C family member; Provisional
Probab=99.59 E-value=6.1e-15 Score=157.42 Aligned_cols=130 Identities=16% Similarity=0.219 Sum_probs=86.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC-ceEEEeecCCccCCCCCCcccChhhhhh---------HHHHHHHhCCC----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLG---- 69 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~-G~i~i~~~dp~~~~~~y~~~~~i~~~i~---------~~~vm~~~~L~---- 69 (250)
.++|+||+|||||||+++|.|.++|.+ |+|.+.+.--....-++-.+-+|||+|. ++++++..++.
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~ 724 (1622)
T PLN03130 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLD 724 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHH
Confidence 478999999999999999999999999 8987643110000111222346777665 44444443332
Q ss_pred --CCCCchh----hhh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 70 --PNGGLIY----CME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 70 --~~g~~~~----~~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
|.|..-. ..+ .-.++++++||||+.. +|+++|||||++ +|..+.+.++.+.++.+. +++|+++|
T Consensus 725 ~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~--~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlV 796 (1622)
T PLN03130 725 LLPGGDLTEIGERGVNISGGQKQRVSMARAVYS--NSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLV 796 (1622)
T ss_pred hCCCcccccccCCCCCCCHHHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEE
Confidence 1110000 011 1224566999999999 999999999999 999999888867776653 46676555
No 370
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.58 E-value=2.5e-14 Score=121.95 Aligned_cols=128 Identities=17% Similarity=0.117 Sum_probs=73.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH----cCCCCCCceEEEee----cCCccCCCCC-Cc-----c------cChhhhhh---HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLY----RHCETVRRTMHIVN----LDPAAENFDY-PV-----A------MDIRELIS---LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~----g~l~~~~G~i~i~~----~dp~~~~~~y-~~-----~------~~i~~~i~---~~ 60 (250)
+++|+||||||||||+++|. |...+.+|.+.... .......+.+ ++ . +++.+.+. -.
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~ 103 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG 103 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence 67999999999999999995 88888777554111 1111111111 11 1 12222221 01
Q ss_pred HHHHHhCCC---CCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHH-HHHHHHHHHHHhC-CCeEE
Q 025642 61 DVMEELGLG---PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV-PVLRNFVDHLKSR-NFNVC 134 (250)
Q Consensus 61 ~vm~~~~L~---~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~-~i~~~ll~~l~~~-~~~vi 134 (250)
++-+.+.-. -.+|+. ....-.+++++++++.. +|+++++|||++ +|+..+. .+. +++++++++ +.+++
T Consensus 104 ~~~~~~~~~~~~LS~G~~---~~~~la~rlala~al~~--~p~illlDEP~~~LD~~~~~~~l~-~~l~~~~~~~~~~ii 177 (204)
T cd03240 104 ESNWPLLDMRGRCSGGEK---VLASLIIRLALAETFGS--NCGILALDEPTTNLDEENIEESLA-EIIEERKSQKNFQLI 177 (204)
T ss_pred HHHHHHhcCccccCccHH---HHHHHHHHHHHHHHhcc--CCCEEEEcCCccccCHHHHHHHHH-HHHHHHHhccCCEEE
Confidence 111111101 111110 00000012568889988 999999999999 9999998 777 888888765 67776
Q ss_pred EEE
Q 025642 135 AVY 137 (250)
Q Consensus 135 ~v~ 137 (250)
++.
T Consensus 178 iit 180 (204)
T cd03240 178 VIT 180 (204)
T ss_pred EEE
Confidence 553
No 371
>PTZ00243 ABC transporter; Provisional
Probab=99.57 E-value=1.3e-14 Score=154.43 Aligned_cols=124 Identities=22% Similarity=0.236 Sum_probs=81.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCC-C-----cccChhhhhh---------HHHH------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-P-----VAMDIRELIS---------LEDV------ 62 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y-~-----~~~~i~~~i~---------~~~v------ 62 (250)
.++|+||||||||||+++|+|.++|++|+|.+.+ .++| + .+.++++++. ++++
T Consensus 688 ~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~------~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l 761 (1560)
T PTZ00243 688 LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER------SIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQL 761 (1560)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC------eEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhh
Confidence 5899999999999999999999999999987632 1222 1 1235555553 1222
Q ss_pred ---HHHh--CCCCCCCchhhhhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025642 63 ---MEEL--GLGPNGGLIYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (250)
Q Consensus 63 ---m~~~--~L~~~g~~~~~~~~-~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~ 135 (250)
++.+ |+...-+.. ..+. ..+++++.|||++.. +|+++|||||++ ||+.+...+++.++.... .|+++++
T Consensus 762 ~~~l~~l~~g~~t~i~~~-g~~LSGGQkqRvaLARAl~~--~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIl 837 (1560)
T PTZ00243 762 EADLAQLGGGLETEIGEK-GVNLSGGQKARVSLARAVYA--NRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVL 837 (1560)
T ss_pred HHHHHHhhccchHHhcCC-CCCCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEE
Confidence 2222 221110000 0011 123455999999999 999999999999 999999888855554432 4677766
Q ss_pred EE
Q 025642 136 VY 137 (250)
Q Consensus 136 v~ 137 (250)
+.
T Consensus 838 vT 839 (1560)
T PTZ00243 838 AT 839 (1560)
T ss_pred Ee
Confidence 53
No 372
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.57 E-value=7.4e-15 Score=125.79 Aligned_cols=63 Identities=11% Similarity=-0.043 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcC--------CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHH
Q 025642 85 LDDWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (250)
Q Consensus 85 ls~~la~aL~~~--------~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s 152 (250)
+++.+|++++.. .+|+++|+|||++ +|+.+...+. ++++++++++.+++++. |.......+++
T Consensus 130 ~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~-~~l~~~~~~~~tii~it----H~~~~~~~~~~ 201 (213)
T cd03279 130 FLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA-TALELIRTENRMVGVIS----HVEELKERIPQ 201 (213)
T ss_pred HHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEE----CchHHHHhhCc
Confidence 348899999741 1578999999999 9999999988 88888876678876663 55544444433
No 373
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.55 E-value=1.6e-14 Score=147.01 Aligned_cols=126 Identities=21% Similarity=0.217 Sum_probs=89.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC---Cc---ccChhhhhh-------HHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PV---AMDIRELIS-------LEDVM 63 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y---~~---~~~i~~~i~-------~~~vm 63 (250)
.++++||+||||||.+.+|-.++.|++|.|.++|.|... ++++. .| +-+|||++. .++++
T Consensus 1018 TvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi 1097 (1228)
T KOG0055|consen 1018 TVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEII 1097 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHH
Confidence 478999999999999999999999999999999988633 22222 22 345777665 22333
Q ss_pred HHhC------------------CCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 64 EELG------------------LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 64 ~~~~------------------L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
+... .|..|.+ -.-.+++|.+||||+.. +|++|||||-|+ ||..+.+.+- +.++
T Consensus 1098 ~Aak~ANaH~FI~sLP~GyDT~vGerG~Q----LSGGQKQRIAIARAilR--nPkILLLDEATSALDseSErvVQ-eALd 1170 (1228)
T KOG0055|consen 1098 EAAKLANAHNFISSLPQGYDTRVGERGVQ----LSGGQKQRIAIARAILR--NPKILLLDEATSALDSESERVVQ-EALD 1170 (1228)
T ss_pred HHHHHhhhHHHHhcCcCcccCccCcccCc----CCchHHHHHHHHHHHHc--CCCeeeeeccchhhhhhhHHHHH-HHHH
Confidence 2211 1222221 12234577999999999 999999999999 9999987766 8888
Q ss_pred HHHhCCCe-EEEEE
Q 025642 125 HLKSRNFN-VCAVY 137 (250)
Q Consensus 125 ~l~~~~~~-vi~v~ 137 (250)
+... |.| |++.|
T Consensus 1171 ~a~~-gRT~IvIAH 1183 (1228)
T KOG0055|consen 1171 RAME-GRTTIVIAH 1183 (1228)
T ss_pred Hhhc-CCcEEEEec
Confidence 8754 555 44444
No 374
>PLN03232 ABC transporter C family member; Provisional
Probab=99.55 E-value=4.2e-14 Score=150.45 Aligned_cols=125 Identities=16% Similarity=0.239 Sum_probs=84.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCC-C-----cccChhhhhh---------HHHHHHHhCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-P-----VAMDIRELIS---------LEDVMEELGL 68 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y-~-----~~~~i~~~i~---------~~~vm~~~~L 68 (250)
.++|+||+|||||||+++|.|.++|.+|.+.... ..++| + .+-+|||++. ++++++..++
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~-----~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L 719 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVVIR-----GSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTAL 719 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcccCCCEEEec-----CcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 4789999999999999999999999987653221 12333 1 1335666665 4445544443
Q ss_pred C------CCCCchh----hhh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 69 G------PNGGLIY----CME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 69 ~------~~g~~~~----~~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
. |.|..-. ..+ .-.++++++||||+.. +|+++|||||++ +|..+.+.++.++++... +++|+++|
T Consensus 720 ~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~--~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~Ilv 796 (1495)
T PLN03232 720 QHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS--NSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLV 796 (1495)
T ss_pred HHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEE
Confidence 2 2210000 001 1224566999999999 999999999999 999999988867776653 45666555
No 375
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.55 E-value=2e-14 Score=133.31 Aligned_cols=117 Identities=19% Similarity=0.304 Sum_probs=81.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCC-C------cccChhhhhh------------HHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-P------VAMDIRELIS------------LEDVME 64 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y-~------~~~~i~~~i~------------~~~vm~ 64 (250)
+++++||||-||||+++.|+|.++|++|+ .. + -.++| | .+-++++++. -.++++
T Consensus 369 vigilGpNgiGKTTFvk~LAG~ikPdeg~--~~--~---~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~ 441 (591)
T COG1245 369 VIGILGPNGIGKTTFVKLLAGVIKPDEGS--EE--D---LKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVK 441 (591)
T ss_pred EEEEECCCCcchHHHHHHHhccccCCCCC--Cc--c---ceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcC
Confidence 68999999999999999999999999997 11 1 12233 2 2334555543 223333
Q ss_pred HhCCCCCCCchhhhhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025642 65 ELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (250)
Q Consensus 65 ~~~L~~~g~~~~~~~~~~~~------ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~vi~v 136 (250)
-++|.+. ++....+ ++++||.+|.. ++|++++|||.+ ||...+..+. +.++++..+ +++.++|
T Consensus 442 pl~l~~i------~e~~v~~LSGGELQRvaIaa~L~r--eADlYllDEPSA~LDvEqR~~va-kvIRR~~e~~~kta~vV 512 (591)
T COG1245 442 PLNLEDL------LERPVDELSGGELQRVAIAAALSR--EADLYLLDEPSAYLDVEQRIIVA-KVIRRFIENNEKTALVV 512 (591)
T ss_pred ccchHHH------HhcccccCCchhHHHHHHHHHhcc--ccCEEEecCchhhccHHHHHHHH-HHHHHHHhhcCceEEEE
Confidence 3333322 2333322 44899999999 999999999999 9999998877 888887754 5555444
No 376
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.4e-14 Score=135.83 Aligned_cols=128 Identities=19% Similarity=0.238 Sum_probs=76.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEe-------ecCCccCCCCCCcccChhhhhh--------------HHHHH
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-------NLDPAAENFDYPVAMDIRELIS--------------LEDVM 63 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~-------~~dp~~~~~~y~~~~~i~~~i~--------------~~~vm 63 (250)
+|++||||+|||||+|+|+. |.|... |-+.....-....+....+++. +.+++
T Consensus 109 YGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L 182 (582)
T KOG0062|consen 109 YGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKIL 182 (582)
T ss_pred cceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHH
Confidence 58999999999999999997 333221 1111000000001111111111 22266
Q ss_pred HHhCCCCCCCchhhhhhhhhh--HHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 025642 64 EELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (250)
Q Consensus 64 ~~~~L~~~g~~~~~~~~~~~~--ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d 140 (250)
..+|+.+.-.. .....+... ++.+||||+.. +||+|+|||||+ ||..+... +-..|+.++.|+++|. +|
T Consensus 183 ~glGFt~emq~-~pt~slSGGWrMrlaLARAlf~--~pDlLLLDEPTNhLDv~av~W----Le~yL~t~~~T~liVS-HD 254 (582)
T KOG0062|consen 183 AGLGFTPEMQL-QPTKSLSGGWRMRLALARALFA--KPDLLLLDEPTNHLDVVAVAW----LENYLQTWKITSLIVS-HD 254 (582)
T ss_pred HhCCCCHHHHh-ccccccCcchhhHHHHHHHHhc--CCCEEeecCCcccchhHHHHH----HHHHHhhCCceEEEEe-cc
Confidence 67787764211 112223332 34899999999 999999999999 99987743 3455666677887775 77
Q ss_pred cccccc
Q 025642 141 SQFITD 146 (250)
Q Consensus 141 ~~~~~d 146 (250)
+.++..
T Consensus 255 r~FLn~ 260 (582)
T KOG0062|consen 255 RNFLNT 260 (582)
T ss_pred HHHHHH
Confidence 776653
No 377
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.54 E-value=3.8e-14 Score=124.11 Aligned_cols=133 Identities=17% Similarity=0.206 Sum_probs=82.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC------c------cC--CCCC-Cc------------------c
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP------A------AE--NFDY-PV------------------A 50 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp------~------~~--~~~y-~~------------------~ 50 (250)
+.+|+|||||||||++.+|++.+.+..|++...+.+. . .. .+.+ .+ .
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence 5789999999999999999998876656554432110 0 00 0000 00 0
Q ss_pred cC--hhhhhhHHHHHHHhCCCCCCC-------chhh-------------hhhhh--hhHHHHHHHHHhcC--CCCCEEEE
Q 025642 51 MD--IRELISLEDVMEELGLGPNGG-------LIYC-------------MEHLE--DNLDDWLAEELDNY--LDDDYLVF 104 (250)
Q Consensus 51 ~~--i~~~i~~~~vm~~~~L~~~g~-------~~~~-------------~~~~~--~~ls~~la~aL~~~--~~~~~lll 104 (250)
++ ....-.++++++.+|+.+... .+.. ...+. ++.++.||++++.. .+|+++|+
T Consensus 104 ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lll 183 (247)
T cd03275 104 INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVL 183 (247)
T ss_pred ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 00 000112667888888864321 1000 01111 22338899988750 14899999
Q ss_pred eCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 105 DCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 105 DEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
|||++ +|+..+..+. +++++++++|.+++++.
T Consensus 184 DEPt~~LD~~~~~~l~-~~i~~~~~~g~~vi~is 216 (247)
T cd03275 184 DEVDAALDNTNVGKVA-SYIREQAGPNFQFIVIS 216 (247)
T ss_pred ecccccCCHHHHHHHH-HHHHHhccCCcEEEEEE
Confidence 99999 9999999988 88888876677877664
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.53 E-value=6.7e-15 Score=126.30 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=38.2
Q ss_pred HHHHHHHHHhc--CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 85 LDDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 85 ls~~la~aL~~--~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
+++.+|++++. ..+|+++++|||++ +|+.++..+. ++++++++. .+++++
T Consensus 134 ~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~-~~l~~~~~~-~~~iiv 186 (212)
T cd03274 134 TLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVA-NYIKERTKN-AQFIVI 186 (212)
T ss_pred HHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHcCC-CEEEEE
Confidence 34889998863 11579999999999 9999999888 888888654 444444
No 379
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.51 E-value=4.8e-14 Score=116.67 Aligned_cols=141 Identities=18% Similarity=0.253 Sum_probs=92.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-------CcccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-------~~~~~i~~~i~----------- 58 (250)
+.=+|||||||||||+..++|++ |-+|+|.+.|++... +.-+| +..+.+..+++
T Consensus 27 ~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~ 105 (248)
T COG4138 27 ILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTEL 105 (248)
T ss_pred EEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHH
Confidence 34589999999999999999987 568999999987521 11111 00122333332
Q ss_pred HHHHHHHhCCCCCCCchhhhhhhhhhHH------HHHHHHHhcC-----CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNY-----LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 59 ~~~vm~~~~L~~~g~~~~~~~~~~~~ls------~~la~aL~~~-----~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
+.++...++++... .+...++| +.+|...... ...+++++|||.+ +|...+...- +++.++
T Consensus 106 i~~i~~~L~l~DKL------~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd-rll~~~ 178 (248)
T COG4138 106 LNDVAGALALDDKL------GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD-RLLSAL 178 (248)
T ss_pred HHHHHhhhcccchh------hhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH-HHHHHH
Confidence 56777788888763 33333333 4444433322 1346999999999 9999887766 999999
Q ss_pred HhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 127 ~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
.+.|.+|++. +|.+..--.-.+.+.+
T Consensus 179 c~~G~~vims----~HDLNhTLrhA~~~wL 204 (248)
T COG4138 179 CQQGLAIVMS----SHDLNHTLRHAHRAWL 204 (248)
T ss_pred HhCCcEEEEe----ccchhhHHHHHHHHHH
Confidence 9999998654 4665544444444443
No 380
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.49 E-value=8.9e-14 Score=127.49 Aligned_cols=152 Identities=17% Similarity=0.231 Sum_probs=107.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEEeecCCcc-----------CCCCC---------CcccChhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~dp~~-----------~~~~y---------~~~~~i~~~i~ 58 (250)
.++++|.+|||||-....+.++++. -+|+|.+.|.|.-. ..+.. .|-.+|...+.
T Consensus 38 tlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~ 117 (534)
T COG4172 38 TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLA 117 (534)
T ss_pred EEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHH
Confidence 4789999999999999999999865 36899999988621 12222 12223332221
Q ss_pred -----------------HHHHHHHhCCCCCCCch--hhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHH
Q 025642 59 -----------------LEDVMEELGLGPNGGLI--YCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (250)
Q Consensus 59 -----------------~~~vm~~~~L~~~g~~~--~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~ 117 (250)
+-++++..|+..-.... |..+... +.+++.||.||++ +|++||.||||. ||...+.+
T Consensus 118 E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan--~P~lLIADEPTTALDVtvQaQ 195 (534)
T COG4172 118 EVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN--EPDLLIADEPTTALDVTVQAQ 195 (534)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcC--CCCeEeecCCcchhhhhhHHH
Confidence 55778888886433221 1111111 2345999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhC-CCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 118 VLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 118 i~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
++ +++++|+++ |+.++.+. |++.=..+|.+.+.....+.+
T Consensus 196 IL-~Ll~~Lq~~~gMa~lfIT----HDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 196 IL-DLLKELQAELGMAILFIT----HDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred HH-HHHHHHHHHhCcEEEEEe----ccHHHHHHhhhhEEEEeccEE
Confidence 99 999999865 99887664 777767777776655544443
No 381
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.49 E-value=9.2e-14 Score=130.99 Aligned_cols=125 Identities=18% Similarity=0.240 Sum_probs=82.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC-c--cCC----CCCCc---------ccChhhhhhHHHHHHHhCC
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-A--AEN----FDYPV---------AMDIRELISLEDVMEELGL 68 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp-~--~~~----~~y~~---------~~~i~~~i~~~~vm~~~~L 68 (250)
++++||||+|||||+|++.|.+.|..|.|.-....- + .++ .+|.. ..+..+.=.+..++.++||
T Consensus 419 vAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgL 498 (614)
T KOG0927|consen 419 VALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGL 498 (614)
T ss_pred eeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCC
Confidence 689999999999999999999999999986543221 1 111 11100 0012222236778889999
Q ss_pred CCCCCchhhhhhhhhhH--HHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 69 GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 69 ~~~g~~~~~~~~~~~~l--s~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
.... +...+..+...+ ++.+|+.+.. .|.+|+|||||+ ||..+..... + .++++..+++.|
T Consensus 499 tgd~-q~~p~~~LS~Gqr~rVlFa~l~~k--qP~lLlLDEPtnhLDi~tid~la-e---aiNe~~Ggvv~v 562 (614)
T KOG0927|consen 499 TGDA-QVVPMSQLSDGQRRRVLFARLAVK--QPHLLLLDEPTNHLDIETIDALA-E---AINEFPGGVVLV 562 (614)
T ss_pred Cccc-cccchhhcccccchhHHHHHHHhc--CCcEEEecCCCcCCCchhHHHHH-H---HHhccCCceeee
Confidence 7543 222334443322 2888988888 999999999999 9999885544 4 444444456555
No 382
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.9e-13 Score=127.89 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=88.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cccc-----Chhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELI------------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~~-----~i~~~i------------- 57 (250)
.++++||+|+||||++|.+..++..++|.|.++|+|..+ ..++. ||+- +|..+|
T Consensus 566 tvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asneevy 645 (790)
T KOG0056|consen 566 TVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVY 645 (790)
T ss_pred EEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHH
Confidence 578999999999999999999999999999999999732 22333 2221 111111
Q ss_pred h---HHHHHHH-hC--------CCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 58 S---LEDVMEE-LG--------LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 58 ~---~~~vm~~-~~--------L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
. +.++=++ ++ .|+.| +. -.-.++++++|||++.+ .|.++++||.|+ +|..+.+.+- .-+.
T Consensus 646 aAAkAA~IHdrIl~fPegY~t~VGERG-Lk---LSGGEKQRVAiARtiLK--~P~iIlLDEATSALDT~tER~IQ-aaL~ 718 (790)
T KOG0056|consen 646 AAAKAAQIHDRILQFPEGYNTRVGERG-LK---LSGGEKQRVAIARTILK--APSIILLDEATSALDTNTERAIQ-AALA 718 (790)
T ss_pred HHHHHhhHHHHHhcCchhhhhhhhhcc-cc---cCCcchhhHHHHHHHhc--CCcEEEEcchhhhcCCccHHHHH-HHHH
Confidence 1 1111111 11 12221 10 11124577999999999 999999999999 9999999987 7888
Q ss_pred HHHhCCCeEEEEEecc
Q 025642 125 HLKSRNFNVCAVYLLD 140 (250)
Q Consensus 125 ~l~~~~~~vi~v~l~d 140 (250)
++.....+|++.|-.+
T Consensus 719 rlca~RTtIVvAHRLS 734 (790)
T KOG0056|consen 719 RLCANRTTIVVAHRLS 734 (790)
T ss_pred HHhcCCceEEEeeeeh
Confidence 8877666676666443
No 383
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.48 E-value=4.1e-14 Score=144.36 Aligned_cols=154 Identities=18% Similarity=0.216 Sum_probs=103.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC--CCCceEEEeecCCc----cCCCCCC-------cccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDPA----AENFDYP-------VAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~--~~~G~i~i~~~dp~----~~~~~y~-------~~~~i~~~i~------------ 58 (250)
..+++|++|||||||++.|+|=.. ..+|+|.++|..-. ++..+|- +..+|||.+.
T Consensus 819 LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~ 898 (1391)
T KOG0065|consen 819 LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVS 898 (1391)
T ss_pred eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCC
Confidence 578999999999999999999643 24689999986543 2334551 2456777654
Q ss_pred -------HHHHHHHhCCCCCCCchhhh--h--hhhhhHHHHHHHHHhcCCCC-CEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025642 59 -------LEDVMEELGLGPNGGLIYCM--E--HLEDNLDDWLAEELDNYLDD-DYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (250)
Q Consensus 59 -------~~~vm~~~~L~~~g~~~~~~--~--~~~~~ls~~la~aL~~~~~~-~~lllDEPt~-LD~~~~~~i~~~ll~~ 125 (250)
++++|+.++|++...-+-.. + ...++.++.||-.|+. +| .+|++||||+ ||..+...++ +++++
T Consensus 899 ~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA--~P~~ilFLDEPTSGLDsqaA~~i~-~~lrk 975 (1391)
T KOG0065|consen 899 DEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVA--NPSSILFLDEPTSGLDSQAAAIVM-RFLRK 975 (1391)
T ss_pred HHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEec--CCceeEEecCCCCCccHHHHHHHH-HHHHH
Confidence 88899999988643110000 0 0111122667777777 99 8999999999 9999999999 99999
Q ss_pred HHhCCCeEEEE-EeccccccccHHHHHHhhHH-hhhhHhHh
Q 025642 126 LKSRNFNVCAV-YLLDSQFITDVTKFISGCMA-SLSAMVQL 164 (250)
Q Consensus 126 l~~~~~~vi~v-~l~d~~~~~d~~~~~s~~l~-~~~~~~~~ 164 (250)
+.+.|.+|+++ | +--.+..+-++.+++ -.++....
T Consensus 976 la~tGqtIlCTIH----QPS~~ife~FD~LLLLkrGGqtVY 1012 (1391)
T KOG0065|consen 976 LADTGQTILCTIH----QPSIDIFEAFDELLLLKRGGQTVY 1012 (1391)
T ss_pred HHhcCCeEEEEec----CCcHHHHHHHhHHHHHhcCCeEEE
Confidence 99999997654 4 222333344444443 44444433
No 384
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.48 E-value=9.6e-14 Score=128.82 Aligned_cols=122 Identities=23% Similarity=0.303 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccC---------------------------CCCC----Cc--
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE---------------------------NFDY----PV-- 49 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~---------------------------~~~y----~~-- 49 (250)
.++||+||||-||||-+++|+|.+.|.=|+.. -.|.++ ..+| |.
T Consensus 101 ~V~GilG~NGiGKsTalkILaGel~PNLG~~~---~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~ 177 (591)
T COG1245 101 KVVGILGPNGIGKSTALKILAGELKPNLGRYE---DPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVV 177 (591)
T ss_pred cEEEEEcCCCccHHHHHHHHhCccccCCCCCC---CCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHh
Confidence 47899999999999999999999999877641 122211 1111 00
Q ss_pred ccChhhhhh-------HHHHHHHhCCCCCCCchhhhhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhH
Q 025642 50 AMDIRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (250)
Q Consensus 50 ~~~i~~~i~-------~~~vm~~~~L~~~g~~~~~~~~~~~~------ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~ 115 (250)
.-++++.+. .++++++++|..- +++-..+ ++++||.++.. ++++++||||++ ||...+
T Consensus 178 KG~v~elLk~~de~g~~devve~l~L~nv------l~r~v~~LSGGELQr~aIaa~l~r--dADvY~FDEpsSyLDi~qR 249 (591)
T COG1245 178 KGKVGELLKKVDERGKFDEVVERLGLENV------LDRDVSELSGGELQRVAIAAALLR--DADVYFFDEPSSYLDIRQR 249 (591)
T ss_pred cchHHHHHHhhhhcCcHHHHHHHhcchhh------hhhhhhhcCchHHHHHHHHHHHhc--cCCEEEEcCCcccccHHHH
Confidence 113444443 7788888888764 2222222 44899999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEE
Q 025642 116 VPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 116 ~~i~~~ll~~l~~~~~~vi~v 136 (250)
..+. ++++++.+.++.|++|
T Consensus 250 l~~a-r~Irel~~~~k~ViVV 269 (591)
T COG1245 250 LNAA-RVIRELAEDGKYVIVV 269 (591)
T ss_pred HHHH-HHHHHHhccCCeEEEE
Confidence 9988 9999998777888776
No 385
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.47 E-value=1.1e-12 Score=115.93 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=54.5
Q ss_pred HHHHHHHhCCCC-CCCchhhhhhhhhhHHHHHHHHHhcCCC---CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025642 59 LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (250)
Q Consensus 59 ~~~vm~~~~L~~-~g~~~~~~~~~~~~ls~~la~aL~~~~~---~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~v 133 (250)
..++++++||+. ..+....--...+.+++.||++|.. + |+++|+|||++ +|+.....+. ++++++.++|.++
T Consensus 149 ~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~--~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~~g~tv 225 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSK--RSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDKGNTV 225 (261)
T ss_pred HHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhc--CCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEE
Confidence 345667788875 2222111111123445899999997 5 79999999999 9999999998 8889888778888
Q ss_pred EEEE
Q 025642 134 CAVY 137 (250)
Q Consensus 134 i~v~ 137 (250)
+++.
T Consensus 226 Iiit 229 (261)
T cd03271 226 VVIE 229 (261)
T ss_pred EEEe
Confidence 7663
No 386
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.6e-13 Score=123.27 Aligned_cols=131 Identities=16% Similarity=0.172 Sum_probs=87.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cccc-----Chhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~~-----~i~~~i~----------~~ 60 (250)
.++++||+|+||||+.+.+..++.+++|.|.++|+|... ..++. ||+. ++..++. +.
T Consensus 291 tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~ 370 (497)
T COG5265 291 TVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVG 370 (497)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHH
Confidence 478999999999999999999999999999999998632 12222 2211 1111111 11
Q ss_pred HHHH------HhCCCCCC-----CchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 61 DVME------ELGLGPNG-----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 61 ~vm~------~~~L~~~g-----~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
...+ .+.-.|.| |.+.-+-...++++++|||.+.+ +|++++|||.|+ ||..+.+++. .-++...+
T Consensus 371 aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk--~p~il~~deatsaldt~te~~iq-~~l~~~~~ 447 (497)
T COG5265 371 AAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK--NPPILILDEATSALDTHTEQAIQ-AALREVSA 447 (497)
T ss_pred HHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc--CCCEEEEehhhhHhhhhHHHHHH-HHHHHHhC
Confidence 1111 12223332 22211223345677999999999 999999999999 9999999887 77777755
Q ss_pred CCCeEEEEE
Q 025642 129 RNFNVCAVY 137 (250)
Q Consensus 129 ~~~~vi~v~ 137 (250)
...++++.|
T Consensus 448 ~rttlviah 456 (497)
T COG5265 448 GRTTLVIAH 456 (497)
T ss_pred CCeEEEEee
Confidence 444455554
No 387
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.42 E-value=9.3e-13 Score=111.72 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 87 ~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
..+++++ . +|+++++|||+. +|+.....+...+++.+++.+.+++++
T Consensus 100 ~~i~~~~-~--~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~ 147 (200)
T cd03280 100 ARILQHA-D--PDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIAT 147 (200)
T ss_pred HHHHHhC-C--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4455443 4 899999999999 999999998767888887767777655
No 388
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.41 E-value=2.7e-13 Score=140.53 Aligned_cols=127 Identities=21% Similarity=0.278 Sum_probs=85.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cccc-----Chhhhhh-------------
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS------------- 58 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~~-----~i~~~i~------------- 58 (250)
+||+|+.|||||||.+++-++..|.+|+|.++|.|... ..+.. ||+. ++|.+++
T Consensus 1169 VGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~A 1248 (1381)
T KOG0054|consen 1169 VGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEA 1248 (1381)
T ss_pred EEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHH
Confidence 79999999999999999999999999999999988743 22222 3321 3444433
Q ss_pred -----HHHHHHHhCCC------CCCCchhhhhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 -----LEDVMEELGLG------PNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 -----~~~vm~~~~L~------~~g~~~~~~~~~~--~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
+++..+....+ ++| . +... +++ +.+||||.. +++++++||.|+ +|+.+-.-+- +.++
T Consensus 1249 Le~~~Lk~~v~~~p~~Ld~~v~egG-~----N~SvGQRQL-lCLARALLr--~skILvLDEATAsVD~~TD~lIQ-~tIR 1319 (1381)
T KOG0054|consen 1249 LERCQLKDVVSSLPGGLDSEVSEGG-E----NFSVGQRQL-LCLARALLR--KSKILVLDEATASVDPETDALIQ-KTIR 1319 (1381)
T ss_pred HHHhChHHHHhhCCcCCCceecCCC-c----cCChHHHHH-HHHHHHHhc--cCCEEEEecccccCChHHHHHHH-HHHH
Confidence 33333332211 122 1 1111 223 899999999 999999999999 9999986655 5444
Q ss_pred HHHhCCCeEEEEEeccccccc
Q 025642 125 HLKSRNFNVCAVYLLDSQFIT 145 (250)
Q Consensus 125 ~l~~~~~~vi~v~l~d~~~~~ 145 (250)
+-= .+.||+.+ +|.+.
T Consensus 1320 ~~F-~dcTVltI----AHRl~ 1335 (1381)
T KOG0054|consen 1320 EEF-KDCTVLTI----AHRLN 1335 (1381)
T ss_pred HHh-cCCeEEEE----eeccc
Confidence 421 36787655 35554
No 389
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.41 E-value=3.5e-13 Score=114.61 Aligned_cols=109 Identities=16% Similarity=0.121 Sum_probs=63.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCceEEEeecCCccCCCCC-----CcccChhhhhhHHHHHHHhCCCCCCCchhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDY-----PVAMDIRELISLEDVMEELGLGPNGGLIYC 77 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~dp~~~~~~y-----~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~ 77 (250)
+++|+||||||||||+|.++|...- ..|. ...+....+ .+..++++.+. .+++..
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~~l~~~G~------~v~a~~~~~q~~~l~~~~~~~d~l~-------~~~s~~------ 87 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNVILAQAGA------PVCASSFELPPVKIFTSIRVSDDLR-------DGISYF------ 87 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHcCC------EEecCccCcccceEEEeccchhccc-------cccChH------
Confidence 5789999999999999999985531 1222 111111111 11222333221 111111
Q ss_pred hhhhhhhHHHHHHHHHhcCC--CCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 78 MEHLEDNLDDWLAEELDNYL--DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 78 ~~~~~~~ls~~la~aL~~~~--~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
.... ..+...+.... +|+++|+|||+. +|+.....+...+++.+.+.+.+++++
T Consensus 88 ----~~e~-~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiiv 144 (199)
T cd03283 88 ----YAEL-RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIIS 144 (199)
T ss_pred ----HHHH-HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 1111 11222222222 799999999999 999999887656888887767776555
No 390
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.39 E-value=1.7e-12 Score=122.92 Aligned_cols=153 Identities=13% Similarity=0.158 Sum_probs=111.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCCC----------cccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYP----------VAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y~----------~~~~i~~~i~------- 58 (250)
++||.|--|||+|-++++|.|.-++.+|+|.++|..... ..+.|- ...+|+++++
T Consensus 287 IlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~ 366 (500)
T COG1129 287 ILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRF 366 (500)
T ss_pred EEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhh
Confidence 689999999999999999999999999999999975321 224441 2344555554
Q ss_pred --------------HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025642 59 --------------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (250)
Q Consensus 59 --------------~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~l 122 (250)
++++.+.+++.............. +++++.||+.|.. +|++||+||||. +|.-++.++. ++
T Consensus 367 ~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~--~p~vLilDEPTRGIDVGAK~eIy-~l 443 (500)
T COG1129 367 SRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLAT--DPKVLILDEPTRGIDVGAKAEIY-RL 443 (500)
T ss_pred ccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhc--CCCEEEECCCCcCcccchHHHHH-HH
Confidence 455566666643321111112222 2344899999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhH
Q 025642 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (250)
Q Consensus 123 l~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~ 163 (250)
+++++++|.+|+++. ..+.+....+++++....+.+.
T Consensus 444 i~~lA~~G~ail~iS----SElpEll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 444 IRELAAEGKAILMIS----SELPELLGLSDRILVMREGRIV 480 (500)
T ss_pred HHHHHHCCCEEEEEe----CChHHHHhhCCEEEEEECCEEE
Confidence 999999999998764 6676666666766655555443
No 391
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.37 E-value=2e-12 Score=124.84 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=86.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC-C-ccCCCCCCcccChhhhh------------hHHHHHHHhCCCC
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P-AAENFDYPVAMDIRELI------------SLEDVMEELGLGP 70 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-p-~~~~~~y~~~~~i~~~i------------~~~~vm~~~~L~~ 70 (250)
+.|.||||||||||+|+|+|+.+.-+|+|..-... . --..-||.|.-+.||.+ .+.+++.+.||++
T Consensus 422 llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~ 501 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGD 501 (604)
T ss_pred EEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHH
Confidence 56999999999999999999999989998764111 0 00112332222334333 2677888888887
Q ss_pred CCCch-----hhhh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 71 NGGLI-----YCME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 71 ~g~~~-----~~~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
..... .... ...+++++++||.+.+ +|+++++||-|+ +|..+...++ +++++-- .+.++|.|
T Consensus 502 L~~rl~~~~~W~~vLS~GEqQRlafARilL~--kP~~v~LDEATsALDe~~e~~l~-q~l~~~l-p~~tvISV 570 (604)
T COG4178 502 LAERLDEEDRWDRVLSGGEQQRLAFARLLLH--KPKWVFLDEATSALDEETEDRLY-QLLKEEL-PDATVISV 570 (604)
T ss_pred HHHHHhccCcHhhhcChhHHHHHHHHHHHHc--CCCEEEEecchhccChHHHHHHH-HHHHhhC-CCCEEEEe
Confidence 42111 0111 1224566999999999 999999999999 9999998877 5444311 36788766
No 392
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.37 E-value=1.4e-11 Score=104.58 Aligned_cols=39 Identities=5% Similarity=0.000 Sum_probs=33.6
Q ss_pred HHHHHHH----hcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 87 DWLAEEL----DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 87 ~~la~aL----~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+.||+++ +. +|+++|+|||++ +|+..+..+. ++++++.+
T Consensus 118 ~~ia~al~~~~~~--~p~illlDEP~~glD~~~~~~~~-~~l~~~~~ 161 (198)
T cd03276 118 STVCLLLSLWEVM--ESPFRCLDEFDVFMDMVNRKIST-DLLVKEAK 161 (198)
T ss_pred HHHHHHHHHhccc--CCCEEEecCcccccCHHHHHHHH-HHHHHHHh
Confidence 7888888 46 999999999999 9999999988 77777643
No 393
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.36 E-value=3.6e-12 Score=132.34 Aligned_cols=130 Identities=19% Similarity=0.214 Sum_probs=93.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhh---------HHHHHHHhCCCC----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP---- 70 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~---------~~~vm~~~~L~~---- 70 (250)
.++|+||-|||||+|+.+|.|.++..+|+|.+.|.-.....-++-++-+|||+|- ++++++...|.+
T Consensus 549 lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~ 628 (1381)
T KOG0054|consen 549 LVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEI 628 (1381)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhh
Confidence 4789999999999999999999999999999987521111122334567888876 566666544432
Q ss_pred --CCCchh----hhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 71 --NGGLIY----CMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 71 --~g~~~~----~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
.|.+-. ..+.. .+++++.+|||+.. ++|+++||.|.+ +|....+.++++.++.+-+ ++|++.|
T Consensus 629 Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~--~adIYLLDDplSAVDahvg~~if~~ci~~~L~-~KT~ILV 699 (1381)
T KOG0054|consen 629 LPFGDLTEIGERGINLSGGQKQRISLARAVYQ--DADIYLLDDPLSAVDAHVGKHIFEECIRGLLR-GKTVILV 699 (1381)
T ss_pred cCCCCcceecCCccCCcHhHHHHHHHHHHHhc--cCCEEEEcCcchhhhHhhhHHHHHHHHHhhhc-CCEEEEE
Confidence 221100 01111 23466999999999 999999999999 9999999999888866544 5665555
No 394
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.31 E-value=2.8e-12 Score=107.58 Aligned_cols=113 Identities=15% Similarity=0.197 Sum_probs=66.3
Q ss_pred EEEEcCCCCcHHHHHHHHH-cCCCCCCceEEEeecCCcc-CCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 5 QLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~-g~l~~~~G~i~i~~~dp~~-~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
++|.||||+||||++|.++ ..+.+..|... |+. -.+++. ++++..++...+... ....+.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v-----~a~~~~~~~~-----------d~il~~~~~~d~~~~--~~s~fs 63 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFV-----PAESAELPVF-----------DRIFTRIGASDSLAQ--GLSTFM 63 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCe-----eehheEeccc-----------ceEEEEeCCCCchhc--cccHHH
Confidence 6799999999999999998 33333444321 111 112221 111222222221100 012333
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025642 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (250)
Q Consensus 83 ~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~vi~v 136 (250)
..+ ..+++++....+|+++|+|||+. +|+.....+...+++.+.+. +.+++++
T Consensus 64 ~~~-~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~ 118 (185)
T smart00534 64 VEM-KETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFA 118 (185)
T ss_pred HHH-HHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 334 44555555444899999999999 99998888876888888764 6665443
No 395
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.31 E-value=6.7e-12 Score=106.57 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=63.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-CCCCceEEEeecCCcc-CCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l-~~~~G~i~i~~~dp~~-~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
.++|+||||||||||++++++.. .+..|.. -|+. ..+++... ++..++.... ....+..+
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~-----~~~~~~~i~~~dq-----------i~~~~~~~d~--i~~~~s~~ 92 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAVLLAQIGCF-----VPAESASIPLVDR-----------IFTRIGAEDS--ISDGRSTF 92 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHHcCCC-----ccccccccCCcCE-----------EEEEecCccc--ccCCceeH
Confidence 57899999999999999999532 2233321 1111 12222110 0000111000 00001122
Q ss_pred hhhH-HHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 82 EDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 82 ~~~l-s~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
...+ +...+.+... +|+++|+|||+. +|+.....+...+++.+.+.+.+++++
T Consensus 93 ~~e~~~l~~i~~~~~--~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~ 147 (202)
T cd03243 93 MAELLELKEILSLAT--PRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFA 147 (202)
T ss_pred HHHHHHHHHHHHhcc--CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 2222 1222233345 899999999999 999998888757788887667777655
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.1e-11 Score=113.11 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEee------cCC-ccCCCCCCcccChhhhh---------hHHHHHHHh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN------LDP-AAENFDYPVAMDIRELI---------SLEDVMEEL 66 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~------~dp-~~~~~~y~~~~~i~~~i---------~~~~vm~~~ 66 (250)
--++|+||||.|||||++.+.|-+.|..|+.+-+- .|- +++.+.- .-+.-+++ .++..+-.+
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~--Eetp~EyLqr~FNlpyq~ARK~LG~f 691 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNG--EETPVEYLQRKFNLPYQEARKQLGTF 691 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhcc--ccCHHHHHHHhcCCChHHHHHHhhhh
Confidence 35799999999999999999999999998764321 000 0011100 00111111 144555566
Q ss_pred CCCCCCCchhhhhhhhh--hHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 67 GLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 67 ~L~~~g~~~~~~~~~~~--~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
||....-.+. +..+.. +-++++|.--.. .|++||+||||+ ||+.+...+. +.|+.+ +..||+|.
T Consensus 692 GL~sHAHTik-ikdLSGGQKaRValaeLal~--~PDvlILDEPTNNLDIESIDALa-EAIney---~GgVi~Vs 758 (807)
T KOG0066|consen 692 GLASHAHTIK-IKDLSGGQKARVALAELALG--GPDVLILDEPTNNLDIESIDALA-EAINEY---NGGVIMVS 758 (807)
T ss_pred hhhhccceEe-eeecCCcchHHHHHHHHhcC--CCCEEEecCCCCCcchhhHHHHH-HHHHhc---cCcEEEEe
Confidence 6654432111 122222 223777765555 999999999999 9999987766 555554 23455553
No 397
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.27 E-value=3.4e-11 Score=113.88 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 85 LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 85 ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
++.+||++|.. +|++|++||||+ ||+.+...+- +.+.+.
T Consensus 228 mR~aLAr~Lf~--kP~LLLLDEPtnhLDleA~~wLe-e~L~k~ 267 (614)
T KOG0927|consen 228 MRAALARALFQ--KPDLLLLDEPTNHLDLEAIVWLE-EYLAKY 267 (614)
T ss_pred HHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHHH-HHHHhc
Confidence 34999999999 999999999999 9999985544 444443
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.23 E-value=6.6e-11 Score=101.67 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=33.5
Q ss_pred HHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C-CeEEEE
Q 025642 91 EELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N-FNVCAV 136 (250)
Q Consensus 91 ~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~-~~vi~v 136 (250)
++++. +|+++++|||++ +|+.+...++ +++.++.++ | .+++++
T Consensus 143 ~~~~~--~p~llllDEP~~~LD~~~~~~i~-~~l~~~~~~~g~~~viii 188 (213)
T cd03277 143 LQELT--RCPFRVVDEINQGMDPTNERKVF-DMLVETACKEGTSQYFLI 188 (213)
T ss_pred HHhcc--CCCEEEEecccccCCHHHHHHHH-HHHHHHhhcCCCceEEEE
Confidence 33346 999999999999 9999999998 888777655 5 345544
No 399
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.22 E-value=5.3e-11 Score=97.75 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=65.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCC-CcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y-~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
.++|+|||||||||+++.+....-...|.+... .+. ..++ .+...+. . +....+ -.+| .
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---~~g~~~~~~~~~----~--i~~~~~--lS~G--------~ 82 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---KAGCIVAAVSAE----L--IFTRLQ--LSGG--------E 82 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---cCCCcceeeEEE----E--ehheee--cccc--------H
Confidence 578999999999999999876654444433321 110 0111 1111100 0 111111 1111 1
Q ss_pred hhHHHHHHHHHhcCC--CCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 83 DNLDDWLAEELDNYL--DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 83 ~~ls~~la~aL~~~~--~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
.+. ..+++++.... +|+++++|||+. +|+.....+. +.+.++.+++.+++++
T Consensus 83 ~~~-~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~-~~l~~~~~~~~~vii~ 137 (162)
T cd03227 83 KEL-SALALILALASLKPRPLYILDEIDRGLDPRDGQALA-EAILEHLVKGAQVIVI 137 (162)
T ss_pred HHH-HHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence 223 77888887522 689999999999 9999999988 5555554446666544
No 400
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.22 E-value=4.3e-11 Score=102.81 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=61.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc--CCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g--~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
.++|.||||+|||||+|.+.. .+ +..|.+.... . -.++|.... +.. ++........+..+
T Consensus 31 ~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-~---~~~~~~d~i-----------~~~--l~~~~si~~~~S~f 92 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-S---ATIGLVDKI-----------FTR--MSSRESVSSGQSAF 92 (213)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-C---cEEeeeeee-----------eee--eCCccChhhccchH
Confidence 478999999999999999983 33 4445443211 0 112221100 000 01111010011223
Q ss_pred hhhH-HHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 82 EDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 82 ~~~l-s~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
...+ ++.++.+++. +++++|+|||+. +|+.....+...+++++.+.
T Consensus 93 ~~el~~l~~~l~~~~--~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~ 140 (213)
T cd03281 93 MIDLYQVSKALRLAT--RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKR 140 (213)
T ss_pred HHHHHHHHHHHHhCC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc
Confidence 3333 1455556666 999999999999 99987666665788888654
No 401
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.22 E-value=1.1e-10 Score=124.13 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=53.3
Q ss_pred HHHHHhCCCCC-CCchhhhhhhhhhHHHHHHHHHh---cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025642 61 DVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELD---NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (250)
Q Consensus 61 ~vm~~~~L~~~-g~~~~~~~~~~~~ls~~la~aL~---~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~ 135 (250)
++++.+|++.. .+.....-...+.+++.||++|+ . +|+++|||||++ ||+.....++ ++++++++.|.+|++
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~--~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~G~TVIi 867 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSK--KPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQGHTVVI 867 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCC--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEE
Confidence 35667777653 12111111112334499999997 5 899999999999 9999999999 999999877888876
Q ss_pred EE
Q 025642 136 VY 137 (250)
Q Consensus 136 v~ 137 (250)
+.
T Consensus 868 Is 869 (1809)
T PRK00635 868 IE 869 (1809)
T ss_pred Ee
Confidence 63
No 402
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.20 E-value=1e-10 Score=103.95 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
..++++||||||||||++.++|.+.|..|++.+.|.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v 149 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKV 149 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEe
Confidence 35799999999999999999999999999999998775
No 403
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.20 E-value=6e-11 Score=99.18 Aligned_cols=51 Identities=10% Similarity=0.056 Sum_probs=40.6
Q ss_pred HHHHHHHHHhc--CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 85 LDDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 85 ls~~la~aL~~--~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
.+..++++++. ..+|+++++|||++ +|+.....+. +.++++.+.|.+++++
T Consensus 101 ~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~-~~L~~~~~~g~tiIii 154 (178)
T cd03239 101 SLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVS-DMIKEMAKHTSQFIVI 154 (178)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 33888888752 12899999999999 9999999988 7888876666777655
No 404
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.19 E-value=6.7e-11 Score=100.38 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=86.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccC-------CCCC-----------CcccChhhhhhHHHHHHHh
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDY-----------PVAMDIRELISLEDVMEEL 66 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~-------~~~y-----------~~~~~i~~~i~~~~vm~~~ 66 (250)
..++|.||||||||+|+++|-.-.-.|.|.+.|.+|-.+ .+.| .-++.+.-.+++++.+.-.
T Consensus 43 cLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV 122 (291)
T KOG2355|consen 43 CLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGV 122 (291)
T ss_pred EEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHHhhc
Confidence 468999999999999999997666679999999988331 1222 0011222234455544433
Q ss_pred CC-CCCC----------CchhhhhhhhhhH--HHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCC
Q 025642 67 GL-GPNG----------GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNF 131 (250)
Q Consensus 67 ~L-~~~g----------~~~~~~~~~~~~l--s~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~-~~~~ 131 (250)
+- .|.. .+...|......+ ++.|+..|.+ .=++|++||-|- ||..++..++ +++++-. ++|.
T Consensus 123 ~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~--PfkVLLLDEVTVDLDVlARadLL-eFlkeEce~Rga 199 (291)
T KOG2355|consen 123 GGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLK--PFKVLLLDEVTVDLDVLARADLL-EFLKEECEQRGA 199 (291)
T ss_pred cCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccc--ceeEEEeeeeEeehHHHHHHHHH-HHHHHHHhhcCc
Confidence 32 1210 0111223333222 2888888887 679999999999 9999999999 7776654 4588
Q ss_pred eEEE-EEecc
Q 025642 132 NVCA-VYLLD 140 (250)
Q Consensus 132 ~vi~-v~l~d 140 (250)
+|+. +|++|
T Consensus 200 tIVYATHIFD 209 (291)
T KOG2355|consen 200 TIVYATHIFD 209 (291)
T ss_pred EEEEEeeecc
Confidence 8764 45555
No 405
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=8.7e-11 Score=110.54 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=81.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCc--ccC-----h--hhhh----------hHHHHHHH
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPV--AMD-----I--RELI----------SLEDVMEE 65 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~--~~~-----i--~~~i----------~~~~vm~~ 65 (250)
++++|+||+||||+++++.|-++|.+|.+.+.. +..+.|+. .++ + -+.. .++.-+..
T Consensus 393 i~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~----r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~ 468 (582)
T KOG0062|consen 393 ISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP----RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGS 468 (582)
T ss_pred hheeccCchhHHHHHHHHhccCCcccceeeecc----cceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 468999999999999999999999999887653 22344421 111 0 1111 15666777
Q ss_pred hCCCCCCCchhhhhhhhhhH--HHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 66 LGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 66 ~~L~~~g~~~~~~~~~~~~l--s~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+|+...-+... +..+...+ ++++|..... +|.+|+|||||+ ||..+-.. +.+.++..+-.||+|.
T Consensus 469 ~Gl~g~la~~s-i~~LSGGQKsrvafA~~~~~--~PhlLVLDEPTNhLD~dsl~A----L~~Al~~F~GGVv~VS 536 (582)
T KOG0062|consen 469 FGLSGELALQS-IASLSGGQKSRVAFAACTWN--NPHLLVLDEPTNHLDRDSLGA----LAKALKNFNGGVVLVS 536 (582)
T ss_pred cCCCchhhhcc-ccccCCcchhHHHHHHHhcC--CCcEEEecCCCccccHHHHHH----HHHHHHhcCCcEEEEE
Confidence 88865543322 33333333 3788877777 999999999999 99887744 4455666555566664
No 406
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.16 E-value=9.8e-11 Score=99.77 Aligned_cols=141 Identities=18% Similarity=0.317 Sum_probs=91.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC----CceEEEeecC-----Ccc------CCCCC-Ccc----cC----h-hhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLD-----PAA------ENFDY-PVA----MD----I-RELIS 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~----~G~i~i~~~d-----p~~------~~~~y-~~~----~~----i-~~~i~ 58 (250)
+-|++|.+|||||-..|+|+|..+.. .-+..+++.| |.. ++++. +++ +| + ++.+.
T Consensus 35 i~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq 114 (330)
T COG4170 35 IRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQ 114 (330)
T ss_pred eeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHh
Confidence 46899999999999999999998642 2223334433 211 12221 111 11 1 11111
Q ss_pred ---------------------HHHHHHHhCCCCCCCchhhhhhhhh------hHHHHHHHHHhcCCCCCEEEEeCCCc-c
Q 025642 59 ---------------------LEDVMEELGLGPNGGLIYCMEHLED------NLDDWLAEELDNYLDDDYLVFDCPGQ-I 110 (250)
Q Consensus 59 ---------------------~~~vm~~~~L~~~g~~~~~~~~~~~------~ls~~la~aL~~~~~~~~lllDEPt~-L 110 (250)
+-+++.++|+....... ..+.. .+.+.||.|++. .|+++|.||||+ +
T Consensus 115 ~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM---~SYP~ElTeGE~QKVMIA~A~An--qPrLLIADEPTN~~ 189 (330)
T COG4170 115 NIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM---RSYPYELTEGECQKVMIAIALAN--QPRLLIADEPTNSM 189 (330)
T ss_pred hCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH---HhCcchhccCcceeeeeehhhcc--CCceEeccCCCccc
Confidence 44667777877654332 22222 233889999999 999999999999 9
Q ss_pred CHHhHHHHHHHHHHHHHhC-CCeEEEEEeccccccccHHHHHHhh
Q 025642 111 ELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGC 154 (250)
Q Consensus 111 D~~~~~~i~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~ 154 (250)
|+.++.+++ +++.++++. |.+++.+ +|.+...+..++.+
T Consensus 190 e~~Tq~Qif-RLLs~mNQn~~TtILL~----s~Dl~~is~W~d~i 229 (330)
T COG4170 190 EPTTQAQIF-RLLSRLNQNSNTTILLI----SHDLQMISQWADKI 229 (330)
T ss_pred CccHHHHHH-HHHHHhhccCCceEEEE----cccHHHHHHHhhhe
Confidence 999999999 899999875 6666544 46666556665543
No 407
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.15 E-value=1.2e-10 Score=99.51 Aligned_cols=114 Identities=15% Similarity=0.203 Sum_probs=66.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
+++|+||||+||||+++.+++..-- .-|- .+ |+. ...+.+ .++++..++...+... ....+.
T Consensus 31 ~~~l~G~n~~GKstll~~i~~~~~la~~G~-~v----pa~-----~~~l~~-----~d~I~~~~~~~d~~~~--~~S~fs 93 (204)
T cd03282 31 FHIITGPNMSGKSTYLKQIALLAIMAQIGC-FV----PAE-----YATLPI-----FNRLLSRLSNDDSMER--NLSTFA 93 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHcCC-Cc----chh-----hcCccC-----hhheeEecCCccccch--hhhHHH
Confidence 4789999999999999999876411 0110 00 211 111122 2234444454432111 112233
Q ss_pred hhHH-HHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 83 DNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 83 ~~ls-~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
..++ ...+.+++. +|+++++|||+. +|+.....+...+++.+.+.+.+++++
T Consensus 94 ~e~~~~~~il~~~~--~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~ 147 (204)
T cd03282 94 SEMSETAYILDYAD--GDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFA 147 (204)
T ss_pred HHHHHHHHHHHhcC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3331 222223345 899999999999 999887777768899988777776544
No 408
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.13 E-value=3e-10 Score=96.87 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCCCEEEEeCCC-----c-cCHHhHHHHHHHHHHHHHh
Q 025642 87 DWLAEELDNYLDDDYLVFDCPG-----Q-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 87 ~~la~aL~~~~~~~~lllDEPt-----~-LD~~~~~~i~~~ll~~l~~ 128 (250)
.|||+++.. +|+++++|||+ + +|+.....+. ++++++++
T Consensus 161 ~~ia~~l~~--~p~~~~ldEp~~~~~~~~ld~~~~~~~~-~~~~~~~~ 205 (215)
T PTZ00132 161 LWLARRLTN--DPNLVFVGAPALAPEEIQIDPELVAQAE-KELQAAAN 205 (215)
T ss_pred HHHHHHHhh--cccceecCCcccCCCccccCHHHHHHHH-HHHHHHhh
Confidence 799999999 99999999999 9 9999999998 88888864
No 409
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.11 E-value=4.4e-10 Score=96.78 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=58.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCceEEEeecCCc-cCCCCCC----cccChhhhhhHHHHHHHhCCCCCCCchhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPA-AENFDYP----VAMDIRELISLEDVMEELGLGPNGGLIYC 77 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~dp~-~~~~~y~----~~~~i~~~i~~~~vm~~~~L~~~g~~~~~ 77 (250)
+++|+|||||||||+++.+++..-. ..|.. -|+ ...+++. +.+++.+.+. .+
T Consensus 32 ~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~-----vp~~~~~i~~~~~i~~~~~~~~~ls---------~g-------- 89 (216)
T cd03284 32 ILLITGPNMAGKSTYLRQVALIALLAQIGSF-----VPASKAEIGVVDRIFTRIGASDDLA---------GG-------- 89 (216)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHhccCCe-----eccccceecceeeEeccCCchhhhc---------cC--------
Confidence 4789999999999999999864311 11211 111 1223331 1122222110 01
Q ss_pred hhhhhhhHHHHHHHHHhcCCCCCEEEEeCC---Cc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025642 78 MEHLEDNLDDWLAEELDNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (250)
Q Consensus 78 ~~~~~~~ls~~la~aL~~~~~~~~lllDEP---t~-LD~~~~~~i~~~ll~~l~~~-~~~vi~v 136 (250)
...+...+ ..++.++....+|+++|+||| |+ +|... ....+++.+.+. +.+++++
T Consensus 90 ~s~f~~e~-~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~---~~~~il~~l~~~~~~~vi~~ 149 (216)
T cd03284 90 RSTFMVEM-VETANILNNATERSLVLLDEIGRGTSTYDGLS---IAWAIVEYLHEKIGAKTLFA 149 (216)
T ss_pred cchHHHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHH---HHHHHHHHHHhccCCcEEEE
Confidence 12233333 455555543338999999999 77 77654 233667777665 6666544
No 410
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=2.3e-09 Score=109.12 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhcC-CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 84 NLDDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 84 ~ls~~la~aL~~~-~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
.+++.||++|..- .+|+++|||||++ ||+.....+. ++++++.+.|.+++++.
T Consensus 834 ~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~G~TVIvi~ 888 (924)
T TIGR00630 834 AQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQGNTVVVIE 888 (924)
T ss_pred HHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 3448999999851 1489999999999 9999999999 88999887788887663
No 411
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.06 E-value=6e-10 Score=96.31 Aligned_cols=122 Identities=12% Similarity=0.166 Sum_probs=69.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
+++|.||||||||||++.++-..- ...|- .-|+.. ..+. -+++++.++++.+.. ......+.
T Consensus 32 ~~~l~G~n~~GKstll~~i~~~~~la~~g~-----~vpa~~-----~~~~-----~~~~il~~~~l~d~~--~~~lS~~~ 94 (222)
T cd03285 32 FLIITGPNMGGKSTYIRQIGVIVLMAQIGC-----FVPCDS-----ADIP-----IVDCILARVGASDSQ--LKGVSTFM 94 (222)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHhCC-----CcCccc-----EEEe-----ccceeEeeeccccch--hcCcChHH
Confidence 578999999999999999873200 00110 001110 0000 133455566665432 11123344
Q ss_pred hhHHHHHHHHH--hcCCCCCEEEEeCC---Cc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEEeccccccccHHHHHHh
Q 025642 83 DNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISG 153 (250)
Q Consensus 83 ~~ls~~la~aL--~~~~~~~~lllDEP---t~-LD~~~~~~i~~~ll~~l~~-~~~~vi~v~l~d~~~~~d~~~~~s~ 153 (250)
.++ ..+++++ +. +|+++|+||| |+ +|...... .+++.+.+ .+.+++++ +|+ .+..++++.
T Consensus 95 ~e~-~~~a~il~~~~--~~sLvLLDEp~~gT~~lD~~~~~~---~il~~l~~~~~~~vlis----TH~-~el~~~~~~ 161 (222)
T cd03285 95 AEM-LETAAILKSAT--ENSLIIIDELGRGTSTYDGFGLAW---AIAEYIATQIKCFCLFA----THF-HELTALADE 161 (222)
T ss_pred HHH-HHHHHHHHhCC--CCeEEEEecCcCCCChHHHHHHHH---HHHHHHHhcCCCeEEEE----ech-HHHHHHhhc
Confidence 444 6777777 45 8999999999 88 99888754 44566654 35665443 453 444555543
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.05 E-value=4e-09 Score=107.66 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhcCCCC---CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 84 NLDDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~---~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
.+++.||++|.. +| +++|+|||++ ||+.....++ ++++++.+.|.+|+++.
T Consensus 836 kQRl~LAraL~~--~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~G~TVIiit 890 (943)
T PRK00349 836 AQRVKLAKELSK--RSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDKGNTVVVIE 890 (943)
T ss_pred HHHHHHHHHHhc--CCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 345899999998 88 9999999999 9999999999 88999877788887664
No 413
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.02 E-value=8e-10 Score=110.95 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=67.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC-CCCCCceEEEeecCCccC--CCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~-l~~~~G~i~i~~~dp~~~--~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~ 80 (250)
.++|.||||+|||||++.++|. +.+..|-. -|+.. .++|...+ .. .+++.......+..
T Consensus 324 ~liItGpNg~GKSTlLK~i~~~~l~aq~G~~-----Vpa~~~~~~~~~d~i--~~-----------~i~~~~si~~~LSt 385 (771)
T TIGR01069 324 VLAITGPNTGGKTVTLKTLGLLALMFQSGIP-----IPANEHSEIPYFEEI--FA-----------DIGDEQSIEQNLST 385 (771)
T ss_pred EEEEECCCCCCchHHHHHHHHHHHHHHhCCC-----ccCCccccccchhhe--ee-----------ecChHhHHhhhhhH
Confidence 5789999999999999999998 45555521 12222 23331110 00 01111001111223
Q ss_pred hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 81 ~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
+...+ ..++..+....+|+++|+|||+. +|+.....+...+++.+.+.|.+++++
T Consensus 386 fS~~m-~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viit 441 (771)
T TIGR01069 386 FSGHM-KNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLIT 441 (771)
T ss_pred HHHHH-HHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 33333 22333333223899999999999 999999998658899987777766544
No 414
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.00 E-value=1.9e-09 Score=93.28 Aligned_cols=115 Identities=15% Similarity=0.176 Sum_probs=69.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g-~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
.++|+||||+||||+++.+++ .+.+..|...... . -.++|...+ +.+++ ....+......+.
T Consensus 33 ~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~---~~~~~~~~i-----------~~~~~--~~d~~~~~~StF~ 95 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S---ATLSIFDSV-----------LTRMG--ASDSIQHGMSTFM 95 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c---eEEeccceE-----------EEEec--CccccccccchHH
Confidence 468999999999999999999 6677778754321 1 113332111 00011 0000000123444
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025642 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (250)
Q Consensus 83 ~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~vi~v 136 (250)
..+ ..++..+...++++++|+|||+. .++.....+...+++.+.+. +.+++++
T Consensus 96 ~e~-~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~ 150 (222)
T cd03287 96 VEL-SETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFV 150 (222)
T ss_pred HHH-HHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEE
Confidence 444 44555554444889999999988 88776666555788888765 6565444
No 415
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.99 E-value=2.7e-09 Score=101.87 Aligned_cols=126 Identities=16% Similarity=0.193 Sum_probs=79.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC--------Ccc---------CCCCCC-----cccChhhhhhHHHH
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--------PAA---------ENFDYP-----VAMDIRELISLEDV 62 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d--------p~~---------~~~~y~-----~~~~i~~~i~~~~v 62 (250)
+.|.||||||||+|+|.++|+.+..+|++..-... |++ +.+-|| ++....+...+...
T Consensus 464 LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~ 543 (659)
T KOG0060|consen 464 LLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRI 543 (659)
T ss_pred EEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHH
Confidence 57999999999999999999999888888653211 111 122222 01001111124444
Q ss_pred HHHhCCCCC----CCch-----hhhh--hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025642 63 MEELGLGPN----GGLI-----YCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (250)
Q Consensus 63 m~~~~L~~~----g~~~-----~~~~--~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~ 130 (250)
++..+|++. ||.. .=++ ...++++.++||-+.+ +|++-|+||-|+ ++......+. +. +++.|
T Consensus 544 Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~--kPk~AiLDE~TSAv~~dvE~~~Y-r~---~r~~g 617 (659)
T KOG0060|consen 544 LENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH--KPKFAILDECTSAVTEDVEGALY-RK---CREMG 617 (659)
T ss_pred HHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhc--CCceEEeechhhhccHHHHHHHH-HH---HHHcC
Confidence 555555431 2221 0011 2335667999999998 999999999999 9998886666 44 44558
Q ss_pred CeEEEE
Q 025642 131 FNVCAV 136 (250)
Q Consensus 131 ~~vi~v 136 (250)
.|.+.|
T Consensus 618 iT~iSV 623 (659)
T KOG0060|consen 618 ITFISV 623 (659)
T ss_pred CeEEEe
Confidence 888776
No 416
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.97 E-value=3.7e-09 Score=97.77 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=88.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC--------CCCCCceEEEeecCCccC-CCCCCcccC---hhhhhh--------HHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH--------CETVRRTMHIVNLDPAAE-NFDYPVAMD---IRELIS--------LEDVM 63 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~--------l~~~~G~i~i~~~dp~~~-~~~y~~~~~---i~~~i~--------~~~vm 63 (250)
+++|+|++||||||++++++|. ++|++|.|.+.-...++- .-.|.+.++ +-+.+- ..+++
T Consensus 411 vvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveIL 490 (593)
T COG2401 411 VVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEIL 490 (593)
T ss_pred eEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHHHH
Confidence 5789999999999999999986 478899998743222110 011223222 222221 66788
Q ss_pred HHhCCCCCCCchhhhhhhhhhH--HHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEE
Q 025642 64 EELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVY 137 (250)
Q Consensus 64 ~~~~L~~~g~~~~~~~~~~~~l--s~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~vi~v~ 137 (250)
++.|++.---.+.....+...+ +..||+.++. .|.+++.||=.+ ||..+...+. +-+.++++ .|.|+++++
T Consensus 491 nraGlsDAvlyRr~f~ELStGQKeR~KLAkllae--rpn~~~iDEF~AhLD~~TA~rVA-rkiselaRe~giTlivvT 565 (593)
T COG2401 491 NRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE--RPNVLLIDEFAAHLDELTAVRVA-RKISELAREAGITLIVVT 565 (593)
T ss_pred HhhccchhhhhhccHhhcCcchHHHHHHHHHHhc--CCCcEEhhhhhhhcCHHHHHHHH-HHHHHHHHHhCCeEEEEe
Confidence 8888876321111223333222 3889999999 999999999999 9999999999 44555654 588877664
No 417
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.91 E-value=1.6e-08 Score=86.57 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=41.8
Q ss_pred HHHHHHHhCCCCCCCchhhhhhhhhhHH-HHH--HHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEE
Q 025642 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD-DWL--AEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (250)
Q Consensus 59 ~~~vm~~~~L~~~g~~~~~~~~~~~~ls-~~l--a~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi 134 (250)
+.+.+...++.+. ....++.+ ..| .-|+......++++||||.+ ||...+..+. ++++++.+. .-++
T Consensus 123 ~~~~l~~~~i~~~-------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~~-~Q~i 193 (220)
T PF02463_consen 123 LEELLPEVGISPE-------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLA-DLLKELSKQ-SQFI 193 (220)
T ss_dssp HHHHHHCTTTTTT-------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHH-HHHHHHTTT-SEEE
T ss_pred ccccccccccccc-------ccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc-cccc
Confidence 5566777777765 11222221 222 22344444779999999999 9999999988 888887543 4454
Q ss_pred EE
Q 025642 135 AV 136 (250)
Q Consensus 135 ~v 136 (250)
++
T Consensus 194 i~ 195 (220)
T PF02463_consen 194 IT 195 (220)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 418
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.89 E-value=1.6e-08 Score=87.79 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=31.3
Q ss_pred CCCEEEEeCCCc-c----CHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 98 DDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 98 ~~~~lllDEPt~-L----D~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+|+++++|||++ + |+...+.+. ++++.++++|.+++++|
T Consensus 117 ~~~~lVIDe~t~~l~~~~d~~~~~~l~-~~l~~l~~~g~tvi~t~ 160 (230)
T PRK08533 117 EKDVIIIDSLSSLISNDASEVAVNDLM-AFFKRISSLNKVIILTA 160 (230)
T ss_pred CCCEEEEECccHHhcCCcchHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 799999999999 7 666667777 78888877777776665
No 419
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.89 E-value=4.9e-09 Score=97.23 Aligned_cols=126 Identities=15% Similarity=0.173 Sum_probs=75.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCc-eEEEeecCCccCCCCCCcccChhhhhh------------HHHHHHHhCCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELIS------------LEDVMEELGLGP 70 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~i~i~~~dp~~~~~~y~~~~~i~~~i~------------~~~vm~~~~L~~ 70 (250)
+++.+|.||.||||++++++|.++|++| ++-..|.....+.+.-....++|+.+. +.++|+-+.+..
T Consensus 369 iivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~ 448 (592)
T KOG0063|consen 369 IIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIEN 448 (592)
T ss_pred eEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHH
Confidence 4678999999999999999999999876 443333222112121111223444332 445555544433
Q ss_pred CCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeE
Q 025642 71 NGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNV 133 (250)
Q Consensus 71 ~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~-~~~~~v 133 (250)
--++-. ..... +.++++++..+.. .+++++.|||.+ +|...+.... ..+++.- ..+++-
T Consensus 449 i~dqev-q~lSggelQRval~KOGGK--pAdvYliDEpsAylDSeQRi~As-kvikRfilhakkta 510 (592)
T KOG0063|consen 449 IIDQEV-QGLSGGELQRVALALCLGK--PADVYLIDEPSAYLDSEQRIIAS-KVIKRFILHAKKTA 510 (592)
T ss_pred HHhHHh-hcCCchhhHHHHHHHhcCC--CCceEEecCchhhcChHHHHHHH-HHHHHHHHhccchh
Confidence 210000 00011 1245888888888 899999999999 9999987776 5555543 334443
No 420
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.88 E-value=6.3e-09 Score=83.24 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=66.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhh---hhhh
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYC---MEHL 81 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~---~~~~ 81 (250)
++|.||||+||||+++.+++...+.++.+.+.+.+..... ..... ......+...+...... ....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 70 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE--------LTERL---IGESLKGALDNLIIVFATADDPAA 70 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH--------HHHHH---hhhhhccccccEEEEEcCCCCCcH
Confidence 6899999999999999999998888888888765432110 00000 00111110000000000 0001
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHh---------HHHHHHHHHHHHHhCCCeEEEEE
Q 025642 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFT---------HVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~---------~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
......+.+.+... +++++++|||+. .+... ....+.++.+..++.+.+++++.
T Consensus 71 ~~~~~~~~~~~~~~--~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~ 134 (165)
T cd01120 71 ARLLSKAERLRERG--GDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTL 134 (165)
T ss_pred HHHHHHHHHHHhCC--CCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEE
Confidence 11111334445555 899999999997 54432 12334367767666688877765
No 421
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.87 E-value=3.9e-09 Score=99.95 Aligned_cols=124 Identities=17% Similarity=0.263 Sum_probs=72.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEE--------eecCCc------cCCCCCCccc--------C------hhhh
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHI--------VNLDPA------AENFDYPVAM--------D------IREL 56 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i--------~~~dp~------~~~~~y~~~~--------~------i~~~ 56 (250)
+.|+||||||||+|+|++.|+.+...|..++ .-+.|. ++.+-||... + +-+.
T Consensus 511 LLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~ 590 (728)
T KOG0064|consen 511 LLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDI 590 (728)
T ss_pred EEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHH
Confidence 5699999999999999999998877776544 112220 1222232210 0 1111
Q ss_pred hhHHHHHHHhC-CCCCCCchhhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025642 57 ISLEDVMEELG-LGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (250)
Q Consensus 57 i~~~~vm~~~~-L~~~g~~~~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~ 132 (250)
+.++.++++-+ +.- ...-.+.+ ..+++..+||.+.+ +|+|-++||-|+ +-+.....++ +..+..|.+
T Consensus 591 v~L~~i~qr~~g~da---~~dWkd~LsgGekQR~~mARm~yH--rPkyalLDEcTsAvsidvE~~i~----~~ak~~gi~ 661 (728)
T KOG0064|consen 591 VHLEHILQREGGWDA---VRDWKDVLSGGEKQRMGMARMFYH--RPKYALLDECTSAVSIDVEGKIF----QAAKDAGIS 661 (728)
T ss_pred hhHHHHHHhccChhh---hccHHhhccchHHHHHHHHHHHhc--CcchhhhhhhhcccccchHHHHH----HHHHhcCce
Confidence 22333333221 110 00001111 23566899999998 999999999999 7777665544 344556888
Q ss_pred EEEEE
Q 025642 133 VCAVY 137 (250)
Q Consensus 133 vi~v~ 137 (250)
++.+.
T Consensus 662 llsit 666 (728)
T KOG0064|consen 662 LLSIT 666 (728)
T ss_pred EEEee
Confidence 87663
No 422
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.87 E-value=1.3e-09 Score=92.59 Aligned_cols=167 Identities=25% Similarity=0.233 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCC-----CcccChhhhhhHHHHHHHhCCCCCCCchhh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-----PVAMDIRELISLEDVMEELGLGPNGGLIYC 77 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y-----~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~ 77 (250)
+-++++|+.|||||||++.+.+...+......+.+..|+.....+ .+..|++....++.++..+..++++.....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 678999999999999999999998887777777777765544444 345577777778889999999999865432
Q ss_pred hhhh----hhhHHHHHHHHHhcCCC-CCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHH
Q 025642 78 MEHL----EDNLDDWLAEELDNYLD-DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (250)
Q Consensus 78 ~~~~----~~~ls~~la~aL~~~~~-~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s 152 (250)
-... ......|+...... . +++.+++-|++.|.+.+......+.+.+++ . .++..+......+..+.+
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~--~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~ 158 (219)
T COG1100 86 DSTLRESSDELTEEWLEELREL--APDDVPILLVGNKIDLFDEQSSSEEILNQLNR--E---VVLLVLAPKAVLPEVANP 158 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHh--CCCCceEEEEecccccccchhHHHHHHhhhhc--C---cchhhhHhHHhhhhhccc
Confidence 2222 11121444433333 3 479999999999999998777455554431 1 112233444444444444
Q ss_pred hhHHhhhhHhHhcCCeeeecCchhhh
Q 025642 153 GCMASLSAMVQLELPHVNILSKMDLV 178 (250)
Q Consensus 153 ~~l~~~~~~~~~~~p~v~vlsK~Dl~ 178 (250)
. ++.++++. ...|.++.+.|.++.
T Consensus 159 ~-~~~~s~~~-~~~~~v~~~~~~~~~ 182 (219)
T COG1100 159 A-LLETSAKS-LTGPNVNELFKELLR 182 (219)
T ss_pred c-eeEeeccc-CCCcCHHHHHHHHHH
Confidence 3 44444443 566677666666664
No 423
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=4.7e-09 Score=97.69 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccc
Q 025642 86 DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF 143 (250)
Q Consensus 86 s~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~ 143 (250)
++.+||||.. +|-+|.+||||+ ||+..... +=..|+.|.+|+++|. +|-.+
T Consensus 420 RvSLARALfl--EPTLLMLDEPTNHLDLNAVIW----LdNYLQgWkKTLLIVS-HDQgF 471 (807)
T KOG0066|consen 420 RVSLARALFL--EPTLLMLDEPTNHLDLNAVIW----LDNYLQGWKKTLLIVS-HDQGF 471 (807)
T ss_pred ehhHHHHHhc--CceeeeecCCccccccceeee----hhhHHhhhhheeEEEe-cccch
Confidence 3899999999 999999999999 99987633 2334555677887775 44333
No 424
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.82 E-value=3.4e-07 Score=73.04 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=39.2
Q ss_pred hcCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHh-hcCCceeEEeecCCHHHHHHHHH
Q 025642 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD-EYSMVSFMPLDLRKESRYFLYLS 242 (250)
Q Consensus 164 ~~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~-~~~~~~f~~l~~~~~~~~~~~~~ 242 (250)
.+.|.+-|.||+|+.+.. ... +....+...++ .+.-..++|.+..|...+..+..
T Consensus 109 ~~~~vi~v~nK~D~~~~~-~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~ 164 (170)
T cd01876 109 LGIPFLVVLTKADKLKKS-ELA-----------------------KALKEIKKELKLFEIDPPIILFSSLKGQGIDELRA 164 (170)
T ss_pred cCCCEEEEEEchhcCChH-HHH-----------------------HHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHH
Confidence 468989999999996543 100 01111112222 34447888999999999999988
Q ss_pred Hhhhh
Q 025642 243 SMVWC 247 (250)
Q Consensus 243 ~~~~~ 247 (250)
.|.+.
T Consensus 165 ~l~~~ 169 (170)
T cd01876 165 LIEKW 169 (170)
T ss_pred HHHHh
Confidence 88765
No 425
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.79 E-value=7.5e-08 Score=81.67 Aligned_cols=102 Identities=23% Similarity=0.281 Sum_probs=59.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
.++|.||+||||||+++.+.+.+.+. .|.|...+. |.. ...+.. +.. ..+...+.. .
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~-~~E--~~~~~~---~~~------i~q~~vg~~----------~ 60 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED-PIE--FVHESK---RSL------INQREVGLD----------T 60 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC-Ccc--ccccCc---cce------eeecccCCC----------c
Confidence 47899999999999999999888754 566665543 321 111100 001 111111211 1
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 83 ~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
..+...+++++.. +|+++++|||.. ... +...++ ....|..++++
T Consensus 61 ~~~~~~i~~aLr~--~pd~ii~gEird--~e~----~~~~l~-~a~~G~~v~~t 105 (198)
T cd01131 61 LSFENALKAALRQ--DPDVILVGEMRD--LET----IRLALT-AAETGHLVMST 105 (198)
T ss_pred cCHHHHHHHHhcC--CcCEEEEcCCCC--HHH----HHHHHH-HHHcCCEEEEE
Confidence 1244677888888 999999999973 322 213333 33557766544
No 426
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.77 E-value=1.9e-07 Score=84.96 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
.+++++|||||||||++..|++.+.+.+++|.+.+.|+
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 57899999999999999999999999889999999887
No 427
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.77 E-value=9.3e-08 Score=90.01 Aligned_cols=151 Identities=13% Similarity=0.124 Sum_probs=105.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC-cc--------CCCCCCc----------ccChhhhhh------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AA--------ENFDYPV----------AMDIRELIS------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp-~~--------~~~~y~~----------~~~i~~~i~------ 58 (250)
++||.|-.|-|-+.|+.+|+|+.++.+|+|.+.|.|. .. ..++|-| ++++.+++-
T Consensus 286 IvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~ 365 (501)
T COG3845 286 IVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDK 365 (501)
T ss_pred EEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccc
Confidence 6899999999999999999999998889999999874 11 1233311 233333321
Q ss_pred -----------------HHHHHHHhCCCCCCCchhhhhhhhhh-HHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025642 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDN-LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (250)
Q Consensus 59 -----------------~~~vm~~~~L~~~g~~~~~~~~~~~~-ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~ 119 (250)
..+++++|++.+.+-....-.....| ++..+||.+.. +|++||+-+||. +|..+...+.
T Consensus 366 ~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~--~p~lLI~~qPTrGLDvgA~~~I~ 443 (501)
T COG3845 366 KPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELAR--RPDLLIAAQPTRGLDVGAIEFIH 443 (501)
T ss_pred cccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhcc--CCCEEEEcCCCccccHHHHHHHH
Confidence 67788999987543222112233333 44889999999 999999999999 9999998888
Q ss_pred HHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhH
Q 025642 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 120 ~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (250)
+.+.+.++.|..|+.+. ..+.+....++++.....+.
T Consensus 444 -~~l~e~r~~G~AVLLiS----~dLDEil~lsDrIaVi~~Gr 480 (501)
T COG3845 444 -ERLLELRDAGKAVLLIS----EDLDEILELSDRIAVIYEGR 480 (501)
T ss_pred -HHHHHHHhcCCEEEEEe----hhHHHHHHhhheeeeeeCCc
Confidence 55555677899987664 55555555555444444433
No 428
>PRK13695 putative NTPase; Provisional
Probab=98.77 E-value=1.1e-08 Score=84.63 Aligned_cols=123 Identities=18% Similarity=0.277 Sum_probs=60.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCCCcccChhhhhh-HHHHHHHhCC-CCC--CCc
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDYPVAMDIRELIS-LEDVMEELGL-GPN--GGL 74 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y~~~~~i~~~i~-~~~vm~~~~L-~~~--g~~ 74 (250)
-++|+|+|||||||+++.+.+.+.+ .| +.+.+.-.. .....+ ++.+..+ ....+...+. +.. +..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKVGGFYTEEVREGGKRIGF----KIIDLDTGEEGILARVGFPSRPRVGKY 75 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeEEEEEcHHHHhcCCccce----EEEEcCCCCeEEccccCCCCCCceeeE
Confidence 3689999999999999999887665 34 232222110 011111 1111100 0111122222 111 111
Q ss_pred hhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 75 ~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+..++-+ ......+.+.... +|+++++|||+.++... .... +.+..+.+.+.+++++.
T Consensus 76 ~~~lsgl-e~~~~~l~~~~l~--~~~~lllDE~~~~e~~~-~~~~-~~l~~~~~~~~~~i~v~ 133 (174)
T PRK13695 76 VVNLEDL-ERIGIPALERALE--EADVIIIDEIGKMELKS-PKFV-KAVEEVLDSEKPVIATL 133 (174)
T ss_pred EEehHHH-HHHHHHHHHhccC--CCCEEEEECCCcchhhh-HHHH-HHHHHHHhCCCeEEEEE
Confidence 1111111 1121333444445 89999999987766555 3344 56666656677776653
No 429
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.75 E-value=1.8e-07 Score=78.50 Aligned_cols=125 Identities=14% Similarity=0.248 Sum_probs=69.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC--CCceEEEee-cCCc-c---CCCCC--Ccc------cChhhhhh----HHHHH
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVN-LDPA-A---ENFDY--PVA------MDIRELIS----LEDVM 63 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~i~i~~-~dp~-~---~~~~y--~~~------~~i~~~i~----~~~vm 63 (250)
-++.|+|.||||||||+.+|+--... .+|.=-..+ .|+. + .++.+ .+. +.-..... ++++.
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~~ 117 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEAD 117 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhhh
Confidence 36789999999999999998765432 222211110 1111 0 00000 000 01111111 45555
Q ss_pred HHhCCCCCCCchhhhhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 64 EELGLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 64 ~~~~L~~~g~~~~~~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
.+-+.+++. +... .+.+-..+.+.+ . +.-++|+|||-+ |-+..+.+++ .+++.+.+.|..+|++
T Consensus 118 ~e~~~~~~s-----Lh~~SHGEsf~~i~~~rf-~--~~GiYiLDEPEa~LSp~RQlell-a~l~~la~sGaQ~IiA 184 (233)
T COG3910 118 GEANYGGRS-----LHHMSHGESFLAIFHNRF-N--GQGIYILDEPEAALSPSRQLELL-AILRDLADSGAQIIIA 184 (233)
T ss_pred hhcccCCcc-----hhhhccchHHHHHHHHHh-c--cCceEEecCccccCCHHHHHHHH-HHHHHHHhcCCeEEEE
Confidence 444444331 1111 111203334443 2 678999999999 9999999999 9999999888666554
No 430
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.75 E-value=8.9e-07 Score=70.36 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=60.7
Q ss_pred CCCEEEEeCCCccCHHhHH-HHHHHHHHHHHhCCCeEEEEEecccccc-ccHHHHHHhhHHhhhhHhHhcCCeeeecCch
Q 025642 98 DDDYLVFDCPGQIELFTHV-PVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKM 175 (250)
Q Consensus 98 ~~~~lllDEPt~LD~~~~~-~i~~~ll~~l~~~~~~vi~v~l~d~~~~-~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK~ 175 (250)
+.++.++|.||.-+..... ............. .. ++++++|+... .+....+.. .....+.|.+-|+||+
T Consensus 50 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~-~d-~i~~v~d~~~~~~~~~~~~~~------~~~~~~~~~iiv~nK~ 121 (168)
T cd04163 50 DAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD-VD-LVLFVVDASEPIGEGDEFILE------LLKKSKTPVILVLNKI 121 (168)
T ss_pred CeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh-CC-EEEEEEECCCccCchHHHHHH------HHHHhCCCEEEEEEch
Confidence 3579999999984443322 2111222222121 22 23345665543 333322221 1223378999999999
Q ss_pred hhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHhhh
Q 025642 176 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSMVW 246 (250)
Q Consensus 176 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 246 (250)
|+......+..+ . + .+-..++...+.+.+..+++.+..+...+.+
T Consensus 122 Dl~~~~~~~~~~--------~---------------~---~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 122 DLVKDKEDLLPL--------L---------------E---KLKELGPFAEIFPISALKGENVDELLEEIVK 166 (168)
T ss_pred hccccHHHHHHH--------H---------------H---HHHhccCCCceEEEEeccCCChHHHHHHHHh
Confidence 996422111110 0 0 0111233567788999999988888887765
No 431
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.73 E-value=2.5e-07 Score=74.90 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=59.2
Q ss_pred CEEEEeCCCccCHHhH-HHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHh--HhcCCeeeecCchh
Q 025642 100 DYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV--QLELPHVNILSKMD 176 (250)
Q Consensus 100 ~~lllDEPt~LD~~~~-~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~--~~~~p~v~vlsK~D 176 (250)
.+.+.|.||+.+.... +.+.+...+.+.... ++++++|+..-.++..-+..+.-.+.... ....|.+-|+||+|
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d---~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 125 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLRHIERTR---LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKID 125 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHHHHHhCC---EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchh
Confidence 7889999998432211 122324444443222 23344565543222333333322222211 13679999999999
Q ss_pred hhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHhhh
Q 025642 177 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSMVW 246 (250)
Q Consensus 177 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 246 (250)
+.++. ..... +.+...+..-..+.+.+..+..-+..++..+-.
T Consensus 126 l~~~~-~~~~~--------------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 126 LLDEE-ELFEL--------------------------LKELLKELWGKPVFPISALTGEGLDELLRKLAE 168 (170)
T ss_pred cCCch-hhHHH--------------------------HHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHh
Confidence 86543 11100 001111112356778888888888777766543
No 432
>PRK00089 era GTPase Era; Reviewed
Probab=98.73 E-value=3.5e-07 Score=81.72 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
.++|+|++|||||||++.+.|-
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~ 28 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQ 28 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999873
No 433
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.73 E-value=1.9e-08 Score=83.34 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=31.1
Q ss_pred CCCEEEEeCCCc-cC---HHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 98 DDDYLVFDCPGQ-IE---LFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 98 ~~~~lllDEPt~-LD---~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+|+++++|||+. +| ......+. ++++.+++.|.+++++.
T Consensus 95 ~~~~lviD~~~~~~~~~~~~~~~~i~-~l~~~l~~~g~tvi~v~ 137 (187)
T cd01124 95 KAKRVVIDSVSGLLLMEQSTARLEIR-RLLFALKRFGVTTLLTS 137 (187)
T ss_pred CCCEEEEeCcHHHhhcChHHHHHHHH-HHHHHHHHCCCEEEEEe
Confidence 899999999999 88 55555555 78888887888877664
No 434
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.72 E-value=9.1e-08 Score=86.58 Aligned_cols=98 Identities=20% Similarity=0.275 Sum_probs=59.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~ 83 (250)
.++|.||+||||||+++++.+++++..|.+.+. |+..-.+..+.... .. . .. ...+ ...-
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~~~~~~---l~-~----~~---~~~~-------~~~~ 205 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPHPNYVH---LF-Y----SK---GGQG-------LAKV 205 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCCCCEEE---EE-e----cC---CCCC-------cCcc
Confidence 688999999999999999999999988877663 32211111111000 00 0 00 0000 0001
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCC
Q 025642 84 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~ 131 (250)
.+...++.+|.. +|+++++|||.. .+.+ .+++.+. .|.
T Consensus 206 ~~~~~l~~~Lr~--~pd~ii~gE~r~------~e~~-~~l~a~~-~g~ 243 (308)
T TIGR02788 206 TPKDLLQSCLRM--RPDRIILGELRG------DEAF-DFIRAVN-TGH 243 (308)
T ss_pred CHHHHHHHHhcC--CCCeEEEeccCC------HHHH-HHHHHHh-cCC
Confidence 232556667777 999999999996 3445 6677775 444
No 435
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.72 E-value=1.3e-07 Score=74.09 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=65.5
Q ss_pred CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeecCchhh
Q 025642 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (250)
Q Consensus 98 ~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK~Dl 177 (250)
..++.+.|.||.-+..............+.+. ... +++.+|+.......... ..........|.+-|+||+|+
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~-~d~-il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLER-ADL-ILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHh-CCE-EEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEcccc
Confidence 45799999999844433332211233333232 122 23345544433222221 233344578899999999999
Q ss_pred hcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHhhhhh
Q 025642 178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSMVWCL 248 (250)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 248 (250)
.... ..... . + ........+.-..+.+.+..+.+-+..++..+.+++
T Consensus 117 ~~~~-~~~~~--------~------------~---~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 117 LPEE-EEEEL--------L------------E---LRLLILLLLLGLPVIAVSALTGEGIDELREALIEAL 163 (163)
T ss_pred CChh-hHHHH--------H------------H---HHHhhcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence 7543 11100 0 0 222233444557788888888888888887776653
No 436
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.70 E-value=8.9e-07 Score=80.96 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=37.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE 43 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~ 43 (250)
.++++|.|++|||||||+..+...++..+.+|.+.+.||...
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 478999999999999999999999988788999999999653
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.70 E-value=5e-08 Score=98.30 Aligned_cols=112 Identities=14% Similarity=0.216 Sum_probs=65.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC-CCCCCceEEEeecCCccC--CCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~-l~~~~G~i~i~~~dp~~~--~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~ 80 (250)
+++|.|||++||||++|.+... +-+..|- .-|+.+ .+++...+ +. .++...........
T Consensus 329 ~~iITGpN~gGKTt~lktigl~~~maq~G~-----~vpa~~~~~i~~~~~i-----------~~--~ig~~~si~~~lSt 390 (782)
T PRK00409 329 VLVITGPNTGGKTVTLKTLGLAALMAKSGL-----PIPANEPSEIPVFKEI-----------FA--DIGDEQSIEQSLST 390 (782)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHHHhCC-----CcccCCCccccccceE-----------EE--ecCCccchhhchhH
Confidence 5789999999999999998643 1122221 112321 23332111 00 11111111111223
Q ss_pred hhhhHH--HHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 81 LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 81 ~~~~ls--~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
+...+. ..+++++ . +|+++|+|||+. +|+.....+...+++.+.+.|.+++++
T Consensus 391 fS~~m~~~~~Il~~~-~--~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIit 446 (782)
T PRK00409 391 FSGHMTNIVRILEKA-D--KNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIAT 446 (782)
T ss_pred HHHHHHHHHHHHHhC-C--cCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 333331 4444444 3 899999999999 999999888767888887777666544
No 438
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=8.7e-08 Score=85.29 Aligned_cols=48 Identities=19% Similarity=-0.018 Sum_probs=36.5
Q ss_pred HHHHHHHhcC--CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 87 DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 87 ~~la~aL~~~--~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
+.+|++++.. .+|+++++|||++ +|+.....+. ++++++.+ +.+++++
T Consensus 179 ~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~-~~l~~~~~-~~tii~i 229 (276)
T cd03241 179 LMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVG-KKLKELSR-SHQVLCI 229 (276)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEE
Confidence 6666654321 2899999999999 9999999988 77887754 5666555
No 439
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.64 E-value=3e-08 Score=102.27 Aligned_cols=157 Identities=16% Similarity=0.214 Sum_probs=98.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC---CCceEEEeecCCcc----CCCCC-------CcccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~---~~G~i~i~~~dp~~----~~~~y-------~~~~~i~~~i~----------- 58 (250)
.+.++||+|||||||+++++|-... ..|+|.++|++-.. ....| .+.+++|+.+.
T Consensus 143 m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r 222 (1391)
T KOG0065|consen 143 MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSR 222 (1391)
T ss_pred eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccc
Confidence 3679999999999999999998754 25689999977411 11222 12334444332
Q ss_pred -------------HHHHHHHhCCCCCCCchhhhhhhh------hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHH
Q 025642 59 -------------LEDVMEELGLGPNGGLIYCMEHLE------DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (250)
Q Consensus 59 -------------~~~vm~~~~L~~~g~~~~~~~~~~------~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i 118 (250)
.+.+++.+||..-.+.+.. +... ++.++.++..++. +++++..||++. ||..+.-++
T Consensus 223 ~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VG-nd~~RGvSGGerKRvsi~E~~v~--~~~~~~~De~t~GLDSsTal~i 299 (1391)
T KOG0065|consen 223 YDEVSRREKLAAMTDYLLKILGLDHCADTLVG-NDMVRGVSGGERKRVSIGEMLVG--PASILFWDEITRGLDSSTAFQI 299 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhCchhhccceec-ccccccccCcccceeeeeeeeec--CcceeeeecccccccHHHHHHH
Confidence 4567888988652211100 1111 1233888999988 999999999999 999999999
Q ss_pred HHHHHHHHHhC-CCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCC
Q 025642 119 LRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (250)
Q Consensus 119 ~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p 167 (250)
+ +.++++.+. +.+.++. + .+-..+....++.+++...+......|
T Consensus 300 i-k~lr~~a~~~~~t~~vs-i--~Q~s~~~~~lFD~v~lL~eG~~iy~Gp 345 (1391)
T KOG0065|consen 300 I-KALRQLAHITGATALVS-I--LQPSPEIYDLFDDVILLSEGYQIYQGP 345 (1391)
T ss_pred H-HHHHHHHhhhcceEEEE-e--ccCChHHHHhhhheeeeeccceEEecc
Confidence 9 888888764 5454322 1 133344445555554444444333333
No 440
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.64 E-value=5.8e-07 Score=72.99 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=17.6
Q ss_pred EEcCCCCcHHHHHHHHHcC
Q 025642 7 VIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 7 iiGpnGSGKSTLl~~l~g~ 25 (250)
++|++|||||||++.+.|.
T Consensus 1 iiG~~~~GKStll~~l~~~ 19 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA 19 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC
Confidence 5899999999999999985
No 441
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.64 E-value=7.3e-07 Score=68.35 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEe
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~ 36 (250)
-.+.|+||+|+||||+++.+++.+......+.+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 3578999999999999999999887765334443
No 442
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.63 E-value=2.2e-07 Score=80.19 Aligned_cols=114 Identities=14% Similarity=0.133 Sum_probs=64.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCceEEEeecCCccC-CCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAE-NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~dp~~~-~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
+++|.||||+||||+++.+++..-. ..|- .-|+.. .+++... ++.+++-..+ +......+
T Consensus 32 ~~~itG~n~~gKs~~l~~i~~~~~la~~G~-----~vpa~~~~i~~~~~-----------i~~~~~~~d~--~~~~~StF 93 (218)
T cd03286 32 ILVLTGPNMGGKSTLLRTVCLAVIMAQMGM-----DVPAKSMRLSLVDR-----------IFTRIGARDD--IMKGESTF 93 (218)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHHcCC-----ccCccccEeccccE-----------EEEecCcccc--cccCcchH
Confidence 5689999999999999999875321 1121 012211 1111100 0111111100 00001333
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025642 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~vi~v 136 (250)
...+ ..+++.+....+|+++++|||+. .++.....+...+++.+.+. +.+++++
T Consensus 94 ~~e~-~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~ 149 (218)
T cd03286 94 MVEL-SETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFS 149 (218)
T ss_pred HHHH-HHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3344 44444444333899999999999 99999988886778888765 6665544
No 443
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.63 E-value=5.6e-07 Score=89.17 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhcCC-CCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 84 NLDDWLAEELDNYL-DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 84 ~ls~~la~aL~~~~-~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
.+++.||..|...+ ..-++||||||. |-+.-.+.++ +++++|...|.||+++
T Consensus 828 aQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~GnTViVI 881 (935)
T COG0178 828 AQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDKGNTVIVI 881 (935)
T ss_pred HHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 35588999998721 337999999999 9999999999 9999999899998776
No 444
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.61 E-value=4.9e-07 Score=97.00 Aligned_cols=76 Identities=16% Similarity=0.079 Sum_probs=53.0
Q ss_pred HHHHHhCCCCCC-CchhhhhhhhhhHHHHHHHHHhcC-CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 61 DVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 61 ~vm~~~~L~~~g-~~~~~~~~~~~~ls~~la~aL~~~-~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+.+.++|||-.. |+...--.-.+.++..||..|... ..+.++||||||. |.+.....++ +++++|.+.|.||++|-
T Consensus 1681 ~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~g~tvivie 1759 (1809)
T PRK00635 1681 QALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSLGHSVIYID 1759 (1809)
T ss_pred HHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCeEEEEe
Confidence 345566666321 221111112234568899998751 1368999999999 9999999999 99999998899998773
No 445
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.60 E-value=4.4e-06 Score=69.47 Aligned_cols=118 Identities=16% Similarity=0.143 Sum_probs=62.8
Q ss_pred CCEEEEeCCCc-cC---HHhHHHHHHHHHHH-HHhCCCeEEEEEeccccc-cccHHHHHHhhHHhhhhHhHhcCCeeeec
Q 025642 99 DDYLVFDCPGQ-IE---LFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNIL 172 (250)
Q Consensus 99 ~~~lllDEPt~-LD---~~~~~~i~~~ll~~-l~~~~~~vi~v~l~d~~~-~~d~~~~~s~~l~~~~~~~~~~~p~v~vl 172 (250)
.++.|.|.||. .. ...+.... .++.. ++.......+++++|+.. ..+...-+.. .+-..+.|.+.++
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~------~l~~~~~~~iiv~ 142 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQ-KLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIE------WLKEYGIPVLIVL 142 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHH-HHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHH------HHHHcCCcEEEEE
Confidence 46899999996 32 11122222 33333 222222223445556433 2221111111 1124578989999
Q ss_pred CchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHhhhhh
Q 025642 173 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSMVWCL 248 (250)
Q Consensus 173 sK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 248 (250)
||+|+++.. +. .+....+.+.+..+ -..+.|.+..|.+.+..+...|-..+
T Consensus 143 nK~Dl~~~~-~~-----------------------~~~~~~i~~~l~~~-~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 143 TKADKLKKG-ER-----------------------KKQLKKVRKALKFG-DDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred ECcccCCHH-HH-----------------------HHHHHHHHHHHHhc-CCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 999997543 11 11112233333333 36788999999999999988876554
No 446
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.59 E-value=1.3e-06 Score=77.34 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
.++|+|++|+|||||++.+.|-
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~ 23 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ 23 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999974
No 447
>PRK14974 cell division protein FtsY; Provisional
Probab=98.57 E-value=2.4e-06 Score=78.24 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=79.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
+++++++||||+||||++..++..+...+.+|.+.+-|+.+. ...+. +....+.+|+.-..+. +..+ .
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~--------~a~eq--L~~~a~~lgv~v~~~~-~g~d-p 207 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA--------GAIEQ--LEEHAERLGVKVIKHK-YGAD-P 207 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH--------HHHHH--HHHHHHHcCCceeccc-CCCC-H
Confidence 368999999999999999999998887777888877664211 00111 3334445554321100 0000 0
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCcc--CHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhh
Q 025642 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQI--ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~~lllDEPt~L--D~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (250)
..-....+..+-.. +.+++|+|+|+.+ |.....++- .+.+... -..++ ..+|+..-.+...-+. . ..
T Consensus 208 ~~v~~~ai~~~~~~--~~DvVLIDTaGr~~~~~~lm~eL~-~i~~~~~-pd~~i---LVl~a~~g~d~~~~a~---~-f~ 276 (336)
T PRK14974 208 AAVAYDAIEHAKAR--GIDVVLIDTAGRMHTDANLMDELK-KIVRVTK-PDLVI---FVGDALAGNDAVEQAR---E-FN 276 (336)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEECCCccCCcHHHHHHHH-HHHHhhC-CceEE---EeeccccchhHHHHHH---H-HH
Confidence 01011222223334 6789999999984 444443332 4444332 22222 2345432111111110 0 00
Q ss_pred hHhHhcCCeeeecCchhhhcchh
Q 025642 160 AMVQLELPHVNILSKMDLVTNKK 182 (250)
Q Consensus 160 ~~~~~~~p~v~vlsK~Dl~~~~~ 182 (250)
. ..+. .--|+||.|...+.+
T Consensus 277 ~--~~~~-~giIlTKlD~~~~~G 296 (336)
T PRK14974 277 E--AVGI-DGVILTKVDADAKGG 296 (336)
T ss_pred h--cCCC-CEEEEeeecCCCCcc
Confidence 0 1233 344899999977654
No 448
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.56 E-value=6.2e-07 Score=73.51 Aligned_cols=153 Identities=22% Similarity=0.270 Sum_probs=88.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~ 83 (250)
-++++|.+.+|||||++.++|.. ..+.|. |+. ++.- ...
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~------~~v~n~-pG~---------Tv~~-------------------------~~g 40 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK------QKVGNW-PGT---------TVEK-------------------------KEG 40 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS------EEEEES-TTS---------SSEE-------------------------EEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------ceecCC-CCC---------Ceee-------------------------eeE
Confidence 37899999999999999999964 333332 211 1110 000
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCc--cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhH
Q 025642 84 NLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~~~lllDEPt~--LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (250)
.+ -.. +.++.+.|-||. +...+..+.+ ..+.+..+..-+ +++++|+..+. +-+......
T Consensus 41 ~~-------~~~--~~~~~lvDlPG~ysl~~~s~ee~v--~~~~l~~~~~D~-ii~VvDa~~l~-------r~l~l~~ql 101 (156)
T PF02421_consen 41 IF-------KLG--DQQVELVDLPGIYSLSSKSEEERV--ARDYLLSEKPDL-IIVVVDATNLE-------RNLYLTLQL 101 (156)
T ss_dssp EE-------EET--TEEEEEEE----SSSSSSSHHHHH--HHHHHHHTSSSE-EEEEEEGGGHH-------HHHHHHHHH
T ss_pred EE-------Eec--CceEEEEECCCcccCCCCCcHHHH--HHHHHhhcCCCE-EEEECCCCCHH-------HHHHHHHHH
Confidence 00 002 567999999996 7766654432 122232333333 56678887753 233445556
Q ss_pred hHhcCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHH
Q 025642 162 VQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYL 241 (250)
Q Consensus 162 ~~~~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~ 241 (250)
..++.|.+-|+||+|.+.+.+ +. -|. .+|.+.+ -+..+|++..+.+-+..|.
T Consensus 102 ~e~g~P~vvvlN~~D~a~~~g-~~----id~---------------~~Ls~~L--------g~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 102 LELGIPVVVVLNKMDEAERKG-IE----IDA---------------EKLSERL--------GVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp HHTTSSEEEEEETHHHHHHTT-EE----E-H---------------HHHHHHH--------TS-EEEEBTTTTBTHHHHH
T ss_pred HHcCCCEEEEEeCHHHHHHcC-CE----ECH---------------HHHHHHh--------CCCEEEEEeCCCcCHHHHH
Confidence 688999999999999987652 11 111 2333322 1578888888888887777
Q ss_pred HHh
Q 025642 242 SSM 244 (250)
Q Consensus 242 ~~~ 244 (250)
..|
T Consensus 154 ~~I 156 (156)
T PF02421_consen 154 DAI 156 (156)
T ss_dssp HHH
T ss_pred hhC
Confidence 654
No 449
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.55 E-value=8.3e-07 Score=76.85 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-cCCCCCCceEEEeecC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNLD 39 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~-g~l~~~~G~i~i~~~d 39 (250)
.++.|.|++|||||||+..++ +.++ .++++.+...+
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e 62 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTE 62 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcC
Confidence 467899999999999999874 3333 46677776653
No 450
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.55 E-value=4e-07 Score=86.15 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=80.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhh-hh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH-LE 82 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~-~~ 82 (250)
.++|+|+||+|||||+++|++..+++.|.|.+.|+.... +.+++ ++.+..-++...-..+...+. ..
T Consensus 160 ~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~e----------v~e~~--~~~l~~~~l~r~v~vv~~~~~~~~ 227 (438)
T PRK07721 160 RVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGRE----------VREFI--ERDLGPEGLKRSIVVVATSDQPAL 227 (438)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCcc----------HHHHH--HhhcChhhhcCeEEEEECCCCCHH
Confidence 478999999999999999999999999999988766421 00000 000000000000000000000 00
Q ss_pred hhHH-----HHHHHHHhcCCCCCEEEEe-----------------CC-Cc--cCHHhHHHHHHHHHHHHHh--CC-CeEE
Q 025642 83 DNLD-----DWLAEELDNYLDDDYLVFD-----------------CP-GQ--IELFTHVPVLRNFVDHLKS--RN-FNVC 134 (250)
Q Consensus 83 ~~ls-----~~la~aL~~~~~~~~lllD-----------------EP-t~--LD~~~~~~i~~~ll~~l~~--~~-~~vi 134 (250)
.++. ..+|+-+......=++++| || +. +|+.....+. ++++++.+ .| .|.+
T Consensus 228 ~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~-~ller~~~~~~GsIT~~ 306 (438)
T PRK07721 228 MRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILP-KLLERTGTNASGSITAF 306 (438)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHH-HHHHHhcCCCCCCeeeE
Confidence 0000 1222222211011133334 64 44 9999998888 99999873 44 3555
Q ss_pred EEEeccccccccHHHHHHhhHHhhhhHhHhc
Q 025642 135 AVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (250)
Q Consensus 135 ~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~ 165 (250)
.+.++++|.+.+ .+++.+.....+++.+.
T Consensus 307 ~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls 335 (438)
T PRK07721 307 YTVLVDGDDMNE--PIADTVRGILDGHFVLD 335 (438)
T ss_pred EEEEEECCCCCc--hhhhhEEEecCEEEEEe
Confidence 555788999886 56676666666655544
No 451
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.54 E-value=2e-06 Score=77.60 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=36.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~ 42 (250)
..+++|+||+|||||||++.+.+.+...+.++.+.+.||..
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 36789999999999999999999988888899999999743
No 452
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.54 E-value=3.1e-06 Score=71.79 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCceE
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-TVRRTM 33 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~i 33 (250)
.++++|++|+|||||+++|++... ...+++
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~ 32 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEEL 32 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeE
Confidence 479999999999999999998742 334443
No 453
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.54 E-value=1.4e-06 Score=71.77 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
|++++.||+||||||++..++..+...+.++.+.+.|+
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 57899999999999999999987776666888888776
No 454
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.54 E-value=6.2e-08 Score=86.97 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC--CCCceEEEeecCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP 40 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~--~~~G~i~i~~~dp 40 (250)
++++||.|||||||||+++.|.+++. +.+|+|.+.+.|.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 58999999999999999999999987 6788999888774
No 455
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.54 E-value=6.6e-07 Score=71.68 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
|-++++|++|||||||++.+.+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3478999999999999999984
No 456
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.53 E-value=2.2e-06 Score=68.85 Aligned_cols=64 Identities=9% Similarity=0.038 Sum_probs=40.1
Q ss_pred HhcCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHH
Q 025642 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLS 242 (250)
Q Consensus 163 ~~~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~ 242 (250)
..+.|.+-|+||+|+..... . ..+ +..+++.+.+...+-..++|.+..+.+.+..+..
T Consensus 111 ~~~~~~iiv~nK~Dl~~~~~-~------~~~---------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (174)
T cd01895 111 EEGKALVIVVNKWDLVEKDS-K------TMK---------------EFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFD 168 (174)
T ss_pred hcCCCEEEEEeccccCCccH-H------HHH---------------HHHHHHHhhcccccCCceEEEeccCCCCHHHHHH
Confidence 34789999999999975420 0 000 0011111111112346899999999999999999
Q ss_pred Hhhhhh
Q 025642 243 SMVWCL 248 (250)
Q Consensus 243 ~~~~~~ 248 (250)
.+..|+
T Consensus 169 ~l~~~~ 174 (174)
T cd01895 169 AIDEVY 174 (174)
T ss_pred HHHHhC
Confidence 888763
No 457
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.52 E-value=6.2e-06 Score=69.63 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~ 34 (250)
+-++|+|++|+|||||++++.|...+..|.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~ 33 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAP 33 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccc
Confidence 45799999999999999999998777666654
No 458
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.52 E-value=1.3e-06 Score=80.30 Aligned_cols=102 Identities=25% Similarity=0.258 Sum_probs=59.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
.++|.||+||||||+++.+.+.+.+ .++.|.... ||... .++.. ...+ .....+.. .
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE-dp~E~--~~~~~---~~~i------~q~evg~~----------~ 181 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE-DPIEY--VHRNK---RSLI------NQREVGLD----------T 181 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc-CChhh--hccCc---cceE------EccccCCC----------C
Confidence 4789999999999999999997764 456666553 33110 11100 0000 00011111 0
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 83 ~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
..+...++.+|-. +|+++++||+. |..+....+ +. ...|..++.+
T Consensus 182 ~~~~~~l~~~lr~--~pd~i~vgEir--d~~~~~~~l----~a-a~tGh~v~~T 226 (343)
T TIGR01420 182 LSFANALRAALRE--DPDVILIGEMR--DLETVELAL----TA-AETGHLVFGT 226 (343)
T ss_pred cCHHHHHHHhhcc--CCCEEEEeCCC--CHHHHHHHH----HH-HHcCCcEEEE
Confidence 1244667888877 99999999997 555553333 32 3567776554
No 459
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.49 E-value=1.7e-06 Score=70.94 Aligned_cols=127 Identities=17% Similarity=0.149 Sum_probs=65.8
Q ss_pred CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeecCchhh
Q 025642 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (250)
Q Consensus 98 ~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK~Dl 177 (250)
+.++.++|.||+-+.... ....++.-. . +++++|+..-...... ..+ ......+.|.+-|+||+|+
T Consensus 61 ~~~~~liDtpG~~~~~~~------~~~~~~~~d-~--~i~v~d~~~~~~~~~~--~~~---~~~~~~~~~i~iv~nK~D~ 126 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSE------VIRGLSVSD-G--AILVVDANEGVQPQTR--EHL---RIAREGGLPIIVAINKIDR 126 (189)
T ss_pred CEEEEEEeCCCcHHHHHH------HHHHHHhcC-E--EEEEEECCCCCcHHHH--HHH---HHHHHCCCCeEEEEECCCC
Confidence 457899999997433221 112222222 2 2334565543222111 111 1112257899999999999
Q ss_pred hcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHhhhhhc
Q 025642 178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSMVWCLS 249 (250)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~ 249 (250)
.... .+... ...+.+.+.. ....+.+ .....+...+.+.|++..+.+-+.+++..+..++.
T Consensus 127 ~~~~-~~~~~----~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 127 VGEE-DLEEV----LREIKELLGL-IGFISTK-----EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cchh-cHHHH----HHHHHHHHcc-ccccchh-----hhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 7632 11110 0111111111 0000101 22233445689999999999999999999887764
No 460
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.49 E-value=1.4e-06 Score=74.01 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=78.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
+.+++++||+|+||||.+.-|+..+...+.+|.+...|..+ ++ -.+. ++.+.+.+|+.-..... .+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R--~g------a~eQ--L~~~a~~l~vp~~~~~~--~~~~ 68 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR--IG------AVEQ--LKTYAEILGVPFYVART--ESDP 68 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS--TH------HHHH--HHHHHHHHTEEEEESST--TSCH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC--cc------HHHH--HHHHHHHhccccchhhc--chhh
Confidence 46899999999999999999988877667788888777422 00 1111 34445555543211000 0001
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc--cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhh
Q 025642 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~~lllDEPt~--LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (250)
.+-.+..+...-.. +-|++++|.||. -|.....++. ++++... ...++.| +++..-. ... . ....
T Consensus 69 ~~~~~~~l~~~~~~--~~D~vlIDT~Gr~~~d~~~~~el~-~~~~~~~--~~~~~LV--lsa~~~~--~~~-~---~~~~ 135 (196)
T PF00448_consen 69 AEIAREALEKFRKK--GYDLVLIDTAGRSPRDEELLEELK-KLLEALN--PDEVHLV--LSATMGQ--EDL-E---QALA 135 (196)
T ss_dssp HHHHHHHHHHHHHT--TSSEEEEEE-SSSSTHHHHHHHHH-HHHHHHS--SSEEEEE--EEGGGGG--HHH-H---HHHH
T ss_pred HHHHHHHHHHHhhc--CCCEEEEecCCcchhhHHHHHHHH-HHhhhcC--CccceEE--EecccCh--HHH-H---HHHH
Confidence 11111223322223 579999999998 4444444433 6666652 2333333 2322211 111 0 0111
Q ss_pred hHhHhcCCeeeecCchhhhcchh
Q 025642 160 AMVQLELPHVNILSKMDLVTNKK 182 (250)
Q Consensus 160 ~~~~~~~p~v~vlsK~Dl~~~~~ 182 (250)
-.-.++...+ |+||.|-..+.+
T Consensus 136 ~~~~~~~~~l-IlTKlDet~~~G 157 (196)
T PF00448_consen 136 FYEAFGIDGL-ILTKLDETARLG 157 (196)
T ss_dssp HHHHSSTCEE-EEESTTSSSTTH
T ss_pred HhhcccCceE-EEEeecCCCCcc
Confidence 1112233344 899999977654
No 461
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.47 E-value=1.1e-06 Score=71.03 Aligned_cols=68 Identities=10% Similarity=0.194 Sum_probs=43.8
Q ss_pred cCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHh
Q 025642 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSM 244 (250)
Q Consensus 165 ~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~ 244 (250)
+.|.+-|.+|+|+.++....... ... .... . .....+....++...|.+++....+.+..++..+
T Consensus 104 ~~p~ivv~nK~Dl~~~~~~~~~~-~~~--------~~~v-----~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 168 (171)
T cd00157 104 NVPIILVGTKIDLRDDENTLKKL-EKG--------KEPI-----T-PEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEA 168 (171)
T ss_pred CCCEEEEEccHHhhhchhhhhhc-ccC--------CCcc-----C-HHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHH
Confidence 69999999999998765211111 000 0000 0 1223345566787899999999999999998877
Q ss_pred hhh
Q 025642 245 VWC 247 (250)
Q Consensus 245 ~~~ 247 (250)
-+|
T Consensus 169 ~~~ 171 (171)
T cd00157 169 IRA 171 (171)
T ss_pred hhC
Confidence 543
No 462
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.47 E-value=9.9e-07 Score=72.19 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+++++|++||||||+++.+.+..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc
Confidence 46799999999999999988764
No 463
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.4e-06 Score=77.31 Aligned_cols=39 Identities=18% Similarity=0.062 Sum_probs=29.4
Q ss_pred HHHHHHHh-------cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 87 DWLAEELD-------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 87 ~~la~aL~-------~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
..++++++ ...+|+++++|||++ +|+..+..+. +.+.++
T Consensus 192 ~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~-~~l~~~ 238 (270)
T cd03242 192 LALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALL-DAIEGR 238 (270)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHH-HHhhcC
Confidence 66777664 112899999999999 9999998777 555443
No 464
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.46 E-value=1.3e-07 Score=81.81 Aligned_cols=38 Identities=29% Similarity=0.285 Sum_probs=33.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE-eecC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI-VNLD 39 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i-~~~d 39 (250)
+++++|.||||||||||++.+++.+++.+|.+.+ ...|
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D 71 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMD 71 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecc
Confidence 4789999999999999999999999999998665 5544
No 465
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.44 E-value=1.7e-06 Score=69.85 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
++++|++|+|||||++.+.+...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~ 24 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFS 24 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcc
Confidence 68999999999999999987543
No 466
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.43 E-value=3.3e-06 Score=84.43 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc--eEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~ 80 (250)
-+++++||||+||||++..|++.+....| +|.++..|+.. ++ ..+. +..+.+.+++..... .
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R--ig------A~eQ--L~~~a~~~gvpv~~~-----~- 249 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR--IG------ALEQ--LRIYGRILGVPVHAV-----K- 249 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc--hH------HHHH--HHHHHHhCCCCcccc-----C-
Confidence 37899999999999999999999865554 78887766421 11 1111 333444555433210 1
Q ss_pred hhhhHHHHHHHHHhcCCCCCEEEEeCCCc
Q 025642 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (250)
Q Consensus 81 ~~~~ls~~la~aL~~~~~~~~lllDEPt~ 109 (250)
-...+ ..++....+-+++|+|.||-
T Consensus 250 ~~~~l----~~al~~~~~~D~VLIDTAGR 274 (767)
T PRK14723 250 DAADL----RFALAALGDKHLVLIDTVGM 274 (767)
T ss_pred CHHHH----HHHHHHhcCCCEEEEeCCCC
Confidence 11122 23333322669999999996
No 467
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.43 E-value=9.8e-06 Score=72.68 Aligned_cols=177 Identities=14% Similarity=0.149 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCC---CCCCchhhhh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLG---PNGGLIYCME 79 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~---~~g~~~~~~~ 79 (250)
+++.|+|+||||||||++.+.+.++...+.+.+.| |... ..| . +.+...|.. -+.|-..|++
T Consensus 105 ~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~g-D~~t----------~~D---a-~rI~~~g~pvvqi~tG~~Chl~ 169 (290)
T PRK10463 105 LVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEG-DQQT----------VND---A-ARIRATGTPAIQVNTGKGCHLD 169 (290)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECC-CcCc----------HHH---H-HHHHhcCCcEEEecCCCCCcCc
Confidence 68999999999999999999998877655554433 2211 111 1 123333332 1222233332
Q ss_pred hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhh
Q 025642 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (250)
Q Consensus 80 ~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~ 158 (250)
. ..+..++. .|.. .+.+++|++--|+ ..+... .+.. ...++++.+... ...|.+|=
T Consensus 170 a--~mv~~Al~-~L~~-~~~d~liIEnvGnLvcPa~f---------dlge-~~~v~vlsV~eg--~dkplKyp------- 226 (290)
T PRK10463 170 A--QMIADAAP-RLPL-DDNGILFIENVGNLVCPASF---------DLGE-KHKVAVLSVTEG--EDKPLKYP------- 226 (290)
T ss_pred H--HHHHHHHH-HHhh-cCCcEEEEECCCCccCCCcc---------chhh-ceeEEEEECccc--cccchhcc-------
Confidence 1 11212222 2222 1568999988888 577742 2322 233433332222 11244541
Q ss_pred hhHhHhcCCeeeecCchhhhcch-hhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHH
Q 025642 159 SAMVQLELPHVNILSKMDLVTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRY 237 (250)
Q Consensus 159 ~~~~~~~~p~v~vlsK~Dl~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~ 237 (250)
-.+..+.+-|+||+|+++.. ++++ .+.+ .++++ +.....+|++..+.+.+
T Consensus 227 ---~~f~~ADIVVLNKiDLl~~~~~dle--------~~~~--------~lr~l----------np~a~I~~vSA~tGeGl 277 (290)
T PRK10463 227 ---HMFAAASLMLLNKVDLLPYLNFDVE--------KCIA--------CAREV----------NPEIEIILISATSGEGM 277 (290)
T ss_pred ---chhhcCcEEEEEhHHcCcccHHHHH--------HHHH--------HHHhh----------CCCCcEEEEECCCCCCH
Confidence 22467788899999997532 0111 1100 11222 23477889999988888
Q ss_pred HHHHHHhhh
Q 025642 238 FLYLSSMVW 246 (250)
Q Consensus 238 ~~~~~~~~~ 246 (250)
..++..+.+
T Consensus 278 d~L~~~L~~ 286 (290)
T PRK10463 278 DQWLNWLET 286 (290)
T ss_pred HHHHHHHHH
Confidence 888877654
No 468
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.40 E-value=4.3e-06 Score=67.67 Aligned_cols=59 Identities=8% Similarity=0.171 Sum_probs=39.6
Q ss_pred hcCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHH
Q 025642 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSS 243 (250)
Q Consensus 164 ~~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~ 243 (250)
...|.+-|.||+|+..+. .. ..+ .+..+.++++.+.+.+++..+.+.+..++..
T Consensus 108 ~~~p~ilv~nK~Dl~~~~-~~------~~~-------------------~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 161 (172)
T cd01862 108 ENFPFVVLGNKIDLEEKR-QV------STK-------------------KAQQWCQSNGNIPYFETSAKEAINVEQAFET 161 (172)
T ss_pred CCceEEEEEECccccccc-cc------CHH-------------------HHHHHHHHcCCceEEEEECCCCCCHHHHHHH
Confidence 367999999999996422 00 000 0112233455688999999999999999888
Q ss_pred hhhhh
Q 025642 244 MVWCL 248 (250)
Q Consensus 244 ~~~~~ 248 (250)
+.+++
T Consensus 162 i~~~~ 166 (172)
T cd01862 162 IARKA 166 (172)
T ss_pred HHHHH
Confidence 77653
No 469
>PRK09866 hypothetical protein; Provisional
Probab=98.39 E-value=2.7e-05 Score=76.30 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+.++|+|++|+|||||++++.|..
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~ 93 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTE 93 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc
Confidence 678999999999999999999964
No 470
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.39 E-value=1.1e-05 Score=70.64 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC--CCCCCceEE
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH--CETVRRTMH 34 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~--l~~~~G~i~ 34 (250)
.++|+|++||||||++++++|. .+..+|.+.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t 60 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCccc
Confidence 4789999999999999999997 555556553
No 471
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.39 E-value=1.3e-06 Score=76.85 Aligned_cols=145 Identities=14% Similarity=0.232 Sum_probs=78.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEE--E--eecCCcc-----CCC---------CCCcccChh---hhhh----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH--I--VNLDPAA-----ENF---------DYPVAMDIR---ELIS---- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~--i--~~~dp~~-----~~~---------~y~~~~~i~---~~i~---- 58 (250)
.++|+||+|+||||+++.+.+......+++. + .+..+.. +.+ .-++...++ ..++
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~ 97 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKR 97 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999998876543332 2 2221100 000 001100000 0000
Q ss_pred ---------------------HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHH
Q 025642 59 ---------------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (250)
Q Consensus 59 ---------------------~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~ 116 (250)
.+++.-..|-.|.||...+.-....++ ..+|+++.. ++++.+| ||. +|..+..
T Consensus 98 ~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~-~~~Ar~~~~--~gsIt~l--~T~~~d~~~~~ 172 (249)
T cd01128 98 LVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRF-FGAARNIEE--GGSLTII--ATALVDTGSRM 172 (249)
T ss_pred HHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHH-HHHhcCCCC--CCceEEe--eeheecCCCcc
Confidence 222333344445555543333333445 788888777 8999999 999 9976654
Q ss_pred H-HHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeecCchh
Q 025642 117 P-VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 176 (250)
Q Consensus 117 ~-i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK~D 176 (250)
. .+ +..++..+.+.+++ +|.++.... .|.|+|+.+.-
T Consensus 173 ~~~i---~~~~~~~~~~~ivl----s~~la~~~~----------------~paI~vl~s~s 210 (249)
T cd01128 173 DDVI---FEEFKGTGNMELVL----DRRLAERRI----------------FPAIDILKSGT 210 (249)
T ss_pred cchH---HHHHhcCCCcEEEE----chHHhhCCC----------------CCeEEEcCCCC
Confidence 4 33 45555344444333 355443333 37887776543
No 472
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.39 E-value=1.7e-06 Score=66.71 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=61.3
Q ss_pred CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeecCchhh
Q 025642 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (250)
Q Consensus 98 ~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK~Dl 177 (250)
+.++.+.|.|++-+..... ....+..-.+++| +|+..-........-.............|.+-|++|+|+
T Consensus 44 ~~~~~l~D~~g~~~~~~~~-------~~~~~~~~~~i~v--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~ 114 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLR-------RLYYRGADGIILV--YDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDL 114 (157)
T ss_pred EEEEEEEecCChHHHHhHH-------HHHhcCCCEEEEE--EECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccc
Confidence 5578999999974333221 1122222233333 444432222222111122445566778999999999998
Q ss_pred hcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHhh
Q 025642 178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSMV 245 (250)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~~ 245 (250)
..... .+. . . .........-..+++.+..+.+.+..++..+.
T Consensus 115 ~~~~~-~~~------~------------~-------~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 115 PEERV-VSE------E------------E-------LAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred ccccc-hHH------H------------H-------HHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 65431 000 0 0 11122234457889999988888888877664
No 473
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.38 E-value=8.8e-06 Score=72.51 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
.+++++||+|+||||.+..++..+...+.+|.+...|+.+ ....-.+..+.+..++.-.... ...+ ..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r----------~~a~~ql~~~~~~~~i~~~~~~-~~~d-p~ 140 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR----------AAAIEQLEEWAKRLGVDVIKQK-EGAD-PA 140 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC----------HHHHHHHHHHHHhCCeEEEeCC-CCCC-HH
Confidence 5788899999999999999999888777799999888621 1111124445555553311000 0000 11
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCcc--CHHhHHHHHHHHHHHH
Q 025642 83 DNLDDWLAEELDNYLDDDYLVFDCPGQI--ELFTHVPVLRNFVDHL 126 (250)
Q Consensus 83 ~~ls~~la~aL~~~~~~~~lllDEPt~L--D~~~~~~i~~~ll~~l 126 (250)
......+..+... +-+++|+|.|+.. |.....++- ++.+..
T Consensus 141 ~~~~~~l~~~~~~--~~D~ViIDT~G~~~~d~~~~~el~-~~~~~~ 183 (272)
T TIGR00064 141 AVAFDAIQKAKAR--NIDVVLIDTAGRLQNKVNLMDELK-KIKRVI 183 (272)
T ss_pred HHHHHHHHHHHHC--CCCEEEEeCCCCCcchHHHHHHHH-HHHHHH
Confidence 1110223333445 7899999999983 444333333 444433
No 474
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.38 E-value=3.6e-07 Score=76.60 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEee
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~ 37 (250)
-.++|+|||||||||++++++|+++++.|.+.+.+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 35799999999999999999999999999888744
No 475
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.38 E-value=7.3e-07 Score=74.50 Aligned_cols=113 Identities=19% Similarity=0.400 Sum_probs=67.7
Q ss_pred CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeecCchhh
Q 025642 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (250)
Q Consensus 98 ~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK~Dl 177 (250)
...+-++|+||..| ...+....+..-+..++ ++|+..-..+... -........+.|.+-|+||+|+
T Consensus 69 ~~~i~~iDtPG~~~------f~~~~~~~~~~~D~ail---vVda~~g~~~~~~-----~~l~~~~~~~~p~ivvlNK~D~ 134 (188)
T PF00009_consen 69 NRKITLIDTPGHED------FIKEMIRGLRQADIAIL---VVDANDGIQPQTE-----EHLKILRELGIPIIVVLNKMDL 134 (188)
T ss_dssp SEEEEEEEESSSHH------HHHHHHHHHTTSSEEEE---EEETTTBSTHHHH-----HHHHHHHHTT-SEEEEEETCTS
T ss_pred ccceeecccccccc------eeecccceeccccccee---eeecccccccccc-----cccccccccccceEEeeeeccc
Confidence 56799999999744 23244445544344443 3455432222211 2233345778999999999999
Q ss_pred hcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhc-----CCceeEEeecCCHHHHHHHHHHhhhhh
Q 025642 178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-----SMVSFMPLDLRKESRYFLYLSSMVWCL 248 (250)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~-----~~~~f~~l~~~~~~~~~~~~~~~~~~~ 248 (250)
...+ +++ ...++.+++ ++.+ ..+.++|.+....+.+..|+..+++.+
T Consensus 135 ~~~~--~~~-------------------~~~~~~~~l---~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 135 IEKE--LEE-------------------IIEEIKEKL---LKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp SHHH--HHH-------------------HHHHHHHHH---HHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred hhhh--HHH-------------------HHHHHHHHh---ccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 7221 111 111222222 3333 357899999999999999999998875
No 476
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.37 E-value=5.7e-06 Score=65.49 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++||||||+++.+.+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 45799999999999999999873
No 477
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.36 E-value=5.6e-06 Score=69.68 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+.++|+|++|||||||++.+.+-
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 57899999999999999999874
No 478
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.35 E-value=1.9e-05 Score=73.79 Aligned_cols=79 Identities=24% Similarity=0.312 Sum_probs=42.5
Q ss_pred CEEEEeCCCccCHHhH-HHHHHHHHHHHHhCCCeEEEEEecccccc--ccHHHHHHhhHHhhhhH--hHhcCCeeeecCc
Q 025642 100 DYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAM--VQLELPHVNILSK 174 (250)
Q Consensus 100 ~~lllDEPt~LD~~~~-~~i~~~ll~~l~~~~~~vi~v~l~d~~~~--~d~~~~~s~~l~~~~~~--~~~~~p~v~vlsK 174 (250)
.+++.|.|+..+.... ..+..++++.+.+. . +++|++|.... .++..-.+.++--+... -..+.|.+-|+||
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra--d-vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNK 284 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERC--R-VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNK 284 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhC--C-EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeC
Confidence 5899999999664332 12333555555432 2 35566775532 23322222222111111 1136799999999
Q ss_pred hhhhcch
Q 025642 175 MDLVTNK 181 (250)
Q Consensus 175 ~Dl~~~~ 181 (250)
+|+..+.
T Consensus 285 iDl~~~~ 291 (390)
T PRK12298 285 IDLLDEE 291 (390)
T ss_pred CccCChH
Confidence 9997543
No 479
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.34 E-value=1.9e-05 Score=68.39 Aligned_cols=210 Identities=16% Similarity=0.154 Sum_probs=93.3
Q ss_pred EEEEcCCCCcHHHHHHHHH-cCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhh
Q 025642 5 QLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~-g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~ 83 (250)
++++|++|+|||||++.+. |...+..|..+. +.+-..+.+.- -++..-....+|+...|..+ ++...
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~-~~~~~~~E~~~--------g~t~~~~~~~~g~~~~~~~~---~~~~~ 69 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARL-NLFRHKHEVES--------GRTSSVSNEILGFDSDGEVV---NYPDN 69 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEe-ehhhhhhhhhc--------CchhhhhhhhcccCCCCcee---cCCCC
Confidence 5789999999999999998 455544443332 12211111100 00000011133444333111 11100
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccc-cccHHHHHHhhHHhhhhHh
Q 025642 84 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~-~~d~~~~~s~~l~~~~~~~ 162 (250)
.. .+-+.......+..+-++|.||. ....+..++.+.....-+ ++.++|+.. ..... .-......
T Consensus 70 ~~-~~~~~~~~~~~~~~i~liDtpG~------~~~~~~~~~~~~~~~~D~-~llVvda~~g~~~~d------~~~l~~l~ 135 (224)
T cd04165 70 HL-SESDIEICEKSSKLVTFIDLAGH------ERYLKTTLFGLTGYAPDY-AMLVVAANAGIIGMT------KEHLGLAL 135 (224)
T ss_pred cc-ccccceeeeeCCcEEEEEECCCc------HHHHHHHHHhhcccCCCE-EEEEEECCCCCcHHH------HHHHHHHH
Confidence 00 11111112212456889999995 222334444443211112 223345332 21111 11122234
Q ss_pred HhcCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhH----HHHHHHH--HHHHhhcCCceeEEeecCCHHH
Q 025642 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQF----AKLNKSL--IELVDEYSMVSFMPLDLRKESR 236 (250)
Q Consensus 163 ~~~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~l~~~~--~~~i~~~~~~~f~~l~~~~~~~ 236 (250)
..+.|.+-|+||+|++++. .++... ..+.+.+....-.+. .+....+ +.-..--+.+.+.+++..+.+-
T Consensus 136 ~~~ip~ivvvNK~D~~~~~-~~~~~~----~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~G 210 (224)
T cd04165 136 ALNIPVFVVVTKIDLAPAN-ILQETL----KDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEG 210 (224)
T ss_pred HcCCCEEEEEECccccCHH-HHHHHH----HHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccC
Confidence 5778999999999997643 222111 111111211000000 0000000 1111222346888999999998
Q ss_pred HHHHHHHhh
Q 025642 237 YFLYLSSMV 245 (250)
Q Consensus 237 ~~~~~~~~~ 245 (250)
+..|.+.+.
T Consensus 211 i~~L~~~L~ 219 (224)
T cd04165 211 LDLLHAFLN 219 (224)
T ss_pred HHHHHHHHH
Confidence 888887764
No 480
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.33 E-value=4.7e-06 Score=77.69 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
..++++|||||||||++..|++.+...+.+|.+...|+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 46899999999999999999998765555787777765
No 481
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.33 E-value=2.5e-06 Score=66.09 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEe
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~ 36 (250)
.+.|.||+|+||||+++.+++.+...+..+.+.
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 477999999999999999999876444555444
No 482
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.33 E-value=2.1e-05 Score=61.39 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+-++++|++|||||||++.+.+-.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998743
No 483
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.32 E-value=9.3e-06 Score=74.45 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=63.9
Q ss_pred CCCEEEEeCCCccCHHhH-HHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHh--HhcCCeeeecCc
Q 025642 98 DDDYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV--QLELPHVNILSK 174 (250)
Q Consensus 98 ~~~~lllDEPt~LD~~~~-~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~--~~~~p~v~vlsK 174 (250)
..++.+.|-|+.++-... ..+..++++.+.+. . +++|++|+........+ ..+.--+...- ..+.|.+-|+||
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a--~-vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NK 280 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT--R-LLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNK 280 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc--C-EEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEEC
Confidence 456999999998653322 22333555665432 2 35566776543222222 11111111110 136799999999
Q ss_pred hhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHhhhhh
Q 025642 175 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSMVWCL 248 (250)
Q Consensus 175 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 248 (250)
+|+.... ... . +.. .. ..++++ ..++|++..+.+-+..++..+.+.+
T Consensus 281 iDL~~~~-~~~-------~---~~~--------~~-------~~~~~~-~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 281 IDLLDEE-EER-------E---KRA--------AL-------ELAALG-GPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred cccCCch-hHH-------H---HHH--------HH-------HHHhcC-CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 9996543 100 0 000 00 012222 5678888888888888888776654
No 484
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.32 E-value=1.3e-05 Score=69.68 Aligned_cols=119 Identities=21% Similarity=0.263 Sum_probs=64.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc------------CCCCCCceEEEee-cCCccCCCCCCcccChhhhhhHHHHHHHhCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR------------HCETVRRTMHIVN-LDPAAENFDYPVAMDIRELISLEDVMEELGLG 69 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g------------~l~~~~G~i~i~~-~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~ 69 (250)
++..|+||+|+|||||+-.++- ...+..|+|.+.+ .++.. .+.+. +..+...+++.
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~---------~i~~R--l~~i~~~~~~~ 70 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPRE---------EIHRR--LEAILQHLEPD 70 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHH---------HHHHH--HHHHHhhcCCc
Confidence 4567999999999999988763 2233456665544 33321 01111 22233323221
Q ss_pred CCC-------Cchh--hh-----hhhhhhHHHHHHHHH-hcCCCCCEEEEeCCCc-------cCHHhHHHHHHHHHHHHH
Q 025642 70 PNG-------GLIY--CM-----EHLEDNLDDWLAEEL-DNYLDDDYLVFDCPGQ-------IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 70 ~~g-------~~~~--~~-----~~~~~~ls~~la~aL-~~~~~~~~lllDEPt~-------LD~~~~~~i~~~ll~~l~ 127 (250)
+.. +... +. ......+ ..+.+.+ .. +|+++|+| |.+ .|......++ +.++++.
T Consensus 71 ~~~~rl~~~~g~~~~l~~~~~~~~~~~~~~-~~l~~~~~~~--~~~lvviD-pl~~~~~~~~~d~~~~~~~~-~~L~~~a 145 (239)
T cd01125 71 DAGDRLFIDSGRIQPISIAREGRIIVVPEF-ERIIEQLLIR--RIDLVVID-PLVSFHGVSENDNGAMDAVI-KALRRIA 145 (239)
T ss_pred CcccceEEeccCCCceecccCCcccccHHH-HHHHHHHHhc--CCCEEEEC-ChHHhCCCCcCCHHHHHHHH-HHHHHHH
Confidence 110 0000 00 0011223 3333333 34 89999999 754 4777777777 6666665
Q ss_pred h-CCCeEEEEE
Q 025642 128 S-RNFNVCAVY 137 (250)
Q Consensus 128 ~-~~~~vi~v~ 137 (250)
+ .|.+++++|
T Consensus 146 ~~~g~avl~v~ 156 (239)
T cd01125 146 AQTGAAILLVH 156 (239)
T ss_pred HHhCCEEEEEe
Confidence 4 488888887
No 485
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.31 E-value=3.6e-07 Score=78.93 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--CCceEEEeecC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLD 39 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~i~i~~~d 39 (250)
++||.|||||||||+++.|.+.+.+ .++++.+...|
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D 38 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTD 38 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecC
Confidence 4799999999999999999999875 56778776555
No 486
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.30 E-value=1.4e-06 Score=70.65 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=35.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~ 42 (250)
++++|++||||||+++.++..+.+.++++.+.+.||..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~ 39 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSS 39 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 68999999999999999999999999999999999754
No 487
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.29 E-value=1.3e-05 Score=73.36 Aligned_cols=120 Identities=20% Similarity=0.266 Sum_probs=67.3
Q ss_pred CCEEEEeCCCccCHHhH-HHHHHHHHHHHHhCCCeEEEEEecccccc--ccHHHHHHhhHHhhhhH--hHhcCCeeeecC
Q 025642 99 DDYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAM--VQLELPHVNILS 173 (250)
Q Consensus 99 ~~~lllDEPt~LD~~~~-~~i~~~ll~~l~~~~~~vi~v~l~d~~~~--~d~~~~~s~~l~~~~~~--~~~~~p~v~vls 173 (250)
.++.|.|-|+.++-... ..+....++.+.+-. +++|++|+... .++..-+..+.--+... -..+.|.+-|+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad---~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~N 281 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTR---VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLN 281 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhC---EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEe
Confidence 57899999999653322 223334555553322 34455665543 24433333222212111 124689999999
Q ss_pred chhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHhhhhhc
Q 025642 174 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSMVWCLS 249 (250)
Q Consensus 174 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~ 249 (250)
|+|+.... ..+ ++-+.++ +.++ ..++|++..+.+-+..++..+.+.|+
T Consensus 282 K~DL~~~~-~~~-----------------------~~~~~l~---~~~~-~~vi~iSAktg~GI~eL~~~I~~~l~ 329 (329)
T TIGR02729 282 KIDLLDEE-ELA-----------------------ELLKELK---KALG-KPVFPISALTGEGLDELLYALAELLE 329 (329)
T ss_pred CccCCChH-HHH-----------------------HHHHHHH---HHcC-CcEEEEEccCCcCHHHHHHHHHHHhC
Confidence 99996432 111 0011111 1223 57899999999999999988877653
No 488
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.28 E-value=1e-06 Score=67.69 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 025642 5 QLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g 24 (250)
++|+|++|||||||++.+.|
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999997
No 489
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.28 E-value=1.9e-05 Score=69.24 Aligned_cols=97 Identities=24% Similarity=0.307 Sum_probs=56.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~ 83 (250)
.++|.|||||||||+++.+.+.+.+. .+.+.... .+..+..+. ...+...+|+.+.+... .....
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~--------~~~~~~~~~--l~~i~~~lG~~~~~~~~---~~~~~ 109 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLV--------NTRVDAEDL--LRMVAADFGLETEGRDK---AALLR 109 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeee--------CCCCCHHHH--HHHHHHHcCCCCCCCCH---HHHHH
Confidence 47899999999999999999887653 33322211 111233443 45566777876553211 11222
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHH
Q 025642 84 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~ 116 (250)
.+..++...... .++.++++||.-.++.....
T Consensus 110 ~l~~~l~~~~~~-~~~~vliiDe~~~l~~~~~~ 141 (269)
T TIGR03015 110 ELEDFLIEQFAA-GKRALLVVDEAQNLTPELLE 141 (269)
T ss_pred HHHHHHHHHHhC-CCCeEEEEECcccCCHHHHH
Confidence 332333333322 16679999996558866543
No 490
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.27 E-value=6e-06 Score=65.74 Aligned_cols=113 Identities=17% Similarity=0.181 Sum_probs=58.8
Q ss_pred CCCEEEEeCCCccCHHhHHHHHHHHHHHHHh-CCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeecCchh
Q 025642 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 176 (250)
Q Consensus 98 ~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~-~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK~D 176 (250)
+.++.+.|.||+-+......-- .+.+.... .+.. ++++++|.......... .......+.|.+-|+||+|
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~-~~~~~~~~~~~~d-~vi~v~d~~~~~~~~~~-------~~~~~~~~~~~iiv~NK~D 112 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDE-KVARDFLLGEKPD-LIVNVVDATNLERNLYL-------TLQLLELGLPVVVALNMID 112 (158)
T ss_pred CeEEEEEECCCccccCCCChhH-HHHHHHhcCCCCc-EEEEEeeCCcchhHHHH-------HHHHHHcCCCEEEEEehhh
Confidence 3468899999983332211000 11122111 2222 34455676543221111 1122346899999999999
Q ss_pred hhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHhhhh
Q 025642 177 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSMVWC 247 (250)
Q Consensus 177 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 247 (250)
+.... ... .+ ..++ .+.++ ..+.|++..+.+.+..++..+..-
T Consensus 113 l~~~~-~~~----~~---------------~~~~-------~~~~~-~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 113 EAEKR-GIK----ID---------------LDKL-------SELLG-VPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred hcccc-cch----hh---------------HHHH-------HHhhC-CCeEEEEccCCCCHHHHHHHHHHH
Confidence 96532 110 00 0111 11112 478899999988888888776543
No 491
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.27 E-value=1.9e-06 Score=80.30 Aligned_cols=128 Identities=20% Similarity=0.178 Sum_probs=74.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-CCCC---------C--------------CcccC-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-ENFD---------Y--------------PVAMD------- 52 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-~~~~---------y--------------~~~~~------- 52 (250)
+.+++|.||-||||-+++++|-++|.-|.-- ..|.+ +-+. | +|.++
T Consensus 102 vlglvgtngigkstAlkilagk~kpnlg~~~---~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~k 178 (592)
T KOG0063|consen 102 VLGLVGTNGIGKSTALKILAGKQKPNLGRYD---NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAVK 178 (592)
T ss_pred hccccccCcccHHHHHHHHhCCCCCCCCCCC---CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHHH
Confidence 4689999999999999999999999877531 11211 1111 1 11111
Q ss_pred --hhhhhh-------HHHHHHHhCCCCCCCchhhhhh--hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 53 --IRELIS-------LEDVMEELGLGPNGGLIYCMEH--LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 53 --i~~~i~-------~~~vm~~~~L~~~g~~~~~~~~--~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
+...+. .+++++.+.|+.-... ..+. ..+-++.++|.+... +.++.+||||.+ +|...+....
T Consensus 179 ~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~r--e~~~lsggelqrfaia~~~vq--~advyMFDEpSsYLDVKQRLkaA- 253 (592)
T KOG0063|consen 179 GTVGSLLDRKDERDNKEEVCDQLDLNNLLDR--EVEQLSGGELQRFAIAMVCVQ--KADVYMFDEPSSYLDVKQRLKAA- 253 (592)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHhhHHHh--hhhhcccchhhhhhhhhhhhh--hcceeEecCCcccchHHHhhhHH-
Confidence 111111 3334444433321100 0011 111123667777667 999999999999 9999998887
Q ss_pred HHHHHHHhC-CCeEEEEEec
Q 025642 121 NFVDHLKSR-NFNVCAVYLL 139 (250)
Q Consensus 121 ~ll~~l~~~-~~~vi~v~l~ 139 (250)
..++.+..- ...+++.|.+
T Consensus 254 ~~IRsl~~p~~YiIVVEHDL 273 (592)
T KOG0063|consen 254 ITIRSLINPDRYIIVVEHDL 273 (592)
T ss_pred HHHHHhhCCCCeEEEEEeec
Confidence 788888654 4444444533
No 492
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.26 E-value=3e-06 Score=71.22 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCC-CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 88 WLAEELDNYLDD-DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 88 ~la~aL~~~~~~-~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
.+...+....+. .++++|||-. |.|..++.++ ++++.+.+.+..++++
T Consensus 246 ~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~Qviit 295 (303)
T PF13304_consen 246 SLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQVIIT 295 (303)
T ss_dssp HHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSEEEEE
T ss_pred HHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCEEEEe
Confidence 455555543233 8999999999 9999999988 8887775545556544
No 493
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.26 E-value=7.2e-06 Score=77.45 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=58.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC--CCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~--~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
+++++||+|+||||++..|+..+. ..+.+|.+...|+..- + -.+ .+..+.+.+++..... ..
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~--~------a~e--qL~~~a~~~~vp~~~~------~~ 286 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI--G------AVE--QLKTYAKIMGIPVEVV------YD 286 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH--H------HHH--HHHHHHHHhCCceEcc------CC
Confidence 678999999999999999988765 3345788888776320 0 001 1222333344432110 11
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc--cCHHhHHHHHHHHHH
Q 025642 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVD 124 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~~lllDEPt~--LD~~~~~~i~~~ll~ 124 (250)
...+ +.++....+.+++|+|+||. .|......+. .+++
T Consensus 287 ~~~l----~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~-~ll~ 326 (424)
T PRK05703 287 PKEL----AKALEQLRDCDVILIDTAGRSQRDKRLIEELK-ALIE 326 (424)
T ss_pred HHhH----HHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHH-HHHh
Confidence 1122 23333222679999999988 6666555544 5555
No 494
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.26 E-value=3.7e-05 Score=60.85 Aligned_cols=110 Identities=11% Similarity=0.138 Sum_probs=59.5
Q ss_pred CCCEEEEeCCCccCHHh--HHHHHHHHHHHHHhCCCeEEEEEeccccc-cccHHHHHHhhHHhhhhHhHhcCCeeeecCc
Q 025642 98 DDDYLVFDCPGQIELFT--HVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSK 174 (250)
Q Consensus 98 ~~~~lllDEPt~LD~~~--~~~i~~~ll~~l~~~~~~vi~v~l~d~~~-~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK 174 (250)
+.++.++|.||.-+... ...+.......+.+-+ + +++++|+.. .......+ ...+-..+.|.+-|+||
T Consensus 44 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d--~-ii~v~d~~~~~~~~~~~~------~~~~~~~~~piiiv~nK 114 (157)
T cd01894 44 GREFILIDTGGIEPDDEGISKEIREQAELAIEEAD--V-ILFVVDGREGLTPADEEI------AKYLRKSKKPVILVVNK 114 (157)
T ss_pred CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC--E-EEEEEeccccCCccHHHH------HHHHHhcCCCEEEEEEC
Confidence 34689999999833222 1222212222232222 2 334455533 21111111 11122456899999999
Q ss_pred hhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHhhhh
Q 025642 175 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSMVWC 247 (250)
Q Consensus 175 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 247 (250)
+|+...... .+.+...+...+.+.+..+.+.+..+...+.++
T Consensus 115 ~D~~~~~~~-------------------------------~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 115 VDNIKEEDE-------------------------------AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred cccCChHHH-------------------------------HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 999653310 011223444568899999999998888887664
No 495
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.25 E-value=1.1e-06 Score=67.62 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
+++|+||+|||||||++++. +|++.+.|.|.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di 47 (107)
T cd00820 17 GVLITGDSGIGKTELALELI------KRKHRLVGDDN 47 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeH
Confidence 57999999999999999986 78999998776
No 496
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.24 E-value=2.4e-05 Score=63.30 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=39.8
Q ss_pred HhcCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHH
Q 025642 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLS 242 (250)
Q Consensus 163 ~~~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~ 242 (250)
..+.|.+-|.||+|+.... .. . .+...++.+.++...+.|.+..+.+.+..++.
T Consensus 106 ~~~~p~ivv~nK~Dl~~~~-~~------~-------------------~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 106 ASNVVLLLIGNKCDLEEQR-EV------L-------------------FEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred CCCCcEEEEEECccccccc-cc------C-------------------HHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 3578899999999996432 00 0 01112334457777889999999999999888
Q ss_pred Hhhh
Q 025642 243 SMVW 246 (250)
Q Consensus 243 ~~~~ 246 (250)
.|-+
T Consensus 160 ~l~~ 163 (165)
T cd01864 160 LMAT 163 (165)
T ss_pred HHHH
Confidence 7754
No 497
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.24 E-value=2e-05 Score=66.30 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
-++++|++|+|||||++.+.+-
T Consensus 2 KivivG~~~vGKTsli~~l~~~ 23 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHG 23 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999999988753
No 498
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.23 E-value=1.9e-05 Score=66.91 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
..++++|..|+|||||+..|.+..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~ 26 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVL 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998753
No 499
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.20 E-value=1.8e-05 Score=73.54 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=51.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCC--ceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR--RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~--G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~ 80 (250)
-+++++||||+||||++..|++.+.... .+|.+...|... ..-.+. +..+-+.+|+.-.. -.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R--------~ga~Eq--L~~~a~~~gv~~~~------~~ 201 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR--------IGGHEQ--LRIFGKILGVPVHA------VK 201 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc--------ccHHHH--HHHHHHHcCCceEe------cC
Confidence 3688999999999999999998754332 367666655321 011222 22333444543211 00
Q ss_pred hhhhHHHHHHHHHhcCCCCCEEEEeCCCc--cCHH
Q 025642 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELF 113 (250)
Q Consensus 81 ~~~~ls~~la~aL~~~~~~~~lllDEPt~--LD~~ 113 (250)
-...+ ..++..+.+.+++++|+||. .|..
T Consensus 202 ~~~~l----~~~l~~l~~~DlVLIDTaG~~~~d~~ 232 (374)
T PRK14722 202 DGGDL----QLALAELRNKHMVLIDTIGMSQRDRT 232 (374)
T ss_pred CcccH----HHHHHHhcCCCEEEEcCCCCCcccHH
Confidence 01112 22333222789999999997 4554
No 500
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.20 E-value=3.1e-06 Score=86.26 Aligned_cols=112 Identities=15% Similarity=0.217 Sum_probs=61.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-CCCCceEEEeecCCccC-CCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPAAE-NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l-~~~~G~i~i~~~dp~~~-~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
++.|.|||++||||++|.++-.. -+.-|.. -|+.. .+++ ++.++.+.|-..+- ......+
T Consensus 609 ~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~-----VPa~~a~i~~-----------~d~I~triga~d~i--~~g~STF 670 (854)
T PRK05399 609 LLLITGPNMAGKSTYMRQVALIVLLAQIGSF-----VPAESARIGI-----------VDRIFTRIGASDDL--ASGRSTF 670 (854)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHHhcCCc-----eeccceEecc-----------cCeeeeccCccccc--ccCcccH
Confidence 57899999999999999976431 1222221 12211 1111 11223333332221 1112344
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEE
Q 025642 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVC 134 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~vi 134 (250)
...+ ..++..+...+++.++|+||||. -++..-..+...+++.+.+. +.+++
T Consensus 671 ~~E~-~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l 724 (854)
T PRK05399 671 MVEM-TETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTL 724 (854)
T ss_pred HHHH-HHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEE
Confidence 4455 66666666555889999999944 33333444555788888765 34443
Done!