Query 025642
Match_columns 250
No_of_seqs 350 out of 3206
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 14:30:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 99.9 9.6E-27 3.3E-31 205.8 7.8 151 4-162 36-222 (275)
2 3tui_C Methionine import ATP-b 99.9 4.5E-26 1.5E-30 208.5 10.8 162 4-173 56-253 (366)
3 2onk_A Molybdate/tungstate ABC 99.9 7.3E-26 2.5E-30 196.3 9.7 149 4-159 26-202 (240)
4 2pcj_A ABC transporter, lipopr 99.9 2.2E-25 7.7E-30 191.2 11.1 130 4-137 32-197 (224)
5 2olj_A Amino acid ABC transpor 99.9 1.6E-25 5.5E-30 196.7 10.3 146 4-157 52-232 (263)
6 1b0u_A Histidine permease; ABC 99.9 1.3E-25 4.4E-30 197.1 8.9 146 4-157 34-226 (262)
7 1vpl_A ABC transporter, ATP-bi 99.9 3.4E-25 1.2E-29 193.9 11.3 145 4-156 43-218 (256)
8 3tif_A Uncharacterized ABC tra 99.9 2.4E-25 8.2E-30 192.4 10.1 145 4-156 33-217 (235)
9 3fvq_A Fe(3+) IONS import ATP- 99.9 2.5E-25 8.4E-30 203.3 10.2 151 4-161 32-216 (359)
10 1ji0_A ABC transporter; ATP bi 99.9 2.4E-25 8.2E-30 192.9 8.7 146 4-157 34-212 (240)
11 4g1u_C Hemin import ATP-bindin 99.9 4.9E-25 1.7E-29 193.8 10.6 154 4-163 39-227 (266)
12 3rlf_A Maltose/maltodextrin im 99.9 6.9E-25 2.4E-29 201.7 11.7 150 4-161 31-211 (381)
13 1sgw_A Putative ABC transporte 99.9 1.3E-24 4.5E-29 185.4 11.7 141 4-153 37-202 (214)
14 1g6h_A High-affinity branched- 99.9 1.2E-24 4.1E-29 190.3 11.5 146 4-157 35-226 (257)
15 2yyz_A Sugar ABC transporter, 99.9 9.5E-25 3.2E-29 199.6 10.2 148 4-159 31-209 (359)
16 2it1_A 362AA long hypothetical 99.9 1.1E-24 3.8E-29 199.3 10.5 149 4-160 31-210 (362)
17 3d31_A Sulfate/molybdate ABC t 99.9 1.4E-24 4.8E-29 197.7 10.8 149 4-160 28-204 (348)
18 1z47_A CYSA, putative ABC-tran 99.9 1.9E-24 6.4E-29 197.3 11.6 149 4-160 43-222 (355)
19 2ihy_A ABC transporter, ATP-bi 99.9 4.1E-25 1.4E-29 195.7 6.5 145 4-156 49-235 (279)
20 2yz2_A Putative ABC transporte 99.9 1.9E-24 6.5E-29 190.0 10.6 146 4-157 35-211 (266)
21 1oxx_K GLCV, glucose, ABC tran 99.9 2.1E-24 7.2E-29 197.0 9.9 149 4-160 33-217 (353)
22 1g29_1 MALK, maltose transport 99.9 3.4E-24 1.2E-28 196.8 11.4 149 4-160 31-216 (372)
23 1v43_A Sugar-binding transport 99.9 3.3E-24 1.1E-28 196.8 11.0 149 4-160 39-218 (372)
24 2qi9_C Vitamin B12 import ATP- 99.9 6.4E-24 2.2E-28 185.1 10.4 144 4-156 28-205 (249)
25 2d2e_A SUFC protein; ABC-ATPas 99.9 1.1E-23 3.7E-28 183.5 8.5 139 4-150 31-209 (250)
26 2nq2_C Hypothetical ABC transp 99.9 5.2E-23 1.8E-27 179.7 12.8 143 4-156 33-201 (253)
27 2pjz_A Hypothetical protein ST 99.9 2.4E-23 8.1E-28 182.9 8.0 142 4-157 32-199 (263)
28 2ff7_A Alpha-hemolysin translo 99.9 6.5E-23 2.2E-27 178.4 9.4 130 4-137 37-201 (247)
29 2ixe_A Antigen peptide transpo 99.9 2.8E-23 9.4E-28 183.1 6.8 130 4-137 47-214 (271)
30 2zu0_C Probable ATP-dependent 99.9 9.3E-23 3.2E-27 179.3 8.8 138 4-148 48-228 (267)
31 1mv5_A LMRA, multidrug resista 99.9 5.8E-23 2E-27 178.1 7.1 130 4-137 30-195 (243)
32 3nh6_A ATP-binding cassette SU 99.9 2.4E-22 8.1E-27 180.1 5.5 135 4-146 82-251 (306)
33 3ozx_A RNAse L inhibitor; ATP 99.8 2E-21 6.9E-26 186.1 10.4 147 4-158 296-460 (538)
34 2ghi_A Transport protein; mult 99.8 6.4E-22 2.2E-26 173.3 6.1 129 4-137 48-211 (260)
35 2pze_A Cystic fibrosis transme 99.8 4.4E-22 1.5E-26 171.2 4.0 128 4-136 36-186 (229)
36 2cbz_A Multidrug resistance-as 99.8 3E-21 1E-25 166.9 8.0 134 4-146 33-191 (237)
37 1yqt_A RNAse L inhibitor; ATP- 99.8 1.2E-20 4.2E-25 180.7 10.6 144 4-155 49-229 (538)
38 3bk7_A ABC transporter ATP-bin 99.8 2.7E-20 9.3E-25 180.6 12.7 144 4-157 384-545 (607)
39 3b5x_A Lipid A export ATP-bind 99.8 1.2E-20 4.2E-25 182.1 8.9 130 4-137 371-536 (582)
40 3ozx_A RNAse L inhibitor; ATP 99.8 1.8E-20 6.2E-25 179.5 9.7 143 4-155 27-208 (538)
41 3bk7_A ABC transporter ATP-bin 99.8 1.8E-20 6.1E-25 181.8 9.2 143 4-154 119-298 (607)
42 3gd7_A Fusion complex of cysti 99.8 2.2E-20 7.6E-25 172.4 9.0 128 4-137 49-211 (390)
43 1yqt_A RNAse L inhibitor; ATP- 99.8 2.7E-20 9.2E-25 178.3 9.7 145 4-158 314-476 (538)
44 2yl4_A ATP-binding cassette SU 99.8 3.3E-20 1.1E-24 179.5 10.4 147 4-160 372-557 (595)
45 3b60_A Lipid A export ATP-bind 99.8 2.6E-20 8.7E-25 179.8 9.4 129 4-136 371-535 (582)
46 3j16_B RLI1P; ribosome recycli 99.8 8E-20 2.7E-24 177.2 11.2 142 4-158 380-542 (608)
47 4a82_A Cystic fibrosis transme 99.8 2.7E-20 9.1E-25 179.6 7.5 129 4-136 369-532 (578)
48 3qf4_B Uncharacterized ABC tra 99.8 2.6E-20 8.8E-25 180.4 6.8 134 4-146 383-552 (598)
49 1yrb_A ATP(GTP)binding protein 99.8 8.1E-19 2.8E-23 151.5 14.8 237 2-248 14-255 (262)
50 3qf4_A ABC transporter, ATP-bi 99.8 6.2E-20 2.1E-24 177.4 8.4 129 4-137 371-535 (587)
51 3j16_B RLI1P; ribosome recycli 99.8 5.7E-20 2E-24 178.2 7.6 146 4-156 105-293 (608)
52 2bbs_A Cystic fibrosis transme 99.8 2.5E-20 8.4E-25 165.8 4.4 133 4-145 66-220 (290)
53 3g5u_A MCG1178, multidrug resi 99.7 2.4E-18 8E-23 179.2 5.8 134 4-146 1061-1232(1284)
54 3g5u_A MCG1178, multidrug resi 99.7 9.4E-18 3.2E-22 174.7 7.9 125 4-136 418-581 (1284)
55 3b85_A Phosphate starvation-in 99.7 1.5E-18 5.2E-23 147.2 1.3 107 4-134 24-153 (208)
56 3ux8_A Excinuclease ABC, A sub 99.7 1.4E-16 4.9E-21 155.9 14.2 73 62-137 185-261 (670)
57 4f4c_A Multidrug resistance pr 99.7 3.2E-17 1.1E-21 171.1 9.4 133 4-145 1107-1277(1321)
58 4f4c_A Multidrug resistance pr 99.7 2.7E-16 9.1E-21 164.2 13.3 125 4-136 446-609 (1321)
59 2iw3_A Elongation factor 3A; a 99.6 4.4E-17 1.5E-21 164.5 4.9 87 59-155 880-969 (986)
60 4gp7_A Metallophosphoesterase; 99.6 2.3E-17 7.9E-22 135.0 1.9 52 83-137 88-156 (171)
61 2iw3_A Elongation factor 3A; a 99.6 6.7E-16 2.3E-20 155.9 10.0 139 4-156 463-617 (986)
62 1tq4_A IIGP1, interferon-induc 99.6 7.2E-17 2.5E-21 149.9 0.9 149 3-156 70-249 (413)
63 2npi_A Protein CLP1; CLP1-PCF1 99.6 1.7E-16 5.9E-21 149.2 1.4 121 4-136 140-294 (460)
64 3ux8_A Excinuclease ABC, A sub 99.6 1.3E-14 4.3E-19 142.1 13.3 76 59-137 523-603 (670)
65 1ye8_A Protein THEP1, hypothet 99.6 2.1E-15 7.2E-20 124.6 6.3 130 4-150 2-149 (178)
66 2eyu_A Twitching motility prot 99.5 4.5E-14 1.5E-18 123.5 10.5 117 4-156 27-144 (261)
67 3szr_A Interferon-induced GTP- 99.5 3E-15 1E-19 145.3 3.1 157 5-181 48-230 (608)
68 2pt7_A CAG-ALFA; ATPase, prote 99.5 8.3E-14 2.8E-18 125.7 12.1 116 4-158 173-288 (330)
69 3b9q_A Chloroplast SRP recepto 99.5 2.6E-14 8.8E-19 127.6 8.0 147 3-171 101-279 (302)
70 2vf7_A UVRA2, excinuclease ABC 99.5 1E-14 3.5E-19 145.7 4.4 75 59-137 710-790 (842)
71 2og2_A Putative signal recogni 99.5 1.5E-13 5.2E-18 125.4 11.1 148 3-172 158-337 (359)
72 2ehv_A Hypothetical protein PH 99.5 2.2E-14 7.4E-19 122.2 5.2 124 4-137 32-179 (251)
73 4aby_A DNA repair protein RECN 99.5 1.1E-13 3.7E-18 127.3 8.9 50 84-137 301-353 (415)
74 3pih_A Uvrabc system protein A 99.4 2.3E-13 7.9E-18 137.0 10.1 77 59-136 785-864 (916)
75 1znw_A Guanylate kinase, GMP k 99.4 2.2E-15 7.5E-20 126.5 -4.5 58 92-156 137-200 (207)
76 3sop_A Neuronal-specific septi 99.4 6.6E-14 2.3E-18 123.0 2.8 39 2-40 2-40 (270)
77 2r6f_A Excinuclease ABC subuni 99.4 2.2E-12 7.4E-17 129.9 13.1 74 60-137 826-905 (972)
78 4a74_A DNA repair and recombin 99.4 3.8E-13 1.3E-17 113.0 6.1 36 4-39 27-69 (231)
79 3jvv_A Twitching mobility prot 99.4 1.1E-12 3.7E-17 119.6 9.5 118 4-157 125-243 (356)
80 2ygr_A Uvrabc system protein A 99.4 2.4E-12 8.1E-17 129.9 12.3 74 60-137 844-923 (993)
81 2kjq_A DNAA-related protein; s 99.3 2.5E-12 8.7E-17 103.0 8.3 100 4-155 38-140 (149)
82 2w0m_A SSO2452; RECA, SSPF, un 99.3 2.6E-12 9E-17 107.6 8.4 125 4-137 25-165 (235)
83 1e69_A Chromosome segregation 99.3 1.1E-11 3.9E-16 110.9 12.4 49 86-136 227-278 (322)
84 1rj9_A FTSY, signal recognitio 99.3 5.1E-12 1.7E-16 112.8 9.9 150 3-172 103-281 (304)
85 1tf7_A KAIC; homohexamer, hexa 99.3 1.7E-12 5.9E-17 123.6 5.6 124 4-137 283-414 (525)
86 3thx_A DNA mismatch repair pro 99.3 3.9E-12 1.3E-16 128.5 8.0 107 4-137 664-782 (934)
87 3qf7_A RAD50; ABC-ATPase, ATPa 99.3 5.2E-12 1.8E-16 115.3 7.2 49 86-137 287-342 (365)
88 2ewv_A Twitching motility prot 99.3 1.1E-11 3.9E-16 113.3 9.0 116 4-156 138-255 (372)
89 3aez_A Pantothenate kinase; tr 99.2 7.3E-13 2.5E-17 118.7 0.4 106 3-112 91-209 (312)
90 1tf7_A KAIC; homohexamer, hexa 99.2 1.1E-12 3.9E-17 124.8 1.7 126 4-137 41-182 (525)
91 3ec2_A DNA replication protein 99.2 1.3E-11 4.3E-16 100.7 6.7 99 3-137 39-140 (180)
92 1cr0_A DNA primase/helicase; R 99.2 8.2E-12 2.8E-16 109.9 5.9 126 4-137 37-194 (296)
93 2i3b_A HCR-ntpase, human cance 99.2 5.4E-13 1.8E-17 111.3 -3.2 35 4-40 3-37 (189)
94 3e70_C DPA, signal recognition 99.2 3.6E-11 1.2E-15 108.4 8.0 149 3-172 130-302 (328)
95 2o8b_B DNA mismatch repair pro 99.2 6.7E-12 2.3E-16 128.0 3.2 123 3-149 790-917 (1022)
96 1pzn_A RAD51, DNA repair and r 99.2 1.7E-11 5.7E-16 111.3 5.5 38 3-40 132-176 (349)
97 3thx_B DNA mismatch repair pro 99.2 2.2E-11 7.6E-16 122.7 6.7 47 87-136 744-792 (918)
98 1ewq_A DNA mismatch repair pro 99.1 3.1E-11 1.1E-15 119.8 5.6 104 4-136 578-694 (765)
99 3qkt_A DNA double-strand break 99.1 3.4E-10 1.2E-14 102.0 10.6 48 87-137 263-311 (339)
100 1nlf_A Regulatory protein REPA 99.1 9E-11 3.1E-15 102.5 6.0 127 4-137 32-178 (279)
101 1z6g_A Guanylate kinase; struc 99.1 4.6E-12 1.6E-16 107.4 -2.3 111 4-126 25-173 (218)
102 2cvh_A DNA repair and recombin 99.1 1.2E-09 4.2E-14 90.8 11.7 116 4-137 22-153 (220)
103 3asz_A Uridine kinase; cytidin 99.1 4E-12 1.4E-16 106.1 -3.9 121 3-133 7-154 (211)
104 1s96_A Guanylate kinase, GMP k 99.0 6.7E-11 2.3E-15 100.7 3.2 112 4-136 18-136 (219)
105 1wb9_A DNA mismatch repair pro 99.0 1.7E-10 5.7E-15 115.1 6.1 112 4-136 609-726 (800)
106 1n0w_A DNA repair protein RAD5 99.0 2.2E-09 7.4E-14 90.7 12.0 36 4-39 26-68 (243)
107 1vma_A Cell division protein F 99.0 1.1E-09 3.9E-14 97.7 8.7 89 3-109 105-197 (306)
108 1ls1_A Signal recognition part 99.0 4.3E-09 1.5E-13 93.3 11.5 108 3-126 99-209 (295)
109 1sxj_E Activator 1 40 kDa subu 98.9 1.3E-09 4.4E-14 97.4 7.9 116 5-136 39-170 (354)
110 1lw7_A Transcriptional regulat 98.9 4.6E-10 1.6E-14 102.0 4.6 126 4-136 172-325 (365)
111 2www_A Methylmalonic aciduria 98.9 8.8E-09 3E-13 93.3 12.8 41 3-43 75-115 (349)
112 2dpy_A FLII, flagellum-specifi 98.9 6.8E-10 2.3E-14 103.7 5.4 143 4-162 159-333 (438)
113 2obl_A ESCN; ATPase, hydrolase 98.9 1.8E-09 6.2E-14 97.9 7.7 148 4-164 73-246 (347)
114 2bbw_A Adenylate kinase 4, AK4 98.9 1.7E-10 6E-15 98.8 0.4 37 3-39 28-67 (246)
115 2gza_A Type IV secretion syste 98.9 6.4E-09 2.2E-13 94.6 10.8 124 4-158 177-300 (361)
116 1htw_A HI0065; nucleotide-bind 98.9 5.7E-10 1.9E-14 90.3 2.3 36 4-40 35-70 (158)
117 2px0_A Flagellar biosynthesis 98.9 7.6E-09 2.6E-13 91.8 9.6 87 3-109 106-193 (296)
118 3lda_A DNA repair protein RAD5 98.8 1.1E-08 3.6E-13 94.6 10.2 118 4-137 180-325 (400)
119 2p67_A LAO/AO transport system 98.8 1E-08 3.5E-13 92.4 9.9 40 3-42 57-96 (341)
120 2qag_C Septin-7; cell cycle, c 98.8 4.2E-09 1.4E-13 97.8 6.4 29 3-31 32-60 (418)
121 2yhs_A FTSY, cell division pro 98.8 1.1E-08 3.7E-13 96.7 8.8 38 3-40 294-331 (503)
122 1pui_A ENGB, probable GTP-bind 98.8 3.2E-09 1.1E-13 87.7 3.9 124 3-130 27-200 (210)
123 3pqc_A Probable GTP-binding pr 98.8 4.8E-07 1.6E-11 72.9 16.7 121 98-248 67-192 (195)
124 2qag_B Septin-6, protein NEDD5 98.7 6.7E-09 2.3E-13 96.6 5.6 49 85-136 165-215 (427)
125 3lxx_A GTPase IMAP family memb 98.7 2E-07 6.8E-12 79.1 14.1 27 3-29 30-56 (239)
126 2dr3_A UPF0273 protein PH0284; 98.7 2.6E-08 8.8E-13 84.0 8.3 40 98-137 128-170 (247)
127 2v9p_A Replication protein E1; 98.7 5.7E-10 1.9E-14 99.6 -2.6 96 4-119 128-233 (305)
128 4dhe_A Probable GTP-binding pr 98.7 1.7E-06 5.7E-11 71.7 17.6 125 98-248 78-209 (223)
129 3kl4_A SRP54, signal recogniti 98.7 1.5E-07 5.3E-12 87.6 12.3 152 2-180 97-253 (433)
130 2qnr_A Septin-2, protein NEDD5 98.7 3.8E-08 1.3E-12 87.3 7.8 36 3-39 19-55 (301)
131 3k53_A Ferrous iron transport 98.6 1.2E-07 4.2E-12 82.2 9.9 24 3-26 4-27 (271)
132 3euj_A Chromosome partition pr 98.6 6.6E-09 2.3E-13 98.0 1.8 37 4-40 31-67 (483)
133 1oix_A RAS-related protein RAB 98.6 8.7E-08 3E-12 78.4 8.0 36 3-38 30-76 (191)
134 3p32_A Probable GTPase RV1496/ 98.6 4.1E-07 1.4E-11 82.2 12.2 42 2-43 79-120 (355)
135 1j8m_F SRP54, signal recogniti 98.6 6.1E-07 2.1E-11 79.5 13.0 95 3-111 99-193 (297)
136 1svi_A GTP-binding protein YSX 98.6 4E-06 1.4E-10 67.8 16.7 121 98-248 68-193 (195)
137 1zp6_A Hypothetical protein AT 98.6 3.5E-08 1.2E-12 80.4 4.3 35 3-39 10-44 (191)
138 1sq5_A Pantothenate kinase; P- 98.6 3E-08 1E-12 88.1 4.0 35 3-37 81-117 (308)
139 2zr9_A Protein RECA, recombina 98.6 1.8E-07 6.2E-12 84.7 9.0 89 4-110 63-152 (349)
140 2dyk_A GTP-binding protein; GT 98.6 5.5E-07 1.9E-11 70.3 10.7 110 98-247 48-159 (161)
141 2qm8_A GTPase/ATPase; G protei 98.5 2.3E-08 8E-13 90.1 2.6 40 3-42 56-95 (337)
142 2bdt_A BH3686; alpha-beta prot 98.5 5.8E-08 2E-12 79.3 3.9 37 1-40 1-37 (189)
143 3a00_A Guanylate kinase, GMP k 98.5 3.5E-08 1.2E-12 80.9 2.4 29 4-32 3-31 (186)
144 3t34_A Dynamin-related protein 98.5 5.3E-07 1.8E-11 81.5 10.4 30 4-33 36-67 (360)
145 3i8s_A Ferrous iron transport 98.5 2.4E-07 8.2E-12 80.8 7.6 24 2-25 3-26 (274)
146 1zu4_A FTSY; GTPase, signal re 98.5 1.6E-07 5.4E-12 84.2 6.5 39 3-41 106-144 (320)
147 1kao_A RAP2A; GTP-binding prot 98.5 4.5E-06 1.5E-10 65.0 14.0 22 3-24 4-25 (167)
148 3tqc_A Pantothenate kinase; bi 98.5 8.9E-08 3E-12 85.9 4.1 39 2-40 92-132 (321)
149 1u0l_A Probable GTPase ENGC; p 98.4 8.5E-08 2.9E-12 84.9 3.7 37 4-40 171-210 (301)
150 3dm5_A SRP54, signal recogniti 98.4 1.1E-05 3.8E-10 75.2 18.1 102 2-117 100-203 (443)
151 1qhl_A Protein (cell division 98.4 1.3E-08 4.5E-13 87.0 -1.6 36 5-40 30-65 (227)
152 1p9r_A General secretion pathw 98.4 9.2E-08 3.1E-12 88.8 3.9 37 4-40 169-205 (418)
153 2ce2_X GTPase HRAS; signaling 98.4 1.2E-06 4.3E-11 68.1 9.9 23 3-25 4-26 (166)
154 2f1r_A Molybdopterin-guanine d 98.4 2.5E-08 8.6E-13 81.6 -0.1 39 1-39 1-42 (171)
155 3c8u_A Fructokinase; YP_612366 98.4 5.4E-08 1.8E-12 81.2 1.9 37 3-39 23-62 (208)
156 3iev_A GTP-binding protein ERA 98.4 6.9E-07 2.4E-11 79.2 9.2 23 3-25 11-33 (308)
157 1fnn_A CDC6P, cell division co 98.4 7.4E-07 2.5E-11 79.9 9.3 115 4-136 46-165 (389)
158 1ega_A Protein (GTP-binding pr 98.4 2.2E-06 7.6E-11 75.7 12.2 23 3-25 9-31 (301)
159 2ffh_A Protein (FFH); SRP54, s 98.4 8E-06 2.7E-10 75.9 16.3 39 3-41 99-137 (425)
160 2a9k_A RAS-related protein RAL 98.4 4.6E-06 1.6E-10 66.4 12.9 23 3-25 19-41 (187)
161 1udx_A The GTP-binding protein 98.4 6.4E-08 2.2E-12 89.8 2.0 60 87-156 261-321 (416)
162 2wjg_A FEOB, ferrous iron tran 98.4 9.3E-07 3.2E-11 71.1 8.7 23 3-25 8-30 (188)
163 1f2t_B RAD50 ABC-ATPase; DNA d 98.4 2.9E-07 1E-11 73.5 5.6 46 89-137 74-120 (148)
164 1rz3_A Hypothetical protein rb 98.4 1E-07 3.6E-12 79.0 2.8 38 3-40 23-60 (201)
165 1c1y_A RAS-related protein RAP 98.4 6.1E-06 2.1E-10 64.5 12.7 59 164-248 107-165 (167)
166 1ky3_A GTP-binding protein YPT 98.4 1.8E-06 6E-11 68.6 9.6 23 3-25 9-31 (182)
167 1lvg_A Guanylate kinase, GMP k 98.4 1E-07 3.5E-12 79.2 2.2 24 4-27 6-29 (198)
168 3tr0_A Guanylate kinase, GMP k 98.4 1.9E-07 6.4E-12 76.8 3.4 32 3-38 8-39 (205)
169 3hr8_A Protein RECA; alpha and 98.4 2.2E-06 7.6E-11 77.8 10.8 88 4-109 63-150 (356)
170 1u8z_A RAS-related protein RAL 98.3 6.5E-06 2.2E-10 64.1 12.1 23 3-25 5-27 (168)
171 3iby_A Ferrous iron transport 98.3 3.2E-06 1.1E-10 73.0 11.2 22 4-25 3-24 (256)
172 2gj8_A MNME, tRNA modification 98.3 8.9E-07 3E-11 71.1 6.8 24 3-26 5-28 (172)
173 3b1v_A Ferrous iron uptake tra 98.3 9.8E-06 3.4E-10 70.7 13.8 24 2-25 3-26 (272)
174 2oap_1 GSPE-2, type II secreti 98.3 2.9E-07 9.9E-12 87.5 4.2 36 4-39 262-297 (511)
175 1nij_A Hypothetical protein YJ 98.3 1.7E-07 5.8E-12 83.6 2.5 39 3-41 5-51 (318)
176 2yv5_A YJEQ protein; hydrolase 98.3 3E-07 1E-11 81.5 3.9 37 3-40 166-205 (302)
177 2bov_A RAla, RAS-related prote 98.3 1.5E-05 5.1E-10 64.8 13.8 23 3-25 15-37 (206)
178 1z2a_A RAS-related protein RAB 98.3 7.3E-07 2.5E-11 70.0 5.5 23 3-25 6-28 (168)
179 1wms_A RAB-9, RAB9, RAS-relate 98.3 5.3E-06 1.8E-10 65.7 10.5 23 3-25 8-30 (177)
180 3lxw_A GTPase IMAP family memb 98.3 4.5E-06 1.5E-10 71.5 10.6 23 3-25 22-44 (247)
181 3a1s_A Iron(II) transport prot 98.3 2.4E-06 8.1E-11 73.9 8.8 23 3-25 6-28 (258)
182 3lnc_A Guanylate kinase, GMP k 98.3 2.3E-07 8E-12 78.3 2.3 26 3-28 28-54 (231)
183 2rcn_A Probable GTPase ENGC; Y 98.3 4.5E-07 1.5E-11 82.5 4.2 35 4-38 217-253 (358)
184 2fn4_A P23, RAS-related protei 98.3 6.7E-06 2.3E-10 65.1 10.6 23 3-25 10-32 (181)
185 1kgd_A CASK, peripheral plasma 98.3 3E-07 1E-11 75.0 2.6 38 3-40 6-44 (180)
186 3con_A GTPase NRAS; structural 98.3 2.2E-06 7.6E-11 69.1 7.8 23 3-25 22-44 (190)
187 2ged_A SR-beta, signal recogni 98.3 3.9E-06 1.3E-10 67.8 9.1 24 3-26 49-72 (193)
188 4eun_A Thermoresistant glucoki 98.3 4E-07 1.4E-11 75.2 3.2 33 3-39 30-62 (200)
189 2qtf_A Protein HFLX, GTP-bindi 98.2 1.1E-05 3.6E-10 73.4 12.7 23 4-26 181-203 (364)
190 2j41_A Guanylate kinase; GMP, 98.2 5.4E-07 1.8E-11 74.0 3.7 29 3-31 7-35 (207)
191 3t1o_A Gliding protein MGLA; G 98.2 3.2E-05 1.1E-09 62.0 14.2 25 3-27 15-39 (198)
192 3pih_A Uvrabc system protein A 98.2 2.9E-06 1E-10 85.6 9.6 113 22-137 388-523 (916)
193 2erx_A GTP-binding protein DI- 98.2 3.6E-05 1.2E-09 60.2 14.2 22 3-24 4-25 (172)
194 2v3c_C SRP54, signal recogniti 98.2 2.3E-06 8E-11 79.6 8.1 152 3-180 100-253 (432)
195 3clv_A RAB5 protein, putative; 98.2 3.9E-06 1.3E-10 67.6 8.4 24 3-26 8-31 (208)
196 2cxx_A Probable GTP-binding pr 98.2 3.9E-05 1.3E-09 61.3 14.4 23 3-25 2-24 (190)
197 1nrj_B SR-beta, signal recogni 98.2 5.9E-06 2E-10 68.2 9.4 24 3-26 13-36 (218)
198 3t5d_A Septin-7; GTP-binding p 98.2 1.6E-05 5.5E-10 68.9 12.5 23 3-25 9-31 (274)
199 1t9h_A YLOQ, probable GTPase E 98.2 2.4E-07 8.3E-12 82.6 0.7 32 4-35 175-206 (307)
200 4e22_A Cytidylate kinase; P-lo 98.2 1.5E-07 5.1E-12 81.1 -0.8 32 3-34 28-62 (252)
201 2qu8_A Putative nucleolar GTP- 98.2 1.9E-05 6.5E-10 66.0 12.2 22 3-24 30-51 (228)
202 1kag_A SKI, shikimate kinase I 98.2 6.3E-07 2.1E-11 71.7 2.7 28 1-28 3-30 (173)
203 1jjv_A Dephospho-COA kinase; P 98.2 1E-06 3.5E-11 72.8 3.8 24 1-24 1-24 (206)
204 3kkq_A RAS-related protein M-R 98.2 1.5E-05 5.2E-10 63.6 10.5 23 3-25 19-41 (183)
205 2vp4_A Deoxynucleoside kinase; 98.2 9E-07 3.1E-11 74.9 3.4 33 3-39 21-53 (230)
206 2r6a_A DNAB helicase, replicat 98.1 2.7E-06 9.1E-11 79.3 6.8 131 4-137 205-361 (454)
207 2e87_A Hypothetical protein PH 98.1 4.8E-06 1.7E-10 75.1 8.2 24 3-26 168-191 (357)
208 4dsu_A GTPase KRAS, isoform 2B 98.1 2.1E-05 7.2E-10 62.8 11.2 23 3-25 5-27 (189)
209 2z4s_A Chromosomal replication 98.1 6.2E-06 2.1E-10 76.7 9.0 98 4-136 132-233 (440)
210 3uie_A Adenylyl-sulfate kinase 98.1 6E-07 2.1E-11 74.2 1.7 36 3-39 26-63 (200)
211 3kta_A Chromosome segregation 98.1 1.1E-06 3.8E-11 71.0 3.2 28 4-31 28-55 (182)
212 1l8q_A Chromosomal replication 98.1 9.9E-06 3.4E-10 71.6 9.4 98 4-137 39-138 (324)
213 3tau_A Guanylate kinase, GMP k 98.1 1.4E-06 4.7E-11 72.6 3.6 38 3-40 9-47 (208)
214 2y8e_A RAB-protein 6, GH09086P 98.1 5.2E-06 1.8E-10 65.7 6.8 23 3-25 15-37 (179)
215 3sjy_A Translation initiation 98.1 1.8E-05 6.1E-10 72.6 11.3 112 99-248 75-190 (403)
216 4gzl_A RAS-related C3 botulinu 98.1 4E-05 1.4E-09 62.9 12.4 71 164-248 133-203 (204)
217 1wf3_A GTP-binding protein; GT 98.1 4.3E-05 1.5E-09 67.5 13.2 22 4-25 9-30 (301)
218 2g6b_A RAS-related protein RAB 98.1 3.1E-06 1E-10 67.3 5.3 23 3-25 11-33 (180)
219 2jeo_A Uridine-cytidine kinase 98.1 1.6E-06 5.5E-11 74.0 3.5 25 2-26 25-49 (245)
220 1z0j_A RAB-22, RAS-related pro 98.1 1.1E-05 3.7E-10 63.2 8.1 23 3-25 7-29 (170)
221 2w58_A DNAI, primosome compone 98.1 5E-06 1.7E-10 68.2 6.2 33 3-35 55-87 (202)
222 2gf0_A GTP-binding protein DI- 98.1 5.5E-05 1.9E-09 61.0 12.3 22 3-24 9-30 (199)
223 3r7w_A Gtpase1, GTP-binding pr 98.1 2E-05 6.8E-10 69.6 10.4 24 3-26 4-27 (307)
224 1m2o_B GTP-binding protein SAR 98.1 1.5E-05 5.1E-10 64.8 8.9 67 164-247 123-189 (190)
225 1knq_A Gluconate kinase; ALFA/ 98.1 1.7E-06 5.9E-11 69.4 3.1 33 3-39 9-41 (175)
226 3t5g_A GTP-binding protein RHE 98.1 1.6E-05 5.3E-10 63.4 8.7 22 3-24 7-28 (181)
227 1vg8_A RAS-related protein RAB 98.1 2.9E-06 9.9E-11 69.2 4.5 23 3-25 9-31 (207)
228 1z0f_A RAB14, member RAS oncog 98.1 2E-05 6.7E-10 62.3 9.2 23 3-25 16-38 (179)
229 2j37_W Signal recognition part 98.1 5.8E-05 2E-09 71.5 14.0 151 3-180 102-255 (504)
230 1z08_A RAS-related protein RAB 98.1 2.4E-05 8.1E-10 61.3 9.6 23 3-25 7-29 (170)
231 1ek0_A Protein (GTP-binding pr 98.1 5.4E-05 1.9E-09 59.0 11.7 23 3-25 4-26 (170)
232 3bos_A Putative DNA replicatio 98.1 7.2E-06 2.5E-10 68.1 6.9 33 4-36 54-86 (242)
233 2oil_A CATX-8, RAS-related pro 98.1 1.4E-05 4.8E-10 64.5 8.5 23 3-25 26-48 (193)
234 3q72_A GTP-binding protein RAD 98.1 2.5E-05 8.7E-10 61.0 9.7 23 3-25 3-25 (166)
235 3q85_A GTP-binding protein REM 98.0 1.5E-05 5E-10 62.6 8.3 23 3-25 3-25 (169)
236 2fg5_A RAB-22B, RAS-related pr 98.0 3.2E-05 1.1E-09 62.7 10.5 57 165-248 128-184 (192)
237 1mh1_A RAC1; GTP-binding, GTPa 98.0 3.9E-05 1.3E-09 61.0 10.9 70 165-248 109-178 (186)
238 1wb1_A Translation elongation 98.0 4E-05 1.4E-09 72.1 12.5 113 98-248 72-187 (482)
239 2f9l_A RAB11B, member RAS onco 98.0 1.9E-06 6.4E-11 70.6 3.0 24 3-26 6-29 (199)
240 3bwd_D RAC-like GTP-binding pr 98.0 2.9E-05 9.9E-10 61.6 9.8 68 165-248 112-179 (182)
241 1cke_A CK, MSSA, protein (cyti 98.0 6.2E-07 2.1E-11 74.9 -0.1 34 2-35 5-41 (227)
242 2x8a_A Nuclear valosin-contain 98.0 3.1E-06 1E-10 73.9 4.2 34 4-39 46-79 (274)
243 3tkl_A RAS-related protein RAB 98.0 3.5E-05 1.2E-09 62.0 10.2 23 3-25 17-39 (196)
244 3ihw_A Centg3; RAS, centaurin, 98.0 4.6E-05 1.6E-09 61.6 10.9 61 164-248 118-178 (184)
245 2fv8_A H6, RHO-related GTP-bin 98.0 3.8E-05 1.3E-09 63.0 10.3 69 165-247 129-197 (207)
246 1lnz_A SPO0B-associated GTP-bi 98.0 6.2E-06 2.1E-10 74.4 6.0 79 99-180 206-289 (342)
247 1m7b_A RND3/RHOE small GTP-bin 98.0 4.4E-05 1.5E-09 61.3 10.5 70 164-247 110-180 (184)
248 3llu_A RAS-related GTP-binding 98.0 7.4E-05 2.5E-09 60.7 11.9 25 2-26 20-44 (196)
249 2atx_A Small GTP binding prote 98.0 3.5E-05 1.2E-09 62.2 9.7 69 165-247 122-190 (194)
250 2efe_B Small GTP-binding prote 98.0 2.2E-05 7.7E-10 62.2 8.0 23 3-25 13-35 (181)
251 2hjg_A GTP-binding protein ENG 98.0 3E-05 1E-09 71.8 9.8 23 2-24 3-25 (436)
252 2gco_A H9, RHO-related GTP-bin 98.0 6.1E-05 2.1E-09 61.5 10.6 69 165-247 129-197 (201)
253 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 5.4E-06 1.9E-10 76.2 4.6 36 2-37 20-67 (392)
254 3oes_A GTPase rhebl1; small GT 97.9 5.9E-05 2E-09 61.5 10.4 23 3-25 25-47 (201)
255 2j1l_A RHO-related GTP-binding 97.9 0.00023 8E-09 58.7 14.1 71 164-248 137-207 (214)
256 2x2e_A Dynamin-1; nitration, h 97.9 0.00014 4.7E-09 65.4 13.6 24 3-26 32-55 (353)
257 1gwn_A RHO-related GTP-binding 97.9 6.9E-05 2.4E-09 61.8 10.7 70 164-247 131-201 (205)
258 2f7s_A C25KG, RAS-related prot 97.9 3.7E-05 1.3E-09 63.3 9.1 24 3-26 26-49 (217)
259 1jwy_B Dynamin A GTPase domain 97.9 0.0001 3.4E-09 64.5 12.3 24 3-26 25-48 (315)
260 2hup_A RAS-related protein RAB 97.9 7.8E-05 2.7E-09 61.0 10.9 23 3-25 30-52 (201)
261 4fcw_A Chaperone protein CLPB; 97.9 2.3E-05 7.8E-10 68.3 7.6 98 3-125 48-145 (311)
262 2atv_A RERG, RAS-like estrogen 97.9 7.9E-05 2.7E-09 60.4 10.3 23 3-25 29-51 (196)
263 3k1j_A LON protease, ATP-depen 97.9 1.2E-05 4.2E-10 77.5 6.3 34 4-37 62-96 (604)
264 3c5c_A RAS-like protein 12; GD 97.9 0.00018 6E-09 58.1 12.3 23 3-25 22-44 (187)
265 3def_A T7I23.11 protein; chlor 97.9 9.3E-06 3.2E-10 69.9 4.8 22 3-24 37-58 (262)
266 2ius_A DNA translocase FTSK; n 97.9 2.1E-05 7.1E-10 74.7 7.6 38 5-42 170-209 (512)
267 2vf7_A UVRA2, excinuclease ABC 97.9 5E-05 1.7E-09 76.0 10.7 70 62-136 362-437 (842)
268 1zd9_A ADP-ribosylation factor 97.9 0.00023 7.8E-09 57.3 12.9 23 3-25 23-45 (188)
269 2c78_A Elongation factor TU-A; 97.9 0.00037 1.3E-08 63.7 15.8 23 3-25 12-34 (405)
270 3reg_A RHO-like small GTPase; 97.9 5.6E-05 1.9E-09 61.1 9.2 61 164-248 126-186 (194)
271 2aka_B Dynamin-1; fusion prote 97.9 0.00023 8E-09 61.5 13.8 24 3-26 27-50 (299)
272 3dz8_A RAS-related protein RAB 97.9 4.1E-05 1.4E-09 61.8 8.3 23 3-25 24-46 (191)
273 2il1_A RAB12; G-protein, GDP, 97.9 3.4E-05 1.2E-09 62.6 7.8 22 3-24 27-48 (192)
274 2qt1_A Nicotinamide riboside k 97.9 1.1E-05 3.8E-10 66.5 4.9 35 2-40 21-55 (207)
275 2r6f_A Excinuclease ABC subuni 97.9 6E-05 2E-09 76.2 10.9 70 62-136 487-562 (972)
276 1np6_A Molybdopterin-guanine d 97.9 5.7E-06 2E-10 67.7 2.9 40 1-40 5-44 (174)
277 3gee_A MNME, tRNA modification 97.9 2E-05 6.9E-10 74.1 7.0 23 3-25 234-256 (476)
278 2p5s_A RAS and EF-hand domain 97.9 0.00016 5.4E-09 58.8 11.6 23 3-25 29-51 (199)
279 3ney_A 55 kDa erythrocyte memb 97.9 5.9E-06 2E-10 69.0 2.9 24 4-27 21-44 (197)
280 1ixz_A ATP-dependent metallopr 97.8 7.9E-06 2.7E-10 69.6 3.5 33 4-38 51-83 (254)
281 2ygr_A Uvrabc system protein A 97.8 5.6E-05 1.9E-09 76.6 10.1 70 62-136 504-579 (993)
282 3cr8_A Sulfate adenylyltranfer 97.8 4.7E-06 1.6E-10 79.8 2.2 35 3-37 370-406 (552)
283 1ly1_A Polynucleotide kinase; 97.8 1E-05 3.4E-10 64.7 3.7 24 1-24 1-24 (181)
284 2yc2_C IFT27, small RAB-relate 97.8 3.9E-05 1.3E-09 62.2 7.3 23 3-25 21-43 (208)
285 2yvu_A Probable adenylyl-sulfa 97.8 6.5E-06 2.2E-10 66.8 2.5 35 3-37 14-48 (186)
286 2if2_A Dephospho-COA kinase; a 97.8 8.5E-06 2.9E-10 66.9 3.2 22 3-24 2-23 (204)
287 2ce7_A Cell division protein F 97.8 8.1E-05 2.8E-09 70.0 10.2 24 3-26 50-73 (476)
288 1u94_A RECA protein, recombina 97.8 5.3E-05 1.8E-09 68.7 8.7 89 4-110 65-153 (356)
289 2elf_A Protein translation elo 97.8 6.7E-05 2.3E-09 68.3 9.1 20 4-23 23-42 (370)
290 2qby_A CDC6 homolog 1, cell di 97.8 8.9E-06 3E-10 72.4 3.2 26 4-29 47-72 (386)
291 3j2k_7 ERF3, eukaryotic polype 97.8 0.00022 7.6E-09 66.2 12.6 111 98-242 94-217 (439)
292 1iy2_A ATP-dependent metallopr 97.8 1.1E-05 3.9E-10 69.8 3.5 33 4-38 75-107 (278)
293 2xxa_A Signal recognition part 97.8 0.00028 9.5E-09 65.6 13.0 40 3-42 101-141 (433)
294 2j0v_A RAC-like GTP-binding pr 97.8 0.00011 3.8E-09 60.1 9.1 65 165-247 113-177 (212)
295 1v5w_A DMC1, meiotic recombina 97.8 0.00013 4.4E-09 65.5 10.2 23 3-25 123-145 (343)
296 3t61_A Gluconokinase; PSI-biol 97.7 1.1E-05 3.9E-10 66.2 2.8 25 2-26 18-42 (202)
297 3kta_B Chromosome segregation 97.7 4.4E-05 1.5E-09 62.3 6.3 50 85-136 71-123 (173)
298 2dy1_A Elongation factor G; tr 97.7 0.00049 1.7E-08 67.2 14.8 41 208-248 232-272 (665)
299 2r8r_A Sensor protein; KDPD, P 97.7 4.3E-05 1.5E-09 65.1 6.4 40 2-41 6-45 (228)
300 1in4_A RUVB, holliday junction 97.7 2.6E-06 9E-11 76.1 -1.5 33 4-36 53-89 (334)
301 2hjg_A GTP-binding protein ENG 97.7 7.9E-05 2.7E-09 68.9 8.2 23 3-25 176-198 (436)
302 3n70_A Transport activator; si 97.7 0.00012 4.1E-09 57.2 8.0 87 5-137 27-113 (145)
303 2pez_A Bifunctional 3'-phospho 97.7 1.3E-05 4.6E-10 64.5 2.5 26 3-28 6-31 (179)
304 2z43_A DNA repair and recombin 97.7 0.0001 3.5E-09 65.5 8.3 23 4-26 109-131 (324)
305 4dcu_A GTP-binding protein ENG 97.7 0.00016 5.6E-09 67.2 10.0 23 2-24 23-45 (456)
306 1xp8_A RECA protein, recombina 97.7 0.0002 6.9E-09 65.1 10.1 116 4-137 76-208 (366)
307 1m7g_A Adenylylsulfate kinase; 97.7 1E-05 3.5E-10 67.2 1.3 34 3-36 26-61 (211)
308 1w1w_A Structural maintenance 97.7 1.8E-05 6.3E-10 73.0 3.0 49 87-136 342-393 (430)
309 2v1u_A Cell division control p 97.6 5.7E-05 1.9E-09 67.2 6.0 106 4-126 46-159 (387)
310 3h4m_A Proteasome-activating n 97.6 0.00031 1.1E-08 60.4 10.5 24 3-26 52-75 (285)
311 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 2.7E-05 9.1E-10 61.8 3.3 21 4-24 25-45 (149)
312 1odf_A YGR205W, hypothetical 3 97.6 1.6E-05 5.4E-10 70.1 2.1 39 2-40 31-72 (290)
313 1d2e_A Elongation factor TU (E 97.6 9.3E-05 3.2E-09 67.7 7.3 23 3-25 4-26 (397)
314 2qgz_A Helicase loader, putati 97.6 8.3E-05 2.8E-09 65.8 6.7 33 3-35 153-186 (308)
315 3th5_A RAS-related C3 botulinu 96.8 7.8E-06 2.7E-10 66.9 0.0 69 165-247 134-202 (204)
316 3kb2_A SPBC2 prophage-derived 97.6 2.8E-05 9.6E-10 61.5 3.3 23 4-26 3-25 (173)
317 1xjc_A MOBB protein homolog; s 97.6 2.3E-05 8E-10 63.8 2.8 39 3-41 5-43 (169)
318 1qhx_A CPT, protein (chloramph 97.6 3.4E-05 1.2E-09 61.7 3.5 27 1-27 2-28 (178)
319 4eaq_A DTMP kinase, thymidylat 97.6 3.7E-05 1.2E-09 65.2 3.7 33 3-36 27-59 (229)
320 3lw7_A Adenylate kinase relate 97.6 3.6E-05 1.2E-09 60.6 3.1 20 3-22 2-21 (179)
321 2j69_A Bacterial dynamin-like 97.6 0.00047 1.6E-08 67.7 11.6 25 2-26 69-93 (695)
322 2o5v_A DNA replication and rep 97.6 5.3E-05 1.8E-09 68.8 4.5 37 87-126 274-320 (359)
323 1kk1_A EIF2gamma; initiation o 97.5 0.00037 1.3E-08 63.8 10.0 112 99-248 83-198 (410)
324 4ad8_A DNA repair protein RECN 97.5 0.0001 3.4E-09 69.7 6.3 49 85-137 404-455 (517)
325 4dcu_A GTP-binding protein ENG 97.5 0.00029 1E-08 65.4 9.4 23 3-25 196-218 (456)
326 1g7s_A Translation initiation 97.5 0.00095 3.2E-08 64.4 13.2 22 3-24 6-27 (594)
327 2wji_A Ferrous iron transport 97.5 5.5E-05 1.9E-09 59.8 3.8 24 3-26 4-27 (165)
328 3vaa_A Shikimate kinase, SK; s 97.5 4.6E-05 1.6E-09 62.6 3.3 23 4-26 27-49 (199)
329 1qf9_A UMP/CMP kinase, protein 97.5 5.6E-05 1.9E-09 60.8 3.6 26 1-26 5-30 (194)
330 3cm0_A Adenylate kinase; ATP-b 97.5 5.5E-05 1.9E-09 60.9 3.4 25 2-26 4-28 (186)
331 3b9p_A CG5977-PA, isoform A; A 97.5 0.00024 8.1E-09 61.6 7.8 24 3-26 55-78 (297)
332 3co5_A Putative two-component 97.5 0.0002 6.8E-09 55.9 6.5 39 98-137 75-113 (143)
333 2wkq_A NPH1-1, RAS-related C3 97.5 0.00017 5.8E-09 63.0 6.5 69 165-247 259-327 (332)
334 1vht_A Dephospho-COA kinase; s 97.5 7E-05 2.4E-09 62.2 3.7 23 2-24 4-26 (218)
335 2qor_A Guanylate kinase; phosp 97.5 4.4E-05 1.5E-09 63.0 2.4 25 3-27 13-37 (204)
336 3ake_A Cytidylate kinase; CMP 97.5 6.3E-05 2.1E-09 61.5 3.4 26 1-26 1-26 (208)
337 3p26_A Elongation factor 1 alp 97.5 0.00031 1.1E-08 65.8 8.6 23 3-25 34-56 (483)
338 1via_A Shikimate kinase; struc 97.5 5E-05 1.7E-09 60.9 2.6 23 4-26 6-28 (175)
339 1gtv_A TMK, thymidylate kinase 97.4 1.7E-05 5.8E-10 65.3 -0.2 33 4-36 2-34 (214)
340 1tev_A UMP-CMP kinase; ploop, 97.4 7.6E-05 2.6E-09 60.1 3.6 25 2-26 3-27 (196)
341 1e6c_A Shikimate kinase; phosp 97.4 5.8E-05 2E-09 60.0 2.9 26 1-26 1-26 (173)
342 1mky_A Probable GTP-binding pr 97.4 9E-05 3.1E-09 68.6 4.6 25 3-27 181-205 (439)
343 1jny_A EF-1-alpha, elongation 97.4 0.00046 1.6E-08 63.8 9.4 22 3-24 7-28 (435)
344 2rhm_A Putative kinase; P-loop 97.4 8.3E-05 2.8E-09 60.0 3.7 25 2-26 5-29 (193)
345 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.0009 3.1E-08 56.5 10.3 23 4-26 41-63 (262)
346 2p5t_B PEZT; postsegregational 97.4 6.2E-05 2.1E-09 64.4 2.9 34 2-37 32-65 (253)
347 1s0u_A EIF-2-gamma, translatio 97.4 0.00054 1.9E-08 62.7 9.5 23 3-25 9-31 (408)
348 1uf9_A TT1252 protein; P-loop, 97.4 9.7E-05 3.3E-09 60.1 4.0 24 2-25 8-31 (203)
349 2iyv_A Shikimate kinase, SK; t 97.4 6E-05 2.1E-09 60.7 2.5 26 1-26 1-26 (184)
350 3zvr_A Dynamin-1; hydrolase, D 97.4 0.0015 5.1E-08 64.7 12.9 77 98-180 149-232 (772)
351 1sxj_D Activator 1 41 kDa subu 97.4 0.00013 4.4E-09 64.4 4.8 23 5-27 61-83 (353)
352 2bwj_A Adenylate kinase 5; pho 97.4 6.7E-05 2.3E-09 60.9 2.7 25 2-26 12-36 (199)
353 2zej_A Dardarin, leucine-rich 97.4 8.1E-05 2.8E-09 59.9 3.1 24 3-26 3-26 (184)
354 3qq5_A Small GTP-binding prote 97.4 3.4E-05 1.2E-09 71.5 0.9 23 2-24 34-56 (423)
355 3o47_A ADP-ribosylation factor 97.4 0.00073 2.5E-08 60.1 9.4 22 3-24 166-187 (329)
356 3qks_A DNA double-strand break 97.4 9.5E-05 3.3E-09 61.4 3.3 22 4-25 25-46 (203)
357 1kht_A Adenylate kinase; phosp 97.3 0.00011 3.7E-09 59.0 3.4 25 3-27 4-28 (192)
358 2plr_A DTMP kinase, probable t 97.3 0.00012 4.3E-09 59.7 3.8 30 3-33 5-34 (213)
359 3trf_A Shikimate kinase, SK; a 97.3 0.00011 3.7E-09 59.2 3.3 25 2-26 5-29 (185)
360 2jaq_A Deoxyguanosine kinase; 97.3 0.00011 3.7E-09 59.7 3.3 24 4-27 2-25 (205)
361 3r20_A Cytidylate kinase; stru 97.3 0.00011 3.7E-09 62.9 3.3 25 2-26 9-33 (233)
362 3izq_1 HBS1P, elongation facto 97.3 0.0011 3.6E-08 64.2 10.6 23 3-25 168-190 (611)
363 1nks_A Adenylate kinase; therm 97.3 0.00013 4.3E-09 58.7 3.5 26 3-28 2-27 (194)
364 1svm_A Large T antigen; AAA+ f 97.3 0.0001 3.5E-09 67.3 3.2 29 4-35 171-199 (377)
365 2ze6_A Isopentenyl transferase 97.3 0.00012 4.1E-09 62.8 3.3 24 3-26 2-25 (253)
366 1ltq_A Polynucleotide kinase; 97.3 0.00014 4.9E-09 63.2 3.8 24 1-24 1-24 (301)
367 3auy_A DNA double-strand break 97.3 0.00037 1.3E-08 63.0 6.6 45 88-136 296-342 (371)
368 1uj2_A Uridine-cytidine kinase 97.3 0.00016 5.3E-09 61.7 3.9 26 2-27 22-47 (252)
369 3geh_A MNME, tRNA modification 97.3 0.00043 1.5E-08 64.8 7.2 22 3-24 225-246 (462)
370 1f60_A Elongation factor EEF1A 97.3 0.00033 1.1E-08 65.4 6.2 23 3-25 8-30 (458)
371 1zun_B Sulfate adenylate trans 97.3 0.00023 7.8E-09 65.8 5.1 23 3-25 25-47 (434)
372 3d3q_A TRNA delta(2)-isopenten 97.3 0.0002 6.9E-09 64.5 4.5 27 1-27 6-32 (340)
373 2ohf_A Protein OLA1, GTP-bindi 97.3 0.00014 4.6E-09 67.0 3.4 23 3-25 23-45 (396)
374 2cdn_A Adenylate kinase; phosp 97.3 0.00015 5.3E-09 59.3 3.4 25 2-26 20-44 (201)
375 1ypw_A Transitional endoplasmi 97.2 0.00047 1.6E-08 68.8 7.4 25 4-28 240-264 (806)
376 3kjh_A CO dehydrogenase/acetyl 97.2 0.00052 1.8E-08 57.3 6.6 39 1-41 1-39 (254)
377 2v54_A DTMP kinase, thymidylat 97.2 0.00017 5.9E-09 58.7 3.5 24 3-26 5-28 (204)
378 4a1f_A DNAB helicase, replicat 97.2 0.00042 1.4E-08 62.4 6.3 36 4-39 48-83 (338)
379 1mky_A Probable GTP-binding pr 97.2 0.0016 5.5E-08 60.1 10.4 22 4-25 3-24 (439)
380 4ag6_A VIRB4 ATPase, type IV s 97.2 0.00014 4.9E-09 66.0 3.1 34 4-37 37-70 (392)
381 2c95_A Adenylate kinase 1; tra 97.2 0.00018 6E-09 58.2 3.3 24 3-26 10-33 (196)
382 1gvn_B Zeta; postsegregational 97.2 0.00015 5.3E-09 63.4 3.2 25 2-26 33-57 (287)
383 2z0h_A DTMP kinase, thymidylat 97.2 0.00017 5.8E-09 58.3 3.2 25 4-28 2-26 (197)
384 1q3t_A Cytidylate kinase; nucl 97.2 0.00017 5.9E-09 60.8 3.3 23 3-25 17-39 (236)
385 1jal_A YCHF protein; nucleotid 97.2 0.00027 9.3E-09 64.2 4.7 25 1-25 1-25 (363)
386 2wwf_A Thymidilate kinase, put 97.2 0.00019 6.5E-09 58.8 3.4 26 2-27 10-35 (212)
387 3nwj_A ATSK2; P loop, shikimat 97.2 0.00015 5E-09 62.6 2.8 24 3-26 49-72 (250)
388 1y63_A LMAJ004144AAA protein; 97.2 0.00019 6.4E-09 58.2 3.3 23 3-25 11-33 (184)
389 3m6a_A ATP-dependent protease 97.2 8.7E-05 3E-09 70.8 1.4 34 4-37 110-143 (543)
390 1ex7_A Guanylate kinase; subst 97.2 0.00019 6.6E-09 59.2 3.1 22 5-26 4-25 (186)
391 1ukz_A Uridylate kinase; trans 97.2 0.00024 8.1E-09 58.1 3.6 24 3-26 16-39 (203)
392 2chg_A Replication factor C sm 97.2 0.00072 2.5E-08 54.7 6.5 22 5-26 41-62 (226)
393 3sr0_A Adenylate kinase; phosp 97.2 0.0002 6.9E-09 59.8 3.2 23 4-26 2-24 (206)
394 3fb4_A Adenylate kinase; psych 97.1 0.00022 7.4E-09 58.9 3.2 23 4-26 2-24 (216)
395 2pbr_A DTMP kinase, thymidylat 97.1 0.00024 8.1E-09 57.2 3.2 24 4-27 2-25 (195)
396 1sxj_C Activator 1 40 kDa subu 97.1 8.7E-05 3E-09 66.0 0.6 35 5-39 49-83 (340)
397 2wsm_A Hydrogenase expression/ 97.1 0.00033 1.1E-08 57.8 4.0 37 3-40 31-67 (221)
398 3umf_A Adenylate kinase; rossm 97.1 0.00025 8.6E-09 59.9 3.3 24 3-26 30-53 (217)
399 1lv7_A FTSH; alpha/beta domain 97.1 0.00025 8.4E-09 60.3 3.3 24 4-27 47-70 (257)
400 2xau_A PRE-mRNA-splicing facto 97.1 0.00095 3.2E-08 66.3 7.9 24 4-27 111-134 (773)
401 3dl0_A Adenylate kinase; phosp 97.1 0.00025 8.4E-09 58.6 3.2 23 4-26 2-24 (216)
402 2vli_A Antibiotic resistance p 97.1 0.00015 5.3E-09 58.0 1.8 24 3-26 6-29 (183)
403 2grj_A Dephospho-COA kinase; T 97.1 0.00029 9.9E-09 58.2 3.4 23 3-25 13-35 (192)
404 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.0051 1.7E-07 54.4 11.8 24 3-26 46-69 (322)
405 2i1q_A DNA repair and recombin 97.1 0.0016 5.5E-08 57.4 8.5 22 3-24 99-120 (322)
406 1zak_A Adenylate kinase; ATP:A 97.1 0.00024 8.1E-09 59.1 2.8 24 3-26 6-29 (222)
407 3io5_A Recombination and repai 97.1 0.0022 7.5E-08 57.4 9.2 119 4-139 30-171 (333)
408 3tlx_A Adenylate kinase 2; str 97.1 0.00031 1.1E-08 59.7 3.6 25 2-26 29-53 (243)
409 3avx_A Elongation factor TS, e 97.1 0.0019 6.4E-08 66.7 9.8 23 3-25 297-319 (1289)
410 3iij_A Coilin-interacting nucl 97.1 0.00026 8.7E-09 56.8 2.9 23 4-26 13-35 (180)
411 1zd8_A GTP:AMP phosphotransfer 97.1 0.00029 1E-08 58.9 3.3 24 3-26 8-31 (227)
412 3dpu_A RAB family protein; roc 97.1 0.0027 9.1E-08 60.1 10.3 23 3-25 42-64 (535)
413 1aky_A Adenylate kinase; ATP:A 97.1 0.0003 1E-08 58.4 3.3 24 3-26 5-28 (220)
414 2b8t_A Thymidine kinase; deoxy 97.1 0.002 6.9E-08 54.5 8.5 34 3-36 13-46 (223)
415 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00022 7.7E-09 61.2 2.5 25 3-27 5-29 (260)
416 1nn5_A Similar to deoxythymidy 97.0 0.00031 1.1E-08 57.6 3.2 25 3-27 10-34 (215)
417 1w1w_A Structural maintenance 97.0 0.001 3.6E-08 61.1 7.1 26 4-29 28-53 (430)
418 2f6r_A COA synthase, bifunctio 97.0 0.00034 1.2E-08 60.9 3.6 23 2-24 75-97 (281)
419 2dhr_A FTSH; AAA+ protein, hex 97.0 0.00041 1.4E-08 65.6 4.3 35 3-39 65-99 (499)
420 2h5e_A Peptide chain release f 97.0 0.00077 2.6E-08 64.1 6.2 23 3-25 14-36 (529)
421 2o5v_A DNA replication and rep 97.0 0.00067 2.3E-08 61.5 5.4 21 4-24 28-48 (359)
422 2pt5_A Shikimate kinase, SK; a 97.0 0.00038 1.3E-08 54.9 3.3 23 4-26 2-24 (168)
423 1f6b_A SAR1; gtpases, N-termin 97.0 0.0005 1.7E-08 56.0 3.9 22 3-24 26-47 (198)
424 1zuh_A Shikimate kinase; alpha 97.0 0.00042 1.4E-08 54.9 3.3 23 4-26 9-31 (168)
425 3cmu_A Protein RECA, recombina 97.0 0.0023 7.9E-08 69.2 9.8 119 3-139 1428-1563(2050)
426 2xb4_A Adenylate kinase; ATP-b 96.9 0.00043 1.5E-08 57.9 3.3 23 4-26 2-24 (223)
427 1dar_A EF-G, elongation factor 96.9 0.0063 2.2E-07 59.6 11.9 22 3-24 13-34 (691)
428 2nzj_A GTP-binding protein REM 96.9 0.0005 1.7E-08 53.8 3.4 23 3-25 5-27 (175)
429 1a7j_A Phosphoribulokinase; tr 96.9 0.00012 4.1E-09 64.3 -0.3 38 2-39 5-42 (290)
430 2qag_A Septin-2, protein NEDD5 96.9 0.00036 1.2E-08 63.1 2.7 29 3-31 38-66 (361)
431 3crm_A TRNA delta(2)-isopenten 96.9 0.00054 1.8E-08 61.3 3.7 26 1-26 4-29 (323)
432 1ojl_A Transcriptional regulat 96.9 0.0036 1.2E-07 55.0 8.9 29 4-32 27-55 (304)
433 1e4v_A Adenylate kinase; trans 96.9 0.00047 1.6E-08 57.1 3.0 22 5-26 3-24 (214)
434 3cb4_D GTP-binding protein LEP 96.9 0.0027 9.3E-08 61.3 8.6 23 3-25 5-27 (599)
435 1g16_A RAS-related protein SEC 96.9 0.00056 1.9E-08 53.2 3.1 23 3-25 4-26 (170)
436 1fzq_A ADP-ribosylation factor 96.8 0.00055 1.9E-08 54.8 3.0 23 3-25 17-39 (181)
437 2lkc_A Translation initiation 96.8 0.00066 2.2E-08 53.4 3.4 23 3-25 9-31 (178)
438 2r2a_A Uncharacterized protein 96.8 0.00076 2.6E-08 56.0 3.9 39 1-39 4-48 (199)
439 3be4_A Adenylate kinase; malar 96.8 0.00058 2E-08 56.7 3.2 24 3-26 6-29 (217)
440 3tw8_B RAS-related protein RAB 96.8 0.0006 2E-08 53.6 3.0 22 3-24 10-31 (181)
441 1jr3_A DNA polymerase III subu 96.8 0.0052 1.8E-07 54.4 9.5 26 3-28 39-64 (373)
442 4dzz_A Plasmid partitioning pr 96.8 0.0025 8.5E-08 51.6 6.9 41 1-41 1-41 (206)
443 1upt_A ARL1, ADP-ribosylation 96.8 0.00075 2.6E-08 52.6 3.5 22 3-24 8-29 (171)
444 1r2q_A RAS-related protein RAB 96.8 0.00069 2.3E-08 52.6 3.2 22 3-24 7-28 (170)
445 1moz_A ARL1, ADP-ribosylation 96.8 0.00043 1.5E-08 54.8 2.0 22 3-24 19-40 (183)
446 2hf9_A Probable hydrogenase ni 96.8 0.00076 2.6E-08 55.7 3.6 37 3-40 39-75 (226)
447 2h92_A Cytidylate kinase; ross 96.8 0.00058 2E-08 56.4 2.7 25 2-26 3-27 (219)
448 2zts_A Putative uncharacterize 96.8 0.0012 4.1E-08 55.0 4.7 36 4-39 32-68 (251)
449 2hxs_A RAB-26, RAS-related pro 96.8 0.00083 2.8E-08 52.8 3.5 22 3-24 7-28 (178)
450 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.0026 9E-08 56.9 7.0 22 4-25 125-146 (331)
451 3auy_A DNA double-strand break 96.7 0.00071 2.4E-08 61.2 3.2 20 4-23 27-46 (371)
452 3d8b_A Fidgetin-like protein 1 96.7 0.004 1.4E-07 55.8 8.1 24 3-26 118-141 (357)
453 1ak2_A Adenylate kinase isoenz 96.7 0.00085 2.9E-08 56.3 3.4 24 3-26 17-40 (233)
454 3bc1_A RAS-related protein RAB 96.7 0.00085 2.9E-08 53.2 3.2 23 3-25 12-34 (195)
455 3cf0_A Transitional endoplasmi 96.7 0.0008 2.7E-08 58.9 3.2 24 3-26 50-73 (301)
456 3bh0_A DNAB-like replicative h 96.7 0.0084 2.9E-07 52.9 9.9 34 4-37 70-103 (315)
457 2ywe_A GTP-binding protein LEP 96.7 0.005 1.7E-07 59.4 9.0 67 100-180 74-140 (600)
458 1r8s_A ADP-ribosylation factor 96.7 0.00084 2.9E-08 52.0 3.0 21 4-24 2-22 (164)
459 1ksh_A ARF-like protein 2; sma 96.7 0.001 3.5E-08 52.9 3.3 23 3-25 19-41 (186)
460 2bme_A RAB4A, RAS-related prot 96.6 0.00098 3.4E-08 52.8 3.1 23 3-25 11-33 (186)
461 1jbk_A CLPB protein; beta barr 96.6 0.0011 3.6E-08 52.4 3.3 23 4-26 45-67 (195)
462 3ea0_A ATPase, para family; al 96.6 0.003 1E-07 52.7 6.2 39 4-42 6-46 (245)
463 3hu3_A Transitional endoplasmi 96.6 0.0044 1.5E-07 58.3 7.8 24 3-26 239-262 (489)
464 2gf9_A RAS-related protein RAB 96.6 0.0011 3.8E-08 53.0 3.2 23 3-25 23-45 (189)
465 2xtp_A GTPase IMAP family memb 96.6 0.0012 4.2E-08 56.0 3.6 23 3-25 23-45 (260)
466 1zj6_A ADP-ribosylation factor 96.6 0.0013 4.6E-08 52.5 3.5 22 3-24 17-38 (187)
467 2rdo_7 EF-G, elongation factor 96.6 0.024 8.2E-07 55.6 13.1 22 3-24 11-32 (704)
468 3te6_A Regulatory protein SIR3 96.6 0.0079 2.7E-07 53.5 8.7 24 4-27 47-70 (318)
469 4edh_A DTMP kinase, thymidylat 96.5 0.0012 4.1E-08 55.3 3.2 33 3-35 7-39 (213)
470 1zbd_A Rabphilin-3A; G protein 96.5 0.0014 4.7E-08 53.0 3.3 23 3-25 9-31 (203)
471 1njg_A DNA polymerase III subu 96.5 0.0013 4.5E-08 53.6 3.2 24 4-27 47-70 (250)
472 2h17_A ADP-ribosylation factor 96.5 0.0013 4.4E-08 52.3 3.1 23 3-25 22-44 (181)
473 1g3q_A MIND ATPase, cell divis 96.5 0.0038 1.3E-07 51.8 6.1 42 1-42 1-43 (237)
474 3cbq_A GTP-binding protein REM 96.5 0.001 3.5E-08 54.1 2.5 22 3-24 24-45 (195)
475 1x3s_A RAS-related protein RAB 96.5 0.0014 4.9E-08 52.2 3.2 23 3-25 16-38 (195)
476 2h57_A ADP-ribosylation factor 96.5 0.0011 3.8E-08 53.1 2.6 23 3-25 22-44 (190)
477 1z06_A RAS-related protein RAB 96.5 0.0016 5.4E-08 52.1 3.5 22 3-24 21-42 (189)
478 1tue_A Replication protein E1; 96.5 0.00088 3E-08 56.3 2.0 23 4-26 60-82 (212)
479 1hyq_A MIND, cell division inh 96.5 0.0033 1.1E-07 53.2 5.6 42 1-42 1-43 (263)
480 2a5j_A RAS-related protein RAB 96.5 0.0016 5.5E-08 52.2 3.4 23 3-25 22-44 (191)
481 3cph_A RAS-related protein SEC 96.5 0.0017 5.8E-08 52.7 3.5 23 3-25 21-43 (213)
482 3foz_A TRNA delta(2)-isopenten 96.5 0.0017 5.8E-08 57.8 3.7 25 2-26 10-34 (316)
483 4ad8_A DNA repair protein RECN 96.5 0.00049 1.7E-08 65.0 0.2 22 4-25 62-83 (517)
484 2p65_A Hypothetical protein PF 96.5 0.0012 4.2E-08 52.0 2.5 25 4-28 45-69 (187)
485 2bcg_Y Protein YP2, GTP-bindin 96.5 0.0016 5.6E-08 52.8 3.3 23 3-25 9-31 (206)
486 2o52_A RAS-related protein RAB 96.5 0.0017 5.8E-08 52.7 3.4 22 3-24 26-47 (200)
487 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0016 5.4E-08 59.0 3.5 25 3-27 25-49 (359)
488 3gmt_A Adenylate kinase; ssgci 96.4 0.0015 5E-08 55.7 3.0 23 4-26 10-32 (230)
489 2ew1_A RAS-related protein RAB 96.4 0.0017 5.9E-08 53.1 3.3 23 3-25 27-49 (201)
490 2cjw_A GTP-binding protein GEM 96.4 0.0019 6.4E-08 52.3 3.4 22 3-24 7-28 (192)
491 2iwr_A Centaurin gamma 1; ANK 96.4 0.0014 4.7E-08 51.7 2.5 22 3-24 8-29 (178)
492 3q9l_A Septum site-determining 96.4 0.0039 1.3E-07 52.5 5.5 42 1-42 1-43 (260)
493 2bjv_A PSP operon transcriptio 96.4 0.003 1E-07 53.7 4.8 33 4-36 31-63 (265)
494 3end_A Light-independent proto 96.4 0.0031 1.1E-07 54.9 5.0 39 4-42 43-81 (307)
495 2dby_A GTP-binding protein; GD 96.4 0.0013 4.4E-08 59.8 2.5 23 3-25 2-24 (368)
496 2q3h_A RAS homolog gene family 96.4 0.0022 7.5E-08 51.7 3.6 69 165-247 124-192 (201)
497 2b6h_A ADP-ribosylation factor 96.4 0.0017 5.9E-08 52.4 3.0 22 3-24 30-51 (192)
498 4bas_A ADP-ribosylation factor 96.4 0.0017 5.9E-08 52.0 2.9 23 3-25 18-40 (199)
499 2fh5_B SR-beta, signal recogni 96.4 0.0019 6.3E-08 52.8 3.2 23 3-25 8-30 (214)
500 2q6t_A DNAB replication FORK h 96.3 0.099 3.4E-06 48.1 15.1 35 4-38 202-237 (444)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.93 E-value=9.6e-27 Score=205.76 Aligned_cols=151 Identities=12% Similarity=0.119 Sum_probs=113.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc---------cCCCCC-Cc-------ccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-PV-------AMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~---------~~~~~y-~~-------~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...++| +| ..++++.+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~ 115 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL 115 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCC
Confidence 58999999999999999999999999999999998752 123344 22 235666553
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK- 127 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~- 127 (250)
++++++.+|+....... ..+.. .++++++||++|+. +|++||+||||+ ||+.++..++ +++++++
T Consensus 116 ~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSgGqkQRv~iAraL~~--~P~lLlLDEPts~LD~~~~~~i~-~~l~~l~~ 191 (275)
T 3gfo_A 116 PEDEIRKRVDNALKRTGIEHLKDKP-THCLSFGQKKRVAIAGVLVM--EPKVLILDEPTAGLDPMGVSEIM-KLLVEMQK 191 (275)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSB-GGGSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCC-cccCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHh
Confidence 56788889987543221 11122 23445999999999 999999999999 9999999999 8999987
Q ss_pred hCCCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 128 ~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
++|.+++++. |.+.....+++.++....+.+
T Consensus 192 ~~g~tvi~vt----Hdl~~~~~~~drv~~l~~G~i 222 (275)
T 3gfo_A 192 ELGITIIIAT----HDIDIVPLYCDNVFVMKEGRV 222 (275)
T ss_dssp HHCCEEEEEE----SCCSSGGGGCSEEEEEETTEE
T ss_pred hCCCEEEEEe----cCHHHHHHhCCEEEEEECCEE
Confidence 5588887664 777777777776665544443
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.93 E-value=4.5e-26 Score=208.49 Aligned_cols=162 Identities=12% Similarity=0.150 Sum_probs=123.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc----------CCCCC-------CcccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~----------~~~~y-------~~~~~i~~~i~-------- 58 (250)
+++|+||||||||||+|+|+|+++|++|+|.+.|.+... ..++| .+..++++++.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~ 135 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT 135 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCC
Confidence 589999999999999999999999999999999987531 23444 23456777654
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
++++++.+||.+.... +..+.. .++++++||+||+. +|++||+||||+ ||+.++..++ ++++++++
T Consensus 136 ~~~~~~~~v~~lL~~vgL~~~~~~-~~~~LSGGqkQRVaIArAL~~--~P~lLLlDEPTs~LD~~~~~~i~-~lL~~l~~ 211 (366)
T 3tui_C 136 PKDEVKRRVTELLSLVGLGDKHDS-YPSNLSGGQKQRVAIARALAS--NPKVLLCDQATSALDPATTRSIL-ELLKDINR 211 (366)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGTTC-CTTTSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HHHHHHHH
Confidence 5678899999754321 111222 23455999999999 999999999999 9999999999 99999975
Q ss_pred -CCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeecC
Q 025642 129 -RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (250)
Q Consensus 129 -~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vls 173 (250)
.|.++++|. |.+.....+++.+++...+.+....+.-.+++
T Consensus 212 ~~g~Tii~vT----Hdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 212 RLGLTILLIT----HEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp HSCCEEEEEE----SCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred hCCCEEEEEe----cCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 489987764 88888888888887776666655544444443
No 3
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.92 E-value=7.3e-26 Score=196.35 Aligned_cols=149 Identities=15% Similarity=0.200 Sum_probs=109.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCC-Cc------ccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-PV------AMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y-~~------~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...++| ++ ..++++++.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~ 105 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDR 105 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHH
Confidence 57999999999999999999999999999999987642 233555 22 345665542
Q ss_pred -HHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEE
Q 025642 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCA 135 (250)
Q Consensus 59 -~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~vi~ 135 (250)
++++++.+|+.+.......--...++++++||++++. +|+++|+||||+ ||+.++..++ ++++++++ .|.++++
T Consensus 106 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--~p~lllLDEPts~LD~~~~~~~~-~~l~~l~~~~g~tvi~ 182 (240)
T 2onk_A 106 RVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI--QPRLLLLDEPLSAVDLKTKGVLM-EELRFVQREFDVPILH 182 (240)
T ss_dssp HHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT--CCSSBEEESTTSSCCHHHHHHHH-HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEE
Confidence 4567888998754322111111123345999999999 999999999999 9999999999 88888865 4888876
Q ss_pred EEeccccccccHHHHHHhhHHhhh
Q 025642 136 VYLLDSQFITDVTKFISGCMASLS 159 (250)
Q Consensus 136 v~l~d~~~~~d~~~~~s~~l~~~~ 159 (250)
+. |.+.+...+++.++....
T Consensus 183 vt----Hd~~~~~~~~d~i~~l~~ 202 (240)
T 2onk_A 183 VT----HDLIEAAMLADEVAVMLN 202 (240)
T ss_dssp EE----SCHHHHHHHCSEEEEEET
T ss_pred Ee----CCHHHHHHhCCEEEEEEC
Confidence 64 776666666665544433
No 4
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.92 E-value=2.2e-25 Score=191.18 Aligned_cols=130 Identities=19% Similarity=0.162 Sum_probs=99.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-C------cccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P------VAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-~------~~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..++| + +..++++++.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~ 111 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG 111 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC
Confidence 589999999999999999999999999999999876521 22434 2 2345665543
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
++++++.+++.+...... .+.. .++++++||++++. +|+++|+||||+ ||+.++..++ +++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~l~ 187 (224)
T 2pcj_A 112 KPKKEAKERGEYLLSELGLGDKLSRKP-YELSGGEQQRVAIARALAN--EPILLFADEPTGNLDSANTKRVM-DIFLKIN 187 (224)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCTTCCG-GGSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCCh-hhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHH
Confidence 456788899876532211 1222 23345999999999 999999999999 9999999999 8899987
Q ss_pred hCCCeEEEEE
Q 025642 128 SRNFNVCAVY 137 (250)
Q Consensus 128 ~~~~~vi~v~ 137 (250)
++|.+++++.
T Consensus 188 ~~g~tvi~vt 197 (224)
T 2pcj_A 188 EGGTSIVMVT 197 (224)
T ss_dssp HTTCEEEEEC
T ss_pred HCCCEEEEEc
Confidence 6688887663
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.92 E-value=1.6e-25 Score=196.72 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=107.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc---------cCCCCC-------CcccChhhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-------PVAMDIRELIS--------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~---------~~~~~y-------~~~~~i~~~i~--------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. .+.++| .+..++++++.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~ 131 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKW 131 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCC
Confidence 58999999999999999999999999999999987652 112333 22345655542
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
++++++.+++.+..... ..+.. .++++++||++|+. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 132 ~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSgGqkQRv~lAraL~~--~p~lllLDEPts~LD~~~~~~~~-~~l~~l~~ 207 (263)
T 2olj_A 132 PREKAEAKAMELLDKVGLKDKAHAY-PDSLSGGQAQRVAIARALAM--EPKIMLFDEPTSALDPEMVGEVL-SVMKQLAN 207 (263)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSC-GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHhcCC-hhhCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh
Confidence 34677888886542111 11112 23345999999999 999999999999 9999999999 89999876
Q ss_pred CCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 129 RNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
+|.+++++ +|.+.....+++.++..
T Consensus 208 ~g~tvi~v----tHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 208 EGMTMVVV----THEMGFAREVGDRVLFM 232 (263)
T ss_dssp TTCEEEEE----CSCHHHHHHHCSEEEEE
T ss_pred CCCEEEEE----cCCHHHHHHhCCEEEEE
Confidence 78888766 47776666666655443
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.92 E-value=1.3e-25 Score=197.09 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=107.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--------------------cCCCCC-------CcccChhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-------PVAMDIREL 56 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--------------------~~~~~y-------~~~~~i~~~ 56 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...++| .+..+++++
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~ 113 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLEN 113 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHH
Confidence 58999999999999999999999999999999987653 012333 223456555
Q ss_pred hh-----------------HHHHHHHhCCCCC-CCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHH
Q 025642 57 IS-----------------LEDVMEELGLGPN-GGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (250)
Q Consensus 57 i~-----------------~~~vm~~~~L~~~-g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~ 116 (250)
+. ++++++.+|+.+. .... ..+.. .++++++||++|+. +|+++|+||||+ ||+.++.
T Consensus 114 l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~ 190 (262)
T 1b0u_A 114 VMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-PVHLSGGQQQRVSIARALAM--EPDVLLFDEPTSALDPELVG 190 (262)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTSCHHHHH
T ss_pred HHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHH
Confidence 43 3456778888643 2111 11122 13345999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 117 PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 117 ~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
.++ +++++++++|.+++++ +|.+.....+++.++..
T Consensus 191 ~~~-~~l~~l~~~g~tvi~v----tHd~~~~~~~~d~v~~l 226 (262)
T 1b0u_A 191 EVL-RIMQQLAEEGKTMVVV----THEMGFARHVSSHVIFL 226 (262)
T ss_dssp HHH-HHHHHHHHTTCCEEEE----CSCHHHHHHHCSEEEEE
T ss_pred HHH-HHHHHHHhCCCEEEEE----eCCHHHHHHhCCEEEEE
Confidence 999 8999987778888766 47776666666655444
No 7
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=3.4e-25 Score=193.92 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=106.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc------CCCCC-------CcccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~------~~~~y-------~~~~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..++| .+..++++++.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 122 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSE 122 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHH
Confidence 589999999999999999999999999999999876521 22333 22346666553
Q ss_pred ----HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025642 59 ----LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (250)
Q Consensus 59 ----~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~ 132 (250)
++++++.+|+.+..... ..+.. .++++++||++|+. +|+++|+||||+ ||+.++..++ +++++++++|.+
T Consensus 123 ~~~~~~~~l~~~gL~~~~~~~-~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g~t 198 (256)
T 1vpl_A 123 IEEMVERATEIAGLGEKIKDR-VSTYSKGMVRKLLIARALMV--NPRLAILDEPTSGLDVLNAREVR-KILKQASQEGLT 198 (256)
T ss_dssp HHHHHHHHHHHHCCGGGGGSB-GGGCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred HHHHHHHHHHHCCCchHhcCC-hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccccCHHHHHHHH-HHHHHHHhCCCE
Confidence 34677888886542111 11111 23445999999999 999999999999 9999999999 889998777888
Q ss_pred EEEEEeccccccccHHHHHHhhHH
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
|+++. |.+.....+++.++.
T Consensus 199 iiivt----Hd~~~~~~~~d~v~~ 218 (256)
T 1vpl_A 199 ILVSS----HNMLEVEFLCDRIAL 218 (256)
T ss_dssp EEEEE----CCHHHHTTTCSEEEE
T ss_pred EEEEc----CCHHHHHHHCCEEEE
Confidence 87663 666554555554443
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.92 E-value=2.4e-25 Score=192.38 Aligned_cols=145 Identities=17% Similarity=0.153 Sum_probs=104.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCCC-------CcccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~y-------~~~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..++| .+..++++++.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~ 112 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKY 112 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCS
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhh
Confidence 589999999999999999999999999999999876421 12333 23346666542
Q ss_pred ------------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 ------------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 ------------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
+.++++.+++.+.....+..+.. .++++++||++|+. +|+++|+||||+ ||+.++..++ ++++
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~--~p~llllDEPts~LD~~~~~~i~-~~l~ 189 (235)
T 3tif_A 113 RGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALAN--NPPIILADQPTWALDSKTGEKIM-QLLK 189 (235)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHH
T ss_pred ccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHH
Confidence 45677788886431011111222 23445999999999 999999999999 9999999999 8999
Q ss_pred HHHhC-CCeEEEEEeccccccccHHHHHHhhHH
Q 025642 125 HLKSR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 125 ~l~~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+++++ |.++++|. |.+. ...+++.++.
T Consensus 190 ~l~~~~g~tvi~vt----Hd~~-~~~~~d~i~~ 217 (235)
T 3tif_A 190 KLNEEDGKTVVVVT----HDIN-VARFGERIIY 217 (235)
T ss_dssp HHHHHHCCEEEEEC----SCHH-HHTTSSEEEE
T ss_pred HHHHHcCCEEEEEc----CCHH-HHHhCCEEEE
Confidence 98754 88887663 6554 2344444433
No 9
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.92 E-value=2.5e-25 Score=203.31 Aligned_cols=151 Identities=15% Similarity=0.190 Sum_probs=113.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC---------ccCCCCC-------CcccChhhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---------AAENFDY-------PVAMDIRELIS--------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp---------~~~~~~y-------~~~~~i~~~i~--------- 58 (250)
+++|+||||||||||+|+|+|+++|++|+|.+.|.+. ..+.++| .+.+++++++.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~ 111 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGR 111 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCC
Confidence 5799999999999999999999999999999998764 1123443 33557777664
Q ss_pred -------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 -------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 -------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
++++++.+++.+..... ..+.. .++++++||+||+. +|++||+|||++ ||+..+..+...+.+..++.
T Consensus 112 ~~~~~~~v~~~l~~~gL~~~~~r~-~~~LSGGq~QRValArAL~~--~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~ 188 (359)
T 3fvq_A 112 TAQERQRIEAMLELTGISELAGRY-PHELSGGQQQRAALARALAP--DPELILLDEPFSALDEQLRRQIREDMIAALRAN 188 (359)
T ss_dssp SHHHHHHHHHHHHHHTCGGGTTSC-GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCchHhcCC-hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 67789999997653222 11222 24456999999999 999999999999 99999999883344444566
Q ss_pred CCeEEEEEeccccccccHHHHHHhhHHhhhhH
Q 025642 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 130 ~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (250)
|.++++| +|...+...+++.+++...+.
T Consensus 189 g~tvi~v----THd~~ea~~~aDri~vl~~G~ 216 (359)
T 3fvq_A 189 GKSAVFV----SHDREEALQYADRIAVMKQGR 216 (359)
T ss_dssp TCEEEEE----CCCHHHHHHHCSEEEEEETTE
T ss_pred CCEEEEE----eCCHHHHHHHCCEEEEEECCE
Confidence 8898766 488877777777666554443
No 10
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=2.4e-25 Score=192.87 Aligned_cols=146 Identities=14% Similarity=0.105 Sum_probs=105.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Cc------ccChhhhhh----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS---------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~------~~~i~~~i~---------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..++| +| ..++++++.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~ 113 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE 113 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHH
Confidence 589999999999999999999999999999999876521 22444 22 335555442
Q ss_pred -----HHHHHHHhC-CCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025642 59 -----LEDVMEELG-LGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (250)
Q Consensus 59 -----~~~vm~~~~-L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~ 130 (250)
++++++.++ +........ .+.. .++++++||++|+. +|+++|+||||+ ||+.++..++ +++++++++|
T Consensus 114 ~~~~~~~~~l~~~~~l~~~~~~~~-~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~g 189 (240)
T 1ji0_A 114 GIKRDLEWIFSLFPRLKERLKQLG-GTLSGGEQQMLAIGRALMS--RPKLLMMDEPSLGLAPILVSEVF-EVIQKINQEG 189 (240)
T ss_dssp HHHHHHHHHHHHCHHHHTTTTSBS-SSSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccHhhHhcCCh-hhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHCC
Confidence 345566663 643321111 1111 23345999999999 999999999999 9999999999 8889887678
Q ss_pred CeEEEEEeccccccccHHHHHHhhHHh
Q 025642 131 FNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 131 ~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
.+++++. |...+...+++.++..
T Consensus 190 ~tvi~vt----Hd~~~~~~~~d~v~~l 212 (240)
T 1ji0_A 190 TTILLVE----QNALGALKVAHYGYVL 212 (240)
T ss_dssp CCEEEEE----SCHHHHHHHCSEEEEE
T ss_pred CEEEEEe----cCHHHHHHhCCEEEEE
Confidence 8887664 7766666666655443
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.92 E-value=4.9e-25 Score=193.84 Aligned_cols=154 Identities=19% Similarity=0.249 Sum_probs=113.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-------CcccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-------~~~~~i~~~i~----------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++++++.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 118 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQD 118 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTH
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHH
Confidence 589999999999999999999999999999999987532 11222 22345666542
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcC----CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNY----LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~----~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
++++++.+++........ .+.. .++++++||++|+.. .+|+++|+||||+ ||+.++..++ +++++++++
T Consensus 119 ~~~~~~~l~~~~l~~~~~~~~-~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~-~~l~~l~~~ 196 (266)
T 4g1u_C 119 RQALQQVMAQTDCLALAQRDY-RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL-RLLRQLTRQ 196 (266)
T ss_dssp HHHHHHHHHHTTCSTTTTSBG-GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHhcCCc-ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH-HHHHHHHHc
Confidence 677889999876532211 1122 234559999999851 1799999999999 9999999999 899998754
Q ss_pred -CCeEEEEEeccccccccHHHHHHhhHHhhhhHhH
Q 025642 130 -NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (250)
Q Consensus 130 -~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~ 163 (250)
+.+++++ +|.+.....+++.++....+.+.
T Consensus 197 ~~~tvi~v----tHdl~~~~~~~d~v~vl~~G~i~ 227 (266)
T 4g1u_C 197 EPLAVCCV----LHDLNLAALYADRIMLLAQGKLV 227 (266)
T ss_dssp SSEEEEEE----CSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCEEEEE----EcCHHHHHHhCCEEEEEECCEEE
Confidence 5677655 58887777787776665555443
No 12
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.92 E-value=6.9e-25 Score=201.68 Aligned_cols=150 Identities=14% Similarity=0.090 Sum_probs=114.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+|+|+|+++|++|+|.+.|.+.. ...++| .+.+++++++.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~ 110 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI 110 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHH
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHH
Confidence 57999999999999999999999999999999987642 222333 44567777664
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~ 132 (250)
++++++.+++.+..... ..+.. .++++++||++|+. +|++||+|||++ ||+..+..+. +++++++++ |.+
T Consensus 111 ~~~v~~~l~~~~L~~~~~r~-p~~LSGGqrQRVaiArAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~l~~l~~~~g~t 186 (381)
T 3rlf_A 111 NQRVNQVAEVLQLAHLLDRK-PKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLGRT 186 (381)
T ss_dssp HHHHHHHHHHTTCGGGTTCC-GGGSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHCCE
T ss_pred HHHHHHHHHHcCCchhhcCC-hhHCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHhCCCE
Confidence 56788899987643221 11222 23455999999999 999999999999 9999999988 888888654 889
Q ss_pred EEEEEeccccccccHHHHHHhhHHhhhhH
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMASLSAM 161 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (250)
+++| +|...+...+++.+++...+.
T Consensus 187 ii~v----THd~~ea~~~aDri~vl~~G~ 211 (381)
T 3rlf_A 187 MIYV----THDQVEAMTLADKIVVLDAGR 211 (381)
T ss_dssp EEEE----CSCHHHHHHHCSEEEEEETTE
T ss_pred EEEE----ECCHHHHHHhCCEEEEEECCE
Confidence 8766 477777777777666554443
No 13
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.91 E-value=1.3e-24 Score=185.44 Aligned_cols=141 Identities=14% Similarity=0.082 Sum_probs=103.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC--ccCCCCC-------CcccChhhhhh--------------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDY-------PVAMDIRELIS--------------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp--~~~~~~y-------~~~~~i~~~i~--------------~~ 60 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.++ ....++| .+..++++++. ++
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 116 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIM 116 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHH
Confidence 4789999999999999999999999999999998764 1222333 22345555543 45
Q ss_pred HHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 025642 61 DVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (250)
Q Consensus 61 ~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l 138 (250)
++++.+|+... .... .+.. .++++++||++++. +|+++|+||||+ ||+.++..++ +++++++++|.+++++.
T Consensus 117 ~~l~~~gl~~~-~~~~-~~LSgGqkqrv~laraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~g~tiiivt- 190 (214)
T 1sgw_A 117 DALESVEVLDL-KKKL-GELSQGTIRRVQLASTLLV--NAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVIISS- 190 (214)
T ss_dssp HHHHHTTCCCT-TSBG-GGSCHHHHHHHHHHHHTTS--CCSEEEEESTTTTSCTTTHHHHH-HHHHHHHHHHSEEEEEE-
T ss_pred HHHHHcCCCcC-CCCh-hhCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEEe-
Confidence 67888888764 2221 1222 23455999999999 999999999999 9999999999 88888875578876663
Q ss_pred ccccccccHHHHHHh
Q 025642 139 LDSQFITDVTKFISG 153 (250)
Q Consensus 139 ~d~~~~~d~~~~~s~ 153 (250)
|.......+++.
T Consensus 191 ---Hd~~~~~~~~d~ 202 (214)
T 1sgw_A 191 ---REELSYCDVNEN 202 (214)
T ss_dssp ---SSCCTTSSEEEE
T ss_pred ---CCHHHHHHhCCE
Confidence 555544444443
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.91 E-value=1.2e-24 Score=190.28 Aligned_cols=146 Identities=19% Similarity=0.130 Sum_probs=105.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--------CCCCC-Cc------ccChhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELI----------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--------~~~~y-~~------~~~i~~~i----------- 57 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..++| +| ..++++++
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~ 114 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESP 114 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCc
Confidence 589999999999999999999999999999999876521 12333 22 22333221
Q ss_pred ------------------hHHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHH
Q 025642 58 ------------------SLEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (250)
Q Consensus 58 ------------------~~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~ 117 (250)
.++++++.+|+.+...... .+.. .++++++||++|+. +|+++|+||||+ ||+.++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~~~ 191 (257)
T 1g6h_A 115 LNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-GELSGGQMKLVEIGRALMT--NPKMIVMDEPIAGVAPGLAHD 191 (257)
T ss_dssp HHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-GGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHHHH
T ss_pred ccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc-hhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHH
Confidence 1456677788764322111 1111 23345999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 118 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 118 i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++ +++++++++|.+++++ +|.+.....+++.++..
T Consensus 192 l~-~~l~~l~~~g~tvi~v----tHd~~~~~~~~d~v~~l 226 (257)
T 1g6h_A 192 IF-NHVLELKAKGITFLII----EHRLDIVLNYIDHLYVM 226 (257)
T ss_dssp HH-HHHHHHHHTTCEEEEE----CSCCSTTGGGCSEEEEE
T ss_pred HH-HHHHHHHHCCCEEEEE----ecCHHHHHHhCCEEEEE
Confidence 99 8999987778888766 47776666666655443
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.91 E-value=9.5e-25 Score=199.58 Aligned_cols=148 Identities=15% Similarity=0.089 Sum_probs=109.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+|+|+|+++|++|+|.++|.+.. .+.++| .+.+++++++.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~ 110 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEV 110 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHH
Confidence 57899999999999999999999999999999987642 223333 34456666653
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~ 132 (250)
++++++.+++.+..... ..+.. .++++++||++|+. +|+++|+|||++ ||+..+..+. +.++++.++ |.+
T Consensus 111 ~~~v~~~l~~~~L~~~~~r~-~~~LSgGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~t 186 (359)
T 2yyz_A 111 EKRVVEIARKLLIDNLLDRK-PTQLSGGQQQRVALARALVK--QPKVLLFDEPLSNLDANLRMIMR-AEIKHLQQELGIT 186 (359)
T ss_dssp THHHHHHHHHTTCGGGTTSC-GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHCCE
T ss_pred HHHHHHHHHHcCCchHhcCC-hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCE
Confidence 56788899987543221 11222 23455999999999 999999999999 9999999988 888888654 888
Q ss_pred EEEEEeccccccccHHHHHHhhHHhhh
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMASLS 159 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (250)
+++|. |...+...+++.++....
T Consensus 187 vi~vT----Hd~~~~~~~adri~vl~~ 209 (359)
T 2yyz_A 187 SVYVT----HDQAEAMTMASRIAVFNQ 209 (359)
T ss_dssp EEEEE----SCHHHHHHHCSEEEEEET
T ss_pred EEEEc----CCHHHHHHhCCEEEEEEC
Confidence 87664 666666666665544433
No 16
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.1e-24 Score=199.33 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=111.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+|+|+|+++|++|+|.++|.+.. .+.++| .+.+++++++.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~ 110 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEI 110 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHH
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHH
Confidence 57899999999999999999999999999999987642 223333 34456776653
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~ 132 (250)
++++++.+++.+...... .+.. .++++++||++|+. +|+++|+|||++ ||+..+..+. +.++++.++ |.+
T Consensus 111 ~~~v~~~l~~~~L~~~~~r~~-~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~t 186 (362)
T 2it1_A 111 DKKVREVAKMLHIDKLLNRYP-WQLSGGQQQRVAIARALVK--EPEVLLLDEPLSNLDALLRLEVR-AELKRLQKELGIT 186 (362)
T ss_dssp HHHHHHHHHHTTCTTCTTCCG-GGSCHHHHHHHHHHHHHTT--CCSEEEEESGGGGSCHHHHHHHH-HHHHHHHHHHTCE
T ss_pred HHHHHHHHHHcCCchHhhCCh-hhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHHhCCCE
Confidence 456788899976532221 1222 23455999999999 999999999999 9999999988 888888654 888
Q ss_pred EEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
+++|. |...+...+++.++....+
T Consensus 187 vi~vT----Hd~~~a~~~adri~vl~~G 210 (362)
T 2it1_A 187 TVYVT----HDQAEALAMADRIAVIREG 210 (362)
T ss_dssp EEEEE----SCHHHHHHHCSEEEEEETT
T ss_pred EEEEC----CCHHHHHHhCCEEEEEECC
Confidence 87664 7776666666665554444
No 17
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.91 E-value=1.4e-24 Score=197.73 Aligned_cols=149 Identities=13% Similarity=0.154 Sum_probs=111.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+|+|+|+++|++|+|.++|.+.. .+.++| ++.+++++++.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~ 107 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKR 107 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHH
T ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHH
Confidence 57999999999999999999999999999999987642 123333 34557777654
Q ss_pred HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEE
Q 025642 59 LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCA 135 (250)
Q Consensus 59 ~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~vi~ 135 (250)
++++++.+++.+...... .+.. .++++++||++|+. +|+++|+|||++ ||+..+..+. ++++++++ .|.++++
T Consensus 108 v~~~l~~~~L~~~~~~~~-~~LSgGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~tii~ 183 (348)
T 3d31_A 108 VLDTARDLKIEHLLDRNP-LTLSGGEQQRVALARALVT--NPKILLLDEPLSALDPRTQENAR-EMLSVLHKKNKLTVLH 183 (348)
T ss_dssp HHHHHHHTTCTTTTTSCG-GGSCHHHHHHHHHHHHTTS--CCSEEEEESSSTTSCHHHHHHHH-HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCchHhcCCh-hhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHHhcCCEEEE
Confidence 456788899876532211 1222 23455999999999 999999999999 9999999988 88888864 5888876
Q ss_pred EEeccccccccHHHHHHhhHHhhhh
Q 025642 136 VYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 136 v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
|. |...+...+++.++....+
T Consensus 184 vT----Hd~~~~~~~adri~vl~~G 204 (348)
T 3d31_A 184 IT----HDQTEARIMADRIAVVMDG 204 (348)
T ss_dssp EE----SCHHHHHHHCSEEEEESSS
T ss_pred Ee----CCHHHHHHhCCEEEEEECC
Confidence 64 7766666666655544333
No 18
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.91 E-value=1.9e-24 Score=197.33 Aligned_cols=149 Identities=16% Similarity=0.161 Sum_probs=111.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+|+|+|+++|++|+|.++|.+.. .+.++| .+.+++++++.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~ 122 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEM 122 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHH
Confidence 57899999999999999999999999999999987642 233433 33456776653
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~ 132 (250)
++++++.+++.+..... ..+.. .++++++||++|+. +|+++|+|||++ ||+..+..+. ++++++.++ |.+
T Consensus 123 ~~~v~~~l~~~gL~~~~~r~-~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~t 198 (355)
T 1z47_A 123 DARVRELLRFMRLESYANRF-PHELSGGQQQRVALARALAP--RPQVLLFDEPFAAIDTQIRRELR-TFVRQVHDEMGVT 198 (355)
T ss_dssp HHHHHHHHHHTTCGGGTTSC-GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTCCSSHHHHHHHH-HHHHHHHHHHTCE
T ss_pred HHHHHHHHHHcCChhHhcCC-cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCE
Confidence 45678889987543221 11222 23455999999999 999999999999 9999999988 888888654 888
Q ss_pred EEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
+++| +|...+...+++.++....+
T Consensus 199 vi~v----THd~~~a~~~adri~vl~~G 222 (355)
T 1z47_A 199 SVFV----THDQEEALEVADRVLVLHEG 222 (355)
T ss_dssp EEEE----CSCHHHHHHHCSEEEEEETT
T ss_pred EEEE----CCCHHHHHHhCCEEEEEECC
Confidence 8766 47777666666665544433
No 19
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.91 E-value=4.1e-25 Score=195.67 Aligned_cols=145 Identities=15% Similarity=0.252 Sum_probs=104.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc---------cCCCCC-Cc--------ccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-PV--------AMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~---------~~~~~y-~~--------~~~i~~~i~------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...++| +| ..++++++.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~ 128 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI 128 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC----
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhcc
Confidence 57999999999999999999999999999999997653 123444 21 125555432
Q ss_pred -------------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 59 -------------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 59 -------------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
++++++.+|+........ .+.. .++++++||++|+. +|+++|+||||+ ||+.++..++ +++
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~LSgGqkqRv~lAraL~~--~p~lLlLDEPts~LD~~~~~~l~-~~l 204 (279)
T 2ihy_A 129 GVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-GYLSTGEKQRVMIARALMG--QPQVLILDEPAAGLDFIARESLL-SIL 204 (279)
T ss_dssp -----CCHHHHHHHHHHHHHTTCGGGTTSBG-GGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHHHHHH-HHH
T ss_pred ccccCCcHHHHHHHHHHHHHcCChhHhcCCh-hhCCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHH-HHH
Confidence 456678888865422111 1111 23345999999999 999999999999 9999999999 888
Q ss_pred HHHHhCCCeE--EEEEeccccccccHHHHHHhhHH
Q 025642 124 DHLKSRNFNV--CAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 124 ~~l~~~~~~v--i~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
++++++|.++ +++. |.+.....+++.++.
T Consensus 205 ~~l~~~g~tv~~iivt----Hd~~~~~~~~d~v~~ 235 (279)
T 2ihy_A 205 DSLSDSYPTLAMIYVT----HFIEEITANFSKILL 235 (279)
T ss_dssp HHHHHHCTTCEEEEEE----SCGGGCCTTCCEEEE
T ss_pred HHHHHCCCEEEEEEEe----cCHHHHHHhCCEEEE
Confidence 8887558787 6663 555544455554443
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.91 E-value=1.9e-24 Score=189.97 Aligned_cols=146 Identities=19% Similarity=0.171 Sum_probs=106.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc----cCCCCC-Cc-------ccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDY-PV-------AMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~----~~~~~y-~~-------~~~i~~~i~------------- 58 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...++| ++ ..++++++.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~ 114 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV 114 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHH
Confidence 58999999999999999999999999999999987652 122333 21 234555432
Q ss_pred --HHHHHHHhCCC--CCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025642 59 --LEDVMEELGLG--PNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (250)
Q Consensus 59 --~~~vm~~~~L~--~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~ 132 (250)
++++++.+|+. +...... .+.. .++++++||++|+. +|+++|+||||+ ||+.++..++ +++++++++|.+
T Consensus 115 ~~~~~~l~~~gl~~~~~~~~~~-~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g~t 190 (266)
T 2yz2_A 115 PLVKKAMEFVGLDFDSFKDRVP-FFLSGGEKRRVAIASVIVH--EPDILILDEPLVGLDREGKTDLL-RIVEKWKTLGKT 190 (266)
T ss_dssp HHHHHHHHHTTCCHHHHTTCCG-GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred HHHHHHHHHcCcCCcccccCCh-hhCCHHHHHHHHHHHHHHc--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHcCCE
Confidence 45678888887 4321111 1111 23345999999999 999999999999 9999999999 889998766888
Q ss_pred EEEEEeccccccccHHHHHHhhHHh
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
++++ +|.......+++.++..
T Consensus 191 ii~v----tHd~~~~~~~~d~v~~l 211 (266)
T 2yz2_A 191 VILI----SHDIETVINHVDRVVVL 211 (266)
T ss_dssp EEEE----CSCCTTTGGGCSEEEEE
T ss_pred EEEE----eCCHHHHHHhCCEEEEE
Confidence 8766 46666555565554443
No 21
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.90 E-value=2.1e-24 Score=196.96 Aligned_cols=149 Identities=15% Similarity=0.107 Sum_probs=110.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC----------ccCCCCC-------CcccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----------AAENFDY-------PVAMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp----------~~~~~~y-------~~~~~i~~~i~-------- 58 (250)
+++|+||||||||||+|+|+|+++|++|+|.+.|.+. ....++| .+.+++++++.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 112 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM 112 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC
Confidence 5789999999999999999999999999999988653 1223333 33456666653
Q ss_pred --------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 59 --------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 59 --------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
++++++.+++.+..... ..+.. .++++++||++|+. +|+++|+|||++ ||+..+..+. +.++++.+
T Consensus 113 ~~~~~~~~v~~~l~~~~L~~~~~~~-~~~LSGGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~ 188 (353)
T 1oxx_K 113 SKEEIRKRVEEVAKILDIHHVLNHF-PRELSGAQQQRVALARALVK--DPSLLLLDEPFSNLDARMRDSAR-ALVKEVQS 188 (353)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSC-GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCGGGHHHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCC-hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHH
Confidence 56788889987543221 11222 23455999999999 999999999999 9999999988 88888865
Q ss_pred -CCCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 129 -RNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 129 -~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
.|.++++|. |...+...+++.++....+
T Consensus 189 ~~g~tvi~vT----Hd~~~~~~~adri~vl~~G 217 (353)
T 1oxx_K 189 RLGVTLLVVS----HDPADIFAIADRVGVLVKG 217 (353)
T ss_dssp HHCCEEEEEE----SCHHHHHHHCSEEEEEETT
T ss_pred hcCCEEEEEe----CCHHHHHHhCCEEEEEECC
Confidence 488887664 7776666666655544333
No 22
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.90 E-value=3.4e-24 Score=196.79 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=110.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC-----------ccCCCCC-------CcccChhhhhh-------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----------AAENFDY-------PVAMDIRELIS------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp-----------~~~~~~y-------~~~~~i~~~i~------- 58 (250)
+++|+||||||||||+|+|+|+++|++|+|.+.|.+. ..+.++| .+..++++++.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 110 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK 110 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999999999999999988553 2223333 33456776653
Q ss_pred ---------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 59 ---------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 59 ---------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
++++++.+++.+..... ..+.. .++++++||++|+. +|+++|+|||++ ||+..+..+. +.++++.
T Consensus 111 ~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~ 186 (372)
T 1g29_1 111 VPRQEIDQRVREVAELLGLTELLNRK-PRELSGGQRQRVALGRAIVR--KPQVFLMDEPLSNLDAKLRVRMR-AELKKLQ 186 (372)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTTCC-GGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTSCHHHHHHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCC-cccCCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-HHHHHHH
Confidence 45678889987543221 11222 23455999999999 999999999999 9999999988 8888886
Q ss_pred hC-CCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 128 ~~-~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
++ |.++++|. |...+...+++.++....+
T Consensus 187 ~~~g~tvi~vT----Hd~~~a~~~adri~vl~~G 216 (372)
T 1g29_1 187 RQLGVTTIYVT----HDQVEAMTMGDRIAVMNRG 216 (372)
T ss_dssp HHHTCEEEEEE----SCHHHHHHHCSEEEEEETT
T ss_pred HhcCCEEEEEC----CCHHHHHHhCCEEEEEeCC
Confidence 54 88887664 7776666676665554444
No 23
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.90 E-value=3.3e-24 Score=196.83 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=109.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-----cCCCCC-------CcccChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-----~~~~~y-------~~~~~i~~~i~------------- 58 (250)
+++|+||||||||||+|+|+|+++|++|+|.++|.+.. .+.++| ++.+++++++.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~ 118 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEI 118 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHH
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHH
Confidence 57899999999999999999999999999999987642 223333 33456666653
Q ss_pred ---HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025642 59 ---LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN 132 (250)
Q Consensus 59 ---~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~ 132 (250)
++++++.+++.+..... ..+.. .++++++||++|+. +|+++|+|||++ ||+..+..+. +.++++.++ |.+
T Consensus 119 ~~~v~~~l~~~~L~~~~~r~-~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~t 194 (372)
T 1v43_A 119 DKRVRWAAELLQIEELLNRY-PAQLSGGQRQRVAVARAIVV--EPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQQKLKVT 194 (372)
T ss_dssp HHHHHHHHHHTTCGGGTTSC-TTTCCSSCHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHTCE
T ss_pred HHHHHHHHHHcCChhHhcCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCE
Confidence 56788889986542111 11111 23456999999999 999999999999 9999999988 888888654 888
Q ss_pred EEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 133 VCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
+++|. |...+...+++.++....+
T Consensus 195 vi~vT----Hd~~~a~~~adri~vl~~G 218 (372)
T 1v43_A 195 TIYVT----HDQVEAMTMGDRIAVMNRG 218 (372)
T ss_dssp EEEEE----SCHHHHHHHCSEEEEEETT
T ss_pred EEEEe----CCHHHHHHhCCEEEEEECC
Confidence 87664 6666666666665544433
No 24
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.90 E-value=6.4e-24 Score=185.07 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=105.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-------CcccChhhhhh-----------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-------~~~~~i~~~i~----------- 58 (250)
+++|+||||||||||+++|+|+++|+ |+|.+.|.+... ..++| .+..++++++.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 106 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL 106 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHH
Confidence 57999999999999999999999999 999999876421 12333 22345666543
Q ss_pred HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCC-------EEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDD-------YLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 ~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~-------~lllDEPt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
++++++.+|+.+...... .+.. .+++++.||++|+. +|+ ++|+||||+ ||+.++..+. +++++++++
T Consensus 107 ~~~~l~~~~l~~~~~~~~-~~LSgGq~qrv~lAraL~~--~p~~~~~~~~lllLDEPts~LD~~~~~~l~-~~l~~l~~~ 182 (249)
T 2qi9_C 107 LNDVAGALALDDKLGRST-NQLSGGEWQRVRLAAVVLQ--ITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALSQQ 182 (249)
T ss_dssp HHHHHHHTTCGGGTTSBG-GGCCHHHHHHHHHHHHHHH--HCTTTCTTCCEEEESSTTTTCCHHHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHcCChhHhcCCh-hhCCHHHHHHHHHHHHHHc--CCCcCCCCCeEEEEECCcccCCHHHHHHHH-HHHHHHHhC
Confidence 467888888865422111 1111 23345999999999 999 999999999 9999999999 889998766
Q ss_pred CCeEEEEEeccccccccHHHHHHhhHH
Q 025642 130 NFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 130 ~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
|.+++++ +|.......+++.++.
T Consensus 183 g~tviiv----tHd~~~~~~~~d~v~~ 205 (249)
T 2qi9_C 183 GLAIVMS----SHDLNHTLRHAHRAWL 205 (249)
T ss_dssp TCEEEEE----CSCHHHHHHHCSEEEE
T ss_pred CCEEEEE----eCCHHHHHHhCCEEEE
Confidence 8888665 4776655566555443
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.89 E-value=1.1e-23 Score=183.48 Aligned_cols=139 Identities=16% Similarity=0.205 Sum_probs=98.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC--CCCCCceEEEeecCCcc--------CCCCC-Cc------ccChhhhhh--------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS-------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~--l~~~~G~i~i~~~dp~~--------~~~~y-~~------~~~i~~~i~-------- 58 (250)
+++|+||||||||||+++|+|+ ++|++|+|.+.|.+... ..+.| +| ..++++++.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 110 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLG 110 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhcc
Confidence 5899999999999999999998 78999999999876521 12344 22 234444432
Q ss_pred -----------HHHHHHHhCCC-CCCCchhhhh-hh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025642 59 -----------LEDVMEELGLG-PNGGLIYCME-HL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (250)
Q Consensus 59 -----------~~~vm~~~~L~-~~g~~~~~~~-~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll 123 (250)
+.++++.+|+. ..... +..+ .. .++++++||++|+. +|+++|+||||+ ||+.++..++ +++
T Consensus 111 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l 186 (250)
T 2d2e_A 111 REVGVAEFWTKVKKALELLDWDESYLSR-YLNEGFSGGEKKRNEILQLLVL--EPTYAVLDETDSGLDIDALKVVA-RGV 186 (250)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCCGGGGGS-BTTCC----HHHHHHHHHHHHH--CCSEEEEECGGGTTCHHHHHHHH-HHH
T ss_pred ccCCHHHHHHHHHHHHHHcCCChhHhcC-CcccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-HHH
Confidence 34567778884 32111 1111 11 23344999999999 999999999999 9999999999 888
Q ss_pred HHHHhCCCeEEEEEeccccccccHHHH
Q 025642 124 DHLKSRNFNVCAVYLLDSQFITDVTKF 150 (250)
Q Consensus 124 ~~l~~~~~~vi~v~l~d~~~~~d~~~~ 150 (250)
++++++|.+++++ +|.......+
T Consensus 187 ~~l~~~g~tvi~v----tHd~~~~~~~ 209 (250)
T 2d2e_A 187 NAMRGPNFGALVI----THYQRILNYI 209 (250)
T ss_dssp HHHCSTTCEEEEE----CSSSGGGGTS
T ss_pred HHHHhcCCEEEEE----ecCHHHHHHh
Confidence 9886668888666 3655443333
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.89 E-value=5.2e-23 Score=179.65 Aligned_cols=143 Identities=17% Similarity=0.227 Sum_probs=100.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEe---ecCCccCCCCCCcccChhhhh--------------------hHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV---NLDPAAENFDYPVAMDIRELI--------------------SLE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~---~~dp~~~~~~y~~~~~i~~~i--------------------~~~ 60 (250)
+++|+||||||||||+++|+|+++|++|+|.+. +.-|. ...+.+..++++++ .++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q--~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~ 110 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQ--FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECS--CCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcC--CCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence 579999999999999999999999999999731 11111 11111122332221 256
Q ss_pred HHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEEE
Q 025642 61 DVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVY 137 (250)
Q Consensus 61 ~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~vi~v~ 137 (250)
++++.+|+.+..... ..+.. .++++++||++|+. +|+++|+||||+ ||+.++..++ +++++++++ |.+++++
T Consensus 111 ~~l~~~~l~~~~~~~-~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~~g~tvi~v- 185 (253)
T 2nq2_C 111 QALDYLNLTHLAKRE-FTSLSGGQRQLILIARAIAS--ECKLILLDEPTSALDLANQDIVL-SLLIDLAQSQNMTVVFT- 185 (253)
T ss_dssp HHHHHTTCGGGTTSB-GGGSCHHHHHHHHHHHHHHT--TCSEEEESSSSTTSCHHHHHHHH-HHHHHHHHTSCCEEEEE-
T ss_pred HHHHHcCChHHhcCC-hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE-
Confidence 778888887543221 11122 23345999999999 999999999999 9999999999 888888766 8888766
Q ss_pred eccccccccHHHHHHhhHH
Q 025642 138 LLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 138 l~d~~~~~d~~~~~s~~l~ 156 (250)
+|.......+++.++.
T Consensus 186 ---tHd~~~~~~~~d~v~~ 201 (253)
T 2nq2_C 186 ---THQPNQVVAIANKTLL 201 (253)
T ss_dssp ---ESCHHHHHHHCSEEEE
T ss_pred ---ecCHHHHHHhCCEEEE
Confidence 4776666666665444
No 27
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=2.4e-23 Score=182.87 Aligned_cols=142 Identities=12% Similarity=0.181 Sum_probs=102.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc----cCCCC-C-Ccc----cChhhhhh------------HHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFD-Y-PVA----MDIRELIS------------LED 61 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~----~~~~~-y-~~~----~~i~~~i~------------~~~ 61 (250)
+++|+||||||||||+++|+|++ |++|+|.+.|.+.. .+.++ | +|+ .++++++. +++
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~ 110 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLE 110 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHH
Confidence 57999999999999999999999 99999999986642 23455 5 332 35666553 456
Q ss_pred HHHHhCCC-CCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 025642 62 VMEELGLG-PNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (250)
Q Consensus 62 vm~~~~L~-~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l 138 (250)
+++.+++. ...... ..+.. .++++++||++|+. +|+++|+||||+ ||+.++..+. ++++++++ +++++
T Consensus 111 ~l~~~gl~~~~~~~~-~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L~~~~~---tviiv-- 181 (263)
T 2pjz_A 111 MLKALKLGEEILRRK-LYKLSAGQSVLVRTSLALAS--QPEIVGLDEPFENVDAARRHVIS-RYIKEYGK---EGILV-- 181 (263)
T ss_dssp HHHHTTCCGGGGGSB-GGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHSCS---EEEEE--
T ss_pred HHHHcCCChhHhcCC-hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCccccCHHHHHHHH-HHHHHhcC---cEEEE--
Confidence 78888887 432111 11111 23345999999999 999999999999 9999999988 78777643 66555
Q ss_pred ccccccccHHHHHH-hhHHh
Q 025642 139 LDSQFITDVTKFIS-GCMAS 157 (250)
Q Consensus 139 ~d~~~~~d~~~~~s-~~l~~ 157 (250)
+|.......+++ .++..
T Consensus 182 --tHd~~~~~~~~d~~i~~l 199 (263)
T 2pjz_A 182 --THELDMLNLYKEYKAYFL 199 (263)
T ss_dssp --ESCGGGGGGCTTSEEEEE
T ss_pred --EcCHHHHHHhcCceEEEE
Confidence 466655555555 54443
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.88 E-value=6.5e-23 Score=178.36 Aligned_cols=130 Identities=18% Similarity=0.105 Sum_probs=93.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~ 60 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+... +.++| +| ..++++++. +.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 116 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI 116 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHH
Confidence 589999999999999999999999999999999976521 12333 22 135666553 34
Q ss_pred HHHHHhCCCCCC-----Cchh-----hhhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 61 DVMEELGLGPNG-----GLIY-----CMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 61 ~vm~~~~L~~~g-----~~~~-----~~~~-~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
++++.+++.... |+.. ..+. ..++++++||++|+. +|+++|+||||+ ||+.++..++ +++++++
T Consensus 117 ~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~- 192 (247)
T 2ff7_A 117 YAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN--NPKILIFDEATSALDYESEHVIM-RNMHKIC- 192 (247)
T ss_dssp HHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT--CCSEEEECCCCSCCCHHHHHHHH-HHHHHHH-
T ss_pred HHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-
Confidence 555566653210 0000 0011 123345999999999 999999999999 9999999999 8888885
Q ss_pred CCCeEEEEE
Q 025642 129 RNFNVCAVY 137 (250)
Q Consensus 129 ~~~~vi~v~ 137 (250)
+|.+++++.
T Consensus 193 ~g~tviivt 201 (247)
T 2ff7_A 193 KGRTVIIIA 201 (247)
T ss_dssp TTSEEEEEC
T ss_pred CCCEEEEEe
Confidence 588887663
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.88 E-value=2.8e-23 Score=183.10 Aligned_cols=130 Identities=17% Similarity=0.157 Sum_probs=91.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~------------ 58 (250)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| +|+ .++++++.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 126 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEI 126 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChHHHH
Confidence 589999999999999999999999999999999876521 12333 221 25555543
Q ss_pred --------HHHHHHHh--CCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 59 --------LEDVMEEL--GLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 59 --------~~~vm~~~--~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
+.++++.+ |+....+.. ..+.. .++++++||++|+. +|+++|+||||+ ||+.++..++ ++++++
T Consensus 127 ~~~~~~~~~~~~l~~l~~gl~~~~~~~-~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~ 202 (271)
T 2ixe_A 127 TAVAMESGAHDFISGFPQGYDTEVGET-GNQLSGGQRQAVALARALIR--KPRLLILDNATSALDAGNQLRVQ-RLLYES 202 (271)
T ss_dssp HHHHHHHTCHHHHHHSTTGGGSBCCGG-GTTSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHC
T ss_pred HHHHHHHhHHHHHHhhhcchhhhhcCC-cCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHH
Confidence 12233333 333221111 11111 23345999999999 999999999999 9999999998 888888
Q ss_pred Hh-CCCeEEEEE
Q 025642 127 KS-RNFNVCAVY 137 (250)
Q Consensus 127 ~~-~~~~vi~v~ 137 (250)
.+ .|.+++++.
T Consensus 203 ~~~~g~tviivt 214 (271)
T 2ixe_A 203 PEWASRTVLLIT 214 (271)
T ss_dssp TTTTTSEEEEEC
T ss_pred HhhcCCEEEEEe
Confidence 54 478887663
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.87 E-value=9.3e-23 Score=179.32 Aligned_cols=138 Identities=15% Similarity=0.144 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC--CCCCCceEEEeecCCcc--------CCCCC-Cc------ccChhhhh---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELI--------- 57 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~--l~~~~G~i~i~~~dp~~--------~~~~y-~~------~~~i~~~i--------- 57 (250)
+++|+||||||||||+++|+|+ ++|++|+|.+.|.+... ..+.| ++ ..++.+++
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~ 127 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRS 127 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhh
Confidence 5899999999999999999999 47899999999876421 12333 22 22332221
Q ss_pred --------------hHHHHHHHhCCCC-CCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 58 --------------SLEDVMEELGLGP-NGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 58 --------------~~~~vm~~~~L~~-~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
.++++++.+|+.. ........+.. .++++++||++|+. +|+++|+||||+ ||+.++..++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~--~p~lLlLDEPts~LD~~~~~~l~- 204 (267)
T 2zu0_C 128 YRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKVVA- 204 (267)
T ss_dssp GGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHHH-
T ss_pred hhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHH-
Confidence 1456778888863 22111100111 23455999999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHH
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVT 148 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~ 148 (250)
+++++++++|.+++++ +|......
T Consensus 205 ~~l~~l~~~g~tviiv----tHd~~~~~ 228 (267)
T 2zu0_C 205 DGVNSLRDGKRSFIIV----THYQRILD 228 (267)
T ss_dssp HHHHTTCCSSCEEEEE----CSSGGGGG
T ss_pred HHHHHHHhcCCEEEEE----eeCHHHHH
Confidence 8888886668888665 35554333
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.87 E-value=5.8e-23 Score=178.10 Aligned_cols=130 Identities=17% Similarity=0.119 Sum_probs=95.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc-------cCCCCC-Ccc-----cChhhhhh-----------H
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PVA-----MDIRELIS-----------L 59 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~-------~~~~~y-~~~-----~~i~~~i~-----------~ 59 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.. .+.++| +++ .++++++. +
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~ 109 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDL 109 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCCHHHH
Confidence 58999999999999999999999999999999987642 123444 222 24555543 4
Q ss_pred HHHHHHhCCCCCCCch-----hh----hhhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 60 EDVMEELGLGPNGGLI-----YC----MEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 60 ~~vm~~~~L~~~g~~~-----~~----~~~~--~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
.++++.+++....... .. ...+ .++++++||++|+. +|+++|+||||+ ||+.++..++ +++++++
T Consensus 110 ~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~ 186 (243)
T 1mv5_A 110 WQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR--NPKILMLDEATASLDSESESMVQ-KALDSLM 186 (243)
T ss_dssp HHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSCSSCSSSCCHHH-HHHHHHH
T ss_pred HHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHhc
Confidence 5667777875432110 00 0111 13345999999999 999999999999 9999999999 8888886
Q ss_pred hCCCeEEEEE
Q 025642 128 SRNFNVCAVY 137 (250)
Q Consensus 128 ~~~~~vi~v~ 137 (250)
+|.+++++.
T Consensus 187 -~~~tvi~vt 195 (243)
T 1mv5_A 187 -KGRTTLVIA 195 (243)
T ss_dssp -TTSEEEEEC
T ss_pred -CCCEEEEEe
Confidence 588887663
No 32
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.85 E-value=2.4e-22 Score=180.09 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=95.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~ 60 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| +| ..++++++. +.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~ 161 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVE 161 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHH
Confidence 589999999999999999999999999999999987632 23444 22 235676664 34
Q ss_pred HHHHHhCCCCCC-----Cchhh-----hh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 61 DVMEELGLGPNG-----GLIYC-----ME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 61 ~vm~~~~L~~~g-----~~~~~-----~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
++++..++...- |.-.. .+ ...++++++|||+|+. +|++|||||||+ ||+.+...+. +.++++.+
T Consensus 162 ~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~--~p~iLlLDEPts~LD~~~~~~i~-~~l~~l~~ 238 (306)
T 3nh6_A 162 AAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK--APGIILLDEATSALDTSNERAIQ-ASLAKVCA 238 (306)
T ss_dssp HHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSSCCCHHHHHHHH-HHHHHHHT
T ss_pred HHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHcC
Confidence 444444442110 00000 01 1123455999999999 999999999999 9999999998 88888854
Q ss_pred CCCeEEEEEecccccccc
Q 025642 129 RNFNVCAVYLLDSQFITD 146 (250)
Q Consensus 129 ~~~~vi~v~l~d~~~~~d 146 (250)
+.|+++| +|.+..
T Consensus 239 -~~Tvi~i----tH~l~~ 251 (306)
T 3nh6_A 239 -NRTTIVV----AHRLST 251 (306)
T ss_dssp -TSEEEEE----CCSHHH
T ss_pred -CCEEEEE----EcChHH
Confidence 6777655 466543
No 33
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.85 E-value=2e-21 Score=186.14 Aligned_cols=147 Identities=13% Similarity=0.125 Sum_probs=104.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--CCCCCCcccChhhhhh-------------HHHHHHHhCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS-------------LEDVMEELGL 68 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--~~~~y~~~~~i~~~i~-------------~~~vm~~~~L 68 (250)
+++|+||||||||||+++|+|+++|++|+|.+.+...+. +........++++.+. ++++++.+++
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l 375 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNL 375 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCC
Confidence 589999999999999999999999999999876644311 1111112334554432 3556666777
Q ss_pred CCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEEeccccccc
Q 025642 69 GPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFIT 145 (250)
Q Consensus 69 ~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~vi~v~l~d~~~~~ 145 (250)
.+..... ..+.. .++++++||++|+. +|++||+||||+ ||+.++..++ ++++++++ .|.++++| +|.+.
T Consensus 376 ~~~~~~~-~~~LSGGq~QRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~~l~~l~~~~g~tvi~v----sHdl~ 447 (538)
T 3ozx_A 376 HRLLESN-VNDLSGGELQKLYIAATLAK--EADLYVLDQPSSYLDVEERYIVA-KAIKRVTRERKAVTFII----DHDLS 447 (538)
T ss_dssp GGCTTSB-GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEE----CSCHH
T ss_pred HHHhcCC-hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCHH
Confidence 5432111 11122 23455999999999 999999999999 9999999999 89998864 58888766 47777
Q ss_pred cHHHHHHhhHHhh
Q 025642 146 DVTKFISGCMASL 158 (250)
Q Consensus 146 d~~~~~s~~l~~~ 158 (250)
....+++.++...
T Consensus 448 ~~~~~aDri~vl~ 460 (538)
T 3ozx_A 448 IHDYIADRIIVFK 460 (538)
T ss_dssp HHHHHCSEEEEEE
T ss_pred HHHHhCCEEEEEe
Confidence 7777777665543
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.85 E-value=6.4e-22 Score=173.34 Aligned_cols=129 Identities=19% Similarity=0.168 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~----------~~ 60 (250)
+++|+||||||||||+++|+|+++| +|+|.+.|.+... +.++| +|+ .++++++. +.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 126 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVI 126 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHHH
Confidence 5899999999999999999999987 8999999876521 23444 222 25666553 23
Q ss_pred HHHHHhCCCCC-----CCch-----hhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 61 DVMEELGLGPN-----GGLI-----YCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 61 ~vm~~~~L~~~-----g~~~-----~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
++++.+++... .+.. ...+.. .++++++||++|+. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 127 ~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~l~~ 203 (260)
T 2ghi_A 127 KATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK--DPKIVIFDEATSSLDSKTEYLFQ-KAVEDLRK 203 (260)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCCCTTCHHHHHHHH-HHHHHHTT
T ss_pred HHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHhcC
Confidence 44455554211 0000 000111 23345999999999 999999999999 9999999988 88888854
Q ss_pred CCCeEEEEE
Q 025642 129 RNFNVCAVY 137 (250)
Q Consensus 129 ~~~~vi~v~ 137 (250)
+.+++++.
T Consensus 204 -~~tviivt 211 (260)
T 2ghi_A 204 -NRTLIIIA 211 (260)
T ss_dssp -TSEEEEEC
T ss_pred -CCEEEEEc
Confidence 77776653
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.84 E-value=4.4e-22 Score=171.20 Aligned_cols=128 Identities=18% Similarity=0.128 Sum_probs=84.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC-ccCCCCCCcccChhhhhh---------HHHHHHHhCCCC---
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS---------LEDVMEELGLGP--- 70 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp-~~~~~~y~~~~~i~~~i~---------~~~vm~~~~L~~--- 70 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.-- ..+...+.+ .++++++. ..++++..++..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP-GTIKENIIFGVSYDEYRYRSVIKACQLEEDIS 114 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCS-BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccC-CCHHHHhhccCCcChHHHHHHHHHhCcHHHHH
Confidence 5799999999999999999999999999999976210 011111222 26666653 233444444321
Q ss_pred ---CCCch----hhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHH-HHHHHhCCCeEEEE
Q 025642 71 ---NGGLI----YCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAV 136 (250)
Q Consensus 71 ---~g~~~----~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~l-l~~l~~~~~~vi~v 136 (250)
.+... ...+.. .++++++||++++. +|+++|+||||+ ||+.++..++ +. ++++. .+.+++++
T Consensus 115 ~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~-~~~tvi~v 186 (229)
T 2pze_A 115 KFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILV 186 (229)
T ss_dssp TSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS--CCSEEEEESTTTTSCHHHHHHHH-HHCCCCCT-TTSEEEEE
T ss_pred hCcccccccccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECcccCCCHHHHHHHH-HHHHHHhh-CCCEEEEE
Confidence 10000 000111 23345999999999 999999999999 9999998888 54 44543 37777655
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.84 E-value=3e-21 Score=166.87 Aligned_cols=134 Identities=19% Similarity=0.201 Sum_probs=87.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC-ccCCCCCCcccChhhhhh---------HHHHHHHh------C
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS---------LEDVMEEL------G 67 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp-~~~~~~y~~~~~i~~~i~---------~~~vm~~~------~ 67 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.-- ..+.. ..+..++++++. .+++.+.+ +
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQA-WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLE 111 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSC-CCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCC-cCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHH
Confidence 5899999999999999999999999999999976210 01111 112345555543 22333333 3
Q ss_pred CCCCCCc----hhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH---HHHhCCCeEEEEEe
Q 025642 68 LGPNGGL----IYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD---HLKSRNFNVCAVYL 138 (250)
Q Consensus 68 L~~~g~~----~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~---~l~~~~~~vi~v~l 138 (250)
+.|.+.. ....+.. .++++++||++|+. +|+++|+||||+ ||+.++..++ +++. .++ +|.+++++
T Consensus 112 ~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~~~-~~~tviiv-- 185 (237)
T 2cbz_A 112 ILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIF-ENVIGPKGML-KNKTRILV-- 185 (237)
T ss_dssp TSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHTTSTTSTT-TTSEEEEE--
T ss_pred hccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHHhhc-CCCEEEEE--
Confidence 2221100 0001111 23345999999999 999999999999 9999999888 6663 333 47787665
Q ss_pred cccccccc
Q 025642 139 LDSQFITD 146 (250)
Q Consensus 139 ~d~~~~~d 146 (250)
+|....
T Consensus 186 --tH~~~~ 191 (237)
T 2cbz_A 186 --THSMSY 191 (237)
T ss_dssp --CSCSTT
T ss_pred --ecChHH
Confidence 355543
No 37
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.83 E-value=1.2e-20 Score=180.68 Aligned_cols=144 Identities=17% Similarity=0.106 Sum_probs=100.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceE---------EEeecCCc---------cCCCCC-Ccc---------cChhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------AENFDY-PVA---------MDIRE 55 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i---------~i~~~dp~---------~~~~~y-~~~---------~~i~~ 55 (250)
+++|+||||||||||+|+|+|+++|++|++ .+.|.+.. ...+.+ ++. .++.+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e 128 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIE 128 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHH
Confidence 589999999999999999999999999985 23333211 011111 110 13444
Q ss_pred hh-------hHHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 56 LI-------SLEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 56 ~i-------~~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
.+ .++++++.+|+....... ..+.. .++++++||++|+. +|++||+||||+ ||+.++..++ ++++++
T Consensus 129 ~~~~~~~~~~~~~~l~~lgl~~~~~~~-~~~LSgGekQRv~iAraL~~--~P~lLlLDEPTs~LD~~~~~~l~-~~L~~l 204 (538)
T 1yqt_A 129 LLKKADETGKLEEVVKALELENVLERE-IQHLSGGELQRVAIAAALLR--NATFYFFDEPSSYLDIRQRLNAA-RAIRRL 204 (538)
T ss_dssp HHHHHCSSSCHHHHHHHTTCTTTTTSB-GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHHHH
T ss_pred HHhhhhHHHHHHHHHHHcCCChhhhCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHH
Confidence 43 267899999997643211 11222 23445999999999 999999999999 9999999998 899999
Q ss_pred HhCCCeEEEEEeccccccccHHHHHHhhH
Q 025642 127 KSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 127 ~~~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
++.|.++++|. |.......+++.++
T Consensus 205 ~~~g~tvi~vs----Hd~~~~~~~~dri~ 229 (538)
T 1yqt_A 205 SEEGKSVLVVE----HDLAVLDYLSDIIH 229 (538)
T ss_dssp HHTTCEEEEEC----SCHHHHHHHCSEEE
T ss_pred HhcCCEEEEEe----CCHHHHHHhCCEEE
Confidence 77788887663 55555555555443
No 38
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.82 E-value=2.7e-20 Score=180.57 Aligned_cols=144 Identities=17% Similarity=0.174 Sum_probs=103.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEe---ecCCccCCCCCCcccChhhhhh------------HHHHHHHhCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV---NLDPAAENFDYPVAMDIRELIS------------LEDVMEELGL 68 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~---~~dp~~~~~~y~~~~~i~~~i~------------~~~vm~~~~L 68 (250)
+++|+||||||||||+++|+|+++|++|+|.+. +.-| ++....+..++.+.+. ++++++.+++
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~--Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEEC--SSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEe--cCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 589999999999999999999999999998751 1111 1111122334444332 4567888999
Q ss_pred CCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeEEEEEeccccccc
Q 025642 69 GPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFIT 145 (250)
Q Consensus 69 ~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~-~~~~~vi~v~l~d~~~~~ 145 (250)
.+...... .+.. .++++++||++|+. +|+++|+||||+ ||+.++..++ ++++++. +.|.++++| +|.+.
T Consensus 462 ~~~~~~~~-~~LSGGe~QRv~iAraL~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~v----sHd~~ 533 (607)
T 3bk7_A 462 IDLYDRNV-EDLSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV----EHDVL 533 (607)
T ss_dssp TTTTTSBG-GGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEE----CSCHH
T ss_pred chHhcCCh-hhCCHHHHHHHHHHHHHHh--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCHH
Confidence 75432211 1222 23445999999999 999999999999 9999999999 8899886 468888766 47776
Q ss_pred cHHHHHHhhHHh
Q 025642 146 DVTKFISGCMAS 157 (250)
Q Consensus 146 d~~~~~s~~l~~ 157 (250)
....+++.++..
T Consensus 534 ~~~~~adrv~vl 545 (607)
T 3bk7_A 534 MIDYVSDRLIVF 545 (607)
T ss_dssp HHHHHCSEEEEE
T ss_pred HHHHhCCEEEEE
Confidence 667777766554
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.82 E-value=1.2e-20 Score=182.10 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=92.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh-----------H
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS-----------L 59 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~-----------~ 59 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +|+ .+++|++. +
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 450 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQI 450 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHH
Confidence 579999999999999999999999999999999977521 23444 322 25666553 3
Q ss_pred HHHHHHhCCCCCC-----Cchhh-----hh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 60 EDVMEELGLGPNG-----GLIYC-----ME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 60 ~~vm~~~~L~~~g-----~~~~~-----~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+++++..++.+.. |.... .+ ...++++++|||++.. +|+++|+||||+ +|+.+...+. +.++++.
T Consensus 451 ~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 527 (582)
T 3b5x_A 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR--DAPVLILDEATSALDTESERAIQ-AALDELQ 527 (582)
T ss_pred HHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHc
Confidence 4455555543210 00000 01 1123455999999999 999999999999 9999999988 8888875
Q ss_pred hCCCeEEEEE
Q 025642 128 SRNFNVCAVY 137 (250)
Q Consensus 128 ~~~~~vi~v~ 137 (250)
+ |++++++.
T Consensus 528 ~-~~tvi~it 536 (582)
T 3b5x_A 528 K-NKTVLVIA 536 (582)
T ss_pred C-CCEEEEEe
Confidence 4 78876663
No 40
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.82 E-value=1.8e-20 Score=179.54 Aligned_cols=143 Identities=15% Similarity=0.093 Sum_probs=99.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceE-----------EEeecCCc-------cC------CCCCC---c---ccCh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTM-----------HIVNLDPA-------AE------NFDYP---V---AMDI 53 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i-----------~i~~~dp~-------~~------~~~y~---~---~~~i 53 (250)
+++|+||||||||||+|+|+|+++|++|+| .+.|.+.. .. .+.|. + ..++
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 106 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTV 106 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSBH
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhccCcH
Confidence 689999999999999999999999999998 34443321 00 11121 1 1133
Q ss_pred hhhhh-------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 54 RELIS-------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 54 ~~~i~-------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
++.+. ++++++.+++........ .+.. .++++++||++|+. +|+++||||||+ ||+.++..+. ++++
T Consensus 107 ~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~-~~LSgGe~Qrv~iA~aL~~--~p~illlDEPts~LD~~~~~~l~-~~l~ 182 (538)
T 3ozx_A 107 NEILTKIDERGKKDEVKELLNMTNLWNKDA-NILSGGGLQRLLVAASLLR--EADVYIFDQPSSYLDVRERMNMA-KAIR 182 (538)
T ss_dssp HHHHHHHCCSSCHHHHHHHTTCGGGTTSBG-GGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHH
T ss_pred HHHhhcchhHHHHHHHHHHcCCchhhcCCh-hhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHH
Confidence 44332 678899999865432111 1111 23445999999999 999999999999 9999999998 9999
Q ss_pred HHHhCCCeEEEEEeccccccccHHHHHHhhH
Q 025642 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 125 ~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
++++ |.++++| +|.+.....+++.+.
T Consensus 183 ~l~~-g~tii~v----sHdl~~~~~~~d~i~ 208 (538)
T 3ozx_A 183 ELLK-NKYVIVV----DHDLIVLDYLTDLIH 208 (538)
T ss_dssp HHCT-TSEEEEE----CSCHHHHHHHCSEEE
T ss_pred HHhC-CCEEEEE----EeChHHHHhhCCEEE
Confidence 9965 8888766 366555555555443
No 41
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.82 E-value=1.8e-20 Score=181.85 Aligned_cols=143 Identities=17% Similarity=0.150 Sum_probs=99.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceE---------EEeecCCc---------cCCCCC-Cc---------ccChhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------AENFDY-PV---------AMDIRE 55 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i---------~i~~~dp~---------~~~~~y-~~---------~~~i~~ 55 (250)
+++|+||||||||||+++|+|+++|++|++ .+.|.+.. ...+.+ ++ ..++.+
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e 198 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE 198 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHH
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHH
Confidence 589999999999999999999999999995 23343221 011111 11 114555
Q ss_pred hhh-------HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 56 LIS-------LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 56 ~i~-------~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
.+. ++++++.+|+....... ..+.. .++++++||++|+. +|++|||||||+ ||+.++..++ ++++++
T Consensus 199 ~l~~~~~~~~~~~~L~~lgL~~~~~~~-~~~LSGGekQRvaIAraL~~--~P~lLlLDEPTs~LD~~~~~~l~-~~L~~l 274 (607)
T 3bk7_A 199 LLKKVDEVGKFEEVVKELELENVLDRE-LHQLSGGELQRVAIAAALLR--KAHFYFFDEPSSYLDIRQRLKVA-RVIRRL 274 (607)
T ss_dssp HHHHTCCSSCHHHHHHHTTCTTGGGSB-GGGCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHH
T ss_pred HhhhhHHHHHHHHHHHHcCCCchhCCC-hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHH
Confidence 442 67899999997542111 11112 23345999999999 999999999999 9999999998 899999
Q ss_pred HhCCCeEEEEEeccccccccHHHHHHhh
Q 025642 127 KSRNFNVCAVYLLDSQFITDVTKFISGC 154 (250)
Q Consensus 127 ~~~~~~vi~v~l~d~~~~~d~~~~~s~~ 154 (250)
+++|.++++|. |.+.....+++.+
T Consensus 275 ~~~g~tvIivs----Hdl~~~~~~adri 298 (607)
T 3bk7_A 275 ANEGKAVLVVE----HDLAVLDYLSDVI 298 (607)
T ss_dssp HHTTCEEEEEC----SCHHHHHHHCSEE
T ss_pred HhcCCEEEEEe----cChHHHHhhCCEE
Confidence 77788887663 5444444444443
No 42
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.81 E-value=2.2e-20 Score=172.37 Aligned_cols=128 Identities=19% Similarity=0.178 Sum_probs=94.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh---------HHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LED 61 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~---------~~~ 61 (250)
+++|+||||||||||+++|+|+++ ++|+|.++|.+... +.++| +|+ .++++++. +.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~ 127 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWK 127 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHH
Confidence 579999999999999999999998 89999999987532 23333 221 35666654 567
Q ss_pred HHHHhCCCCCCCchhhhh------------hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 62 VMEELGLGPNGGLIYCME------------HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 62 vm~~~~L~~~g~~~~~~~------------~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
+++.+++....... ..+ ...++++++||++|+. +|+++|||||++ ||+..+..+. +.++++.
T Consensus 128 ~l~~~~L~~~~~~~-p~~l~~~i~~~g~~LSGGqrQRvalARAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~l~~~~- 202 (390)
T 3gd7_A 128 VADEVGLRSVIEQF-PGKLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPVTYQIIR-RTLKQAF- 202 (390)
T ss_dssp HHHHTTCHHHHTTS-TTGGGCEECTTTTTSCHHHHHHHHHHHHHHT--TCCEEEEESHHHHSCHHHHHHHH-HHHHTTT-
T ss_pred HHHHhCCHHHHhhc-ccccccccccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh-
Confidence 78888875421110 001 1123456999999999 999999999999 9999998888 7777653
Q ss_pred CCCeEEEEE
Q 025642 129 RNFNVCAVY 137 (250)
Q Consensus 129 ~~~~vi~v~ 137 (250)
.+.++++++
T Consensus 203 ~~~tvi~vt 211 (390)
T 3gd7_A 203 ADCTVILCE 211 (390)
T ss_dssp TTSCEEEEC
T ss_pred CCCEEEEEE
Confidence 467777664
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.81 E-value=2.7e-20 Score=178.34 Aligned_cols=145 Identities=18% Similarity=0.176 Sum_probs=100.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEe---ecCCccCCCCCCcccChhhhhh------------HHHHHHHhCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV---NLDPAAENFDYPVAMDIRELIS------------LEDVMEELGL 68 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~---~~dp~~~~~~y~~~~~i~~~i~------------~~~vm~~~~L 68 (250)
+++|+||||||||||+++|+|+++|++|+|.+. +.-| ++....+..++.+.+. ++++++.+++
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~--Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKP--QYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEEC--SSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEe--cCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 589999999999999999999999999998751 1111 1111122334444332 3445666777
Q ss_pred CCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeEEEEEeccccccc
Q 025642 69 GPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFIT 145 (250)
Q Consensus 69 ~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~-~~~~~vi~v~l~d~~~~~ 145 (250)
.+..... ..+... ++++++||++|+. +|++||+||||+ ||+.++..++ ++++++. +.|.++++| +|...
T Consensus 392 ~~~~~~~-~~~LSGGe~qrv~lAraL~~--~p~lLlLDEPt~~LD~~~~~~i~-~~l~~l~~~~g~tvi~v----sHd~~ 463 (538)
T 1yqt_A 392 IDLYDRE-VNELSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV----EHDVL 463 (538)
T ss_dssp GGGTTSB-GGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEE----CSCHH
T ss_pred hhhhcCC-hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCHH
Confidence 5432111 112222 3445999999999 999999999999 9999999999 8888886 458888766 47777
Q ss_pred cHHHHHHhhHHhh
Q 025642 146 DVTKFISGCMASL 158 (250)
Q Consensus 146 d~~~~~s~~l~~~ 158 (250)
....+++.++...
T Consensus 464 ~~~~~~drv~vl~ 476 (538)
T 1yqt_A 464 MIDYVSDRLMVFE 476 (538)
T ss_dssp HHHHHCSEEEEEE
T ss_pred HHHHhCCEEEEEe
Confidence 7777777665543
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.81 E-value=3.3e-20 Score=179.50 Aligned_cols=147 Identities=19% Similarity=0.184 Sum_probs=101.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~------------ 58 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| ..+++|++.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 451 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAE 451 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHH
Confidence 579999999999999999999999999999999977532 23334 22 225666552
Q ss_pred -HHHHHHHhCCCC------CCCchhh-----hh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 59 -LEDVMEELGLGP------NGGLIYC-----ME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 59 -~~~vm~~~~L~~------~g~~~~~-----~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
++++++..++.+ .| .... .+ ...++++++|||++.. +|+++|+||||+ ||+.+.+.+. +.++
T Consensus 452 ~~~~~~~~~~l~~~~~~l~~g-~~~~~~~~~~~LSgGq~qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~ 527 (595)
T 2yl4_A 452 EIQRVAEVANAVAFIRNFPQG-FNTVVGEKGVLLSGGQKQRIAIARALLK--NPKILLLDEATSALDAENEYLVQ-EALD 527 (595)
T ss_dssp HHHHHHHHTTCHHHHHTSSSG-GGCBCSSSSCCCCHHHHHHHHHHHHHHH--CCSEEEEECCCSSCCHHHHHHHH-HHHH
T ss_pred HHHHHHHHcCCHHHHHhCccc-ccccccCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECcccCCCHHHHHHHH-HHHH
Confidence 345566666421 11 0000 01 1123455999999999 999999999999 9999999988 8888
Q ss_pred HHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 125 ~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
++.+ +.+++++ +|..... ..++.++....+
T Consensus 528 ~~~~-~~tvi~i----tH~~~~~-~~~d~i~~l~~G 557 (595)
T 2yl4_A 528 RLMD-GRTVLVI----AHRLSTI-KNANMVAVLDQG 557 (595)
T ss_dssp HHHT-TSEEEEE----CCCHHHH-HHSSEEEEEETT
T ss_pred HHhc-CCEEEEE----ecCHHHH-HcCCEEEEEECC
Confidence 8865 7787665 3655433 234444443333
No 45
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.81 E-value=2.6e-20 Score=179.85 Aligned_cols=129 Identities=18% Similarity=0.165 Sum_probs=92.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh-----------H
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------L 59 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~-----------~ 59 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| ..+++|++. +
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 450 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI 450 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHH
Confidence 579999999999999999999999999999999977532 23444 22 125666553 3
Q ss_pred HHHHHHhCCCC------CC-----CchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 60 EDVMEELGLGP------NG-----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 60 ~~vm~~~~L~~------~g-----~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+++++..++.+ +| +.....-...++++++|||++.. +|+++|+||||+ +|+.+...+. +.++++.
T Consensus 451 ~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 527 (582)
T 3b60_A 451 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDELQ 527 (582)
T ss_dssp HHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH--CCSEEEEETTTSSCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHHHh
Confidence 44555555421 10 00000011123455999999999 999999999999 9999999988 8888886
Q ss_pred hCCCeEEEE
Q 025642 128 SRNFNVCAV 136 (250)
Q Consensus 128 ~~~~~vi~v 136 (250)
+ |++++++
T Consensus 528 ~-~~tvi~i 535 (582)
T 3b60_A 528 K-NRTSLVI 535 (582)
T ss_dssp T-TSEEEEE
T ss_pred C-CCEEEEE
Confidence 5 7887666
No 46
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.81 E-value=8e-20 Score=177.24 Aligned_cols=142 Identities=12% Similarity=0.052 Sum_probs=101.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceE------EEeecCCccCCCCCCcccChhhhh------------hHHHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTM------HIVNLDPAAENFDYPVAMDIRELI------------SLEDVMEE 65 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i------~i~~~dp~~~~~~y~~~~~i~~~i------------~~~~vm~~ 65 (250)
+++|+||||||||||+++|+|+++|++|+. .+..+++ ......++++.+ ..+++++.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~-----~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 454 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKI-----APKFPGTVRQLFFKKIRGQFLNPQFQTDVVKP 454 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSC-----CCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccc-----cccCCccHHHHHHHHhhcccccHHHHHHHHHH
Confidence 489999999999999999999999999962 2221111 111112333332 15678888
Q ss_pred hCCCCCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeEEEEEecccc
Q 025642 66 LGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQ 142 (250)
Q Consensus 66 ~~L~~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~-~~~~~vi~v~l~d~~ 142 (250)
+++.+...... .+.. .++++++||++|+. +|++||+||||+ ||+.++..++ ++++++. +.|.++++| +|
T Consensus 455 l~l~~~~~~~~-~~LSGGqkQRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~ll~~l~~~~g~tviiv----tH 526 (608)
T 3j16_B 455 LRIDDIIDQEV-QHLSGGELQRVAIVLALGI--PADIYLIDEPSAYLDSEQRIICS-KVIRRFILHNKKTAFIV----EH 526 (608)
T ss_dssp HTSTTTSSSBS-SSCCHHHHHHHHHHHHTTS--CCSEEEECCTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEE----CS
T ss_pred cCChhhhcCCh-hhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eC
Confidence 99876432211 1222 23455999999999 999999999999 9999999999 8898885 458888766 47
Q ss_pred ccccHHHHHHhhHHhh
Q 025642 143 FITDVTKFISGCMASL 158 (250)
Q Consensus 143 ~~~d~~~~~s~~l~~~ 158 (250)
.+.....+++.+++..
T Consensus 527 dl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 527 DFIMATYLADKVIVFE 542 (608)
T ss_dssp CHHHHHHHCSEEEECE
T ss_pred CHHHHHHhCCEEEEEe
Confidence 7777777777776544
No 47
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.80 E-value=2.7e-20 Score=179.63 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=91.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~ 60 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| +| +.+++|++. +.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 448 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVV 448 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHH
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHH
Confidence 579999999999999999999999999999999987532 23444 22 236777764 33
Q ss_pred HHHHHhCCC------CCC-----CchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025642 61 DVMEELGLG------PNG-----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (250)
Q Consensus 61 ~vm~~~~L~------~~g-----~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~ 128 (250)
++++..++. |.| +..-..-...++++++|||++.. +|+++|+||||+ +|+.+...+. +.++++.
T Consensus 449 ~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~- 524 (578)
T 4a82_A 449 EAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN--NPPILILDEATSALDLESESIIQ-EALDVLS- 524 (578)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHT-
T ss_pred HHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHc-
Confidence 444444432 111 00000011123456999999999 999999999999 9999998887 8888874
Q ss_pred CCCeEEEE
Q 025642 129 RNFNVCAV 136 (250)
Q Consensus 129 ~~~~vi~v 136 (250)
+++|++++
T Consensus 525 ~~~t~i~i 532 (578)
T 4a82_A 525 KDRTTLIV 532 (578)
T ss_dssp TTSEEEEE
T ss_pred CCCEEEEE
Confidence 46777655
No 48
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=2.6e-20 Score=180.44 Aligned_cols=134 Identities=13% Similarity=0.183 Sum_probs=94.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~ 60 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| +| +.+++|++. +.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~ 462 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIK 462 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHH
Confidence 589999999999999999999999999999999987632 12333 22 236777764 23
Q ss_pred HHHHHhCCC------CCCCchhh-----hh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 61 DVMEELGLG------PNGGLIYC-----ME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 61 ~vm~~~~L~------~~g~~~~~-----~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
++++..++. |.| .... .+ ...++++++|||++.. +|+++|+||||+ +|+.+...+. +.++++.
T Consensus 463 ~~~~~~~~~~~~~~~~~g-~~t~~~~~g~~LSgGq~Qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 538 (598)
T 3qf4_B 463 EAAKLTHSDHFIKHLPEG-YETVLTDNGEDLSQGQRQLLAITRAFLA--NPKILILDEATSNVDTKTEKSIQ-AAMWKLM 538 (598)
T ss_dssp HHTTTTTCHHHHHTSTTG-GGCBCHHHHTTSCHHHHHHHHHHHHHHT--CCSEEEECCCCTTCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHhCCHHHHHhcccc-ccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHHc
Confidence 333333321 111 0000 01 1123455999999999 999999999999 9999999998 8888875
Q ss_pred hCCCeEEEEEecccccccc
Q 025642 128 SRNFNVCAVYLLDSQFITD 146 (250)
Q Consensus 128 ~~~~~vi~v~l~d~~~~~d 146 (250)
+|+|+++| +|.+..
T Consensus 539 -~~~t~i~i----tH~l~~ 552 (598)
T 3qf4_B 539 -EGKTSIII----AHRLNT 552 (598)
T ss_dssp -TTSEEEEE----SCCTTH
T ss_pred -CCCEEEEE----ecCHHH
Confidence 57888766 466653
No 49
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.80 E-value=8.1e-19 Score=151.45 Aligned_cols=237 Identities=21% Similarity=0.385 Sum_probs=165.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
..++++.|..|+||||++..++..+. .+.++.+++.||+....++.+..++++..+.++++.+ ++++++..+.+.+..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDRL 91 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecHHHH
Confidence 46789999999999999999998887 6779999999998777777666677777778887766 677776555544333
Q ss_pred hhhHHHHHHHHHhcCC-CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 82 EDNLDDWLAEELDNYL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~-~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
.... .++.+.+.... +.+++|+|.||+.+......+...+.+.+ .. .++++++|+....++..+..........
T Consensus 92 ~~~~-~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~---~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~ 166 (262)
T 1yrb_A 92 MEKF-NEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL---PY-PLVVYISDPEILKKPNDYCFVRFFALLI 166 (262)
T ss_dssp HTTH-HHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTS---SS-CEEEEEECGGGCCSHHHHHHHHHHHHHH
T ss_pred hhhH-HHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHH---hh-ceEEeccchhhhcCHHHHHHHHHHHHHH
Confidence 3222 34443332210 45999999999987766544443444433 22 5567788988888888776554444444
Q ss_pred HhHhcCCeeeecCchhhhcchh--hhhhccCcCHHHHHHHhh-cccchhHHHHHHHHHHHHhhcCC-ceeEEeecCCHHH
Q 025642 161 MVQLELPHVNILSKMDLVTNKK--EIEDYLNPESQFLLSELN-QHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESR 236 (250)
Q Consensus 161 ~~~~~~p~v~vlsK~Dl~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~~~~~i~~~~~-~~f~~l~~~~~~~ 236 (250)
....+.|.+.|+||+|+.+... .++.++. +.+.+.+.+. ++...+|.++ ++++++++++. ..|+|++..+.+.
T Consensus 167 ~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~SA~~~~g 243 (262)
T 1yrb_A 167 DLRLGATTIPALNKVDLLSEEEKERHRKYFE-DIDYLTARLKLDPSMQGLMAY--KMCSMMTEVLPPVRVLYLSAKTREG 243 (262)
T ss_dssp HHHHTSCEEEEECCGGGCCHHHHHHHHHHHH-CHHHHHHHHHHCCSHHHHHHH--HHHHHHHHHSCCCCCEECCTTTCTT
T ss_pred hcccCCCeEEEEecccccccccHHHHHHHHh-ChHHHHHHHhccccccchhHh--HHHHHHHHhcCcccceEEEecCccc
Confidence 4567899999999999976431 1233222 2233333332 1233567775 88999999987 4899999999999
Q ss_pred HHHHHHHhhhhh
Q 025642 237 YFLYLSSMVWCL 248 (250)
Q Consensus 237 ~~~~~~~~~~~~ 248 (250)
+..++..+.+.+
T Consensus 244 i~~l~~~i~~~~ 255 (262)
T 1yrb_A 244 FEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 50
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=6.2e-20 Score=177.42 Aligned_cols=129 Identities=18% Similarity=0.208 Sum_probs=91.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~ 60 (250)
.++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| +| +.+++|++. +.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~ 450 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIV 450 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHH
Confidence 579999999999999999999999999999999987632 22344 22 225677664 22
Q ss_pred HHHHHhCCC------CCC-----Cchhhhh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025642 61 DVMEELGLG------PNG-----GLIYCME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (250)
Q Consensus 61 ~vm~~~~L~------~~g-----~~~~~~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~ 127 (250)
+..+..++. |.| +.. ..+ ...++++++|||++.. +|+++|+||||+ +|+.+...+. +.++++.
T Consensus 451 ~~~~~~~~~~~i~~l~~g~~~~~~~~-~~~LSgGqrQrv~lARal~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 526 (587)
T 3qf4_A 451 EAAKIAQIHDFIISLPEGYDSRVERG-GRNFSGGQKQRLSIARALVK--KPKVLILDDCTSSVDPITEKRIL-DGLKRYT 526 (587)
T ss_dssp HHHHHTTCHHHHHTSSSGGGCEECSS-SCSSCHHHHHHHHHHHHHHT--CCSEEEEESCCTTSCHHHHHHHH-HHHHHHS
T ss_pred HHHHHhCcHHHHHhcccchhhHhcCC-CCCcCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHhC
Confidence 333333321 111 000 001 1223456999999999 999999999999 9999999998 7778774
Q ss_pred hCCCeEEEEE
Q 025642 128 SRNFNVCAVY 137 (250)
Q Consensus 128 ~~~~~vi~v~ 137 (250)
+|+|+++|.
T Consensus 527 -~~~tvi~it 535 (587)
T 3qf4_A 527 -KGCTTFIIT 535 (587)
T ss_dssp -TTCEEEEEE
T ss_pred -CCCEEEEEe
Confidence 578877664
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.79 E-value=5.7e-20 Score=178.24 Aligned_cols=146 Identities=13% Similarity=0.078 Sum_probs=98.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEE-----------EeecCCc-------cCCC------CCCcc---------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPA-------AENF------DYPVA--------- 50 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~-----------i~~~dp~-------~~~~------~y~~~--------- 50 (250)
+++|+||||||||||+++|+|+++|++|+|. +.|.+.. .+.+ .|...
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPV 184 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSS
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchh
Confidence 6899999999999999999999999999972 2221110 0011 11000
Q ss_pred cChhhhh---------hHHHHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025642 51 MDIRELI---------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (250)
Q Consensus 51 ~~i~~~i---------~~~~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~ 120 (250)
..+.+.+ .++++++.+|+.........--...++++++||++|+. +|+++||||||+ ||+.++..+.
T Consensus 185 ~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~--~p~llllDEPts~LD~~~~~~l~- 261 (608)
T 3j16_B 185 QKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ--EADVYMFDEPSSYLDVKQRLNAA- 261 (608)
T ss_dssp SHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHHHH-
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh--CCCEEEEECcccCCCHHHHHHHH-
Confidence 0122211 26788999998754211111011123445999999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 121 ~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+++++++++|.++++| +|.+.....+++.++.
T Consensus 262 ~~l~~l~~~g~tvi~v----tHdl~~~~~~~drv~v 293 (608)
T 3j16_B 262 QIIRSLLAPTKYVICV----EHDLSVLDYLSDFVCI 293 (608)
T ss_dssp HHHHGGGTTTCEEEEE----CSCHHHHHHHCSEEEE
T ss_pred HHHHHHHhCCCEEEEE----eCCHHHHHHhCCEEEE
Confidence 9999998778888766 3666555555555443
No 52
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.79 E-value=2.5e-20 Score=165.81 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=86.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC-ccCCCCCCcccChhhhhh--------HHHHHHHhCCCCC---
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS--------LEDVMEELGLGPN--- 71 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp-~~~~~~y~~~~~i~~~i~--------~~~vm~~~~L~~~--- 71 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.-- ..+...+.+ .++++++. ..++++.+++...
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~ 144 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP-GTIKENIIGVSYDEYRYRSVIKACQLEEDISK 144 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCS-SBHHHHHHTTCCCHHHHHHHHHHTTCHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCc-ccHHHHhhCcccchHHHHHHHHHhChHHHHHh
Confidence 5799999999999999999999999999999876210 011111222 26666552 2233444443210
Q ss_pred -C-Cch-----hhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHH-HHHHHhCCCeEEEEEeccc
Q 025642 72 -G-GLI-----YCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAVYLLDS 141 (250)
Q Consensus 72 -g-~~~-----~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~l-l~~l~~~~~~vi~v~l~d~ 141 (250)
. +.. ...+.. .++++++||++|+. +|+++|+||||+ ||+.++..++ ++ +++++ .|.+++++ +
T Consensus 145 ~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~ll~~~~-~~~tviiv----t 216 (290)
T 2bbs_A 145 FAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILV----T 216 (290)
T ss_dssp STTGGGCBC----CCCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHCCCCCT-TTSEEEEE----C
T ss_pred ccccccchhcCccCcCCHHHHHHHHHHHHHHC--CCCEEEEECCcccCCHHHHHHHH-HHHHHHhh-CCCEEEEE----e
Confidence 0 000 000111 13345999999999 999999999999 9999998888 54 44443 47787665 3
Q ss_pred cccc
Q 025642 142 QFIT 145 (250)
Q Consensus 142 ~~~~ 145 (250)
|...
T Consensus 217 Hd~~ 220 (290)
T 2bbs_A 217 SKME 220 (290)
T ss_dssp CCHH
T ss_pred cCHH
Confidence 6554
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.72 E-value=2.4e-18 Score=179.16 Aligned_cols=134 Identities=14% Similarity=0.160 Sum_probs=94.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~------------ 58 (250)
.++|+||||||||||+++|.|+++|++|+|.++|.|... ..++| +| +.++++++.
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~ 1140 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE 1140 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHH
Confidence 579999999999999999999999999999999987632 33454 33 235677663
Q ss_pred HHHHHHHhCCC------CCCCchhh-----hh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025642 59 LEDVMEELGLG------PNGGLIYC-----ME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (250)
Q Consensus 59 ~~~vm~~~~L~------~~g~~~~~-----~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~ 125 (250)
+.+.+++.++. |.| .-.. .+ .-.++++++|||+|.. +|++||+||||+ +|+.+...+. +.+++
T Consensus 1141 i~~~~~~~~~~~~i~~l~~g-ldt~vge~G~~LSgGq~Qrv~iARal~~--~p~iLiLDEpTs~lD~~~~~~i~-~~l~~ 1216 (1284)
T 3g5u_A 1141 IVRAAKEANIHQFIDSLPDK-YNTRVGDKGTQLSGGQKQRIAIARALVR--QPHILLLDEATSALDTESEKVVQ-EALDK 1216 (1284)
T ss_dssp HHHHHHHHTCHHHHSSTTTG-GGCBCSTTSCSSCHHHHHHHHHHHHHHH--CCSSEEEESCSSSCCHHHHHHHH-HHHHH
T ss_pred HHHHHHHhCcHHHHHhCccc-cccccCCCCCccCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 23334443321 111 0000 01 1224456999999999 999999999999 9999998888 77777
Q ss_pred HHhCCCeEEEEEecccccccc
Q 025642 126 LKSRNFNVCAVYLLDSQFITD 146 (250)
Q Consensus 126 l~~~~~~vi~v~l~d~~~~~d 146 (250)
+ ..|.|+++|. |.+..
T Consensus 1217 ~-~~~~tvi~is----H~l~~ 1232 (1284)
T 3g5u_A 1217 A-REGRTCIVIA----HRLST 1232 (1284)
T ss_dssp H-SSSSCEEEEC----SCTTG
T ss_pred h-CCCCEEEEEe----cCHHH
Confidence 5 4588887663 55543
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.70 E-value=9.4e-18 Score=174.66 Aligned_cols=125 Identities=19% Similarity=0.213 Sum_probs=89.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~ 60 (250)
.++|+||||||||||+++|.|+++|++|+|.++|.|... +.++| +| .-++++++. +.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~ 497 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIE 497 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHH
Confidence 579999999999999999999999999999999977532 12333 22 236777764 22
Q ss_pred HHHHHhCC---------------CCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 61 DVMEELGL---------------GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 61 ~vm~~~~L---------------~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
++++..++ +..|.. -...++++++|||++.. +|+++|+||||+ ||+.+.+.+. +.++
T Consensus 498 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~----LSgGq~QriaiARal~~--~p~iliLDEpts~LD~~~~~~i~-~~l~ 570 (1284)
T 3g5u_A 498 KAVKEANAYDFIMKLPHQFDTLVGERGAQ----LSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEAVVQ-AALD 570 (1284)
T ss_dssp HHHHHTTCHHHHHHSTTGGGCCCSSSSCS----SCHHHHHHHHHHHHHHH--CCSEEEEESTTCSSCHHHHHHHH-HHHH
T ss_pred HHHHHhCcHHHHHhccccccccccCCCCc----cCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHH
Confidence 22322221 112210 11224456999999999 999999999999 9999988777 7777
Q ss_pred HHHhCCCeEEEE
Q 025642 125 HLKSRNFNVCAV 136 (250)
Q Consensus 125 ~l~~~~~~vi~v 136 (250)
.+. +|+|+++|
T Consensus 571 ~~~-~~~t~i~i 581 (1284)
T 3g5u_A 571 KAR-EGRTTIVI 581 (1284)
T ss_dssp HHH-TTSEEEEE
T ss_pred HHc-CCCEEEEE
Confidence 764 47887766
No 55
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.70 E-value=1.5e-18 Score=147.17 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=72.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeec--CC--ccCCCCC-CcccChhhhh-h-----------------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL--DP--AAENFDY-PVAMDIRELI-S-----------------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~--dp--~~~~~~y-~~~~~i~~~i-~-----------------~~ 60 (250)
+++|+||||||||||+++|+|+ +|++|+|..... .+ ....++| +++. ++.+ . ++
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--~enl~~~~~~~~~~~~~~~~~~~~~ 100 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL--NEKIDPYLRPLHDALRDMVEPEVIP 100 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------CTTTHHHHHHHTTTSCTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--HHHHHHHHHHHHHHHHHhccHHHHH
Confidence 5799999999999999999999 999999854211 11 2234666 3332 2222 1 12
Q ss_pred HHHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEE
Q 025642 61 DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVC 134 (250)
Q Consensus 61 ~vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi 134 (250)
++++. ++ .++++++||++|+. +|+++|+||||+- ++..+. ++++++ ++|.+++
T Consensus 101 ~~l~~-gl-------------Gq~qrv~lAraL~~--~p~lllLDEPts~---~~~~l~-~~l~~l-~~g~tii 153 (208)
T 3b85_A 101 KLMEA-GI-------------VEVAPLAYMRGRTL--NDAFVILDEAQNT---TPAQMK-MFLTRL-GFGSKMV 153 (208)
T ss_dssp HHHHT-TS-------------EEEEEGGGGTTCCB--CSEEEEECSGGGC---CHHHHH-HHHTTB-CTTCEEE
T ss_pred HHHHh-CC-------------chHHHHHHHHHHhc--CCCEEEEeCCccc---cHHHHH-HHHHHh-cCCCEEE
Confidence 22222 21 23344899999999 9999999999998 666666 777777 5688887
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.69 E-value=1.4e-16 Score=155.92 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=54.2
Q ss_pred HHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCCC--EEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 62 VMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 62 vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~~--~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+++.+|++......+..+... ++++++||++|+. +|+ +||+||||+ ||+.....++ +++++++++|.++++|.
T Consensus 185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~--~p~~~lLlLDEPtsgLD~~~~~~l~-~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHHTTCEEEEEC
T ss_pred HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhh--CCCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHcCCEEEEEe
Confidence 367777765321111112222 3445999999999 887 999999999 9999999999 99999987888987763
No 57
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.69 E-value=3.2e-17 Score=171.11 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Ccc-----cChhhhhh------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS------------ 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~~-----~~i~~~i~------------ 58 (250)
.++|+||+||||||++++|.|+++|++|+|.++|.|... ++++| +|+ -++|+++.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~e 1186 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQ 1186 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHH
T ss_pred EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHH
Confidence 479999999999999999999999999999999988743 34444 333 25777652
Q ss_pred HHHHHHHhCCC------CCCCchhh-----hh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025642 59 LEDVMEELGLG------PNGGLIYC-----ME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (250)
Q Consensus 59 ~~~vm~~~~L~------~~g~~~~~-----~~-~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~ 125 (250)
+.++++..++. |.| .-.. .+ ...++++.+||||+.. +|++|||||||+ +|..+.+.+. +.+++
T Consensus 1187 i~~Al~~a~l~~~I~~Lp~G-ldT~vge~G~~LSgGQrQriaiARAllr--~~~ILiLDEaTSaLD~~tE~~Iq-~~l~~ 1262 (1321)
T 4f4c_A 1187 VEEAARLANIHNFIAELPEG-FETRVGDRGTQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEKVVQ-EALDR 1262 (1321)
T ss_dssp HHHHHHHTTCHHHHHTSTTT-TCSEETTTSCSSCHHHHHHHHHHHHHHS--CCSEEEEESCCCSTTSHHHHHHH-HHHTT
T ss_pred HHHHHHHhCChHHHHcCcCC-CCCEecCCCcccCHHHHHHHHHHHHHHh--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence 44455554442 221 1000 01 1123456999999999 999999999999 9999997777 66665
Q ss_pred HHhCCCeEEEEEeccccccc
Q 025642 126 LKSRNFNVCAVYLLDSQFIT 145 (250)
Q Consensus 126 l~~~~~~vi~v~l~d~~~~~ 145 (250)
+ .+++|+++| +|.++
T Consensus 1263 ~-~~~~TvI~I----AHRLs 1277 (1321)
T 4f4c_A 1263 A-REGRTCIVI----AHRLN 1277 (1321)
T ss_dssp T-SSSSEEEEE----CSSSS
T ss_pred H-cCCCEEEEe----ccCHH
Confidence 4 347888766 46654
No 58
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.67 E-value=2.7e-16 Score=164.16 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=91.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------~~~~y-~~-----~~~i~~~i~----------~~ 60 (250)
.++|+||+||||||++++|.|+++|.+|+|.++|.|... ++++| +| +-+|+|++. +.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~ 525 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMV 525 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHH
T ss_pred EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHH
Confidence 478999999999999999999999999999999987632 23444 22 336777775 33
Q ss_pred HHHHHhCC---------------CCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025642 61 DVMEELGL---------------GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (250)
Q Consensus 61 ~vm~~~~L---------------~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~ 124 (250)
++++..++ |++|.. -.-.++++++||||+.. +|+++||||||+ +|..+.+.+. +.++
T Consensus 526 ~a~~~a~l~~~i~~lp~G~~T~vGe~G~~----LSGGQkQRiaiARAl~~--~~~IliLDE~tSaLD~~te~~i~-~~l~ 598 (1321)
T 4f4c_A 526 AACKMANAEKFIKTLPNGYNTLVGDRGTQ----LSGGQKQRIAIARALVR--NPKILLLDEATSALDAESEGIVQ-QALD 598 (1321)
T ss_dssp HHHHHTTCHHHHHHSTTTTSSEESSSSCC----CCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCTTTHHHHH-HHHH
T ss_pred HHHHHccchhHHHcCCCCCccEecCCCCC----CCHHHHHHHHHHHHHcc--CCCEEEEecccccCCHHHHHHHH-HHHH
Confidence 33333222 223311 12234566999999999 999999999999 9999987776 7777
Q ss_pred HHHhCCCeEEEE
Q 025642 125 HLKSRNFNVCAV 136 (250)
Q Consensus 125 ~l~~~~~~vi~v 136 (250)
++.+ |+|+++|
T Consensus 599 ~~~~-~~T~iii 609 (1321)
T 4f4c_A 599 KAAK-GRTTIII 609 (1321)
T ss_dssp HHHT-TSEEEEE
T ss_pred HHhC-CCEEEEE
Confidence 7754 6776655
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.65 E-value=4.4e-17 Score=164.51 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=55.1
Q ss_pred HHHHHHHhCCCCCC-Cchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025642 59 LEDVMEELGLGPNG-GLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (250)
Q Consensus 59 ~~~vm~~~~L~~~g-~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~ 135 (250)
++++++.+|+.+.. ......+... +++++.||+++.. +|++||+||||+ ||+.+...+. +.+ ++.+.+|++
T Consensus 880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~--~P~LLLLDEPT~gLD~~s~~~L~-~~L---~~~g~tVIi 953 (986)
T 2iw3_A 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQ--RPHLIVLDEPTNYLDRDSLGALS-KAL---KEFEGGVII 953 (986)
T ss_dssp HHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTT--CCSEEEEECGGGTCCHHHHHHHH-HHH---HSCSSEEEE
T ss_pred HHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHH-HHH---HHhCCEEEE
Confidence 56677888886320 0000111222 3345999999999 999999999999 9999887666 444 444667765
Q ss_pred EEeccccccccHHHHHHhhH
Q 025642 136 VYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 136 v~l~d~~~~~d~~~~~s~~l 155 (250)
+ +|.......+++.++
T Consensus 954 I----SHD~e~v~~l~DrVi 969 (986)
T 2iw3_A 954 I----THSAEFTKNLTEEVW 969 (986)
T ss_dssp E----CSCHHHHTTTCCEEE
T ss_pred E----ECCHHHHHHhCCEEE
Confidence 5 466554444544433
No 60
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.65 E-value=2.3e-17 Score=134.98 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHH----------------hHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELF----------------THVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 83 ~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~----------------~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+++++.||+++.. +|+++++|||++ +|+. .+..+. +++++++++|.+++++.
T Consensus 88 ~~qrv~iAral~~--~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~-~~l~~l~~~g~tvi~vt 156 (171)
T 4gp7_A 88 RKPLIEMAKDYHC--FPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMK-KSIKGLQREGFRYVYIL 156 (171)
T ss_dssp HHHHHHHHHHTTC--EEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHH-HHSTTHHHHTCSEEEEE
T ss_pred HHHHHHHHHHcCC--cEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhh-hhhhhHHhcCCcEEEEe
Confidence 3445899999999 999999999999 9999 446666 77777876688887664
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.62 E-value=6.7e-16 Score=155.94 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=85.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCC--C--CCceEEEeecCCccCCCCCCcccChhhhhh---------HHHHHHHhCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYR-HCE--T--VRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLG 69 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g-~l~--~--~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~---------~~~vm~~~~L~ 69 (250)
+++|+||||||||||+|+|+| .+. + ....+.+..+++ ....+..++.+++. ++++++.+|+.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~----~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDI----DGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT 538 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCC----CCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccc----cccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence 579999999999999999994 210 0 111122221111 01122344555442 56788899885
Q ss_pred CCCCchhhhhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccH
Q 025642 70 PNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV 147 (250)
Q Consensus 70 ~~g~~~~~~~~~-~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~ 147 (250)
......+..+.. .+++++.||++|+. +|++||+||||+ ||+.++..+. +++++ .|.+++++ +|.....
T Consensus 539 ~~~~~~~~~~LSGGqkQRvaLArAL~~--~P~lLLLDEPTs~LD~~~~~~l~-~~L~~---~g~tvIiv----SHdl~~l 608 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKMKLALARAVLR--NADILLLDEPTNHLDTVNVAWLV-NYLNT---CGITSITI----SHDSVFL 608 (986)
T ss_dssp HHHHHSBGGGCCHHHHHHHHHHHHHHT--TCSEEEEESTTTTCCHHHHHHHH-HHHHH---SCSEEEEE----CSCHHHH
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHh---CCCEEEEE----ECCHHHH
Confidence 210000011111 13345999999999 999999999999 9999998888 77766 47787666 3554444
Q ss_pred HHHHHhhHH
Q 025642 148 TKFISGCMA 156 (250)
Q Consensus 148 ~~~~s~~l~ 156 (250)
..+++.++.
T Consensus 609 ~~~adrii~ 617 (986)
T 2iw3_A 609 DNVCEYIIN 617 (986)
T ss_dssp HHHCSEEEE
T ss_pred HHhCCEEEE
Confidence 444444433
No 62
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.61 E-value=7.2e-17 Score=149.88 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCC----CCCcccChhhh-------hhHHHHHHHhCCCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENF----DYPVAMDIREL-------ISLEDVMEELGLGPN 71 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~----~y~~~~~i~~~-------i~~~~vm~~~~L~~~ 71 (250)
.+++|+||||||||||+|+|+|+.+|++|+|.+.|.+...... +..+.+++.|. ..++++++++++...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 4789999999999999999999999999999888765421110 11112222221 237889999988654
Q ss_pred CCchhhhhhh-hhhHHHHHHHHHhcC--------CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-----hCC---CeE
Q 025642 72 GGLIYCMEHL-EDNLDDWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-----SRN---FNV 133 (250)
Q Consensus 72 g~~~~~~~~~-~~~ls~~la~aL~~~--------~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~-----~~~---~~v 133 (250)
..... +..- .+++++.+|+++... ++|+++++|||++ +|+..+..++ ++++++. +.| .++
T Consensus 150 ~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~-~~l~~l~~~~l~~~g~~~~~i 227 (413)
T 1tq4_A 150 DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVL-QDIRLNCVNTFRENGIAEPPI 227 (413)
T ss_dssp SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHH-HHHHHHHHHHHHHTTCSSCCE
T ss_pred CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHH-HHHHHHHHHHHHhcCCCCCcE
Confidence 21111 1111 134558899988762 2688999999999 9999999988 7777773 333 233
Q ss_pred EEEEecccccccc--HHHHHHhhHH
Q 025642 134 CAVYLLDSQFITD--VTKFISGCMA 156 (250)
Q Consensus 134 i~v~l~d~~~~~d--~~~~~s~~l~ 156 (250)
.++++|...+ ..++++.+.-
T Consensus 228 ---iliSsh~l~~~~~e~L~d~I~~ 249 (413)
T 1tq4_A 228 ---FLLSNKNVCHYDFPVLMDKLIS 249 (413)
T ss_dssp ---EECCTTCTTSTTHHHHHHHHHH
T ss_pred ---EEEecCcCCccCHHHHHHHHHH
Confidence 2467777765 7777666543
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.7e-16 Score=149.25 Aligned_cols=121 Identities=15% Similarity=0.148 Sum_probs=76.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCc-e-EEEeecCCccCCCCC-Ccc---------cChhhhhh-------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR-T-MHIVNLDPAAENFDY-PVA---------MDIRELIS------------- 58 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~-i~i~~~dp~~~~~~y-~~~---------~~i~~~i~------------- 58 (250)
+++|+||||||||||+|+|+|+++|++| + |.+++ ++. +.+.| +++ .++++.+.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~-~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~ 217 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQ-QPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHN 217 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTT-SCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-Ccc-CCeeeeccchhhcccccccchhhhhcccccccCcchHHH
Confidence 4789999999999999999999999999 8 88877 442 33433 222 23333220
Q ss_pred HHHHHHHhCCCCCCCchhhhhhh-hhhHHHHHHHH--HhcCCCCCE----EEEeC-CCc-cCHHhHHHHHHHHHHHHHhC
Q 025642 59 LEDVMEELGLGPNGGLIYCMEHL-EDNLDDWLAEE--LDNYLDDDY----LVFDC-PGQ-IELFTHVPVLRNFVDHLKSR 129 (250)
Q Consensus 59 ~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~la~a--L~~~~~~~~----lllDE-Pt~-LD~~~~~~i~~~ll~~l~~~ 129 (250)
+.++++.+|+..... ..+.. .+++++++|++ |+. +|++ +|+|| |++ +|+. ...+. +++++ .
T Consensus 218 ~~~ll~~~gl~~~~~---~~~LSgGq~qrlalAra~rL~~--~p~i~~sGLlLDEpPts~LD~~-~~~l~-~l~~~---~ 287 (460)
T 2npi_A 218 KQPMVKNFGLERINE---NKDLYLECISQLGQVVGQRLHL--DPQVRRSGCIVDTPSISQLDEN-LAELH-HIIEK---L 287 (460)
T ss_dssp BCCEECCCCSSSGGG---CHHHHHHHHHHHHHHHHHHHHH--CHHHHHSCEEEECCCGGGSCSS-CHHHH-HHHHH---T
T ss_pred HHHHHHHhCCCcccc---hhhhhHHHHHHHHHHHHHHhcc--CcccCcceEEEeCCcccccChh-HHHHH-HHHHH---h
Confidence 112233344432211 01111 12344899999 999 9999 99999 999 9998 32222 44433 3
Q ss_pred CCeEEEE
Q 025642 130 NFNVCAV 136 (250)
Q Consensus 130 ~~~vi~v 136 (250)
+.++++|
T Consensus 288 ~~tviiV 294 (460)
T 2npi_A 288 NVNIMLV 294 (460)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 6666555
No 64
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.57 E-value=1.3e-14 Score=142.11 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=54.8
Q ss_pred HHHHHHHhCCCCCCCchhhhhhhh-hhHHHHHHHHHhcCCCC---CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025642 59 LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (250)
Q Consensus 59 ~~~vm~~~~L~~~g~~~~~~~~~~-~~ls~~la~aL~~~~~~---~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~v 133 (250)
..+.+++++++......+..+... ++++++||++|+. +| ++||+||||+ ||+.+...++ +++++++++|.+|
T Consensus 523 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~--~p~~p~llllDEPt~~LD~~~~~~i~-~~l~~l~~~g~tv 599 (670)
T 3ux8_A 523 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGDTV 599 (670)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHS--CCCSCEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCEE
T ss_pred HHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhh--CCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEE
Confidence 345667777764211111112222 3455999999998 65 5999999999 9999999999 9999998778898
Q ss_pred EEEE
Q 025642 134 CAVY 137 (250)
Q Consensus 134 i~v~ 137 (250)
++|.
T Consensus 600 i~vt 603 (670)
T 3ux8_A 600 LVIE 603 (670)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7663
No 65
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.57 E-value=2.1e-15 Score=124.64 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=72.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC-------ccCCCCC-CcccChhhhhhHHHHHHHhCCCCCCC-c
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-------AAENFDY-PVAMDIRELISLEDVMEELGLGPNGG-L 74 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp-------~~~~~~y-~~~~~i~~~i~~~~vm~~~~L~~~g~-~ 74 (250)
.++|+||||||||||+++|+|++. +.+.|.++ ....++| +++.+..+.+ +..++..+... .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~-----~~~~~~~~~~~~~ 71 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI-----FSSKFFTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEE-----EEETTCCCSSEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHH-----HHhhcCCcccccc
Confidence 478999999999999999999985 33444332 1123344 2222221111 11112111000 0
Q ss_pred hhhhhhh-hhhHHHHHHHH-----HhcCCCCCEEEEeC--CCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 025642 75 IYCMEHL-EDNLDDWLAEE-----LDNYLDDDYLVFDC--PGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (250)
Q Consensus 75 ~~~~~~~-~~~ls~~la~a-----L~~~~~~~~lllDE--Pt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~ 145 (250)
.+..+.. .+++++.+|++ +.. +|+++|+|| |++ +|+..+..+. ++++ +.+.+++++. +.+|...
T Consensus 72 ~~~~~lSgG~~qr~~la~aa~~~~l~~--~p~llilDEigp~~~ld~~~~~~l~-~~l~---~~~~~~i~~~-H~~h~~~ 144 (178)
T 1ye8_A 72 SYGVNVQYFEELAIPILERAYREAKKD--RRKVIIIDEIGKMELFSKKFRDLVR-QIMH---DPNVNVVATI-PIRDVHP 144 (178)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCCSTTGGGCHHHHHHHH-HHHT---CTTSEEEEEC-CSSCCSH
T ss_pred ccccCcCHHHHHHHHHHhhcccccccc--CCCEEEEeCCCCcccCCHHHHHHHH-HHHh---cCCCeEEEEE-ccCCCch
Confidence 0000111 12344889996 888 999999999 999 9999886666 5443 3455454442 3455554
Q ss_pred cHHHH
Q 025642 146 DVTKF 150 (250)
Q Consensus 146 d~~~~ 150 (250)
....+
T Consensus 145 ~~~~i 149 (178)
T 1ye8_A 145 LVKEI 149 (178)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 66
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.52 E-value=4.5e-14 Score=123.49 Aligned_cols=117 Identities=20% Similarity=0.170 Sum_probs=77.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
.++|+|||||||||++++|+|+++|+ +|+|.+.|.+... + ++... ..+.- +++|+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~--~--~~~~~--~~v~q----~~~gl~~------------ 84 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY--V--FKHKK--SIVNQ----REVGEDT------------ 84 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCS--C--CCCSS--SEEEE----EEBTTTB------------
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCccee--e--cCCcc--eeeeH----HHhCCCH------------
Confidence 57999999999999999999999997 9999998865421 0 11100 00000 1233322
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 83 ~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
..++..|+++|.. +|+++++|||+ |+.+...+ ++.. +.|.+++++. |... ...+++.++.
T Consensus 85 ~~l~~~la~aL~~--~p~illlDEp~--D~~~~~~~----l~~~-~~g~~vl~t~----H~~~-~~~~~dri~~ 144 (261)
T 2eyu_A 85 KSFADALRAALRE--DPDVIFVGEMR--DLETVETA----LRAA-ETGHLVFGTL----HTNT-AIDTIHRIVD 144 (261)
T ss_dssp SCHHHHHHHHHHH--CCSEEEESCCC--SHHHHHHH----HHHH-HTTCEEEEEE----CCSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CCCEEEeCCCC--CHHHHHHH----HHHH-ccCCEEEEEe----Ccch-HHHHHHHHhh
Confidence 2346899999999 99999999999 77765433 3433 4577776553 4322 4555565544
No 67
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.51 E-value=3e-15 Score=145.30 Aligned_cols=157 Identities=17% Similarity=0.095 Sum_probs=84.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC-CCceEEEeecCC----------ccCCCCC-Cccc------ChhhhhhHHHHHHHh
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDP----------AAENFDY-PVAM------DIRELISLEDVMEEL 66 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~dp----------~~~~~~y-~~~~------~i~~~i~~~~vm~~~ 66 (250)
++|+||||||||||+++|+|+..| ++|.|.+.|.+. ....++| +++. ++++.+. .....+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~--~~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEIN--KAQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHH--HHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHH--HHHHHh
Confidence 799999999999999999999988 799999888663 1123444 2322 2333322 222222
Q ss_pred CCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCC------Cc-cCHHhHHHHHHHHHHHHHhCCCeE-EEEEe
Q 025642 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP------GQ-IELFTHVPVLRNFVDHLKSRNFNV-CAVYL 138 (250)
Q Consensus 67 ~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEP------t~-LD~~~~~~i~~~ll~~l~~~~~~v-i~v~l 138 (250)
+....+.. ... ..++.+... .|+++++||| ++ +|+.....+. ++++++.+.+.++ +++.
T Consensus 126 ~~~~~~~s--------~~~-i~l~i~~~~--~p~LlLlDePGi~~~~t~~LD~~~~~~i~-~li~~~l~~~~~iil~vv- 192 (608)
T 3szr_A 126 AGEGMGIS--------HEL-ITLEISSRD--VPDLTLIDLPGITRVAVGNQPADIGYKIK-TLIKKYIQRQETISLVVV- 192 (608)
T ss_dssp HCSSSCCC--------SCC-EEEEEEESS--SCCEEEEECCC------CCSSCSHHHHHH-HHHHHHTTSSSCCEEEEE-
T ss_pred cCCccccc--------hHH-HHHHhcCCC--CCceeEeeCCCccccccCCCCHHHHHHHH-HHHHHHHhcCCCCceEEE-
Confidence 22111100 000 111112223 7999999999 88 9999998888 8888865443333 2222
Q ss_pred ccccccccHHHHHHhhHHhhhhHhHhcCCeeeecCchhhhcch
Q 025642 139 LDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (250)
Q Consensus 139 ~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK~Dl~~~~ 181 (250)
+|...-.... ++-.....-..+.+.+-|++|.|++.+.
T Consensus 193 --t~~~d~a~~~---~l~la~~v~~~g~rtI~VlTK~Dlv~~g 230 (608)
T 3szr_A 193 --PSNVDIATTE---ALSMAQEVDPEGDRTIGILTKPDLVDKG 230 (608)
T ss_dssp --ESSSCTTTCH---HHHHHHHHCSSCCSEEEEEECGGGSSSS
T ss_pred --eccchhccHH---HHHHHHHHhhcCCceEEEecchhhcCcc
Confidence 1222211111 1111222223467899999999999643
No 68
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.51 E-value=8.3e-14 Score=125.67 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=76.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~ 83 (250)
.++|+||||||||||+++|+|+++|++|.|.+.|.+. +..++. ++.+.+- .| +| .
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e----~~~~~~---~~~i~~~-----~g----gg---------~ 227 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE----IVFKHH---KNYTQLF-----FG----GN---------I 227 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC----CCCSSC---SSEEEEE-----CB----TT---------B
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec----cccccc---hhEEEEE-----eC----CC---------h
Confidence 4789999999999999999999999999999987541 111100 1100000 01 22 2
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhh
Q 025642 84 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~ 158 (250)
.+++.|+++|.. +|+++++|||++- ++. ++++.+...+.+++++. |..+ ....+++++...
T Consensus 228 ~~r~~la~aL~~--~p~ilildE~~~~------e~~-~~l~~~~~g~~tvi~t~----H~~~-~~~~~dri~~l~ 288 (330)
T 2pt7_A 228 TSADCLKSCLRM--RPDRIILGELRSS------EAY-DFYNVLCSGHKGTLTTL----HAGS-SEEAFIRLANMS 288 (330)
T ss_dssp CHHHHHHHHTTS--CCSEEEECCCCST------HHH-HHHHHHHTTCCCEEEEE----ECSS-HHHHHHHHHHHH
T ss_pred hHHHHHHHHhhh--CCCEEEEcCCChH------HHH-HHHHHHhcCCCEEEEEE----cccH-HHHHhhhheehh
Confidence 466899999998 9999999999982 234 66777754444554442 4433 555666655443
No 69
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.50 E-value=2.6e-14 Score=127.59 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------------CCCCC-CcccC-------hhhhhhHHH
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PVAMD-------IRELISLED 61 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------------~~~~y-~~~~~-------i~~~i~~~~ 61 (250)
-+++++|||||||||+++.|+|+++|++|+|.+.|.|+.. ..++| ++... +++.+....
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~ 180 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 180 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999988632 13444 33222 333332111
Q ss_pred -------HHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCC--EEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCC
Q 025642 62 -------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRN 130 (250)
Q Consensus 62 -------vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~--~lllDEPt~-LD~~~~~~i~~~ll~~l~-~~~ 130 (250)
+++..|+.+.. ...+..+. +++..+|+++.. +|+ ++++| ||+ +|+.... +.+. +.|
T Consensus 181 ~~~~d~~lldt~gl~~~~--~~~~~eLS-kqr~~iaral~~--~P~e~lLvLD-ptsglD~~~~~-------~~~~~~~g 247 (302)
T 3b9q_A 181 EEGYDVVLCDTSGRLHTN--YSLMEELI-ACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQA-------REFNEVVG 247 (302)
T ss_dssp HTTCSEEEECCCCCSSCC--HHHHHHHH-HHHHHHHTTSTT--CCSEEEEEEE-GGGGGGGHHHH-------HHHHHHTC
T ss_pred HcCCcchHHhcCCCCcch--hHHHHHHH-HHHHHHHHhhcc--CCCeeEEEEe-CCCCcCHHHHH-------HHHHHhcC
Confidence 11122222221 01112222 344889999988 999 99999 999 9988552 3344 347
Q ss_pred CeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeee
Q 025642 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (250)
Q Consensus 131 ~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~v 171 (250)
.+++++..+|... ... ...+.....+.|..-+
T Consensus 248 ~t~iiiThlD~~~--~~g-------~~l~~~~~~~~pi~~i 279 (302)
T 3b9q_A 248 ITGLILTKLDGSA--RGG-------CVVSVVEELGIPVKFI 279 (302)
T ss_dssp CCEEEEECCSSCS--CTH-------HHHHHHHHHCCCEEEE
T ss_pred CCEEEEeCCCCCC--ccC-------hheehHHHHCCCEEEE
Confidence 7766654345421 111 2234445667777644
No 70
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.48 E-value=1e-14 Score=145.73 Aligned_cols=75 Identities=24% Similarity=0.156 Sum_probs=56.8
Q ss_pred HHHHHHHhCCCCCC-Cchhhhhhh-hhhHHHHHHHHHhcCCC---CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025642 59 LEDVMEELGLGPNG-GLIYCMEHL-EDNLDDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (250)
Q Consensus 59 ~~~vm~~~~L~~~g-~~~~~~~~~-~~~ls~~la~aL~~~~~---~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~ 132 (250)
+.++++++||+... +... .... .+++++.||++|+. + |+++||||||+ ||+.....++ ++++++++.|.+
T Consensus 710 ~~~~L~~~gL~~~~l~~~~-~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~t 785 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQPA-TELSGGEAQRIKLATELRR--SGRGGTVYVLDEPTTGLHPADVERLQ-RQLVKLVDAGNT 785 (842)
T ss_dssp HHHHHHHTTCTTSBTTCCG-GGCCHHHHHHHHHHHTTSS--CCSSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred HHHHHHHcCCCcccccCCc-ccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE
Confidence 45678889997631 2211 1222 23455999999998 6 69999999999 9999999999 999999888889
Q ss_pred EEEEE
Q 025642 133 VCAVY 137 (250)
Q Consensus 133 vi~v~ 137 (250)
|++|.
T Consensus 786 VIvis 790 (842)
T 2vf7_A 786 VIAVE 790 (842)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 87663
No 71
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.48 E-value=1.5e-13 Score=125.39 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------------CCCCC-CcccC-------hhhhhhHHH
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PVAMD-------IRELISLED 61 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------------~~~~y-~~~~~-------i~~~i~~~~ 61 (250)
.+++++|||||||||+++.|+|+++|++|+|.+.+.|+.. ..++| ++... +++.+....
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~ 237 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 237 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHH
Confidence 5789999999999999999999999999999999988632 13444 33222 333332110
Q ss_pred -------HHHHhCCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCC--EEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCC
Q 025642 62 -------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRN 130 (250)
Q Consensus 62 -------vm~~~~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~--~lllDEPt~-LD~~~~~~i~~~ll~~l~-~~~ 130 (250)
+++..|+.+.. ...+..+. +++..||+++.. +|+ ++++| ||+ +|+..+. +.+. +.|
T Consensus 238 ~~~~d~~lldt~Gl~~~~--~~~~~eLS-kqr~~iaral~~--~P~e~lLvLD-pttglD~~~~~-------~~~~~~~g 304 (359)
T 2og2_A 238 EEGYDVVLCDTSGRLHTN--YSLMEELI-ACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQA-------REFNEVVG 304 (359)
T ss_dssp HTTCSEEEEECCCCSSCC--HHHHHHHH-HHHHHHHHHSTT--CCSEEEEEEE-GGGGGGGHHHH-------HHHHHHTC
T ss_pred hCCCHHHHHHhcCCChhh--hhHHHHHH-HHHHHHHHHHhc--CCCceEEEEc-CCCCCCHHHHH-------HHHHHhcC
Confidence 11122332221 01112222 344899999998 999 99999 999 9988653 2333 347
Q ss_pred CeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeec
Q 025642 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (250)
Q Consensus 131 ~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vl 172 (250)
.+++++..+|... ... ..++.....+.|..-+-
T Consensus 305 ~t~iiiThlD~~~--~gG-------~~lsi~~~~~~pI~~ig 337 (359)
T 2og2_A 305 ITGLILTKLDGSA--RGG-------CVVSVVEELGIPVKFIG 337 (359)
T ss_dssp CCEEEEESCTTCS--CTH-------HHHHHHHHHCCCEEEEE
T ss_pred CeEEEEecCcccc--ccc-------HHHHHHHHhCCCEEEEe
Confidence 7766654345321 111 22344556677876543
No 72
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.48 E-value=2.2e-14 Score=122.17 Aligned_cols=124 Identities=16% Similarity=0.131 Sum_probs=67.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH--cCCCCCCceEEEeecCCcc------CCCCCCc-c------cChhhhhhHHHHH---HH
Q 025642 4 AQLVIGPAGSGKSTYCSSLY--RHCETVRRTMHIVNLDPAA------ENFDYPV-A------MDIRELISLEDVM---EE 65 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~--g~l~~~~G~i~i~~~dp~~------~~~~y~~-~------~~i~~~i~~~~vm---~~ 65 (250)
+++|+||||||||||++.++ |..++.+|.+++.+.++.. +.+++.+ . ..+.+........ +.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEK 111 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------------
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccccccc
Confidence 58999999999999999999 6646667777776655421 2233311 1 1111111100000 00
Q ss_pred h-CCCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cC----HHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 66 L-GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IE----LFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 66 ~-~L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD----~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+ .+.+. . ...+...+...+... +|+++++|||++ +| +...+..+.++++.+++.|.+++++.
T Consensus 112 ~~~~~~~--------~-~~~~~~~~~~~l~~~-~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vt 179 (251)
T 2ehv_A 112 FVLEDRF--------N-VDNFLRYIYRVVKAI-NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTT 179 (251)
T ss_dssp ------C--------C-HHHHHHHHHHHHHHT-TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred eeccCcc--------c-HHHHHHHHHHHHHhh-CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 0 00000 0 111112223333222 899999999999 85 34444434389999987799887664
No 73
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.46 E-value=1.1e-13 Score=127.32 Aligned_cols=50 Identities=20% Similarity=0.038 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhcCCCC--CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 84 NLDDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~--~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+.++.||++++. +| ++||||||++ ||+.+...+. ++++++. +|.+|++|.
T Consensus 301 ~qrl~lA~~l~~--~~~~~~LlLDEpt~~LD~~~~~~l~-~~L~~l~-~~~~vi~it 353 (415)
T 4aby_A 301 LSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLA-DTRQVLVVT 353 (415)
T ss_dssp HHHHHHHHHHHH--CCSSSEEEESSTTTTCCHHHHHHHH-HHHHHHT-TTSEEEEEC
T ss_pred HHHHHHHHHHHh--CCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHh-CCCEEEEEe
Confidence 344899999998 99 9999999999 9999999999 8899886 578887663
No 74
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.44 E-value=2.3e-13 Score=137.01 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=54.8
Q ss_pred HHHHHHHhCCCCCC-CchhhhhhhhhhHHHHHHHHHhcC-CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025642 59 LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (250)
Q Consensus 59 ~~~vm~~~~L~~~g-~~~~~~~~~~~~ls~~la~aL~~~-~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~ 135 (250)
..++++.+||+... ++...--.-.+++++.||++|+.. .+|+++||||||+ ||+.....++ ++++++.+.|.||++
T Consensus 785 ~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~-~lL~~L~~~G~TVIv 863 (916)
T 3pih_A 785 TLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLV-EVLHRLVDRGNTVIV 863 (916)
T ss_dssp HHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEE
Confidence 45677788886421 111011112244569999999871 1347999999999 9999999999 999999878889876
Q ss_pred E
Q 025642 136 V 136 (250)
Q Consensus 136 v 136 (250)
|
T Consensus 864 I 864 (916)
T 3pih_A 864 I 864 (916)
T ss_dssp E
T ss_pred E
Confidence 6
No 75
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.43 E-value=2.2e-15 Score=126.50 Aligned_cols=58 Identities=5% Similarity=-0.050 Sum_probs=44.5
Q ss_pred HHhcCCCCCEEEEeCCCc-c----CHHhHHHHHHHHHHHHHh-CCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 92 ELDNYLDDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 92 aL~~~~~~~~lllDEPt~-L----D~~~~~~i~~~ll~~l~~-~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
+++. +|+++++|||++ + |+..+..+. ++++++++ .|.+++++ +|.+.+...+++.++.
T Consensus 137 ~l~~--~p~~~~LDep~~~l~~~~d~~~~~~l~-~~l~~l~~~~g~tvi~v----tHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 137 VFLA--PPSWQDLQARLIGRGTETADVIQRRLD-TARIELAAQGDFDKVVV----NRRLESACAELVSLLV 200 (207)
T ss_dssp EEEE--CSCHHHHHHHHHTTSCSCHHHHHHHHH-HHHHHHHGGGGSSEEEE----CSSHHHHHHHHHHHHC
T ss_pred EEEE--CCCHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhhhccCcEEEE----CCCHHHHHHHHHHHHH
Confidence 4455 789999999988 7 677787877 88888874 47888655 4888888888877665
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.40 E-value=6.6e-14 Score=122.97 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
.|.++|+||||||||||+++|+|...|++|+|.+.|.+.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i 40 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKI 40 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------C
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCccc
Confidence 478999999999999999999999999999999988764
No 77
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.38 E-value=2.2e-12 Score=129.87 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=55.6
Q ss_pred HHHHHHhCCCC-CCCchhhhhhh-hhhHHHHHHHHHhcCCC---CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025642 60 EDVMEELGLGP-NGGLIYCMEHL-EDNLDDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (250)
Q Consensus 60 ~~vm~~~~L~~-~g~~~~~~~~~-~~~ls~~la~aL~~~~~---~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~v 133 (250)
.++++++||+. ..+... .... .+++++.||++|+. + |+++||||||+ ||+..+..++ ++++++++.|.+|
T Consensus 826 ~~~L~~~gL~~~~l~~~~-~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~TV 901 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPA-TTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGDTV 901 (972)
T ss_dssp HHHHHHTTCSSSBTTCCG-GGCCHHHHHHHHHHHHHSS--CCCSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCEE
T ss_pred HHHHHHcCCCcccccCch-hhCCHHHHHHHHHHHHHhc--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEE
Confidence 56788899876 222211 1122 23455999999997 5 59999999999 9999999999 8999998788888
Q ss_pred EEEE
Q 025642 134 CAVY 137 (250)
Q Consensus 134 i~v~ 137 (250)
+++.
T Consensus 902 Ivis 905 (972)
T 2r6f_A 902 LVIE 905 (972)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7663
No 78
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.38 E-value=3.8e-13 Score=113.00 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-------CCceEEEeecC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-------VRRTMHIVNLD 39 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-------~~G~i~i~~~d 39 (250)
+++|+||||||||||++.|+|...+ .+|.+++.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 6899999999999999999996555 34466666544
No 79
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.38 E-value=1.1e-12 Score=119.58 Aligned_cols=118 Identities=18% Similarity=0.191 Sum_probs=71.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
.++|+|||||||||+++++.|++++. +|.|. ...||...... ..... +. +...+.. .
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~-t~ed~~e~~~~--~~~~~---v~------q~~~~~~----------~ 182 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHIL-TIEDPIEFVHE--SKKCL---VN------QREVHRD----------T 182 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCC--CSSSE---EE------EEEBTTT----------B
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEE-EccCcHHhhhh--ccccc---ee------eeeeccc----------c
Confidence 58999999999999999999999987 45554 44455321111 00000 00 0001111 0
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 83 ~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
..+...|+++|.. +|+++++|||+ |..+ + +.+.++.+.|.+++++. |... ....+++++..
T Consensus 183 ~~~~~~La~aL~~--~PdvillDEp~--d~e~----~-~~~~~~~~~G~~vl~t~----H~~~-~~~~~dRli~l 243 (356)
T 3jvv_A 183 LGFSEALRSALRE--DPDIILVGEMR--DLET----I-RLALTAAETGHLVFGTL----HTTS-AAKTIDRVVDV 243 (356)
T ss_dssp SCHHHHHHHHTTS--CCSEEEESCCC--SHHH----H-HHHHHHHHTTCEEEEEE----SCSS-HHHHHHHHHHT
T ss_pred CCHHHHHHHHhhh--CcCEEecCCCC--CHHH----H-HHHHHHHhcCCEEEEEE----ccCh-HHHHHHHHhhh
Confidence 1233689999999 99999999999 4433 3 33334456688876553 4333 23556665544
No 80
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.37 E-value=2.4e-12 Score=129.94 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=54.8
Q ss_pred HHHHHHhCCCC-CCCchhhhhhh-hhhHHHHHHHHHhcCCC---CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025642 60 EDVMEELGLGP-NGGLIYCMEHL-EDNLDDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (250)
Q Consensus 60 ~~vm~~~~L~~-~g~~~~~~~~~-~~~ls~~la~aL~~~~~---~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~v 133 (250)
.++++.+||+. ..+... .... .+++++.||++|+. + |+++||||||+ ||+.....++ ++++++++.|.+|
T Consensus 844 ~~~L~~lgL~~~~l~~~~-~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~TV 919 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQPA-PTLSGGEAQRVKLASELQK--RSTGRTVYILDEPTTGLHFDDIRKLL-NVINGLVDKGNTV 919 (993)
T ss_dssp HHHHHHTTGGGSBTTCCG-GGSCHHHHHHHHHHHHHSS--CCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCEE
T ss_pred HHHHHHcCCCcccccCcc-ccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEE
Confidence 46778888865 222211 1112 23445999999997 5 59999999999 9999999999 8999998788888
Q ss_pred EEEE
Q 025642 134 CAVY 137 (250)
Q Consensus 134 i~v~ 137 (250)
+++.
T Consensus 920 Ivis 923 (993)
T 2ygr_A 920 IVIE 923 (993)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7663
No 81
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.34 E-value=2.5e-12 Score=103.04 Aligned_cols=100 Identities=11% Similarity=0.076 Sum_probs=67.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCc--eEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
.++|+||||||||||++++++.+.+. | .+++.+.+....
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~~~~~~~~~~~~~-------------------------------------- 78 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEA-GKNAAYIDAASMPLT-------------------------------------- 78 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTT-TCCEEEEETTTSCCC--------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEcHHHhhHH--------------------------------------
Confidence 57899999999999999999988774 5 444443321110
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCe-EEEEEeccccccccHHHHHHhhH
Q 025642 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN-VCAVYLLDSQFITDVTKFISGCM 155 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~-vi~v~l~d~~~~~d~~~~~s~~l 155 (250)
++.. +++++++|||+.++...+..++ ++++.+.+.|.+ +++++-.....+....++.|++.
T Consensus 79 ----------~~~~--~~~lLilDE~~~~~~~~~~~l~-~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 79 ----------DAAF--EAEYLAVDQVEKLGNEEQALLF-SIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp ----------GGGG--GCSEEEEESTTCCCSHHHHHHH-HHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred ----------HHHh--CCCEEEEeCccccChHHHHHHH-HHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence 1234 7899999999997766666666 888888766776 65554333333333356666543
No 82
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.33 E-value=2.6e-12 Score=107.61 Aligned_cols=125 Identities=14% Similarity=0.212 Sum_probs=69.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccC-------CCCCC-cccChhhhhhHHHHHHHhCCCCCCCch
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDYP-VAMDIRELISLEDVMEELGLGPNGGLI 75 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~-------~~~y~-~~~~i~~~i~~~~vm~~~~L~~~g~~~ 75 (250)
+++|+||||||||||++.+++...+.+|+|.+.+.+...+ .+++. +...-.....++.....++ +.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---- 98 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKE--DQ---- 98 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC------CT----
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccC--ce----
Confidence 5789999999999999999998888888998887654211 01110 0000000000000000000 00
Q ss_pred hhhhh-hhhhHHHHHHH-HHhcCCCCC--EEEEeCCCc-c--CHHhHHHHHHHHHHHHH-hCCCeEEEEE
Q 025642 76 YCMEH-LEDNLDDWLAE-ELDNYLDDD--YLVFDCPGQ-I--ELFTHVPVLRNFVDHLK-SRNFNVCAVY 137 (250)
Q Consensus 76 ~~~~~-~~~~ls~~la~-aL~~~~~~~--~lllDEPt~-L--D~~~~~~i~~~ll~~l~-~~~~~vi~v~ 137 (250)
+..+. ....+...+.. .... +|+ ++++|||++ + |+.....++ +.++++. +.|.+++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDe~~~~~~~d~~~~~~~~-~~l~~~~~~~~~~vi~~~ 165 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKL--GYGKARLVIDSVSALFLDKPAMARKIS-YYLKRVLNKWNFTIYATS 165 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHH--CSSCEEEEEETGGGGSSSCGGGHHHHH-HHHHHHHHHTTEEEEEEE
T ss_pred eeecCCCHHHHHHHHHHHHHhh--CCCceEEEEECchHhhcCCHHHHHHHH-HHHHHHHHhCCCeEEEEe
Confidence 00000 11122122222 2234 899 999999998 6 988888888 6666664 4588877664
No 83
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.32 E-value=1.1e-11 Score=110.86 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=39.4
Q ss_pred HHHHHHHHhc--CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 86 DDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 86 s~~la~aL~~--~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
+++||++++. ..+|+++|+|||++ ||+.....+. ++++++. .+.+++++
T Consensus 227 ~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~-~~~~vi~~ 278 (322)
T 1e69_A 227 LVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFK-RLLKENS-KHTQFIVI 278 (322)
T ss_dssp HHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHH-HHHHHHT-TTSEEEEE
T ss_pred HHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc-CCCeEEEE
Confidence 3889998862 11789999999999 9999999988 8888884 46777655
No 84
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.32 E-value=5.1e-12 Score=112.77 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=84.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-------------CCCCC-Cccc------ChhhhhhHHHH
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PVAM------DIRELISLEDV 62 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-------------~~~~y-~~~~------~i~~~i~~~~v 62 (250)
-+++|+|||||||||+++.|+|+++|++|+|.+.+.|+.. ..+++ ++.. ++.+.+....
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~- 181 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK- 181 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH-
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH-
Confidence 4789999999999999999999999999999999988632 13444 3322 2333332111
Q ss_pred HHHhC---CCCCCC---chhhhhhhhhhHHHHHHHHHhcCCCCC--EEEEeCCCccCHHhHHHHHHHHHHHHHh-CCCeE
Q 025642 63 MEELG---LGPNGG---LIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNV 133 (250)
Q Consensus 63 m~~~~---L~~~g~---~~~~~~~~~~~ls~~la~aL~~~~~~~--~lllDEPt~LD~~~~~~i~~~ll~~l~~-~~~~v 133 (250)
..... +..-|. ....++.+. +++..+|+++.. +|+ ++.+| +.+...++ +.++.+.+ .+.++
T Consensus 182 ~~~~d~~llDt~G~~~~~~~~~~eLs-~~r~~iaRal~~--~P~~~lLvLD------a~t~~~~~-~~~~~~~~~~~~t~ 251 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHTKHNLMEELK-KVKRAIAKADPE--EPKEVWLVLD------AVTGQNGL-EQAKKFHEAVGLTG 251 (304)
T ss_dssp HHTCSEEEECCCCCCTTCHHHHHHHH-HHHHHHHHHCTT--CCSEEEEEEE------TTBCTHHH-HHHHHHHHHHCCSE
T ss_pred hCCCCEEEecCCCCCCchHHHHHHHH-HHHHHHHHhhcC--CCCeEEEEEc------HHHHHHHH-HHHHHHHHHcCCcE
Confidence 11111 111110 111122222 344889999998 999 55555 33334444 44555544 37776
Q ss_pred EEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeec
Q 025642 134 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (250)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vl 172 (250)
+++...|... .. + ...+....++.|..-+-
T Consensus 252 iivTh~d~~a--~g-----g--~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 252 VIVTKLDGTA--KG-----G--VLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp EEEECTTSSC--CC-----T--THHHHHHHHCCCEEEEE
T ss_pred EEEECCcccc--cc-----c--HHHHHHHHHCCCeEEEe
Confidence 6664334321 11 1 12244455777876543
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.29 E-value=1.7e-12 Score=123.57 Aligned_cols=124 Identities=15% Similarity=0.076 Sum_probs=77.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCce-EEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh-
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL- 81 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~-i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~- 81 (250)
+++|+||||||||||++.++|...+.+++ +++...++..+-......+. +.++++. ..|+...... ...+..
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g----~~~~~~~-~~g~~~~~~~-~p~~LS~ 356 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWG----MDFEEME-RQNLLKIVCA-YPESAGL 356 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTS----CCHHHHH-HTTSEEECCC-CGGGSCH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC----CCHHHHH-hCCCEEEEEe-ccccCCH
Confidence 68899999999999999999998886444 45655554210000000000 0122222 2222110000 011112
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHH-----hHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELF-----THVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~-----~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
.+.+++.+|+++.. +|+++|+| |++ +|.. .+..+. ++++.+++.|.+++++.
T Consensus 357 g~~q~~~~a~~l~~--~p~llilD-p~~~Ld~~~~~~~~~~~i~-~ll~~l~~~g~tvilvs 414 (525)
T 1tf7_A 357 EDHLQIIKSEINDF--KPARIAID-SLSALARGVSNNAFRQFVI-GVTGYAKQEEITGLFTN 414 (525)
T ss_dssp HHHHHHHHHHHHTT--CCSEEEEE-CHHHHTSSSCHHHHHHHHH-HHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHhh--CCCEEEEc-ChHHHHhhCChHHHHHHHH-HHHHHHHhCCCEEEEEE
Confidence 23455888988888 99999999 999 9998 887777 89999988888887664
No 86
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.28 E-value=3.9e-12 Score=128.50 Aligned_cols=107 Identities=13% Similarity=0.165 Sum_probs=66.5
Q ss_pred EEEEEcCCCCcHHHHHHHH--------HcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCch
Q 025642 4 AQLVIGPAGSGKSTYCSSL--------YRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLI 75 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l--------~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~ 75 (250)
+++|+||||||||||+|.+ .|...|..+... +.. ++++.++|+..+. .
T Consensus 664 i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~-----------~~~-----------d~i~~~ig~~d~l--~ 719 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEV-----------SIV-----------DCILARVGAGDSQ--L 719 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEE-----------ECC-----------SEEEEECC--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccc-----------hHH-----------HHHHHhcCchhhH--H
Confidence 6899999999999999999 665555432210 000 0011112221110 0
Q ss_pred hhhhhhhhhHHHHHHHHH--hcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEE
Q 025642 76 YCMEHLEDNLDDWLAEEL--DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVY 137 (250)
Q Consensus 76 ~~~~~~~~~ls~~la~aL--~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~vi~v~ 137 (250)
.....+...+ ..+++++ +. +|+++|+||||. +|+.....+...+++.+.+ .|.+++++.
T Consensus 720 ~~lStf~~e~-~~~a~il~~a~--~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aT 782 (934)
T 3thx_A 720 KGVSTFMAEM-LETASILRSAT--KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFAT 782 (934)
T ss_dssp ---CHHHHHH-HHHHHHHHHCC--TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HhHhhhHHHH-HHHHHHHHhcc--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 0012333344 5666666 55 999999999999 9999998886688999976 477776553
No 87
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.26 E-value=5.2e-12 Score=115.27 Aligned_cols=49 Identities=8% Similarity=-0.013 Sum_probs=43.1
Q ss_pred HHHHHHHHh------cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 86 DDWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 86 s~~la~aL~------~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
++.||++++ . +|+++|+||||+ ||+.+...++ ++++++++.|.+|++|.
T Consensus 287 r~~la~al~~~~~~~~--~p~~lllDEpt~~LD~~~~~~~~-~~l~~l~~~g~tvi~it 342 (365)
T 3qf7_A 287 LISISLAMSLAEVASG--RLDAFFIDEGFSSLDTENKEKIA-SVLKELERLNKVIVFIT 342 (365)
T ss_dssp HHHHHHHHHHHHHTTT--TCCEEEEESCCTTSCHHHHHHHH-HHHHGGGGSSSEEEEEE
T ss_pred HHHHHHHHHhhhcccC--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 388888888 6 999999999999 9999999999 89999987788887664
No 88
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.26 E-value=1.1e-11 Score=113.35 Aligned_cols=116 Identities=19% Similarity=0.191 Sum_probs=73.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CceEEEeecCCccCCCCCCcccC-hhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMD-IRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~i~i~~~dp~~~~~~y~~~~~-i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
.++|+|||||||||++++|+|+++|. +|+|.+.+.+.. ..+..... +.+. ++|+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e---~~~~~~~~~v~Q~--------~~g~~~~---------- 196 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE---YVFKHKKSIVNQR--------EVGEDTK---------- 196 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC---SCCCCSSSEEEEE--------EBTTTBS----------
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh---hhhccCceEEEee--------ecCCCHH----------
Confidence 58999999999999999999999987 899988774321 11111100 0000 1232221
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
.++..++++|.. +|+++++|||+ |..+.. ..++.. ..|.+++++ +|. .+...++++++.
T Consensus 197 --~~~~~l~~~L~~--~pd~illdE~~--d~e~~~----~~l~~~-~~g~~vi~t----~H~-~~~~~~~~rl~~ 255 (372)
T 2ewv_A 197 --SFADALRAALRE--DPDVIFVGEMR--DLETVE----TALRAA-ETGHLVFGT----LHT-NTAIDTIHRIVD 255 (372)
T ss_dssp --CSHHHHHHHTTS--CCSEEEESCCC--SHHHHH----HHHHHH-TTTCEEEEC----CCC-CSHHHHHHHHHH
T ss_pred --HHHHHHHHHhhh--CcCEEEECCCC--CHHHHH----HHHHHH-hcCCEEEEE----ECc-chHHHHHHHHHH
Confidence 235788999998 99999999999 554432 334443 457776443 243 446666666544
No 89
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.25 E-value=7.3e-13 Score=118.66 Aligned_cols=106 Identities=13% Similarity=-0.022 Sum_probs=64.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc--eEEEeecCCcc------CCCCCCcccCh---hhhhhHHHHHHHhCCCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAA------ENFDYPVAMDI---RELISLEDVMEELGLGPN 71 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~i~i~~~dp~~------~~~~y~~~~~i---~~~i~~~~vm~~~~L~~~ 71 (250)
.+++|+||||||||||+++|+|+++|..| .|.++.+|+.- +++.+...... .+.-.+.+.++.++ ...
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~ 169 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGS 169 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTC
T ss_pred EEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCc
Confidence 68999999999999999999999998766 57676666421 11221100000 01112556777776 222
Q ss_pred CCchhhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCH
Q 025642 72 GGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IEL 112 (250)
Q Consensus 72 g~~~~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~ 112 (250)
... ..-.+.. .++++.+|++++. +|+++|+|||+. .|.
T Consensus 170 ~~~-~~~~lS~G~~qRv~~a~al~~--~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 170 DYA-CAPVYSHLHYDIIPGAEQVVR--HPDILILEGLNVLQTG 209 (312)
T ss_dssp SCE-EEEEEETTTTEEEEEEEEEEC--SCSEEEEECTTTTCCC
T ss_pred ccC-CcccCChhhhhhhhhHHHhcc--CCCEEEECCccccCCc
Confidence 101 0001111 1122567788888 999999999999 764
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.24 E-value=1.1e-12 Score=124.83 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=76.8
Q ss_pred EEEEEcCCCCcHHHHHHH--HHcCCCCCCceEEEeecCCcc------CCCCC-CcccChhhhhhHHHHHHHhCCCCCCCc
Q 025642 4 AQLVIGPAGSGKSTYCSS--LYRHCETVRRTMHIVNLDPAA------ENFDY-PVAMDIRELISLEDVMEELGLGPNGGL 74 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~--l~g~l~~~~G~i~i~~~dp~~------~~~~y-~~~~~i~~~i~~~~vm~~~~L~~~g~~ 74 (250)
+++|+||||||||||++. ++|+.+|.+|.|++.+.++.. ..++| +++....+.+. .+...+....
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~------~~~~~~~~~~ 114 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLF------ILDASPDPEG 114 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEE------EEECCCCSSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEE------EEecCcccch
Confidence 589999999999999999 789999899999999877421 22333 11110000000 0000000000
Q ss_pred hhhhhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-c-----CHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 75 IYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-I-----ELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 75 ~~~~~~-~~~~ls~~la~aL~~~~~~~~lllDEPt~-L-----D~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
...++. -...+...+..+|... +|+.+++|||++ . |+..+..+. ++++.+++.|.+++++.
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~g-~~~~lilDe~t~~~~~~~lD~~~~~~l~-~ll~~l~~~g~tvl~it 182 (525)
T 1tf7_A 115 QEVVGGFDLSALIERINYAIQKY-RARRVSIDSVTSVFQQYDASSVVRRELF-RLVARLKQIGATTVMTT 182 (525)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHH-TCSEEEEECSTTTSTTTCCHHHHHHHHH-HHHHHHHHHTCEEEEEE
T ss_pred hhhhcccCHHHHHHHHHHHHHHc-CCCEEEECCHHHHHHhcCCHHHHHHHHH-HHHHHHHHCCCEEEEEe
Confidence 000000 0112224555566422 899999999987 3 677888877 99999987788887663
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.22 E-value=1.3e-11 Score=100.74 Aligned_cols=99 Identities=12% Similarity=0.127 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc-eEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
-+++|+||||+|||||++++++.+.+..| .+.+. +..+.+ +.+...+.-+.. .
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~---------------~~~~~~--~~~~~~~~~~~~-------~-- 92 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF---------------DTKDLI--FRLKHLMDEGKD-------T-- 92 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE---------------EHHHHH--HHHHHHHHHTCC-------S--
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE---------------EHHHHH--HHHHHHhcCchH-------H--
Confidence 35789999999999999999998876555 22221 122221 111111110100 0
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc--cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~~lllDEPt~--LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
.. ... .. +|+++++|||+. +|......+. ++++...+++.+++++.
T Consensus 93 -----~~-~~~-~~--~~~llilDE~~~~~~~~~~~~~l~-~ll~~~~~~~~~ii~ts 140 (180)
T 3ec2_A 93 -----KF-LKT-VL--NSPVLVLDDLGSERLSDWQRELIS-YIITYRYNNLKSTIITT 140 (180)
T ss_dssp -----HH-HHH-HH--TCSEEEEETCSSSCCCHHHHHHHH-HHHHHHHHTTCEEEEEC
T ss_pred -----HH-HHH-hc--CCCEEEEeCCCCCcCCHHHHHHHH-HHHHHHHHcCCCEEEEc
Confidence 11 111 23 799999999984 8998887777 88888776777776553
No 92
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.22 E-value=8.2e-12 Score=109.87 Aligned_cols=126 Identities=11% Similarity=0.095 Sum_probs=68.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCc-eEEEeecCCccC----CC-CCCccc--Chhhhhh------------HHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAE----NF-DYPVAM--DIRELIS------------LEDVM 63 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~i~i~~~dp~~~----~~-~y~~~~--~i~~~i~------------~~~vm 63 (250)
+++|+||||||||||++.++|...+.+| +|.+.+.+.... .+ .+.+.. ...+.+. +++++
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 116 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELF 116 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHHh
Confidence 5889999999999999999999998877 887766543211 00 001111 1111111 11222
Q ss_pred HHhCC--CCCCCchhhhhhhhhhHH-HHHHHHHhcCCCCCEEEEeCCCc-cC------H-HhHHHHHHHHHHHHHh-CCC
Q 025642 64 EELGL--GPNGGLIYCMEHLEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IE------L-FTHVPVLRNFVDHLKS-RNF 131 (250)
Q Consensus 64 ~~~~L--~~~g~~~~~~~~~~~~ls-~~la~aL~~~~~~~~lllDEPt~-LD------~-~~~~~i~~~ll~~l~~-~~~ 131 (250)
+..++ .... .+.....+. ...++++.. +|+++|+|||+. ++ . .....++ +.++++++ .|.
T Consensus 117 ~~~~l~i~~~~-----~~~~~~~l~~~~~a~~~~~--~p~llilDept~~~~~~~~~d~~~~~~~i~-~~L~~la~~~~~ 188 (296)
T 1cr0_A 117 GNDTFHLYDSF-----AEAETDRLLAKLAYMRSGL--GCDVIILDHISIVVSASGESDERKMIDNLM-TKLKGFAKSTGV 188 (296)
T ss_dssp SSSCEEEECCC-----CSCCHHHHHHHHHHHHHTT--CCSEEEEEEEC-----------CHHHHHHH-HHHHHHHHHHCC
T ss_pred ccCCEEEECCC-----CCCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCCCCCCCHHHHHHHHH-HHHHHHHHHhCC
Confidence 21122 1110 011222221 112555666 999999999999 43 2 3344555 66777764 488
Q ss_pred eEEEEE
Q 025642 132 NVCAVY 137 (250)
Q Consensus 132 ~vi~v~ 137 (250)
+|++++
T Consensus 189 ~vi~vs 194 (296)
T 1cr0_A 189 VLVVIC 194 (296)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 887764
No 93
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.19 E-value=5.4e-13 Score=111.27 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
.++|+|||||||||+++.|+|+++ ++| |.+.|.++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred EEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence 478999999999999999999999 889 88887654
No 94
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.18 E-value=3.6e-11 Score=108.40 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=87.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc-----------CCCC--C-Ccc------cChhhhhhHHHH
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFD--Y-PVA------MDIRELISLEDV 62 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~-----------~~~~--y-~~~------~~i~~~i~~~~v 62 (250)
.+++++|||||||||+++.|+|+++|.+|+|.+.+.|+.. +.++ + ++. .++++.+.....
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~ 209 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKA 209 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999998732 1122 2 222 123333221110
Q ss_pred HHHhC---CCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHH-hCCCeEEEEEe
Q 025642 63 MEELG---LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYL 138 (250)
Q Consensus 63 m~~~~---L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~-~~~~~vi~v~l 138 (250)
.... +... |...........+ ..+++++.. ++.++++|.++.. +++ +.++.+. +.+.+.+++.-
T Consensus 210 -~~~d~vliDta-G~~~~~~~l~~eL-~~i~ral~~--de~llvLDa~t~~------~~~-~~~~~~~~~~~it~iilTK 277 (328)
T 3e70_C 210 -RGIDVVLIDTA-GRSETNRNLMDEM-KKIARVTKP--NLVIFVGDALAGN------AIV-EQARQFNEAVKIDGIILTK 277 (328)
T ss_dssp -HTCSEEEEEEC-CSCCTTTCHHHHH-HHHHHHHCC--SEEEEEEEGGGTT------HHH-HHHHHHHHHSCCCEEEEEC
T ss_pred -ccchhhHHhhc-cchhHHHHHHHHH-HHHHHHhcC--CCCEEEEecHHHH------HHH-HHHHHHHHhcCCCEEEEeC
Confidence 1111 0111 1111113344555 557788876 7788888866653 334 4455555 35777766655
Q ss_pred ccccccccHHHHHHhhHHhhhhHhHhcCCeeeec
Q 025642 139 LDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (250)
Q Consensus 139 ~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vl 172 (250)
+|...-. . .+.+.....+.|..-+-
T Consensus 278 lD~~a~~--G-------~~l~~~~~~~~pi~~i~ 302 (328)
T 3e70_C 278 LDADARG--G-------AALSISYVIDAPILFVG 302 (328)
T ss_dssp GGGCSCC--H-------HHHHHHHHHTCCEEEEE
T ss_pred cCCccch--h-------HHHHHHHHHCCCEEEEe
Confidence 6643211 1 13355566788877544
No 95
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.17 E-value=6.7e-12 Score=127.97 Aligned_cols=123 Identities=16% Similarity=0.137 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC--CceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~--~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~ 80 (250)
-+++|+||||||||||+|.+ |++.+. -|. .-|+.. ..+++.+.+ +.++|+..+.. .....
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~-----~Vpq~~-----~~l~v~d~I-----~~rig~~d~~~--~~~st 851 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGC-----YVPAEV-----CRLTPIDRV-----FTRLGASDRIM--SGEST 851 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HHHHHHHTTTC-----CEESSE-----EEECCCSBE-----EEECC-----------CH
T ss_pred cEEEEECCCCCChHHHHHHH-HHHHHHhheeE-----EeccCc-----CCCCHHHHH-----HHHcCCHHHHh--hchhh
Confidence 36899999999999999999 887642 110 011110 112222221 11223322210 00123
Q ss_pred hhhhHH-HHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEEEeccccccccHHH
Q 025642 81 LEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTK 149 (250)
Q Consensus 81 ~~~~ls-~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~-~~~vi~v~l~d~~~~~d~~~ 149 (250)
+...++ .+++++++. +|+++|+||||. +|+.....+...+++.+.+. |.+++++ +|+......
T Consensus 852 f~~em~~~a~al~la~--~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~----TH~~el~~~ 917 (1022)
T 2o8b_B 852 FFVELSETASILMHAT--AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFS----THYHSLVED 917 (1022)
T ss_dssp HHHHHHHHHHHHHHCC--TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEE----CCCHHHHHH
T ss_pred hHHHHHHHHHHHHhCC--CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE----eCCHHHHHH
Confidence 333333 677777777 999999999999 99998656544899999865 7777654 455543333
No 96
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.17 E-value=1.7e-11 Score=111.32 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC--CCCC----ce-EEEeecCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVR----RT-MHIVNLDP 40 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~----G~-i~i~~~dp 40 (250)
-+++|+||||||||||++.+++.. +|+. |+ +++.+.+.
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 368899999999999999999988 5554 67 77776553
No 97
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.17 E-value=2.2e-11 Score=122.74 Aligned_cols=47 Identities=6% Similarity=0.058 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025642 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (250)
Q Consensus 87 ~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~vi~v 136 (250)
..++++ +. +|+++|+||||+ +|+.....+...+++.+.+ .|.+++++
T Consensus 744 ~~il~~-a~--~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~v 792 (918)
T 3thx_B 744 AEIIRK-AT--SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV 792 (918)
T ss_dssp HHHHHH-CC--TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHh-cc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 344444 45 899999999999 9999999988788998865 57777655
No 98
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.13 E-value=3.1e-11 Score=119.77 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=63.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCceEEEeecCCcc-CCCCCC----cccChhhhhhHHHHHHHhCCCCCCCchhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA-ENFDYP----VAMDIRELISLEDVMEELGLGPNGGLIYC 77 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~i~i~~~dp~~-~~~~y~----~~~~i~~~i~~~~vm~~~~L~~~g~~~~~ 77 (250)
+++|+||||||||||+|+++|+.. +..|.+. |+. ..+++. ..+++.+.+. .+.
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----pa~~~~i~~v~~i~~~~~~~d~l~---------~g~------- 636 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----PAEEAHLPLFDGIYTRIGASDDLA---------GGK------- 636 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----SSSEEEECCCSEEEEECCC---------------CC-------
T ss_pred EEEEECCCCCChHHHHHHHHhhhhhcccCcee-----ehhccceeeHHHhhccCCHHHHHH---------hcc-------
Confidence 578999999999999999999864 5667642 221 123331 1222333211 111
Q ss_pred hhhhhhhHHHHHHHHH--hcCCCCCEEEEeCC---Cc-cCHHhHH-HHHHHHHHHHHhCCCeEEEE
Q 025642 78 MEHLEDNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHV-PVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 78 ~~~~~~~ls~~la~aL--~~~~~~~~lllDEP---t~-LD~~~~~-~i~~~ll~~l~~~~~~vi~v 136 (250)
.....++ ..+++++ +. +|+++|+||| |+ +|..+.. .++ +.+. +.|.+++++
T Consensus 637 -S~~~~e~-~~la~il~~a~--~p~LlLLDEpgrGTs~lD~~~~~~~i~-~~L~---~~g~~vl~~ 694 (765)
T 1ewq_A 637 -STFMVEM-EEVALILKEAT--ENSLVLLDEVGRGTSSLDGVAIATAVA-EALH---ERRAYTLFA 694 (765)
T ss_dssp -SHHHHHH-HHHHHHHHHCC--TTEEEEEESTTTTSCHHHHHHHHHHHH-HHHH---HHTCEEEEE
T ss_pred -cHHHHHH-HHHHHHHHhcc--CCCEEEEECCCCCCCCcCHHHHHHHHH-HHHH---hCCCEEEEE
Confidence 1122233 5677777 66 9999999999 88 9988753 344 4433 346676554
No 99
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.10 E-value=3.4e-10 Score=101.95 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 87 ~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+++|+++.. +|+++|+|||++ ||+..+..++ ++++.+.+.+.+++++.
T Consensus 263 l~~a~~l~~--~p~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~vi~~s 311 (339)
T 3qkt_A 263 LAMSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILVS 311 (339)
T ss_dssp HHHHHHTTT--TTCEEEEECCCTTCCHHHHHHHH-HHHHHTGGGSSEEEEEE
T ss_pred HHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEE
Confidence 567788877 999999999999 9999999998 88888876677776654
No 100
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.08 E-value=9e-11 Score=102.54 Aligned_cols=127 Identities=13% Similarity=0.105 Sum_probs=69.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC----------CceEEEe-ecCCccCCCCCCc--ccChhhhhhHHHHHHHhCCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV----------RRTMHIV-NLDPAAENFDYPV--AMDIRELISLEDVMEELGLGP 70 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~----------~G~i~i~-~~dp~~~~~~y~~--~~~i~~~i~~~~vm~~~~L~~ 70 (250)
+++|+||||||||||++.+++.+..- .|.+.+. ..++..+-..... ..+. +....+++++.+++.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~-~~~~~~~~~~~l~l~~ 110 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHL-SAEERQAVADGLLIQP 110 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTS-CHHHHHHHHHHEEECC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhc-ChhhhhhccCceEEee
Confidence 57899999999999999999865431 2333222 1111100000000 0000 0001334566666654
Q ss_pred CCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc---cCHHhH---HHHHHHHHHHHH-hCCCeEEEEE
Q 025642 71 NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ---IELFTH---VPVLRNFVDHLK-SRNFNVCAVY 137 (250)
Q Consensus 71 ~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~---LD~~~~---~~i~~~ll~~l~-~~~~~vi~v~ 137 (250)
..+.. ...+.... ...+++++. +|+++|+|||++ +|.... ..++ +.+..+. +.|.++++++
T Consensus 111 ~~~~~--~~~ls~g~-~~~i~~l~~--~~~livlDe~~~~~~~d~~~~~~~~~~~-~~L~~l~~~~g~tvi~i~ 178 (279)
T 1nlf_A 111 LIGSL--PNIMAPEW-FDGLKRAAE--GRRLMVLDTLRRFHIEEENASGPMAQVI-GRMEAIAADTGCSIVFLH 178 (279)
T ss_dssp CTTSC--CCTTSHHH-HHHHHHHHT--TCSEEEEECGGGGCCSCTTCHHHHHHHH-HHHHHHHHHHCCEEEEEE
T ss_pred cCCCC--cccCCHHH-HHHHHHhcC--CCCEEEECCHHHhcCCCcCchHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence 32110 11122222 445567777 899999999998 455333 5666 5666664 4588888775
No 101
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.08 E-value=4.6e-12 Score=107.38 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=65.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc--------cCCCCC-CcccChhh-h-----------------
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-PVAMDIRE-L----------------- 56 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~--------~~~~~y-~~~~~i~~-~----------------- 56 (250)
+++|+||||||||||+++|+|++ | |+|.+ |.+.. ...+.| +++..... .
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFY 100 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccC
Confidence 57999999999999999999988 5 89988 65431 123444 22111000 0
Q ss_pred ----hhHHHHHHHhCCCCCCCchhhhhhh-hhhHHHHH-----HHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025642 57 ----ISLEDVMEELGLGPNGGLIYCMEHL-EDNLDDWL-----AEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (250)
Q Consensus 57 ----i~~~~vm~~~~L~~~g~~~~~~~~~-~~~ls~~l-----a~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~ 125 (250)
-.++++++..... +...+.. .++++.++ ++++.. .|+++++|||++ +|..+...+. +.+..
T Consensus 101 g~~~~~i~~~l~~~~~~-----il~~~lsggq~qR~~i~~~~~~~~ll~--~~~~~~Lde~~~~~d~~~~~~i~-~~l~~ 172 (218)
T 1z6g_A 101 GTLKSEYDKAKEQNKIC-----LFEMNINGVKQLKKSTHIKNALYIFIK--PPSTDVLLSRLLTRNTENQEQIQ-KRMEQ 172 (218)
T ss_dssp EEEHHHHHHHHHTTCEE-----EEEECHHHHHHHTTCSSCCSCEEEEEE--CSCHHHHHHHHHHTCCCCHHHHH-HHHHH
T ss_pred CCcHHHHHHHHhCCCcE-----EEEecHHHHHHHHHHhcCCCcEEEEEe--CcCHHHHHHHHHhcCCCCHHHHH-HHHHH
Confidence 0133444432110 0001111 12233555 456666 789999999999 9988877776 44444
Q ss_pred H
Q 025642 126 L 126 (250)
Q Consensus 126 l 126 (250)
+
T Consensus 173 ~ 173 (218)
T 1z6g_A 173 L 173 (218)
T ss_dssp H
T ss_pred H
Confidence 3
No 102
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.06 E-value=1.2e-09 Score=90.78 Aligned_cols=116 Identities=14% Similarity=0.098 Sum_probs=62.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhh-----hhHHHHHHHhCCCC-CCCchhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIREL-----ISLEDVMEELGLGP-NGGLIYC 77 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~-----i~~~~vm~~~~L~~-~g~~~~~ 77 (250)
+++|+||||||||||++.+++ . .++.+.+...+.. +. + ..+.+. +..+++++.+.+.. ..+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 88 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL--L-SGKKVAYVDTEGG---FS--P-ERLVQMAETRGLNPEEALSRFILFTPSDF---- 88 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEESSCC---CC--H-HHHHHHHHTTTCCHHHHHHHEEEECCTTT----
T ss_pred EEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEECCCC---CC--H-HHHHHHHHhcCCChHHHhhcEEEEecCCH----
Confidence 678999999999999999999 3 3455555543321 00 0 001100 01222333322211 110
Q ss_pred hhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhH--------HHHHHHHHHHHHh-CCCeEEEEE
Q 025642 78 MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH--------VPVLRNFVDHLKS-RNFNVCAVY 137 (250)
Q Consensus 78 ~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~--------~~i~~~ll~~l~~-~~~~vi~v~ 137 (250)
+.. ... ...++++... +|+++++|||+. +|.... ..++ +.++++.+ .+.++++++
T Consensus 89 -~~~-~~~-~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~-~~L~~l~~~~~~~vi~~~ 153 (220)
T 2cvh_A 89 -KEQ-RRV-IGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAELSRQL-QVLLWIARKHNIPVIVIN 153 (220)
T ss_dssp -SHH-HHH-HHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHHHHHHH-HHHHHHHHHHTCCEEEEE
T ss_pred -HHH-HHH-HHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence 000 111 4456677762 499999999999 887432 2233 33555543 478877665
No 103
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.05 E-value=4e-12 Score=106.08 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhh-------------hhhHHHHHHHhCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRE-------------LISLEDVMEELGLG 69 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~-------------~i~~~~vm~~~~L~ 69 (250)
.+++|+|||||||||+++.|+|++.| .+.+..+|+....... .++.+ .-.+.+.++.++++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDLGH---LPLEERLRVNYDHPDAFDLALYLEHAQALLRG 80 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCCTT---SCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCccc---ccHHHhcCCCCCChhhhhHHHHHHHHHHHHcC
Confidence 57999999999999999999998765 5777777653221110 11111 11245666666665
Q ss_pred CCCCchhhhhhhhh-----hHHHHHHHHHhcCCCCCEEEEeCCCc--------cCHHhHHHHHHHHHHH-HHhCCCeE
Q 025642 70 PNGGLIYCMEHLED-----NLDDWLAEELDNYLDDDYLVFDCPGQ--------IELFTHVPVLRNFVDH-LKSRNFNV 133 (250)
Q Consensus 70 ~~g~~~~~~~~~~~-----~ls~~la~aL~~~~~~~~lllDEPt~--------LD~~~~~~i~~~ll~~-l~~~~~~v 133 (250)
..... ...+.... .+++.+++++.. +|.++++|||++ +|......+. +.+++ .++.|.++
T Consensus 81 ~~~~~-~~~~~s~g~~~~~~~~~~~~~~li~--~~~ll~~de~~~~~~d~~i~ld~~~~~~~~-r~l~r~~~~~g~t~ 154 (211)
T 3asz_A 81 LPVEM-PVYDFRAYTRSPRRTPVRPAPVVIL--EGILVLYPKELRDLMDLKVFVDADADERFI-RRLKRDVLERGRSL 154 (211)
T ss_dssp CCEEE-CCEETTTTEECSSCEEECCCSEEEE--ESTTTTSSHHHHTTCSEEEEEECCHHHHHH-HHHHHHHHHSCCCH
T ss_pred CCcCC-CcccCcccCCCCCeEEeCCCcEEEE--eehhhccCHHHHHhcCEEEEEeCCHHHHHH-HHHHHHHHHhCCCH
Confidence 42100 00011110 011234455555 677777788865 5776676666 44444 34557665
No 104
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.04 E-value=6.7e-11 Score=100.65 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=65.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--CCceEEEeecCCcc---CCCCC-CcccChhhhhhHHH-HHHHhCCCCCCCchh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA---ENFDY-PVAMDIRELISLED-VMEELGLGPNGGLIY 76 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~i~i~~~dp~~---~~~~y-~~~~~i~~~i~~~~-vm~~~~L~~~g~~~~ 76 (250)
+++|+||||||||||+++|+|..+| ..|.|.+.+.+|.. ..+.| +++....+..+... ..+...+. +..|
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~---~~~y 94 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF---GNYY 94 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET---TEEE
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH---hccC
Confidence 6889999999999999999999985 68899988877643 23555 33221111111100 00111110 1111
Q ss_pred hhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 77 CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 77 ~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
.... ..+. .++. .++++|+| +|+.....+. +.+. .+.+|+++
T Consensus 95 -----g~~~-~~v~-~~l~--~G~illLD----LD~~~~~~i~-~~l~----~~~tI~i~ 136 (219)
T 1s96_A 95 -----GTSR-EAIE-QVLA--TGVDVFLD----IDWQGAQQIR-QKMP----HARSIFIL 136 (219)
T ss_dssp -----EEEH-HHHH-HHHT--TTCEEEEE----CCHHHHHHHH-HHCT----TCEEEEEE
T ss_pred -----CCCH-HHHH-HHHh--cCCeEEEE----ECHHHHHHHH-HHcc----CCEEEEEE
Confidence 1111 2333 3334 67999999 9999998877 4433 46666544
No 105
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.03 E-value=1.7e-10 Score=115.07 Aligned_cols=112 Identities=15% Similarity=0.130 Sum_probs=62.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCceEEEeecCCcc-CCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~i~i~~~dp~~-~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
+++|+||||||||||+|+++|+.. ...|.. -|+. ..+++... +...+.+.+-+.. ++. .+
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-----vpa~~~~i~~~~~--i~~~~~~~d~l~~-~~s----------tf 670 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIALMAYIGSY-----VPAQKVEIGPIDR--IFTRVGAADDLAS-GRS----------TF 670 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-----BSSSEEEECCCCE--EEEEEC----------------------C
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhcCcc-----cchhcccceeHHH--HHhhCCHHHHHHh-hhh----------hh
Confidence 689999999999999999999642 222311 1211 11222110 1111111111110 111 11
Q ss_pred hhhHHHHHHHHH--hcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025642 82 EDNLDDWLAEEL--DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (250)
Q Consensus 82 ~~~ls~~la~aL--~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~-~~~~vi~v 136 (250)
...+ ..++.++ +. +|+++|+||||. +|+.....+...+++.+.+ .|.+++++
T Consensus 671 ~~e~-~~~~~il~~a~--~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~ 726 (800)
T 1wb9_A 671 MVEM-TETANILHNAT--EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA 726 (800)
T ss_dssp HHHH-HHHHHHHHHCC--TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hHHH-HHHHHHHHhcc--CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEE
Confidence 1122 2223333 45 999999999999 9988877765588999987 47777655
No 106
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.03 E-value=2.2e-09 Score=90.66 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc--CCCC-----CCceEEEeecC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYR--HCET-----VRRTMHIVNLD 39 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g--~l~~-----~~G~i~i~~~d 39 (250)
+++|+||||||||||++.+++ ..++ ..|.+++.+.+
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 688999999999999999999 4544 45667776554
No 107
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.98 E-value=1.1e-09 Score=97.66 Aligned_cols=89 Identities=22% Similarity=0.301 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCC----CCchhhh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPN----GGLIYCM 78 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~----g~~~~~~ 78 (250)
.+++++|||||||||+++.|++++++.+|+|.+.+.|+.... ..+. +..+.++.++... ++..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~--------a~eq--L~~~~~~~gl~~~~~~s~~~~--- 171 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA--------AIEQ--LKIWGERVGATVISHSEGADP--- 171 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH--------HHHH--HHHHHHHHTCEEECCSTTCCH---
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH--------HHHH--HHHHHHHcCCcEEecCCccCH---
Confidence 578999999999999999999999999999999998863210 1111 3445566665421 1110
Q ss_pred hhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc
Q 025642 79 EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (250)
Q Consensus 79 ~~~~~~ls~~la~aL~~~~~~~~lllDEPt~ 109 (250)
..-....+++++.. +++++|+|||+.
T Consensus 172 ---~~v~~~al~~a~~~--~~dvvIiDtpg~ 197 (306)
T 1vma_A 172 ---AAVAFDAVAHALAR--NKDVVIIDTAGR 197 (306)
T ss_dssp ---HHHHHHHHHHHHHT--TCSEEEEEECCC
T ss_pred ---HHHHHHHHHHHHhc--CCCEEEEECCCc
Confidence 00011367778888 999999999997
No 108
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.96 E-value=4.3e-09 Score=93.27 Aligned_cols=108 Identities=17% Similarity=0.075 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
-+++++|+||+||||+++.+++++.+.+|+|.+.+.|+..... . +. ...+.+..++....+. ...-+
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~-------~-~q--l~~~~~~~~l~~~~~~---~~~~p 165 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA-------R-EQ--LRLLGEKVGVPVLEVM---DGESP 165 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHH-------H-HH--HHHHHHHHTCCEEECC---TTCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhH-------H-HH--HHHhcccCCeEEEEcC---CCCCH
Confidence 4678899999999999999999999999999999988743110 0 11 2234455565321100 00111
Q ss_pred -hhHHHHHHHHHhcCCCCCEEEEeCC-Cc-cCHHhHHHHHHHHHHHH
Q 025642 83 -DNLDDWLAEELDNYLDDDYLVFDCP-GQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 83 -~~ls~~la~aL~~~~~~~~lllDEP-t~-LD~~~~~~i~~~ll~~l 126 (250)
.-++..++.+... +++++|+||| +. +|.....++. .+.+.+
T Consensus 166 ~~l~~~~l~~~~~~--~~D~viiDtpp~~~~d~~~~~~l~-~~~~~~ 209 (295)
T 1ls1_A 166 ESIRRRVEEKARLE--ARDLILVDTAGRLQIDEPLMGELA-RLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHHH--TCCEEEEECCCCSSCCHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCEEEEeCCCCccccHHHHHHHH-HHhhhc
Confidence 1123567766666 8999999999 44 7877666665 665555
No 109
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.95 E-value=1.3e-09 Score=97.45 Aligned_cols=116 Identities=13% Similarity=0.222 Sum_probs=59.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc-CCCCCCceEEEeecCCcc-----CCCCCCcc-----c-----ChhhhhhHHHHHHHhCC
Q 025642 5 QLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAA-----ENFDYPVA-----M-----DIRELISLEDVMEELGL 68 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g-~l~~~~G~i~i~~~dp~~-----~~~~y~~~-----~-----~i~~~i~~~~vm~~~~L 68 (250)
+++.||||+||||+++.+++ ++.+..|.+.+.|.+... ..+.+.+. + ...+...+++.++.+.-
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 118 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHH
Confidence 78999999999999999999 788999999887754321 11111000 0 00000012333333221
Q ss_pred CCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 69 GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 69 ~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
...- .... .+ ..+.. +++++|+|||+.+|......+. +.+++.. .+.+++++
T Consensus 119 ~~~~------~~~~-~l-----s~l~~--~~~vlilDE~~~L~~~~~~~L~-~~le~~~-~~~~~Il~ 170 (354)
T 1sxj_E 119 MEQV------DFQD-SK-----DGLAH--RYKCVIINEANSLTKDAQAALR-RTMEKYS-KNIRLIMV 170 (354)
T ss_dssp TTC--------------------------CCEEEEEECTTSSCHHHHHHHH-HHHHHST-TTEEEEEE
T ss_pred hccc------cccc-cc-----cccCC--CCeEEEEeCccccCHHHHHHHH-HHHHhhc-CCCEEEEE
Confidence 1100 0000 01 01344 8999999999999998887777 7777653 34555444
No 110
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.94 E-value=4.6e-10 Score=101.98 Aligned_cols=126 Identities=11% Similarity=0.104 Sum_probs=66.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC----ceEEEeecCCccCCCCCCcccChhhhhhH--HH-HHHHhCCCCCC----
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVR----RTMHIVNLDPAAENFDYPVAMDIRELISL--ED-VMEELGLGPNG---- 72 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~----G~i~i~~~dp~~~~~~y~~~~~i~~~i~~--~~-vm~~~~L~~~g---- 72 (250)
.++|+||||||||||+++|+|+++|+. |++++.+..... ...+.. .+.+. +.. .+ .........+-
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~-~~~~~~-~~~~~-I~~~~q~~~~~~~t~~~nl~~~~ 248 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD-EQAMQY-SDYPQ-MALGHQRYIDYAVRHSHKIAFID 248 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSC-TTSSCT-TTHHH-HHHHHHHHHHHHHHHCSSEEEES
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCC-cccCCh-hHHHH-HHHHHHHHHHHHHhccCCEEEEe
Confidence 579999999999999999999999998 888764211111 111111 01111 110 00 00000001110
Q ss_pred -Cc----hhhhhhhhhhHHHHHHHHHh-cCCCCCEEEEeC---CC------c-cCHHhHHHHHHHHHHHHH-hCCCeEEE
Q 025642 73 -GL----IYCMEHLEDNLDDWLAEELD-NYLDDDYLVFDC---PG------Q-IELFTHVPVLRNFVDHLK-SRNFNVCA 135 (250)
Q Consensus 73 -~~----~~~~~~~~~~ls~~la~aL~-~~~~~~~lllDE---Pt------~-LD~~~~~~i~~~ll~~l~-~~~~~vi~ 135 (250)
.. .+... ...+++.++++++. . +|+++++|| |+ . +|...+..+. +.++++. +.+.++++
T Consensus 249 ~~~~~~~~~~~~-~~~~~~~~i~~~~~~~--~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~-~~l~~l~~~~~~~ili 324 (365)
T 1lw7_A 249 TDFITTQAFCIQ-YEGKAHPFLDSMIKEY--PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQ-QLLKKLLDKYKVPYIE 324 (365)
T ss_dssp SCHHHHHHHHHH-HHSCCCHHHHHHHHHS--CCSEEEEEECCCC-----------CCSHHHHH-HHHHHHHHGGGCCCEE
T ss_pred CCchHHHHHHHH-HcCCCCHHHHHHHhhc--CCCEEEECCCCCCcccCCCcCCccHHHHHHHH-HHHHHHHHHcCCCEEE
Confidence 00 00000 01111245555553 4 899999999 64 4 7888888888 6665554 44777765
Q ss_pred E
Q 025642 136 V 136 (250)
Q Consensus 136 v 136 (250)
+
T Consensus 325 l 325 (365)
T 1lw7_A 325 I 325 (365)
T ss_dssp E
T ss_pred e
Confidence 5
No 111
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.93 E-value=8.8e-09 Score=93.27 Aligned_cols=41 Identities=22% Similarity=0.436 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE 43 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~ 43 (250)
+.++|+|+||||||||++.+.|.+.+.+|+|.+.+.||...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 67999999999999999999999999999999999998653
No 112
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.92 E-value=6.8e-10 Score=103.72 Aligned_cols=143 Identities=9% Similarity=0.006 Sum_probs=84.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC---Ccc------------CCCCC-Cc-ccChhhhhhHHH----H
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD---PAA------------ENFDY-PV-AMDIRELISLED----V 62 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d---p~~------------~~~~y-~~-~~~i~~~i~~~~----v 62 (250)
.++|+||||||||||+++|+|+.+|+.|.|.+.|.+ ... ..+.| ++ +.......++.+ .
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ 238 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRI 238 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999973 211 12233 22 223333333222 1
Q ss_pred HHHhCCCCCCCch----hhhhhhhhhH-HHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh---C-CC-
Q 025642 63 MEELGLGPNGGLI----YCMEHLEDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS---R-NF- 131 (250)
Q Consensus 63 m~~~~L~~~g~~~----~~~~~~~~~l-s~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~---~-~~- 131 (250)
.+.++- .+..+ ..+..+...+ ++.+| +. +|++ +. +|+.....+. ++++++.+ + |.
T Consensus 239 ae~~~~--~~~~v~~~ld~l~~lS~g~qrvslA---l~--~p~~------t~glD~~~~~~l~-~ll~r~~~~~~~~Gsi 304 (438)
T 2dpy_A 239 AEDFRD--RGQHVLLIMDSLTRYAMAQREIALA---IG--EPPA------TKGYPPSVFAKLP-ALVERAGNGIHGGGSI 304 (438)
T ss_dssp HHHHHT--TTCEEEEEEECHHHHHHHHHHHHHH---TT--CCCC------SSSCCTTHHHHHH-HHHTTCSCCSTTSCEE
T ss_pred HHHHHh--CCCCHHHHHHhHHHHHHHHHHHHHH---hC--CCcc------cccCCHHHHHHHH-HHHHHHHhccCCCCcc
Confidence 122221 11111 0112222222 24444 44 7776 77 9999999988 88888755 2 42
Q ss_pred eEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 132 NVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 132 ~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
|.+.+-++.+|.+. ..+++.++....+.+
T Consensus 305 T~~~tVlv~tHdl~--~~iad~v~~l~dG~I 333 (438)
T 2dpy_A 305 TAFYTVLTEGDDQQ--DPIADSARAILDGHI 333 (438)
T ss_dssp EEEEEEECSSSCSC--CHHHHHHHHHSSEEE
T ss_pred cceeEEEEeCCCcc--chhhceEEEEeCcEE
Confidence 33334457778887 456666666555444
No 113
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.92 E-value=1.8e-09 Score=97.94 Aligned_cols=148 Identities=11% Similarity=0.085 Sum_probs=84.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc--CCCCC-------------Cc-ccChhhhhh----HHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-------------PV-AMDIRELIS----LEDVM 63 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~--~~~~y-------------~~-~~~i~~~i~----~~~vm 63 (250)
.++|+||||||||||+++|+|+.+|+.|.+.+.|.++.. +.+.+ .+ +....+.+. ...+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~a 152 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIA 152 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999998876311 10111 00 111111111 11111
Q ss_pred HHhC-CCCCCCc-hhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh--CC-CeEEEEE
Q 025642 64 EELG-LGPNGGL-IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS--RN-FNVCAVY 137 (250)
Q Consensus 64 ~~~~-L~~~g~~-~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~--~~-~~vi~v~ 137 (250)
+.+. .+.+--. ......+...+ ..++.+ +. +|++ +. +|+.....+. ++++++.+ .| .|.+.+-
T Consensus 153 e~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-l~--~p~~------t~Gldp~~~~~l~-~ller~~~~~~GsiT~~~tV 221 (347)
T 2obl_A 153 EYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-SG--EPDV------RGGFPPSVFSSLP-KLLERAGPAPKGSITAIYTV 221 (347)
T ss_dssp HHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-TT--CCCC------BTTBCHHHHHHHH-HHHTTCEECSSSEEEEEEEE
T ss_pred HHHHhccccHHHHHhhHHHHHHHH-HHHHHH-cC--CCCc------ccCCCHHHHHHHH-HHHHHHhCCCCCCeeeEEEE
Confidence 1111 1110000 01122222223 233333 34 6655 67 9999999988 89888864 35 3344445
Q ss_pred eccccccccHHHHHHhhHHhhhhHhHh
Q 025642 138 LLDSQFITDVTKFISGCMASLSAMVQL 164 (250)
Q Consensus 138 l~d~~~~~d~~~~~s~~l~~~~~~~~~ 164 (250)
++.+|.+. ..+++.+.....+.+.+
T Consensus 222 l~~thdl~--~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 222 LLESDNVN--DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp ECCSSCCC--CHHHHHHHHHCSEEEEB
T ss_pred EEeCCCCC--ChhhhheEEeeCcEEEE
Confidence 67889887 55677777766665533
No 114
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.90 E-value=1.7e-10 Score=98.79 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH---cCCCCCCceEEEeecC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMHIVNLD 39 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~---g~l~~~~G~i~i~~~d 39 (250)
-+++|+|||||||||+++.|+ |+..++.|++.+.+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 468999999999999999999 9999999998776643
No 115
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.90 E-value=6.4e-09 Score=94.61 Aligned_cols=124 Identities=13% Similarity=0.069 Sum_probs=71.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~ 83 (250)
.++|+|||||||||++++|.|+++|++|.|.+.|... +......+....+...+ ..++. ....
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e----~~~~~~~~~v~~v~~q~----~~~~~---------~~~~ 239 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE----LFLPDHPNHVHLFYPSE----AKEEE---------NAPV 239 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC----CCCTTCSSEEEEECC-----------------------C
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc----cCccccCCEEEEeecCc----ccccc---------cccc
Confidence 5789999999999999999999999999999986421 11100000000000000 00000 0111
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhh
Q 025642 84 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~ 158 (250)
.++..|+.++.. +|+.+++|||.. .+.. ++++.+.....+++.+. |. .++...+.++....
T Consensus 240 t~~~~i~~~l~~--~pd~~l~~e~r~------~~~~-~~l~~l~~g~~~~l~t~----H~-~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 240 TAATLLRSCLRM--KPTRILLAELRG------GEAY-DFINVAASGHGGSITSC----HA-GSCELTFERLALMV 300 (361)
T ss_dssp CHHHHHHHHTTS--CCSEEEESCCCS------THHH-HHHHHHHTTCCSCEEEE----EC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc--CCCEEEEcCchH------HHHH-HHHHHHhcCCCeEEEEE----CC-CCHHHHHHHHHHHH
Confidence 244777888877 999999999985 2334 56667754333433331 32 34566666665543
No 116
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.87 E-value=5.7e-10 Score=90.30 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=33.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
+++|+||||||||||+|+|+|.+ |++|+|.+.|.+.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 68999999999999999999999 9999999888765
No 117
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.86 E-value=7.6e-09 Score=91.75 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=56.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc-eEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
-+++++|||||||||+++.|++.+.+.+| +|.+.+.|+.. ....+. +..+.+..|+..... ..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r--------~~a~eq--L~~~~~~~gl~~~~~------~~ 169 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR--------IAAVEQ--LKTYAELLQAPLEVC------YT 169 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS--------TTHHHH--HHHHHTTTTCCCCBC------SS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc--------chHHHH--HHHHHHhcCCCeEec------CC
Confidence 36889999999999999999999988667 89999888732 112222 122233344432211 11
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc
Q 025642 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~~lllDEPt~ 109 (250)
...++..+++ .. +++++|+|+|+.
T Consensus 170 ~~~l~~al~~--~~--~~dlvIiDT~G~ 193 (296)
T 2px0_A 170 KEEFQQAKEL--FS--EYDHVFVDTAGR 193 (296)
T ss_dssp HHHHHHHHHH--GG--GSSEEEEECCCC
T ss_pred HHHHHHHHHH--hc--CCCEEEEeCCCC
Confidence 2234455553 35 899999997765
No 118
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.84 E-value=1.1e-08 Score=94.56 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=60.6
Q ss_pred EEEEEcCCCCcHHHHHHHH--HcCCCCC-----CceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCC---C
Q 025642 4 AQLVIGPAGSGKSTYCSSL--YRHCETV-----RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNG---G 73 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l--~g~l~~~-----~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g---~ 73 (250)
+++|+||||||||||++.+ .+..+++ ++.+++.+.+... ...+..+.+++++.+.. .
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~-------------~~rl~~~a~~~gl~~~~vlen 246 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR-------------PVRLVSIAQRFGLDPDDALNN 246 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC-------------HHHHHHHHHHTTCCHHHHHHT
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC-------------HHHHHHHHHHcCCChHhHhhc
Confidence 5789999999999999954 4555543 2356665543210 00122334444443210 0
Q ss_pred chh----hhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhH------------HHHHHHHHHHHHh-CCCeEEE
Q 025642 74 LIY----CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH------------VPVLRNFVDHLKS-RNFNVCA 135 (250)
Q Consensus 74 ~~~----~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~------------~~i~~~ll~~l~~-~~~~vi~ 135 (250)
..+ ..+.....+ ..+...+... +|+++++|+|+. ++.... ..++ +.++++.+ .|.+|++
T Consensus 247 i~~~~~~~~~~~~~~l-~~~~~~l~~~-~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il-~~L~~lake~gitVIl 323 (400)
T 3lda_A 247 VAYARAYNADHQLRLL-DAAAQMMSES-RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFM-RALQRLADQFGVAVVV 323 (400)
T ss_dssp EEEEECCSHHHHHHHH-HHHHHHHHHS-CEEEEEEETGGGGCC------CCHHHHHHHHHHHH-HHHHHHHHHHCCEEEE
T ss_pred EEEeccCChHHHHHHH-HHHHHHHHhc-CCceEEecchhhhCchhhcCccchHHHHHHHHHHH-HHHHHHHHHcCCEEEE
Confidence 000 001111111 1112222222 799999999999 775322 3445 55555654 4888887
Q ss_pred EE
Q 025642 136 VY 137 (250)
Q Consensus 136 v~ 137 (250)
|.
T Consensus 324 v~ 325 (400)
T 3lda_A 324 TN 325 (400)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 119
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.84 E-value=1e-08 Score=92.43 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~ 42 (250)
..++++|+|||||||+++.+++.+.+.+|+|.+.+.||..
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 5789999999999999999999999899999999999854
No 120
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.81 E-value=4.2e-09 Score=97.79 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G 31 (250)
|-++|+||||||||||++.++|...+..|
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 55799999999999999999999875433
No 121
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.80 E-value=1.1e-08 Score=96.72 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
.+++|+|||||||||+++.|+|++++.+|+|.+.+.|+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 57899999999999999999999999999999988775
No 122
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.77 E-value=3.2e-09 Score=87.67 Aligned_cols=124 Identities=15% Similarity=0.035 Sum_probs=63.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC-----CCCCceEEEeec----------CC-ccCC--------------CC-CCc--
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNL----------DP-AAEN--------------FD-YPV-- 49 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l-----~~~~G~i~i~~~----------dp-~~~~--------------~~-y~~-- 49 (250)
+.++|+|+||||||||++.++|.. .|+.|.+...+. |. .... +. |.+
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKR 106 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999988 777776654221 11 0000 00 000
Q ss_pred -c-------cChhh-----hhhHHHHHHHhCCCCCCCchhhhhhhhh--hHH-HHHHHHHhcCCCCCEEEEeCCCc-cCH
Q 025642 50 -A-------MDIRE-----LISLEDVMEELGLGPNGGLIYCMEHLED--NLD-DWLAEELDNYLDDDYLVFDCPGQ-IEL 112 (250)
Q Consensus 50 -~-------~~i~~-----~i~~~~vm~~~~L~~~g~~~~~~~~~~~--~ls-~~la~aL~~~~~~~~lllDEPt~-LD~ 112 (250)
. .++.. ...+.++++..++.... .....+.... ..+ ...+++++. +++.++.|||++ +|.
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~nK~D~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sal~~ 183 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV-LLTKADKLASGARKAQLNMVREAVL--AFNGDVQVETFSSLKK 183 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEE-EEECGGGSCHHHHHHHHHHHHHHHG--GGCSCEEEEECBTTTT
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEE-EEecccCCCchhHHHHHHHHHHHHH--hcCCCCceEEEeecCC
Confidence 0 00000 00133344444443210 0001222222 121 456777777 788889999999 999
Q ss_pred HhHHHHHHHHHHHHHhCC
Q 025642 113 FTHVPVLRNFVDHLKSRN 130 (250)
Q Consensus 113 ~~~~~i~~~ll~~l~~~~ 130 (250)
....+++ +.+.++.+++
T Consensus 184 ~~~~~l~-~~l~~~~~~~ 200 (210)
T 1pui_A 184 QGVDKLR-QKLDTWFSEM 200 (210)
T ss_dssp BSHHHHH-HHHHHHHC--
T ss_pred CCHHHHH-HHHHHHHhhc
Confidence 9999988 6666655444
No 123
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.77 E-value=4.8e-07 Score=72.89 Aligned_cols=121 Identities=18% Similarity=0.215 Sum_probs=69.2
Q ss_pred CCCEEEEeCCCc----cCHHhHHHHHHHHHHHHH-hCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeec
Q 025642 98 DDDYLVFDCPGQ----IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (250)
Q Consensus 98 ~~~~lllDEPt~----LD~~~~~~i~~~ll~~l~-~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vl 172 (250)
+.++.+.|.||- .+...+.. .+.+..... ......++++++|+..-...... .+ ....-..+.|.+-|+
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~---~~~~~~~~~p~i~v~ 140 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERML-WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL--MM---VEWMKSLNIPFTIVL 140 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHH-HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HH---HHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCccccCChhhHHH-HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHH--HH---HHHHHHcCCCEEEEE
Confidence 346889999994 22222222 224444332 22333445566775432221111 11 111223478999999
Q ss_pred CchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHhhhhh
Q 025642 173 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSMVWCL 248 (250)
Q Consensus 173 sK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 248 (250)
||+|+.+.. ..+ ...+.+.+....++-..|++++..+.+.+..++..+.+.+
T Consensus 141 nK~Dl~~~~-~~~-----------------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 141 TKMDKVKMS-ERA-----------------------KKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp ECGGGSCGG-GHH-----------------------HHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EChhcCChH-HHH-----------------------HHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHh
Confidence 999997533 111 1122333445566778999999999999999999887765
No 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.75 E-value=6.7e-09 Score=96.56 Aligned_cols=49 Identities=14% Similarity=0.079 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH-HHHhCCCeEEEE
Q 025642 85 LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD-HLKSRNFNVCAV 136 (250)
Q Consensus 85 ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~-~l~~~~~~vi~v 136 (250)
....++++|.. +.+++++|+|+. +.......+. +.++ .+...|..|+.+
T Consensus 165 ~Dieilk~L~~--~~~vI~Vi~KtD~Lt~~E~~~l~-~~I~~~L~~~gi~I~~i 215 (427)
T 2qag_B 165 LDLVTMKKLDS--KVNIIPIIAKADAISKSELTKFK-IKITSELVSNGVQIYQF 215 (427)
T ss_dssp HHHHHHHHTCS--CSEEEEEESCGGGSCHHHHHHHH-HHHHHHHBTTBCCCCCC
T ss_pred HHHHHHHHHhh--CCCEEEEEcchhccchHHHHHHH-HHHHHHHHHcCCcEEec
Confidence 34788888886 899999999999 9888777777 5555 487778777533
No 125
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.74 E-value=2e-07 Score=79.07 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETV 29 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~ 29 (250)
+-++|+|++|+|||||++.+.|...+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~ 56 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFH 56 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCc
Confidence 568999999999999999999865443
No 126
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.73 E-value=2.6e-08 Score=84.05 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCc-c--CHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 98 DDDYLVFDCPGQ-I--ELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 98 ~~~~lllDEPt~-L--D~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+++++++|+|+. . |.......+..+.+.+++.|.++++++
T Consensus 128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~ 170 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVS 170 (247)
T ss_dssp TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 799999999999 5 555556666566666667788887764
No 127
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.72 E-value=5.7e-10 Score=99.60 Aligned_cols=96 Identities=19% Similarity=0.122 Sum_probs=59.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEee-cCCc------c-CCCCCCcccChhhhhhHHHHHHHhCCCCCCCch
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA------A-ENFDYPVAMDIRELISLEDVMEELGLGPNGGLI 75 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~-~dp~------~-~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~ 75 (250)
+++|+||||||||||+++|+|++ +|+|.... +++. . +++.+.++.+ + .+.+.++.+ + |++ .-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~--~--~~~~~i~~~-L-~~g-ld 197 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWLASLADTRAALVDDAT--H--ACWRYFDTY-L-RNA-LD 197 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGGGGGTTCSCEEEEEEC--H--HHHHHHHHT-T-TGG-GG
T ss_pred EEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccccccccHHHHhhccCcccc--H--HHHHHHHHH-h-Hcc-CC
Confidence 58999999999999999999998 89997532 3321 1 1333322111 1 244555552 1 111 00
Q ss_pred hhhhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025642 76 YCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (250)
Q Consensus 76 ~~~~~~~-~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~ 119 (250)
...... +++ . |++++. +|++|| |+ ||+.+...+.
T Consensus 198 -g~~LSgGqkQ--R-ARAll~--~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 198 -GYPVSIDRKH--K-AAVQIK--APPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp -TCCEECCCSS--C-CCCEEC--CCCEEE----EESSCSTTCGGGG
T ss_pred -ccCcCHHHHH--H-HHHHhC--CCCEEE----ECCCCHHHHHHHH
Confidence 001111 122 2 899998 999999 88 9999886654
No 128
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.67 E-value=1.7e-06 Score=71.73 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=65.3
Q ss_pred CCCEEEEeCCCccCH---HhHHHHHHHHHHH-HHhCCCeEEEEEeccccc-cccHHHHHHhhHHhhhhHhHhcCCeeeec
Q 025642 98 DDDYLVFDCPGQIEL---FTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNIL 172 (250)
Q Consensus 98 ~~~~lllDEPt~LD~---~~~~~i~~~ll~~-l~~~~~~vi~v~l~d~~~-~~d~~~~~s~~l~~~~~~~~~~~p~v~vl 172 (250)
+.++.|.|.||.-+. ...++.++.++.. +......-++++++|+.. ..+....+ ....-..+.|.+-|+
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~------~~~l~~~~~p~i~v~ 151 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRM------IEWFAPTGKPIHSLL 151 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHH------HHHHGGGCCCEEEEE
T ss_pred CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHH------HHHHHhcCCCEEEEE
Confidence 568999999996321 0001111133333 222222223455567654 22221111 111223678999999
Q ss_pred CchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHH--hhcCCceeEEeecCCHHHHHHHHHHhhhhh
Q 025642 173 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELV--DEYSMVSFMPLDLRKESRYFLYLSSMVWCL 248 (250)
Q Consensus 173 sK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i--~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 248 (250)
||+|+.... ..... ..++.+.+.... ....-..|+|++..+.+.+..++..+.+.+
T Consensus 152 nK~Dl~~~~-~~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 152 TKCDKLTRQ-ESINA-------------------LRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp ECGGGSCHH-HHHHH-------------------HHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eccccCChh-hHHHH-------------------HHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 999997643 11110 011111111111 112557899999999999999998887654
No 129
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.67 E-value=1.5e-07 Score=87.59 Aligned_cols=152 Identities=18% Similarity=0.178 Sum_probs=83.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
+.+++++||+||||||++..|++++.+.+++|.+.+.|+.. +. ..+. +..+-+..++.-..... ....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r------~~--a~eq--L~~~~~~~gv~~~~~~~--~~dp 164 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR------PA--AYDQ--LLQLGNQIGVQVYGEPN--NQNP 164 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC------HH--HHHH--HHHHHHTTTCCEECCTT--CSCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc------hh--HHHH--HHHHHHhcCCceeeccc--cCCH
Confidence 35788999999999999999999999999999999888532 10 1111 22233444442211000 0001
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc----cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHh
Q 025642 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ----IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~~lllDEPt~----LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~ 157 (250)
..-....++.+... +++++|+|+|+. .|.....++. .+.+.++ .. .+++ ++|++.-.+....+.
T Consensus 165 ~~i~~~al~~a~~~--~~DvvIIDTaGr~~~~~d~~lm~el~-~i~~~~~-pd-~vlL--VlDa~~gq~a~~~a~----- 232 (433)
T 3kl4_A 165 IEIAKKGVDIFVKN--KMDIIIVDTAGRHGYGEETKLLEEMK-EMYDVLK-PD-DVIL--VIDASIGQKAYDLAS----- 232 (433)
T ss_dssp HHHHHHHHHHTTTT--TCSEEEEEECCCSSSCCTTHHHHHHH-HHHHHHC-CS-EEEE--EEEGGGGGGGHHHHH-----
T ss_pred HHHHHHHHHHHHhc--CCCEEEEECCCCccccCCHHHHHHHH-HHHHhhC-Cc-ceEE--EEeCccchHHHHHHH-----
Confidence 11111334444444 899999999997 3444444433 4444442 22 2333 366665333322211
Q ss_pred hhhHhH-hcCCeeeecCchhhhcc
Q 025642 158 LSAMVQ-LELPHVNILSKMDLVTN 180 (250)
Q Consensus 158 ~~~~~~-~~~p~v~vlsK~Dl~~~ 180 (250)
.+. .-.+..-|+||.|.-.+
T Consensus 233 ---~f~~~~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 233 ---RFHQASPIGSVIITKMDGTAK 253 (433)
T ss_dssp ---HHHHHCSSEEEEEECGGGCSC
T ss_pred ---HHhcccCCcEEEEeccccccc
Confidence 111 11345568899997543
No 130
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.67 E-value=3.8e-08 Score=87.28 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC-CCCCCceEEEeecC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLD 39 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~-l~~~~G~i~i~~~d 39 (250)
|-++|+||||||||||++.|.|. ..|.+| +.+.|.+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~ 55 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEK 55 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC----------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcc
Confidence 56799999999999999999997 788888 6655544
No 131
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.64 E-value=1.2e-07 Score=82.23 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+-++++|++|||||||++.++|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999999999999998853
No 132
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.63 E-value=6.6e-09 Score=98.03 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=34.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
+++|+||||||||||+++|+|+++|++|+|.+.|.+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 5799999999999999999999999999999988765
No 133
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.62 E-value=8.7e-08 Score=78.45 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-----------CCceEEEeec
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----------VRRTMHIVNL 38 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----------~~G~i~i~~~ 38 (250)
+.++|+|+||||||||++.++|...+ ..|.+.+.|.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~ 76 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 76 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE
Confidence 67899999999999999999998765 4677777664
No 134
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.58 E-value=4.1e-07 Score=82.23 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=33.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE 43 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~ 43 (250)
.+.++|+|++|+||||+++.+++.+...+.+|.+...||...
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST 120 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 367899999999999999999988776677899988888543
No 135
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.58 E-value=6.1e-07 Score=79.48 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
.+++++|+||+||||++..+++.+.+.+++|.+.+.|+.... ..+. +..+.++.|+.-..+.. -....
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~--------a~~q--l~~~~~~~~v~v~~~~~--~~~p~ 166 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPA--------ALEQ--LQQLGQQIGVPVYGEPG--EKDVV 166 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSH--------HHHH--HHHHHHHHTCCEECCTT--CCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHH--------HHHH--HHHHhccCCeEEEecCC--CCCHH
Confidence 467889999999999999999999988999999998874311 0111 22334455553111000 00011
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCccC
Q 025642 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIE 111 (250)
Q Consensus 83 ~~ls~~la~aL~~~~~~~~lllDEPt~LD 111 (250)
.-+...+...-.. +.+++|+|+|+.+.
T Consensus 167 ~~~~~~l~~~~~~--~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 167 GIAKRGVEKFLSE--KMEIIIVDTAGRHG 193 (297)
T ss_dssp HHHHHHHHHHHHT--TCSEEEEECCCSCC
T ss_pred HHHHHHHHHHHhC--CCCEEEEeCCCCcc
Confidence 1111223322224 78999999999965
No 136
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.57 E-value=4e-06 Score=67.75 Aligned_cols=121 Identities=11% Similarity=0.086 Sum_probs=62.8
Q ss_pred CCCEEEEeCCCccC----HHhHHHHHHHHHHHHH-hCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeec
Q 025642 98 DDDYLVFDCPGQIE----LFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (250)
Q Consensus 98 ~~~~lllDEPt~LD----~~~~~~i~~~ll~~l~-~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vl 172 (250)
+.++.+.|.||--+ ...+.. .+.+..... .....-++++++|+..-...... .+ ....-..+.|.+-|+
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---~~--~~~~~~~~~p~i~v~ 141 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREA-WGRMIETYITTREELKAVVQIVDLRHAPSNDDV---QM--YEFLKYYGIPVIVIA 141 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHH-HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH---HH--HHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCccccCHHHHHH-HHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHH---HH--HHHHHHcCCCEEEEE
Confidence 34789999999421 111222 223333332 22212234445665432222111 11 111123678999999
Q ss_pred CchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHhhhhh
Q 025642 173 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSMVWCL 248 (250)
Q Consensus 173 sK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 248 (250)
||+|+.+.. ..+. ..+.+.+.+....-..|.+++..+.+.+..++..+.+.+
T Consensus 142 nK~Dl~~~~-~~~~-----------------------~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 142 TKADKIPKG-KWDK-----------------------HAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp ECGGGSCGG-GHHH-----------------------HHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ECcccCChH-HHHH-----------------------HHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 999997643 1111 011112212222347899999999999999888876544
No 137
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.57 E-value=3.5e-08 Score=80.43 Aligned_cols=35 Identities=31% Similarity=0.314 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (250)
-+++|+|||||||||+++.|+|. +..|.|.+.+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~ 44 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDD 44 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccc
Confidence 46899999999999999999997 678999988754
No 138
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.56 E-value=3e-08 Score=88.10 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC--CCCceEEEee
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVN 37 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~--~~~G~i~i~~ 37 (250)
.+++|+|||||||||++++|+|++. |++|+|.+.+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~ 117 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELIT 117 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEe
Confidence 6899999999999999999999988 9999999933
No 139
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.56 E-value=1.8e-07 Score=84.71 Aligned_cols=89 Identities=17% Similarity=0.177 Sum_probs=53.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~ 83 (250)
++.|.||||||||||+..++......+|.+.+...+.. ..+ . ..+++|+.+..-.+.. .....
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-----~~~------~-----~a~~lG~~~~~l~i~~-~~~~e 125 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-----LDP------E-----YAKKLGVDTDSLLVSQ-PDTGE 125 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-----CCH------H-----HHHHTTCCGGGCEEEC-CSSHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-----cCH------H-----HHHHcCCCHHHeEEec-CCCHH
Confidence 57899999999999998888766556677777654321 110 0 1344454322100000 01122
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCc-c
Q 025642 84 NLDDWLAEELDNYLDDDYLVFDCPGQ-I 110 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~~~lllDEPt~-L 110 (250)
+. ..+++++....+|+++++|+|+. .
T Consensus 126 ~~-l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 126 QA-LEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HH-HHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred HH-HHHHHHHHhcCCCCEEEEcChHhhc
Confidence 23 45666666422699999999999 5
No 140
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.55 E-value=5.5e-07 Score=70.32 Aligned_cols=110 Identities=12% Similarity=0.072 Sum_probs=58.5
Q ss_pred CCCEEEEeCCCccCHHh-HHHHHHHHHHHHHhCCCeEEEEEeccccc-cccHHHHHHhhHHhhhhHhHhcCCeeeecCch
Q 025642 98 DDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKM 175 (250)
Q Consensus 98 ~~~~lllDEPt~LD~~~-~~~i~~~ll~~l~~~~~~vi~v~l~d~~~-~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK~ 175 (250)
+.++.+.|.||+-+... ..... .......+....++ +++|... .......+...+ -..+.|.+-|.||+
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~~~~~~~~~~~i--~v~d~~~~~~~~~~~~~~~~------~~~~~p~ilv~nK~ 118 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQ-EKVDRALEDAEVVL--FAVDGRAELTQADYEVAEYL------RRKGKPVILVATKV 118 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHH-HHHHHHTTTCSEEE--EEEESSSCCCHHHHHHHHHH------HHHTCCEEEEEECC
T ss_pred CceEEEEECCCCCCccchHHHHH-HHHHHHHHhCCEEE--EEEECCCcccHhHHHHHHHH------HhcCCCEEEEEECc
Confidence 34688999999843211 11111 22222222222333 3455443 332222222221 12578999999999
Q ss_pred hhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHhhhh
Q 025642 176 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSMVWC 247 (250)
Q Consensus 176 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 247 (250)
|+.+...... .+ . +++...|.+.+..+.+.+..+...+.+.
T Consensus 119 Dl~~~~~~~~--------------------~~----------~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 119 DDPKHELYLG--------------------PL----------Y-GLGFGDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp CSGGGGGGCG--------------------GG----------G-GGSSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred ccccchHhHH--------------------HH----------H-hCCCCCeEEEecccCCChHHHHHHHHHh
Confidence 9965421111 01 1 2444578888888888888888777654
No 141
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.54 E-value=2.3e-08 Score=90.09 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~ 42 (250)
.+++|+||||||||||++.++|++.|++|+|.+.+.||..
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 5789999999999999999999999999999999999854
No 142
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.50 E-value=5.8e-08 Score=79.28 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
|.-+++|+|||||||||+++.|++ +.+|.+.+.+.+.
T Consensus 1 mg~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 1 MKKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII 37 (189)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence 556789999999999999999997 5678898887554
No 143
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.50 E-value=3.5e-08 Score=80.89 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~ 32 (250)
+++|+|||||||||++++|+|++++..|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 57899999999999999999998754443
No 144
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.49 E-value=5.3e-07 Score=81.46 Aligned_cols=30 Identities=27% Similarity=0.239 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc--CCCCCCceE
Q 025642 4 AQLVIGPAGSGKSTYCSSLYR--HCETVRRTM 33 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g--~l~~~~G~i 33 (250)
.++|+|++||||||+++.+.| +++...|.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 578999999999999999999 556665544
No 145
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.49 E-value=2.4e-07 Score=80.83 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
++-++++|++|||||||++.+.|-
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999875
No 146
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.48 E-value=1.6e-07 Score=84.16 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~ 41 (250)
-+++++||||+||||++..|++.+.+.+|+|.+.+.|+.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 478899999999999999999999999999999998863
No 147
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.47 E-value=4.5e-06 Score=65.00 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++++|++|+|||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 6789999999999999999986
No 148
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.45 E-value=8.9e-08 Score=85.94 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=34.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC--CCCceEEEeecCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP 40 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~--~~~G~i~i~~~dp 40 (250)
+++++|+|||||||||+++.|.+++. +.+|.+.+.+.|.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 57999999999999999999999987 5688888887774
No 149
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.44 E-value=8.5e-08 Score=84.91 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE---eecCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i---~~~dp 40 (250)
+++++||||||||||+++|+|+.+|++|+|.+ .|.+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC-------------C
T ss_pred eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCc
Confidence 57899999999999999999999999999998 66554
No 150
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.44 E-value=1.1e-05 Score=75.19 Aligned_cols=102 Identities=16% Similarity=0.116 Sum_probs=60.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
+.+++++|++||||||++..|+.++...+.+|.+...|+.... ..+. +..+-+..++.-..... -...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~a--------a~eq--L~~~~~~~gvpv~~~~~--~~dp 167 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG--------AYHQ--LRQLLDRYHIEVFGNPQ--EKDA 167 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTH--------HHHH--HHHHHGGGTCEEECCTT--CCCH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh--------HHHH--HHHHHHhcCCcEEecCC--CCCH
Confidence 4688999999999999999999998887888998887763210 0111 22233334432110000 0011
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc--cCHHhHHH
Q 025642 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVP 117 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~~lllDEPt~--LD~~~~~~ 117 (250)
..-.+..+..+-.. +.+++|+|+|+. .|.....+
T Consensus 168 ~~i~~~al~~a~~~--~~DvVIIDTaGrl~~d~~lm~e 203 (443)
T 3dm5_A 168 IKLAKEGVDYFKSK--GVDIIIVDTAGRHKEDKALIEE 203 (443)
T ss_dssp HHHHHHHHHHHHHT--TCSEEEEECCCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCEEEEECCCcccchHHHHHH
Confidence 11112334444444 689999999997 44444433
No 151
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.44 E-value=1.3e-08 Score=87.05 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
++|+|||||||||++++|+|++.|++|.|.+.|.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 468999999999999999999999999999988664
No 152
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.44 E-value=9.2e-08 Score=88.77 Aligned_cols=37 Identities=32% Similarity=0.344 Sum_probs=33.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
+++|+|||||||||++++|.|++.+.+|+|.+.+.++
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 5789999999999999999999999999999987543
No 153
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.43 E-value=1.2e-06 Score=68.06 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 66899999999999999999874
No 154
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.43 E-value=2.5e-08 Score=81.58 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCC---CceEEEeecC
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLD 39 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~i~i~~~d 39 (250)
|.-.++|+|++|||||||++.|.|+++|. .|.|.+++.+
T Consensus 1 m~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 1 MSLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp --CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 45578999999999999999999999998 7999887755
No 155
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.43 E-value=5.4e-08 Score=81.15 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC---CceEEEeecC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLD 39 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~i~i~~~d 39 (250)
.+++|+||||||||||++.|+|+++|. .|.|.++|..
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 578999999999999999999999863 5666666544
No 156
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.43 E-value=6.9e-07 Score=79.21 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
-.++|+|++|+|||||++.+.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35889999999999999999874
No 157
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.42 E-value=7.4e-07 Score=79.89 Aligned_cols=115 Identities=14% Similarity=0.145 Sum_probs=64.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC-ceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCC-CCchhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPN-GGLIYCMEHL 81 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~-G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~-g~~~~~~~~~ 81 (250)
.++|.||+|+||||+++.+++.+.+.. ..+...+-.. ..+..+. +..+.+.++.... .+. .....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~---------~~~~~~~--~~~l~~~l~~~~~~~~~--~~~~~ 112 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI---------YRNFTAI--IGEIARSLNIPFPRRGL--SRDEF 112 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT---------CCSHHHH--HHHHHHHTTCCCCSSCC--CHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc---------CCCHHHH--HHHHHHHhCccCCCCCC--CHHHH
Confidence 688999999999999999999877652 3333333111 0111222 4455566654321 110 01111
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHh---CCCeEEEE
Q 025642 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS---RNFNVCAV 136 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~---~~~~vi~v 136 (250)
. ..+...+....+|.++++||+..++......+. ++++.+.. .+..++++
T Consensus 113 ~----~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~-~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 113 L----ALLVEHLRERDLYMFLVLDDAFNLAPDILSTFI-RLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp H----HHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHH-HHTTCHHHHSSCCEEEEEE
T ss_pred H----HHHHHHHhhcCCeEEEEEECccccchHHHHHHH-HHHHhCCCCCcCCEEEEEE
Confidence 1 222223322225789999999999877766655 55555543 35555444
No 158
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.42 E-value=2.2e-06 Score=75.72 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
..++|+|+||+|||||++.+.|.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999985
No 159
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.41 E-value=8e-06 Score=75.86 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~ 41 (250)
.+++++|++||||||++..+++++.+.+++|.+.+.|+.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 468889999999999999999999999999999998863
No 160
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.41 E-value=4.6e-06 Score=66.43 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56899999999999999999863
No 161
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.41 E-value=6.4e-08 Score=89.79 Aligned_cols=60 Identities=10% Similarity=0.155 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHH
Q 025642 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (250)
Q Consensus 87 ~~la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~ 156 (250)
..+++++.. .|.++++ + +|+... ..+..+.+.+++.+.+++. ++++.-.....++..+.-
T Consensus 261 ~~la~aL~~--~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~---iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 261 GAYDPALLR--RPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLP---VSALTGAGLPALKEALHA 321 (416)
T ss_dssp HHHCHHHHH--SCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEE---CCTTTCTTHHHHHHHHHH
T ss_pred HHHhHHhhc--CCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEE---EECCCccCHHHHHHHHHH
Confidence 677788888 9999999 6 999877 5553555666556766653 455555555666554443
No 162
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.41 E-value=9.3e-07 Score=71.12 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.++|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999974
No 163
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.41 E-value=2.9e-07 Score=73.51 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=39.1
Q ss_pred HHHHHhcCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 89 LAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 89 la~aL~~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+|++++. +|+++|+||||+ +|+.++..+. ++++++++.|.+++++.
T Consensus 74 laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 74 MSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILVS 120 (148)
T ss_dssp HHHHHHS--SCSEEEEESCSCTTCHHHHHHHH-HHHHHTGGGSSEEEEEE
T ss_pred HHHHHcC--CCCEEEEECCCccCCHHHHHHHH-HHHHHHHccCCEEEEEE
Confidence 3488888 999999999999 9999999988 88888866677876664
No 164
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.39 E-value=1e-07 Score=79.03 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
.+++|+|+|||||||+++.+++.+++.+|+|.+.+.|.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 68999999999999999999999988899999888775
No 165
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.38 E-value=6.1e-06 Score=64.48 Aligned_cols=59 Identities=12% Similarity=0.185 Sum_probs=38.6
Q ss_pred hcCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHH
Q 025642 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSS 243 (250)
Q Consensus 164 ~~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~ 243 (250)
-+.|.+-|+||+|+.+.. .. .. +.+.++.+.++-..|.+.+..+.+.+..++..
T Consensus 107 ~~~piilv~nK~Dl~~~~-~~------~~-------------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 107 EDVPMILVGNKCDLEDER-VV------GK-------------------EQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp SCCCEEEEEECTTCGGGC-CS------CH-------------------HHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred CCCcEEEEEECccccccc-cC------CH-------------------HHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 378999999999996532 10 00 01111223344578999999999999988887
Q ss_pred hhhhh
Q 025642 244 MVWCL 248 (250)
Q Consensus 244 ~~~~~ 248 (250)
+.+.+
T Consensus 161 l~~~i 165 (167)
T 1c1y_A 161 LVRQI 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 166
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.37 E-value=1.8e-06 Score=68.62 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|+.|||||||++.+.+-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 167
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.37 E-value=1e-07 Score=79.17 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
.++|+||||||||||++.|.|+++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 579999999999999999999875
No 168
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.35 E-value=1.9e-07 Score=76.79 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeec
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~ 38 (250)
-+++|+|||||||||++++|+|+++ .+.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~ 39 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA----EIKISIS 39 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS----SEEECCC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC----CeEEece
Confidence 4689999999999999999999864 4555543
No 169
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.35 E-value=2.2e-06 Score=77.83 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=53.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~ 83 (250)
++.|.||||||||||+..++....+.+|.|.+.+...... + ...+++++.+..-.+.. .....
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~-----~-----------~ra~rlgv~~~~l~i~~-~~~~e 125 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD-----P-----------VYAKNLGVDLKSLLISQ-PDHGE 125 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-----H-----------HHHHHHTCCGGGCEEEC-CSSHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc-----h-----------HHHHHcCCchhhhhhhh-ccCHH
Confidence 6789999999999999999998887888886654321110 0 03455565443211111 11122
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCc
Q 025642 84 NLDDWLAEELDNYLDDDYLVFDCPGQ 109 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~~~lllDEPt~ 109 (250)
.. .++++.+.....++++++|+-+.
T Consensus 126 ~~-l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 126 QA-LEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HH-HHHHHHHHHTSCCSEEEEECTTT
T ss_pred HH-HHHHHHHhhhcCCCeEEehHhhh
Confidence 23 44555554322799999998666
No 170
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.34 E-value=6.5e-06 Score=64.14 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|+.|+|||||++.+.+-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 66899999999999999999863
No 171
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.34 E-value=3.2e-06 Score=73.04 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
-++++|++|||||||++.+.|-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999875
No 172
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.33 E-value=8.9e-07 Score=71.14 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+-++|+|++|+|||||++.+++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999853
No 173
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.32 E-value=9.8e-06 Score=70.70 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
.+-++++|++|+|||||++.++|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 467899999999999999999985
No 174
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.32 E-value=2.9e-07 Score=87.47 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=33.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (250)
+++|+|||||||||++++|+|+++|++|.|.+.+.+
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 579999999999999999999999999999987643
No 175
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.32 E-value=1.7e-07 Score=83.61 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC--------CCCCceEEEeecCCc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC--------ETVRRTMHIVNLDPA 41 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l--------~~~~G~i~i~~~dp~ 41 (250)
-+++|+|+|||||||+++.|.|.. .++.|+|.++|.++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 368899999999999999999987 789999999987653
No 176
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.31 E-value=3e-07 Score=81.50 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE---eecCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i---~~~dp 40 (250)
-+++++||||||||||+++|. ..+|..|+|.+ .|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHT 205 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------C
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCc
Confidence 367999999999999999999 99999999998 77654
No 177
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.30 E-value=1.5e-05 Score=64.76 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|+.|+|||||++.+.+-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 178
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.30 E-value=7.3e-07 Score=69.97 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.+.+-
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 179
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.29 E-value=5.3e-06 Score=65.74 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 180
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.28 E-value=4.5e-06 Score=71.50 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.|-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 56899999999999999999984
No 181
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.28 E-value=2.4e-06 Score=73.92 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.++|-
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 56899999999999999999874
No 182
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.28 E-value=2.3e-07 Score=78.31 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=16.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-cCCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLY-RHCET 28 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~-g~l~~ 28 (250)
-+++|+|||||||||+++.|+ |++++
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----C
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 368999999999999999999 99854
No 183
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.27 E-value=4.5e-07 Score=82.49 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCceEEEe-ec
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIV-NL 38 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~i~i~-~~ 38 (250)
+++|+||||||||||+++|+|... +..|+|.+. |.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~ 253 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGL 253 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSSCCCCC--------
T ss_pred EEEEECCCCccHHHHHHHHhccccccccCCccccCCC
Confidence 579999999999999999999999 999999886 54
No 184
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.27 E-value=6.7e-06 Score=65.13 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|+.|+|||||++.+.+-
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999875
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.26 E-value=3e-07 Score=74.96 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCceEEEeecCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDP 40 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~dp 40 (250)
-.++|+||||||||||++.|.+.+++ ..|.|......|
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~ 44 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP 44 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCC
Confidence 36899999999999999999998764 456666554444
No 186
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.26 E-value=2.2e-06 Score=69.07 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|+.|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 67899999999999999999873
No 187
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.25 E-value=3.9e-06 Score=67.81 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+-++++|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999998753
No 188
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.25 E-value=4e-07 Score=75.22 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (250)
-+++|+|||||||||+++.|++.+ |.+.+.+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~ 62 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET----GLEFAEADA 62 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccc
Confidence 368999999999999999999976 788887654
No 189
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.24 E-value=1.1e-05 Score=73.44 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.++|+|++|||||||++.++|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48899999999999999999863
No 190
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.24 E-value=5.4e-07 Score=74.02 Aligned_cols=29 Identities=24% Similarity=0.427 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G 31 (250)
.+++|+|||||||||+++.|++.+.|+.|
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 47899999999999999999999877555
No 191
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.24 E-value=3.2e-05 Score=62.02 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
+-++|+|++|+|||||++.+.|...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5689999999999999999998654
No 192
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.24 E-value=2.9e-06 Score=85.58 Aligned_cols=113 Identities=14% Similarity=0.092 Sum_probs=73.3
Q ss_pred HHcCCCCCCceEEEeecCCcc-------CC------CCCCc-ccCh-----hhhhhHHHHHHHhCCCCCCCchhhhhhh-
Q 025642 22 LYRHCETVRRTMHIVNLDPAA-------EN------FDYPV-AMDI-----RELISLEDVMEELGLGPNGGLIYCMEHL- 81 (250)
Q Consensus 22 l~g~l~~~~G~i~i~~~dp~~-------~~------~~y~~-~~~i-----~~~i~~~~vm~~~~L~~~g~~~~~~~~~- 81 (250)
..+-++|..|+|.+.|++... ++ +.+.. ...+ .+.-...+.+..+|++............
T Consensus 388 ~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~~~~LSG 467 (916)
T 3pih_A 388 GGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLSG 467 (916)
T ss_dssp CSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSBGGGCCH
T ss_pred ccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCCcccCCH
Confidence 344578889999999876521 11 11111 0110 1111244567778886431111111222
Q ss_pred hhhHHHHHHHHHhcCCCCC--EEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 82 EDNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~--~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
.++++++||++|.. +|+ ++||||||+ ||+.....++ ++++++++.|.+|++|.
T Consensus 468 Ge~QRv~LAraL~~--~p~~~lllLDEPT~gLD~~~~~~l~-~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 468 GESQRIRLATQIGS--GLTGVIYVLDEPTIGLHPRDTERLI-KTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHHHHHHHHT--TCCSCEEEEECTTTTCCGGGHHHHH-HHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHHHHHHhh--CCCCcEEEEECCccCCCHHHHHHHH-HHHHHHHhcCCEEEEEe
Confidence 23455999999998 666 999999999 9999999999 99999987799987773
No 193
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.24 E-value=3.6e-05 Score=60.19 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++++|+.|+|||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5689999999999999999987
No 194
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.23 E-value=2.3e-06 Score=79.60 Aligned_cols=152 Identities=17% Similarity=0.186 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
.+++++|++|+||||++..|++.+...+.+|.+...||..... + +. +..+.+..|+......... ....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a-~-------~q--L~~~~~~~gv~v~~~~~~~-~dp~ 168 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAA-Y-------EQ--LKQLAEKIHVPIYGDETRT-KSPV 168 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTG-G-------GS--SHHHHHHSSCCEECCSSSC-CSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchH-H-------HH--HHHhhhccCcceEecCCCC-CCHH
Confidence 4688999999999999999999988777789999988743211 0 11 1223344444311100000 0000
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHh
Q 025642 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (250)
Q Consensus 83 ~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (250)
.-....+... . +.+++|+|+|+.+.. ....+ .-+..+...-..-.+++++|+..-.+.... ...+
T Consensus 169 ~i~~~~l~~~--~--~~D~vIIDT~G~~~~--~~~l~-~~l~~i~~~~~~d~vllVvda~~g~~~~~~--------~~~~ 233 (432)
T 2v3c_C 169 DIVKEGMEKF--K--KADVLIIDTAGRHKE--EKGLL-EEMKQIKEITNPDEIILVIDGTIGQQAGIQ--------AKAF 233 (432)
T ss_dssp TTHHHHHHTT--S--SCSEEEEECCCSCSS--HHHHH-HHHHHTTSSSCCSEEEEEEEGGGGGGHHHH--------HHHH
T ss_pred HHHHHHHHHh--h--CCCEEEEcCCCCccc--cHHHH-HHHHHHHHHhcCcceeEEeeccccHHHHHH--------HHHH
Confidence 0111223322 4 789999999998543 12233 222233221112223344565432221111 1222
Q ss_pred HhcC-C-eeeecCchhhhcc
Q 025642 163 QLEL-P-HVNILSKMDLVTN 180 (250)
Q Consensus 163 ~~~~-p-~v~vlsK~Dl~~~ 180 (250)
.-.. | ..-|+||.|...+
T Consensus 234 ~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 234 KEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp HTTSCSCEEEEEECSSSCST
T ss_pred hhcccCCeEEEEeCCCCccc
Confidence 3334 5 6678999998654
No 195
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.22 E-value=3.9e-06 Score=67.56 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+-++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 668999999999999999999853
No 196
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.22 E-value=3.9e-05 Score=61.29 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.+.+-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 45789999999999999999873
No 197
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.21 E-value=5.9e-06 Score=68.21 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+-++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999998753
No 198
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.20 E-value=1.6e-05 Score=68.86 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
|-++|+|++|+|||||++.|.+-
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999998763
No 199
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.20 E-value=2.4e-07 Score=82.58 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i 35 (250)
+++|+||||||||||+++|.|..++..|+|.+
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-----------
T ss_pred EEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 57999999999999999999999999999987
No 200
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.19 E-value=1.5e-07 Score=81.07 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH---cCCCCCCceEE
Q 025642 3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMH 34 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~---g~l~~~~G~i~ 34 (250)
.+++|+|||||||||+++.|+ |+..+++|.++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 578999999999999999999 99888888887
No 201
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.18 E-value=1.9e-05 Score=66.03 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++|+|++|+|||||++.+.+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6789999999999999999986
No 202
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.18 E-value=6.3e-07 Score=71.72 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~ 28 (250)
|...++|+|||||||||+++.|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467899999999999999999997643
No 203
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.16 E-value=1e-06 Score=72.76 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHc
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g 24 (250)
|+++++|+|||||||||+++.+++
T Consensus 1 m~~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 1 MTYIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 678899999999999999999998
No 204
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.15 E-value=1.5e-05 Score=63.60 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999853
No 205
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.15 E-value=9e-07 Score=74.92 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (250)
.+++|.|+|||||||+++.|+|+ +|+|.+.+.+
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 47899999999999999999998 7889888754
No 206
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.15 E-value=2.7e-06 Score=79.35 Aligned_cols=131 Identities=12% Similarity=0.044 Sum_probs=69.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCc-eEEEeecCCccCC---------CCCCc------ccChhhhhhHHHHHHHhC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAEN---------FDYPV------AMDIRELISLEDVMEELG 67 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~i~i~~~dp~~~~---------~~y~~------~~~i~~~i~~~~vm~~~~ 67 (250)
.++|.|+||+|||||+..+++...+..| .|.+.+.....+. ..++. .++..+.-.+.+.++.++
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~ 284 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLS 284 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999988766444 7887775532110 11100 111122222334444443
Q ss_pred CCCCCCchhhhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCHH-----hH---HHHHHHHHHHHHh-CCCeEEEEE
Q 025642 68 LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELF-----TH---VPVLRNFVDHLKS-RNFNVCAVY 137 (250)
Q Consensus 68 L~~~g~~~~~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~~-----~~---~~i~~~ll~~l~~-~~~~vi~v~ 137 (250)
..+.- ....-......+ ...++.+....+++++++|+|+. .... .. ..+. +.++.+++ .+.+|++++
T Consensus 285 ~~~l~-i~d~~~~s~~~i-~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~-~~Lk~lAke~~i~vi~~s 361 (454)
T 2r6a_A 285 NAGIY-IDDTPSIRVSDI-RAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEIS-RSLKALARELEVPVIALS 361 (454)
T ss_dssp SSCEE-EECCTTCCHHHH-HHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHH-HHHHHHHHHHTCCEEEEE
T ss_pred cCCEE-EECCCCCCHHHH-HHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHH-HHHHHHHHHhCCeEEEEe
Confidence 22210 000001122334 45556665322899999999998 4321 12 2333 34455543 488887775
No 207
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.14 E-value=4.8e-06 Score=75.12 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+.++++|+||+|||||++.++|..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998753
No 208
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.14 E-value=2.1e-05 Score=62.75 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.+.+-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999863
No 209
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.14 E-value=6.2e-06 Score=76.67 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=58.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC--CceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~--~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
.++|.||+|+|||||++++++.+... +..+.+.+ ..+. ..++.+.+.-+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~---------------~~~~--~~~~~~~~~~~------------ 182 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT---------------SEKF--LNDLVDSMKEG------------ 182 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE---------------HHHH--HHHHHHHHHTT------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee---------------HHHH--HHHHHHHHHcc------------
Confidence 46899999999999999999866322 22232221 1111 11222221100
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc-cCH-HhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IEL-FTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 82 ~~~ls~~la~aL~~~~~~~~lllDEPt~-LD~-~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
.. ..+...+.. ++++|++||+.. .+. ..+..++ .+++.+.+.|..++++
T Consensus 183 --~~-~~~~~~~~~--~~~vL~IDEi~~l~~~~~~q~~l~-~~l~~l~~~~~~iIit 233 (440)
T 2z4s_A 183 --KL-NEFREKYRK--KVDILLIDDVQFLIGKTGVQTELF-HTFNELHDSGKQIVIC 233 (440)
T ss_dssp --CH-HHHHHHHTT--TCSEEEEECGGGGSSCHHHHHHHH-HHHHHHHTTTCEEEEE
T ss_pred --cH-HHHHHHhcC--CCCEEEEeCcccccCChHHHHHHH-HHHHHHHHCCCeEEEE
Confidence 01 223334444 789999999988 432 5566666 7888877667776654
No 210
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.13 E-value=6e-07 Score=74.16 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceE--EEeecC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM--HIVNLD 39 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i--~i~~~d 39 (250)
.+++|+|||||||||+.+.|++.+. ..|.+ ++++.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~ 63 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDN 63 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCch
Confidence 5789999999999999999999987 66877 776644
No 211
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.12 E-value=1.1e-06 Score=71.05 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G 31 (250)
+.+|+|||||||||++++|.+.+.+..|
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 5789999999999999999998876554
No 212
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.11 E-value=9.9e-06 Score=71.55 Aligned_cols=98 Identities=11% Similarity=0.147 Sum_probs=57.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~ 83 (250)
.+.|.||+|+||||+++.+++.+...+..+.+.+. .+. ..++.+.+.- .
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~---------------~~~--~~~~~~~~~~--------------~ 87 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA---------------DDF--AQAMVEHLKK--------------G 87 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH---------------HHH--HHHHHHHHHH--------------T
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH---------------HHH--HHHHHHHHHc--------------C
Confidence 46799999999999999999876544444443321 111 1111111100 0
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCccCH--HhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL--FTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~~~lllDEPt~LD~--~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
.. ..+...+ . ++++|++||+..+.. ..+..+. .+++.+.+.+..++++.
T Consensus 88 ~~-~~~~~~~-~--~~~vL~iDEi~~l~~~~~~~~~l~-~~l~~~~~~~~~iii~~ 138 (324)
T 1l8q_A 88 TI-NEFRNMY-K--SVDLLLLDDVQFLSGKERTQIEFF-HIFNTLYLLEKQIILAS 138 (324)
T ss_dssp CH-HHHHHHH-H--TCSEEEEECGGGGTTCHHHHHHHH-HHHHHHHHTTCEEEEEE
T ss_pred cH-HHHHHHh-c--CCCEEEEcCcccccCChHHHHHHH-HHHHHHHHCCCeEEEEe
Confidence 01 1112222 3 689999999988544 5666666 77777766666665543
No 213
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.11 E-value=1.4e-06 Score=72.63 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCceEEEeecCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDP 40 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~dp 40 (250)
-+++|+|||||||||+++.|++.+++ ..+.+......|
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~ 47 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLP 47 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccC
Confidence 46889999999999999999999876 444444443333
No 214
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.11 E-value=5.2e-06 Score=65.68 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|+.|+|||||++.+.+-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999853
No 215
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.11 E-value=1.8e-05 Score=72.55 Aligned_cols=112 Identities=9% Similarity=0.109 Sum_probs=61.0
Q ss_pred CCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc-cHHHHHHhhHHhhhhHhHhcC-CeeeecCchh
Q 025642 99 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLEL-PHVNILSKMD 176 (250)
Q Consensus 99 ~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~-d~~~~~s~~l~~~~~~~~~~~-p~v~vlsK~D 176 (250)
..+.++|.||.-+. .+.....+..-...+ +++|+..-. .+... ..+.. .-.++. |.+-|+||+|
T Consensus 75 ~~~~iiDtPGh~~~------~~~~~~~~~~~D~~i---lVvda~~~~~~~qt~--~~~~~---~~~~~~~~iivviNK~D 140 (403)
T 3sjy_A 75 RRISFIDAPGHEVL------MATMLSGAALMDGAI---LVVAANEPFPQPQTR--EHFVA---LGIIGVKNLIIVQNKVD 140 (403)
T ss_dssp EEEEEEECCCCGGG------HHHHHHHHTTCSEEE---EEEETTSCSSCHHHH--HHHHH---HHHHTCCCEEEEEECGG
T ss_pred ceEEEEECCCcHHH------HHHHHHHHhhCCEEE---EEEECCCCCCcHHHH--HHHHH---HHHcCCCCEEEEEECcc
Confidence 47899999996322 223334443323322 335544321 22211 11111 112343 7888999999
Q ss_pred hhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcC--CceeEEeecCCHHHHHHHHHHhhhhh
Q 025642 177 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESRYFLYLSSMVWCL 248 (250)
Q Consensus 177 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~--~~~f~~l~~~~~~~~~~~~~~~~~~~ 248 (250)
+.+.. ..+. ..+.+.+.+..++ -+.|+|++..+.+.+..|+..++..+
T Consensus 141 l~~~~-~~~~-----------------------~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 141 VVSKE-EALS-----------------------QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp GSCHH-HHHH-----------------------HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred ccchH-HHHH-----------------------HHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 97543 1110 0112223333333 36899999999999999999888754
No 216
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.10 E-value=4e-05 Score=62.90 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=46.0
Q ss_pred hcCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHH
Q 025642 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSS 243 (250)
Q Consensus 164 ~~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~ 243 (250)
-+.|.+-|.||+|+.......+. + ....... -. .+....+.+.++...|.+++..+.+.+..++..
T Consensus 133 ~~~piilv~nK~Dl~~~~~~~~~--------~-~~~~~~~-v~----~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 198 (204)
T 4gzl_A 133 PNTPIILVGTKLDLRDDKDTIEK--------L-KEKKLTP-IT----YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198 (204)
T ss_dssp SSCCEEEEEECHHHHTCHHHHHH--------H-HHTTCCC-CC----HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred CCCCEEEEEechhhccchhhhhh--------h-hcccccc-cc----HHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHH
Confidence 37899999999999875421111 0 1110000 01 122334556678888999999999999999988
Q ss_pred hhhhh
Q 025642 244 MVWCL 248 (250)
Q Consensus 244 ~~~~~ 248 (250)
+.+.+
T Consensus 199 l~~~~ 203 (204)
T 4gzl_A 199 AIRAV 203 (204)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 87653
No 217
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.10 E-value=4.3e-05 Score=67.48 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
.++|+|++|+|||||++.+.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999974
No 218
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.10 E-value=3.1e-06 Score=67.31 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.+.+-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 219
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.08 E-value=1.6e-06 Score=73.98 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
..+++|+|||||||||+++.|+|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999975
No 220
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.08 E-value=1.1e-05 Score=63.24 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.+.+-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 221
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.07 E-value=5e-06 Score=68.24 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i 35 (250)
-.+.|.||+|+||||+++.++......++.+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~ 87 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLI 87 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 467899999999999999999877655555544
No 222
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.07 E-value=5.5e-05 Score=60.98 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++|+|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 6689999999999999999987
No 223
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.06 E-value=2e-05 Score=69.64 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+=++++|++|+|||||++.+.+-.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 557999999999999999988743
No 224
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.06 E-value=1.5e-05 Score=64.77 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=39.7
Q ss_pred hcCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHH
Q 025642 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSS 243 (250)
Q Consensus 164 ~~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~ 243 (250)
.+.|.+-|.||+|+.... ..+.+.+.+.... ... +.. +....-..|.+.+..+.+.+..+...
T Consensus 123 ~~~piilv~NK~Dl~~~~---------~~~~~~~~~~~~~--~~~---~~~---~~~~~~~~~~~~Sa~~g~gi~~l~~~ 185 (190)
T 1m2o_B 123 KDVPFVILGNKIDAPNAV---------SEAELRSALGLLN--TTG---SQR---IEGQRPVEVFMCSVVMRNGYLEAFQW 185 (190)
T ss_dssp TTCCEEEEEECTTSTTCC---------CHHHHHHHTTCSS--CCC---------CCSSCCEEEEECBTTTTBSHHHHHHH
T ss_pred cCCCEEEEEECCCCcCCC---------CHHHHHHHhCCcc--ccc---ccc---ccccceEEEEEeECCcCCCHHHHHHH
Confidence 478999999999996521 1111222221110 000 000 23334478999999999999999888
Q ss_pred hhhh
Q 025642 244 MVWC 247 (250)
Q Consensus 244 ~~~~ 247 (250)
+.+.
T Consensus 186 l~~~ 189 (190)
T 1m2o_B 186 LSQY 189 (190)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 7654
No 225
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.06 E-value=1.7e-06 Score=69.41 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (250)
.+++|+|||||||||+++.+++.+ |.+.+++-+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~ 41 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDF 41 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcc
Confidence 578999999999999999999864 677776544
No 226
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.06 E-value=1.6e-05 Score=63.40 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++++|++|+|||||++.+.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5689999999999999999984
No 227
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.06 E-value=2.9e-06 Score=69.23 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 228
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.06 E-value=2e-05 Score=62.26 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|+.|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 229
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.06 E-value=5.8e-05 Score=71.50 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
.+++++|++||||||++..|+..+...+.+|.++..|+... ...+. +....++.++...+... -....
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~--------aa~~q--L~~~~~~~~i~v~~~~~--~~dp~ 169 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRA--------GAFDQ--LKQNATKARIPFYGSYT--EMDPV 169 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSS--------HHHHH--HHHHHHHHTCCEEECCC--CSCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccch--------hHHHH--HHHHhhccCceEEccCC--CCCHH
Confidence 47889999999999999999977765555788888776321 01111 11122334443110000 00000
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCcc--CHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhh
Q 025642 83 DNLDDWLAEELDNYLDDDYLVFDCPGQI--ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (250)
Q Consensus 83 ~~ls~~la~aL~~~~~~~~lllDEPt~L--D~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (250)
.-.+..+..+-.. +.+++|+|+|+.+ +.....++. .+.+.. .-. . +++++|+..-.+....+.
T Consensus 170 ~i~~~al~~~~~~--~~DvvIIDTpG~~~~~~~l~~el~-~~~~~i-~pd-~--vllVvDa~~g~~~~~~a~-------- 234 (504)
T 2j37_W 170 IIASEGVEKFKNE--NFEIIIVDTSGRHKQEDSLFEEML-QVANAI-QPD-N--IVYVMDASIGQACEAQAK-------- 234 (504)
T ss_dssp HHHHHHHHHHHHT--TCCEEEEEECCCCTTCHHHHHHHH-HHHHHH-CCS-E--EEEEEETTCCTTHHHHHH--------
T ss_pred HHHHHHHHHHHHC--CCcEEEEeCCCCcccchhHHHHHH-HHHhhh-cCc-e--EEEEEeccccccHHHHHH--------
Confidence 1111233333224 7799999999984 333232322 332222 212 2 234466654333222211
Q ss_pred HhHhcCC-eeeecCchhhhcc
Q 025642 161 MVQLELP-HVNILSKMDLVTN 180 (250)
Q Consensus 161 ~~~~~~p-~v~vlsK~Dl~~~ 180 (250)
.+.-..| ..-|+||.|...+
T Consensus 235 ~~~~~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 235 AFKDKVDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHHHHHCCCCEEEECTTSCCC
T ss_pred HHHhhcCceEEEEeCCccccc
Confidence 1111256 3678999998754
No 230
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.05 E-value=2.4e-05 Score=61.33 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.+.+-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 231
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.05 E-value=5.4e-05 Score=59.00 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 232
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.05 E-value=7.2e-06 Score=68.15 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEe
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~ 36 (250)
.+.|.||+|+||||+++.++......+..+.+.
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~ 86 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYI 86 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 578999999999999999998765444444443
No 233
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.05 E-value=1.4e-05 Score=64.55 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 234
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.05 E-value=2.5e-05 Score=61.04 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 55799999999999999999763
No 235
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.05 E-value=1.5e-05 Score=62.64 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.+.+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999999864
No 236
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.05 E-value=3.2e-05 Score=62.66 Aligned_cols=57 Identities=11% Similarity=0.057 Sum_probs=37.4
Q ss_pred cCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHh
Q 025642 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSM 244 (250)
Q Consensus 165 ~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~ 244 (250)
+.|.+-|+||+|+.... .. .. +.+.++.+.++ ..|.+++..+.+.+..++..+
T Consensus 128 ~~piiiv~NK~Dl~~~~-~v------~~-------------------~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 128 NIVMAIAGNKCDLSDIR-EV------PL-------------------KDAKEYAESIG-AIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp TCEEEEEEECGGGGGGC-CS------CH-------------------HHHHHHHHTTT-CEEEECBTTTTBSHHHHHHHH
T ss_pred CCcEEEEEECccccccc-cc------CH-------------------HHHHHHHHHcC-CEEEEEeCCCCcCHHHHHHHH
Confidence 67899999999996422 10 00 01112223445 578999999999999888887
Q ss_pred hhhh
Q 025642 245 VWCL 248 (250)
Q Consensus 245 ~~~~ 248 (250)
.+.+
T Consensus 181 ~~~i 184 (192)
T 2fg5_A 181 SRQI 184 (192)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 6654
No 237
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.05 E-value=3.9e-05 Score=61.00 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=43.8
Q ss_pred cCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHh
Q 025642 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSM 244 (250)
Q Consensus 165 ~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~ 244 (250)
+.|.+-|.||+|+.......+. + .......- .+ +...++...++...|.+++..+.+.+..+...+
T Consensus 109 ~~piilv~nK~Dl~~~~~~~~~--------~-~~~~~~~v-~~----~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 174 (186)
T 1mh1_A 109 NTPIILVGTKLDLRDDKDTIEK--------L-KEKKLTPI-TY----PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174 (186)
T ss_dssp TSCEEEEEECHHHHTCHHHHHH--------H-HHTTCCCC-CH----HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEeEcccccccchhhhh--------h-cccccccC-CH----HHHHHHHHhcCCcEEEEecCCCccCHHHHHHHH
Confidence 7899999999999765411111 1 11100000 11 122344456677799999999999999998887
Q ss_pred hhhh
Q 025642 245 VWCL 248 (250)
Q Consensus 245 ~~~~ 248 (250)
.+.+
T Consensus 175 ~~~~ 178 (186)
T 1mh1_A 175 IRAV 178 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 238
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.04 E-value=4e-05 Score=72.11 Aligned_cols=113 Identities=13% Similarity=0.196 Sum_probs=62.8
Q ss_pred CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeecCchhh
Q 025642 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (250)
Q Consensus 98 ~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK~Dl 177 (250)
+..+.++|.||. ....+.....+..-+. +++++|+..-..+...-... ..-.++.|++-|+||+|+
T Consensus 72 ~~~i~iiDtPGh------~~~~~~~~~~~~~aD~---~ilVvda~~g~~~qt~e~l~-----~~~~~~ip~IvviNK~Dl 137 (482)
T 1wb1_A 72 NYRITLVDAPGH------ADLIRAVVSAADIIDL---ALIVVDAKEGPKTQTGEHML-----ILDHFNIPIIVVITKSDN 137 (482)
T ss_dssp TEEEEECCCSSH------HHHHHHHHHHTTSCCE---EEEEEETTTCSCHHHHHHHH-----HHHHTTCCBCEEEECTTS
T ss_pred CEEEEEEECCCh------HHHHHHHHHHHhhCCE---EEEEEecCCCccHHHHHHHH-----HHHHcCCCEEEEEECCCc
Confidence 457899999996 2233233344433232 23345544322233321111 122468999999999999
Q ss_pred hcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhc-C--CceeEEeecCCHHHHHHHHHHhhhhh
Q 025642 178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-S--MVSFMPLDLRKESRYFLYLSSMVWCL 248 (250)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~-~--~~~f~~l~~~~~~~~~~~~~~~~~~~ 248 (250)
.... .++ ...+.+.+++..+ + -..|+|++..+.+.+..|+..++..+
T Consensus 138 ~~~~-~~~-----------------------~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 138 AGTE-EIK-----------------------RTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp SCHH-HHH-----------------------HHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccch-hHH-----------------------HHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 7532 111 1112233333333 2 36899999998888888888887643
No 239
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.04 E-value=1.9e-06 Score=70.56 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+-++|+|+||||||||++.++|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 668999999999999999999975
No 240
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.03 E-value=2.9e-05 Score=61.63 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=42.3
Q ss_pred cCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHh
Q 025642 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSM 244 (250)
Q Consensus 165 ~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~ 244 (250)
+.|.+-|.||+|+.+....... .. .. ... .. +...++.+.++...|.+.+..+.+.+..++..+
T Consensus 112 ~~piilv~nK~Dl~~~~~~~~~--~~-------~~-~~v--~~----~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 112 GVPIVLVGTKLDLRDDKQFFID--HP-------GA-VPI--TT----VQGEELKKLIGAPAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp TCCEEEEEECHHHHTCHHHHHH--C---------C-CCC--CH----HHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEEechhhhcCcccccc--cc-------cC-CCC--CH----HHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHH
Confidence 7899999999999765411110 00 00 000 01 112234445676789999999999999998887
Q ss_pred hhhh
Q 025642 245 VWCL 248 (250)
Q Consensus 245 ~~~~ 248 (250)
-+.+
T Consensus 176 ~~~i 179 (182)
T 3bwd_D 176 IRVV 179 (182)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 241
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.03 E-value=6.2e-07 Score=74.91 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC---CCCCceEEE
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHI 35 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l---~~~~G~i~i 35 (250)
+..++|+||+||||||+++.+++.+ .++.|.++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 3689999999999999999999865 445555543
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.02 E-value=3.1e-06 Score=73.88 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (250)
+++++||||||||||+++++|.+.+ +.+.+.|.+
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~ 79 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGL--NFISVKGPE 79 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHH
Confidence 5899999999999999999998876 677777644
No 243
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.02 E-value=3.5e-05 Score=61.99 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999863
No 244
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.01 E-value=4.6e-05 Score=61.61 Aligned_cols=61 Identities=7% Similarity=0.037 Sum_probs=39.5
Q ss_pred hcCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHH
Q 025642 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSS 243 (250)
Q Consensus 164 ~~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~ 243 (250)
.+.|.+-|.||+|+..... +-. . .+...++...++...|.+.+..+.+.+..++..
T Consensus 118 ~~~piilv~nK~Dl~~~~~---~~v--~-------------------~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~ 173 (184)
T 3ihw_A 118 SEVPMVLVGTQDAISAANP---RVI--D-------------------DSRARKLSTDLKRCTYYETCATYGLNVERVFQD 173 (184)
T ss_dssp GGSCEEEEEECTTCBTTBC---CCS--C-------------------HHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHH
T ss_pred CCCCEEEEEECcccccccc---ccc--C-------------------HHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHH
Confidence 4689999999999953210 000 0 011223344566678899999998888888887
Q ss_pred hhhhh
Q 025642 244 MVWCL 248 (250)
Q Consensus 244 ~~~~~ 248 (250)
+.+.+
T Consensus 174 l~~~i 178 (184)
T 3ihw_A 174 VAQKV 178 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 245
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.01 E-value=3.8e-05 Score=63.04 Aligned_cols=69 Identities=9% Similarity=0.140 Sum_probs=42.9
Q ss_pred cCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHh
Q 025642 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSM 244 (250)
Q Consensus 165 ~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~ 244 (250)
+.|.+-|.||+|+.... .... .+ ..+....- .. +...++...++...|.+++..+.+.+..+...+
T Consensus 129 ~~piilv~nK~Dl~~~~-~~~~-------~~-~~~~~~~v-~~----~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l 194 (207)
T 2fv8_A 129 NVPIILVANKKDLRSDE-HVRT-------EL-ARMKQEPV-RT----DDGRAMAVRIQAYDYLECSAKTKEGVREVFETA 194 (207)
T ss_dssp TCCEEEEEECGGGGGCH-HHHH-------HH-HHTTCCCC-CH----HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEEEchhhhccc-cchh-------hh-hhcccCCC-CH----HHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHH
Confidence 78999999999997654 1111 01 11110000 01 122334555677789999999999999988877
Q ss_pred hhh
Q 025642 245 VWC 247 (250)
Q Consensus 245 ~~~ 247 (250)
-+.
T Consensus 195 ~~~ 197 (207)
T 2fv8_A 195 TRA 197 (207)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 246
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.00 E-value=6.2e-06 Score=74.43 Aligned_cols=79 Identities=23% Similarity=0.269 Sum_probs=42.4
Q ss_pred CCEEEEeCCCccCHH-hHHHHHHHHHHHHHhCCCeEEEEEecccccc--ccHHHHHHhhHHhhhhHh--HhcCCeeeecC
Q 025642 99 DDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILS 173 (250)
Q Consensus 99 ~~~lllDEPt~LD~~-~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~--~d~~~~~s~~l~~~~~~~--~~~~p~v~vls 173 (250)
.++.|.|.|+..+.. ....+...+++.+.+.. +++|++|+... .++..-+..+.-.+...- ..+.|.+-|+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d---~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~N 282 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR---VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 282 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC---EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhcc---EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEE
Confidence 568999999974421 11122234455554322 24556676543 334333332222222211 24789999999
Q ss_pred chhhhcc
Q 025642 174 KMDLVTN 180 (250)
Q Consensus 174 K~Dl~~~ 180 (250)
|+|+...
T Consensus 283 K~Dl~~~ 289 (342)
T 1lnz_A 283 KMDMPEA 289 (342)
T ss_dssp CTTSTTH
T ss_pred CccCCCC
Confidence 9999754
No 247
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.00 E-value=4.4e-05 Score=61.28 Aligned_cols=70 Identities=7% Similarity=0.027 Sum_probs=41.7
Q ss_pred hcCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecC-CHHHHHHHHH
Q 025642 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KESRYFLYLS 242 (250)
Q Consensus 164 ~~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~-~~~~~~~~~~ 242 (250)
-+.|.+-|.||+|+......+..+- +...... . .+...++.+.++...|++.+.. +.+.+..++.
T Consensus 110 ~~~piilv~nK~Dl~~~~~~~~~~~--------~~~~~~v--~----~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~ 175 (184)
T 1m7b_A 110 PNTKMLLVGCKSDLRTDVSTLVELS--------NHRQTPV--S----YDQGANMAKQIGAATYIECSALQSENSVRDIFH 175 (184)
T ss_dssp TTCEEEEEEECGGGGGCHHHHHHHH--------TTTCCCC--C----HHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHH
T ss_pred CCCCEEEEEEcchhhcchhhHhhhh--------hcccCCC--C----HHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHH
Confidence 3689999999999975431111110 0000001 0 1123344455677789999997 6888999888
Q ss_pred Hhhhh
Q 025642 243 SMVWC 247 (250)
Q Consensus 243 ~~~~~ 247 (250)
.+-+.
T Consensus 176 ~i~~~ 180 (184)
T 1m7b_A 176 VATLA 180 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
No 248
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.00 E-value=7.4e-05 Score=60.74 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.+-++++|++|+|||||++.+.+-.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3568999999999999999888743
No 249
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.99 E-value=3.5e-05 Score=62.24 Aligned_cols=69 Identities=12% Similarity=0.181 Sum_probs=43.2
Q ss_pred cCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHh
Q 025642 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSM 244 (250)
Q Consensus 165 ~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~ 244 (250)
+.|.+-|.||+|+.......+.+ . ......- . .+...++...++...|.+.+..+.+.+..+...+
T Consensus 122 ~~piilv~nK~Dl~~~~~~~~~~-~--------~~~~~~v-~----~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 187 (194)
T 2atx_A 122 NVPFLLIGTQIDLRDDPKTLARL-N--------DMKEKPI-C----VEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187 (194)
T ss_dssp TCCEEEEEECTTSTTCHHHHHHH-T--------TTTCCCC-C----HHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEEEChhhcccccchhhc-c--------cccCccc-C----HHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHH
Confidence 78999999999997654111111 0 0000000 0 1223344555677789999999999999998887
Q ss_pred hhh
Q 025642 245 VWC 247 (250)
Q Consensus 245 ~~~ 247 (250)
.+.
T Consensus 188 ~~~ 190 (194)
T 2atx_A 188 IIA 190 (194)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 250
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.96 E-value=2.2e-05 Score=62.25 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|+.|+|||||++.+.+-
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 251
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.96 E-value=3e-05 Score=71.82 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHc
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g 24 (250)
...++|+|++|+|||||++.+.|
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999986
No 252
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.95 E-value=6.1e-05 Score=61.48 Aligned_cols=69 Identities=10% Similarity=0.182 Sum_probs=43.6
Q ss_pred cCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHh
Q 025642 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSM 244 (250)
Q Consensus 165 ~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~ 244 (250)
+.|.+-|.||+|+.......+. + .......- . .+...++.+.++...|.+++..+.+.+..+...+
T Consensus 129 ~~piilv~nK~Dl~~~~~~~~~--------~-~~~~~~~v-~----~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i 194 (201)
T 2gco_A 129 NVPIILVGNKKDLRQDEHTRRE--------L-AKMKQEPV-R----SEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 194 (201)
T ss_dssp TCCEEEEEECGGGTTCHHHHHH--------H-HTTTCCCC-C----HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEEecHHhhcCccchhh--------h-cccccCcC-C----HHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHH
Confidence 7899999999999865411111 0 01100000 0 1222345556777799999999999999998887
Q ss_pred hhh
Q 025642 245 VWC 247 (250)
Q Consensus 245 ~~~ 247 (250)
-+.
T Consensus 195 ~~~ 197 (201)
T 2gco_A 195 TRA 197 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 253
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.95 E-value=5.4e-06 Score=76.21 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=31.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHc------------CCCCCCceEEEee
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYR------------HCETVRRTMHIVN 37 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g------------~l~~~~G~i~i~~ 37 (250)
...++|+|+||||||||+++|+| ...|+.|.+.+.+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 35789999999999999999999 5678889988865
No 254
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.94 E-value=5.9e-05 Score=61.46 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 56899999999999999999974
No 255
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.94 E-value=0.00023 Score=58.69 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=44.0
Q ss_pred hcCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHH
Q 025642 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSS 243 (250)
Q Consensus 164 ~~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~ 243 (250)
-+.|.+-|.||+|+.... .....+ +...... -.+ +...++...++...|.+.+..+.+.+..++..
T Consensus 137 ~~~piilv~nK~Dl~~~~-~~~~~~--------~~~~~~~-v~~----~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~ 202 (214)
T 2j1l_A 137 KKVPIIVVGCKTDLRKDK-SLVNKL--------RRNGLEP-VTY----HRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202 (214)
T ss_dssp SSCCEEEEEECGGGGSCH-HHHHHH--------HHTTCCC-CCH----HHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred CCCCEEEEEEChhhhccc-hhhhhh--------cccccCc-ccH----HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence 378999999999997654 111110 1110000 011 22234455667789999999999999999888
Q ss_pred hhhhh
Q 025642 244 MVWCL 248 (250)
Q Consensus 244 ~~~~~ 248 (250)
+.+.+
T Consensus 203 l~~~~ 207 (214)
T 2j1l_A 203 AAEVA 207 (214)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 256
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.94 E-value=0.00014 Score=65.37 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.-++|+|++|+|||||++.+.|.-
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999853
No 257
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.94 E-value=6.9e-05 Score=61.83 Aligned_cols=70 Identities=9% Similarity=0.072 Sum_probs=41.4
Q ss_pred hcCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecC-CHHHHHHHHH
Q 025642 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KESRYFLYLS 242 (250)
Q Consensus 164 ~~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~-~~~~~~~~~~ 242 (250)
-+.|.+-|.||+|+........++.+ ...... .+ +...++...++...|.+.+.. +.+.+..++.
T Consensus 131 ~~~piilv~nK~Dl~~~~~~~~~~~~--------~~~~~v--~~----~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~ 196 (205)
T 1gwn_A 131 PNTKMLLVGCKSDLRTDVSTLVELSN--------HRQTPV--SY----DQGANMAKQIGAATYIECSALQSENSVRDIFH 196 (205)
T ss_dssp TTCEEEEEEECGGGGGCHHHHHHHHT--------TTCCCC--CH----HHHHHHHHHHTCSEEEECCTTTCHHHHHHHHH
T ss_pred CCCCEEEEEechhhccchhhhhhhcc--------cccCCC--CH----HHHHHHHHHcCCCEEEEeeeccCCcCHHHHHH
Confidence 36889999999999764312211100 000000 01 122334455666789999997 7888998888
Q ss_pred Hhhhh
Q 025642 243 SMVWC 247 (250)
Q Consensus 243 ~~~~~ 247 (250)
.+-+.
T Consensus 197 ~l~~~ 201 (205)
T 1gwn_A 197 VATLA 201 (205)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
No 258
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.93 E-value=3.7e-05 Score=63.26 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+-++|+|+.|+|||||++.+.+-.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 568999999999999999998743
No 259
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.93 E-value=0.0001 Score=64.51 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
..++|+|++|||||||++.+.|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999964
No 260
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.93 E-value=7.8e-05 Score=61.00 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 56899999999999999999763
No 261
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.90 E-value=2.3e-05 Score=68.28 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
-.+.+.||+|+||||+.+.+++.+...++.+...+...... ... . -+.+|-.+.. . ....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~------~~~------~---~~l~g~~~~~-~----~~~~ 107 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME------KHA------V---SRLIGAPPGY-V----GYEE 107 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS------TTH------H---HHHHCCCTTS-T----TTTT
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc------ccc------H---HHhcCCCCcc-c----cccc
Confidence 36889999999999999999999888777776665432111 000 1 1112322110 0 0000
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHH
Q 025642 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (250)
Q Consensus 83 ~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~ 125 (250)
. ..+..++... ...++++||...+++.....++ ++++.
T Consensus 108 --~-~~~~~~~~~~-~~~vl~lDEi~~l~~~~~~~Ll-~~le~ 145 (311)
T 4fcw_A 108 --G-GQLTEAVRRR-PYSVILFDAIEKAHPDVFNILL-QMLDD 145 (311)
T ss_dssp --C-CHHHHHHHHC-SSEEEEEETGGGSCHHHHHHHH-HHHHH
T ss_pred --c-chHHHHHHhC-CCeEEEEeChhhcCHHHHHHHH-HHHhc
Confidence 0 1223334331 4479999999889888776666 55554
No 262
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.90 E-value=7.9e-05 Score=60.39 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999873
No 263
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.90 E-value=1.2e-05 Score=77.50 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=28.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC-ceEEEee
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVN 37 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~-G~i~i~~ 37 (250)
.++|+||||+||||++++|++.+.+.. |.+.+.+
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 478999999999999999999998877 5555543
No 264
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.90 E-value=0.00018 Score=58.09 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 56899999999999999998863
No 265
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.89 E-value=9.3e-06 Score=69.94 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++++|+.|+|||||++.+.|
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6789999999999999999997
No 266
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.89 E-value=2.1e-05 Score=74.67 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=32.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc--CCCCCCceEEEeecCCcc
Q 025642 5 QLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAA 42 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g--~l~~~~G~i~i~~~dp~~ 42 (250)
++|.|++||||||+++.|.. +.++..+++.+...||..
T Consensus 170 lLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 170 LLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 57999999999999999876 556677889998888853
No 267
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.89 E-value=5e-05 Score=76.01 Aligned_cols=70 Identities=23% Similarity=0.189 Sum_probs=54.0
Q ss_pred HHHHhCCCCC-CCchhhhhhh--hhhHHHHHHHHHhcCCCC--CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025642 62 VMEELGLGPN-GGLIYCMEHL--EDNLDDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (250)
Q Consensus 62 vm~~~~L~~~-g~~~~~~~~~--~~~ls~~la~aL~~~~~~--~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~ 135 (250)
.++.+|++.. .+.. ...+ .+++++.||++|.. +| .++||||||+ ||+.....++ +++++|++.|.+|++
T Consensus 362 ~L~~vGL~~l~l~r~--~~tLSGGe~QRV~LA~aL~~--~p~~~llILDEPT~~Ld~~~~~~L~-~~l~~L~~~G~TVIv 436 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRS--TPTLSPGELQRLRLATQLYS--NLFGVVYVLDEPSAGLHPADTEALL-SALENLKRGGNSLFV 436 (842)
T ss_dssp HHHHTTCTTSBTTCB--GGGSCHHHHHHHHHHHHTTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCEEEE
T ss_pred HHHhCCCCcCCccCC--cCcCCHHHHHHHHHHHHHhh--CCCCeEEEeeCccccCCHHHHHHHH-HHHHHHHHcCCEEEE
Confidence 5778888743 1111 1122 23455999999998 87 5999999999 9999999999 999999888999877
Q ss_pred E
Q 025642 136 V 136 (250)
Q Consensus 136 v 136 (250)
|
T Consensus 437 V 437 (842)
T 2vf7_A 437 V 437 (842)
T ss_dssp E
T ss_pred E
Confidence 6
No 268
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.89 E-value=0.00023 Score=57.29 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|+.|+|||||++.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999863
No 269
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.89 E-value=0.00037 Score=63.70 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|+.|+|||||++.+.+.
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHhh
Confidence 56899999999999999999874
No 270
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.89 E-value=5.6e-05 Score=61.09 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=39.7
Q ss_pred hcCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHH
Q 025642 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSS 243 (250)
Q Consensus 164 ~~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~ 243 (250)
-+.|.+-|.||+|+..... -. . . .+.+.++.+.++...|++++..+.+.+..++..
T Consensus 126 ~~~p~ilv~nK~Dl~~~~~-~~--~--~-------------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 181 (194)
T 3reg_A 126 DTAKTVLVGLKVDLRKDGS-DD--V--T-------------------KQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181 (194)
T ss_dssp TTSEEEEEEECGGGCCTTT-TC--C--C-------------------HHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHH
T ss_pred CCCCEEEEEEChhhccCCC-Cc--c--c-------------------HHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHH
Confidence 3689999999999975320 00 0 0 011222334456666999999999999988888
Q ss_pred hhhhh
Q 025642 244 MVWCL 248 (250)
Q Consensus 244 ~~~~~ 248 (250)
+.+++
T Consensus 182 l~~~i 186 (194)
T 3reg_A 182 SVDCI 186 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 271
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.89 E-value=0.00023 Score=61.50 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.-++|+|++|+|||||++.+.|.-
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999864
No 272
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.88 E-value=4.1e-05 Score=61.83 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 56899999999999999999863
No 273
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.88 E-value=3.4e-05 Score=62.55 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++|+|+.|+|||||++.+.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999976
No 274
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.88 E-value=1.1e-05 Score=66.52 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
...++|+|++||||||+++.|++.++ .+.+...|+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~ 55 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDD 55 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCc
Confidence 46799999999999999999999764 245555554
No 275
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.87 E-value=6e-05 Score=76.21 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=53.7
Q ss_pred HHHHhCCCCC-CCchhhhhhh--hhhHHHHHHHHHhcCCC--CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025642 62 VMEELGLGPN-GGLIYCMEHL--EDNLDDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (250)
Q Consensus 62 vm~~~~L~~~-g~~~~~~~~~--~~~ls~~la~aL~~~~~--~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~ 135 (250)
.++.+||+.. .... ...+ .+++++.||++|.. + |+++||||||+ ||+.....++ +++++|++.|.+|++
T Consensus 487 ~L~~vGL~~l~ldR~--~~tLSGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~TVIv 561 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRS--AGTLSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIV 561 (972)
T ss_dssp HHHHHTCTTSBSSSB--GGGCCHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCEEEE
T ss_pred HhhhCCCCccccCCc--cccCCHHHHHHHHHHHHHhh--CCCCCEEEEeCcccCCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 4778888742 1111 1222 23455999999998 6 59999999999 9999999999 999999888999887
Q ss_pred E
Q 025642 136 V 136 (250)
Q Consensus 136 v 136 (250)
|
T Consensus 562 V 562 (972)
T 2r6f_A 562 V 562 (972)
T ss_dssp E
T ss_pred E
Confidence 7
No 276
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.87 E-value=5.7e-06 Score=67.65 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
|..+++|+|++|||||||++.+.+.+++.+.++.....++
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 4467899999999999999999998776655666655554
No 277
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.86 E-value=2e-05 Score=74.13 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.|-
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 55899999999999999998763
No 278
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.86 E-value=0.00016 Score=58.81 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 279
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.86 E-value=5.9e-06 Score=69.04 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
.++|+||+|||||||++.|.+.++
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 578999999999999999999865
No 280
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.84 E-value=7.9e-06 Score=69.60 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeec
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~ 38 (250)
+++|+||||+||||+++++++... .|.+.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~ 83 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 83 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH
Confidence 589999999999999999999875 566666553
No 281
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.84 E-value=5.6e-05 Score=76.63 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=52.8
Q ss_pred HHHHhCCCCC-CCchhhhhhh--hhhHHHHHHHHHhcCCC--CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025642 62 VMEELGLGPN-GGLIYCMEHL--EDNLDDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (250)
Q Consensus 62 vm~~~~L~~~-g~~~~~~~~~--~~~ls~~la~aL~~~~~--~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~ 135 (250)
.++.+||+.. ... ....+ .+++++.||++|.. + |+++||||||+ ||+.....++ +++++|++.|.+|++
T Consensus 504 ~L~~vGL~~l~l~r--~~~tLSGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~TVIv 578 (993)
T 2ygr_A 504 FLLDVGLEYLSLSR--AAATLSGGEAQRIRLATQIGS--GLVGVLYVLDEPSIGLHQRDNRRLI-ETLTRLRDLGNTLIV 578 (993)
T ss_dssp HHHHHTGGGSCTTC--BGGGCCHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCEEEE
T ss_pred HHhhCCCCccccCC--CcccCCHHHHHHHHHHHHHhh--CCCCcEEEEeCcccCCCHHHHHHHH-HHHHHHHHcCCEEEE
Confidence 4667787632 111 01222 23455999999998 7 58999999999 9999999999 999999888999887
Q ss_pred E
Q 025642 136 V 136 (250)
Q Consensus 136 v 136 (250)
|
T Consensus 579 V 579 (993)
T 2ygr_A 579 V 579 (993)
T ss_dssp E
T ss_pred E
Confidence 6
No 282
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.84 E-value=4.7e-06 Score=79.84 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc-eEE-Eee
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMH-IVN 37 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~i~-i~~ 37 (250)
.+++|+|+|||||||+.++|++.+.+.+| ++. +++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 57899999999999999999999999886 786 444
No 283
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.83 E-value=1e-05 Score=64.66 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHc
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g 24 (250)
|+..++|.|++||||||+++.++.
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHh
Confidence 788899999999999999999997
No 284
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.83 E-value=3.9e-05 Score=62.23 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=4.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999988753
No 285
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.82 E-value=6.5e-06 Score=66.82 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEee
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~ 37 (250)
..++++|++||||||+++.+++.+.+.++.+.+.+
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 57889999999999999999999887778776554
No 286
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.82 E-value=8.5e-06 Score=66.93 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
..++|+|+|||||||+++.|++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999999999
No 287
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.82 E-value=8.1e-05 Score=70.02 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
-++.|.||||+||||+++++++..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999999853
No 288
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.82 E-value=5.3e-05 Score=68.69 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=49.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~ 83 (250)
++.|.||+|+|||||+..++......++.+.+....-.. .+ . ..+++|..+..=.+.. .....
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~-----~~------~-----~a~~~g~~~~~l~i~~-~~~~e 127 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-----DP------I-----YARKLGVDIDNLLCSQ-PDTGE 127 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-----CH------H-----HHHHTTCCGGGCEEEC-CSSHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc-----cH------H-----HHHHcCCChhheeeeC-CCCHH
Confidence 578999999999999988887654445566665432110 00 0 1334444321100000 00112
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCcc
Q 025642 84 NLDDWLAEELDNYLDDDYLVFDCPGQI 110 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~~~lllDEPt~L 110 (250)
.+ .++++.+....+++++++|+++.+
T Consensus 128 ~~-~~~~~~l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 128 QA-LEICDALARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HH-HHHHHHHHHHTCCSEEEEECGGGC
T ss_pred HH-HHHHHHHHhccCCCEEEEcCHHHh
Confidence 23 344444432127999999999994
No 289
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.80 E-value=6.7e-05 Score=68.27 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLY 23 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~ 23 (250)
.++++|..++|||||++.+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999887
No 290
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.80 E-value=8.9e-06 Score=72.37 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV 29 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~ 29 (250)
.++|.||+|+||||+++.+++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999876543
No 291
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.79 E-value=0.00022 Score=66.17 Aligned_cols=111 Identities=12% Similarity=0.189 Sum_probs=59.8
Q ss_pred CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc-------cHHHHHHhhHHhhhhHhHhcCC-ee
Q 025642 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-------DVTKFISGCMASLSAMVQLELP-HV 169 (250)
Q Consensus 98 ~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~-------d~~~~~s~~l~~~~~~~~~~~p-~v 169 (250)
+..+.|.|.||+- ...+..+..+..-...++ ++|+..-. .+...- .......++.| .+
T Consensus 94 ~~~~~iiDTPGh~------~f~~~~~~~~~~aD~~il---VVDa~~g~~e~~~~~~~qt~e-----~l~~~~~~~v~~iI 159 (439)
T 3j2k_7 94 KKHFTILDAPGHK------SFVPNMIGGASQADLAVL---VISARKGEFETGFEKGGQTRE-----HAMLAKTAGVKHLI 159 (439)
T ss_pred CeEEEEEECCChH------HHHHHHHhhHhhCCEEEE---EEECCCCccccccCCCchHHH-----HHHHHHHcCCCeEE
Confidence 4579999999963 223344444544343333 34543311 011111 11122346788 67
Q ss_pred eecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCC-----ceeEEeecCCHHHHHHHHH
Q 025642 170 NILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-----VSFMPLDLRKESRYFLYLS 242 (250)
Q Consensus 170 ~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~-----~~f~~l~~~~~~~~~~~~~ 242 (250)
-|+||+|+...... . .++....+.+.+++..+++ +.|+|++..+.+.+..+..
T Consensus 160 vviNK~Dl~~~~~~--------~------------~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 160 VLINKMDDPTVNWS--------N------------ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEeecCCCcccchH--------H------------HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 88999999643200 0 1223334444555555554 6799999988888777443
No 292
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.78 E-value=1.1e-05 Score=69.80 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeec
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~ 38 (250)
+++|+||||+|||||++++++... .|.+.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~ 107 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 107 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred eEEEECCCcChHHHHHHHHHHHcC--CCEEEecHH
Confidence 589999999999999999999875 567766553
No 293
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.78 E-value=0.00028 Score=65.58 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC-CceEEEeecCCcc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAA 42 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~i~i~~~dp~~ 42 (250)
.+++++|++|+||||++..|+..+... +.+|.+...||..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 578889999999999999999888776 6789999888743
No 294
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.76 E-value=0.00011 Score=60.11 Aligned_cols=65 Identities=14% Similarity=0.211 Sum_probs=39.6
Q ss_pred cCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHh
Q 025642 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSM 244 (250)
Q Consensus 165 ~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~ 244 (250)
+.|.+-|.||+|+......... . .... . .+...++.+.++...|++.+..+.+.+..+...+
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~~--~----------~~~v--~----~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 174 (212)
T 2j0v_A 113 NVPIVLVGTKLDLRDDKGYLAD--H----------TNVI--T----STQGEELRKQIGAAAYIECSSKTQQNVKAVFDTA 174 (212)
T ss_dssp TCCEEEEEECHHHHTCHHHHHT--C----------SSCC--C----HHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEEeCHHhhhCcccccc--c----------cCCC--C----HHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHH
Confidence 7899999999999765411110 0 0000 0 1112233445666788999998888888887776
Q ss_pred hhh
Q 025642 245 VWC 247 (250)
Q Consensus 245 ~~~ 247 (250)
-+.
T Consensus 175 ~~~ 177 (212)
T 2j0v_A 175 IKV 177 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 295
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.76 E-value=0.00013 Score=65.53 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
-++.|.||+|||||||+..++..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999998875
No 296
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.75 E-value=1.1e-05 Score=66.24 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+.+++|+|++||||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999865
No 297
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.74 E-value=4.4e-05 Score=62.33 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=38.4
Q ss_pred HHHHHHHHHhc--CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 85 LDDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 85 ls~~la~aL~~--~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
.+++||++++. +..|+++|+|||++ ||+.+...+. ++++++.+. .+++++
T Consensus 71 qr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~-~~l~~~~~~-~~~ivi 123 (173)
T 3kta_B 71 ALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVA-DLIKESSKE-SQFIVI 123 (173)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTTT-SEEEEE
T ss_pred HHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHH-HHHHHhccC-CEEEEE
Confidence 33888988873 11579999999999 9999999998 888888554 445444
No 298
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.74 E-value=0.00049 Score=67.18 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHhhhhh
Q 025642 208 AKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSMVWCL 248 (250)
Q Consensus 208 ~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 248 (250)
..+..++...+.+-.++.+.+.+..+..-+..++..+.+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~l 272 (665)
T 2dy1_A 232 EALEKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEAL 272 (665)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhC
Confidence 34555666666666678888889888888888888876654
No 299
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.74 E-value=4.3e-05 Score=65.15 Aligned_cols=40 Identities=8% Similarity=-0.067 Sum_probs=30.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~ 41 (250)
+..+.+.|++|+||||++-.++..+...+-+|.+...||.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETH 45 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence 4678899999999999976666655444557888878873
No 300
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.72 E-value=2.6e-06 Score=76.13 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC----CCCCceEEEe
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIV 36 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l----~~~~G~i~i~ 36 (250)
.+++.||||+|||||+++++|.+ .+.+|++...
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 47899999999999999999987 5555555443
No 301
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.71 E-value=7.9e-05 Score=68.95 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|.+|+|||||++.+.|-
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Confidence 56899999999999999999974
No 302
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.70 E-value=0.00012 Score=57.18 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=52.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhhh
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN 84 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~~ 84 (250)
+.|.||+|+|||++.+.+.......++.+. .+-.. .... . .
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~------~~~~--------------------~------------~ 67 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELT------PDNA--------------------P------------Q 67 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC------TTTS--------------------S------------C
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCC------CCcc--------------------h------------h
Confidence 679999999999999999987655444443 22110 0000 0 0
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 85 LDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 85 ls~~la~aL~~~~~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
....+..+ +..++++||...+++..+..+. +.++.. ..+.+++++.
T Consensus 68 ~~~~~~~a-----~~g~l~ldei~~l~~~~q~~Ll-~~l~~~-~~~~~~I~~t 113 (145)
T 3n70_A 68 LNDFIALA-----QGGTLVLSHPEHLTREQQYHLV-QLQSQE-HRPFRLIGIG 113 (145)
T ss_dssp HHHHHHHH-----TTSCEEEECGGGSCHHHHHHHH-HHHHSS-SCSSCEEEEE
T ss_pred hhcHHHHc-----CCcEEEEcChHHCCHHHHHHHH-HHHhhc-CCCEEEEEEC
Confidence 10112212 5579999999999988887766 554221 2345565543
No 303
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.70 E-value=1.3e-05 Score=64.53 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~ 28 (250)
..++|+|++||||||+++.+++.+++
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46889999999999999999998766
No 304
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.68 E-value=0.0001 Score=65.51 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
++.|.||+|||||||+..++...
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHhHHHHHHHHHH
Confidence 57899999999999999888653
No 305
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.68 E-value=0.00016 Score=67.15 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHc
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g 24 (250)
...++|+|++|+|||||++.+.|
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35789999999999999999987
No 306
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.67 E-value=0.0002 Score=65.11 Aligned_cols=116 Identities=14% Similarity=0.148 Sum_probs=63.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~~ 83 (250)
++.|.||+|+|||||+..++......++.+.+...+...+ .. .++++|+....-.+.. .....
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~-----------~~-----~a~~~g~d~~~l~i~~-~~~~e 138 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-----------PV-----YARALGVNTDELLVSQ-PDNGE 138 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-----------HH-----HHHHTTCCGGGCEEEC-CSSHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh-----------HH-----HHHHcCCCHHHceeec-CCcHH
Confidence 5778999999999999877765444456777766543111 00 2344554322100000 01112
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCccCH----H---------hHHHHHHHHHHHH----HhCCCeEEEEE
Q 025642 84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL----F---------THVPVLRNFVDHL----KSRNFNVCAVY 137 (250)
Q Consensus 84 ~ls~~la~aL~~~~~~~~lllDEPt~LD~----~---------~~~~i~~~ll~~l----~~~~~~vi~v~ 137 (250)
++ .++++.+....+++++|+|..+.+-+ . .+...+.+++++| ++.+.+++++.
T Consensus 139 ~~-l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 139 QA-LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp HH-HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred HH-HHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 23 34455554322789999999998432 0 1212233556665 34577776664
No 307
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.67 E-value=1e-05 Score=67.24 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc--eEEEe
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIV 36 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~i~i~ 36 (250)
..++|+|++||||||+++.|++.+.|..| .+.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 56889999999999999999998876666 55554
No 308
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.65 E-value=1.8e-05 Score=72.99 Aligned_cols=49 Identities=8% Similarity=0.168 Sum_probs=38.4
Q ss_pred HHHHHHHhcC--CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 87 DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 87 ~~la~aL~~~--~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
+.||++++.. .+|+++|+|||++ ||+..+..+. ++++++.+.+.+++++
T Consensus 342 ~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~~ii~ 393 (430)
T 1w1w_A 342 AALALLFAINSYQPSPFFVLDEVDAALDITNVQRIA-AYIRRHRNPDLQFIVI 393 (430)
T ss_dssp HHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHH-HHHHHHCBTTBEEEEE
T ss_pred HHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHH-HHHHHHhcCCCEEEEE
Confidence 7888888720 1799999999999 9999998888 8888875556666555
No 309
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.65 E-value=5.7e-05 Score=67.19 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=55.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC------CceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCC-CCchh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV------RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPN-GGLIY 76 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~------~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~-g~~~~ 76 (250)
.+.|.||+|+||||+++.++..+... ...+...+-.. ..+..+. +.++.+.++.... .+.
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~~~~~~~--~~~l~~~l~~~~~~~~~-- 112 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH---------RETPYRV--ASAIAEAVGVRVPFTGL-- 112 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT---------SCSHHHH--HHHHHHHHSCCCCSSCC--
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc---------CCCHHHH--HHHHHHHhCCCCCCCCC--
Confidence 47899999999999999999866432 22222222111 0111222 4455666655321 111
Q ss_pred hhhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCccCHHh-HHHHHHHHHHHH
Q 025642 77 CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-HVPVLRNFVDHL 126 (250)
Q Consensus 77 ~~~~~~~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~-~~~i~~~ll~~l 126 (250)
....+...+...+.....+.++++||...+.... ....+..+++..
T Consensus 113 ----~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 113 ----SVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp ----CHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred ----CHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 1111113334444332146699999999865441 233343555544
No 310
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.64 E-value=0.00031 Score=60.38 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
-.+.|.||+|+||||+++.+++.+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 357899999999999999999865
No 311
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.64 E-value=2.7e-05 Score=61.76 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 025642 4 AQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g 24 (250)
..+|+|||||||||++.+|.-
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999874
No 312
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.63 E-value=1.6e-05 Score=70.11 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCC---ceEEEeecCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR---RTMHIVNLDP 40 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~---G~i~i~~~dp 40 (250)
+++++|.||+||||||+++.|.+++.+.+ ..+.++.+|.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~ 72 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD 72 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccc
Confidence 47899999999999999999999987631 2344446654
No 313
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.63 E-value=9.3e-05 Score=67.67 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|..|+|||||++.+.+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHhCh
Confidence 56899999999999999999874
No 314
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.62 E-value=8.3e-05 Score=65.84 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCceEEE
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHI 35 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~i~i 35 (250)
-.+.+.||+|+|||+|+++++.... ..+.++.+
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~ 186 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTL 186 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEE
Confidence 3578999999999999999998655 33334433
No 315
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.79 E-value=7.8e-06 Score=66.90 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=40.4
Q ss_pred cCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHh
Q 025642 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSM 244 (250)
Q Consensus 165 ~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~ 244 (250)
+.|.+-|.||+|+.......+...+... ... -.+...++.+.++...|.+++..+.+.+..+...+
T Consensus 134 ~~piilv~NK~Dl~~~~~~~~~~~~~~~----~~v----------~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l 199 (204)
T 3th5_A 134 NTPIILVGTKLDLRDDKDTIEKLKEKKL----TPI----------TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199 (204)
Confidence 7899999999999764311111110000 000 01222234445565688899999998888888776
Q ss_pred hhh
Q 025642 245 VWC 247 (250)
Q Consensus 245 ~~~ 247 (250)
.+.
T Consensus 200 ~~~ 202 (204)
T 3th5_A 200 IRA 202 (204)
Confidence 553
No 316
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.62 E-value=2.8e-05 Score=61.52 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.++|+|++||||||+++.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 317
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.61 E-value=2.3e-05 Score=63.82 Aligned_cols=39 Identities=18% Similarity=0.074 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~ 41 (250)
.+++|+|++||||||++..+.+.++..+-+|.+...++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 578999999999999999999988766557777776653
No 318
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.59 E-value=3.4e-05 Score=61.68 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
|+..+.|+|++||||||+.+.++..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356789999999999999999998654
No 319
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.59 E-value=3.7e-05 Score=65.24 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEe
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~ 36 (250)
..++|.||+||||||+++.|++.+.+ ++++...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 56889999999999999999999988 7777543
No 320
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.56 E-value=3.6e-05 Score=60.58 Aligned_cols=20 Identities=40% Similarity=0.590 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 025642 3 YAQLVIGPAGSGKSTYCSSL 22 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l 22 (250)
.+++|.||+||||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46889999999999999999
No 321
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.55 E-value=0.00047 Score=67.65 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.+-++|+|++|+|||||++.+.|.-
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678999999999999999999853
No 322
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.55 E-value=5.3e-05 Score=68.76 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=33.1
Q ss_pred HHHHHHHh---------cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025642 87 DWLAEELD---------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (250)
Q Consensus 87 ~~la~aL~---------~~~~~~~lllDEPt~-LD~~~~~~i~~~ll~~l 126 (250)
+.||++|+ . +|+++|+|||++ ||+..+..++ +++..+
T Consensus 274 l~lA~~La~~~l~~~~~~--~p~iLLLDEp~s~LD~~~~~~l~-~~l~~~ 320 (359)
T 2o5v_A 274 VALALRRAELELLREKFG--EDPVLLLDDFTAELDPHRRQYLL-DLAASV 320 (359)
T ss_dssp HHHHHHHHHHHHHHHHHS--SCCEEEECCGGGCCCHHHHHHHH-HHHHHS
T ss_pred HHHHHHHHHhhhhhhccC--CCCEEEEeCccccCCHHHHHHHH-HHHHhc
Confidence 88999999 7 999999999999 9999998888 776665
No 323
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.53 E-value=0.00037 Score=63.85 Aligned_cols=112 Identities=8% Similarity=0.133 Sum_probs=59.8
Q ss_pred CCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccc-ccHHHHHHhhHHhhhhHhHhcC-CeeeecCchh
Q 025642 99 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLEL-PHVNILSKMD 176 (250)
Q Consensus 99 ~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~-~d~~~~~s~~l~~~~~~~~~~~-p~v~vlsK~D 176 (250)
..+.++|.||. ..+.+..++.+..-+..+ .++|+..- ..+...-...+ + -.++. |.+-|+||+|
T Consensus 83 ~~i~iiDtPGh------~~f~~~~~~~~~~~D~~i---lVvda~~g~~~~qt~e~l~~--~---~~~~~~~iivviNK~D 148 (410)
T 1kk1_A 83 RRVSFIDAPGH------EALMTTMLAGASLMDGAI---LVIAANEPCPRPQTREHLMA--L---QIIGQKNIIIAQNKIE 148 (410)
T ss_dssp EEEEEEECSSH------HHHHHHHHHCGGGCSEEE---EEEETTSCSSCHHHHHHHHH--H---HHHTCCCEEEEEECGG
T ss_pred cEEEEEECCCh------HHHHHHHHhhhhhCCEEE---EEEECCCCCCChhHHHHHHH--H---HHcCCCcEEEEEECcc
Confidence 46899999995 223323334333323333 23454431 13333321111 1 12344 5677899999
Q ss_pred hhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhc--CCceeEEeecCCHHHHHHHHHHhhhhh
Q 025642 177 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESRYFLYLSSMVWCL 248 (250)
Q Consensus 177 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~--~~~~f~~l~~~~~~~~~~~~~~~~~~~ 248 (250)
+.... ..+. .+ +.+.+++..+ .-+.|+|++..+.+.+..|+..+++.+
T Consensus 149 l~~~~-~~~~-------------------~~----~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 149 LVDKE-KALE-------------------NY----RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp GSCHH-HHHH-------------------HH----HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCCHH-HHHH-------------------HH----HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 97543 1100 01 1122233332 237899999999999999988887654
No 324
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.53 E-value=0.0001 Score=69.74 Aligned_cols=49 Identities=20% Similarity=0.064 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCCC--CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 85 LDDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 85 ls~~la~aL~~~~~~--~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+++.||++++. +| +++|||||++ ||+.+...+. ++++++++ |.+|++|.
T Consensus 404 qrv~la~~l~~--~~~~~~lilDEp~~gld~~~~~~i~-~~l~~~~~-~~~vi~it 455 (517)
T 4ad8_A 404 SRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLAD-TRQVLVVT 455 (517)
T ss_dssp HHHHHHHHHHH--CCCSSEEEECSCSSSCCTHHHHHHH-HHHHHHHH-HSEEEEEC
T ss_pred HHHHHHHHHHh--CCCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHhC-CCEEEEEe
Confidence 34899999999 99 9999999999 9999999998 89999877 78887663
No 325
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.53 E-value=0.00029 Score=65.45 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|.+|+|||||++.+.|-
T Consensus 196 ~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 196 IQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceeEEecCCCCCHHHHHHHHhCC
Confidence 45789999999999999999864
No 326
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.53 E-value=0.00095 Score=64.38 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
..++|+|+.|+|||||++.+.+
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~ 27 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRG 27 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHhc
Confidence 6789999999999999999986
No 327
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.52 E-value=5.5e-05 Score=59.77 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+-++++|++|+|||||++.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999999999999999853
No 328
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.51 E-value=4.6e-05 Score=62.59 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.++|+||+||||||+.+.+++.+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 67899999999999999999865
No 329
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.50 E-value=5.6e-05 Score=60.80 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
|+..++|.|++||||||+++.++..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998743
No 330
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.50 E-value=5.5e-05 Score=60.92 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
...++++|++||||||+++.++..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998643
No 331
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.50 E-value=0.00024 Score=61.56 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
-.+.|.||+|+||||+++.+++..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 368899999999999999999865
No 332
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.49 E-value=0.0002 Score=55.87 Aligned_cols=39 Identities=10% Similarity=0.007 Sum_probs=28.3
Q ss_pred CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025642 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (250)
Q Consensus 98 ~~~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~ 137 (250)
+..++++||...+....+..+. +++++..+.+.+++++.
T Consensus 75 ~~~~l~lDei~~l~~~~q~~Ll-~~l~~~~~~~~~iI~~t 113 (143)
T 3co5_A 75 EGGVLYVGDIAQYSRNIQTGIT-FIIGKAERCRVRVIASC 113 (143)
T ss_dssp TTSEEEEEECTTCCHHHHHHHH-HHHHHHTTTTCEEEEEE
T ss_pred CCCeEEEeChHHCCHHHHHHHH-HHHHhCCCCCEEEEEec
Confidence 5679999999999988887776 66666433456666554
No 333
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.46 E-value=0.00017 Score=62.97 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=43.5
Q ss_pred cCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHh
Q 025642 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSM 244 (250)
Q Consensus 165 ~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~ 244 (250)
+.|.+-|.||+|+.......+.+ ....... -. .....++.+.++...|.+++..+.+.+..++..+
T Consensus 259 ~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~-v~----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 324 (332)
T 2wkq_A 259 NTPIILVGTKLDLRDDKDTIEKL---------KEKKLTP-IT----YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 324 (332)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHH---------HHTTCCC-CC----HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCcEEEEEEchhcccccchhhhc---------ccccccc-cc----HHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHH
Confidence 78999999999997654111111 0000000 01 1223344556777899999999999999988877
Q ss_pred hhh
Q 025642 245 VWC 247 (250)
Q Consensus 245 ~~~ 247 (250)
-+.
T Consensus 325 ~~~ 327 (332)
T 2wkq_A 325 IRA 327 (332)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 334
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.46 E-value=7e-05 Score=62.15 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHc
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+++++|.|++||||||+++.+++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999998
No 335
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.46 E-value=4.4e-05 Score=63.01 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
..++|+||+||||||+++.|...++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4578999999999999999998764
No 336
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.46 E-value=6.3e-05 Score=61.48 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
|+.+++|.|++||||||+.+.+++.+
T Consensus 1 m~~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 1 MRGIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 66689999999999999999998854
No 337
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.46 E-value=0.00031 Score=65.81 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|..|+|||||++.+.+.
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999765
No 338
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.45 E-value=5e-05 Score=60.87 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.++|+||+||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998754
No 339
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.45 E-value=1.7e-05 Score=65.31 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEe
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~ 36 (250)
.++|.|++||||||+++.|...+...+.++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 578999999999999999999886655555443
No 340
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.44 E-value=7.6e-05 Score=60.11 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+..++|.|++||||||+++.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998643
No 341
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.44 E-value=5.8e-05 Score=59.95 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
|+..++|.|++||||||+.+.++..+
T Consensus 1 m~~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 1 MTEPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 55678999999999999999998754
No 342
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.44 E-value=9e-05 Score=68.61 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
+-++|+|+||+|||||++.+.|...
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcc
Confidence 5689999999999999999999753
No 343
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.44 E-value=0.00046 Score=63.80 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++++|..|+|||||++.+.+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~ 28 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLM 28 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHH
Confidence 5689999999999999999975
No 344
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.42 E-value=8.3e-05 Score=60.02 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+..++|.|++||||||+.+.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999998754
No 345
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.42 E-value=0.0009 Score=56.46 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.+.|.||+|+||||+++.++..+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999854
No 346
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.42 E-value=6.2e-05 Score=64.43 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEee
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~ 37 (250)
+..++++|++||||||+.+.|++.+. .+.+.+++
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 46789999999999999999998764 23444443
No 347
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.42 E-value=0.00054 Score=62.72 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|..++|||||++.+.|.
T Consensus 9 ~~I~iiG~~d~GKSTLi~~L~g~ 31 (408)
T 1s0u_A 9 VNIGMVGHVDHGKTSLTKALTGV 31 (408)
T ss_dssp EEEEEESCTTSSHHHHHHHHHSC
T ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Confidence 56899999999999999999975
No 348
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.41 E-value=9.7e-05 Score=60.09 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+..++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999999985
No 349
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.40 E-value=6e-05 Score=60.74 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
|...++|+|++||||||+.+.++..+
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 55678999999999999999998643
No 350
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.39 E-value=0.0015 Score=64.73 Aligned_cols=77 Identities=9% Similarity=0.144 Sum_probs=43.5
Q ss_pred CCCEEEEeCCCccC------HHhHHHHHHHHHHHHHhCCCeEEEEEeccccc-cccHHHHHHhhHHhhhhHhHhcCCeee
Q 025642 98 DDDYLVFDCPGQIE------LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVN 170 (250)
Q Consensus 98 ~~~~lllDEPt~LD------~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~-~~d~~~~~s~~l~~~~~~~~~~~p~v~ 170 (250)
.+++.+.|.||-.. +......+.+++.........+ +++++|+.. ...... +......-..+.|.+-
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDl-IL~VVDAs~~~~~~d~-----l~ll~~L~~~g~pvIl 222 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCL-ILAVSPANSDLANSDA-----LKIAKEVDPQGQRTIG 222 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEE-EEEEEETTSCSSSCHH-----HHHHHHHCTTCSSEEE
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcE-EEEEEcCCCCcchhHH-----HHHHHHHHhcCCCEEE
Confidence 56899999999733 2111222335566555444444 445577654 222221 0011122245789999
Q ss_pred ecCchhhhcc
Q 025642 171 ILSKMDLVTN 180 (250)
Q Consensus 171 vlsK~Dl~~~ 180 (250)
|+||+|++++
T Consensus 223 VlNKiDlv~~ 232 (772)
T 3zvr_A 223 VITKLDLMDE 232 (772)
T ss_dssp EEECTTSSCT
T ss_pred EEeCcccCCc
Confidence 9999999864
No 351
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.39 E-value=0.00013 Score=64.43 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
+.+.||+|+||||+++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998754
No 352
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.39 E-value=6.7e-05 Score=60.87 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+..++|.|++||||||+++.++..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998754
No 353
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.38 E-value=8.1e-05 Score=59.86 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+-++|+|++|+|||||++.+++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999999864
No 354
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.38 E-value=3.4e-05 Score=71.53 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHc
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g 24 (250)
++-++|+|+.|+|||||++.+.+
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~ 56 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVG 56 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHc
Confidence 35689999999999999887765
No 355
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.36 E-value=0.00073 Score=60.15 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++|+|++|+|||||++.+.+
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCS
T ss_pred ceEEEECCCCccHHHHHHHHhC
Confidence 5689999999999999998864
No 356
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.36 E-value=9.5e-05 Score=61.42 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+.+|+|||||||||++.+|.-.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998643
No 357
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.34 E-value=0.00011 Score=59.04 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
..++|.|++||||||+++.|+..+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999988553
No 358
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.34 E-value=0.00012 Score=59.69 Aligned_cols=30 Identities=30% Similarity=0.255 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM 33 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i 33 (250)
..++|.|++||||||+++.|+..+... |.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~ 34 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK-RDV 34 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT-SCE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc-CCE
Confidence 678999999999999999999876543 344
No 359
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.33 E-value=0.00011 Score=59.18 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+..++++||+||||||+.+.++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999998654
No 360
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.33 E-value=0.00011 Score=59.69 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
.++|.|++||||||+++.|++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999998653
No 361
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.32 E-value=0.00011 Score=62.87 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
++.++|.||+||||||+++.+++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999654
No 362
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0011 Score=64.24 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|+.|+|||||++.+.+-
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSC
T ss_pred eEEEEEECCCCCHHHHHHHHHHh
Confidence 56899999999999999999865
No 363
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.31 E-value=0.00013 Score=58.66 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~ 28 (250)
..++|.|++||||||+++.|+..+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35789999999999999999987653
No 364
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.31 E-value=0.0001 Score=67.29 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i 35 (250)
+++|+||||||||||++.++|. .+|.+..
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 6899999999999999999985 3576654
No 365
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.29 E-value=0.00012 Score=62.84 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
-.++|+||+||||||+.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 367899999999999999998754
No 366
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.29 E-value=0.00014 Score=63.15 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHc
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g 24 (250)
|+..++|.|++||||||+.+.++.
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 778899999999999999999987
No 367
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.28 E-value=0.00037 Score=63.05 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=35.9
Q ss_pred HHHHHHhcCCC-CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025642 88 WLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (250)
Q Consensus 88 ~la~aL~~~~~-~~~lllDEPt~-LD~~~~~~i~~~ll~~l~~~~~~vi~v 136 (250)
++|+++.. + |+++|||||++ +|+..+..+. ++++++.+ +.+++++
T Consensus 296 a~a~~l~~--~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~-~~~vi~~ 342 (371)
T 3auy_A 296 AIANALIG--NRVECIILDEPTVYLDENRRAKLA-EIFRKVKS-IPQMIII 342 (371)
T ss_dssp HHHHHHHS--SCCSEEEEESTTTTCCHHHHHHHH-HHHHHCCS-CSEEEEE
T ss_pred HHHHHHhc--CCCCeEEEeCCCCcCCHHHHHHHH-HHHHHhcc-CCeEEEE
Confidence 56778887 8 99999999999 9999999988 77777643 3456544
No 368
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.28 E-value=0.00016 Score=61.73 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
+++++|.|++||||||+++.|+..+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 47899999999999999999988543
No 369
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.28 E-value=0.00043 Score=64.78 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++|+|++|+|||||++.+.|
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~ 246 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQ 246 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHhC
Confidence 4589999999999999999987
No 370
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.27 E-value=0.00033 Score=65.37 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|..|+|||||++.+.+.
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999999863
No 371
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.26 E-value=0.00023 Score=65.82 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|..|+|||||++.+.+-
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHhh
Confidence 46899999999999999999864
No 372
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.25 E-value=0.0002 Score=64.50 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
|+..++|.||+||||||+.+.|+..+.
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcC
Confidence 457899999999999999999998663
No 373
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.25 E-value=0.00014 Score=66.96 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|+||+|||||++.++|.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 45899999999999999999987
No 374
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.25 E-value=0.00015 Score=59.27 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+..++|+|++||||||+++.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998754
No 375
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.24 E-value=0.00047 Score=68.75 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~ 28 (250)
.++|+||||+||||+++++++.+..
T Consensus 240 ~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCC
Confidence 5889999999999999999998643
No 376
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.24 E-value=0.00052 Score=57.27 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=33.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~ 41 (250)
|+ ++|.|..|+||||+.-.++..+...+.+|.++..||+
T Consensus 1 mk--I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 1 MK--LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp CE--EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred CE--EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 55 3448999999999999999988877789999999995
No 377
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.24 E-value=0.00017 Score=58.69 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
..++|.|+.||||||+++.++..+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999977
No 378
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.23 E-value=0.00042 Score=62.37 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (250)
.+.|.|++|+|||||+..++......++.|.+....
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 478999999999999998887655556677776543
No 379
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.23 E-value=0.0016 Score=60.14 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
.++|+|.+|+|||||++.+.|-
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999873
No 380
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.21 E-value=0.00014 Score=65.98 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEee
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~ 37 (250)
-++|+||+||||||+++.+.+...+.++.|.+.+
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 3689999999999999999988878888887753
No 381
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.21 E-value=0.00018 Score=58.18 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
..++|.|++||||||+++.++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998754
No 382
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.21 E-value=0.00015 Score=63.43 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+..++|.||+||||||+++.++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998754
No 383
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.20 E-value=0.00017 Score=58.31 Aligned_cols=25 Identities=36% Similarity=0.235 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~ 28 (250)
.++|.|+.||||||+++.++..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999987644
No 384
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.20 E-value=0.00017 Score=60.80 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
..++|+|++||||||+++.+++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999974
No 385
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.20 E-value=0.00027 Score=64.23 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcC
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
|.+-++|+|.+|+|||||++.+++-
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 6778999999999999999999983
No 386
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.20 E-value=0.00019 Score=58.82 Aligned_cols=26 Identities=31% Similarity=0.212 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
...++|.|++||||||+++.++..+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999987543
No 387
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.20 E-value=0.00015 Score=62.59 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
-.++|+|++||||||+.+.|++.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999999865
No 388
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.19 E-value=0.00019 Score=58.23 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
..++|+|++||||||+.+.++..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999975
No 389
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.19 E-value=8.7e-05 Score=70.76 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEee
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~ 37 (250)
.++++||||+||||+++++++.+.+..|.+.+.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 5789999999999999999999877777765544
No 390
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.17 E-value=0.00019 Score=59.18 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l 26 (250)
++|+||+|||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5799999999999999987654
No 391
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.16 E-value=0.00024 Score=58.07 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
..++|.|++||||||+++.|+..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999998654
No 392
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.16 E-value=0.00072 Score=54.66 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+.|.||+|+||||+++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998754
No 393
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.15 E-value=0.0002 Score=59.84 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+++|+||+||||+|.++.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999754
No 394
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.14 E-value=0.00022 Score=58.90 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.++|.||+||||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999997643
No 395
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.12 E-value=0.00024 Score=57.18 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
.++|.|++||||||+++.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998653
No 396
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.12 E-value=8.7e-05 Score=65.99 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (250)
+++.||+|+||||+++++++.+.+..+.+.+.+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 68999999999999999999887766655554444
No 397
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.11 E-value=0.00033 Score=57.77 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
..++++|++|||||||++.+.+..... .++.+.+.||
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~ 67 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV 67 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence 578999999999999999998865433 4566655554
No 398
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.11 E-value=0.00025 Score=59.87 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
-++.|+||+||||||.++.|+..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999998754
No 399
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.10 E-value=0.00025 Score=60.30 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
.++|.||+|+||||+++++++...
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 678999999999999999998753
No 400
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.10 E-value=0.00095 Score=66.26 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
.++++||+||||||++..+.+...
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999998888865433
No 401
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.10 E-value=0.00025 Score=58.64 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.++|+||+||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999997654
No 402
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.09 E-value=0.00015 Score=57.95 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=17.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
..++|.|++||||||+.+.++..+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999998654
No 403
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.08 E-value=0.00029 Score=58.21 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
++++|+|+.||||||+.+.++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999975
No 404
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.08 E-value=0.0051 Score=54.40 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
-++.+.||+|+||||+++.++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 368899999999999999999865
No 405
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.08 E-value=0.0016 Score=57.36 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
-++.|.||+|||||||+..++.
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999998875
No 406
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.08 E-value=0.00024 Score=59.14 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
..++|+||+||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999998754
No 407
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.07 E-value=0.0022 Score=57.38 Aligned_cols=119 Identities=12% Similarity=0.133 Sum_probs=60.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCCC-CCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhh
Q 025642 4 AQLVIGPAGSGKSTYCSSLYR-HCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g-~l~~-~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~ 81 (250)
++.|.||+|||||||+-.++. ..+. .+|.+.++.-. +.+ .+ ..++++|+....-.+. ....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E---~s~--~~-----------~ra~~lGvd~d~llv~-~~~~ 92 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE---FGI--TP-----------AYLRSMGVDPERVIHT-PVQS 92 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS---CCC--CH-----------HHHHHTTCCGGGEEEE-ECSB
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc---chh--hH-----------HHHHHhCCCHHHeEEE-cCCC
Confidence 467999999999999655443 3322 14555554211 111 11 1366677654321111 1111
Q ss_pred hhhHHHHHHHHH--hcCCCCCEEEEeCCCccCH--------H-------hHHHHHHHHH----HHHHhCCCeEEEEEec
Q 025642 82 EDNLDDWLAEEL--DNYLDDDYLVFDCPGQIEL--------F-------THVPVLRNFV----DHLKSRNFNVCAVYLL 139 (250)
Q Consensus 82 ~~~ls~~la~aL--~~~~~~~~lllDEPt~LD~--------~-------~~~~i~~~ll----~~l~~~~~~vi~v~l~ 139 (250)
.+++..++++.+ ....+|+++++|--+++=+ . .+...+.+.+ ..+++.+.+++++..+
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 122213445555 3323799999998777311 0 2222222333 3345678888887533
No 408
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.07 E-value=0.00031 Score=59.72 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+..++|.||+||||||+++.|+..+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3678999999999999999998644
No 409
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.07 E-value=0.0019 Score=66.74 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|+.|+|||||++.+.+.
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Confidence 56899999999999999999864
No 410
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.07 E-value=0.00026 Score=56.83 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.++|+|++||||||+++.++..+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998543
No 411
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.06 E-value=0.00029 Score=58.85 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
..++|.|++||||||+++.|+..+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999998754
No 412
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.06 E-value=0.0027 Score=60.08 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|.+|+|||||++.+.+-
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999863
No 413
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.06 E-value=0.0003 Score=58.41 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
..++|+|++||||||+++.|+..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999998754
No 414
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.06 E-value=0.002 Score=54.49 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEe
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~ 36 (250)
.++.+.||.||||||++-.++.-+...+.+|.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4678899999999998766665444444566665
No 415
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.05 E-value=0.00022 Score=61.21 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
..++|.|++||||||+.+.++..+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999997643
No 416
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.04 E-value=0.00031 Score=57.55 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
..++|.|++||||||+++.|+..+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999997653
No 417
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.04 E-value=0.001 Score=61.14 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETV 29 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~ 29 (250)
+.+|+|||||||||++++|+++..+.
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHhhhccc
Confidence 57899999999999999999987664
No 418
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.03 E-value=0.00034 Score=60.92 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHc
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g 24 (250)
++.++|.|++||||||+++.++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 419
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.03 E-value=0.00041 Score=65.61 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (250)
-+++|+||||+|||||++++++... .+.+.+.+.+
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~ 99 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 99 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhH
Confidence 3689999999999999999999864 5777777654
No 420
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.02 E-value=0.00077 Score=64.09 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
.-++|+|+.|+|||||++.+.+.
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 46899999999999999999875
No 421
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.01 E-value=0.00067 Score=61.49 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 025642 4 AQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g 24 (250)
+.+|+|||||||||++++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 678999999999999999997
No 422
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.00 E-value=0.00038 Score=54.93 Aligned_cols=23 Identities=43% Similarity=0.323 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.++|.|++||||||+.+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 423
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.98 E-value=0.0005 Score=56.02 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++++|++|+|||||++.+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999976
No 424
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.97 E-value=0.00042 Score=54.92 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.++|.|++||||||+.+.|+..+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998743
No 425
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.96 E-value=0.0023 Score=69.16 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCccCCCCCCcccChhhhhhHHHHHHHhCCCCCCCchhhhhhhh
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~~~~~y~~~~~i~~~i~~~~vm~~~~L~~~g~~~~~~~~~~ 82 (250)
-++.|.||+|+|||||+..++.-....++.+.+....- .+.... ++.+|+....=.+.+.+ ..
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~---------------~~~~l~-a~~~G~dl~~l~v~~~~-~~ 1490 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH---------------ALDPIY-ARKLGVDIDNLLCSQPD-TG 1490 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS---------------CCCHHH-HHHTTCCTTTCEEECCS-SH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc---------------ccCHHH-HHHcCCCchhceeecCC-hH
Confidence 36889999999999999888664444556666553210 000001 34445332211111111 11
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCccCHHh-------------H----HHHHHHHHHHHHhCCCeEEEEEec
Q 025642 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-------------H----VPVLRNFVDHLKSRNFNVCAVYLL 139 (250)
Q Consensus 83 ~~ls~~la~aL~~~~~~~~lllDEPt~LD~~~-------------~----~~i~~~ll~~l~~~~~~vi~v~l~ 139 (250)
++. .++++.++....|+++++||-..+-+.. . .+.+.++...+.+.+.+++.++..
T Consensus 1491 E~~-l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~ 1563 (2050)
T 3cmu_A 1491 EQA-LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1563 (2050)
T ss_dssp HHH-HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECE
T ss_pred HHH-HHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEccc
Confidence 233 4555555422289999999987643321 2 233446666666678888877654
No 426
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.94 E-value=0.00043 Score=57.89 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 427
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.92 E-value=0.0063 Score=59.59 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
..++|+|+.|+|||||++.+..
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~ 34 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILY 34 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999984
No 428
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.92 E-value=0.0005 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 56899999999999999999863
No 429
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.92 E-value=0.00012 Score=64.30 Aligned_cols=38 Identities=18% Similarity=0.099 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (250)
+++++|.||+||||||+++.+...+...+-++.+...|
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D 42 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence 36899999999999999999987543222235554444
No 430
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.90 E-value=0.00036 Score=63.08 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G 31 (250)
|-++|+|++|+|||||++.|.+......+
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC----
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 55799999999999999999886544333
No 431
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.90 E-value=0.00054 Score=61.29 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
|+..++|+||+||||||+.+.++..+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 55689999999999999999999865
No 432
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.89 E-value=0.0036 Score=55.00 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~ 32 (250)
.+.|.||+|+|||++.+.+.......++.
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~ 55 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSARSDRP 55 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSSCSSSC
T ss_pred cEEEECCCCchHHHHHHHHHHhCcccCCC
Confidence 46799999999999999999865443333
No 433
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.88 E-value=0.00047 Score=57.06 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 025642 5 QLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l 26 (250)
++|.|++||||||+++.|+..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998754
No 434
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=96.86 E-value=0.0027 Score=61.26 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=16.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
.-++|+|+.|+|||||+..+.+.
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~ 27 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQI 27 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999864
No 435
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.86 E-value=0.00056 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 436
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.84 E-value=0.00055 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999863
No 437
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.84 E-value=0.00066 Score=53.39 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.+.+-
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999863
No 438
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.84 E-value=0.00076 Score=56.04 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH-cCC--C--CCC-ceEEEeecC
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLY-RHC--E--TVR-RTMHIVNLD 39 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~-g~l--~--~~~-G~i~i~~~d 39 (250)
|+.++.+.|++||||||++..+. ... . ..+ +.+++.|.+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 56788999999999999987653 221 1 223 556666644
No 439
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.84 E-value=0.00058 Score=56.75 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
..++|+|++||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998755
No 440
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.82 E-value=0.0006 Score=53.60 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++|+|++|+|||||++.+.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999976
No 441
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.82 E-value=0.0052 Score=54.37 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~ 28 (250)
..+.|.||+|+||||+++.++..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35789999999999999999886543
No 442
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.82 E-value=0.0025 Score=51.64 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=32.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCc
Q 025642 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (250)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~ 41 (250)
|+.+.+.-+..|+||||+.-.++..+...+.+|.+.+.||.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQ 41 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 55444444778899999999999888776678999988874
No 443
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.81 E-value=0.00075 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++++|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6789999999999999999975
No 444
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.81 E-value=0.00069 Score=52.56 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++++|+.|+|||||++.+.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5689999999999999999986
No 445
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.80 E-value=0.00043 Score=54.85 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++++|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6689999999999999998763
No 446
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.80 E-value=0.00076 Score=55.68 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp 40 (250)
+.++|+|++|+|||||++.+.+..... ..+.+.+.++
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~ 75 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDV 75 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEET
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCC
Confidence 678999999999999999998765433 4455555443
No 447
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.78 E-value=0.00058 Score=56.39 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+++++|+|++||||||+.+.++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998754
No 448
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.77 E-value=0.0012 Score=55.02 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC-CCCCCceEEEeecC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLD 39 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~-l~~~~G~i~i~~~d 39 (250)
.+.|.|++|+|||||+.-++-. ....++.+.+...+
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 5789999999999998765421 22223456555433
No 449
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.77 E-value=0.00083 Score=52.78 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++|+|++|+|||||++.+.+
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 5689999999999999999986
No 450
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.76 E-value=0.0026 Score=56.92 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
.+.|.||+|+|||||+..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4679999999999999998753
No 451
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.74 E-value=0.00071 Score=61.16 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 025642 4 AQLVIGPAGSGKSTYCSSLY 23 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~ 23 (250)
..+|+|||||||||++.+|.
T Consensus 27 l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999987
No 452
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.73 E-value=0.004 Score=55.83 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
-.+.|.||+|+||||+++.++...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 367899999999999999999865
No 453
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.72 E-value=0.00085 Score=56.33 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
..++|+|++||||||+.+.|+..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999998764
No 454
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.72 E-value=0.00085 Score=53.24 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999873
No 455
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.70 E-value=0.0008 Score=58.91 Aligned_cols=24 Identities=29% Similarity=0.639 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
-++.+.||+|+||||+++++++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHh
Confidence 368899999999999999999875
No 456
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.70 E-value=0.0084 Score=52.85 Aligned_cols=34 Identities=9% Similarity=0.178 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEee
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~ 37 (250)
.+.|.|++|+|||||+..++......++.+.+..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 5789999999999999888754333334555544
No 457
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.69 E-value=0.005 Score=59.43 Aligned_cols=67 Identities=16% Similarity=0.278 Sum_probs=38.0
Q ss_pred CEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHhhHHhhhhHhHhcCCeeeecCchhhhc
Q 025642 100 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 179 (250)
Q Consensus 100 ~~lllDEPt~LD~~~~~~i~~~ll~~l~~~~~~vi~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~v~vlsK~Dl~~ 179 (250)
.+-|+|.||..|... ...+.++.-...++ ++|+..-..+..... +. .....+.|.+.|+||+|+..
T Consensus 74 ~inliDTPGh~dF~~------ev~r~l~~aD~aIL---VVDa~~gv~~qt~~~-~~----~a~~~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 74 KLHLIDTPGHVDFSY------EVSRALAACEGALL---LIDASQGIEAQTVAN-FW----KAVEQDLVIIPVINKIDLPS 139 (600)
T ss_dssp EEEEECCCCSGGGHH------HHHHHHHTCSEEEE---EEETTTBCCHHHHHH-HH----HHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEECCCcHhHHH------HHHHHHHhCCEEEE---EEECCCCccHHHHHH-HH----HHHHCCCCEEEEEeccCccc
Confidence 567999999977433 22333443343332 345544333333211 11 12356899999999999965
Q ss_pred c
Q 025642 180 N 180 (250)
Q Consensus 180 ~ 180 (250)
.
T Consensus 140 a 140 (600)
T 2ywe_A 140 A 140 (600)
T ss_dssp C
T ss_pred c
Confidence 3
No 458
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.69 E-value=0.00084 Score=52.02 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 025642 4 AQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g 24 (250)
-++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999975
No 459
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.65 E-value=0.001 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.+.+-
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999863
No 460
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.65 E-value=0.00098 Score=52.84 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 461
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.64 E-value=0.0011 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
.+.|.||+|+||||+++.++..+
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998765
No 462
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.63 E-value=0.003 Score=52.68 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=31.9
Q ss_pred EEEEE-cCCCCcHHHHHHHHHcCCCCC-CceEEEeecCCcc
Q 025642 4 AQLVI-GPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAA 42 (250)
Q Consensus 4 ~~~ii-GpnGSGKSTLl~~l~g~l~~~-~G~i~i~~~dp~~ 42 (250)
+++|. +..|+||||+.-.++..+... +.+|.+++.||..
T Consensus 6 vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 46 (245)
T 3ea0_A 6 VFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPF 46 (245)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTT
T ss_pred EEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCC
Confidence 44455 567899999999999988776 7799999999864
No 463
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.62 E-value=0.0044 Score=58.30 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
-.+.|.||+|+||||+.++++...
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CcEEEECcCCCCHHHHHHHHHHHh
Confidence 358899999999999999998764
No 464
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.61 E-value=0.0011 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 465
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.60 E-value=0.0012 Score=56.03 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|||||||++.+.|-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 466
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.58 E-value=0.0013 Score=52.45 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++++|++|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999985
No 467
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.58 E-value=0.024 Score=55.60 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
..++|+|..|+|||||+..+..
T Consensus 11 ~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 11 RNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
No 468
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0079 Score=53.53 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
.+.|.||+|+|||++++.++.-+.
T Consensus 47 ~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 47 LFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988764
No 469
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.55 E-value=0.0012 Score=55.30 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i 35 (250)
..+++-|++||||||.++.+...+...+-++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~ 39 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL 39 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence 567899999999999999999988765545543
No 470
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.54 E-value=0.0014 Score=53.02 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 471
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.53 E-value=0.0013 Score=53.62 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
.+.|.||+|+||||+++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999987554
No 472
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.52 E-value=0.0013 Score=52.33 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 473
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.52 E-value=0.0038 Score=51.82 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=32.8
Q ss_pred CCeEEEEE-cCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc
Q 025642 1 MGYAQLVI-GPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (250)
Q Consensus 1 ~~~~~~ii-GpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~ 42 (250)
|.-+++|. +..|+||||+.-.++..+...+.+|.+.+.||..
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM 43 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 54455555 4568999999999998887666689999999854
No 474
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.52 E-value=0.001 Score=54.09 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++|+|++|+|||||++.+.|
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999999999865
No 475
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.0014 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 476
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.51 E-value=0.0011 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999998764
No 477
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.50 E-value=0.0016 Score=52.10 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++|+|+.|+|||||++.+.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5689999999999999999986
No 478
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.50 E-value=0.00088 Score=56.32 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
++++.||+|+||||++.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999875
No 479
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.49 E-value=0.0033 Score=53.24 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=31.9
Q ss_pred CCeEEEE-EcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc
Q 025642 1 MGYAQLV-IGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (250)
Q Consensus 1 ~~~~~~i-iGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~ 42 (250)
|.-+++| -|..|+||||+.-.++..+...+.+|.++..||..
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITM 43 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 4334444 56778999999999998887666689999999853
No 480
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.48 E-value=0.0016 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999873
No 481
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.47 E-value=0.0017 Score=52.67 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999863
No 482
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.47 E-value=0.0017 Score=57.79 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 025642 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
+..++|+||+|||||||...++..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999764
No 483
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.46 E-value=0.00049 Score=65.01 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+.+|+|+|||||||++.+|..+
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999665
No 484
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.46 E-value=0.0012 Score=52.03 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~ 28 (250)
.+.|.||+|+||||+++.++..+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999886543
No 485
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.46 E-value=0.0016 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 486
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.45 E-value=0.0017 Score=52.74 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++|+|++|+|||||++.+.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5689999999999999999975
No 487
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.45 E-value=0.0016 Score=59.03 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (250)
..++|+||+||||||+.++|++.+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3578999999999999999998653
No 488
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.44 E-value=0.0015 Score=55.70 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (250)
-.||+||+||||||.++.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999998754
No 489
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.42 E-value=0.0017 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+.+-
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999998863
No 490
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.41 E-value=0.0019 Score=52.35 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++|+|++|+|||||++.+.|
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999986
No 491
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.41 E-value=0.0014 Score=51.68 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++++|++|+|||||++.+.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999999999987
No 492
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.41 E-value=0.0039 Score=52.48 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=32.4
Q ss_pred CCeEEEEE-cCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc
Q 025642 1 MGYAQLVI-GPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (250)
Q Consensus 1 ~~~~~~ii-GpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~ 42 (250)
|.-+++|. +..|+||||+.-.++..+...+.+|.+++.||..
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGL 43 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 44455554 5567999999999999887767799999999854
No 493
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.40 E-value=0.003 Score=53.72 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEe
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~ 36 (250)
.+.|.||+|+|||++++.++.......+.+...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v 63 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEE
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEE
Confidence 467999999999999999998876544444443
No 494
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.39 E-value=0.0031 Score=54.93 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=32.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEeecCCcc
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~dp~~ 42 (250)
+++|.|..|+||||+.-.++..+...+.+|.++..||..
T Consensus 43 vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 455569999999999999998887667789999999854
No 495
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.38 E-value=0.0013 Score=59.83 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|++|+|||||++.+++.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45799999999999999999985
No 496
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.37 E-value=0.0022 Score=51.70 Aligned_cols=69 Identities=10% Similarity=0.083 Sum_probs=42.4
Q ss_pred cCCeeeecCchhhhcchhhhhhccCcCHHHHHHHhhcccchhHHHHHHHHHHHHhhcCCceeEEeecCCHHHHHHHHHHh
Q 025642 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRYFLYLSSM 244 (250)
Q Consensus 165 ~~p~v~vlsK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~~~~~~~~~~ 244 (250)
+.|.+-|.||+|+.........+.+ .-.... .. +...++.+.++...|.+++..+.+.+..++..+
T Consensus 124 ~~p~ilv~nK~Dl~~~~~~~~~~~~--------~~~~~v--~~----~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 189 (201)
T 2q3h_A 124 KAPIILVGTQSDLREDVKVLIELDK--------CKEKPV--PE----EAAKLLAEEIKAASYIECSALTQKNLKEVFDAA 189 (201)
T ss_dssp SSCEEEEEECGGGGGCHHHHHHHHT--------TTCCCC--CH----HHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEEECHhhhhchhhhhhhcc--------cccccC--CH----HHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHH
Confidence 7899999999999764311111100 000000 01 122234445677799999999999999998877
Q ss_pred hhh
Q 025642 245 VWC 247 (250)
Q Consensus 245 ~~~ 247 (250)
.+.
T Consensus 190 ~~~ 192 (201)
T 2q3h_A 190 IVA 192 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 497
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.37 E-value=0.0017 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYR 24 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (250)
+-++|+|++|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 6689999999999999999864
No 498
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.37 E-value=0.0017 Score=51.99 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++|+|+.|+|||||++.+.+-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999863
No 499
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.37 E-value=0.0019 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 025642 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (250)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (250)
+-++++|++|+|||||++.+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 66899999999999999999874
No 500
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.35 E-value=0.099 Score=48.09 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCceEEEeec
Q 025642 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNL 38 (250)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~ 38 (250)
.+.|.|++|+|||||+..++..... .+..|.+...
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 5789999999999999988876543 2335555443
Done!