BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025643
(250 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19137|LAMA1_MOUSE Laminin subunit alpha-1 OS=Mus musculus GN=Lama1 PE=1 SV=1
Length = 3084
Score = 36.6 bits (83), Expect = 0.17, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 17/110 (15%)
Query: 132 SEEAMFVRAE--KNVNELNLSGELMKKESKKLLERAALAEKEMI------RGET----EL 179
+EEA + A+ K N+ +L E + K +L+R++ KE + +G T EL
Sbjct: 1921 TEEAEMLAADAHKTANKTDLISESLASRGKAVLQRSSRFLKESVGTRRKQQGITMKLDEL 1980
Query: 180 KNAGNQVQRLAKQVYKVETQAADLMEGLREIPG--REALKLRAEVASMAS 227
KN +Q Q + V + QA D + LRE PG RE + E+A+ A+
Sbjct: 1981 KNLTSQFQ---ESVDNITKQANDSLAMLRESPGGMREKGRKARELAAAAN 2027
>sp|P04786|TOP1_YEAST DNA topoisomerase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=TOP1 PE=1 SV=2
Length = 769
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 154 MKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQ 199
+K+ +K+ E+ EKE+ GE ELK++ N V+++ QV K+E +
Sbjct: 656 LKEWLEKVDEKKQEFEKELKTGEVELKSSWNSVEKIKAQVEKLEQR 701
>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3
Length = 4427
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 118 PRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGET 177
P+R +LR ++A A++ + E+ E++KK+ + LA+KE +R ++
Sbjct: 3215 PKRIRMNAALAQLREKQAALAEAQEKLREVAEKLEMLKKQYDE-----KLAQKEELRKKS 3269
Query: 178 E-----LKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQ 232
E L+ AG V LA + + E L E L + G + L A ++ M L
Sbjct: 3270 EEMELKLERAGMLVSGLAGEKARWEETVQGLEEDLGYLVG-DCLLAAAFLSYMGPFLTNY 3328
Query: 233 RAMMDKQIM--KISELGV 248
R + QI KI EL V
Sbjct: 3329 RDEIVNQIWIGKIWELQV 3346
>sp|P50532|SMC4_XENLA Structural maintenance of chromosomes protein 4 OS=Xenopus laevis
GN=smc4 PE=1 SV=1
Length = 1290
Score = 32.3 bits (72), Expect = 3.2, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 131 RSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLA 190
+SEEA+ R EK + + S E + ++ KKL E+A E E L Q + L
Sbjct: 930 KSEEAV-ARTEKEIVANDKSIEELTEDLKKLEEKATTVMNECKEAECSLPEVQEQHRSLL 988
Query: 191 KQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMM---DKQIMKIS 244
+++ ++ + L +EAL +R + + S + ++ + K+I KIS
Sbjct: 989 QEIKAIQEKEHALQ--------KEALNIRLNIEQIDSHIAEHQSKIKYWQKEITKIS 1037
>sp|Q552D9|SMC3_DICDI Structural maintenance of chromosome protein 3 OS=Dictyostelium
discoideum GN=smc3 PE=3 SV=1
Length = 1437
Score = 32.0 bits (71), Expect = 4.0, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 154 MKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR 213
++KE +K L ++ K++ R ELK ++ +L ++ K++ + ++E L E+ +
Sbjct: 243 LEKEKEKYLIHSSKESKKLERFTDELKKDESKFNKLLSEIKKIDNEKI-MVEKLNEVFDK 301
Query: 214 EALKLRAEVASMASLLKRQRAMMDK 238
+ +L + LL +++A ++K
Sbjct: 302 QKAQLVIQQKHFKKLLSKEQAKLEK 326
>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1
Length = 4456
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 118 PRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGET 177
P+R +L+ ++A A++ + E+ E++KK+ + LA+KE +R ++
Sbjct: 3244 PKRIRMNAAMAQLQEKQAALAEAQEKLREVAEKLEMLKKQYDE-----KLAQKEELRKKS 3298
Query: 178 E-----LKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQ 232
E L+ AG V LA + + E L E L + G + L A ++ M L
Sbjct: 3299 EEMELKLERAGMLVSGLAGEKARWEETVQGLEEDLGYLVG-DCLIAAAFLSYMGPFLTNY 3357
Query: 233 RAMMDKQIM--KISELGV 248
R + QI KI EL V
Sbjct: 3358 RDEIINQIWIRKIRELQV 3375
>sp|E9PVB3|CC175_MOUSE Coiled-coil domain-containing protein 175 OS=Mus musculus
GN=Ccdc175 PE=4 SV=1
Length = 822
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 177 TELKNA-GNQVQRLAKQVYKVETQAADLMEGL 207
TE KNA N++Q+L +++YK+ T+ DL E L
Sbjct: 333 TEKKNAFVNKIQKLGEKIYKLNTENEDLREKL 364
>sp|Q20060|SMC4_CAEEL Structural maintenance of chromosomes protein 4 OS=Caenorhabditis
elegans GN=smc-4 PE=1 SV=1
Length = 1549
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV 196
+ ++N++ + E MKK+ ++L+E+A E E+K+ V+R KQ+ K+
Sbjct: 947 IAKCDENISRHDKDIEKMKKKCEELMEKAIDDE--------EVKSKKETVERFEKQIKKL 998
Query: 197 ETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKISEL 246
+T+ ++ + E+ E KL E+ + +K + M +K+ ++
Sbjct: 999 QTKGEEMTKKQSELSAAET-KLEGELKKCSEGIKELKESMLADRLKVEDI 1047
>sp|Q7Z7L1|SLN11_HUMAN Schlafen family member 11 OS=Homo sapiens GN=SLFN11 PE=1 SV=2
Length = 901
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 143 NVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAD 202
NV E+ L E KK K ++R E+ M R L N+G V R+AK+V D
Sbjct: 20 NVGEVTLGEENRKKLQK--IQRDQEKERVM-RAACALLNSGGGVIRMAKKVEHPVEMGLD 76
Query: 203 LMEGLREI 210
L + LRE+
Sbjct: 77 LEQSLREL 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,341,418
Number of Sequences: 539616
Number of extensions: 2892222
Number of successful extensions: 11924
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 11739
Number of HSP's gapped (non-prelim): 317
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)