Query 025643
Match_columns 250
No_of_seqs 36 out of 38
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 07:58:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09039 hypothetical protein; 96.6 0.53 1.2E-05 44.4 19.6 76 128-203 123-199 (343)
2 PF04156 IncA: IncA protein; 96.4 0.48 1E-05 39.8 17.3 100 136-243 82-181 (191)
3 KOG1962 B-cell receptor-associ 96.1 0.37 7.9E-06 43.8 14.9 174 34-224 24-211 (216)
4 PF05957 DUF883: Bacterial pro 96.0 0.035 7.7E-07 42.6 7.3 55 60-114 29-87 (94)
5 PRK11637 AmiB activator; Provi 95.5 0.88 1.9E-05 43.2 15.7 94 139-247 44-137 (428)
6 PRK10404 hypothetical protein; 95.4 0.053 1.1E-06 43.5 6.4 52 63-114 39-94 (101)
7 COG1579 Zn-ribbon protein, pos 95.2 0.54 1.2E-05 43.2 12.9 114 135-248 38-159 (239)
8 PF06008 Laminin_I: Laminin Do 95.2 1.8 3.8E-05 38.7 15.8 128 114-241 15-156 (264)
9 PRK10132 hypothetical protein; 92.0 0.54 1.2E-05 38.3 6.2 50 64-114 47-100 (108)
10 PRK15178 Vi polysaccharide exp 91.6 4.1 8.9E-05 40.4 12.9 104 134-237 222-338 (434)
11 PF00261 Tropomyosin: Tropomyo 91.3 10 0.00022 33.7 14.0 89 135-223 106-195 (237)
12 PF10186 Atg14: UV radiation r 90.2 12 0.00026 32.6 15.0 95 151-246 65-159 (302)
13 PF11559 ADIP: Afadin- and alp 90.2 7 0.00015 32.1 11.2 59 135-193 52-110 (151)
14 PF10112 Halogen_Hydrol: 5-bro 89.6 7.6 0.00017 33.3 11.4 23 39-61 13-35 (199)
15 COG4575 ElaB Uncharacterized c 89.5 1.1 2.4E-05 36.9 5.9 39 76-114 55-97 (104)
16 PRK14161 heat shock protein Gr 89.5 7.8 0.00017 34.0 11.5 78 131-213 8-85 (178)
17 TIGR01843 type_I_hlyD type I s 88.4 17 0.00036 33.1 13.3 33 142-174 151-183 (423)
18 TIGR01843 type_I_hlyD type I s 88.3 20 0.00043 32.7 14.1 23 34-56 2-25 (423)
19 COG4942 Membrane-bound metallo 88.3 18 0.0004 36.0 14.3 78 129-214 33-110 (420)
20 PRK14160 heat shock protein Gr 88.3 11 0.00024 34.1 11.9 75 132-213 51-127 (211)
21 PF04632 FUSC: Fusaric acid re 84.1 44 0.00096 32.7 17.6 108 102-213 137-245 (650)
22 PRK14475 F0F1 ATP synthase sub 84.0 24 0.00053 29.7 19.7 53 135-187 55-108 (167)
23 PF04156 IncA: IncA protein; 84.0 24 0.00052 29.6 17.3 71 128-198 81-151 (191)
24 PF04012 PspA_IM30: PspA/IM30 83.5 26 0.00057 30.2 11.5 92 137-231 46-153 (221)
25 PF05667 DUF812: Protein of un 83.1 37 0.00079 35.0 14.0 107 134-240 400-511 (594)
26 PF10112 Halogen_Hydrol: 5-bro 83.0 23 0.0005 30.3 10.9 83 32-126 28-135 (199)
27 PRK06569 F0F1 ATP synthase sub 82.5 22 0.00048 30.8 10.6 22 219-240 109-130 (155)
28 TIGR02169 SMC_prok_A chromosom 82.4 52 0.0011 34.0 14.9 13 2-14 33-45 (1164)
29 COG1579 Zn-ribbon protein, pos 82.0 43 0.00093 31.0 12.9 72 138-210 48-136 (239)
30 TIGR03185 DNA_S_dndD DNA sulfu 81.4 65 0.0014 32.6 15.9 79 102-182 171-249 (650)
31 PF10168 Nup88: Nuclear pore c 81.3 76 0.0016 33.4 16.8 158 81-244 501-663 (717)
32 KOG0994 Extracellular matrix g 81.3 38 0.00083 38.5 13.9 80 139-218 1553-1633(1758)
33 PRK11637 AmiB activator; Provi 80.6 55 0.0012 31.3 21.0 63 135-197 75-137 (428)
34 TIGR02168 SMC_prok_B chromosom 80.5 73 0.0016 32.7 15.6 14 2-15 33-46 (1179)
35 PRK14140 heat shock protein Gr 80.1 27 0.00058 31.2 10.5 57 156-212 44-102 (191)
36 PRK02224 chromosome segregatio 79.8 63 0.0014 33.2 14.4 13 2-14 33-45 (880)
37 PRK04863 mukB cell division pr 78.9 67 0.0014 36.6 15.2 101 109-209 271-380 (1486)
38 PF10805 DUF2730: Protein of u 78.6 32 0.0007 27.5 10.1 69 95-166 4-75 (106)
39 TIGR03185 DNA_S_dndD DNA sulfu 78.2 57 0.0012 33.0 13.4 31 215-245 485-516 (650)
40 KOG0250 DNA repair protein RAD 77.9 52 0.0011 36.5 13.6 62 150-211 366-428 (1074)
41 PRK14148 heat shock protein Gr 77.7 34 0.00074 30.6 10.4 65 149-213 40-106 (195)
42 PF06818 Fez1: Fez1; InterPro 77.2 58 0.0013 29.6 11.8 94 145-238 41-156 (202)
43 PRK04654 sec-independent trans 77.1 23 0.0005 32.6 9.3 79 113-192 17-97 (214)
44 KOG0996 Structural maintenance 77.0 68 0.0015 36.2 14.3 101 140-240 463-583 (1293)
45 PF07926 TPR_MLP1_2: TPR/MLP1/ 76.8 39 0.00085 27.5 15.5 98 137-242 12-109 (132)
46 PF07888 CALCOCO1: Calcium bin 76.3 65 0.0014 33.2 13.2 63 176-238 282-357 (546)
47 PF05701 WEMBL: Weak chloropla 76.0 63 0.0014 32.3 12.8 96 143-238 310-411 (522)
48 PRK14154 heat shock protein Gr 75.6 39 0.00085 30.6 10.3 60 154-213 57-118 (208)
49 KOG0977 Nuclear envelope prote 74.4 74 0.0016 32.8 13.0 97 136-240 100-196 (546)
50 CHL00118 atpG ATP synthase CF0 74.1 50 0.0011 27.5 15.1 54 108-161 29-82 (156)
51 PF06103 DUF948: Bacterial pro 74.0 36 0.00077 25.7 11.0 63 134-196 25-87 (90)
52 smart00787 Spc7 Spc7 kinetocho 73.8 79 0.0017 29.9 12.3 167 64-233 72-266 (312)
53 KOG3868 Vacuolar H+-ATPase V0 73.5 2.5 5.4E-05 41.9 2.4 39 32-70 362-400 (411)
54 PHA02562 46 endonuclease subun 73.5 90 0.002 30.1 13.4 91 116-210 149-246 (562)
55 PRK14139 heat shock protein Gr 72.3 55 0.0012 29.1 10.3 102 139-249 29-130 (185)
56 PF11744 ALMT: Aluminium activ 72.3 75 0.0016 31.3 12.1 43 38-80 156-202 (406)
57 KOG2629 Peroxisomal membrane a 71.3 85 0.0018 30.3 11.9 88 113-203 99-187 (300)
58 KOG0964 Structural maintenance 71.0 62 0.0013 36.0 12.1 137 112-248 365-509 (1200)
59 PF05700 BCAS2: Breast carcino 70.7 69 0.0015 28.4 10.6 65 132-206 140-204 (221)
60 PF10186 Atg14: UV radiation r 70.6 72 0.0016 27.8 12.5 79 129-207 57-135 (302)
61 PRK06568 F0F1 ATP synthase sub 69.9 72 0.0016 27.5 14.8 47 118-164 21-67 (154)
62 PF04531 Phage_holin_1: Bacter 69.5 9.8 0.00021 29.5 4.5 22 33-54 9-30 (84)
63 PF10805 DUF2730: Protein of u 69.2 30 0.00065 27.6 7.3 55 182-236 33-88 (106)
64 PF10146 zf-C4H2: Zinc finger- 69.2 72 0.0016 29.1 10.6 50 122-171 12-61 (230)
65 TIGR03794 NHPM_micro_HlyD NHPM 69.1 96 0.0021 29.3 11.8 36 202-237 216-251 (421)
66 PF01025 GrpE: GrpE; InterPro 69.1 8.4 0.00018 31.7 4.3 95 146-248 15-110 (165)
67 PF00038 Filament: Intermediat 69.0 66 0.0014 28.9 10.3 98 122-222 51-151 (312)
68 PRK14158 heat shock protein Gr 68.8 87 0.0019 28.0 10.8 95 151-248 42-138 (194)
69 TIGR00606 rad50 rad50. This fa 68.8 66 0.0014 35.4 12.0 24 214-237 985-1008(1311)
70 TIGR01010 BexC_CtrB_KpsE polys 68.7 99 0.0022 28.6 14.4 86 147-234 168-263 (362)
71 PRK14162 heat shock protein Gr 68.4 89 0.0019 28.0 11.1 64 143-213 40-105 (194)
72 PRK14163 heat shock protein Gr 68.4 76 0.0016 29.0 10.5 92 144-249 42-133 (214)
73 PRK10476 multidrug resistance 67.7 71 0.0015 29.3 10.4 51 139-189 118-171 (346)
74 PRK14143 heat shock protein Gr 67.4 92 0.002 28.7 11.0 64 143-213 68-133 (238)
75 PRK14145 heat shock protein Gr 67.3 92 0.002 28.0 10.7 95 150-249 46-142 (196)
76 PRK13454 F0F1 ATP synthase sub 66.9 83 0.0018 27.1 17.3 29 137-165 78-106 (181)
77 PRK08475 F0F1 ATP synthase sub 66.7 80 0.0017 26.8 13.9 71 89-159 7-80 (167)
78 PRK09039 hypothetical protein; 66.7 1.2E+02 0.0026 28.8 20.7 45 35-79 17-63 (343)
79 TIGR02680 conserved hypothetic 66.4 2.3E+02 0.0049 31.9 15.8 120 117-238 205-351 (1353)
80 PF12777 MT: Microtubule-bindi 66.2 21 0.00047 33.3 6.8 80 99-178 185-264 (344)
81 PRK02224 chromosome segregatio 66.0 1.7E+02 0.0036 30.3 15.0 28 183-210 278-305 (880)
82 PRK09841 cryptic autophosphory 65.4 1.3E+02 0.0028 31.1 12.7 44 196-244 351-394 (726)
83 PRK14151 heat shock protein Gr 65.3 85 0.0018 27.5 9.9 96 144-249 22-121 (176)
84 PRK14156 heat shock protein Gr 64.9 77 0.0017 28.0 9.6 89 156-249 34-124 (177)
85 PRK14471 F0F1 ATP synthase sub 64.8 81 0.0018 26.2 15.2 54 108-161 15-68 (164)
86 PF12777 MT: Microtubule-bindi 64.6 39 0.00084 31.7 8.2 96 117-212 217-312 (344)
87 TIGR03007 pepcterm_ChnLen poly 64.4 1.4E+02 0.003 28.7 12.2 41 154-194 252-292 (498)
88 TIGR02680 conserved hypothetic 64.3 2.5E+02 0.0054 31.6 19.1 94 117-213 848-943 (1353)
89 PF15183 MRAP: Melanocortin-2 64.2 7.1 0.00015 31.6 2.8 28 32-59 37-64 (90)
90 PRK03918 chromosome segregatio 64.1 1.8E+02 0.0038 29.9 15.1 13 2-14 33-45 (880)
91 PRK14155 heat shock protein Gr 63.5 85 0.0018 28.4 9.8 97 143-249 14-116 (208)
92 TIGR01069 mutS2 MutS2 family p 62.8 2.1E+02 0.0046 30.3 14.1 14 2-15 332-345 (771)
93 PRK12704 phosphodiesterase; Pr 62.7 1.8E+02 0.0039 29.4 16.6 28 218-245 122-149 (520)
94 PRK01156 chromosome segregatio 62.7 2E+02 0.0043 30.0 15.0 79 127-205 628-709 (895)
95 PRK10698 phage shock protein P 62.5 1.1E+02 0.0025 27.3 10.4 91 137-230 47-153 (222)
96 PF12329 TMF_DNA_bd: TATA elem 62.5 66 0.0014 24.4 9.2 70 140-209 3-72 (74)
97 KOG0976 Rho/Rac1-interacting s 62.2 2.6E+02 0.0057 31.2 14.9 168 56-245 35-208 (1265)
98 COG1196 Smc Chromosome segrega 61.7 2.2E+02 0.0048 31.1 14.1 45 128-172 674-718 (1163)
99 PF05278 PEARLI-4: Arabidopsis 61.6 1.5E+02 0.0032 28.2 12.8 91 140-243 164-254 (269)
100 PRK11519 tyrosine kinase; Prov 61.5 2E+02 0.0044 29.7 13.9 49 192-245 347-395 (719)
101 TIGR03545 conserved hypothetic 61.2 2E+02 0.0043 29.5 13.2 77 113-193 146-228 (555)
102 PF05529 Bap31: B-cell recepto 60.9 1.1E+02 0.0023 26.2 11.6 40 133-172 152-191 (192)
103 PF06009 Laminin_II: Laminin D 60.6 2.8 6.1E-05 34.5 0.0 101 137-237 5-107 (138)
104 KOG0250 DNA repair protein RAD 60.6 2.5E+02 0.0053 31.6 14.2 21 1-21 153-173 (1074)
105 PRK14153 heat shock protein Gr 60.6 1.3E+02 0.0027 27.1 10.3 62 152-213 36-99 (194)
106 PRK14474 F0F1 ATP synthase sub 59.3 1.4E+02 0.003 27.1 19.7 23 38-60 5-27 (250)
107 PRK14150 heat shock protein Gr 59.3 1.3E+02 0.0028 26.7 10.3 45 169-213 58-104 (193)
108 PF12718 Tropomyosin_1: Tropom 58.9 1.1E+02 0.0024 25.7 9.9 26 142-167 35-60 (143)
109 PF03904 DUF334: Domain of unk 58.7 1.6E+02 0.0034 27.5 12.5 94 132-231 33-138 (230)
110 PF14235 DUF4337: Domain of un 58.5 31 0.00066 29.7 5.9 58 137-194 68-130 (157)
111 TIGR00998 8a0101 efflux pump m 58.4 1.4E+02 0.003 26.7 13.1 19 156-174 115-133 (334)
112 KOG0243 Kinesin-like protein [ 58.3 2.1E+02 0.0046 31.9 13.2 99 132-230 438-549 (1041)
113 PRK14146 heat shock protein Gr 57.7 1.2E+02 0.0027 27.4 9.9 62 152-213 57-120 (215)
114 PRK10245 adrA diguanylate cycl 57.4 36 0.00079 31.8 6.7 44 21-70 47-90 (366)
115 PF12732 YtxH: YtxH-like prote 57.2 76 0.0016 23.4 7.2 59 37-95 1-59 (74)
116 KOG3564 GTPase-activating prot 56.8 93 0.002 32.4 9.8 81 126-208 21-108 (604)
117 PRK14473 F0F1 ATP synthase sub 56.8 1.1E+02 0.0025 25.3 15.4 53 109-161 16-68 (164)
118 TIGR00606 rad50 rad50. This fa 56.7 3.2E+02 0.0068 30.4 15.1 15 178-192 1029-1043(1311)
119 smart00502 BBC B-Box C-termina 56.1 84 0.0018 23.5 11.2 86 136-234 8-93 (127)
120 TIGR02977 phageshock_pspA phag 56.0 1.4E+02 0.0031 26.2 11.9 72 137-211 47-126 (219)
121 PRK10698 phage shock protein P 55.8 1.5E+02 0.0033 26.5 12.2 102 135-243 17-118 (222)
122 PF12128 DUF3584: Protein of u 55.0 2.4E+02 0.0051 31.1 13.1 69 142-210 816-884 (1201)
123 PRK07352 F0F1 ATP synthase sub 54.7 1.3E+02 0.0028 25.3 16.1 40 112-151 30-69 (174)
124 TIGR01005 eps_transp_fam exopo 54.7 2.5E+02 0.0055 28.7 13.4 44 196-244 357-400 (754)
125 KOG3599 Ca2+-modulated nonsele 54.7 2E+02 0.0043 30.9 12.2 61 5-70 621-682 (798)
126 PF11559 ADIP: Afadin- and alp 54.6 1.2E+02 0.0026 24.9 10.6 48 143-190 74-121 (151)
127 PF06024 DUF912: Nucleopolyhed 53.8 11 0.00023 30.0 2.2 21 35-55 62-82 (101)
128 PF05557 MAD: Mitotic checkpoi 53.7 2.7E+02 0.0059 28.7 13.4 99 139-237 500-630 (722)
129 TIGR03319 YmdA_YtgF conserved 53.5 2.5E+02 0.0055 28.3 15.5 29 217-245 115-143 (514)
130 PRK08476 F0F1 ATP synthase sub 53.3 1.3E+02 0.0028 24.9 16.6 55 109-163 15-69 (141)
131 PF05827 ATP-synt_S1: Vacuolar 53.1 14 0.00031 33.1 3.2 20 34-53 256-275 (282)
132 PRK09841 cryptic autophosphory 52.9 1.8E+02 0.004 30.0 11.4 65 139-203 257-323 (726)
133 TIGR03513 GldL_gliding gliding 52.4 1.9E+02 0.0041 26.5 12.7 57 173-234 133-193 (202)
134 PF14817 HAUS5: HAUS augmin-li 52.2 1.1E+02 0.0023 32.1 9.5 46 139-184 83-128 (632)
135 COG3883 Uncharacterized protei 52.1 1.9E+02 0.004 27.4 10.3 73 117-189 19-92 (265)
136 PF04100 Vps53_N: Vps53-like, 51.7 94 0.002 30.0 8.6 71 128-202 12-82 (383)
137 PF13815 Dzip-like_N: Iguana/D 51.5 1.2E+02 0.0027 24.3 8.1 54 136-189 60-113 (118)
138 KOG0977 Nuclear envelope prote 51.4 3E+02 0.0066 28.6 13.6 75 150-224 156-230 (546)
139 PRK14147 heat shock protein Gr 51.3 1.7E+02 0.0036 25.6 10.2 60 147-213 23-84 (172)
140 PRK05431 seryl-tRNA synthetase 50.7 1.2E+02 0.0026 29.5 9.2 79 136-214 29-110 (425)
141 PRK00409 recombination and DNA 50.7 3.3E+02 0.0072 28.9 13.7 17 195-211 581-597 (782)
142 PRK00888 ftsB cell division pr 50.7 73 0.0016 25.6 6.6 29 135-163 34-62 (105)
143 PF09969 DUF2203: Uncharacteri 50.5 83 0.0018 26.0 7.0 30 221-250 44-73 (120)
144 PRK07353 F0F1 ATP synthase sub 50.5 1.3E+02 0.0028 24.1 15.2 56 104-159 8-63 (140)
145 TIGR03321 alt_F1F0_F0_B altern 50.5 1.9E+02 0.004 25.9 15.6 53 108-160 12-64 (246)
146 PF05478 Prominin: Prominin; 49.9 3.4E+02 0.0073 28.7 21.4 39 143-181 247-285 (806)
147 PF15456 Uds1: Up-regulated Du 49.6 60 0.0013 27.1 6.1 41 149-190 22-62 (124)
148 PRK14149 heat shock protein Gr 49.4 1.5E+02 0.0033 26.6 8.9 90 158-249 45-136 (191)
149 PF10046 BLOC1_2: Biogenesis o 49.3 1.3E+02 0.0028 23.7 10.3 70 134-207 27-96 (99)
150 PF07851 TMPIT: TMPIT-like pro 49.3 2.2E+02 0.0047 27.7 10.6 84 148-238 3-86 (330)
151 TIGR01000 bacteriocin_acc bact 49.2 2.5E+02 0.0055 27.1 11.9 32 139-170 169-200 (457)
152 TIGR01069 mutS2 MutS2 family p 48.8 2.8E+02 0.0061 29.4 12.1 14 196-209 577-590 (771)
153 KOG0996 Structural maintenance 48.7 3.7E+02 0.0079 30.8 13.2 84 163-247 528-613 (1293)
154 TIGR01000 bacteriocin_acc bact 48.0 2.6E+02 0.0057 26.9 13.0 26 31-56 13-38 (457)
155 KOG1937 Uncharacterized conser 47.6 3.4E+02 0.0074 28.1 13.9 106 138-244 303-430 (521)
156 PF09730 BicD: Microtubule-ass 47.4 2.6E+02 0.0055 30.0 11.5 74 134-210 358-431 (717)
157 TIGR03319 YmdA_YtgF conserved 47.3 2.8E+02 0.0061 28.0 11.4 24 155-178 75-98 (514)
158 TIGR01010 BexC_CtrB_KpsE polys 46.8 1.5E+02 0.0033 27.4 9.0 26 219-244 277-302 (362)
159 PRK11519 tyrosine kinase; Prov 46.7 2.9E+02 0.0064 28.5 11.7 65 139-203 257-323 (719)
160 PF14635 HHH_7: Helix-hairpin- 46.7 8.3 0.00018 31.5 0.6 56 61-121 5-63 (104)
161 PRK14144 heat shock protein Gr 46.7 2.2E+02 0.0048 25.7 10.1 62 145-213 48-111 (199)
162 PF06005 DUF904: Protein of un 46.7 1.3E+02 0.0028 23.0 9.8 49 135-187 4-52 (72)
163 PRK03918 chromosome segregatio 46.7 3.4E+02 0.0075 27.9 14.5 65 141-205 625-694 (880)
164 PRK06231 F0F1 ATP synthase sub 46.2 2.1E+02 0.0046 25.2 19.2 48 113-160 60-107 (205)
165 smart00787 Spc7 Spc7 kinetocho 46.1 2.7E+02 0.0058 26.4 11.8 23 203-225 261-283 (312)
166 PF07888 CALCOCO1: Calcium bin 45.5 3.7E+02 0.0081 27.9 14.0 44 134-177 142-185 (546)
167 TIGR02449 conserved hypothetic 45.1 1.4E+02 0.003 22.8 8.7 62 137-198 2-63 (65)
168 COG3455 Type VI protein secret 45.0 62 0.0013 30.4 6.1 69 1-69 173-254 (262)
169 PRK09793 methyl-accepting prot 44.8 3.1E+02 0.0067 26.8 21.6 68 130-197 291-358 (533)
170 PF08898 DUF1843: Domain of un 44.7 33 0.00073 25.4 3.4 31 134-164 20-53 (53)
171 KOG1003 Actin filament-coating 44.7 2.6E+02 0.0056 25.8 10.0 74 136-209 75-155 (205)
172 PF10168 Nup88: Nuclear pore c 44.5 2.2E+02 0.0049 30.0 10.6 28 209-236 681-708 (717)
173 PRK00708 sec-independent trans 44.1 2.6E+02 0.0056 25.7 10.0 20 111-130 15-35 (209)
174 PF11932 DUF3450: Protein of u 44.1 2.3E+02 0.0051 25.2 10.4 7 209-215 121-127 (251)
175 KOG0964 Structural maintenance 43.7 5.4E+02 0.012 29.3 14.2 154 76-230 608-802 (1200)
176 cd07590 BAR_Bin3 The Bin/Amphi 43.7 2.5E+02 0.0055 25.5 11.1 36 131-166 7-42 (225)
177 PF11382 DUF3186: Protein of u 43.7 87 0.0019 29.2 6.9 55 102-169 12-66 (308)
178 PF09769 ApoO: Apolipoprotein 43.5 53 0.0011 27.4 4.9 66 59-128 53-127 (158)
179 PF02646 RmuC: RmuC family; I 43.5 1.8E+02 0.0038 27.0 8.8 54 155-208 12-65 (304)
180 KOG1003 Actin filament-coating 43.3 1.4E+02 0.003 27.5 7.9 32 140-171 2-33 (205)
181 PF02403 Seryl_tRNA_N: Seryl-t 43.3 1.5E+02 0.0033 22.8 8.4 67 137-204 31-101 (108)
182 PRK09174 F0F1 ATP synthase sub 43.0 2.4E+02 0.0052 25.0 19.5 28 137-164 100-127 (204)
183 PF12761 End3: Actin cytoskele 42.9 1.1E+02 0.0023 27.8 7.0 38 154-191 101-142 (195)
184 PHA02699 hypothetical protein; 42.6 3.8E+02 0.0083 27.2 11.9 40 209-249 416-456 (466)
185 PRK11546 zraP zinc resistance 42.2 2.3E+02 0.0049 24.5 8.7 32 215-249 91-122 (143)
186 PRK03598 putative efflux pump 42.2 2.7E+02 0.0058 25.3 14.1 20 38-57 6-27 (331)
187 PRK15422 septal ring assembly 42.0 1.8E+02 0.0039 23.2 7.8 56 135-190 4-62 (79)
188 PF09969 DUF2203: Uncharacteri 41.9 67 0.0014 26.5 5.2 60 154-213 25-86 (120)
189 PRK12704 phosphodiesterase; Pr 41.9 3.9E+02 0.0084 27.1 18.8 20 155-174 81-100 (520)
190 PF08717 nsp8: nsp8 replicase; 41.9 82 0.0018 28.8 6.1 59 136-199 14-76 (199)
191 PRK14159 heat shock protein Gr 41.8 2.5E+02 0.0053 24.8 9.2 88 159-249 33-123 (176)
192 TIGR00833 actII Transport prot 41.8 4.6E+02 0.01 28.0 12.5 98 133-238 510-653 (910)
193 PRK11578 macrolide transporter 41.5 1.8E+02 0.0038 26.9 8.5 25 150-174 107-131 (370)
194 PRK14141 heat shock protein Gr 41.5 2.7E+02 0.0059 25.2 10.0 56 158-213 40-97 (209)
195 PF01484 Col_cuticle_N: Nemato 41.1 1.1E+02 0.0024 20.6 5.7 22 62-83 26-47 (53)
196 PF08285 DPM3: Dolichol-phosph 41.1 18 0.00038 28.8 1.7 25 136-160 62-86 (91)
197 PF12297 EVC2_like: Ellis van 40.9 4E+02 0.0088 27.0 11.4 178 35-221 68-281 (429)
198 PF09730 BicD: Microtubule-ass 40.4 4.1E+02 0.0089 28.5 11.7 81 130-217 15-95 (717)
199 PRK10929 putative mechanosensi 40.4 3.7E+02 0.0081 30.1 11.8 40 123-166 50-89 (1109)
200 PF09991 DUF2232: Predicted me 40.3 2.5E+02 0.0053 24.3 9.3 72 52-123 107-185 (290)
201 KOG0163 Myosin class VI heavy 40.2 5.8E+02 0.013 28.6 12.8 100 136-238 897-1005(1259)
202 PF04048 Sec8_exocyst: Sec8 ex 40.1 2.1E+02 0.0045 23.7 7.9 10 204-213 129-138 (142)
203 PF01706 FliG_C: FliG C-termin 40.1 87 0.0019 24.6 5.4 44 205-248 59-106 (110)
204 PF08317 Spc7: Spc7 kinetochor 40.1 3.2E+02 0.0068 25.5 13.6 43 41-88 59-101 (325)
205 PF10146 zf-C4H2: Zinc finger- 40.1 3E+02 0.0064 25.2 12.0 79 126-204 23-101 (230)
206 PF10174 Cast: RIM-binding pro 39.9 3.2E+02 0.007 29.4 11.0 106 137-245 55-163 (775)
207 TIGR02231 conserved hypothetic 39.8 2.4E+02 0.0051 27.8 9.5 91 143-244 72-172 (525)
208 KOG0612 Rho-associated, coiled 39.7 3.7E+02 0.008 30.9 11.6 70 139-208 462-532 (1317)
209 TIGR01005 eps_transp_fam exopo 39.4 4.4E+02 0.0095 27.0 16.3 79 98-180 164-261 (754)
210 PRK10884 SH3 domain-containing 39.4 2.6E+02 0.0057 25.1 8.9 20 135-154 93-112 (206)
211 PRK09860 putative alcohol dehy 39.3 3.4E+02 0.0074 25.7 10.9 90 8-125 189-295 (383)
212 smart00435 TOPEUc DNA Topoisom 39.3 1.8E+02 0.0038 29.1 8.4 84 125-209 267-367 (391)
213 PF12325 TMF_TATA_bd: TATA ele 39.3 2.2E+02 0.0049 23.6 13.6 53 180-233 64-116 (120)
214 PF12273 RCR: Chitin synthesis 39.0 32 0.0007 27.8 2.9 19 37-55 4-22 (130)
215 PF00038 Filament: Intermediat 38.8 2.9E+02 0.0063 24.8 14.0 83 155-237 194-279 (312)
216 PF12072 DUF3552: Domain of un 38.8 2.7E+02 0.0058 24.3 17.4 78 102-186 8-87 (201)
217 PHA02562 46 endonuclease subun 38.7 3.7E+02 0.008 26.0 12.9 19 31-49 145-163 (562)
218 PRK11677 hypothetical protein; 38.7 1E+02 0.0023 26.1 6.0 34 134-167 35-68 (134)
219 PF02388 FemAB: FemAB family; 38.7 1.5E+02 0.0031 28.6 7.7 54 141-198 241-294 (406)
220 PF07246 Phlebovirus_NSM: Phle 38.5 1.1E+02 0.0025 28.9 6.7 55 124-182 188-242 (264)
221 KOG3614 Ca2+/Mg2+-permeable ca 38.4 6.9E+02 0.015 29.0 15.7 167 31-211 1006-1189(1381)
222 PF05278 PEARLI-4: Arabidopsis 38.4 3.6E+02 0.0077 25.7 10.0 51 140-190 191-241 (269)
223 PF11696 DUF3292: Protein of u 38.0 39 0.00084 35.5 3.9 79 5-89 291-385 (642)
224 PRK13460 F0F1 ATP synthase sub 37.9 2.5E+02 0.0054 23.7 15.0 56 106-161 21-76 (173)
225 PRK10884 SH3 domain-containing 37.8 3E+02 0.0065 24.7 10.5 29 145-173 89-117 (206)
226 COG4026 Uncharacterized protei 37.6 3.1E+02 0.0067 26.2 9.3 72 139-210 132-203 (290)
227 PRK13824 replication initiatio 37.5 4.1E+02 0.0089 26.1 10.9 16 176-191 169-184 (404)
228 PRK13455 F0F1 ATP synthase sub 37.3 2.6E+02 0.0056 23.8 18.5 31 134-164 71-101 (184)
229 TIGR00414 serS seryl-tRNA synt 37.2 4E+02 0.0087 26.0 11.4 77 137-213 32-112 (418)
230 cd00890 Prefoldin Prefoldin is 37.1 1.5E+02 0.0033 22.9 6.4 40 134-173 86-125 (129)
231 COG5185 HEC1 Protein involved 37.0 5.2E+02 0.011 27.2 14.6 79 131-213 253-331 (622)
232 PF05266 DUF724: Protein of un 37.0 3E+02 0.0065 24.4 10.7 76 158-234 105-180 (190)
233 COG3883 Uncharacterized protei 36.7 3.8E+02 0.0081 25.5 10.7 82 165-247 33-114 (265)
234 CHL00019 atpF ATP synthase CF0 36.5 2.7E+02 0.0058 23.7 19.3 93 138-243 72-176 (184)
235 PF04698 Rab_eff_C: Rab effect 36.5 82 0.0018 33.6 6.0 73 178-250 541-627 (714)
236 PF04728 LPP: Lipoprotein leuc 35.9 1.9E+02 0.004 21.6 6.9 43 137-179 5-47 (56)
237 PF00769 ERM: Ezrin/radixin/mo 35.9 3.4E+02 0.0074 24.7 11.1 97 139-236 30-126 (246)
238 KOG0994 Extracellular matrix g 35.8 7.8E+02 0.017 28.9 20.6 116 51-170 1530-1647(1758)
239 KOG1852 Cell cycle-associated 35.8 22 0.00047 32.3 1.5 13 50-62 162-174 (223)
240 PRK12472 hypothetical protein; 35.8 2.6E+02 0.0057 28.9 9.2 72 138-209 200-280 (508)
241 PF13038 DUF3899: Domain of un 35.8 1.7E+02 0.0037 22.1 6.3 66 41-106 7-80 (92)
242 PRK14157 heat shock protein Gr 35.5 3.2E+02 0.007 25.3 9.0 57 157-213 85-143 (227)
243 KOG0612 Rho-associated, coiled 35.5 7.5E+02 0.016 28.6 13.3 21 190-210 573-593 (1317)
244 PF06717 DUF1202: Protein of u 35.4 73 0.0016 30.8 5.0 45 134-178 137-181 (308)
245 PRK14475 F0F1 ATP synthase sub 35.4 2.7E+02 0.0059 23.4 14.2 43 119-161 28-70 (167)
246 PF12732 YtxH: YtxH-like prote 35.3 1.8E+02 0.0039 21.4 8.8 18 103-120 8-25 (74)
247 PF04186 FxsA: FxsA cytoplasmi 35.2 2.5E+02 0.0054 22.9 8.7 21 110-130 91-111 (119)
248 PRK15396 murein lipoprotein; P 35.1 2.1E+02 0.0045 22.4 6.7 42 137-178 27-68 (78)
249 PF11180 DUF2968: Protein of u 34.6 3.6E+02 0.0078 24.6 9.7 65 136-200 120-184 (192)
250 PF08573 SAE2: DNA repair prot 34.5 18 0.00039 28.3 0.8 11 28-38 77-87 (93)
251 PF04420 CHD5: CHD5-like prote 34.5 2E+02 0.0043 24.4 7.1 56 138-193 36-103 (161)
252 COG3206 GumC Uncharacterized p 34.2 4.3E+02 0.0094 25.4 10.4 100 139-243 281-396 (458)
253 PF14715 FixP_N: N-terminal do 34.1 57 0.0012 23.5 3.2 30 29-58 15-44 (51)
254 PF13600 DUF4140: N-terminal d 34.1 95 0.0021 23.8 4.7 32 141-172 69-100 (104)
255 PRK00888 ftsB cell division pr 34.0 1.4E+02 0.0031 23.9 5.8 20 137-156 43-62 (105)
256 KOG3501 Molecular chaperone Pr 34.0 2.4E+02 0.0052 23.9 7.2 42 131-172 63-104 (114)
257 PF04977 DivIC: Septum formati 33.8 1E+02 0.0022 21.9 4.6 27 135-161 24-50 (80)
258 TIGR00984 3a0801s03tim44 mitoc 33.5 1.9E+02 0.0041 28.6 7.6 23 141-163 7-29 (378)
259 TIGR03321 alt_F1F0_F0_B altern 33.4 3.5E+02 0.0076 24.1 19.9 112 136-248 76-207 (246)
260 PF12718 Tropomyosin_1: Tropom 33.4 2.9E+02 0.0063 23.2 12.9 57 136-192 15-71 (143)
261 COG4238 Murein lipoprotein [Ce 33.4 2.5E+02 0.0054 22.4 7.5 46 134-179 24-69 (78)
262 PF01528 Herpes_glycop: Herpes 33.3 1.6E+02 0.0035 29.0 7.1 102 38-150 242-355 (374)
263 KOG2307 Low density lipoprotei 33.3 4E+02 0.0086 28.5 10.1 81 130-214 77-160 (705)
264 PRK05759 F0F1 ATP synthase sub 33.2 2.6E+02 0.0057 22.6 15.0 52 107-158 10-61 (156)
265 PRK13454 F0F1 ATP synthase sub 32.6 3.2E+02 0.007 23.5 13.2 50 111-160 41-90 (181)
266 PF13997 YqjK: YqjK-like prote 32.5 49 0.0011 25.1 2.8 31 89-122 29-59 (73)
267 PF15136 UPF0449: Uncharacteri 32.5 83 0.0018 25.8 4.3 31 162-192 66-96 (97)
268 PF14276 DUF4363: Domain of un 32.4 1.3E+02 0.0028 23.8 5.3 33 42-74 3-35 (121)
269 KOG4603 TBP-1 interacting prot 32.1 4E+02 0.0087 24.4 13.0 96 138-245 89-184 (201)
270 PF01920 Prefoldin_2: Prefoldi 32.0 2.2E+02 0.0047 21.3 6.3 41 132-172 59-99 (106)
271 PF05701 WEMBL: Weak chloropla 31.8 5.4E+02 0.012 25.8 12.9 74 134-207 280-353 (522)
272 cd07651 F-BAR_PombeCdc15_like 31.7 3.6E+02 0.0077 23.7 19.3 74 156-232 150-223 (236)
273 TIGR00782 ccoP cytochrome c ox 31.5 1E+02 0.0022 28.1 5.1 32 28-59 20-51 (285)
274 COG4942 Membrane-bound metallo 31.4 3E+02 0.0065 27.7 8.7 72 128-199 38-109 (420)
275 PF05384 DegS: Sensor protein 31.3 3.6E+02 0.0077 23.5 14.0 97 132-243 14-117 (159)
276 PF10498 IFT57: Intra-flagella 31.2 1.8E+02 0.0038 28.3 6.9 52 138-189 255-306 (359)
277 KOG0999 Microtubule-associated 30.9 2.2E+02 0.0047 30.4 7.9 79 131-216 89-167 (772)
278 KOG1962 B-cell receptor-associ 30.8 1.4E+02 0.003 27.6 5.8 42 147-188 149-190 (216)
279 PF11286 DUF3087: Protein of u 30.7 1.3E+02 0.0028 26.7 5.4 58 33-99 43-106 (165)
280 COG4046 Uncharacterized protei 30.7 82 0.0018 31.1 4.6 58 34-91 8-65 (368)
281 PF06810 Phage_GP20: Phage min 30.3 2.3E+02 0.0051 24.1 6.9 45 134-178 33-80 (155)
282 PF12709 Kinetocho_Slk19: Cent 30.2 1.7E+02 0.0036 23.6 5.6 35 139-173 46-80 (87)
283 PF01920 Prefoldin_2: Prefoldi 30.2 1.6E+02 0.0034 22.0 5.3 43 138-180 58-100 (106)
284 PRK04863 mukB cell division pr 30.1 9.2E+02 0.02 28.0 16.2 29 209-237 434-462 (1486)
285 PF13805 Pil1: Eisosome compon 30.1 3.2E+02 0.0069 26.0 8.2 62 122-190 125-192 (271)
286 PF14712 Snapin_Pallidin: Snap 30.1 2.4E+02 0.0052 21.1 9.8 68 136-203 15-90 (92)
287 PF07578 LAB_N: Lipid A Biosyn 29.8 40 0.00087 26.2 1.9 29 29-59 24-53 (72)
288 TIGR00999 8a0102 Membrane Fusi 29.7 3.4E+02 0.0073 23.2 7.8 52 139-190 20-74 (265)
289 KOG3364 Membrane protein invol 29.7 1.1E+02 0.0023 27.0 4.7 45 50-94 74-124 (149)
290 KOG0161 Myosin class II heavy 29.6 1.1E+03 0.023 28.5 14.4 88 124-211 911-998 (1930)
291 PF09006 Surfac_D-trimer: Lung 29.6 1E+02 0.0022 22.3 3.9 24 144-167 1-24 (46)
292 PRK13453 F0F1 ATP synthase sub 29.5 3.5E+02 0.0076 22.9 16.2 59 101-159 18-76 (173)
293 PF12017 Tnp_P_element: Transp 29.1 2.5E+02 0.0053 25.8 7.2 57 131-189 6-63 (236)
294 PRK10325 heat shock protein Gr 29.1 4.1E+02 0.009 23.6 9.5 78 169-249 59-140 (197)
295 PF06476 DUF1090: Protein of u 29.1 1.9E+02 0.0042 23.8 5.9 58 128-187 56-113 (115)
296 PF05546 She9_MDM33: She9 / Md 28.8 2.4E+02 0.0053 25.9 7.0 85 157-241 33-134 (207)
297 cd00584 Prefoldin_alpha Prefol 28.7 2.3E+02 0.005 22.4 6.2 111 53-173 4-125 (129)
298 PF05440 MtrB: Tetrahydrometha 28.1 41 0.00089 27.5 1.9 11 37-47 79-89 (97)
299 PRK09578 periplasmic multidrug 27.8 3.5E+02 0.0077 25.2 8.2 50 138-187 104-156 (385)
300 COG2433 Uncharacterized conser 27.8 5.4E+02 0.012 27.5 10.1 60 135-198 429-488 (652)
301 PF09726 Macoilin: Transmembra 27.7 7.6E+02 0.016 26.2 12.3 20 218-237 543-562 (697)
302 PRK09465 tolC outer membrane c 27.6 4.9E+02 0.011 24.0 10.8 26 153-178 360-385 (446)
303 COG0598 CorA Mg2+ and Co2+ tra 27.6 4.9E+02 0.011 24.0 10.9 107 135-243 154-264 (322)
304 PF06295 DUF1043: Protein of u 27.6 2E+02 0.0044 23.6 5.9 46 38-85 3-48 (128)
305 PRK11644 sensory histidine kin 27.6 5.9E+02 0.013 24.9 18.2 28 143-170 272-299 (495)
306 PLN03223 Polycystin cation cha 27.5 1.3E+02 0.0029 34.8 6.0 56 150-205 1572-1630(1634)
307 COG1538 TolC Outer membrane pr 27.4 4.3E+02 0.0094 25.1 8.8 61 147-207 166-229 (457)
308 PRK11427 multidrug efflux syst 27.4 4.8E+02 0.01 27.8 9.7 119 102-231 165-289 (683)
309 TIGR01144 ATP_synt_b ATP synth 27.4 3.3E+02 0.0072 21.9 13.7 44 118-161 12-55 (147)
310 KOG0161 Myosin class II heavy 27.3 1.2E+03 0.025 28.2 14.5 82 141-223 858-946 (1930)
311 PF02185 HR1: Hr1 repeat; Int 27.3 2E+02 0.0043 20.9 5.2 30 136-165 34-63 (70)
312 COG1566 EmrA Multidrug resista 27.2 5.9E+02 0.013 24.8 10.5 41 134-174 97-138 (352)
313 TIGR03017 EpsF chain length de 27.0 5.4E+02 0.012 24.2 11.6 107 137-248 263-370 (444)
314 PF06363 Picorna_P3A: Picornav 27.0 63 0.0014 26.7 2.7 20 37-56 70-93 (100)
315 PRK12705 hypothetical protein; 26.9 7E+02 0.015 25.6 23.1 13 217-229 154-166 (508)
316 PF04791 LMBR1: LMBR1-like mem 26.9 5.6E+02 0.012 24.4 14.3 84 100-191 169-252 (471)
317 TIGR00634 recN DNA repair prot 26.9 6E+02 0.013 25.4 10.0 29 214-242 354-382 (563)
318 PF11460 DUF3007: Protein of u 26.8 1.3E+02 0.0029 24.9 4.6 51 26-85 25-75 (104)
319 PF11853 DUF3373: Protein of u 26.8 56 0.0012 33.3 2.9 16 150-165 32-47 (489)
320 PLN02678 seryl-tRNA synthetase 26.6 6.6E+02 0.014 25.2 10.3 30 137-166 35-64 (448)
321 PRK08990 flagellar motor prote 26.6 2E+02 0.0043 26.5 6.1 57 35-104 177-235 (254)
322 PRK00106 hypothetical protein; 26.6 7.3E+02 0.016 25.6 14.3 13 136-148 47-59 (535)
323 PF02996 Prefoldin: Prefoldin 26.6 2.2E+02 0.0047 22.0 5.6 40 134-173 76-115 (120)
324 PF13994 PgaD: PgaD-like prote 26.5 2.9E+02 0.0062 22.8 6.6 75 79-162 47-121 (138)
325 PF07106 TBPIP: Tat binding pr 26.4 3.9E+02 0.0083 22.3 11.3 90 145-234 75-166 (169)
326 TIGR03007 pepcterm_ChnLen poly 26.3 5.9E+02 0.013 24.5 14.1 10 100-109 133-142 (498)
327 PF07225 NDUF_B4: NADH-ubiquin 26.1 1.1E+02 0.0023 25.9 4.0 42 10-55 59-101 (125)
328 PRK13729 conjugal transfer pil 26.1 1.8E+02 0.0038 29.8 6.2 28 134-161 68-95 (475)
329 PF05911 DUF869: Plant protein 26.0 8.6E+02 0.019 26.3 13.4 105 138-242 585-702 (769)
330 PF15463 ECM11: Extracellular 26.0 1.6E+02 0.0034 24.5 5.0 39 212-250 100-138 (139)
331 KOG2077 JNK/SAPK-associated pr 26.0 4.8E+02 0.01 28.2 9.3 76 148-243 342-418 (832)
332 TIGR01598 holin_phiLC3 holin, 25.9 1.2E+02 0.0026 23.8 4.0 17 33-49 8-24 (78)
333 PF13094 CENP-Q: CENP-Q, a CEN 25.8 3.9E+02 0.0084 22.2 8.9 43 120-169 19-61 (160)
334 PRK13729 conjugal transfer pil 25.7 3E+02 0.0064 28.2 7.7 22 140-161 67-88 (475)
335 PF10337 DUF2422: Protein of u 25.7 6.2E+02 0.013 24.5 14.0 98 101-198 199-314 (459)
336 PF06698 DUF1192: Protein of u 25.7 1.4E+02 0.003 22.3 4.1 22 143-164 22-43 (59)
337 PRK08476 F0F1 ATP synthase sub 25.6 3.8E+02 0.0083 22.1 19.2 26 140-165 57-82 (141)
338 PLN02320 seryl-tRNA synthetase 25.6 6.6E+02 0.014 25.8 10.1 75 137-213 95-173 (502)
339 PF10828 DUF2570: Protein of u 25.6 3.5E+02 0.0075 21.6 9.8 74 137-210 27-108 (110)
340 TIGR00998 8a0101 efflux pump m 25.5 4.9E+02 0.011 23.3 12.5 53 137-189 82-134 (334)
341 PRK04778 septation ring format 25.2 7.2E+02 0.016 25.1 14.2 23 10-32 215-237 (569)
342 PF13706 PepSY_TM_3: PepSY-ass 25.2 75 0.0016 21.0 2.4 16 37-52 9-24 (37)
343 smart00721 BAR BAR domain. 25.2 4.1E+02 0.009 22.3 9.0 62 135-196 134-203 (239)
344 PRK09173 F0F1 ATP synthase sub 25.1 3.9E+02 0.0085 22.0 19.1 20 35-54 3-22 (159)
345 TIGR00153 conserved hypothetic 24.8 4.6E+02 0.0099 22.7 9.4 104 113-220 74-190 (216)
346 cd00089 HR1 Protein kinase C-r 24.7 1.3E+02 0.0028 22.0 3.8 28 136-163 43-70 (72)
347 PF06160 EzrA: Septation ring 24.6 7.4E+02 0.016 25.1 10.9 87 127-213 364-466 (560)
348 CHL00019 atpF ATP synthase CF0 24.6 4.4E+02 0.0095 22.4 13.5 21 110-130 33-53 (184)
349 PRK09343 prefoldin subunit bet 24.5 2.8E+02 0.0061 22.5 6.1 29 167-195 89-117 (121)
350 KOG0980 Actin-binding protein 24.5 1E+03 0.022 26.7 13.7 67 176-242 444-512 (980)
351 PF04791 LMBR1: LMBR1-like mem 24.4 6.3E+02 0.014 24.1 14.4 39 98-142 156-194 (471)
352 PF07989 Microtub_assoc: Micro 24.3 2.6E+02 0.0057 21.4 5.5 35 138-172 39-73 (75)
353 PF10256 Erf4: Golgin subfamil 24.3 2.2E+02 0.0048 22.4 5.4 38 38-80 58-95 (118)
354 PF09755 DUF2046: Uncharacteri 24.2 6.7E+02 0.015 24.4 13.5 22 187-208 181-202 (310)
355 PF05837 CENP-H: Centromere pr 24.0 3.7E+02 0.0081 21.4 9.0 71 149-235 3-73 (106)
356 PF14163 SieB: Superinfection 24.0 2.9E+02 0.0063 22.7 6.2 23 22-44 14-41 (151)
357 PF02944 BESS: BESS motif; In 24.0 78 0.0017 20.8 2.3 27 201-227 9-35 (37)
358 PF12296 HsbA: Hydrophobic sur 23.8 3.4E+02 0.0075 20.9 11.6 107 135-241 8-122 (124)
359 PF13514 AAA_27: AAA domain 23.8 9.8E+02 0.021 26.1 14.6 113 126-238 172-304 (1111)
360 PF06785 UPF0242: Uncharacteri 23.6 7.6E+02 0.017 24.8 11.9 110 122-231 121-252 (401)
361 PF02646 RmuC: RmuC family; I 23.6 6E+02 0.013 23.6 9.4 69 145-213 229-297 (304)
362 PRK04778 septation ring format 23.5 7.7E+02 0.017 24.9 15.4 105 136-240 377-499 (569)
363 COG4980 GvpP Gas vesicle prote 23.5 4.5E+02 0.0097 22.1 10.6 51 137-187 45-103 (115)
364 KOG1961 Vacuolar sorting prote 23.4 5.6E+02 0.012 27.5 9.3 110 136-246 90-210 (683)
365 TIGR01730 RND_mfp RND family e 23.4 4.1E+02 0.009 23.1 7.3 50 138-187 67-119 (322)
366 PRK09174 F0F1 ATP synthase sub 23.3 5.3E+02 0.011 22.9 13.1 46 117-162 69-114 (204)
367 KOG4674 Uncharacterized conser 23.2 5.6E+02 0.012 30.5 9.9 77 134-210 425-501 (1822)
368 PF12606 RELT: Tumour necrosis 23.1 85 0.0018 22.8 2.5 21 37-57 2-22 (50)
369 PRK09548 PTS system ascorbate- 23.1 59 0.0013 33.9 2.3 34 20-57 428-461 (602)
370 PRK14472 F0F1 ATP synthase sub 23.1 4.6E+02 0.0099 22.1 15.6 48 111-158 28-75 (175)
371 PLN02829 Probable galacturonos 23.0 3.1E+02 0.0067 29.1 7.4 91 82-173 181-278 (639)
372 PF04111 APG6: Autophagy prote 22.9 6.4E+02 0.014 23.7 13.3 21 228-248 117-137 (314)
373 PRK13455 F0F1 ATP synthase sub 22.7 4.8E+02 0.01 22.1 13.3 15 216-230 141-155 (184)
374 PRK09859 multidrug efflux syst 22.7 3.7E+02 0.008 25.1 7.3 54 136-189 100-156 (385)
375 PF13801 Metal_resist: Heavy-m 22.4 3.1E+02 0.0068 20.0 5.6 41 151-191 40-80 (125)
376 COG1196 Smc Chromosome segrega 22.4 1.1E+03 0.023 26.1 21.4 84 126-209 812-895 (1163)
377 TIGR01554 major_cap_HK97 phage 22.2 4.7E+02 0.01 24.5 7.9 20 145-164 2-21 (378)
378 PRK08124 flagellar motor prote 22.2 2.7E+02 0.0058 25.6 6.2 57 35-104 181-239 (263)
379 PF14257 DUF4349: Domain of un 22.1 3.3E+02 0.0072 24.2 6.6 26 167-192 166-191 (262)
380 COG2009 SdhC Succinate dehydro 22.0 4.5E+02 0.0097 21.6 7.1 58 31-89 12-70 (132)
381 PRK15396 murein lipoprotein; P 22.0 3.9E+02 0.0085 20.9 6.9 38 136-173 17-56 (78)
382 COG4191 Signal transduction hi 21.7 4.6E+02 0.01 27.7 8.3 88 140-231 340-444 (603)
383 PRK10869 recombination and rep 21.7 8.5E+02 0.018 24.7 10.5 76 119-195 304-381 (553)
384 COG3447 Predicted integral mem 21.7 4.5E+02 0.0098 25.5 7.7 57 53-109 82-141 (308)
385 TIGR03752 conj_TIGR03752 integ 21.6 5.6E+02 0.012 26.3 8.6 24 167-190 109-132 (472)
386 TIGR02977 phageshock_pspA phag 21.6 5.6E+02 0.012 22.5 12.2 92 137-235 19-110 (219)
387 TIGR02894 DNA_bind_RsfA transc 21.6 4.3E+02 0.0094 23.5 7.0 36 139-174 108-143 (161)
388 PF06785 UPF0242: Uncharacteri 21.5 8.4E+02 0.018 24.6 9.8 17 229-245 189-205 (401)
389 PF08700 Vps51: Vps51/Vps67; 21.5 3.3E+02 0.0072 19.8 7.7 53 151-203 21-77 (87)
390 PF09451 ATG27: Autophagy-rela 21.5 96 0.0021 28.2 3.1 22 36-57 200-222 (268)
391 PF03646 FlaG: FlaG protein; 21.4 55 0.0012 25.4 1.4 24 204-227 78-101 (107)
392 COG1842 PspA Phage shock prote 21.3 6.3E+02 0.014 23.0 11.3 14 214-227 137-150 (225)
393 TIGR02971 heterocyst_DevB ABC 21.2 6.1E+02 0.013 22.8 12.1 54 137-190 99-155 (327)
394 KOG2509 Seryl-tRNA synthetase 21.2 8.8E+02 0.019 24.9 9.9 43 120-162 17-61 (455)
395 COG5374 Uncharacterized conser 20.9 2.3E+02 0.005 25.9 5.3 32 149-180 136-167 (192)
396 PF13094 CENP-Q: CENP-Q, a CEN 20.9 4.9E+02 0.011 21.6 7.5 68 137-204 22-89 (160)
397 PRK15081 glutathione ABC trans 20.9 4.5E+02 0.0097 24.4 7.4 35 89-129 192-226 (306)
398 COG3879 Uncharacterized protei 20.9 3.8E+02 0.0082 25.3 6.8 40 135-174 57-96 (247)
399 PF08657 DASH_Spc34: DASH comp 20.9 2.2E+02 0.0049 26.4 5.4 36 139-174 177-212 (259)
400 PF10779 XhlA: Haemolysin XhlA 20.8 3.5E+02 0.0076 19.9 7.0 32 140-171 4-35 (71)
401 KOG3647 Predicted coiled-coil 20.8 6E+02 0.013 24.9 8.3 71 89-168 89-159 (338)
402 TIGR00261 traB pheromone shutd 20.7 5.6E+02 0.012 25.2 8.3 13 92-104 285-297 (380)
403 cd07593 BAR_MUG137_fungi The B 20.7 4.8E+02 0.01 23.6 7.3 47 136-182 115-161 (215)
404 PF05546 She9_MDM33: She9 / Md 20.7 6.7E+02 0.015 23.1 14.2 50 143-192 33-82 (207)
405 PF00015 MCPsignal: Methyl-acc 20.6 4.7E+02 0.01 21.3 13.2 68 139-206 90-157 (213)
406 TIGR03545 conserved hypothetic 20.6 9.4E+02 0.02 24.8 10.4 18 114-131 102-119 (555)
407 PF06103 DUF948: Bacterial pro 20.6 3.7E+02 0.0081 20.1 8.4 29 216-244 50-78 (90)
408 KOG3915 Transcription regulato 20.3 5.5E+02 0.012 27.0 8.3 51 136-189 493-543 (641)
409 PRK14474 F0F1 ATP synthase sub 20.3 6.6E+02 0.014 22.8 14.6 35 103-137 7-41 (250)
410 PRK14160 heat shock protein Gr 20.2 4.3E+02 0.0093 24.1 6.9 14 186-199 114-127 (211)
411 COG0255 RpmC Ribosomal protein 20.1 3.3E+02 0.0073 20.8 5.3 48 141-191 10-57 (69)
412 PF02153 PDH: Prephenate dehyd 20.1 6.2E+02 0.013 22.5 7.9 45 122-166 200-245 (258)
413 PRK08452 flagellar protein Fla 20.0 73 0.0016 26.7 1.9 23 204-226 94-116 (124)
414 PF05529 Bap31: B-cell recepto 20.0 5.5E+02 0.012 21.8 13.4 21 152-172 157-177 (192)
No 1
>PRK09039 hypothetical protein; Validated
Probab=96.57 E-value=0.53 Score=44.35 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=65.5
Q ss_pred hhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHH-HHHHHhhHHHH
Q 025643 128 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ-VYKVETQAADL 203 (250)
Q Consensus 128 gRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ss-vyK~E~~A~gL 203 (250)
..+..+++..+.+...|.-|++-|+.+++.+..|+..+..+|++-.--+.++..-+..|+..+.. +-..++=...+
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 67888999999999999999999999999999999999999999988888999999999888744 55555554445
No 2
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.40 E-value=0.48 Score=39.77 Aligned_cols=100 Identities=16% Similarity=0.235 Sum_probs=60.1
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhH
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREA 215 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA 215 (250)
-+...+....++.+.++.+.+....+......-++++...+..++.....++++-......++....+. .+-
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~--------~~~ 153 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ--------KEL 153 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Confidence 445555555555555666655555555566666666666666677777777777777777777777666 444
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 216 LKLRAEVASMASLLKRQRAMMDKQIMKI 243 (250)
Q Consensus 216 ~~LRsEVAs~AS~lK~qR~aL~k~l~KI 243 (250)
.+.+.++..+..+++.-+...+.-..++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (191)
T PF04156_consen 154 QDSREEVQELRSQLERLQENLQQLEEKI 181 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544444333333
No 3
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=96.06 E-value=0.37 Score=43.84 Aligned_cols=174 Identities=21% Similarity=0.221 Sum_probs=88.8
Q ss_pred CCchhHHHHHHHHHH---------HHHHHHHhhhHHHHHHHHHhhhhHhhHhhHHhHH---H-HHHHh-HHHHHHHHhhc
Q 025643 34 PPGFWFGLVSSIFLL---------ILVYLIFSHSFLVLSMLLWQDFVLHGVSQYQTYE---D-AFFSK-VKDELVSAREH 99 (250)
Q Consensus 34 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~lq~~~~~~~sqy~~yE---d-~fF~k-iKegv~~A~eh 99 (250)
||..|-.+..+.+.. |.+..++---.|..+++..|.+ .++|..-. + ..... ..+.+-.|.-|
T Consensus 24 p~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~----~~~~~~~~n~~~~~~a~~~~~~~l~raqrn 99 (216)
T KOG1962|consen 24 PPRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKY----VSEYGSMANPTDQPLARTHLLEALFRAQRN 99 (216)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhcccCCccchHHHHHHHHHHHHHHhh
Confidence 888887766553321 1122222223456667777776 45554433 1 11222 34444455555
Q ss_pred chhhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHH
Q 025643 100 PAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETEL 179 (250)
Q Consensus 100 P~~a~g~a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkL 179 (250)
-||++ .+.-.+++. +|= .+-+++...+++. ..|.++...+++..+..++ |++..+...+|...=+++|
T Consensus 100 ~YisG-f~LFL~lvI---~R~---~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el 167 (216)
T KOG1962|consen 100 LYISG-FVLFLSLVI---RRL---HTLLRELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETEL 167 (216)
T ss_pred hHHhH-HHHHHHHHH---HHH---HHHHHHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHH
Confidence 55543 333333332 222 2334555555554 5555666666666555443 3333333444444444445
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHH
Q 025643 180 KNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVAS 224 (250)
Q Consensus 180 r~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs 224 (250)
+...+.+....+.+--..+|+.++.+.-..+ ..|.++||.+|-+
T Consensus 168 ~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL-lee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 168 EKKQKKLEKAQKKVDALKKQSEGLQDEYDRL-LEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHHHhc
Confidence 5555555555566666667777776655544 3477888888753
No 4
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=96.03 E-value=0.035 Score=42.55 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhhHhhHhhHHhHHHHHHHhHHHHHH----HHhhcchhhHHHHHHHhHhh
Q 025643 60 LVLSMLLWQDFVLHGVSQYQTYEDAFFSKVKDELV----SAREHPAAATGVALTAGLLF 114 (250)
Q Consensus 60 ~~~~~~~lq~~~~~~~sqy~~yEd~fF~kiKegv~----~A~ehP~~a~g~a~~aglll 114 (250)
.+..-+.+.+.++.+...++.+-+.+-.+.++++. .+++||+.+.|+|+++|||+
T Consensus 29 ~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~svgiAagvG~ll 87 (94)
T PF05957_consen 29 ADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSVGIAAGVGFLL 87 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 44555666677777777777777777777666554 78999999999999999986
No 5
>PRK11637 AmiB activator; Provisional
Probab=95.46 E-value=0.88 Score=43.23 Aligned_cols=94 Identities=12% Similarity=0.170 Sum_probs=52.1
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhH
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKL 218 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~L 218 (250)
..+++.+++++.++..+++.+.+++.....+.++..=..+|..+..+|..+-..+-+++.+. ..+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei---------------~~l 108 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQI---------------DEL 108 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH
Confidence 34555556666666666666655555555555544444444444444444444444443332 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025643 219 RAEVASMASLLKRQRAMMDKQIMKISELG 247 (250)
Q Consensus 219 RsEVAs~AS~lK~qR~aL~k~l~KIs~~G 247 (250)
..+++.+-.++.+++..+.+++.-+-..|
T Consensus 109 ~~eI~~~q~~l~~~~~~l~~rlra~Y~~g 137 (428)
T PRK11637 109 NASIAKLEQQQAAQERLLAAQLDAAFRQG 137 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56667777777777777777766665544
No 6
>PRK10404 hypothetical protein; Provisional
Probab=95.43 E-value=0.053 Score=43.52 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=40.3
Q ss_pred HHHHHhhhhHhhHhhHHhHHHHHHHhHHHHH----HHHhhcchhhHHHHHHHhHhh
Q 025643 63 SMLLWQDFVLHGVSQYQTYEDAFFSKVKDEL----VSAREHPAAATGVALTAGLLF 114 (250)
Q Consensus 63 ~~~~lq~~~~~~~sqy~~yEd~fF~kiKegv----~~A~ehP~~a~g~a~~aglll 114 (250)
.=+.++..+..+..+....++.+..+.|+++ ..+++||+-+.|+++++||++
T Consensus 39 lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~avGiaagvGlll 94 (101)
T PRK10404 39 LKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVL 94 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3345666666667777778888888777765 488999999999999999875
No 7
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.20 E-value=0.54 Score=43.19 Aligned_cols=114 Identities=17% Similarity=0.254 Sum_probs=70.8
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHhcccCC-
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNA--GNQVQRLAKQVYKVETQAADLMEGLREIP- 211 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~a--G~qIq~L~ssvyK~E~~A~gL~d~LR~LP- 211 (250)
+.+.++-+.+..++..++.++++...++....-+++.+.+++.+|.++ .+++..|-..++..+++...|.|.|.++=
T Consensus 38 ~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~ 117 (239)
T COG1579 38 AELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELME 117 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666665555555555555555555322 23455555555555555555555544443
Q ss_pred -----chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 025643 212 -----GREALKLRAEVASMASLLKRQRAMMDKQIMKISELGV 248 (250)
Q Consensus 212 -----sreA~~LRsEVAs~AS~lK~qR~aL~k~l~KIs~~GV 248 (250)
..+...++.++..+-.++...+..++.++.+|-+-|.
T Consensus 118 ~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~ 159 (239)
T COG1579 118 EIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQ 159 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888888888888888877654
No 8
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.15 E-value=1.8 Score=38.71 Aligned_cols=128 Identities=17% Similarity=0.242 Sum_probs=98.0
Q ss_pred hccchhHHHH---------HHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHH
Q 025643 114 FMRGPRRFLF---------RHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGN 184 (250)
Q Consensus 114 ll~gPRRfLy---------r~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~ 184 (250)
.+|.|.+++| +.-.+.+..-...+...+.++..|...++.+..+..+....+.....+-.+-..+-..-..
T Consensus 15 ~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~ 94 (264)
T PF06008_consen 15 AWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQ 94 (264)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999988 2233334444556788888888888888888888888888887777777777777777777
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 025643 185 QVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKR-----QRAMMDKQIM 241 (250)
Q Consensus 185 qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~-----qR~aL~k~l~ 241 (250)
.|+.+...|-.+-.++.++=.....+|+.+-.+..+|+..|-.++++ +|...+.++.
T Consensus 95 ~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~ 156 (264)
T PF06008_consen 95 FIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELK 156 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 88888888888888888877777789999999999999999998853 4555554443
No 9
>PRK10132 hypothetical protein; Provisional
Probab=91.98 E-value=0.54 Score=38.31 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=34.3
Q ss_pred HHHHhhhhHhhHhhHHhHHHHHHHhHHHHHH----HHhhcchhhHHHHHHHhHhh
Q 025643 64 MLLWQDFVLHGVSQYQTYEDAFFSKVKDELV----SAREHPAAATGVALTAGLLF 114 (250)
Q Consensus 64 ~~~lq~~~~~~~sqy~~yEd~fF~kiKegv~----~A~ehP~~a~g~a~~aglll 114 (250)
=+.+++.+..+...+...|+. ..+.|+++. .+++||..+.|+++++||++
T Consensus 47 R~r~~~~L~~ar~~l~~~~~~-~~~~~~a~~~~~~~V~~~Pw~svgiaagvG~ll 100 (108)
T PRK10132 47 RRKAQALLKETRARMHGRTRV-QQAARDAVGCADTFVRERPWCSVGTAAAVGIFI 100 (108)
T ss_pred HHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 345555666666666666663 455566554 67779999999999988875
No 10
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=91.61 E-value=4.1 Score=40.38 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=70.4
Q ss_pred HHHHHHHHHhHHHHHHhH-----HhhHHHHHHHHHHHHHHHHHHHchHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 025643 134 EAMFVRAEKNVNELNLSG-----ELMKKESKKLLERAALAEKEMIRGET--ELKNAGNQVQRLAKQVYKVETQAADLMEG 206 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~sv-----dl~k~Es~KL~eraa~AE~Em~RGrt--kLr~aG~qIq~L~ssvyK~E~~A~gL~d~ 206 (250)
++|+..+|+-||+|.+-+ .-...|.++.++|+..|...+..=|+ .+-.-.++......-+.+.|.+-..+.-.
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ae 301 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAE 301 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999997643 33444555555555544444432221 12234456667788888999988888877
Q ss_pred cccC-----Cch-hHHhHHHHHHHHHHHHHHHHHHHH
Q 025643 207 LREI-----PGR-EALKLRAEVASMASLLKRQRAMMD 237 (250)
Q Consensus 207 LR~L-----Psr-eA~~LRsEVAs~AS~lK~qR~aL~ 237 (250)
|..| |.. +-..++++|+.+-.++.++|.-+.
T Consensus 302 L~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 302 YAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 7755 333 667889999999999999888774
No 11
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=91.30 E-value=10 Score=33.68 Aligned_cols=89 Identities=26% Similarity=0.333 Sum_probs=67.4
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCch-
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR- 213 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsr- 213 (250)
.....++.++.+....+..+..++.+.++|+..+|.....=...|+..+..|+++--+.-+....-..+-+.++.|..+
T Consensus 106 ~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~l 185 (237)
T PF00261_consen 106 RRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKL 185 (237)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4567788888888888899999999999999999999999999999999999998766665555545555555555444
Q ss_pred hHHhHHHHHH
Q 025643 214 EALKLRAEVA 223 (250)
Q Consensus 214 eA~~LRsEVA 223 (250)
.-.+-|++.|
T Consensus 186 keaE~Rae~a 195 (237)
T PF00261_consen 186 KEAENRAEFA 195 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334454444
No 12
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.20 E-value=12 Score=32.63 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=48.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHH
Q 025643 151 GELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLK 230 (250)
Q Consensus 151 vdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK 230 (250)
++..+.....+.++.....+++...+.++.....+|+..-+..-..+.......+.+.+++. +-.+.+.++..+...+.
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~l~ 143 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQN-ELEERKQRLSQLQSQLA 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444443334333333222111222233333333322 33457777888899999
Q ss_pred HHHHHHHHHHHHHhhc
Q 025643 231 RQRAMMDKQIMKISEL 246 (250)
Q Consensus 231 ~qR~aL~k~l~KIs~~ 246 (250)
..|..+-+.+..|+--
T Consensus 144 ~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 144 RRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999888754
No 13
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.16 E-value=7 Score=32.09 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=47.1
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHH
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQV 193 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssv 193 (250)
..-.....+...+...++.+++..++|.++.+.+|.++.--..+.++..++++++....
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777888888889999999999999999999888888888888888765543
No 14
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=89.57 E-value=7.6 Score=33.26 Aligned_cols=23 Identities=26% Similarity=0.683 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH
Q 025643 39 FGLVSSIFLLILVYLIFSHSFLV 61 (250)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
.|.+.+++..+++|+.+.|+|+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l 35 (199)
T PF10112_consen 13 LGVLIAAITFLVSFFGFDHSFLL 35 (199)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Confidence 45555556666677777777654
No 15
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=89.52 E-value=1.1 Score=36.88 Aligned_cols=39 Identities=31% Similarity=0.401 Sum_probs=29.0
Q ss_pred hhHHhHHHHHHHhHHHHHH----HHhhcchhhHHHHHHHhHhh
Q 025643 76 SQYQTYEDAFFSKVKDELV----SAREHPAAATGVALTAGLLF 114 (250)
Q Consensus 76 sqy~~yEd~fF~kiKegv~----~A~ehP~~a~g~a~~aglll 114 (250)
.+....=|.+....|+++. .+.+||.-+.|+++++|+|+
T Consensus 55 ~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~VGvaAaVGlll 97 (104)
T COG4575 55 DRLGDTGDAVVQRSKAAADATDDYVRENPWQGVGVAAAVGLLL 97 (104)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3333444666677777664 78999999999999999875
No 16
>PRK14161 heat shock protein GrpE; Provisional
Probab=89.48 E-value=7.8 Score=33.99 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccC
Q 025643 131 RSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI 210 (250)
Q Consensus 131 ~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~L 210 (250)
.+|+.+..-++.-++.++..++.++.|.+.+.|+..-+..||..=|-... ++... -.-|..|+-+..|++.+..|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~---ke~~~--~~~~a~~~~~~~LLpv~Dnl 82 (178)
T PRK14161 8 NNEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLE---KARDE--AKDYAIATFAKELLNVSDNL 82 (178)
T ss_pred ccHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHHhhHHhHH
Confidence 36888999999999999999988888888888777766666655443222 22222 23477888899998888777
Q ss_pred Cch
Q 025643 211 PGR 213 (250)
Q Consensus 211 Psr 213 (250)
=+.
T Consensus 83 erA 85 (178)
T PRK14161 83 SRA 85 (178)
T ss_pred HHH
Confidence 543
No 17
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.42 E-value=17 Score=33.15 Aligned_cols=33 Identities=9% Similarity=0.153 Sum_probs=14.0
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHc
Q 025643 142 KNVNELNLSGELMKKESKKLLERAALAEKEMIR 174 (250)
Q Consensus 142 ~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~R 174 (250)
.+.+.++..++.++.+.+.+......+++++.+
T Consensus 151 ~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~ 183 (423)
T TIGR01843 151 AQIKQLEAELAGLQAQLQALRQQLEVISEELEA 183 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 18
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.28 E-value=20 Score=32.65 Aligned_cols=23 Identities=4% Similarity=0.138 Sum_probs=9.6
Q ss_pred CCchhHHHHHHHH-HHHHHHHHHh
Q 025643 34 PPGFWFGLVSSIF-LLILVYLIFS 56 (250)
Q Consensus 34 ~~~~~~~~~~~~~-~~~~~~~~~~ 56 (250)
|+..|+.++..+| +.+++|++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (423)
T TIGR01843 2 RFARLITWLIAGLVVIFFLWAYFA 25 (423)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhe
Confidence 4444444333333 3334455553
No 19
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.28 E-value=18 Score=36.01 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=55.0
Q ss_pred hhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Q 025643 129 RLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLR 208 (250)
Q Consensus 129 RF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR 208 (250)
...++ .-++..+++.++++.++...+.+.++|++.+.-.|.|+..=...|++++..+..+-+.+- ++-+.|.
T Consensus 33 ~~a~~-~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~-------~~~~~l~ 104 (420)
T COG4942 33 AAADD-KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA-------DLNARLN 104 (420)
T ss_pred HHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH-------HHHHHHH
Confidence 34444 668889999999999999999999999988888888776666666666655555544444 4444454
Q ss_pred cCCchh
Q 025643 209 EIPGRE 214 (250)
Q Consensus 209 ~LPsre 214 (250)
.++..+
T Consensus 105 ~l~~q~ 110 (420)
T COG4942 105 ALEVQE 110 (420)
T ss_pred HHHHHH
Confidence 454444
No 20
>PRK14160 heat shock protein GrpE; Provisional
Probab=88.26 E-value=11 Score=34.06 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhccc
Q 025643 132 SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLRE 209 (250)
Q Consensus 132 SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~ 209 (250)
|+|+.+...+..++.|++.++.+++|.+.+.++..-+..|| -+..+-.++-.. .-|..++-+..|+..+..
T Consensus 51 ~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~Aef-------eN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn 123 (211)
T PRK14160 51 SNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEY-------DNYRKRTAKEKEGIYSDACEDVLKELLPVLDN 123 (211)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 44555666666666666666666666666655555444444 444444433332 356788899999988888
Q ss_pred CCch
Q 025643 210 IPGR 213 (250)
Q Consensus 210 LPsr 213 (250)
|=+.
T Consensus 124 LerA 127 (211)
T PRK14160 124 LERA 127 (211)
T ss_pred HHHH
Confidence 7655
No 21
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=84.14 E-value=44 Score=32.71 Aligned_cols=108 Identities=16% Similarity=0.127 Sum_probs=60.0
Q ss_pred hhHHHHHHHhHhhcc-chhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHH
Q 025643 102 AATGVALTAGLLFMR-GPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELK 180 (250)
Q Consensus 102 ~a~g~a~~agllll~-gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr 180 (250)
+.+.|++.+..+++| +++.-|-++.-.++..-...+......-.+=......+.++...+++....+.-|..+++.
T Consensus 137 iGi~~a~~v~~l~~P~~~~~~l~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~~~~--- 213 (650)
T PF04632_consen 137 IGILCATLVSMLFFPQRARRQLRRRLAQRLADLARWLAALLDGDPDPAAERRRLARDIAALESLLSHARYESPRLRR--- 213 (650)
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHhhccccCchhHH---
Confidence 455666677888888 7777777777777766555555443322222223445555666666666666655544333
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhcccCCch
Q 025643 181 NAGNQVQRLAKQVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 181 ~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsr 213 (250)
....++.+..+....=.....+-+.+..+|..
T Consensus 214 -~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 245 (650)
T PF04632_consen 214 -RRRRLRALQARLLRLLALLRSLARRLAALPDA 245 (650)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 33444445444444444555555555544443
No 22
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=84.05 E-value=24 Score=29.66 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=29.5
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHH-HHHHHHHHchHHHHHHHHHHHH
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERA-ALAEKEMIRGETELKNAGNQVQ 187 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~era-a~AE~Em~RGrtkLr~aG~qIq 187 (250)
..-..|+...++++..+...+.|.+...+.+ ..|+.+...-+.+.+.....+.
T Consensus 55 ~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~ 108 (167)
T PRK14475 55 RLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRA 108 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777777665443 3445555444444443333333
No 23
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.02 E-value=24 Score=29.58 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=61.9
Q ss_pred hhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 025643 128 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 198 (250)
Q Consensus 128 gRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~ 198 (250)
+.....+..++..+++..++...+..+.++..++.+--...+++++.-..++......+..+.+..-+..+
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~ 151 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQK 151 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778899999999999999999999999999998888888888888888888888888888888888773
No 24
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=83.50 E-value=26 Score=30.17 Aligned_cols=92 Identities=25% Similarity=0.334 Sum_probs=48.4
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHH--------HHHHH-------HHHHHHHHHHHHhhHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELK--------NAGNQ-------VQRLAKQVYKVETQAA 201 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr--------~aG~q-------Iq~L~ssvyK~E~~A~ 201 (250)
+..+-+..+.+...++....+..+++++|..| +..|+-+|- ..-.+ +......+-+++.+-.
T Consensus 46 ~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A---l~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~ 122 (221)
T PF04012_consen 46 LARVMANQKRLERKLDEAEEEAEKWEKQAELA---LAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLE 122 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667777777788888888777666 555555542 22223 3333334444444444
Q ss_pred HHHHhcccCCch-hHHhHHHHHHHHHHHHHH
Q 025643 202 DLMEGLREIPGR-EALKLRAEVASMASLLKR 231 (250)
Q Consensus 202 gL~d~LR~LPsr-eA~~LRsEVAs~AS~lK~ 231 (250)
.+.+.|.++-.+ +.+.-|.+++.....+..
T Consensus 123 ~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~ 153 (221)
T PF04012_consen 123 ELEAKLEELKSKREELKARENAAKAQKKVNE 153 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444 444445555544444433
No 25
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.12 E-value=37 Score=34.98 Aligned_cols=107 Identities=18% Similarity=0.298 Sum_probs=78.8
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHH----HHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccc
Q 025643 134 EAMFVRAEKNVNELNLSGELMKK----ESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLRE 209 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~----Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~ 209 (250)
++++.....++.+|...-+..+. |.+.|.+....=+.|.++=..+++....+++.++..+..=|-.-.-|...+..
T Consensus 400 ~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 400 QALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777888888877777654 44555666666678888888999999999999999999999999999999999
Q ss_pred CCch-hHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 210 IPGR-EALKLRAEVASMASLLKRQRAMMDKQI 240 (250)
Q Consensus 210 LPsr-eA~~LRsEVAs~AS~lK~qR~aL~k~l 240 (250)
+|.. .=+..=.-|=.++..+++|+.-++|-+
T Consensus 480 ~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl 511 (594)
T PF05667_consen 480 LPKDVNRSAYTRRILEIVKNIRKQKEEIEKIL 511 (594)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9987 111222335566677777776555443
No 26
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=82.95 E-value=23 Score=30.34 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=49.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhHHH----------HHHHHHhhhhHhhHhhHHhHHHHHHHh-------------
Q 025643 32 SNPPGFWFGLVSSIFLLILVYLIFSHSFLV----------LSMLLWQDFVLHGVSQYQTYEDAFFSK------------- 88 (250)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~lq~~~~~~~sqy~~yEd~fF~k------------- 88 (250)
..+..||++++.++...+.+|+...-..-. .-.+.++.-+..|..+++..|+....-
T Consensus 28 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k~~~~~gls~~e~~~~~~~l~ea~~~i~~i~~~~~~i~~~~~~~~~~~~~ 107 (199)
T PF10112_consen 28 GFDHSFLLSLLIGAVAFAVVYLFGKRRQRRKFLKEAGLSDREYEYIREILEEAKEKIRRIEKAIKRIRDLEMIEKVSRIE 107 (199)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcccccchhHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344568888888777777766543322111 113455666777777777777766532
Q ss_pred --HHHHHHHHhhcchhhHHHHHHHhHhhccchhHHHHHHh
Q 025643 89 --VKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHT 126 (250)
Q Consensus 89 --iKegv~~A~ehP~~a~g~a~~agllll~gPRRfLyr~T 126 (250)
.+.-......||-- ++.-|+|+|++-
T Consensus 108 ~~~~~I~~~v~~~P~~------------l~~a~~Fl~~yL 135 (199)
T PF10112_consen 108 KIARRIFKYVEKDPER------------LTQARKFLYYYL 135 (199)
T ss_pred HHHHHHHHHHHHCHHh------------HHHHHHHHHHHh
Confidence 23344455667764 345688888764
No 27
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=82.50 E-value=22 Score=30.83 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025643 219 RAEVASMASLLKRQRAMMDKQI 240 (250)
Q Consensus 219 RsEVAs~AS~lK~qR~aL~k~l 240 (250)
-.++.+|-..+++-|+...+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~ 130 (155)
T PRK06569 109 NQNIEDINLAAKQFRTNKSEAI 130 (155)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH
Confidence 3455555555555555554444
No 28
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=82.44 E-value=52 Score=34.01 Aligned_cols=13 Identities=38% Similarity=0.555 Sum_probs=10.9
Q ss_pred CCCcchhhhhHHH
Q 025643 2 GRGSSTLCDSIQR 14 (250)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (250)
|.|-||+.|+|.-
T Consensus 33 GsGKS~ildAi~~ 45 (1164)
T TIGR02169 33 GSGKSNIGDAILF 45 (1164)
T ss_pred CCCHHHHHHHHHH
Confidence 7888999998865
No 29
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.02 E-value=43 Score=31.01 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=47.8
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHH-----------------HHHHHHHHHHHHHHHHHhhH
Q 025643 138 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELK-----------------NAGNQVQRLAKQVYKVETQA 200 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr-----------------~aG~qIq~L~ssvyK~E~~A 200 (250)
...+..+++|+..+-....|++++.+|...+|+.+ .+-++.+ +.-.+|..+-...-+.+...
T Consensus 48 ~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 48 EALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888889999999999999988888888887 4444433 33344444455555555555
Q ss_pred HHHHHhcccC
Q 025643 201 ADLMEGLREI 210 (250)
Q Consensus 201 ~gL~d~LR~L 210 (250)
.++.+.+..+
T Consensus 127 ~~l~~~~~~~ 136 (239)
T COG1579 127 EDLKERLERL 136 (239)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 30
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=81.38 E-value=65 Score=32.63 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=40.5
Q ss_pred hhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 025643 102 AATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKN 181 (250)
Q Consensus 102 ~a~g~a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~ 181 (250)
+..++...+|+=.+-+-+.-|=. ...|..++.. .+.+.++++++...++.+..+.+.+.+.....+.+..+-..++.+
T Consensus 171 l~~Ai~~LlGl~~~~~L~~dl~~-~~~~~~~~~~-~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~ 248 (650)
T TIGR03185 171 LKEAIEVLLGLDLIDRLAGDLTN-VLRRRKKSEL-PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLES 248 (650)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHH-HHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556665554444332221 1233344332 455666666666666666666666655555555555444444443
Q ss_pred H
Q 025643 182 A 182 (250)
Q Consensus 182 a 182 (250)
.
T Consensus 249 l 249 (650)
T TIGR03185 249 L 249 (650)
T ss_pred H
Confidence 3
No 31
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.32 E-value=76 Score=33.39 Aligned_cols=158 Identities=13% Similarity=0.156 Sum_probs=91.1
Q ss_pred HHHHHHHhHHHHHHHHhhcchh--hHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHH
Q 025643 81 YEDAFFSKVKDELVSAREHPAA--ATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKES 158 (250)
Q Consensus 81 yEd~fF~kiKegv~~A~ehP~~--a~g~a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es 158 (250)
.++-|...||+-+.--...|.. ++.- ....--+-..+||.+.| -.|+. |- +.+.++--++++.-+++++.+.
T Consensus 501 ~~~sF~~~Ik~lL~r~~~qPill~s~~k---~~~p~~~E~l~lL~~a~-~vlre-eY-i~~~~~ar~ei~~rv~~Lk~~~ 574 (717)
T PF10168_consen 501 SPPSFEKHIKSLLQRSSSQPILLKSSDK---SSSPSPQECLELLSQAT-KVLRE-EY-IEKQDLAREEIQRRVKLLKQQK 574 (717)
T ss_pred ccchHHHHHHHHhcCCCCCCeecCCCcc---ccCCCCHHHHHHHHHHH-HHHHH-HH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888899877644445755 1211 11111233456776544 45542 22 3334555666777777777777
Q ss_pred HHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccc-C--CchhHHhHHHHHHHHHHHHHHHHHH
Q 025643 159 KKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLRE-I--PGREALKLRAEVASMASLLKRQRAM 235 (250)
Q Consensus 159 ~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~-L--PsreA~~LRsEVAs~AS~lK~qR~a 235 (250)
++-.+++...+++.+.=+.+-..-+..+..+...=-++++++..++..+.. . .+.-=-+++.|+..|..+++.-+..
T Consensus 575 e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~s 654 (717)
T PF10168_consen 575 EQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKAS 654 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666666666533322222222334555555555667777777666654 2 3443378888888888888877777
Q ss_pred HHHHHHHHh
Q 025643 236 MDKQIMKIS 244 (250)
Q Consensus 236 L~k~l~KIs 244 (250)
+++.=+|+.
T Consensus 655 i~~lk~k~~ 663 (717)
T PF10168_consen 655 IEQLKKKLD 663 (717)
T ss_pred HHHHHHHHH
Confidence 776555553
No 32
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=81.29 E-value=38 Score=38.48 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=61.4
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCch-hHHh
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR-EALK 217 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsr-eA~~ 217 (250)
+|..+.+.++.++|..+.-++.-.+.-..|++-++-.-+.++.|+.-|..+-.+++..|+.|..--..|++|-++ |.++
T Consensus 1553 ~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1553 RARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777776666666666777888888888899999999999999999999998888888887766 5554
Q ss_pred H
Q 025643 218 L 218 (250)
Q Consensus 218 L 218 (250)
.
T Consensus 1633 ~ 1633 (1758)
T KOG0994|consen 1633 H 1633 (1758)
T ss_pred H
Confidence 4
No 33
>PRK11637 AmiB activator; Provisional
Probab=80.56 E-value=55 Score=31.30 Aligned_cols=63 Identities=6% Similarity=0.061 Sum_probs=50.9
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVE 197 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E 197 (250)
.-++..+++++.+...++..+.+++.+++.+...++++..-..++.....++...+..+|+.-
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g 137 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQG 137 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 336677788888888888888888888888888888888888888888888888888888843
No 34
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=80.51 E-value=73 Score=32.72 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=11.2
Q ss_pred CCCcchhhhhHHHH
Q 025643 2 GRGSSTLCDSIQRL 15 (250)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (250)
|-|-||+-|.|.=+
T Consensus 33 GsGKS~ll~ai~~~ 46 (1179)
T TIGR02168 33 GCGKSNIVDAIRWV 46 (1179)
T ss_pred CCChhHHHHHHHHH
Confidence 78999999887654
No 35
>PRK14140 heat shock protein GrpE; Provisional
Probab=80.14 E-value=27 Score=31.16 Aligned_cols=57 Identities=18% Similarity=0.312 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHhcccCCc
Q 025643 156 KESKKLLERAALAEKEMIRGETELKNAGNQVQRLA--KQVYKVETQAADLMEGLREIPG 212 (250)
Q Consensus 156 ~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~--ssvyK~E~~A~gL~d~LR~LPs 212 (250)
.+..++++.+...++.+.|-.+++-|..+-.++-. ..-|.+++-+..|++.+..|=.
T Consensus 44 ~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLer 102 (191)
T PRK14140 44 AKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFER 102 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444555555555444444433 3457788999999988887733
No 36
>PRK02224 chromosome segregation protein; Provisional
Probab=79.84 E-value=63 Score=33.23 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=10.1
Q ss_pred CCCcchhhhhHHH
Q 025643 2 GRGSSTLCDSIQR 14 (250)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (250)
|.|-||+.|+|.-
T Consensus 33 g~GKStil~ai~~ 45 (880)
T PRK02224 33 GSGKSSLLEACFF 45 (880)
T ss_pred CCCHHHHHHHHHH
Confidence 7788888888754
No 37
>PRK04863 mukB cell division protein MukB; Provisional
Probab=78.88 E-value=67 Score=36.60 Aligned_cols=101 Identities=11% Similarity=0.139 Sum_probs=45.1
Q ss_pred HHhHhhccchhHHHHHHhhhh---hccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHH------HHHchHHHH
Q 025643 109 TAGLLFMRGPRRFLFRHTFGR---LRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEK------EMIRGETEL 179 (250)
Q Consensus 109 ~agllll~gPRRfLyr~TlgR---F~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~------Em~RGrtkL 179 (250)
++-++.=+.-||-++--+.|- ...-+..+..++.+..++...++.+....++|++.+..|++ ++.+-..++
T Consensus 271 aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei 350 (1486)
T PRK04863 271 AADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKI 350 (1486)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666444321 11112233344555555554445455445555444444433 223334444
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhccc
Q 025643 180 KNAGNQVQRLAKQVYKVETQAADLMEGLRE 209 (250)
Q Consensus 180 r~aG~qIq~L~ssvyK~E~~A~gL~d~LR~ 209 (250)
.....++..+-...-..+.....+.+.+.+
T Consensus 351 ~~l~~~LeELee~Lee~eeeLeeleeelee 380 (1486)
T PRK04863 351 ERYQADLEELEERLEEQNEVVEEADEQQEE 380 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444444444444433
No 38
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=78.61 E-value=32 Score=27.47 Aligned_cols=69 Identities=10% Similarity=0.158 Sum_probs=32.2
Q ss_pred HHhhc-chhhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhh--HHHHHHHHHHHH
Q 025643 95 SAREH-PAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELM--KKESKKLLERAA 166 (250)
Q Consensus 95 ~A~eh-P~~a~g~a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~--k~Es~KL~eraa 166 (250)
+-+.| |.+.++.+++.+++...=.|+| .+-.++..=++-+..-+.++..+.+.++.+ +++..+|+-+++
T Consensus 4 ~~~~~w~ii~a~~~~~~~~~~~~l~~~~---a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~ 75 (106)
T PF10805_consen 4 FIKKNWGIIWAVFGIAGGIFWLWLRRTY---AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELA 75 (106)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34556 7777777766666554433332 112222222222333344444455555554 445444444433
No 39
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.19 E-value=57 Score=33.02 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=19.6
Q ss_pred HHhHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 025643 215 ALKLRAEVASMASLLKRQ-RAMMDKQIMKISE 245 (250)
Q Consensus 215 A~~LRsEVAs~AS~lK~q-R~aL~k~l~KIs~ 245 (250)
|.++|.-+......+.++ +..|.+.+..+++
T Consensus 485 ~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~ 516 (650)
T TIGR03185 485 ADKAKKTLKEFREKLLERKLQQLEEEITKSFK 516 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666655555 6777777777654
No 40
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=77.88 E-value=52 Score=36.47 Aligned_cols=62 Identities=34% Similarity=0.362 Sum_probs=40.7
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHH-HchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCC
Q 025643 150 SGELMKKESKKLLERAALAEKEM-IRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIP 211 (250)
Q Consensus 150 svdl~k~Es~KL~eraa~AE~Em-~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LP 211 (250)
+++..|.+...+++..+.++++. +.+-.++-+..+.+..|.+.+-|+|.+-+.|.+.+.++-
T Consensus 366 ~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 366 SIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555556666665 666667777777777777778888877777777777664
No 41
>PRK14148 heat shock protein GrpE; Provisional
Probab=77.69 E-value=34 Score=30.61 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=41.6
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCch
Q 025643 149 LSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 149 ~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsr 213 (250)
..++.++.+.+.|++.+..-.+.+.|-.++.-+..+-.++-.. .-|.+|+-+.+|++.+..|=..
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerA 106 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQA 106 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 3344555555555555555556666666666666666655544 3477889999999888877544
No 42
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=77.15 E-value=58 Score=29.64 Aligned_cols=94 Identities=23% Similarity=0.250 Sum_probs=60.4
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccC--------------
Q 025643 145 NELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI-------------- 210 (250)
Q Consensus 145 ~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~L-------------- 210 (250)
++.+..++....+...|.+....-+.|+..-..+|....+++.-+-..+-+.|....+|.+.|...
T Consensus 41 ~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~d 120 (202)
T PF06818_consen 41 RELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESD 120 (202)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccc
Confidence 344444444444444455555555556666666777777777777777888888888888777775
Q ss_pred --------CchhHHhHHHHHHHHHHHHHHHHHHHHH
Q 025643 211 --------PGREALKLRAEVASMASLLKRQRAMMDK 238 (250)
Q Consensus 211 --------PsreA~~LRsEVAs~AS~lK~qR~aL~k 238 (250)
+....-.|+.||-.+..++..+|.-.+.
T Consensus 121 eak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~ 156 (202)
T PF06818_consen 121 EAKAQRQAGEDELGSLRREVERLRAELQRERQRREE 156 (202)
T ss_pred hhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHH
Confidence 1223455788888888888877766654
No 43
>PRK04654 sec-independent translocase; Provisional
Probab=77.07 E-value=23 Score=32.56 Aligned_cols=79 Identities=13% Similarity=0.200 Sum_probs=41.9
Q ss_pred hhccchhHHH-HHHhhhhhccH-HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHH
Q 025643 113 LFMRGPRRFL-FRHTFGRLRSE-EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLA 190 (250)
Q Consensus 113 lll~gPRRfL-yr~TlgRF~SE-Eall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ 190 (250)
|++=||-|+= +-+++|++.-+ ..+++.....+++= ..++.++++.+++++.+..++.+++.....++++++.+++..
T Consensus 17 LlV~GPerLPe~aRtlGk~irk~R~~~~~vk~El~~E-l~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~~~~~ 95 (214)
T PRK04654 17 LVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERE-LEAEELKRSLQDVQASLREAEDQLRNTQQQVEQGARALHDDV 95 (214)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4455676652 33344433221 02344444433222 123455666677766677777777777777777777666444
Q ss_pred HH
Q 025643 191 KQ 192 (250)
Q Consensus 191 ss 192 (250)
+.
T Consensus 96 ~~ 97 (214)
T PRK04654 96 SR 97 (214)
T ss_pred hc
Confidence 33
No 44
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.01 E-value=68 Score=36.17 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=62.9
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHH--------------HHHHH----HHhhHH
Q 025643 140 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLA--------------KQVYK----VETQAA 201 (250)
Q Consensus 140 Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~--------------ssvyK----~E~~A~ 201 (250)
++....+|++.-+..++|..++++..+-..++...-+++++-+..++.-|. ++.-. .+...+
T Consensus 463 l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~ 542 (1293)
T KOG0996|consen 463 LDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKT 542 (1293)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666667777888888888888888888777777776666554441 11111 333445
Q ss_pred HHHHhcccCCch--hHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 202 DLMEGLREIPGR--EALKLRAEVASMASLLKRQRAMMDKQI 240 (250)
Q Consensus 202 gL~d~LR~LPsr--eA~~LRsEVAs~AS~lK~qR~aL~k~l 240 (250)
.|-+...+||+. |..+...++..+..+.++-++.+.+.-
T Consensus 543 ~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~r 583 (1293)
T KOG0996|consen 543 ELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLR 583 (1293)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666677788885 666666666666666665444444433
No 45
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=76.85 E-value=39 Score=27.55 Aligned_cols=98 Identities=12% Similarity=0.189 Sum_probs=65.9
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREAL 216 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~ 216 (250)
+.+.......+...+..++.|++...+.+..|+..|.|--.+=-.+.++|+.+=...-........|... +-
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~--------~~ 83 (132)
T PF07926_consen 12 LQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAE--------AE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 4566677778888889999999999999999999999887777677777766655555555555544432 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 217 KLRAEVASMASLLKRQRAMMDKQIMK 242 (250)
Q Consensus 217 ~LRsEVAs~AS~lK~qR~aL~k~l~K 242 (250)
..+.+....-.....+|..|.+.|..
T Consensus 84 ~a~~~l~~~e~sw~~qk~~le~e~~~ 109 (132)
T PF07926_consen 84 SAKAELEESEASWEEQKEQLEKELSE 109 (132)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444444444455556666655543
No 46
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=76.28 E-value=65 Score=33.24 Aligned_cols=63 Identities=21% Similarity=0.218 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCch-------------hHHhHHHHHHHHHHHHHHHHHHHHH
Q 025643 176 ETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR-------------EALKLRAEVASMASLLKRQRAMMDK 238 (250)
Q Consensus 176 rtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsr-------------eA~~LRsEVAs~AS~lK~qR~aL~k 238 (250)
..++.....||+.+-..+-.++.++..|.+.|+++-.. |+-.|+.+.|.++.++|..+.-.++
T Consensus 282 ~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~q 357 (546)
T PF07888_consen 282 QQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQ 357 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566677777777788888888888888887665 6778888888888777776655443
No 47
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=75.96 E-value=63 Score=32.27 Aligned_cols=96 Identities=22% Similarity=0.265 Sum_probs=56.8
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCC------chhHH
Q 025643 143 NVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIP------GREAL 216 (250)
Q Consensus 143 kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LP------sreA~ 216 (250)
.|+.|+..++..|.|...+.++...++.....-.++|..+..+|..+-..--+......++-..|.++- .+++.
T Consensus 310 ~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~ 389 (522)
T PF05701_consen 310 SVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAE 389 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555666677777777777777788877777776654443333333333433443332 24566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 025643 217 KLRAEVASMASLLKRQRAMMDK 238 (250)
Q Consensus 217 ~LRsEVAs~AS~lK~qR~aL~k 238 (250)
..|.|+..+-.++.+.+..+..
T Consensus 390 ~~~~E~~~~k~E~e~~ka~i~t 411 (522)
T PF05701_consen 390 EAKEEVEKAKEEAEQTKAAIKT 411 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666553
No 48
>PRK14154 heat shock protein GrpE; Provisional
Probab=75.58 E-value=39 Score=30.63 Aligned_cols=60 Identities=10% Similarity=0.202 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCch
Q 025643 154 MKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 154 ~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsr 213 (250)
++.++..|++++..-++.++|-.++.-|..+-.++... .-|.+|+-+..|++.+..|=..
T Consensus 57 l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRA 118 (208)
T PRK14154 57 LEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHG 118 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 33344444444444445555555555555555544433 3467888899999888877554
No 49
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=74.35 E-value=74 Score=32.84 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=53.9
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhH
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREA 215 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA 215 (250)
++..+.++..++...++.++.|.+.|..+..-++++...-+-+++....-|-.+-..+--.=+.-+.|-| +-
T Consensus 100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~--------e~ 171 (546)
T KOG0977|consen 100 LLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALED--------EL 171 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH--------HH
Confidence 4556666677777777777777777777777777766666666664444433332222111111112222 33
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 216 LKLRAEVASMASLLKRQRAMMDKQI 240 (250)
Q Consensus 216 ~~LRsEVAs~AS~lK~qR~aL~k~l 240 (250)
.+|+.|.+.+-++++.-|+.||+++
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4556666666666666666555543
No 50
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=74.06 E-value=50 Score=27.46 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=31.4
Q ss_pred HHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHH
Q 025643 108 LTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKL 161 (250)
Q Consensus 108 ~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL 161 (250)
++..++++---++|+|.-..+-+..=+..+...-.+.++.+..++.+..|.++.
T Consensus 29 ~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~ 82 (156)
T CHL00118 29 ALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQE 82 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444458899987766665555555555555555555555555554443
No 51
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=73.98 E-value=36 Score=25.69 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=48.5
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHH
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV 196 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~ 196 (250)
...++..++-++.++..+|.+.+|...+.+.+-.--++....-.++...-..+..+..++.+.
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345888899999999999999999999988888777777776666666666666666655543
No 52
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.76 E-value=79 Score=29.95 Aligned_cols=167 Identities=13% Similarity=0.209 Sum_probs=79.9
Q ss_pred HHHHhhhhHhhHhhHHhHHHHHHHhH-HHHHHHHhhcchhhHHHHHHHhHhhccchhH-------HHHHH----------
Q 025643 64 MLLWQDFVLHGVSQYQTYEDAFFSKV-KDELVSAREHPAAATGVALTAGLLFMRGPRR-------FLFRH---------- 125 (250)
Q Consensus 64 ~~~lq~~~~~~~sqy~~yEd~fF~ki-Kegv~~A~ehP~~a~g~a~~agllll~gPRR-------fLyr~---------- 125 (250)
-+-|..++.++..-|+.+|...+.-- ---...-...|.+=. ..--=|-++|.-=| |=||.
T Consensus 72 C~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~--lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L 149 (312)
T smart00787 72 CKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKL--LMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGL 149 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999998766330 000001111111100 00011111111111 22332
Q ss_pred --hhhhhccHHHHHHHHHHhHHHH----HHhHHhhHHHHHHHHHHHHHHHH----HHHchHHHHHHHHHHHHHHHHHHHH
Q 025643 126 --TFGRLRSEEAMFVRAEKNVNEL----NLSGELMKKESKKLLERAALAEK----EMIRGETELKNAGNQVQRLAKQVYK 195 (250)
Q Consensus 126 --TlgRF~SEEall~~Ae~kV~eL----r~svdl~k~Es~KL~eraa~AE~----Em~RGrtkLr~aG~qIq~L~ssvyK 195 (250)
.+..+++++.++..-...++++ +..-+.++.|...|++...-.+. |+.+-+.+|+..-.+|...-+.+-.
T Consensus 150 ~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e 229 (312)
T smart00787 150 DENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE 229 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345566666666555554443 33334444555555444444322 5555556666666666665555555
Q ss_pred HHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHH
Q 025643 196 VETQAADLMEGLREIPGREALKLRAEVASMASLLKRQR 233 (250)
Q Consensus 196 ~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR 233 (250)
.+.+-..+.+.+.+.- .+=.++++|++..-+.+.+.|
T Consensus 230 ~~~~l~~l~~~I~~~~-~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 230 LEEELQELESKIEDLT-NKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcC
Confidence 5555555555555331 233345555555444443333
No 53
>KOG3868 consensus Vacuolar H+-ATPase V0 sector, accessory subunit S1 (Ac45) [Energy production and conversion]
Probab=73.54 E-value=2.5 Score=41.86 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=28.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 025643 32 SNPPGFWFGLVSSIFLLILVYLIFSHSFLVLSMLLWQDF 70 (250)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~ 70 (250)
.-.||+|.||+++.+||....+-..-..-.+|||.+||.
T Consensus 362 ffSpgilmGLfvvliLl~IL~~Gl~mllsi~tmdrfdd~ 400 (411)
T KOG3868|consen 362 FFSPGILMGLFVVLILLAILWYGLHMLLSIGTMDRFDDP 400 (411)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhccCc
Confidence 346999999999887776555554444556788888875
No 54
>PHA02562 46 endonuclease subunit; Provisional
Probab=73.46 E-value=90 Score=30.09 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=45.3
Q ss_pred cchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHH-------HHHHHHHchHHHHHHHHHHHHH
Q 025643 116 RGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAA-------LAEKEMIRGETELKNAGNQVQR 188 (250)
Q Consensus 116 ~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa-------~AE~Em~RGrtkLr~aG~qIq~ 188 (250)
+..|+=++..-+|.=.= +.+-.....+++++++.++.+..+.+.+.++.. ..++... ..+..-.+++..
T Consensus 149 ~~er~~il~~l~~~~~~-~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~---~~i~~l~~e~~~ 224 (562)
T PHA02562 149 APARRKLVEDLLDISVL-SEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG---ENIARKQNKYDE 224 (562)
T ss_pred hHhHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHH
Confidence 56688888777663211 122222333444455555555555555444443 3333332 233344455555
Q ss_pred HHHHHHHHHhhHHHHHHhcccC
Q 025643 189 LAKQVYKVETQAADLMEGLREI 210 (250)
Q Consensus 189 L~ssvyK~E~~A~gL~d~LR~L 210 (250)
+.+....++.+-..+.+.|-.+
T Consensus 225 l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 225 LVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666665555444
No 55
>PRK14139 heat shock protein GrpE; Provisional
Probab=72.32 E-value=55 Score=29.09 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=56.7
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhH
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKL 218 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~L 218 (250)
.|+..+..+...++.+++|...|.|+..-+..||..=|-.......+ -.-|..++-+.+|++.+..|=..-.. .
T Consensus 29 ~~~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~-----~~~~a~~~~~~~LLpv~DnLerAl~~-~ 102 (185)
T PRK14139 29 AAEDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAK-----AHKFAIESFAESLLPVKDSLEAALAD-E 102 (185)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHhHHHHHHhc-c
Confidence 45566777777777777777777776666655555333222222222 23467788888998888877544211 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 025643 219 RAEVASMASLLKRQRAMMDKQIMKISELGVS 249 (250)
Q Consensus 219 RsEVAs~AS~lK~qR~aL~k~l~KIs~~GV~ 249 (250)
.....++ ++--+..+.+-+.-..++||.
T Consensus 103 ~~~~~~l---~~Gv~mi~k~l~~vL~k~Gv~ 130 (185)
T PRK14139 103 SGDLEKL---REGVELTLKQLTSAFEKGRVV 130 (185)
T ss_pred cchHHHH---HHHHHHHHHHHHHHHHHCCCc
Confidence 1122333 333344444444444567774
No 56
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=72.27 E-value=75 Score=31.31 Aligned_cols=43 Identities=12% Similarity=0.294 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHhhhhHhhHhhHHh
Q 025643 38 WFGLVSSIFLLILVYLIFS----HSFLVLSMLLWQDFVLHGVSQYQT 80 (250)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lq~~~~~~~sqy~~ 80 (250)
..|.+.+++.-++||=+|. |.-....|+++.+++.+.+.+|-.
T Consensus 156 ~iGv~i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~ 202 (406)
T PF11744_consen 156 VIGVAICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFK 202 (406)
T ss_pred HHHHHHHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566667777788888888 888888999999999999888843
No 57
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.27 E-value=85 Score=30.31 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=64.3
Q ss_pred hhccchhHHHHHHhhhhhcc-HHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH
Q 025643 113 LFMRGPRRFLFRHTFGRLRS-EEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK 191 (250)
Q Consensus 113 lll~gPRRfLyr~TlgRF~S-EEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s 191 (250)
=+-+.-|+|+..+.||-=++ -|+.-+.-+..+....++++.+..|..++.++...-..|+-+-.+.|.++-.+ +-.
T Consensus 99 ~~y~~~K~YV~P~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~---~s~ 175 (300)
T KOG2629|consen 99 AAYRFVKSYVLPRFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQ---LSR 175 (300)
T ss_pred HHHHHHHHHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhh
Confidence 35566788888877777666 45566666777888888999999999999999999999999998888888543 233
Q ss_pred HHHHHHhhHHHH
Q 025643 192 QVYKVETQAADL 203 (250)
Q Consensus 192 svyK~E~~A~gL 203 (250)
.+-|.|+.-..+
T Consensus 176 ~~~k~esei~~I 187 (300)
T KOG2629|consen 176 NIEKLESEINTI 187 (300)
T ss_pred hHHHHHHHHHHH
Confidence 344444443333
No 58
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=70.97 E-value=62 Score=36.05 Aligned_cols=137 Identities=18% Similarity=0.229 Sum_probs=103.9
Q ss_pred HhhccchhHHHHHHh--hhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHH
Q 025643 112 LLFMRGPRRFLFRHT--FGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 189 (250)
Q Consensus 112 llll~gPRRfLyr~T--lgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L 189 (250)
+..+.-.++-||-.- -.+|.|.+..=+-.....+.|+..++..+.-..+++.-..-+|.++..--.+++.--..|...
T Consensus 365 l~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~ 444 (1200)
T KOG0964|consen 365 LAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINET 444 (1200)
T ss_pred HHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 445566666666332 246899999888888999999999999999999999888888888887777776666666666
Q ss_pred HHHHHHHHhhHHHHHHhcccCCc------hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 025643 190 AKQVYKVETQAADLMEGLREIPG------REALKLRAEVASMASLLKRQRAMMDKQIMKISELGV 248 (250)
Q Consensus 190 ~ssvyK~E~~A~gL~d~LR~LPs------reA~~LRsEVAs~AS~lK~qR~aL~k~l~KIs~~GV 248 (250)
-.++......-+.++..+.++-. ||=.+||+.++++-.+|.+.-+.|.....+-.--||
T Consensus 445 ~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi 509 (1200)
T KOG0964|consen 445 KGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGI 509 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh
Confidence 66666666666677777766654 466789999999999999998888877665555555
No 59
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=70.75 E-value=69 Score=28.42 Aligned_cols=65 Identities=26% Similarity=0.331 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 025643 132 SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEG 206 (250)
Q Consensus 132 SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~ 206 (250)
.=|+++...++..+.+++.||.+..+.+.-+..+. .+|+.--.+-+.+++++|.+|.+...|-..
T Consensus 140 ~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~----------~~L~~Le~~W~~~v~kn~eie~a~~~Le~e 204 (221)
T PF05700_consen 140 QLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAG----------EELRYLEQRWKELVSKNLEIEVACEELEQE 204 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999888776543 345555566667778888888877776633
No 60
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.59 E-value=72 Score=27.78 Aligned_cols=79 Identities=11% Similarity=0.151 Sum_probs=45.5
Q ss_pred hhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 025643 129 RLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGL 207 (250)
Q Consensus 129 RF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~L 207 (250)
..+.-..-....+.+++.++..++.++.+.+...++.....+++..-+..|.......++......+....-......|
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 135 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRL 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566667777777777777777777777777777777777666666333333333333333333333333333
No 61
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=69.91 E-value=72 Score=27.49 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=39.6
Q ss_pred hhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHH
Q 025643 118 PRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLER 164 (250)
Q Consensus 118 PRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~er 164 (250)
-+.|+|.-..+.+..=+..+...-.+.+..|+.++.+++|.++.+..
T Consensus 21 l~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~ 67 (154)
T PRK06568 21 IYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKK 67 (154)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998888888888888888888888888888776543
No 62
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=69.48 E-value=9.8 Score=29.51 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHH
Q 025643 33 NPPGFWFGLVSSIFLLILVYLI 54 (250)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~ 54 (250)
.-|.||.++++.|++++..|+.
T Consensus 9 kN~~~w~ali~~i~l~vq~~~~ 30 (84)
T PF04531_consen 9 KNKAFWVALISAILLLVQQVGG 30 (84)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999998876
No 63
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=69.23 E-value=30 Score=27.65 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcccCCch-hHHhHHHHHHHHHHHHHHHHHHH
Q 025643 182 AGNQVQRLAKQVYKVETQAADLMEGLREIPGR-EALKLRAEVASMASLLKRQRAMM 236 (250)
Q Consensus 182 aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsr-eA~~LRsEVAs~AS~lK~qR~aL 236 (250)
....+..+...+-+.+++-..+-..++.+|++ +-.+|+-+++.|--+++.-+..+
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34566666666777788888888899999999 67788888888887777665555
No 64
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.15 E-value=72 Score=29.13 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=37.0
Q ss_pred HHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 025643 122 LFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKE 171 (250)
Q Consensus 122 Lyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~E 171 (250)
.|..+..+...|...+..-+.-++++++.++.|..|-....|.+..-..|
T Consensus 12 ~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~D 61 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQD 61 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777778888888888888888888888887777777666554444
No 65
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=69.11 E-value=96 Score=29.35 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=21.8
Q ss_pred HHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHH
Q 025643 202 DLMEGLREIPGREALKLRAEVASMASLLKRQRAMMD 237 (250)
Q Consensus 202 gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR~aL~ 237 (250)
.....+.+++..+-..++++++....++++.+..++
T Consensus 216 ~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 216 QADFQLAGVAEKELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555666666777766666666665553
No 66
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=69.09 E-value=8.4 Score=31.67 Aligned_cols=95 Identities=24% Similarity=0.244 Sum_probs=43.4
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCch-hHHhHHHHHHH
Q 025643 146 ELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR-EALKLRAEVAS 224 (250)
Q Consensus 146 eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsr-eA~~LRsEVAs 224 (250)
+++..++.+.++.+++.++...+..|+..=+-.+.. +... ...|..++-+..|++.+..+... ++..=..+..+
T Consensus 15 ~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~---e~~~--~~~~~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~~ 89 (165)
T PF01025_consen 15 ELEEELEELEKEIEELKERLLRLQAEFENYRKRLEK---EKEE--AKKYALEKFLKDLLPVLDNLERALEAAKSNEEEES 89 (165)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHCCHHHHHHHHHHHHHHHHHHHCC-SHHCTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHH
Confidence 344444555555555555555555444433322211 1111 12245566667777777666554 22211112234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Q 025643 225 MASLLKRQRAMMDKQIMKISELGV 248 (250)
Q Consensus 225 ~AS~lK~qR~aL~k~l~KIs~~GV 248 (250)
+...++.-...|.+.+ .++||
T Consensus 90 ~~~g~~~~~~~l~~~L---~~~Gv 110 (165)
T PF01025_consen 90 LLEGLEMILKQLEDIL---EKNGV 110 (165)
T ss_dssp HHHHHHHHHHHHHHHH---HTTTE
T ss_pred HHHHHHHHHHHHHHHH---HHCCC
Confidence 4444554444444444 45565
No 67
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=69.05 E-value=66 Score=28.87 Aligned_cols=98 Identities=20% Similarity=0.212 Sum_probs=53.8
Q ss_pred HHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 025643 122 LFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAA 201 (250)
Q Consensus 122 Lyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~ 201 (250)
.|...+.-.+ ..+..+...-..|...++.++.|...+..+.......-..=...+..-.+++......--..|++..
T Consensus 51 ~ye~el~~lr---~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~ 127 (312)
T PF00038_consen 51 MYEEELRELR---RQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ 127 (312)
T ss_dssp HHHHHHHCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhH---HhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence 3444444333 3444444444455555555555555555554444444444444455555666666667777888888
Q ss_pred HHHHhcccCCc---hhHHhHHHHH
Q 025643 202 DLMEGLREIPG---REALKLRAEV 222 (250)
Q Consensus 202 gL~d~LR~LPs---reA~~LRsEV 222 (250)
+|.+.|.-+-. .+-..||+++
T Consensus 128 ~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 128 SLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHHHHHhhhhhhhhhhhhcc
Confidence 88887654433 3455666666
No 68
>PRK14158 heat shock protein GrpE; Provisional
Probab=68.83 E-value=87 Score=28.03 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=49.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHH
Q 025643 151 GELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGREALKLRAEVASMASL 228 (250)
Q Consensus 151 vdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~ 228 (250)
++.++.++.++++.+...++.+.|-.+++-|..+-.++-.. .-|..|+-+..|++.+..|=..=...=-.+..++..-
T Consensus 42 ~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~i~~G 121 (194)
T PRK14158 42 IKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADEESMSAIIEG 121 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCcchHHHHHHH
Confidence 33444444444444444455555555555555555554433 3477889999999888877554211000123344444
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 025643 229 LKRQRAMMDKQIMKISELGV 248 (250)
Q Consensus 229 lK~qR~aL~k~l~KIs~~GV 248 (250)
++-..+.+.+. ..++||
T Consensus 122 v~mi~k~l~~v---Lek~Gv 138 (194)
T PRK14158 122 IRMTLSMLLST---LKKFGV 138 (194)
T ss_pred HHHHHHHHHHH---HHHCCC
Confidence 44444444433 345666
No 69
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.80 E-value=66 Score=35.41 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=12.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHH
Q 025643 214 EALKLRAEVASMASLLKRQRAMMD 237 (250)
Q Consensus 214 eA~~LRsEVAs~AS~lK~qR~aL~ 237 (250)
....+.+++.++..+++..+..++
T Consensus 985 ~ie~le~e~~~l~~~i~~l~kel~ 1008 (1311)
T TIGR00606 985 QLEECEKHQEKINEDMRLMRQDID 1008 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444443
No 70
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=68.67 E-value=99 Score=28.63 Aligned_cols=86 Identities=19% Similarity=0.219 Sum_probs=49.8
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHchHHH---------HHHHHHHHHHHHHHHHHHHhhHHHHHHhccc-CCchhHH
Q 025643 147 LNLSGELMKKESKKLLERAALAEKEMIRGETE---------LKNAGNQVQRLAKQVYKVETQAADLMEGLRE-IPGREAL 216 (250)
Q Consensus 147 Lr~svdl~k~Es~KL~eraa~AE~Em~RGrtk---------Lr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~-LPsreA~ 216 (250)
.+...+-+.++.+++++++..||.++..=+.+ -.....+|..|-...-..|.+-+.+.....+ -| +-.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P--~v~ 245 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNP--QVP 245 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--chH
Confidence 44566677778888888888888776654442 1123344555555555555555544443333 33 344
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 025643 217 KLRAEVASMASLLKRQRA 234 (250)
Q Consensus 217 ~LRsEVAs~AS~lK~qR~ 234 (250)
.+|++++.+-.++++++.
T Consensus 246 ~l~~~i~~l~~~i~~e~~ 263 (362)
T TIGR01010 246 SLQARIKSLRKQIDEQRN 263 (362)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566667666666665544
No 71
>PRK14162 heat shock protein GrpE; Provisional
Probab=68.43 E-value=89 Score=27.98 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=37.0
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCch
Q 025643 143 NVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 143 kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsr 213 (250)
..++++..++.++++.+.+.|+. +|-+.++-|..+-.++-.. .-|.+++-+..|++.+..|=+.
T Consensus 40 e~~~l~~~l~~l~~e~~elkd~~-------lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerA 105 (194)
T PRK14162 40 PVEDLEKEIADLKAKNKDLEDKY-------LRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERA 105 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 34445555555555555555544 4444444444444444322 3467889999999888877544
No 72
>PRK14163 heat shock protein GrpE; Provisional
Probab=68.39 E-value=76 Score=28.98 Aligned_cols=92 Identities=9% Similarity=0.086 Sum_probs=53.3
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHH
Q 025643 144 VNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVA 223 (250)
Q Consensus 144 V~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVA 223 (250)
.++|++.++.+++|++.+.|+..-+..||..=|-. +.++... ..-|..++-+..|++.+..|=..-.. .
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR---~~kE~e~--~~~~a~~~~~~~LLpVlDnLerAl~~------~ 110 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRR---VERDRVT--VKEIAVANLLSELLPVLDDVGRAREH------G 110 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHhhhHhHHHHHHhc------h
Confidence 56677777777778777777665555555433322 2222222 23577899999999988888655221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 025643 224 SMASLLKRQRAMMDKQIMKISELGVS 249 (250)
Q Consensus 224 s~AS~lK~qR~aL~k~l~KIs~~GV~ 249 (250)
.+..-++-.++.|. .-..++||.
T Consensus 111 ~l~~Gv~mi~k~l~---~~L~k~Gv~ 133 (214)
T PRK14163 111 ELVGGFKSVAESLE---TTVAKLGLQ 133 (214)
T ss_pred hHHHHHHHHHHHHH---HHHHHCCCE
Confidence 34444444333333 334466764
No 73
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=67.69 E-value=71 Score=29.26 Aligned_cols=51 Identities=14% Similarity=0.273 Sum_probs=21.9
Q ss_pred HHHHhHHHHHHhHHhhHHHHHH---HHHHHHHHHHHHHchHHHHHHHHHHHHHH
Q 025643 139 RAEKNVNELNLSGELMKKESKK---LLERAALAEKEMIRGETELKNAGNQVQRL 189 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~K---L~eraa~AE~Em~RGrtkLr~aG~qIq~L 189 (250)
.++++++..+...+..+++.++ |.+.=...+.+|..-++++.++..+++..
T Consensus 118 ~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a 171 (346)
T PRK10476 118 SANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQA 171 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333 22333344444444455555555554443
No 74
>PRK14143 heat shock protein GrpE; Provisional
Probab=67.42 E-value=92 Score=28.68 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=38.1
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHhcccCCch
Q 025643 143 NVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLA--KQVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 143 kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~--ssvyK~E~~A~gL~d~LR~LPsr 213 (250)
.+++|+..++.+++|.+.+.++..-+..|| -|-.+-.++-. -.-|.+++-+..|++.+..|=+.
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~Adf-------eN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerA 133 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADF-------DNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERA 133 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 455566666666666666666554444444 44433333322 23377889999999888877554
No 75
>PRK14145 heat shock protein GrpE; Provisional
Probab=67.32 E-value=92 Score=27.99 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=56.6
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHH
Q 025643 150 SGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGREALKLRAEVASMAS 227 (250)
Q Consensus 150 svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS 227 (250)
.++.++.+.+++++++.-....++|-.+++-+..+-.++-.. .-|.+|+-+.+|++.+..|=+.-+. -.+..++..
T Consensus 46 e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~--~~~~~~l~~ 123 (196)
T PRK14145 46 EIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALAS--SGDYNSLKE 123 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhc--cccHHHHHH
Confidence 345555566666666666666667777777776666665544 3477899999999888887655322 123333444
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC
Q 025643 228 LLKRQRAMMDKQIMKISELGVS 249 (250)
Q Consensus 228 ~lK~qR~aL~k~l~KIs~~GV~ 249 (250)
-++-.++.+.+.+ .++||.
T Consensus 124 Gv~mi~k~l~~vL---~k~GVe 142 (196)
T PRK14145 124 GIELIYRQFKKIL---DKFGVK 142 (196)
T ss_pred HHHHHHHHHHHHH---HHCCCE
Confidence 4444444444443 456663
No 76
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=66.89 E-value=83 Score=27.06 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=15.7
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERA 165 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~era 165 (250)
-..|+...+++...+...+.|.+.+.+.+
T Consensus 78 ~~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 78 KQKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444
No 77
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=66.75 E-value=80 Score=26.82 Aligned_cols=71 Identities=11% Similarity=-0.055 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcchhh---HHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHH
Q 025643 89 VKDELVSAREHPAAA---TGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESK 159 (250)
Q Consensus 89 iKegv~~A~ehP~~a---~g~a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~ 159 (250)
+-.++..|.+||++- .-..+...++++--=..|+|.-..+-+..=+.-+..--.+.++.+..++.+..|.+
T Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e 80 (167)
T PRK08475 7 LLGFYAFAASLGATEQYDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDAL 80 (167)
T ss_pred HHHHHHHHcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777643 22223344445555566888777766655444444444444444444444444433
No 78
>PRK09039 hypothetical protein; Validated
Probab=66.74 E-value=1.2e+02 Score=28.83 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=26.0
Q ss_pred CchhHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhhhhHhhHhhHH
Q 025643 35 PGFWFGLVSSIFLLILVYLIF--SHSFLVLSMLLWQDFVLHGVSQYQ 79 (250)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lq~~~~~~~sqy~ 79 (250)
|||-=.|-.-+..+|+|..|| ...||-+.+...+.=++....|..
T Consensus 17 pg~vd~~~~ll~~~~f~l~~f~~~q~fLs~~i~~~~~eL~~L~~qIa 63 (343)
T PRK09039 17 PGFVDALSTLLLVIMFLLTVFVVAQFFLSREISGKDSALDRLNSQIA 63 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555444333333334444444 467888888888777776666543
No 79
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=66.41 E-value=2.3e+02 Score=31.89 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=58.6
Q ss_pred chhHHHHHHhhhhhccHHHH--HHHHHHhHHHHHHhHHhhHHHHHHHH-------------------------HHHHHHH
Q 025643 117 GPRRFLFRHTFGRLRSEEAM--FVRAEKNVNELNLSGELMKKESKKLL-------------------------ERAALAE 169 (250)
Q Consensus 117 gPRRfLyr~TlgRF~SEEal--l~~Ae~kV~eLr~svdl~k~Es~KL~-------------------------eraa~AE 169 (250)
....||+.+... .+++.+ +..+-.++++++..++.++.+.+.|. .+...+.
T Consensus 205 ~l~~~l~~~l~~--l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~ 282 (1353)
T TIGR02680 205 VLSDALTEALPP--LDDDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLS 282 (1353)
T ss_pred HHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666655554 333332 23333455555555555555555442 2222223
Q ss_pred HHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHH
Q 025643 170 KEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDK 238 (250)
Q Consensus 170 ~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR~aL~k 238 (250)
+++..-+.++.++..++..+-...-..|++...+...+.++-.-+|.+...|-.....++++....+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~ 351 (1353)
T TIGR02680 283 RDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAAD 351 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444445555555666666666666666666665555544444444444444433
No 80
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.16 E-value=21 Score=33.35 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=49.3
Q ss_pred cchhhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHH
Q 025643 99 HPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETE 178 (250)
Q Consensus 99 hP~~a~g~a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtk 178 (250)
+|.....+-.++|-|...--=-+-|+.+...-.--..-+..++++.++.+..++..+.+++++.++...-+.+|...-.+
T Consensus 185 ~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e 264 (344)
T PF12777_consen 185 NPEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKE 264 (344)
T ss_dssp SHHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555666666665555556677777666666666666666666666666666666666666666666665544433
No 81
>PRK02224 chromosome segregation protein; Provisional
Probab=66.04 E-value=1.7e+02 Score=30.25 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcccC
Q 025643 183 GNQVQRLAKQVYKVETQAADLMEGLREI 210 (250)
Q Consensus 183 G~qIq~L~ssvyK~E~~A~gL~d~LR~L 210 (250)
..+|..+-..+...+.....|...+...
T Consensus 278 ~~~i~~~~~~~~~le~e~~~l~~~l~~~ 305 (880)
T PRK02224 278 AEEVRDLRERLEELEEERDDLLAEAGLD 305 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444444444444444444444444444
No 82
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.36 E-value=1.3e+02 Score=31.08 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=20.6
Q ss_pred HHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025643 196 VETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKIS 244 (250)
Q Consensus 196 ~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR~aL~k~l~KIs 244 (250)
++++.+.+.+.+.++|..|. |...+..+++..|...+.-+.|.-
T Consensus 351 L~~~~~~l~~~~~~~p~~e~-----~~~~L~R~~~~~~~lY~~lL~r~~ 394 (726)
T PRK09841 351 LEQERKRLNKRVSAMPSTQQ-----EVLRLSRDVEAGRAVYLQLLNRQQ 394 (726)
T ss_pred HHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666665532 233344444444444444444433
No 83
>PRK14151 heat shock protein GrpE; Provisional
Probab=65.34 E-value=85 Score=27.51 Aligned_cols=96 Identities=11% Similarity=0.198 Sum_probs=51.7
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCch-hHHhHHH
Q 025643 144 VNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR-EALKLRA 220 (250)
Q Consensus 144 V~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsr-eA~~LRs 220 (250)
+..++..++.+++|.+.+.|+ +.|-..++-|-.+..++-.. .-|..|+-+..|++.+..|=+. ++..--.
T Consensus 22 ~~~l~~~i~~le~e~~el~d~-------~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~ 94 (176)
T PRK14151 22 GDDLTARVQELEEQLAAAKDQ-------SLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADD 94 (176)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccc
Confidence 344555555555555555554 44445555555555444433 3467889999999888877554 2221111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 025643 221 -EVASMASLLKRQRAMMDKQIMKISELGVS 249 (250)
Q Consensus 221 -EVAs~AS~lK~qR~aL~k~l~KIs~~GV~ 249 (250)
.+.++..-++-..+.+.+. ..++||.
T Consensus 95 ~~~~~~~~Gv~mi~k~l~~~---L~k~Gv~ 121 (176)
T PRK14151 95 EAIKPMREGVELTLKMFQDT---LKRYQLE 121 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HHHCCCE
Confidence 1334444444444444443 3466763
No 84
>PRK14156 heat shock protein GrpE; Provisional
Probab=64.94 E-value=77 Score=27.99 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHH
Q 025643 156 KESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ--VYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQR 233 (250)
Q Consensus 156 ~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ss--vyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR 233 (250)
++++++++++..-.+.+.|-..++-|-.+-.++-... .|..++-+.+|++.+..|=+.-.. ...-.++..-+ .
T Consensus 34 ~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~--~~~~~~l~~Gv---~ 108 (177)
T PRK14156 34 SELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAV--EGLTDDVKKGL---E 108 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhC--cccchhHHHHH---H
Confidence 3444555555555566666666666666666665544 678899999999988888554211 11112233333 3
Q ss_pred HHHHHHHHHHhhcCCC
Q 025643 234 AMMDKQIMKISELGVS 249 (250)
Q Consensus 234 ~aL~k~l~KIs~~GV~ 249 (250)
.+.++-+.-..++||.
T Consensus 109 mi~k~l~~~L~~~GV~ 124 (177)
T PRK14156 109 MVQESLIQALKEEGVE 124 (177)
T ss_pred HHHHHHHHHHHHCCCe
Confidence 4444444445577874
No 85
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=64.84 E-value=81 Score=26.20 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=36.6
Q ss_pred HHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHH
Q 025643 108 LTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKL 161 (250)
Q Consensus 108 ~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL 161 (250)
++..++++--=.+|+|.-..+-+..=+..+...-...++.+..++.+..|.++.
T Consensus 15 ~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~ 68 (164)
T PRK14471 15 TILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERL 68 (164)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555578999999988887777777666666666666666666665543
No 86
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=64.57 E-value=39 Score=31.67 Aligned_cols=96 Identities=20% Similarity=0.264 Sum_probs=59.4
Q ss_pred chhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHH
Q 025643 117 GPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV 196 (250)
Q Consensus 117 gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~ 196 (250)
.|.+---...-..+.--++.+..++.++.+++..++.++++.+........-|.++.....+|..|.+=|.+|.+.--.=
T Consensus 217 ~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW 296 (344)
T PF12777_consen 217 EPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERW 296 (344)
T ss_dssp CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhH
Confidence 45444444444445555566666677777777777777777666666666666677777777777777777666655555
Q ss_pred HhhHHHHHHhcccCCc
Q 025643 197 ETQAADLMEGLREIPG 212 (250)
Q Consensus 197 E~~A~gL~d~LR~LPs 212 (250)
+.+...+...+..||+
T Consensus 297 ~~~~~~l~~~~~~l~G 312 (344)
T PF12777_consen 297 SEQIEELEEQLKNLVG 312 (344)
T ss_dssp HCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHH
Confidence 5555555555555544
No 87
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=64.44 E-value=1.4e+02 Score=28.72 Aligned_cols=41 Identities=7% Similarity=0.084 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHH
Q 025643 154 MKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVY 194 (250)
Q Consensus 154 ~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvy 194 (250)
++.+...++.+.+.....|...+-+++...+||..+-..+-
T Consensus 252 l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 252 LDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKE 292 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 33445555566666666677777777777777776655543
No 88
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=64.27 E-value=2.5e+02 Score=31.59 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=59.1
Q ss_pred chhHHH--HHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHH
Q 025643 117 GPRRFL--FRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVY 194 (250)
Q Consensus 117 gPRRfL--yr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvy 194 (250)
.-+.-| |+..+..++.--.-+..|.+...+.+..++.+..+....++.+..++++...-..++......+..++..
T Consensus 848 ~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~ee-- 925 (1353)
T TIGR02680 848 AVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDE-- 925 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 335556 7777777766666677777777777777777777777777777777777777666666666665544332
Q ss_pred HHHhhHHHHHHhcccCCch
Q 025643 195 KVETQAADLMEGLREIPGR 213 (250)
Q Consensus 195 K~E~~A~gL~d~LR~LPsr 213 (250)
++.+-..+...|..+|+.
T Consensus 926 -l~a~L~e~r~rL~~l~~e 943 (1353)
T TIGR02680 926 -IRARLAETRAALASGGRE 943 (1353)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 333333344444444443
No 89
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=64.22 E-value=7.1 Score=31.60 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=21.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhH
Q 025643 32 SNPPGFWFGLVSSIFLLILVYLIFSHSF 59 (250)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (250)
|---|||.||..-+.++.++.+..|+|-
T Consensus 37 sIVI~FWv~LA~FV~~lF~iL~~ms~sg 64 (90)
T PF15183_consen 37 SIVIAFWVSLAAFVVFLFLILLYMSWSG 64 (90)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHhccC
Confidence 4456999999988888877777777764
No 90
>PRK03918 chromosome segregation protein; Provisional
Probab=64.11 E-value=1.8e+02 Score=29.87 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=11.1
Q ss_pred CCCcchhhhhHHH
Q 025643 2 GRGSSTLCDSIQR 14 (250)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (250)
|.|-||+-|+|.-
T Consensus 33 G~GKStil~ai~~ 45 (880)
T PRK03918 33 GSGKSSILEAILV 45 (880)
T ss_pred CCCHHHHHHHHHH
Confidence 7899999998865
No 91
>PRK14155 heat shock protein GrpE; Provisional
Probab=63.49 E-value=85 Score=28.36 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=54.4
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHhcccCCchhHH-hH-
Q 025643 143 NVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLA--KQVYKVETQAADLMEGLREIPGREAL-KL- 218 (250)
Q Consensus 143 kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~--ssvyK~E~~A~gL~d~LR~LPsreA~-~L- 218 (250)
..+++.+.++.+++|.+.+.++..-+..||. |-.+..++-. ..-|.+|+-+..|++.+..|=..-.. .-
T Consensus 14 ~~~~l~~~l~~le~e~~elkd~~lR~~Aefe-------N~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~ 86 (208)
T PRK14155 14 EADDAAQEIEALKAEVAALKDQALRYAAEAE-------NTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKD 86 (208)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhccccc
Confidence 3456666666666666666665555554444 4444443333 24577899999999988887554221 10
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 025643 219 --RAEVASMASLLKRQRAMMDKQIMKISELGVS 249 (250)
Q Consensus 219 --RsEVAs~AS~lK~qR~aL~k~l~KIs~~GV~ 249 (250)
-.++.++..-++-.++.+.+.+ .++||.
T Consensus 87 ~~~~~~~~i~~Gvemi~k~~~~~L---~k~GV~ 116 (208)
T PRK14155 87 SADPAVKNFIIGVEMTEKELLGAF---ERNGLK 116 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH---HHCCCc
Confidence 0234445555554444444444 467763
No 92
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.79 E-value=2.1e+02 Score=30.28 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=10.3
Q ss_pred CCCcchhhhhHHHH
Q 025643 2 GRGSSTLCDSIQRL 15 (250)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (250)
|.|.||+...|--.
T Consensus 332 g~GKSTlLK~i~~~ 345 (771)
T TIGR01069 332 TGGKTVTLKTLGLL 345 (771)
T ss_pred CCCchHHHHHHHHH
Confidence 56888888877655
No 93
>PRK12704 phosphodiesterase; Provisional
Probab=62.73 E-value=1.8e+02 Score=29.42 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025643 218 LRAEVASMASLLKRQRAMMDKQIMKISE 245 (250)
Q Consensus 218 LRsEVAs~AS~lK~qR~aL~k~l~KIs~ 245 (250)
...++..+-.++.+.+....+.|.+|++
T Consensus 122 re~eLe~~~~~~~~~~~~~~~~l~~~a~ 149 (520)
T PRK12704 122 KQQELEKKEEELEELIEEQLQELERISG 149 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444444444444445555555554
No 94
>PRK01156 chromosome segregation protein; Provisional
Probab=62.73 E-value=2e+02 Score=29.97 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=34.0
Q ss_pred hhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHH---HHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 025643 127 FGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLE---RAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADL 203 (250)
Q Consensus 127 lgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~e---raa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL 203 (250)
+.++...+.-+.....++++++..++.++++...+.. .....++++.+=..++.....++..+.+.+-..+.+...+
T Consensus 628 ~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l 707 (895)
T PRK01156 628 ANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEIL 707 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444455555555444444443322 1222333444444444444444444444444444444444
Q ss_pred HH
Q 025643 204 ME 205 (250)
Q Consensus 204 ~d 205 (250)
.+
T Consensus 708 ~~ 709 (895)
T PRK01156 708 RT 709 (895)
T ss_pred Hh
Confidence 44
No 95
>PRK10698 phage shock protein PspA; Provisional
Probab=62.53 E-value=1.1e+02 Score=27.28 Aligned_cols=91 Identities=23% Similarity=0.267 Sum_probs=50.4
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHH--------HHHHHHHHHHHHHHHHhhHHHHHHhcc
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKN--------AGNQVQRLAKQVYKVETQAADLMEGLR 208 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~--------aG~qIq~L~ssvyK~E~~A~gL~d~LR 208 (250)
+.++-+.-+.+...++....+..+++++|..| +..|+-.|-. ...++..+-...-..+.++..|.+.++
T Consensus 47 lA~~~A~~k~~er~~~~~~~~~~~~e~kA~~A---l~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~ 123 (222)
T PRK10698 47 SARALAEKKQLTRRIEQAEAQQVEWQEKAELA---LRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIG 123 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556677777788888888888877665 4556655542 234444444444444444444444444
Q ss_pred -------cCCch-hHHhHHHHHHHHHHHHH
Q 025643 209 -------EIPGR-EALKLRAEVASMASLLK 230 (250)
Q Consensus 209 -------~LPsr-eA~~LRsEVAs~AS~lK 230 (250)
+.-.+ ..+.-|.++|...-.+.
T Consensus 124 ~L~~ki~eak~k~~~L~aR~~~A~a~~~~~ 153 (222)
T PRK10698 124 ELENKLSETRARQQALMLRHQAASSSRDVR 153 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 45555555555444433
No 96
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=62.48 E-value=66 Score=24.38 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=57.1
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccc
Q 025643 140 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLRE 209 (250)
Q Consensus 140 Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~ 209 (250)
.++.+.|=-..|..+..|-++|-..-..-..-.+.=|.+....-++|..+-..+-+.|.....|.+.|+.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777777888889999999888777778888888888888888888888888888888888777653
No 97
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=62.23 E-value=2.6e+02 Score=31.19 Aligned_cols=168 Identities=16% Similarity=0.232 Sum_probs=102.8
Q ss_pred hhhHHHHHHHHHhhhhHhhHhhHHhHHHHHHHhH--HHHHHHHhhcchhhHHHHHHHhHhhccchhHHHHHHhhhhhccH
Q 025643 56 SHSFLVLSMLLWQDFVLHGVSQYQTYEDAFFSKV--KDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSE 133 (250)
Q Consensus 56 ~~~~~~~~~~~lq~~~~~~~sqy~~yEd~fF~ki--Kegv~~A~ehP~~a~g~a~~agllll~gPRRfLyr~TlgRF~SE 133 (250)
+|--+.-..-.-|.|+-+..++-.+.-+..+.|- ++.|..-.++-..+- -+|+ ||...-..
T Consensus 35 s~edlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstq------------etri--yRrdv~ll--- 97 (1265)
T KOG0976|consen 35 SHEDLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQ------------ETRI--YRRDVNLL--- 97 (1265)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHH------------HHHH--HHHHHHHh---
Confidence 4444444455566776666666555555555542 444443333333221 2232 33322222
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHhccc
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQV----YKVETQAADLMEGLRE 209 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssv----yK~E~~A~gL~d~LR~ 209 (250)
|+-+..-+...-+|+.+...+..|.++|++..+.+|++.+...++|-++...+.-++... -.|=+.-.+|.|.=-
T Consensus 98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~- 176 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNE- 176 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh-
Confidence 445566677888999999999999999999999999998888888777666555554332 233333333333222
Q ss_pred CCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025643 210 IPGREALKLRAEVASMASLLKRQRAMMDKQIMKISE 245 (250)
Q Consensus 210 LPsreA~~LRsEVAs~AS~lK~qR~aL~k~l~KIs~ 245 (250)
+--.|+.|.-...++...+.+++..-+.|.-|
T Consensus 177 ----~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 177 ----ELNEFNMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred ----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568888888888888888888776666543
No 98
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=61.66 E-value=2.2e+02 Score=31.10 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=23.5
Q ss_pred hhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025643 128 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEM 172 (250)
Q Consensus 128 gRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em 172 (250)
.+...-+..+..++..++.++..+..+..+.+++......++.++
T Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1163)
T COG1196 674 EELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666666665555555555555554444444433
No 99
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=61.61 E-value=1.5e+02 Score=28.17 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=62.0
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHH
Q 025643 140 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLR 219 (250)
Q Consensus 140 Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LR 219 (250)
|.=+|.=||+..+... |.++..+....+|.|.....-+|.....++..+-...-+.|...+.+.+.+
T Consensus 164 a~vkV~WLR~~L~Ei~-Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i------------ 230 (269)
T PF05278_consen 164 AKVKVDWLRSKLEEIL-EAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERI------------ 230 (269)
T ss_pred cCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 3345555666665544 445555666677777777777888888888888888888888888777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 220 AEVASMASLLKRQRAMMDKQIMKI 243 (250)
Q Consensus 220 sEVAs~AS~lK~qR~aL~k~l~KI 243 (250)
.|+.+-.++++.+|.-+.+.+..+
T Consensus 231 ~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 231 TEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777777777766554
No 100
>PRK11519 tyrosine kinase; Provisional
Probab=61.51 E-value=2e+02 Score=29.66 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=24.6
Q ss_pred HHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025643 192 QVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKISE 245 (250)
Q Consensus 192 svyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR~aL~k~l~KIs~ 245 (250)
+.-.++++...+.+.+.++|..|. |...+..++...+...+.-+.|.-+
T Consensus 347 ~~~~L~~~~~~l~~~~~~lp~~e~-----~~~~L~Re~~~~~~lY~~lL~r~~e 395 (719)
T PRK11519 347 KRKALEDEKAKLNGRVTAMPKTQQ-----EIVRLTRDVESGQQVYMQLLNKQQE 395 (719)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555566666666776542 3334444444444444444444433
No 101
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=61.21 E-value=2e+02 Score=29.49 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=45.0
Q ss_pred hhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHh----h--HHHHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Q 025643 113 LFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGEL----M--KKESKKLLERAALAEKEMIRGETELKNAGNQV 186 (250)
Q Consensus 113 lll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl----~--k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qI 186 (250)
..+|.||..|=+.+ +++. ...+.+++.+++.++..+. + +.+.+-..+|...-++.=...-.++.++-.++
T Consensus 146 ~~lp~~~eil~~~~---L~T~-~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~ 221 (555)
T TIGR03545 146 SQLPDPRALLKGED---LKTV-ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEF 221 (555)
T ss_pred ccCCCHHHHhccCC---CCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 57899999998877 6776 5566666666666555553 3 34445555555554443223444455555555
Q ss_pred HHHHHHH
Q 025643 187 QRLAKQV 193 (250)
Q Consensus 187 q~L~ssv 193 (250)
..|-+.+
T Consensus 222 d~lk~e~ 228 (555)
T TIGR03545 222 DKLKKEG 228 (555)
T ss_pred HHHHHHH
Confidence 5554444
No 102
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=60.91 E-value=1.1e+02 Score=26.18 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025643 133 EEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEM 172 (250)
Q Consensus 133 EEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em 172 (250)
++.-.+..+.++++|++.++..++|.+.|.+++.--++||
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344455566666666666666666666666665555554
No 103
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=60.62 E-value=2.8 Score=34.52 Aligned_cols=101 Identities=12% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREAL 216 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~ 216 (250)
...|...+.+--..++.++..+.++.+.+..-..+...-...+.++.++|...-.++-+++..+-.|+|.|+.+-.....
T Consensus 5 a~~A~~~a~~v~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~ 84 (138)
T PF06009_consen 5 ADEANETAANVLDRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSEN 84 (138)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34455555666666667777777777776666666666666677899999999999999999999999999888555321
Q ss_pred --hHHHHHHHHHHHHHHHHHHHH
Q 025643 217 --KLRAEVASMASLLKRQRAMMD 237 (250)
Q Consensus 217 --~LRsEVAs~AS~lK~qR~aL~ 237 (250)
.++..+..+--...+-|.+.+
T Consensus 85 ~~~ls~nI~~IrelI~qAR~~An 107 (138)
T PF06009_consen 85 NSNLSRNISRIRELIAQARDAAN 107 (138)
T ss_dssp -----------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Confidence 155555555555555555443
No 104
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=60.58 E-value=2.5e+02 Score=31.56 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=15.2
Q ss_pred CCCCcchhhhhHHHHhhhhhc
Q 025643 1 MGRGSSTLCDSIQRLCHSLSS 21 (250)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (250)
+||--||=-+.|+++|--++-
T Consensus 153 ~grvVStKk~dl~~vv~~f~I 173 (1074)
T KOG0250|consen 153 NGRVVSTKKEDLDTVVDHFNI 173 (1074)
T ss_pred cCccccccHHHHHHHHHHhCc
Confidence 466778888888998865543
No 105
>PRK14153 heat shock protein GrpE; Provisional
Probab=60.57 E-value=1.3e+02 Score=27.08 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=37.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCch
Q 025643 152 ELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 152 dl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsr 213 (250)
+.+.+|..+|++++..-++.++|-..+.-+..+-.++-.. .-|..++-+..|++.+..|=..
T Consensus 36 ~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerA 99 (194)
T PRK14153 36 STADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERA 99 (194)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 3344444444444444455556666666665555554433 4577889999999888887554
No 106
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=59.32 E-value=1.4e+02 Score=27.13 Aligned_cols=23 Identities=17% Similarity=0.599 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHH
Q 025643 38 WFGLVSSIFLLILVYLIFSHSFL 60 (250)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~ 60 (250)
|+-++.-+.-++++++++.+-+|
T Consensus 5 ~~t~~~qiInFlILv~lL~~fl~ 27 (250)
T PRK14474 5 WFTVVAQIINFLILVYLLRRFLY 27 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554443333333334444333
No 107
>PRK14150 heat shock protein GrpE; Provisional
Probab=59.28 E-value=1.3e+02 Score=26.68 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=31.8
Q ss_pred HHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCch
Q 025643 169 EKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 169 E~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsr 213 (250)
...+.|-.++.-+..+..++-.. ..|.+++-+.+|++.+..|=..
T Consensus 58 kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerA 104 (193)
T PRK14150 58 RDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERA 104 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 35566666666666666655543 4577889999999998888654
No 108
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=58.91 E-value=1.1e+02 Score=25.74 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=10.1
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHH
Q 025643 142 KNVNELNLSGELMKKESKKLLERAAL 167 (250)
Q Consensus 142 ~kV~eLr~svdl~k~Es~KL~eraa~ 167 (250)
..+..|...+..+..|+.++++++..
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444443333333
No 109
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=58.74 E-value=1.6e+02 Score=27.55 Aligned_cols=94 Identities=21% Similarity=0.310 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----hc
Q 025643 132 SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLME----GL 207 (250)
Q Consensus 132 SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d----~L 207 (250)
|...+-+-+-++.++|+.-.+++-++..-++++--.=|++.+.=.++|.+|.+..+- +.++...+..+ .|
T Consensus 33 s~~~q~~l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~------~~~k~~~dF~~~Lq~~L 106 (230)
T PF03904_consen 33 SQKTQMSLENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFID------KTEKVHNDFQDILQDEL 106 (230)
T ss_pred cHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 445555555668899999999999999999999999999999999999999988763 34555555443 33
Q ss_pred ccC--------CchhHHhHHHHHHHHHHHHHH
Q 025643 208 REI--------PGREALKLRAEVASMASLLKR 231 (250)
Q Consensus 208 R~L--------PsreA~~LRsEVAs~AS~lK~ 231 (250)
..+ -.++-.++|.|--+|..++|+
T Consensus 107 k~V~tde~k~~~~~ei~k~r~e~~~ml~evK~ 138 (230)
T PF03904_consen 107 KDVDTDELKNIAQNEIKKVREENKSMLQEVKQ 138 (230)
T ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 233344445555555555554
No 110
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=58.50 E-value=31 Score=29.68 Aligned_cols=58 Identities=19% Similarity=0.101 Sum_probs=40.8
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH-----chHHHHHHHHHHHHHHHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMI-----RGETELKNAGNQVQRLAKQVY 194 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~-----RGrtkLr~aG~qIq~L~ssvy 194 (250)
-...+++++.++...+..+.|.++|++++..+|++-- .-+-.+-.+-=||-=+..++.
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~~a~~~lQIaI~Lasit 130 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRFDLAVALLQIAIVLASIT 130 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999999999988887643 233444455555555555543
No 111
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=58.38 E-value=1.4e+02 Score=26.75 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 025643 156 KESKKLLERAALAEKEMIR 174 (250)
Q Consensus 156 ~Es~KL~eraa~AE~Em~R 174 (250)
++.+..+.+...|++++.|
T Consensus 115 ~~~~~a~~~l~~a~~~~~r 133 (334)
T TIGR00998 115 IKLEQAREKLLQAELDLRR 133 (334)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 3333333344444444444
No 112
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=58.31 E-value=2.1e+02 Score=31.93 Aligned_cols=99 Identities=21% Similarity=0.198 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHH-------HHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhh-----
Q 025643 132 SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAA-------LAEKEMIRGETELKNAGNQVQRLAKQVYKVETQ----- 199 (250)
Q Consensus 132 SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa-------~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~----- 199 (250)
.||.-++.....+++|...++.+..+.+.+.+... .=-++...=..+|.+.-.++.++..-.-++..+
T Consensus 438 ~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e 517 (1041)
T KOG0243|consen 438 QEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEE 517 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555777777788888887777777776666554 222333333344444444444443333222222
Q ss_pred -HHHHHHhcccCCchhHHhHHHHHHHHHHHHH
Q 025643 200 -AADLMEGLREIPGREALKLRAEVASMASLLK 230 (250)
Q Consensus 200 -A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK 230 (250)
..+-++.+..--.+.|..||.....+..++.
T Consensus 518 ~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s 549 (1041)
T KOG0243|consen 518 EIISQQEKSEEKLVDRATKLRRSLEESQDDLS 549 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222223348888888888777776
No 113
>PRK14146 heat shock protein GrpE; Provisional
Probab=57.72 E-value=1.2e+02 Score=27.39 Aligned_cols=62 Identities=10% Similarity=0.107 Sum_probs=41.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCch
Q 025643 152 ELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 152 dl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsr 213 (250)
..++.++..|.+.+.-..+.+.|-.+++-|..+..++-.. .-|.+|+-+.+|+..+..|=+.
T Consensus 57 ~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerA 120 (215)
T PRK14146 57 TSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERV 120 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 3344555555555555566667777777776666665544 4577899999999988887654
No 114
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=57.37 E-value=36 Score=31.79 Aligned_cols=44 Identities=20% Similarity=0.431 Sum_probs=32.6
Q ss_pred cccccccccccCCCCchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 025643 21 SFFPTQLFHLSSNPPGFWFGLVSSIFLLILVYLIFSHSFLVLSMLLWQDF 70 (250)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~ 70 (250)
-|||+--.....++|+.|+.++ ++.-+++.|--++.+-++.+.+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~p~~a~~~~~~~~~~~ 90 (366)
T PRK10245 47 MFLPIASTLVSHPPPGWWWLLL------VGWAFVWPHLAWQIASRAVDPL 90 (366)
T ss_pred hHHHHHHHHHhcccchHHHHHH------HHHHHHhHHHHHHHHHhCCChh
Confidence 4788877777888888887653 3445678888888888887776
No 115
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=57.16 E-value=76 Score=23.37 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHhhHhhHHhHHHHHHHhHHHHHHH
Q 025643 37 FWFGLVSSIFLLILVYLIFSHSFLVLSMLLWQDFVLHGVSQYQTYEDAFFSKVKDELVS 95 (250)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~sqy~~yEd~fF~kiKegv~~ 95 (250)
||+|++.....-..+.+.|.---=.++-+.+.+....++.+...+-+..-.++|+-+.-
T Consensus 1 F~~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 59 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKEKVKEKAEE 59 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67787777777677766666555566777777776666666555444444445554443
No 116
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=56.81 E-value=93 Score=32.37 Aligned_cols=81 Identities=27% Similarity=0.251 Sum_probs=65.6
Q ss_pred hhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHH-------HHHh
Q 025643 126 TFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVY-------KVET 198 (250)
Q Consensus 126 TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvy-------K~E~ 198 (250)
.+|.|. |.-|-+--+--+...++-..+..|..|.+|-++-||.+|.-=-.||+-|.+||..+++.-- +.|+
T Consensus 21 ~l~~g~--e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~ 98 (604)
T KOG3564|consen 21 ILGEGN--EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLET 98 (604)
T ss_pred HhcCcc--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 466776 5556677777888888999999999999999999999999999999999999999887643 5566
Q ss_pred hHHHHHHhcc
Q 025643 199 QAADLMEGLR 208 (250)
Q Consensus 199 ~A~gL~d~LR 208 (250)
+-..+.|-|+
T Consensus 99 ~i~~i~d~l~ 108 (604)
T KOG3564|consen 99 QIQLIKDMLK 108 (604)
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 117
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=56.77 E-value=1.1e+02 Score=25.31 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=32.2
Q ss_pred HHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHH
Q 025643 109 TAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKL 161 (250)
Q Consensus 109 ~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL 161 (250)
...++++--=++|||.-..+-+..=+..+...-...++.+..++.+..|.++.
T Consensus 16 inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~ 68 (164)
T PRK14473 16 INFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAE 68 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555567899988887776666665555555555555555555554443
No 118
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.68 E-value=3.2e+02 Score=30.37 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 025643 178 ELKNAGNQVQRLAKQ 192 (250)
Q Consensus 178 kLr~aG~qIq~L~ss 192 (250)
+++..-.+|..|-..
T Consensus 1029 ~l~el~~eI~~l~~~ 1043 (1311)
T TIGR00606 1029 ELKEVEEELKQHLKE 1043 (1311)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444333
No 119
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=56.07 E-value=84 Score=23.52 Aligned_cols=86 Identities=20% Similarity=0.231 Sum_probs=42.9
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhH
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREA 215 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA 215 (250)
++.....+.++....+..+..-...+.+.+..++.+...--.+|++. +|..-..|++.|...=...-
T Consensus 8 ~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~-------------L~~~e~~ll~~l~~~~~~~~ 74 (127)
T smart00502 8 LLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNA-------------LNKRKKQLLEDLEEQKENKL 74 (127)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555444433333332 33444455555555444444
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 025643 216 LKLRAEVASMASLLKRQRA 234 (250)
Q Consensus 216 ~~LRsEVAs~AS~lK~qR~ 234 (250)
..|..+...+-..+.+-+.
T Consensus 75 ~~l~~q~~~l~~~l~~l~~ 93 (127)
T smart00502 75 KVLEQQLESLTQKQEKLSH 93 (127)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444433
No 120
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=55.99 E-value=1.4e+02 Score=26.20 Aligned_cols=72 Identities=22% Similarity=0.318 Sum_probs=42.5
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHH--------HHHHHHHHHHHHHHhhHHHHHHhcc
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAG--------NQVQRLAKQVYKVETQAADLMEGLR 208 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG--------~qIq~L~ssvyK~E~~A~gL~d~LR 208 (250)
+..+-+.-+.+...++.+..+.++++++|..| ++.|+-.|-..+ .++.++-.++-..+.++..|...|+
T Consensus 47 lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~A---l~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~ 123 (219)
T TIGR02977 47 SARTIADKKELERRVSRLEAQVADWQEKAELA---LSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIA 123 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566667777777777777776655 556666654333 5555555555555555555555555
Q ss_pred cCC
Q 025643 209 EIP 211 (250)
Q Consensus 209 ~LP 211 (250)
+|-
T Consensus 124 ~L~ 126 (219)
T TIGR02977 124 KLQ 126 (219)
T ss_pred HHH
Confidence 543
No 121
>PRK10698 phage shock protein PspA; Provisional
Probab=55.76 E-value=1.5e+02 Score=26.47 Aligned_cols=102 Identities=16% Similarity=0.206 Sum_probs=61.5
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchh
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGRE 214 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsre 214 (250)
+++.+++-=.+-+++.+..+..+..++...+ -+-.+.-+...+++...-..+-+-|.+|.--++.=++==-++
T Consensus 17 ~~ldkaEDP~k~l~q~i~em~~~l~~~r~al-------A~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~ 89 (222)
T PRK10698 17 ALLEKAEDPQKLVRLMIQEMEDTLVEVRSTS-------ARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARA 89 (222)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455555555566666666666555553222 222334455566677777777777888777766444444567
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 215 ALKLRAEVASMASLLKRQRAMMDKQIMKI 243 (250)
Q Consensus 215 A~~LRsEVAs~AS~lK~qR~aL~k~l~KI 243 (250)
|+.-+.+++..+..++.+....+..+.++
T Consensus 90 AL~~K~~~~~~~~~l~~~~~~~~~~~~~L 118 (222)
T PRK10698 90 ALIEKQKLTDLIATLEHEVTLVDETLARM 118 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766666555443
No 122
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=55.03 E-value=2.4e+02 Score=31.12 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=53.3
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccC
Q 025643 142 KNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI 210 (250)
Q Consensus 142 ~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~L 210 (250)
....++...+..+..+.+.+.++......++++=+.+|...-+.+...+....+.-+.-..++..|..+
T Consensus 816 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~ 884 (1201)
T PF12128_consen 816 EEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKLAEL 884 (1201)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 345667777777788888888888888888888888888888888888777777777777777777655
No 123
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=54.72 E-value=1.3e+02 Score=25.34 Aligned_cols=40 Identities=13% Similarity=-0.066 Sum_probs=18.4
Q ss_pred HhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhH
Q 025643 112 LLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSG 151 (250)
Q Consensus 112 llll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~sv 151 (250)
++++--=..|+|+....-+..=+.-+...-.+.++.+..+
T Consensus 30 lIl~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea 69 (174)
T PRK07352 30 AIVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQA 69 (174)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344568887765555443333333333333333333
No 124
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=54.71 E-value=2.5e+02 Score=28.69 Aligned_cols=44 Identities=5% Similarity=0.142 Sum_probs=22.5
Q ss_pred HHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025643 196 VETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKIS 244 (250)
Q Consensus 196 ~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR~aL~k~l~KIs 244 (250)
++.+...+.+.+.++|..+ .|...+..++...|...+.-+.|.-
T Consensus 357 L~~~l~~~~~~~~~~~~~~-----~e~~~L~Re~~~~~~~Y~~ll~r~~ 400 (754)
T TIGR01005 357 LVSDVNQLKAASAQAGEQQ-----VDLDALQRDAAAKRQLYESYLTNYR 400 (754)
T ss_pred HHHHHHHHHHHHHhCcHhH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666553 3444444555555555554444433
No 125
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=54.65 E-value=2e+02 Score=30.93 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=38.7
Q ss_pred cchhhhhHHHH-hhhhhcccccccccccCCCCchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 025643 5 SSTLCDSIQRL-CHSLSSFFPTQLFHLSSNPPGFWFGLVSSIFLLILVYLIFSHSFLVLSMLLWQDF 70 (250)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~ 70 (250)
-+|+-++|+-+ |+.+..+.|.-+||.+ =|+|.+--+-.+++|..|..-.|.---++..+..
T Consensus 621 f~~f~~s~~t~~~~~~G~~~~~~i~~~~-----r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~ev 682 (798)
T KOG3599|consen 621 FRTFVASIVTLLRYILGDFCPAEIFHAN-----RILGPLLFLTYVFVVSFILLNLFVAIINDTYGEV 682 (798)
T ss_pred hHHHHHHHHHHHHHHhccCCccccccCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46788888865 5777778888888864 3667665555555555555555554444444444
No 126
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=54.58 E-value=1.2e+02 Score=24.86 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=23.3
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHH
Q 025643 143 NVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLA 190 (250)
Q Consensus 143 kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ 190 (250)
.++.|+..++....|..-.+.+...++.++..-..+++....+++++-
T Consensus 74 ~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 74 DVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444445555555555555555555543
No 127
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=53.80 E-value=11 Score=30.00 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 025643 35 PGFWFGLVSSIFLLILVYLIF 55 (250)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~ 55 (250)
.-.|+|+++.+.+++++|+|+
T Consensus 62 ~iili~lls~v~IlVily~Iy 82 (101)
T PF06024_consen 62 NIILISLLSFVCILVILYAIY 82 (101)
T ss_pred cchHHHHHHHHHHHHHHhhhe
Confidence 457999999999999999986
No 128
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=53.72 E-value=2.7e+02 Score=28.72 Aligned_cols=99 Identities=21% Similarity=0.307 Sum_probs=54.4
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHc----hH------------------------HHHHHHHHHHHHHH
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIR----GE------------------------TELKNAGNQVQRLA 190 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~R----Gr------------------------tkLr~aG~qIq~L~ 190 (250)
....++..|+..++.+..|..+|++.....|.++.+ |. ..|..-..+.+.|.
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~ 579 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLL 579 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888999999998888888888766 43 22333334444445
Q ss_pred HHHHHHHhhHHHHHHhc----ccCCchhHHhHHHHHHHHHHHHHHHHHHHH
Q 025643 191 KQVYKVETQAADLMEGL----REIPGREALKLRAEVASMASLLKRQRAMMD 237 (250)
Q Consensus 191 ssvyK~E~~A~gL~d~L----R~LPsreA~~LRsEVAs~AS~lK~qR~aL~ 237 (250)
..+-+.|.....-.+.. ...+.+|-..|++||++.--...+-+.+..
T Consensus 580 ~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~ 630 (722)
T PF05557_consen 580 ARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFK 630 (722)
T ss_dssp HHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544443222211111 123345667788888876544444444443
No 129
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=53.47 E-value=2.5e+02 Score=28.31 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025643 217 KLRAEVASMASLLKRQRAMMDKQIMKISE 245 (250)
Q Consensus 217 ~LRsEVAs~AS~lK~qR~aL~k~l~KIs~ 245 (250)
+...++..+-.+....+....+.|.+|++
T Consensus 115 ~re~eLee~~~e~~~~~~~~~~~le~~a~ 143 (514)
T TIGR03319 115 NKEKNLDEKEEELEELIAEQREELERISG 143 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33445555555555555555556666654
No 130
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=53.27 E-value=1.3e+02 Score=24.87 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=35.6
Q ss_pred HHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHH
Q 025643 109 TAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLE 163 (250)
Q Consensus 109 ~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~e 163 (250)
...++++---++|||.-..+-+..=+..+..--...++.+..++.+++|.+....
T Consensus 15 i~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~ 69 (141)
T PRK08476 15 VVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILK 69 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566789998887777666666666666666666666666666555443
No 131
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=53.14 E-value=14 Score=33.08 Aligned_cols=20 Identities=45% Similarity=1.140 Sum_probs=15.8
Q ss_pred CCchhHHHHHHHHHHHHHHH
Q 025643 34 PPGFWFGLVSSIFLLILVYL 53 (250)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~ 53 (250)
-||.|.|++.+++|+.+.|.
T Consensus 256 tpgi~mglii~~~ll~IL~~ 275 (282)
T PF05827_consen 256 TPGIWMGLIISLVLLSILYV 275 (282)
T ss_pred eccHHHHHHHHHHHHHHHHH
Confidence 48999999998887765554
No 132
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=52.94 E-value=1.8e+02 Score=29.98 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=41.0
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHH--HHHHHHHHHHHHHHHHHHHhhHHHH
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETE--LKNAGNQVQRLAKQVYKVETQAADL 203 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtk--Lr~aG~qIq~L~ssvyK~E~~A~gL 203 (250)
..+.|.+..+++.+-+.+++..+.+++..||.++..=+.+ +-+...+-+....++-..|.|-..+
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l 323 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNEL 323 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777888888889999999999999888765543 1222233334444444445444443
No 133
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=52.40 E-value=1.9e+02 Score=26.46 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=43.0
Q ss_pred HchHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHH
Q 025643 173 IRGETELKNAGNQVQRLAKQVYKVETQ----AADLMEGLREIPGREALKLRAEVASMASLLKRQRA 234 (250)
Q Consensus 173 ~RGrtkLr~aG~qIq~L~ssvyK~E~~----A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR~ 234 (250)
++=.-++..+.++|.+| ..+|+++-+ ....+|.. ..+|..||.|+.+||..+.+-=.
T Consensus 133 ~~Y~eqm~~aa~~l~~L-N~~Ye~QL~~as~q~~~~~~i----~~na~~fkeQ~~kLa~NL~sLN~ 193 (202)
T TIGR03513 133 KKYIEQMSSLAANMEGL-NTIYEAQLKGASSHADANNEI----AINSSSLKEEMEKMAANLTSLNE 193 (202)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888776 567887766 66666665 78999999999999998875433
No 134
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=52.17 E-value=1.1e+02 Score=32.11 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=37.2
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHH
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGN 184 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~ 184 (250)
.++++|++||..|..+.++++-++...+..|.++++-+.+.+++.+
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~ 128 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRH 128 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888888888877776654
No 135
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.06 E-value=1.9e+02 Score=27.43 Aligned_cols=73 Identities=11% Similarity=0.219 Sum_probs=54.7
Q ss_pred chhHHHHHHhhhh-hccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHH
Q 025643 117 GPRRFLFRHTFGR-LRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 189 (250)
Q Consensus 117 gPRRfLyr~TlgR-F~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L 189 (250)
.|+.-+|-.+++- .+.-+.-++..+.++..+...++.+-+...++.....-.++|+..-..+++..-++|.-+
T Consensus 19 ~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 19 AFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred hhcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777776 777777788777777777777777777777777777777777777777777777777665
No 136
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=51.74 E-value=94 Score=29.98 Aligned_cols=71 Identities=15% Similarity=0.287 Sum_probs=49.4
Q ss_pred hhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 025643 128 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAD 202 (250)
Q Consensus 128 gRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~g 202 (250)
..|.+|+.| +..+.-+..++..+..+.+|+....+.-+.+- ..|+..|.+|...|+.|..++-.+-.+|..
T Consensus 12 ~lfp~e~SL-~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~---~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~ 82 (383)
T PF04100_consen 12 ELFPDEQSL-SNLDELIAKLRKEIRELDEEIKELVREQSSSG---QDAEEDLEEAQEAIQELFEKISEIKSKAEE 82 (383)
T ss_pred HhCCChHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888886 66777777777777777777665544333211 357778888888888888888777766654
No 137
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=51.50 E-value=1.2e+02 Score=24.28 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=41.1
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHH
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 189 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L 189 (250)
+|.-|+-.++=|=.+-+-+......++++...+.++..+-+.+++....+++.+
T Consensus 60 lfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 60 LFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777788888888888888888877777777777766665
No 138
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=51.36 E-value=3e+02 Score=28.58 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=39.2
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHH
Q 025643 150 SGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVAS 224 (250)
Q Consensus 150 svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs 224 (250)
.++.++...++++|.....-.|-.|=+..|..+.+|+.....-=-+.+++...|+.+|.-+-.-+-.+++.+-+.
T Consensus 156 e~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~ 230 (546)
T KOG0977|consen 156 EINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 333344444444444444444444445555555555555555555666777777776665554444444444433
No 139
>PRK14147 heat shock protein GrpE; Provisional
Probab=51.34 E-value=1.7e+02 Score=25.58 Aligned_cols=60 Identities=15% Similarity=0.260 Sum_probs=36.7
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCch
Q 025643 147 LNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 147 Lr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsr 213 (250)
+...++.+++|+..+. ..+.|-.+++.|-.+..++-.. .-|..|+-+..|++.+..|=+.
T Consensus 23 l~~~l~~l~~e~~elk-------d~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerA 84 (172)
T PRK14147 23 LKAEVESLRSEIALVK-------ADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAG 84 (172)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4444555555555554 4455555555555555555443 3466788899999888877554
No 140
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=50.70 E-value=1.2e+02 Score=29.55 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=48.1
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHH---HHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCc
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEK---EMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPG 212 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~---Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPs 212 (250)
-+...+++..++...+|.+++|..++-+....+.+ +...=..+.++-.++|+.+......+|.+-..++..|--+|.
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~ 108 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPH 108 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 34456667777777777777777777766654111 111111123444556777777777778777777777777665
Q ss_pred hh
Q 025643 213 RE 214 (250)
Q Consensus 213 re 214 (250)
.+
T Consensus 109 ~~ 110 (425)
T PRK05431 109 DS 110 (425)
T ss_pred cc
Confidence 53
No 141
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=50.67 E-value=3.3e+02 Score=28.85 Aligned_cols=17 Identities=18% Similarity=0.546 Sum_probs=11.8
Q ss_pred HHHhhHHHHHHhcccCC
Q 025643 195 KVETQAADLMEGLREIP 211 (250)
Q Consensus 195 K~E~~A~gL~d~LR~LP 211 (250)
+..++|..++..|++.+
T Consensus 581 ~a~~~~~~~i~~lk~~~ 597 (782)
T PRK00409 581 EAKKEADEIIKELRQLQ 597 (782)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45567778888887653
No 142
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=50.65 E-value=73 Score=25.55 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=13.8
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHH
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLE 163 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~e 163 (250)
.-+...+++.+++++.-+.++.|.+.|.+
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33444444444455555555555554443
No 143
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=50.54 E-value=83 Score=25.98 Aligned_cols=30 Identities=37% Similarity=0.479 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 025643 221 EVASMASLLKRQRAMMDKQIMKISELGVSV 250 (250)
Q Consensus 221 EVAs~AS~lK~qR~aL~k~l~KIs~~GV~V 250 (250)
++..+-++++.....++..+..|-+.||.|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~v 73 (120)
T PF09969_consen 44 EVNGLEAELEELEARLRELIDEIEELGVEV 73 (120)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHcCcEE
Confidence 555566666777777888888999999865
No 144
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=50.47 E-value=1.3e+02 Score=24.06 Aligned_cols=56 Identities=7% Similarity=0.009 Sum_probs=29.6
Q ss_pred HHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHH
Q 025643 104 TGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESK 159 (250)
Q Consensus 104 ~g~a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~ 159 (250)
.+.-++..++++--=.+|||.-..+-+..=++.+...-.+.++++...+.+..|.+
T Consensus 8 ~~~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e 63 (140)
T PRK07353 8 LPLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYE 63 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555678888776665554444444444444444444444444433
No 145
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=50.47 E-value=1.9e+02 Score=25.89 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=30.2
Q ss_pred HHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHH
Q 025643 108 LTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKK 160 (250)
Q Consensus 108 ~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~K 160 (250)
+...++++--=++|+|.-..+-+..=+.-+...-...++.+..++.++.|.+.
T Consensus 12 iInFlil~~lL~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 64 (246)
T TIGR03321 12 LINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEE 64 (246)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666789998877776655555554444444444444444444433
No 146
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=49.89 E-value=3.4e+02 Score=28.67 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=17.9
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 025643 143 NVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKN 181 (250)
Q Consensus 143 kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~ 181 (250)
.+++.+..++.+++..++|++.....+..+..=+.+|.+
T Consensus 247 ~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~ 285 (806)
T PF05478_consen 247 AMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNN 285 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555544444444444333333333
No 147
>PF15456 Uds1: Up-regulated During Septation
Probab=49.65 E-value=60 Score=27.07 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=33.8
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHH
Q 025643 149 LSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLA 190 (250)
Q Consensus 149 ~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ 190 (250)
..||.+|+|.+.|..|.-....-+. =.+|+|+|...|.++-
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~ 62 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLY 62 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 4588889999999999988888777 7888888888877763
No 148
>PRK14149 heat shock protein GrpE; Provisional
Probab=49.37 E-value=1.5e+02 Score=26.57 Aligned_cols=90 Identities=19% Similarity=0.226 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHH
Q 025643 158 SKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAM 235 (250)
Q Consensus 158 s~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR~a 235 (250)
...|++.+.-.++.+.|-.+++-|-.+-.++-.. .-|..|+-+..|++.+..|=..=.. -.+-.+..+-++.-..+
T Consensus 45 ~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~--~~~~~~~~~l~~Gv~mi 122 (191)
T PRK14149 45 KEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKS--AAEVDKESALTKGLELT 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc--cccccchHHHHHHHHHH
Confidence 3334444444445555555555555555555443 3467888899999888887544111 00111122334444455
Q ss_pred HHHHHHHHhhcCCC
Q 025643 236 MDKQIMKISELGVS 249 (250)
Q Consensus 236 L~k~l~KIs~~GV~ 249 (250)
+++-+.-..++||.
T Consensus 123 ~k~l~~vL~k~GV~ 136 (191)
T PRK14149 123 MEKLHEVLARHGIE 136 (191)
T ss_pred HHHHHHHHHHCCCE
Confidence 55555555678874
No 149
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=49.28 E-value=1.3e+02 Score=23.66 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=47.8
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGL 207 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~L 207 (250)
|.|=..+..++.+|...++.++..++.|.++- ++++.=..++-+-..++..|...+|..+.-...|=..+
T Consensus 27 e~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~----~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 27 ENMNKATSLKYKKMKDIAAGLEKNLEDLNQKY----EELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778888889888888888888887765 34444455566666666666666666666555554443
No 150
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=49.26 E-value=2.2e+02 Score=27.71 Aligned_cols=84 Identities=13% Similarity=0.161 Sum_probs=53.6
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHH
Q 025643 148 NLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMAS 227 (250)
Q Consensus 148 r~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS 227 (250)
.+..+.+++|-+.|+|.... + ..|+.+-.+-...-.+++-+-.++-..|.+.|..++.....+=++.+.++-.
T Consensus 3 ~eEW~eL~~efq~Lqethr~----Y---~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~ 75 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRS----Y---KQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEE 75 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Confidence 34455666666666665532 2 2355555555556666777777777788888888866544466677777777
Q ss_pred HHHHHHHHHHH
Q 025643 228 LLKRQRAMMDK 238 (250)
Q Consensus 228 ~lK~qR~aL~k 238 (250)
+++..++.+.+
T Consensus 76 ~Ik~r~~~l~D 86 (330)
T PF07851_consen 76 DIKERRCQLFD 86 (330)
T ss_pred HHHHHHhhHHH
Confidence 77777766653
No 151
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=49.24 E-value=2.5e+02 Score=27.06 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=18.8
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEK 170 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~ 170 (250)
..++..+.+++.++.++.|.+.++......++
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555566666666666666666555554433
No 152
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.76 E-value=2.8e+02 Score=29.38 Aligned_cols=14 Identities=14% Similarity=0.491 Sum_probs=9.1
Q ss_pred HHhhHHHHHHhccc
Q 025643 196 VETQAADLMEGLRE 209 (250)
Q Consensus 196 ~E~~A~gL~d~LR~ 209 (250)
..+++..+++.|++
T Consensus 577 a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 577 LKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHh
Confidence 34566777777765
No 153
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.74 E-value=3.7e+02 Score=30.83 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHH--HHHHHHHH
Q 025643 163 ERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQ--RAMMDKQI 240 (250)
Q Consensus 163 eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~q--R~aL~k~l 240 (250)
.++...+++.+++.+.|......|.++=...-..|+.-..+....+.+-+. --++|.+|..+-|.+... |+-+.+.|
T Consensus 528 ~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~-~~~~rqrveE~ks~~~~~~s~~kVl~al 606 (1293)
T KOG0996|consen 528 GKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQ-LNKLRQRVEEAKSSLSSSRSRNKVLDAL 606 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 444444555555555555555555554444444444444444444444332 235566666666654443 45566788
Q ss_pred HHHhhcC
Q 025643 241 MKISELG 247 (250)
Q Consensus 241 ~KIs~~G 247 (250)
++.-+.|
T Consensus 607 ~r~kesG 613 (1293)
T KOG0996|consen 607 MRLKESG 613 (1293)
T ss_pred HHHHHcC
Confidence 8888877
No 154
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=48.04 E-value=2.6e+02 Score=26.93 Aligned_cols=26 Identities=27% Similarity=0.458 Sum_probs=13.3
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHh
Q 025643 31 SSNPPGFWFGLVSSIFLLILVYLIFS 56 (250)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (250)
..+||.|-..++..+++++++.++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~WA 38 (457)
T TIGR01000 13 QKRYHNFSTLVIVPIFLLLVFLVLFS 38 (457)
T ss_pred HhcCCCcchhHHHHHHHHHHHHHHHH
Confidence 35666665444444444444444443
No 155
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.65 E-value=3.4e+02 Score=28.10 Aligned_cols=106 Identities=16% Similarity=0.209 Sum_probs=66.1
Q ss_pred HHHHHhHHHHHHhHHhhHH----HHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCc-
Q 025643 138 VRAEKNVNELNLSGELMKK----ESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPG- 212 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~----Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPs- 212 (250)
.--..++++|.+-.|..+. +-.+|.+..-.-|-|=.+ -.++++.-..++++...+-+-|--+..|+..|..+|.
T Consensus 303 ~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~d 381 (521)
T KOG1937|consen 303 AELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDD 381 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCch
Confidence 3334445555555554432 222333444444445555 6889999999999999999999999999999999998
Q ss_pred --hhHH------------hHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 025643 213 --REAL------------KLRAEVASMAS---LLKRQRAMMDKQIMKIS 244 (250)
Q Consensus 213 --reA~------------~LRsEVAs~AS---~lK~qR~aL~k~l~KIs 244 (250)
|-+. +.++++-.|.+ ++.+|.+++..++.+=+
T Consensus 382 v~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsf 430 (521)
T KOG1937|consen 382 VQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSF 430 (521)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3332 34444444433 34555555555555443
No 156
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=47.44 E-value=2.6e+02 Score=29.95 Aligned_cols=74 Identities=23% Similarity=0.254 Sum_probs=55.2
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccC
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI 210 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~L 210 (250)
|.-++.|...|..|+..++.++.+...+.+ ..+.+..+-++.+-+-..++.++.++.-..+.+...|.++|+.+
T Consensus 358 e~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~---~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l 431 (717)
T PF09730_consen 358 ECKYKVAVSEVIQLKAELKALKSKYNELEE---RYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRAL 431 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 566778888888888888888888887777 44556666677777777777777776666666777777777765
No 157
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=47.33 E-value=2.8e+02 Score=28.00 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHchHHH
Q 025643 155 KKESKKLLERAALAEKEMIRGETE 178 (250)
Q Consensus 155 k~Es~KL~eraa~AE~Em~RGrtk 178 (250)
.+++++.++++..-|+.+.+-...
T Consensus 75 e~rL~qrE~rL~qRee~Lekr~e~ 98 (514)
T TIGR03319 75 RNELQRLERRLLQREETLDRKMES 98 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433333333
No 158
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=46.84 E-value=1.5e+02 Score=27.39 Aligned_cols=26 Identities=4% Similarity=0.088 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025643 219 RAEVASMASLLKRQRAMMDKQIMKIS 244 (250)
Q Consensus 219 RsEVAs~AS~lK~qR~aL~k~l~KIs 244 (250)
..|...+..++.-.+..++..+.+.-
T Consensus 277 ~~~~~~L~re~~~a~~~y~~~l~r~~ 302 (362)
T TIGR01010 277 TADYQRLVLQNELAQQQLKAALTSLQ 302 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665555543
No 159
>PRK11519 tyrosine kinase; Provisional
Probab=46.75 E-value=2.9e+02 Score=28.52 Aligned_cols=65 Identities=12% Similarity=0.176 Sum_probs=41.0
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHH--HHHHHHHHHHHHHHHHHHHhhHHHH
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETE--LKNAGNQVQRLAKQVYKVETQAADL 203 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtk--Lr~aG~qIq~L~ssvyK~E~~A~gL 203 (250)
..+.+..+.+++++-++++.+++.+++..||.+++.=+.+ +-+...+.+....++-..+.+-..+
T Consensus 257 ~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l 323 (719)
T PRK11519 257 NIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNEL 323 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777888888889999999998888887665442 1123344444444444555444444
No 160
>PF14635 HHH_7: Helix-hairpin-helix motif ; PDB: 3PSI_A 3PSF_A.
Probab=46.68 E-value=8.3 Score=31.47 Aligned_cols=56 Identities=29% Similarity=0.390 Sum_probs=35.9
Q ss_pred HHHHHHHhhhhHhhHhhHHhHHHHHHHhH-HHHH--HHHhhcchhhHHHHHHHhHhhccchhHH
Q 025643 61 VLSMLLWQDFVLHGVSQYQTYEDAFFSKV-KDEL--VSAREHPAAATGVALTAGLLFMRGPRRF 121 (250)
Q Consensus 61 ~~~~~~lq~~~~~~~sqy~~yEd~fF~ki-Kegv--~~A~ehP~~a~g~a~~agllll~gPRRf 121 (250)
...+.-+|+++|. ..-+.++|..+...+ .-|| +.|.+||+.+...=-+.|+ |||--
T Consensus 5 sl~lHplQ~~l~~-d~L~~~le~~~vd~vN~vGVDIN~a~~~~~~~~~LqfV~GL----GPRKA 63 (104)
T PF14635_consen 5 SLKLHPLQDLLPK-DKLLEALERAFVDVVNQVGVDINRAVSHPHLANLLQFVCGL----GPRKA 63 (104)
T ss_dssp TS---TTGGGS-H-HHHHHHHHHHHHHHHHHH-EEHHHHCT-HHHHGGGGGSTT------HHHH
T ss_pred eeecCcchhhCCH-HHHHHHHHHHHHHHHHhhCccHHHHhcChHHHhhHhHhcCC----ChHHH
Confidence 3456678999885 445778999999988 5665 4899999998866555554 78753
No 161
>PRK14144 heat shock protein GrpE; Provisional
Probab=46.67 E-value=2.2e+02 Score=25.69 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=35.4
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCch
Q 025643 145 NELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 145 ~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsr 213 (250)
.++...++.+++|.+.+.|+..-+..|| -|..+-.++-.. .-|.+++-+..|++.+..|=..
T Consensus 48 ~~l~~~i~~le~e~~elkdk~lR~~Aef-------eN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerA 111 (199)
T PRK14144 48 TALEEQLTLAEQKAHENWEKSVRALAEL-------ENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQA 111 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 3444455555555555555554444444 444444433332 3467888899998888777554
No 162
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=46.67 E-value=1.3e+02 Score=22.97 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=36.4
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQ 187 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq 187 (250)
.+|..=|.+|..+=.+|++++.|.+.|.+.-.... ....+|+..-.+++
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~----~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELK----EENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHH
Confidence 36777889999999999999999999988755444 44556666665555
No 163
>PRK03918 chromosome segregation protein; Provisional
Probab=46.67 E-value=3.4e+02 Score=27.86 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=26.6
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHH-----HHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 025643 141 EKNVNELNLSGELMKKESKKLLERAALAE-----KEMIRGETELKNAGNQVQRLAKQVYKVETQAADLME 205 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL~eraa~AE-----~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d 205 (250)
+...++++..++.++++++.+.++....+ +++..=+.++.+.-.++..+-..+...+.+-.-+..
T Consensus 625 ~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~ 694 (880)
T PRK03918 625 EEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKK 694 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443 333333333444334444443333333333333333
No 164
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=46.16 E-value=2.1e+02 Score=25.25 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=27.5
Q ss_pred hhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHH
Q 025643 113 LFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKK 160 (250)
Q Consensus 113 lll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~K 160 (250)
+++--=..|+|.-..+-+..=+.-+..--.+.++.+..++.+..|.++
T Consensus 60 Ilv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~ 107 (205)
T PRK06231 60 ILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQ 107 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444678887777766655555555555555555555555444443
No 165
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=46.08 E-value=2.7e+02 Score=26.45 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=16.5
Q ss_pred HHHhcccCCchhHHhHHHHHHHH
Q 025643 203 LMEGLREIPGREALKLRAEVASM 225 (250)
Q Consensus 203 L~d~LR~LPsreA~~LRsEVAs~ 225 (250)
..+.-|..-..|..+|++++..+
T Consensus 261 ~~~~~r~~t~~Ei~~Lk~~~~~L 283 (312)
T smart00787 261 KLEQCRGFTFKEIEKLKEQLKLL 283 (312)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Confidence 56666777777888888877544
No 166
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=45.48 E-value=3.7e+02 Score=27.95 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=28.7
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHH
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGET 177 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrt 177 (250)
+..+..++++-++|.+....+++|...|.++....+.++..-+-
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~e 185 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEE 185 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777777777777777777776666666555544333
No 167
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=45.07 E-value=1.4e+02 Score=22.78 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=51.6
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 198 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~ 198 (250)
+..-+.+++.|=.-.+.++.|=..|.++.+..+.|=..=..|.-.|...|..+|++.-.+|.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 34557888888888899999999999998888888877788888899999999988766663
No 168
>COG3455 Type VI protein secretion system component VasF [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.04 E-value=62 Score=30.42 Aligned_cols=69 Identities=29% Similarity=0.312 Sum_probs=51.4
Q ss_pred CCCCcchhhhhHHHHhhhhhcccccccccccCCCCc-------------hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 025643 1 MGRGSSTLCDSIQRLCHSLSSFFPTQLFHLSSNPPG-------------FWFGLVSSIFLLILVYLIFSHSFLVLSMLLW 67 (250)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 67 (250)
|.+|-+.+-+-++||-|-++++-++.-.-+|.+--| .|+.+...+.++.+.|+.++|++=+++=+-+
T Consensus 173 ~~~g~~~le~lr~~L~~~l~~~r~~~~~~lsp~~~g~~~~r~~l~~~~p~w~~~~~~~~~lv~~~~g~~~~L~~~~~~~l 252 (262)
T COG3455 173 ISRGASELEKLRRRLYAQLSQLRGDAPPALSPHWKGAAARRYRLRRRLPVWVVALGAVALLVVAYLGLSLSLDSQSQDLL 252 (262)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhccCCCcccCcccccccccccccceeccHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 567889999999999999999987766655543222 3777666777888889999998877765544
Q ss_pred hh
Q 025643 68 QD 69 (250)
Q Consensus 68 q~ 69 (250)
+.
T Consensus 253 ~~ 254 (262)
T COG3455 253 AQ 254 (262)
T ss_pred HH
Confidence 43
No 169
>PRK09793 methyl-accepting protein IV; Provisional
Probab=44.84 E-value=3.1e+02 Score=26.81 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=44.1
Q ss_pred hccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 025643 130 LRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVE 197 (250)
Q Consensus 130 F~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E 197 (250)
.....+-+......++++..+++......+...+.+..+.+...+|.....+....++.+..++-+|.
T Consensus 291 ~e~qa~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~I~ 358 (533)
T PRK09793 291 TEQQAASLAQTAASMEQLTATVGQNADNARQASELAKNAATTAQAGGVQVSTMTHTMQEIATSSQKIG 358 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555666777777777777777777777777777777777777666666666655554443
No 170
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=44.68 E-value=33 Score=25.42 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=23.2
Q ss_pred HHHHHHHHHhHH---HHHHhHHhhHHHHHHHHHH
Q 025643 134 EAMFVRAEKNVN---ELNLSGELMKKESKKLLER 164 (250)
Q Consensus 134 Eall~~Ae~kV~---eLr~svdl~k~Es~KL~er 164 (250)
.++...|++..+ +++..++.++.|+.||+.|
T Consensus 20 K~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 20 KALAAQAEQQLAEAGDIAAALEKLKAEIAKLEAR 53 (53)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHhcC
Confidence 467777777665 6778888888888888754
No 171
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=44.67 E-value=2.6e+02 Score=25.83 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=58.7
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHhcc
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV-------ETQAADLMEGLR 208 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~-------E~~A~gL~d~LR 208 (250)
+--.|++++++--.+.--..++++...+|+-+||.....=--.++.-++.+.+|..+.=+. |.+-.-|.|.|+
T Consensus 75 iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLk 154 (205)
T KOG1003|consen 75 IAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLK 154 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 4456788889988888899999999999999999998888888888888888887665544 444555556555
Q ss_pred c
Q 025643 209 E 209 (250)
Q Consensus 209 ~ 209 (250)
+
T Consensus 155 E 155 (205)
T KOG1003|consen 155 E 155 (205)
T ss_pred h
Confidence 4
No 172
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=44.53 E-value=2.2e+02 Score=30.02 Aligned_cols=28 Identities=0% Similarity=0.026 Sum_probs=17.2
Q ss_pred cCCchhHHhHHHHHHHHHHHHHHHHHHH
Q 025643 209 EIPGREALKLRAEVASMASLLKRQRAMM 236 (250)
Q Consensus 209 ~LPsreA~~LRsEVAs~AS~lK~qR~aL 236 (250)
.||..|=...++-...++.+.+...+.+
T Consensus 681 ~L~~~Q~~~I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 681 VLSESQKRTIKEILKQQGEEIDELVKQI 708 (717)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666665555443
No 173
>PRK00708 sec-independent translocase; Provisional
Probab=44.13 E-value=2.6e+02 Score=25.66 Aligned_cols=20 Identities=25% Similarity=0.654 Sum_probs=11.7
Q ss_pred hHhhccchhHHH-HHHhhhhh
Q 025643 111 GLLFMRGPRRFL-FRHTFGRL 130 (250)
Q Consensus 111 gllll~gPRRfL-yr~TlgRF 130 (250)
-.|++=||.++= .=+++|++
T Consensus 15 VaLvV~GPkrLP~~~R~lGk~ 35 (209)
T PRK00708 15 VLIVVVGPKDLPPMLRAFGKM 35 (209)
T ss_pred HHHhhcCchHHHHHHHHHHHH
Confidence 344666788763 34556655
No 174
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=44.10 E-value=2.3e+02 Score=25.18 Aligned_cols=7 Identities=14% Similarity=0.140 Sum_probs=3.4
Q ss_pred cCCchhH
Q 025643 209 EIPGREA 215 (250)
Q Consensus 209 ~LPsreA 215 (250)
++|-...
T Consensus 121 d~Pf~~~ 127 (251)
T PF11932_consen 121 DLPFLLE 127 (251)
T ss_pred CCCCChH
Confidence 4565533
No 175
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.72 E-value=5.4e+02 Score=29.25 Aligned_cols=154 Identities=18% Similarity=0.261 Sum_probs=93.8
Q ss_pred hhHHhHHHHHHHh------HHHHHHHHhhcch--hhH-------HHHHHHhHhhccchhHHHHHHhhhhhccH----HHH
Q 025643 76 SQYQTYEDAFFSK------VKDELVSAREHPA--AAT-------GVALTAGLLFMRGPRRFLFRHTFGRLRSE----EAM 136 (250)
Q Consensus 76 sqy~~yEd~fF~k------iKegv~~A~ehP~--~a~-------g~a~~agllll~gPRRfLyr~TlgRF~SE----Eal 136 (250)
.+|...=.-+|++ +..|+.+|+.|.. ||. -.+.++|+.=-|+.|==|..| ..+|++| +.-
T Consensus 608 p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~-~~~~~~~~~~l~~~ 686 (1200)
T KOG0964|consen 608 PQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLELLKN-VNESRSELKELQES 686 (1200)
T ss_pred hhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHHHHhh-hHHHHHHHHHHHHH
Confidence 3444444455666 6889999999943 332 235577777777777666554 3566666 234
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHH--------------HHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLL--------------ERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAD 202 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~--------------eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~g 202 (250)
++-|...+++..+.||.+.++.||.+ +.+...-.|..+=...+.--+++|..+--+..+.|.+...
T Consensus 687 L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~ 766 (1200)
T KOG0964|consen 687 LDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNY 766 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 55577777777777777777777765 3333333444444444555566666666677777777766
Q ss_pred HHHhcc-----cCCch---hHHhHHHHHHHHHHHHH
Q 025643 203 LMEGLR-----EIPGR---EALKLRAEVASMASLLK 230 (250)
Q Consensus 203 L~d~LR-----~LPsr---eA~~LRsEVAs~AS~lK 230 (250)
+...|. +|... ++..|+-||..+...+.
T Consensus 767 ~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~ 802 (1200)
T KOG0964|consen 767 FESELGSELFSQLTPEELERLSKLNKEINKLSVKLR 802 (1200)
T ss_pred HHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHH
Confidence 665553 23222 45566666666665554
No 176
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.71 E-value=2.5e+02 Score=25.48 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHH
Q 025643 131 RSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAA 166 (250)
Q Consensus 131 ~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa 166 (250)
++.+..|..++++.+++.....-+.+|+++-.|...
T Consensus 7 ~T~D~~fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~ 42 (225)
T cd07590 7 KTVDRELEREVQKLQQLESTTKKLYKDMKKYIEAVL 42 (225)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777766543
No 177
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=43.70 E-value=87 Score=29.25 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=40.8
Q ss_pred hhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH
Q 025643 102 AATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAE 169 (250)
Q Consensus 102 ~a~g~a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE 169 (250)
++...|.+.|+++=-+| =.+.+.+.-+.++.+||+..+.++.|.+.++.+...++
T Consensus 12 ~aVFlALavGI~lG~~~-------------l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d 66 (308)
T PF11382_consen 12 AAVFLALAVGIVLGSGP-------------LQPNLIDSLEDQFDSLREENDELRAELDALQAQLNAAD 66 (308)
T ss_pred HHHHHHHHHHHHhcchh-------------hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666676665444 45678888889999999999999999888877765544
No 178
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=43.50 E-value=53 Score=27.41 Aligned_cols=66 Identities=30% Similarity=0.346 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhhHhhHhhHHhHHHHHHHhHHHHHHHHhhcc------hhhHHHHHHHhHhhccc---hhHHHHHHhhh
Q 025643 59 FLVLSMLLWQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHP------AAATGVALTAGLLFMRG---PRRFLFRHTFG 128 (250)
Q Consensus 59 ~~~~~~~~lq~~~~~~~sqy~~yEd~fF~kiKegv~~A~ehP------~~a~g~a~~agllll~g---PRRfLyr~Tlg 128 (250)
+++...+..++.++...+.|...|+.+ ++.+..-++.| .+.+++++.+|+++-|+ ++|++|=-.+|
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~~~~~~llP~~~~I~vaglaGsIlar~r~~~~R~~~P~~~g 127 (158)
T PF09769_consen 53 FLQPYYSWAQDELNTVKSKYYNAERSV----TSTIASLHPPPEELLPGLGYIGVAGLAGSILARRRGIFKRFLYPLAFG 127 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhcCCCcccCcceeeeehhhhheeeeeccCcchhhhHHHHHHH
Confidence 455556666666666677777666644 44444444444 24556777778777762 55666644433
No 179
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=43.46 E-value=1.8e+02 Score=27.03 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Q 025643 155 KKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLR 208 (250)
Q Consensus 155 k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR 208 (250)
+..++++.+++...+++.....++|++.=++|+..-..+-.+-+.+..|-+.|+
T Consensus 12 ~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 12 KEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALK 65 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444433333333333333334444444443
No 180
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=43.33 E-value=1.4e+02 Score=27.48 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=24.1
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 025643 140 AEKNVNELNLSGELMKKESKKLLERAALAEKE 171 (250)
Q Consensus 140 Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~E 171 (250)
|++.|..++..+.+++-|+.+.++|+..|-..
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~K 33 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQK 33 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888887777776543
No 181
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=43.28 E-value=1.5e+02 Score=22.80 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=32.5
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHH----HHHHHHHHHHHhhHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQV----QRLAKQVYKVETQAADLM 204 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qI----q~L~ssvyK~E~~A~gL~ 204 (250)
+-..+.+..++...+|.+++|...+-+....+-..= .-...|++.+++| ..+-...-.+|.+-..++
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666677777777777666655544332210 1234444444444 334444444444433333
No 182
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=42.96 E-value=2.4e+02 Score=25.01 Aligned_cols=28 Identities=7% Similarity=0.049 Sum_probs=15.1
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLER 164 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~er 164 (250)
-..|+...+++++.+...+.|.+.+.+.
T Consensus 100 k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~ 127 (204)
T PRK09174 100 KQEADAAVAAYEQELAQARAKAHSIAQA 127 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 183
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=42.90 E-value=1.1e+02 Score=27.83 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHc----hHHHHHHHHHHHHHHHH
Q 025643 154 MKKESKKLLERAALAEKEMIR----GETELKNAGNQVQRLAK 191 (250)
Q Consensus 154 ~k~Es~KL~eraa~AE~Em~R----GrtkLr~aG~qIq~L~s 191 (250)
++.|+..|++.+.-+|.+-.+ +..+..-..+|++.|..
T Consensus 101 LkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHH
Confidence 566667777777777666665 55666666777777764
No 184
>PHA02699 hypothetical protein; Provisional
Probab=42.60 E-value=3.8e+02 Score=27.24 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=27.8
Q ss_pred cCCchhHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 025643 209 EIPGREALK-LRAEVASMASLLKRQRAMMDKQIMKISELGVS 249 (250)
Q Consensus 209 ~LPsreA~~-LRsEVAs~AS~lK~qR~aL~k~l~KIs~~GV~ 249 (250)
.||+-|..+ |=-+. ---|+...+|+.|-++|+-|+-.|++
T Consensus 416 ~lp~ce~ierfi~~~-~c~s~a~~~r~~lvqrl~~lag~g~r 456 (466)
T PHA02699 416 TLPRCECIEKFIHHM-VCNSEAGIERNELVQRLTMIAGAGYR 456 (466)
T ss_pred cCCcchHHHHHHHHH-HhcchhhhhHHHHHHHHHHHhcCceE
Confidence 467766543 11111 34577889999999999999988764
No 185
>PRK11546 zraP zinc resistance protein; Provisional
Probab=42.19 E-value=2.3e+02 Score=24.52 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=27.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 025643 215 ALKLRAEVASMASLLKRQRAMMDKQIMKISELGVS 249 (250)
Q Consensus 215 A~~LRsEVAs~AS~lK~qR~aL~k~l~KIs~~GV~ 249 (250)
...|..||+.+=.++..+|-.++.++.|. ||+
T Consensus 91 I~aL~kEI~~Lr~kL~e~r~~~~~~~~k~---Gv~ 122 (143)
T PRK11546 91 INAVAKEMENLRQSLDELRVKRDIAMAEA---GIP 122 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCC
Confidence 56788899999999999999999999985 876
No 186
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=42.16 E-value=2.7e+02 Score=25.31 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=13.3
Q ss_pred hHHH--HHHHHHHHHHHHHHhh
Q 025643 38 WFGL--VSSIFLLILVYLIFSH 57 (250)
Q Consensus 38 ~~~~--~~~~~~~~~~~~~~~~ 57 (250)
|++| +..++++|++|++|-+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ 27 (331)
T PRK03598 6 VIGLAVVVLAAAVAGGWWWYQS 27 (331)
T ss_pred EEEhHHHHHHHHHHHheeEeee
Confidence 6554 4556677778888765
No 187
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=41.95 E-value=1.8e+02 Score=23.21 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=44.5
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH---HHchHHHHHHHHHHHHHHH
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKE---MIRGETELKNAGNQVQRLA 190 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~E---m~RGrtkLr~aG~qIq~L~ 190 (250)
.+|..-|.||+.-=.+|.+++-|++.|.+.-.....| ...||..|.+.-.|++.--
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3677889999999999999999999998776655554 4568888888888887643
No 188
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=41.95 E-value=67 Score=26.53 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHH--HHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCch
Q 025643 154 MKKESKKLLERAALAEK--EMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 154 ~k~Es~KL~eraa~AE~--Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsr 213 (250)
.++|...+.++....+. +...+..++.....+|+..+..+-..--..+|+=..|=++|+.
T Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~~~gLvDFPa~ 86 (120)
T PF09969_consen 25 LKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEELGVEVKDLDPGLVDFPAK 86 (120)
T ss_pred HHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHHcCcEEeCCcceeEeCCcc
Confidence 34444444444443332 5677788888888888888777666655556655567777764
No 189
>PRK12704 phosphodiesterase; Provisional
Probab=41.95 E-value=3.9e+02 Score=27.09 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHc
Q 025643 155 KKESKKLLERAALAEKEMIR 174 (250)
Q Consensus 155 k~Es~KL~eraa~AE~Em~R 174 (250)
.+++++.++++..-|+.+.+
T Consensus 81 e~~L~qrE~rL~~Ree~Le~ 100 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDR 100 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 190
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=41.86 E-value=82 Score=28.84 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=39.7
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHH----HHHHHHHHhh
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL----AKQVYKVETQ 199 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L----~ssvyK~E~~ 199 (250)
-+..|++.+++-...-+-- .|.++|++.+-.|..||-|-.+ ..+-|.++ .+++||-+|.
T Consensus 14 ~Ye~A~~~Ye~av~ng~~~-q~~Kql~KA~NIAKse~drdaa----vqkKLerMAe~Am~~MYkeaRa 76 (199)
T PF08717_consen 14 AYETARQAYEEAVANGSSP-QELKQLKKAMNIAKSEFDRDAA----VQKKLERMAEQAMTQMYKEARA 76 (199)
T ss_dssp HHHHHHHHHHHHHHCT--H-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCHCHH
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHhHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777766544444 8899999999999999988765 34455555 4566776654
No 191
>PRK14159 heat shock protein GrpE; Provisional
Probab=41.84 E-value=2.5e+02 Score=24.81 Aligned_cols=88 Identities=18% Similarity=0.273 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCchhHHhHHHH-HHHHHHHHHHHHHH
Q 025643 159 KKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGREALKLRAE-VASMASLLKRQRAM 235 (250)
Q Consensus 159 ~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsreA~~LRsE-VAs~AS~lK~qR~a 235 (250)
+.|++.+.--++.++|-.++.-+..+-.++-.. .-|..|+-+.+|+..+..|=..=...-..+ ..++ ++.-..+
T Consensus 33 ~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~~~~~~l---~~Gv~mi 109 (176)
T PRK14159 33 NKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECHDEISLKI---KEGVQNT 109 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchHHHH---HHHHHHH
Confidence 344444444445555555555555555555433 446788889999888877755411100111 1223 3334444
Q ss_pred HHHHHHHHhhcCCC
Q 025643 236 MDKQIMKISELGVS 249 (250)
Q Consensus 236 L~k~l~KIs~~GV~ 249 (250)
..+-+.-..++||.
T Consensus 110 ~k~l~~vL~k~Gv~ 123 (176)
T PRK14159 110 LDLFLKKLEKHGVA 123 (176)
T ss_pred HHHHHHHHHHCcCE
Confidence 44444555677774
No 192
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=41.81 E-value=4.6e+02 Score=27.95 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH-------------------------------------------
Q 025643 133 EEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAE------------------------------------------- 169 (250)
Q Consensus 133 EEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE------------------------------------------- 169 (250)
.++-+++..+...++...++.++...+||.+.+....
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (910)
T TIGR00833 510 VQAGMRLDGENLGQVSLAVRLMQQAISKLQGSAGDVFDIFDPLRRFVAAIPECRANPVCSVAREIVQAADTVVSSAAKLA 589 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHH
Q 025643 170 ---KEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDK 238 (250)
Q Consensus 170 ---~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR~aL~k 238 (250)
+++.+|.+.+.+..+|+.++.+.++.+..+...|.+.+..+. .....+.+..+...+..+.
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 653 (910)
T TIGR00833 590 DAAGQLARGIADVASALSQVSGLPNALDGIGTQLAQMRESAAGVQ--------DLLNELSDYSMTMGKLKGN 653 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhh
No 193
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=41.49 E-value=1.8e+02 Score=26.95 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=11.4
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHc
Q 025643 150 SGELMKKESKKLLERAALAEKEMIR 174 (250)
Q Consensus 150 svdl~k~Es~KL~eraa~AE~Em~R 174 (250)
....++.+.+..+.+...|+.++.|
T Consensus 107 ~l~~~~~~l~~a~~~l~~a~~~~~r 131 (370)
T PRK11578 107 TLMELRAQRQQAEAELKLARVTLSR 131 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555555544
No 194
>PRK14141 heat shock protein GrpE; Provisional
Probab=41.47 E-value=2.7e+02 Score=25.24 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCch
Q 025643 158 SKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 158 s~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsr 213 (250)
+++|++.+...++.+.|-..++-+-.+..++-.. ..|.+|+-+..|++.+..|=..
T Consensus 40 i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerA 97 (209)
T PRK14141 40 LEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRA 97 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Confidence 3333333333344445555555555555544433 4577899999999888877554
No 195
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=41.15 E-value=1.1e+02 Score=20.56 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=9.7
Q ss_pred HHHHHHhhhhHhhHhhHHhHHH
Q 025643 62 LSMLLWQDFVLHGVSQYQTYED 83 (250)
Q Consensus 62 ~~~~~lq~~~~~~~sqy~~yEd 83 (250)
.-++.+++-+..-..++|.+=|
T Consensus 26 ~~i~~~~~~~~~em~~fk~~s~ 47 (53)
T PF01484_consen 26 NDIQNFQSELDDEMEEFKEISD 47 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 196
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=41.13 E-value=18 Score=28.79 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=22.9
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHH
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKK 160 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~K 160 (250)
-||+|+...+||++.|+..|+|.++
T Consensus 62 tFnDcpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 62 TFNDCPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999876
No 197
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=40.89 E-value=4e+02 Score=27.03 Aligned_cols=178 Identities=19% Similarity=0.215 Sum_probs=95.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh--------------hhHhhHhhHHhHHHHHHHhH----HHHHHHH
Q 025643 35 PGFWFGLVSSIFLLILVYLIFSHSFLVLSMLLWQD--------------FVLHGVSQYQTYEDAFFSKV----KDELVSA 96 (250)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~--------------~~~~~~sqy~~yEd~fF~ki----Kegv~~A 96 (250)
-||..|++.||.|.++++++..+.---+-..-.+. =.+.+++|+-+.+|.++.-+ .....-|
T Consensus 68 agFfvaflvslVL~~l~~f~l~r~~~l~~~~l~r~r~~~~~s~Le~~~~~~~d~v~Ed~~~~Dq~idiL~~Edp~~m~qa 147 (429)
T PF12297_consen 68 AGFFVAFLVSLVLTWLCFFLLARTRCLQGRPLTRQRVQRHESKLEPSQFTSADGVSEDAAMNDQMIDILSSEDPGSMLQA 147 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccccchhhhccccccCCCCccccchhhhhhhhhhcccchhhhhhhcChHHHHHH
Confidence 48999999999999999888776432111110011 12344666666666655432 1122233
Q ss_pred hhcchhhHHHHHHHhHhhccchhHHHHHHhhhh----hccHHHHHHHHHHhHH-HHHHhHHhhHHHHHHHHHHHHH----
Q 025643 97 REHPAAATGVALTAGLLFMRGPRRFLFRHTFGR----LRSEEAMFVRAEKNVN-ELNLSGELMKKESKKLLERAAL---- 167 (250)
Q Consensus 97 ~ehP~~a~g~a~~agllll~gPRRfLyr~TlgR----F~SEEall~~Ae~kV~-eLr~svdl~k~Es~KL~eraa~---- 167 (250)
=++-.|+.-.-+. .=|...|-=++..+++. +.+.-.+--..++++- -++....++.+|++.=-+|.-.
T Consensus 148 Le~lei~tl~rad---~~LEa~R~qi~kdii~~lL~~L~~~g~ls~~~e~rl~~~~kkq~l~le~~l~eEy~rkm~aL~~ 224 (429)
T PF12297_consen 148 LEDLEIATLNRAD---ADLEACRIQISKDIISLLLKNLSSRGHLSPQVEKRLSSVFKKQFLGLEKRLQEEYDRKMVALTA 224 (429)
T ss_pred HHhhhHHHHHhcc---CcHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443443322222 24556676677766443 3444444444544442 2455555555555433332222
Q ss_pred ---------HHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHH
Q 025643 168 ---------AEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAE 221 (250)
Q Consensus 168 ---------AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsE 221 (250)
-|.+++|-...+++|.-.+++ -.|+.|....+-|+.+-..|..+||.-
T Consensus 225 ~c~lE~r~k~e~~~qre~a~~~eaeel~k~------~~e~~a~e~~~LL~~lH~leqe~L~~~ 281 (429)
T PF12297_consen 225 ECNLETRKKMEAQHQREMAEMEEAEELLKH------ASERSAAECSSLLRKLHGLEQEHLRRS 281 (429)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhC------ccHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 244455555555555444443 256778888888888888888777753
No 198
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=40.41 E-value=4.1e+02 Score=28.49 Aligned_cols=81 Identities=22% Similarity=0.166 Sum_probs=58.0
Q ss_pred hccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccc
Q 025643 130 LRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLRE 209 (250)
Q Consensus 130 F~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~ 209 (250)
...||.|+...-.+=..|...|..+.+|++.+.-.+.-...|--| -....+.+-...-..|.+-..|.+++++
T Consensus 15 ~~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~r-------l~~~~~~~~~~~~~~e~~~~~lr~e~ke 87 (717)
T PF09730_consen 15 EEREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENER-------LSQLNQELRKECEDLELERKRLREEIKE 87 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999998999999999999988776554444443333 2333334444455678888889999999
Q ss_pred CCchhHHh
Q 025643 210 IPGREALK 217 (250)
Q Consensus 210 LPsreA~~ 217 (250)
+..||+--
T Consensus 88 ~K~rE~rl 95 (717)
T PF09730_consen 88 YKFREARL 95 (717)
T ss_pred HHHHHHHH
Confidence 99888743
No 199
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=40.38 E-value=3.7e+02 Score=30.12 Aligned_cols=40 Identities=10% Similarity=0.039 Sum_probs=24.4
Q ss_pred HHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHH
Q 025643 123 FRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAA 166 (250)
Q Consensus 123 yr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa 166 (250)
|..|+.-+ +-.....++.++|++.++..-++.+.++++..
T Consensus 50 l~~tl~~l----~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~ 89 (1109)
T PRK10929 50 LQSALNWL----EERKGSLERAKQYQQVIDNFPKLSAELRQQLN 89 (1109)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45555444 22344455667777777777777777766655
No 200
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=40.25 E-value=2.5e+02 Score=24.34 Aligned_cols=72 Identities=15% Similarity=0.064 Sum_probs=46.4
Q ss_pred HHHHhhhHHHHHHHHHhhhhHhhHhhHHhHH------HHHHHhHHHHHHHHhhc-chhhHHHHHHHhHhhccchhHHHH
Q 025643 52 YLIFSHSFLVLSMLLWQDFVLHGVSQYQTYE------DAFFSKVKDELVSAREH-PAAATGVALTAGLLFMRGPRRFLF 123 (250)
Q Consensus 52 ~~~~~~~~~~~~~~~lq~~~~~~~sqy~~yE------d~fF~kiKegv~~A~eh-P~~a~g~a~~agllll~gPRRfLy 123 (250)
+..+.+..+.+..+.++...++..+.|+..+ +..-+..++....-..- |.+....+....++...-.|+.+=
T Consensus 107 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~~i~~~~~~~~~~~l~~~il~ 185 (290)
T PF09991_consen 107 AYLSGINIFEQLIEQIQESIEQVLKIYSQSGLPQDQVDQLQKNLQQIAELIKRLFPALLIISALLMSLINYYLARRILR 185 (290)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677888888888888888887651 12222334444433333 888888888888877777777663
No 201
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=40.19 E-value=5.8e+02 Score=28.61 Aligned_cols=100 Identities=23% Similarity=0.182 Sum_probs=60.4
Q ss_pred HHHHHHHhHHHHHHhHHh----hHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCC
Q 025643 136 MFVRAEKNVNELNLSGEL----MKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIP 211 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl----~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LP 211 (250)
.+..+.+.+++|-..+|- +-.|.+++++--.+||.|=+|-.++=+ ++.....+.--|.|..+..=++.=++..
T Consensus 897 ~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER~rrEaeek---~rre~ee~k~~k~e~e~kRK~eEeqr~~ 973 (1259)
T KOG0163|consen 897 EYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAERKRREAEEK---RRREEEEKKRAKAEMETKRKAEEEQRKA 973 (1259)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777777776665 667788887777778877666544322 2333334555555555555554444333
Q ss_pred ch-----hHHhHHHHHHHHHHHHHHHHHHHHH
Q 025643 212 GR-----EALKLRAEVASMASLLKRQRAMMDK 238 (250)
Q Consensus 212 sr-----eA~~LRsEVAs~AS~lK~qR~aL~k 238 (250)
.+ -++++.++.|.-+.+=.++|+.+++
T Consensus 974 qee~e~~l~~e~q~qla~e~eee~k~q~~~Eq 1005 (1259)
T KOG0163|consen 974 QEEEERRLALELQEQLAKEAEEEAKRQNQLEQ 1005 (1259)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 32 3566777777777766666676653
No 202
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=40.13 E-value=2.1e+02 Score=23.68 Aligned_cols=10 Identities=40% Similarity=0.973 Sum_probs=5.8
Q ss_pred HHhcccCCch
Q 025643 204 MEGLREIPGR 213 (250)
Q Consensus 204 ~d~LR~LPsr 213 (250)
++.|+++|.+
T Consensus 129 Ie~l~~vP~k 138 (142)
T PF04048_consen 129 IEELRQVPDK 138 (142)
T ss_pred HHHHHHhHHH
Confidence 4456666654
No 203
>PF01706 FliG_C: FliG C-terminal domain; InterPro: IPR023087 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ]. FliG is present in about 25 copies per flagellum. This entry represents the C-terminal domain of FliG, the structure of which is known. This domain functions specifically in motor rotation [].; PDB: 3USY_B 3USW_A 3HJL_A 3AJC_A 1LKV_X 1QC7_B.
Probab=40.11 E-value=87 Score=24.58 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=36.9
Q ss_pred HhcccCCchhHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcCC
Q 025643 205 EGLREIPGREALKLRAEVASM----ASLLKRQRAMMDKQIMKISELGV 248 (250)
Q Consensus 205 d~LR~LPsreA~~LRsEVAs~----AS~lK~qR~aL~k~l~KIs~~GV 248 (250)
-.|+.+|.+.|-.+|.|...+ .+++..-|+.+-..+.+..+-|.
T Consensus 59 ~il~nms~r~a~~l~~e~~~~g~v~~~di~~Aq~~iv~~~r~l~~~G~ 106 (110)
T PF01706_consen 59 KILSNMSKRAAEMLREEMEALGPVRLSDIEEAQREIVEIVRRLEEEGE 106 (110)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 468999999999999999886 57888888888889999888884
No 204
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=40.08 E-value=3.2e+02 Score=25.54 Aligned_cols=43 Identities=9% Similarity=0.245 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHhhHhhHHhHHHHHHHh
Q 025643 41 LVSSIFLLILVYLIFSHSFLVLSMLLWQDFVLHGVSQYQTYEDAFFSK 88 (250)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~sqy~~yEd~fF~k 88 (250)
+|...+.-+-+.=++.| ..+-|..++..+..-++..|...+.-
T Consensus 59 ~~~A~~~~~P~Lely~~-----~c~EL~~~I~egr~~~~~~E~~~~~~ 101 (325)
T PF08317_consen 59 YVVAGYCTVPMLELYQF-----SCRELKKYISEGRQIFEEIEEETYES 101 (325)
T ss_pred HHHHhccCChHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444433333344444 46788889888888888888876543
No 205
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=40.08 E-value=3e+02 Score=25.22 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=41.0
Q ss_pred hhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 025643 126 TFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLM 204 (250)
Q Consensus 126 TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~ 204 (250)
.+.-+.+||..+....+..+.|.+.=..+-.|++-...-.-.=|..++.-+++-...-..|+++-......-.+...+.
T Consensus 23 e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 23 EVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666555555555555444444555544444444444444444443333433333333
No 206
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=39.94 E-value=3.2e+02 Score=29.38 Aligned_cols=106 Identities=24% Similarity=0.305 Sum_probs=63.6
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREAL 216 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~ 216 (250)
+..+.......+...+-+..|.+.|++.+ -+..|+.|....+..+.....++.. .-+.+.++..|-.. ++=-.+|..
T Consensus 55 l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E-~er~~~El~ 131 (775)
T PF10174_consen 55 LSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAE-RERLQRELE 131 (775)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHH-HHHHHHHHH
Confidence 33344444444444455556666666666 6666666666666666666666665 55666666666544 233345777
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHhh
Q 025643 217 KLRAEVASMASLLKRQRAMMD---KQIMKISE 245 (250)
Q Consensus 217 ~LRsEVAs~AS~lK~qR~aL~---k~l~KIs~ 245 (250)
.||+.+-.+-..+-+++..++ ..|.|..+
T Consensus 132 ~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e 163 (775)
T PF10174_consen 132 RLRKTLEELQLRIETQQQTLDKADEEIEKLQE 163 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888777776666666555 45555544
No 207
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=39.80 E-value=2.4e+02 Score=27.77 Aligned_cols=91 Identities=11% Similarity=0.120 Sum_probs=0.0
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHH--------HHHHhhHHHHHHhcccCCch-
Q 025643 143 NVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQV--------YKVETQAADLMEGLREIPGR- 213 (250)
Q Consensus 143 kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssv--------yK~E~~A~gL~d~LR~LPsr- 213 (250)
++.+|+..++.++.|.++++++...++.+. +-|.++.... -..+.....+.+.+..+-.+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA-----------KFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEI 140 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Q ss_pred -hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025643 214 -EALKLRAEVASMASLLKRQRAMMDKQIMKIS 244 (250)
Q Consensus 214 -eA~~LRsEVAs~AS~lK~qR~aL~k~l~KIs 244 (250)
+...-+.+...--.+++++...|.+++.+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 141 ERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 208
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=39.75 E-value=3.7e+02 Score=30.87 Aligned_cols=70 Identities=24% Similarity=0.240 Sum_probs=43.8
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHH-HHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Q 025643 139 RAEKNVNELNLSGELMKKESKKLL-ERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLR 208 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~-eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR 208 (250)
.++.-.++|.+.++.++.+..-|+ +.-+++..+++.-..++.....+++.|...+...+....++.....
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~ 532 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND 532 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455577777777777776666 3556666666666666666666666666666555555555544433
No 209
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.43 E-value=4.4e+02 Score=27.02 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=40.9
Q ss_pred hcchhhHHHHHHHhHhhccc-----------hhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhH--------HHH
Q 025643 98 EHPAAATGVALTAGLLFMRG-----------PRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMK--------KES 158 (250)
Q Consensus 98 ehP~~a~g~a~~agllll~g-----------PRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k--------~Es 158 (250)
.+|..++-++=+.+=..+.. ...||- +|...=+.-+..+|++++++++.-..+. .++
T Consensus 164 ~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~----~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L 239 (754)
T TIGR01005 164 EDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLA----PEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQL 239 (754)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHH
Confidence 34888887776665444421 233333 3444445566677777777776433321 334
Q ss_pred HHHHHHHHHHHHHHHchHHHHH
Q 025643 159 KKLLERAALAEKEMIRGETELK 180 (250)
Q Consensus 159 ~KL~eraa~AE~Em~RGrtkLr 180 (250)
..+..+...|+.+.....+.+.
T Consensus 240 ~~l~~ql~~a~~~~~~a~a~~~ 261 (754)
T TIGR01005 240 AELNTELSRARANRAAAEGTAD 261 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444544444444444433
No 210
>PRK10884 SH3 domain-containing protein; Provisional
Probab=39.36 E-value=2.6e+02 Score=25.07 Aligned_cols=20 Identities=15% Similarity=0.027 Sum_probs=8.3
Q ss_pred HHHHHHHHhHHHHHHhHHhh
Q 025643 135 AMFVRAEKNVNELNLSGELM 154 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~ 154 (250)
..+...++++++++...+..
T Consensus 93 ~rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333
No 211
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=39.34 E-value=3.4e+02 Score=25.75 Aligned_cols=90 Identities=12% Similarity=0.210 Sum_probs=50.5
Q ss_pred hhhhHHHHhhhhhcccccccccccCCCCchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHhhHh---hHHhHHHH
Q 025643 8 LCDSIQRLCHSLSSFFPTQLFHLSSNPPGFWFGLVSSIFLLILVYLIFSHSFLVLSMLLWQDFVLHGVS---QYQTYEDA 84 (250)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~s---qy~~yEd~ 84 (250)
.+-.+.-|||.+-+++... +|| ++-.+-.+.|+.+-+++|.+.. .+.+-|++
T Consensus 189 a~tg~DAL~HaiE~y~s~~-----~~p--------------------~sd~~a~~ai~~i~~~l~~a~~~~~d~~aR~~m 243 (383)
T PRK09860 189 AATGMDALTHAIEAYVSIA-----ATP--------------------ITDACALKAVTMIAENLPLAVEDGSNAKAREAM 243 (383)
T ss_pred HHHHHHHHHHHHHHHHcCC-----CCH--------------------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3344566788877776542 344 2333444555666666666642 35566666
Q ss_pred HHHh---------HHHHHHHHhhcch-----hhHHHHHHHhHhhccchhHHHHHH
Q 025643 85 FFSK---------VKDELVSAREHPA-----AATGVALTAGLLFMRGPRRFLFRH 125 (250)
Q Consensus 85 fF~k---------iKegv~~A~ehP~-----~a~g~a~~agllll~gPRRfLyr~ 125 (250)
..+. ..-|+.-|.+||. +..|.+.+. +||.--+|.+..
T Consensus 244 ~~as~laG~a~~~~g~g~~Hal~h~lg~~~~ipHG~~~ai---~lP~vl~~n~~~ 295 (383)
T PRK09860 244 AYAQFLAGMAFNNASLGYVHAMAHQLGGFYNLPHGVCNAV---LLPHVQVFNSKV 295 (383)
T ss_pred HHHHHHHHHHHccccHHHHHHHhhHHhhCcCCCcHHHHHH---HHHHHHHHhhcc
Confidence 5554 3567777778875 444554444 666555555443
No 212
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=39.32 E-value=1.8e+02 Score=29.07 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=45.4
Q ss_pred HhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHH---HHHHHHHH--------------HHchHHHHHHHHHHHH
Q 025643 125 HTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLE---RAALAEKE--------------MIRGETELKNAGNQVQ 187 (250)
Q Consensus 125 ~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~e---raa~AE~E--------------m~RGrtkLr~aG~qIq 187 (250)
||..-=.+=++.+.+.+.+.++++..+..++.++.+++. --...+.- ....-......++||+
T Consensus 267 ntraV~k~~~~~m~k~~~ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 346 (391)
T smart00435 267 HQRTVSKTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIE 346 (391)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 444444445555666666666666666655555554331 00111111 1222223334567899
Q ss_pred HHHHHHHHHHhhHHHHHHhccc
Q 025643 188 RLAKQVYKVETQAADLMEGLRE 209 (250)
Q Consensus 188 ~L~ssvyK~E~~A~gL~d~LR~ 209 (250)
++-.++-|+|.|+.+ +|+..+
T Consensus 347 ~~~~~i~k~~~q~~~-ke~nk~ 367 (391)
T smart00435 347 RLEERIEKLEVQATD-KEENKT 367 (391)
T ss_pred HHHHHHHHHHHHHHh-hhcCee
Confidence 999999999988875 444443
No 213
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.30 E-value=2.2e+02 Score=23.62 Aligned_cols=53 Identities=23% Similarity=0.375 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHH
Q 025643 180 KNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQR 233 (250)
Q Consensus 180 r~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR 233 (250)
+...+++..|-..+-..+.+=..++.-|++ .+-+.-+||.+|+.+-.-.|.|=
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGE-K~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGE-KSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566677777777777777888888887 34588899999999988877763
No 214
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=38.95 E-value=32 Score=27.84 Aligned_cols=19 Identities=11% Similarity=0.480 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 025643 37 FWFGLVSSIFLLILVYLIF 55 (250)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~ 55 (250)
+|..+|..||++|+++.++
T Consensus 4 l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544443
No 215
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=38.83 E-value=2.9e+02 Score=24.78 Aligned_cols=83 Identities=25% Similarity=0.353 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCch---hHHhHHHHHHHHHHHHHH
Q 025643 155 KKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR---EALKLRAEVASMASLLKR 231 (250)
Q Consensus 155 k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsr---eA~~LRsEVAs~AS~lK~ 231 (250)
+.....+.........+....+..++....+|++|-..+.+.+.+-..|-+.++++-.. +--.+...|+++=+++.+
T Consensus 194 ~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~ 273 (312)
T PF00038_consen 194 QSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAE 273 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 33444445555555666666666666666666666666666666666666666665533 333444555555554444
Q ss_pred HHHHHH
Q 025643 232 QRAMMD 237 (250)
Q Consensus 232 qR~aL~ 237 (250)
-|.-+.
T Consensus 274 l~~~~~ 279 (312)
T PF00038_consen 274 LREEMA 279 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 216
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=38.83 E-value=2.7e+02 Score=24.32 Aligned_cols=78 Identities=23% Similarity=0.331 Sum_probs=43.8
Q ss_pred hhHHHHHHHhHhhccchhHHHHHHhhhhhccH-HHHHHHHHHhHHHHHHhHHhhHH-HHHHHHHHHHHHHHHHHchHHHH
Q 025643 102 AATGVALTAGLLFMRGPRRFLFRHTFGRLRSE-EAMFVRAEKNVNELNLSGELMKK-ESKKLLERAALAEKEMIRGETEL 179 (250)
Q Consensus 102 ~a~g~a~~agllll~gPRRfLyr~TlgRF~SE-Eall~~Ae~kV~eLr~svdl~k~-Es~KL~eraa~AE~Em~RGrtkL 179 (250)
++..+++++|+++ +++.++..+..-..+ +.++..|+.+.+.++.....--+ |.. +.-...|.|+..-+.+|
T Consensus 8 ~~~~vG~~~G~~~----~~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~---~~r~~~E~E~~~~~~el 80 (201)
T PF12072_consen 8 VALIVGIGIGYLV----RKKINRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQ---KLRQELERELKERRKEL 80 (201)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4455555666665 566666666554333 45677777777776655543322 222 23335667776666666
Q ss_pred HHHHHHH
Q 025643 180 KNAGNQV 186 (250)
Q Consensus 180 r~aG~qI 186 (250)
..--+.|
T Consensus 81 ~~~E~rl 87 (201)
T PF12072_consen 81 QRLEKRL 87 (201)
T ss_pred HHHHHHH
Confidence 6544433
No 217
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.74 E-value=3.7e+02 Score=25.97 Aligned_cols=19 Identities=11% Similarity=-0.057 Sum_probs=12.1
Q ss_pred cCCCCchhHHHHHHHHHHH
Q 025643 31 SSNPPGFWFGLVSSIFLLI 49 (250)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~ 49 (250)
...+|.=|-.++..+|-+=
T Consensus 145 ~~~~~~er~~il~~l~~~~ 163 (562)
T PHA02562 145 MQLSAPARRKLVEDLLDIS 163 (562)
T ss_pred hcCChHhHHHHHHHHhCCH
Confidence 3445667777777776543
No 218
>PRK11677 hypothetical protein; Provisional
Probab=38.73 E-value=1e+02 Score=26.15 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHH
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKLLERAAL 167 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~ 167 (250)
|.-+..++.+.+++|+.|+..=.++.+|.+.++-
T Consensus 35 e~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~ 68 (134)
T PRK11677 35 QYELEKNKAELEEYRQELVSHFARSAELLDTMAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777776654
No 219
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=38.72 E-value=1.5e+02 Score=28.57 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=37.5
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 025643 141 EKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 198 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~ 198 (250)
.+-.+.+++.++.++++.++|.++..... +-..++++.-.||+++-+++-.++.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777765554 5567788888888888777766554
No 220
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=38.53 E-value=1.1e+02 Score=28.92 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=38.7
Q ss_pred HHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHH
Q 025643 124 RHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNA 182 (250)
Q Consensus 124 r~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~a 182 (250)
++.+-+|++.+++... .+|+..-...+++|+++|.+.+.-|.+++++=+.+....
T Consensus 188 ~~~~~~~~~~~~~~~~----~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 188 RNDIDKFQEREDEKIL----HEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred hchhhhhhhhhhHHHH----HHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 3445688877776433 444555566688899999999999999988877665543
No 221
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=38.43 E-value=6.9e+02 Score=29.02 Aligned_cols=167 Identities=18% Similarity=0.182 Sum_probs=72.7
Q ss_pred cCCCCchhHHH-HHHHHHHHHHHHHHh--hhHHHHHHHHHhhhhHhhHhhHHhHHHHHHHhHHHHHHHHhhcchhhHHHH
Q 025643 31 SSNPPGFWFGL-VSSIFLLILVYLIFS--HSFLVLSMLLWQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVA 107 (250)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~lq~~~~~~~sqy~~yEd~fF~kiKegv~~A~ehP~~a~g~a 107 (250)
-+-|||.|... ...+|||+.-.|... -.||--|+...|+-.++.| .|+.|-. ++-=.+.|...=+..
T Consensus 1006 ~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~iW-kFQRY~l---------imeyh~rP~LPPPfi 1075 (1381)
T KOG3614|consen 1006 PSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQIW-KFQRYSL---------IMEYHSRPALPPPFI 1075 (1381)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHH---------HHHhhcCCCCCCCcH
Confidence 45678888753 334455432221111 1345556677777766643 4444422 112234454433322
Q ss_pred HHHh-----Hhhccch----hHHHHHHhhhhhccHHHH---HHHHHHhHHHHHHhHHhhHHHH--HHHHHHHHHHHHHHH
Q 025643 108 LTAG-----LLFMRGP----RRFLFRHTFGRLRSEEAM---FVRAEKNVNELNLSGELMKKES--KKLLERAALAEKEMI 173 (250)
Q Consensus 108 ~~ag-----llll~gP----RRfLyr~TlgRF~SEEal---l~~Ae~kV~eLr~svdl~k~Es--~KL~eraa~AE~Em~ 173 (250)
.-.= -.+.+++ |+...-.++..|-|+|.+ ..-=+.-|+.+-...+.-++++ |++...+.--|.-..
T Consensus 1076 ilsHi~l~~~r~~~~~~~~~~~~~~~~~~klfls~e~~~kl~~fEe~~vE~~~r~~~~~~~~s~~Erir~t~~rvd~~~~ 1155 (1381)
T KOG3614|consen 1076 ILSHIYLLLKRLSNSFRGDKRARDKDESLKLFLSKEENKKLHTFEEVCVENFLRKREMEQNSSTEERIRRTANRVDLILN 1155 (1381)
T ss_pred HHHHHHHHHHHHHcccCcccccchhhhhhHhhCCHHHHhhhhHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHH
Confidence 2111 1111222 345566777788887743 2233334444443333333333 554433221111111
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCC
Q 025643 174 RGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIP 211 (250)
Q Consensus 174 RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LP 211 (250)
| |+.-...+.-|-++++..|++-+.+.+-+.+.|
T Consensus 1156 ~----l~e~~~r~~~lk~~v~~~~~~l~~~~~~~~~~~ 1189 (1381)
T KOG3614|consen 1156 R----LIELEQREKTLKDSVQNSETRLASVLQFSEEYV 1189 (1381)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 133333344444455555555555544444433
No 222
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=38.43 E-value=3.6e+02 Score=25.71 Aligned_cols=51 Identities=24% Similarity=0.224 Sum_probs=35.9
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHH
Q 025643 140 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLA 190 (250)
Q Consensus 140 Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ 190 (250)
++.+.+.....++..+.|++.+++....+|++++--+.+.......+..+-
T Consensus 191 ~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566678888888888888888888888777666666665555543
No 223
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=38.03 E-value=39 Score=35.50 Aligned_cols=79 Identities=15% Similarity=0.254 Sum_probs=46.9
Q ss_pred cchhhhhHHHHhhhhhcccccccccccCCCCchhH-HHHHHHHH----------HHHHHHHHhhhHHHHHH-----HHHh
Q 025643 5 SSTLCDSIQRLCHSLSSFFPTQLFHLSSNPPGFWF-GLVSSIFL----------LILVYLIFSHSFLVLSM-----LLWQ 68 (250)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~-----~~lq 68 (250)
-+.+||...|+|.-|| ||--|+. +-|-+=+ +++..++| +=.+-+.|.-.||-+|+ +.|.
T Consensus 291 l~di~Dt~ERfaNaLS---PTpPFp~--~~~RlRLa~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r~~~~Ln 365 (642)
T PF11696_consen 291 LGDITDTWERFANALS---PTPPFPR--HTPRLRLAAILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITRGIDYLN 365 (642)
T ss_pred HhhHHHHHHHHhhccC---CCCCCCC--ccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHHHHHHHh
Confidence 4679999999999998 7776742 2222222 22222222 11222334445555554 4555
Q ss_pred hhhHhhHhhHHhHHHHHHHhH
Q 025643 69 DFVLHGVSQYQTYEDAFFSKV 89 (250)
Q Consensus 69 ~~~~~~~sqy~~yEd~fF~ki 89 (250)
.-+|. |.+|-...+.+|+-|
T Consensus 366 r~~P~-W~k~leLrntlLkGV 385 (642)
T PF11696_consen 366 RKYPN-WQKLLELRNTLLKGV 385 (642)
T ss_pred ccCCC-HHHHHHHHHHHhccC
Confidence 55554 888999999999875
No 224
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=37.87 E-value=2.5e+02 Score=23.70 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=37.4
Q ss_pred HHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHH
Q 025643 106 VALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKL 161 (250)
Q Consensus 106 ~a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL 161 (250)
..+...++++--=.+|+|.-..+-+..=+..+...-.+.++.+..++....|.++.
T Consensus 21 ~~~i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~ 76 (173)
T PRK13460 21 WTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEAR 76 (173)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666678899988877777766766666666666666666666555543
No 225
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.83 E-value=3e+02 Score=24.67 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=16.6
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 025643 145 NELNLSGELMKKESKKLLERAALAEKEMI 173 (250)
Q Consensus 145 ~eLr~svdl~k~Es~KL~eraa~AE~Em~ 173 (250)
.+++.-+..+++|.++|.++.+-+..+..
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34555556666666666666555555543
No 226
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.60 E-value=3.1e+02 Score=26.24 Aligned_cols=72 Identities=24% Similarity=0.249 Sum_probs=46.8
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccC
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI 210 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~L 210 (250)
.-....++++...+-+.+|-..|.++..--|.|+-.|+-.|+.-..+.-+|---.-+.+-....|.+.+.+|
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 344556777777777888888888887777778877777777666665555444444444444444444444
No 227
>PRK13824 replication initiation protein RepC; Provisional
Probab=37.50 E-value=4.1e+02 Score=26.14 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 025643 176 ETELKNAGNQVQRLAK 191 (250)
Q Consensus 176 rtkLr~aG~qIq~L~s 191 (250)
+-.+.-..++|+.++.
T Consensus 169 r~~it~~rRdi~~li~ 184 (404)
T PRK13824 169 RERLTLCRRDIAKLIE 184 (404)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444443
No 228
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=37.27 E-value=2.6e+02 Score=23.76 Aligned_cols=31 Identities=6% Similarity=0.147 Sum_probs=20.3
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHH
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKLLER 164 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL~er 164 (250)
|..-..|+...++++..+...+.|.+...+.
T Consensus 71 e~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 71 RALREEAQTLLASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777777777666544
No 229
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.25 E-value=4e+02 Score=25.96 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=46.0
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHH----HHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCc
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALA----EKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPG 212 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~A----E~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPs 212 (250)
+...+++..++...+|.+++|..++-+..... |++...=..+.++-+.+|..+..+.+.+|.+-..++..|-.+|.
T Consensus 32 i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~ 111 (418)
T TIGR00414 32 LIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPH 111 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 34455566666666666666666665555331 11011112234455567777777888888888888877777765
Q ss_pred h
Q 025643 213 R 213 (250)
Q Consensus 213 r 213 (250)
.
T Consensus 112 ~ 112 (418)
T TIGR00414 112 E 112 (418)
T ss_pred c
Confidence 4
No 230
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.07 E-value=1.5e+02 Score=22.88 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 173 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~ 173 (250)
+.-..-.+++.+.++..++.+.++..++.+....-+..|+
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 86 EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777777788888888888887777777766666554
No 231
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=37.02 E-value=5.2e+02 Score=27.18 Aligned_cols=79 Identities=22% Similarity=0.217 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccC
Q 025643 131 RSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI 210 (250)
Q Consensus 131 ~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~L 210 (250)
.+|+.+=.+-++-|-.+...++.+|.+.+.|.+...-|++ |-.|+-.|+.--+.+++= --|-|+...+++..-++-
T Consensus 253 ~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k-~s~~i~~l~ek~r~l~~D---~nk~~~~~~~mk~K~~~~ 328 (622)
T COG5185 253 PSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMK-ISQKIKTLREKWRALKSD---SNKYENYVNAMKQKSQEW 328 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHhc
Confidence 3678888888999999999999999999999999998874 677777777766666653 335555555666555555
Q ss_pred Cch
Q 025643 211 PGR 213 (250)
Q Consensus 211 Psr 213 (250)
|++
T Consensus 329 ~g~ 331 (622)
T COG5185 329 PGK 331 (622)
T ss_pred chH
Confidence 554
No 232
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=36.98 E-value=3e+02 Score=24.39 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHH
Q 025643 158 SKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRA 234 (250)
Q Consensus 158 s~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR~ 234 (250)
..++.+..--.|+++.+....++....+|..|-..+-..+++++-+...-.. -.++-.++.+++..+-.++...+-
T Consensus 105 ~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~-~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 105 QEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEA-KDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444455544444444443332211111 115555666666655555554443
No 233
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.74 E-value=3.8e+02 Score=25.45 Aligned_cols=82 Identities=17% Similarity=0.298 Sum_probs=60.4
Q ss_pred HHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025643 165 AALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKIS 244 (250)
Q Consensus 165 aa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR~aL~k~l~KIs 244 (250)
....+.++..-..+..++-++|++|-..+-++=++...+.+...++- .+--+|..|++.+-...+.+-..|.+|++-+-
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~-~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSK-AEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777777777777777777777777777666543 35567888888888888888888888887665
Q ss_pred hcC
Q 025643 245 ELG 247 (250)
Q Consensus 245 ~~G 247 (250)
.-|
T Consensus 112 ~nG 114 (265)
T COG3883 112 VNG 114 (265)
T ss_pred HcC
Confidence 444
No 234
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=36.55 E-value=2.7e+02 Score=23.72 Aligned_cols=93 Identities=12% Similarity=0.093 Sum_probs=50.0
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHH-HHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHH
Q 025643 138 VRAEKNVNELNLSGELMKKESKKLLERA-ALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREAL 216 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~KL~era-a~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~ 216 (250)
..|+...++++..++..+.|.+...+.+ ..||.+...-..+-+....++..-+...-..|++ ..+ .
T Consensus 72 ~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~--~a~-----------~ 138 (184)
T CHL00019 72 EEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQ--RAI-----------N 138 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----------H
Confidence 5666677777777777777777665443 4455555444444444444443333333333332 222 3
Q ss_pred hHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Q 025643 217 KLRAEVASMASLL-----------KRQRAMMDKQIMKI 243 (250)
Q Consensus 217 ~LRsEVAs~AS~l-----------K~qR~aL~k~l~KI 243 (250)
++|.||+++|-++ +.|+..+|+-|.++
T Consensus 139 ~l~~ei~~lav~~A~kil~~~ld~~~~~~lid~~i~~l 176 (184)
T CHL00019 139 QVRQQVFQLALQRALGTLNSCLNNELHLRTINANIGLL 176 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHHH
Confidence 4566666665444 44566666666655
No 235
>PF04698 Rab_eff_C: Rab effector MyRIP/melanophilin C-terminus; InterPro: IPR006788 MOBP is abundantly expressed in central nervous system myelin, and shares several characteristics with myelin basic protein (MBP), in terms of regional distribution and function. MOBP has been shown to be essential for normal arrangement of the radial component in central nervous system myelin [, ].
Probab=36.50 E-value=82 Score=33.60 Aligned_cols=73 Identities=30% Similarity=0.434 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHhhHHHHHHhcccCCch----hHHhHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 025643 178 ELKNAGNQVQRL-------AKQVYKVETQAADLMEGLREIPGR----EALKLRAEVASMASLLKR---QRAMMDKQIMKI 243 (250)
Q Consensus 178 kLr~aG~qIq~L-------~ssvyK~E~~A~gL~d~LR~LPsr----eA~~LRsEVAs~AS~lK~---qR~aL~k~l~KI 243 (250)
+=+....|+++| +..+|..|.+-.+|-|--|.|++. |=++|--+||+.|++|.+ |.+-+..+|.-.
T Consensus 541 d~~~ldeq~~~le~~vy~~ag~~y~le~~l~~le~~a~~~~~~t~d~el~~le~~va~aaa~vq~~e~~~s~i~~ri~al 620 (714)
T PF04698_consen 541 DPRRLDEQLTKLEENVYLAAGKVYGLEKQLRDLEECARQIHSGTTDSELSELEDQVASAAAQVQQAESEVSDIESRIAAL 620 (714)
T ss_pred chHHHHHHHHHHHHHHhhcccceeecccchhHHHHhhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334556688888 456678899999999999988876 778999999999999876 566677888888
Q ss_pred hhcCCCC
Q 025643 244 SELGVSV 250 (250)
Q Consensus 244 s~~GV~V 250 (250)
...|..|
T Consensus 621 ~~agl~v 627 (714)
T PF04698_consen 621 SAAGLNV 627 (714)
T ss_pred HhcCcee
Confidence 8888765
No 236
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=35.87 E-value=1.9e+02 Score=21.65 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=29.8
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETEL 179 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkL 179 (250)
+..-...|.+|+..||.+++|..-+..-+..|.+|-.|.-.-|
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778888888888888888777777777665544333
No 237
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=35.86 E-value=3.4e+02 Score=24.68 Aligned_cols=97 Identities=22% Similarity=0.237 Sum_probs=44.8
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhH
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKL 218 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~L 218 (250)
.++.....|.........|.+.|.....-||.++.+=...-.....+=..|...+-..+..+..|.+. .+-.-+++.+|
T Consensus 30 e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee-~~~ke~Ea~~l 108 (246)
T PF00769_consen 30 ESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEE-SERKEEEAEEL 108 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34444455555555555566666666666666666544443333333344555555555555443332 22234466666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025643 219 RAEVASMASLLKRQRAMM 236 (250)
Q Consensus 219 RsEVAs~AS~lK~qR~aL 236 (250)
+.++...-....+.+..|
T Consensus 109 q~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 109 QEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666655555444444443
No 238
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=35.84 E-value=7.8e+02 Score=28.86 Aligned_cols=116 Identities=19% Similarity=0.115 Sum_probs=59.4
Q ss_pred HHHHHhhhHHHHHHHHHhhhhHhhHhhHHhHHHH--HHHhHHHHHHHHhhcchhhHHHHHHHhHhhccchhHHHHHHhhh
Q 025643 51 VYLIFSHSFLVLSMLLWQDFVLHGVSQYQTYEDA--FFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFG 128 (250)
Q Consensus 51 ~~~~~~~~~~~~~~~~lq~~~~~~~sqy~~yEd~--fF~kiKegv~~A~ehP~~a~g~a~~agllll~gPRRfLyr~Tlg 128 (250)
|=.|.+|.- .-++........|...-+..|+. --+.|+++|..|..-..++-.+.-.+-- -.+..+..|+.-- -
T Consensus 1530 Vd~IL~~T~--~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~-~~~~a~~~l~kv~-~ 1605 (1758)
T KOG0994|consen 1530 VDAILSRTK--GDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADR-DIRLAQQLLAKVQ-E 1605 (1758)
T ss_pred HHHHHHhhh--hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHH-H
Confidence 455666653 33444444433343333334433 2345778877776665555443322211 2345566665433 3
Q ss_pred hhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q 025643 129 RLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEK 170 (250)
Q Consensus 129 RF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~ 170 (250)
+..+-|..+..|.+.+.+|...|+.+|.+..+--..|..||+
T Consensus 1606 ~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~ 1647 (1758)
T KOG0994|consen 1606 ETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEK 1647 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 334445555666666777777777776655544444444443
No 239
>KOG1852 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=35.84 E-value=22 Score=32.28 Aligned_cols=13 Identities=46% Similarity=0.777 Sum_probs=11.7
Q ss_pred HHHHHHhhhHHHH
Q 025643 50 LVYLIFSHSFLVL 62 (250)
Q Consensus 50 ~~~~~~~~~~~~~ 62 (250)
=||-||||.|||-
T Consensus 162 rvyrifsha~fhh 174 (223)
T KOG1852|consen 162 RVYRIFSHAYFHH 174 (223)
T ss_pred HHHHHHHHHHHHH
Confidence 4899999999995
No 240
>PRK12472 hypothetical protein; Provisional
Probab=35.81 E-value=2.6e+02 Score=28.89 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=56.9
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHH---------HHHHHHHHhhHHHHHHhcc
Q 025643 138 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL---------AKQVYKVETQAADLMEGLR 208 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L---------~ssvyK~E~~A~gL~d~LR 208 (250)
..|.+--+|.++.++.-..|.+.|...+..+|....|.-.+|.+|-++|... ...--|.|.++...-..|.
T Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~~d~~~~~a~~~~~~~~~~~~~a~~~~~ 279 (508)
T PRK12472 200 EDAARAADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLD 279 (508)
T ss_pred HHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3466777889999999999999999999999999999999999999999865 3445556666655555554
Q ss_pred c
Q 025643 209 E 209 (250)
Q Consensus 209 ~ 209 (250)
.
T Consensus 280 ~ 280 (508)
T PRK12472 280 T 280 (508)
T ss_pred H
Confidence 3
No 241
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=35.81 E-value=1.7e+02 Score=22.11 Aligned_cols=66 Identities=24% Similarity=0.239 Sum_probs=40.2
Q ss_pred HHHHHHHHHH-HHHHHhhhHHHHHHHHHhhhhHhhHhhH--HhHHHHHHHhHH-----HHHHHHhhcchhhHHH
Q 025643 41 LVSSIFLLIL-VYLIFSHSFLVLSMLLWQDFVLHGVSQY--QTYEDAFFSKVK-----DELVSAREHPAAATGV 106 (250)
Q Consensus 41 ~~~~~~~~~~-~~~~~~~~~~~~~~~~lq~~~~~~~sqy--~~yEd~fF~kiK-----egv~~A~ehP~~a~g~ 106 (250)
+++.++++|. +..+++-.||..++.+.+..-+.-.++. ...||.-+...+ ........+|..-+|+
T Consensus 7 l~~l~lliig~~~~v~~~GfFd~~~ygfrr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (92)
T PF13038_consen 7 LVGLILLIIGGFLFVFQSGFFDGFSYGFRRLFRQIKKKKKKSSIEDDEFSNDKKLKKEKYRVSRWTYPLLLIGL 80 (92)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcccchhhhccchhccchHHHHHhhhHhHHHHHHHHHHHH
Confidence 4444444443 3456677789999999999988887776 456665554443 2333344445555553
No 242
>PRK14157 heat shock protein GrpE; Provisional
Probab=35.52 E-value=3.2e+02 Score=25.26 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCch
Q 025643 157 ESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 157 Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsr 213 (250)
++.+|++.+..-.+.++|-..+.-|-.+..++-.. .-|.+++-+.+|+..+..|=+.
T Consensus 85 ~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeRA 143 (227)
T PRK14157 85 PLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDRI 143 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 33333333333344444555555555544444433 3456888899999888887654
No 243
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=35.48 E-value=7.5e+02 Score=28.58 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=9.9
Q ss_pred HHHHHHHHhhHHHHHHhcccC
Q 025643 190 AKQVYKVETQAADLMEGLREI 210 (250)
Q Consensus 190 ~ssvyK~E~~A~gL~d~LR~L 210 (250)
.++++..+..+.++-|.+..+
T Consensus 573 ~~~iq~~~e~~~~~~d~l~~l 593 (1317)
T KOG0612|consen 573 SKQIQQELEENRDLEDKLSLL 593 (1317)
T ss_pred hHHHHHHhhccccHHHHHHHH
Confidence 344444444445555544443
No 244
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=35.40 E-value=73 Score=30.83 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=41.2
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHH
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETE 178 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtk 178 (250)
++-|+..+...++.+-+|+.++++..+|....+.++++..+=|+|
T Consensus 137 ~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yWgk 181 (308)
T PF06717_consen 137 NYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRYWGK 181 (308)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 467899999999999999999999999999999999999887765
No 245
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=35.39 E-value=2.7e+02 Score=23.40 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=24.7
Q ss_pred hHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHH
Q 025643 119 RRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKL 161 (250)
Q Consensus 119 RRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL 161 (250)
.+|||.-..+-+..=..-+...-...++.+...+.+..|.++.
T Consensus 28 ~k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~ 70 (167)
T PRK14475 28 LKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAE 70 (167)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888877766665555555555555555555555555554443
No 246
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=35.27 E-value=1.8e+02 Score=21.35 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=10.7
Q ss_pred hHHHHHHHhHhhccchhH
Q 025643 103 ATGVALTAGLLFMRGPRR 120 (250)
Q Consensus 103 a~g~a~~agllll~gPRR 120 (250)
.+++++++|+|+-|.+.+
T Consensus 8 Ga~~Ga~~glL~aP~sG~ 25 (74)
T PF12732_consen 8 GAAAGAAAGLLFAPKSGK 25 (74)
T ss_pred HHHHHHHHHHHhCCCCcH
Confidence 345556666677666554
No 247
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=35.15 E-value=2.5e+02 Score=22.94 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=14.5
Q ss_pred HhHhhccchhHHHHHHhhhhh
Q 025643 110 AGLLFMRGPRRFLFRHTFGRL 130 (250)
Q Consensus 110 agllll~gPRRfLyr~TlgRF 130 (250)
+-++++|..|+++.+...+++
T Consensus 91 GllLllP~~R~~~~~~l~~~~ 111 (119)
T PF04186_consen 91 GLLLLLPPVRRLLRRLLMKRV 111 (119)
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 345678999999976644443
No 248
>PRK15396 murein lipoprotein; Provisional
Probab=35.13 E-value=2.1e+02 Score=22.41 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=28.5
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETE 178 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtk 178 (250)
+..-+..|..|+..+|.++++.+.+...+..|.+|-.|.-.-
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~R 68 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQR 68 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455777777777777777777777777777776654433
No 249
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=34.64 E-value=3.6e+02 Score=24.59 Aligned_cols=65 Identities=23% Similarity=0.343 Sum_probs=32.0
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhH
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQA 200 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A 200 (250)
++...+.+.+.|+..++.....-++-.++-..+.+|-+-=..+-+.+..||+.|=..|-..|+++
T Consensus 120 ~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 120 LIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666666665555555444444444444333344444444444444444444443
No 250
>PF08573 SAE2: DNA repair protein endonuclease SAE2/CtIP C-terminus; InterPro: IPR013882 SAE2 is a protein involved in repairing meiotic and mitotic double-strand breaks in DNA. It has been shown to negatively regulate DNA damage checkpoint signalling [, ]. SAE2 is homologous to the CtIP proteins in mammals and an homologous protein in plants. Crucial sequence motifs that are highly conserved are the CxxC and the RHR motifs in this C-terminal part of the protein []. It is now known to be an endonuclease. In budding yeast, genetic evidence suggests that the SAE2 protein is essential for the processing of hairpin DNA intermediates and meiotic double-strand breaks by Mre11/Rad50 complexes. SAE2 binds DNA and exhibits endonuclease activity on single-stranded DNA independently of Mre11/Rad50 complexes, but hairpin DNA structures are cleaved cooperatively in the presence of Mre11/Rad50 or Mre11/Rad50/Xrs2. Hairpin structures are not processed at the tip by SAE2 but rather at single-stranded DNA regions adjacent to the hairpin. The catalytic activities of SAE2 are important for its biological functions [].
Probab=34.52 E-value=18 Score=28.30 Aligned_cols=11 Identities=55% Similarity=1.458 Sum_probs=8.8
Q ss_pred ccccCCCCchh
Q 025643 28 FHLSSNPPGFW 38 (250)
Q Consensus 28 ~~~~~~~~~~~ 38 (250)
+.-.+.|||||
T Consensus 77 ~~rp~TPpGfW 87 (93)
T PF08573_consen 77 YARPSTPPGFW 87 (93)
T ss_pred CCCCCCCCCCc
Confidence 45567899999
No 251
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=34.49 E-value=2e+02 Score=24.44 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=35.9
Q ss_pred HHHHHhHHHHHHhHHhhHHHHH------------HHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHH
Q 025643 138 VRAEKNVNELNLSGELMKKESK------------KLLERAALAEKEMIRGETELKNAGNQVQRLAKQV 193 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~------------KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssv 193 (250)
+.-..+..+|+..++.++.|.. ||+.+...+|+|++.=...+......+....+.+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777764 5677777777777765555555555555554443
No 252
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=34.25 E-value=4.3e+02 Score=25.44 Aligned_cols=100 Identities=13% Similarity=0.224 Sum_probs=60.0
Q ss_pred HHHHh-HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHH---------------HHHHhhHHH
Q 025643 139 RAEKN-VNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQV---------------YKVETQAAD 202 (250)
Q Consensus 139 ~Ae~k-V~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssv---------------yK~E~~A~g 202 (250)
..+.. ++.||+..+.++.+...+..+...---++..+...+....++|+..+..+ --.+..-+.
T Consensus 281 ~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~ 360 (458)
T COG3206 281 VLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQ 360 (458)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence 33334 67777777777777777766666666666666666666665555554433 334455566
Q ss_pred HHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 203 LMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKI 243 (250)
Q Consensus 203 L~d~LR~LPsreA~~LRsEVAs~AS~lK~qR~aL~k~l~KI 243 (250)
+...+..+|..+ .+...+-.++...|..++..+.|.
T Consensus 361 l~~~~~~~~~~~-----~~l~~L~Re~~~~r~~ye~lL~r~ 396 (458)
T COG3206 361 LKGRLSKLPKLQ-----VQLRELEREAEAARSLYETLLQRY 396 (458)
T ss_pred HHHHHhhchHhh-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777653 344455555566666666665554
No 253
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=34.12 E-value=57 Score=23.53 Aligned_cols=30 Identities=20% Similarity=0.487 Sum_probs=20.8
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHhhh
Q 025643 29 HLSSNPPGFWFGLVSSIFLLILVYLIFSHS 58 (250)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (250)
.+..++|..|..+.-..++..++|++.-|.
T Consensus 15 E~dnplP~ww~~~f~~tivfa~~Y~~~yp~ 44 (51)
T PF14715_consen 15 ELDNPLPRWWLWLFYGTIVFAVGYLVLYPG 44 (51)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667888887776666777788877553
No 254
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=34.07 E-value=95 Score=23.79 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=25.5
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025643 141 EKNVNELNLSGELMKKESKKLLERAALAEKEM 172 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL~eraa~AE~Em 172 (250)
..++++|+..++.++.+.+++.++...++.++
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788888888888888888888888777665
No 255
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.00 E-value=1.4e+02 Score=23.92 Aligned_cols=20 Identities=10% Similarity=0.008 Sum_probs=7.8
Q ss_pred HHHHHHhHHHHHHhHHhhHH
Q 025643 137 FVRAEKNVNELNLSGELMKK 156 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~ 156 (250)
+...+++-+.|+..|+.+++
T Consensus 43 ~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 43 NAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 33333333344444443333
No 256
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.99 E-value=2.4e+02 Score=23.89 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025643 131 RSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEM 172 (250)
Q Consensus 131 ~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em 172 (250)
.+.+++-+.-+++++..+..|+.+.+--.+|+..++-||.-+
T Consensus 63 ~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nL 104 (114)
T KOG3501|consen 63 SDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNL 104 (114)
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888899999999999999999999999999999888644
No 257
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.84 E-value=1e+02 Score=21.90 Aligned_cols=27 Identities=26% Similarity=0.403 Sum_probs=14.6
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHH
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKL 161 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL 161 (250)
.-++.-+++.+++++..+.++.|.++|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555
No 258
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=33.46 E-value=1.9e+02 Score=28.59 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=20.3
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHH
Q 025643 141 EKNVNELNLSGELMKKESKKLLE 163 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL~e 163 (250)
-+|-+||+.++..++.|+.||.|
T Consensus 7 ~~kskE~~enik~l~~~~~~~~e 29 (378)
T TIGR00984 7 LQKSQELQESIKQLQDRSGKLNE 29 (378)
T ss_pred HHhhHHHHHHHHHHHHHHhhhhh
Confidence 36789999999999999999974
No 259
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=33.41 E-value=3.5e+02 Score=24.15 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=57.9
Q ss_pred HHHHHHHhHHHHH-HhHHhhHHHHHHHHHHHH-HHHHHHHchHHHHHH---------HHHHHHHHHHHHHHHHhhHHHHH
Q 025643 136 MFVRAEKNVNELN-LSGELMKKESKKLLERAA-LAEKEMIRGETELKN---------AGNQVQRLAKQVYKVETQAADLM 204 (250)
Q Consensus 136 ll~~Ae~kV~eLr-~svdl~k~Es~KL~eraa-~AE~Em~RGrtkLr~---------aG~qIq~L~ssvyK~E~~A~gL~ 204 (250)
++..|....+..+ .-++..+.|.+++.+++. ..|.|..+-...|++ |++-|...+.. ..-.+-....+
T Consensus 76 i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la~~~A~kil~~~~d~-~~~~~lid~~i 154 (246)
T TIGR03321 76 LLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTDLADT-DLEERMVDVFV 154 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHH
Confidence 3444444433332 334555566665554432 334444444444442 33434333322 11223346678
Q ss_pred HhcccCCchhHHhHHHHHHHH--------HHHH-HHHHHHHHHHHHHHhhcCC
Q 025643 205 EGLREIPGREALKLRAEVASM--------ASLL-KRQRAMMDKQIMKISELGV 248 (250)
Q Consensus 205 d~LR~LPsreA~~LRsEVAs~--------AS~l-K~qR~aL~k~l~KIs~~GV 248 (250)
+.|..+|..+-..|.+-.+.. |..+ ..++..+.+.|.+...-.|
T Consensus 155 ~~l~~l~~~~~~~l~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~l~~~~~~~v 207 (246)
T TIGR03321 155 QRLRTLDPDEKAALAEALADSGNPVLVRSAFELPEEQREQIRDTIRETLGPEI 207 (246)
T ss_pred HHhhcCCHHHHHHHHHHHhCCCCceEEEecCCCCHHHHHHHHHHHHHHHCCCe
Confidence 889999999777774433321 2222 5677778888887765444
No 260
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=33.38 E-value=2.9e+02 Score=23.20 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=40.7
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHH
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ 192 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ss 192 (250)
-...++++++.|.+.....-.|+.-|..+....|.++-.=..+|..+-..+..-.+.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~ 71 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR 71 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 345677788888888888888888888888888888777777777655555444443
No 261
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=33.38 E-value=2.5e+02 Score=22.41 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=36.7
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHH
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETEL 179 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkL 179 (250)
++=.+.+.-.|.+|+-.+|.+.++.+-+.....+|.+|=-|.-..|
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rl 69 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5777888888999999999999998888888888887766655444
No 262
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=33.28 E-value=1.6e+02 Score=28.97 Aligned_cols=102 Identities=23% Similarity=0.257 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHhh-------HhhHHhHHHHHHHhHHHHHHHHhhcchhhHHHHH--
Q 025643 38 WFGLVSSIFLLILVYLIFSHSFLVLSMLLWQDFVLHG-------VSQYQTYEDAFFSKVKDELVSAREHPAAATGVAL-- 108 (250)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~-------~sqy~~yEd~fF~kiKegv~~A~ehP~~a~g~a~-- 108 (250)
-||.+.-...+-++|+|..-.+++.=+.-+=++.=+. .----.||+.| ..+.-||.+.+..|+
T Consensus 242 v~~ai~~F~vl~ii~~i~~E~~L~~Yv~v~~G~~~G~lia~~~l~~p~~~Y~~~f--------~~~~~~~~i~~~la~i~ 313 (374)
T PF01528_consen 242 VFGAINVFAVLSIIYLIVIEVVLARYVKVQFGPHLGTLIACGILGLPAIRYENRF--------VAANLHTGIAINLAVIA 313 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHh--------ccccHHHHHHHHHHHHH
Confidence 3555555566677788887777776665555544333 22334688888 334444555554443
Q ss_pred --HHhHhhccchhHHHHHHhh-hhhccHHHHHHHHHHhHHHHHHh
Q 025643 109 --TAGLLFMRGPRRFLFRHTF-GRLRSEEAMFVRAEKNVNELNLS 150 (250)
Q Consensus 109 --~agllll~gPRRfLyr~Tl-gRF~SEEall~~Ae~kV~eLr~s 150 (250)
+++++++|--|.|+|++.- .+| ..+..+.+++++...+.
T Consensus 314 ~i~l~~~vvR~vR~~~~hr~~~~~y---~~l~~~~~~~vk~~~~~ 355 (374)
T PF01528_consen 314 IICLIMMVVRLVRAFLYHRRRSTRY---YPLVRTVRKRVKRYIRR 355 (374)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhh---hhcccchHHHHHhhccc
Confidence 4567788999999997652 233 24455555555555443
No 263
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.25 E-value=4e+02 Score=28.50 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=60.1
Q ss_pred hccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHh
Q 025643 130 LRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAG---NQVQRLAKQVYKVETQAADLMEG 206 (250)
Q Consensus 130 F~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG---~qIq~L~ssvyK~E~~A~gL~d~ 206 (250)
|++=-+=+-+-++.++.+++-++.+..|.+-+......|+-+...-++++++.. ..|++++..+.++|+ |-+.
T Consensus 77 FVnLStnLVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieK----L~k~ 152 (705)
T KOG2307|consen 77 FVNLSTNLVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEK----LSKM 152 (705)
T ss_pred HHhhhhhhccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 333334455677888888888888888888888888888888777777776655 456666666667765 7888
Q ss_pred cccCCchh
Q 025643 207 LREIPGRE 214 (250)
Q Consensus 207 LR~LPsre 214 (250)
|-.-|+++
T Consensus 153 L~s~psk~ 160 (705)
T KOG2307|consen 153 LLSPPSKE 160 (705)
T ss_pred hcCCcccc
Confidence 99999998
No 264
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=33.18 E-value=2.6e+02 Score=22.63 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=27.9
Q ss_pred HHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHH
Q 025643 107 ALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKES 158 (250)
Q Consensus 107 a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es 158 (250)
.++..++++--=.+|+|.-...-+..=+..+...-...++++..++...+|.
T Consensus 10 ~~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~ 61 (156)
T PRK05759 10 QLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKY 61 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555567888887776665555555444444444444444444333
No 265
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=32.62 E-value=3.2e+02 Score=23.46 Aligned_cols=50 Identities=12% Similarity=-0.007 Sum_probs=30.0
Q ss_pred hHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHH
Q 025643 111 GLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKK 160 (250)
Q Consensus 111 gllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~K 160 (250)
.++++--..+|+|....+-+..=+..+.+--.+.++.+..++.+..|-+.
T Consensus 41 F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~ 90 (181)
T PRK13454 41 LVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNK 90 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455889998877777666665555555555555555555544443
No 266
>PF13997 YqjK: YqjK-like protein
Probab=32.54 E-value=49 Score=25.12 Aligned_cols=31 Identities=35% Similarity=0.478 Sum_probs=21.4
Q ss_pred HHHHHHHHhhcchhhHHHHHHHhHhhccchhHHH
Q 025643 89 VKDELVSAREHPAAATGVALTAGLLFMRGPRRFL 122 (250)
Q Consensus 89 iKegv~~A~ehP~~a~g~a~~agllll~gPRRfL 122 (250)
-=+.+...+.||...+|+.+. +.++.|++++
T Consensus 29 ~w~~l~~lr~~~~l~~g~~a~---~~ir~P~r~~ 59 (73)
T PF13997_consen 29 GWQTLRSLRRHPILGSGVLAL---YGIRHPRRLI 59 (73)
T ss_pred HHHHHHHHHHhHHHHHHHHHH---HHHhChHHHH
Confidence 345566788999877765544 4677899854
No 267
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=32.48 E-value=83 Score=25.77 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHHHHHH
Q 025643 162 LERAALAEKEMIRGETELKNAGNQVQRLAKQ 192 (250)
Q Consensus 162 ~eraa~AE~Em~RGrtkLr~aG~qIq~L~ss 192 (250)
-+|+..|...+++-.-.|+.+|.+|++.+..
T Consensus 66 NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 66 NERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677777788888888899999999887754
No 268
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=32.38 E-value=1.3e+02 Score=23.76 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHhh
Q 025643 42 VSSIFLLILVYLIFSHSFLVLSMLLWQDFVLHG 74 (250)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~ 74 (250)
+..||++++...+|+..++..+-+.+.+.++.+
T Consensus 3 ~~~i~~lii~~~~~~~~~l~~~~~~i~~~l~~i 35 (121)
T PF14276_consen 3 VIIIFILIIALSIFSNNYLNNSTDSIEEQLEQI 35 (121)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 456777788888888888888878888776666
No 269
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=32.14 E-value=4e+02 Score=24.43 Aligned_cols=96 Identities=19% Similarity=0.266 Sum_probs=74.4
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHh
Q 025643 138 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALK 217 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~ 217 (250)
.+-+.++.+|++++.-+.+|++-|...+.+ +||| ..|+.|=+.+-..+..-..++..-+.+-..+-..
T Consensus 89 ~~l~ek~q~l~~t~s~veaEik~L~s~Lt~--eemQ----------e~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~ 156 (201)
T KOG4603|consen 89 VALTEKVQSLQQTCSYVEAEIKELSSALTT--EEMQ----------EEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQ 156 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--HHHH----------HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 456778888999999898888888765544 3444 4566666777777788888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025643 218 LRAEVASMASLLKRQRAMMDKQIMKISE 245 (250)
Q Consensus 218 LRsEVAs~AS~lK~qR~aL~k~l~KIs~ 245 (250)
.-.+-+.--++-++.|+....-+.++.+
T Consensus 157 v~~~y~~~~~~wrk~krmf~ei~d~~~e 184 (201)
T KOG4603|consen 157 VYREYQKYCKEWRKRKRMFREIIDKLLE 184 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777788888888888888888887764
No 270
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=32.03 E-value=2.2e+02 Score=21.27 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025643 132 SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEM 172 (250)
Q Consensus 132 SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em 172 (250)
+-+.+...-+.+.+.+...++.++++.+.+.++..-.++.+
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555566666666666666666666655555544443
No 271
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=31.84 E-value=5.4e+02 Score=25.82 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=48.6
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGL 207 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~L 207 (250)
...+..+....++.+..++-.+.|...|..-+..-..|+.+=...+.............+...+..-..+...|
T Consensus 280 ~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 280 QSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 34577777777777777777777777777777777777776666666666655555555555555544444444
No 272
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=31.72 E-value=3.6e+02 Score=23.68 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHH
Q 025643 156 KESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQ 232 (250)
Q Consensus 156 ~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~q 232 (250)
+|.+|++.++.-|+.++...+.+.+.+-.++...-. +-+..-..+.|.+-++=-..-.-++.-+-+.++-+...
T Consensus 150 ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~---~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~~s~~ 223 (236)
T cd07651 150 KELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNE---IWNREWKAALDDFQDLEEERIQFLKSNCWTFANNISTL 223 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999998887733 34555578888888887777777777777766666543
No 273
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=31.49 E-value=1e+02 Score=28.14 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=22.3
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHHhhhH
Q 025643 28 FHLSSNPPGFWFGLVSSIFLLILVYLIFSHSF 59 (250)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (250)
..+..+.|-+|+-+.-..++..++|+++-|.+
T Consensus 20 ~E~~n~~P~ww~~~f~~~i~~~~~y~~~yp~~ 51 (285)
T TIGR00782 20 EEYDNPLPRWWLWTFYATIVWGFGYLVAYPAW 51 (285)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34556678888777666666777888877655
No 274
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=31.45 E-value=3e+02 Score=27.71 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=42.3
Q ss_pred hhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhh
Q 025643 128 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQ 199 (250)
Q Consensus 128 gRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~ 199 (250)
.|..+=..=+..-++++.+-++.-..+.++++.++.....-|.++++-..+|..-.++|..+-.+.-+.|.+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 333333333444555555555566666666666666666666666666666666666666666666555544
No 275
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=31.29 E-value=3.6e+02 Score=23.53 Aligned_cols=97 Identities=22% Similarity=0.341 Sum_probs=66.7
Q ss_pred cHHHHHH---HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHH----HHHHHHHHHHHhhHHHHH
Q 025643 132 SEEAMFV---RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQV----QRLAKQVYKVETQAADLM 204 (250)
Q Consensus 132 SEEall~---~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qI----q~L~ssvyK~E~~A~gL~ 204 (250)
|.+.+|. .|.+.++.+++.++.++.+....-+..-.-|....+.|.+|+..-+.+ ..-++.+|- +|..+.
T Consensus 14 sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe---~A~~lQ 90 (159)
T PF05384_consen 14 SKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYE---EAHELQ 90 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHH---HHHHHH
Confidence 4444544 455678888899999999999999999999999999999999998888 455777774 344444
Q ss_pred HhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 205 EGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKI 243 (250)
Q Consensus 205 d~LR~LPsreA~~LRsEVAs~AS~lK~qR~aL~k~l~KI 243 (250)
-.|-.+-.+| ..|++.|.-|..++.+.
T Consensus 91 ~~L~~~re~E------------~qLr~rRD~LErrl~~l 117 (159)
T PF05384_consen 91 VRLAMLRERE------------KQLRERRDELERRLRNL 117 (159)
T ss_pred HHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 4443322222 24555666666555543
No 276
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=31.20 E-value=1.8e+02 Score=28.29 Aligned_cols=52 Identities=8% Similarity=0.105 Sum_probs=24.8
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHH
Q 025643 138 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 189 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L 189 (250)
.+.+.+=+.++..++.+-.|-+..+++.+.++++|+.+-.....-.++|..+
T Consensus 255 ekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 255 EKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333444444445555555555555555555555555444444444444333
No 277
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.87 E-value=2.2e+02 Score=30.40 Aligned_cols=79 Identities=20% Similarity=0.140 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccC
Q 025643 131 RSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI 210 (250)
Q Consensus 131 ~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~L 210 (250)
-.||+|+.-.-++-..+.+.|-.+.+|+++++.-+.--.+|- -.-.+.-+.+..+-..+|-+-..|.|+|++.
T Consensus 89 e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~-------erl~~~~sd~~e~~~~~E~qR~rlr~elKe~ 161 (772)
T KOG0999|consen 89 EREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEEN-------ERLEKVHSDLKESNAAVEDQRRRLRDELKEY 161 (772)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhcchhhHHHHHHHHHHHHHH
Confidence 458999999989999999999999999998864433222221 1112222333344445666777888888888
Q ss_pred CchhHH
Q 025643 211 PGREAL 216 (250)
Q Consensus 211 PsreA~ 216 (250)
.-|||-
T Consensus 162 KfRE~R 167 (772)
T KOG0999|consen 162 KFREAR 167 (772)
T ss_pred HHHHHH
Confidence 877763
No 278
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.76 E-value=1.4e+02 Score=27.56 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=21.2
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHH
Q 025643 147 LNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQR 188 (250)
Q Consensus 147 Lr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~ 188 (250)
|....|-.++|++||++.+..-++++.++.++-.+-.+|..+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556666665555555555555554444444444443
No 279
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.74 E-value=1.3e+02 Score=26.75 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=36.5
Q ss_pred CCC--chhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHhhhhHhhHhhHHhHHHHHHHhHHHHHHHHhhc
Q 025643 33 NPP--GFWFGLVSSIFLLILVYLIF----SHSFLVLSMLLWQDFVLHGVSQYQTYEDAFFSKVKDELVSAREH 99 (250)
Q Consensus 33 ~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lq~~~~~~~sqy~~yEd~fF~kiKegv~~A~eh 99 (250)
+|+ .||+-+...|.-++++-.++ +|.|+...+. .|+.+..=+...+|++.-=.-|.+|
T Consensus 43 ~~~~~nf~~NllGVil~~~~~~~~l~~~k~~p~m~Ev~Y---------vW~LKq~ln~I~rkl~~ik~aa~~~ 106 (165)
T PF11286_consen 43 GESGGNFHWNLLGVILGLLLTSALLRQLKTHPFMTEVYY---------VWQLKQLLNKIYRKLHKIKAAAEQG 106 (165)
T ss_pred CCCCCceeeeHHHHHHHHHHHHHHHHHHccChHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 554 38887776666665555554 4555554432 6778888888888876544444455
No 280
>COG4046 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.65 E-value=82 Score=31.09 Aligned_cols=58 Identities=16% Similarity=0.317 Sum_probs=39.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHhhHhhHHhHHHHHHHhHHH
Q 025643 34 PPGFWFGLVSSIFLLILVYLIFSHSFLVLSMLLWQDFVLHGVSQYQTYEDAFFSKVKD 91 (250)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~sqy~~yEd~fF~kiKe 91 (250)
..-||+-..+.|++.+|+.+.+-..+....+.-+..++.+.+.+...+|+..-.++++
T Consensus 8 ~~p~~il~~~~i~~vllfil~~~g~n~~~qv~lf~r~Ieg~l~~le~~~~~a~~~~~~ 65 (368)
T COG4046 8 YSPFWILDILGIAFVLLFILLLPGMNARVQVSLFSRYIEGALAELEKMENDAMKKVVE 65 (368)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhcCcceeEeehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458987777777777776666544444456666777777777777777777666544
No 281
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=30.32 E-value=2.3e+02 Score=24.15 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=32.5
Q ss_pred HHHHHHHHHhHHHHHH---hHHhhHHHHHHHHHHHHHHHHHHHchHHH
Q 025643 134 EAMFVRAEKNVNELNL---SGELMKKESKKLLERAALAEKEMIRGETE 178 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~---svdl~k~Es~KL~eraa~AE~Em~RGrtk 178 (250)
+.-+..++..+++|+. .++.++++++.|+.....++++++.=..+
T Consensus 33 k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~ 80 (155)
T PF06810_consen 33 KTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQ 80 (155)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777 67778888888888888777777654433
No 282
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=30.24 E-value=1.7e+02 Score=23.59 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=24.3
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 173 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~ 173 (250)
+-+++|.+|...++.+..|.+.|..+...+.+|.+
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~ 80 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREEKQ 80 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777666666654
No 283
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=30.24 E-value=1.6e+02 Score=22.01 Aligned_cols=43 Identities=28% Similarity=0.268 Sum_probs=22.7
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHH
Q 025643 138 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELK 180 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr 180 (250)
...+.-.++|...++.++.|..+|.+....-+++|..-..+|+
T Consensus 58 ~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 58 QDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555444443
No 284
>PRK04863 mukB cell division protein MukB; Provisional
Probab=30.12 E-value=9.2e+02 Score=27.98 Aligned_cols=29 Identities=7% Similarity=0.074 Sum_probs=11.4
Q ss_pred cCCchhHHhHHHHHHHHHHHHHHHHHHHH
Q 025643 209 EIPGREALKLRAEVASMASLLKRQRAMMD 237 (250)
Q Consensus 209 ~LPsreA~~LRsEVAs~AS~lK~qR~aL~ 237 (250)
.|+-.+......+-.....+...+...+.
T Consensus 434 ~~SdEeLe~~LenF~aklee~e~qL~elE 462 (1486)
T PRK04863 434 DLTADNAEDWLEEFQAKEQEATEELLSLE 462 (1486)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333333333333333333333
No 285
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=30.09 E-value=3.2e+02 Score=25.98 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=41.6
Q ss_pred HHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHH------HHHHHHHHHHHchHHHHHHHHHHHHHHH
Q 025643 122 LFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLL------ERAALAEKEMIRGETELKNAGNQVQRLA 190 (250)
Q Consensus 122 Lyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~------eraa~AE~Em~RGrtkLr~aG~qIq~L~ 190 (250)
-||.+|--. ...|..|...|.--+.+..|++||. .++...|.|+.|.-.+...+..||-++=
T Consensus 125 ~yR~~LK~I-------R~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 125 QYRIHLKSI-------RNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 355555544 4455556666666666666677765 3677788888888888888888887663
No 286
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=30.09 E-value=2.4e+02 Score=21.15 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=41.5
Q ss_pred HHHHHHHhHHHHHHhHHhh-------HHHHHHHHHHHHHHHH-HHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 025643 136 MFVRAEKNVNELNLSGELM-------KKESKKLLERAALAEK-EMIRGETELKNAGNQVQRLAKQVYKVETQAADL 203 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~-------k~Es~KL~eraa~AE~-Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL 203 (250)
-+.+.+.++++++++=+.+ ..+.+.+.+--...+- +...=..||.+..+.+.++-..+-+++..|..|
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666655555444 4444444442222211 122367788899999999999888888888765
No 287
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=29.79 E-value=40 Score=26.18 Aligned_cols=29 Identities=31% Similarity=0.731 Sum_probs=19.1
Q ss_pred cccCCCCchhH-HHHHHHHHHHHHHHHHhhhH
Q 025643 29 HLSSNPPGFWF-GLVSSIFLLILVYLIFSHSF 59 (250)
Q Consensus 29 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 59 (250)
+-|.-|++||. .++.|+. +++|.++-+.+
T Consensus 24 k~sv~P~~FW~lSl~Gs~l--ll~Y~i~r~Dp 53 (72)
T PF07578_consen 24 KKSVVPVAFWYLSLIGSLL--LLIYAIIRKDP 53 (72)
T ss_pred CCCCCcHHHHHHHHHHHHH--HHHHHHHHcCh
Confidence 45778999995 5666654 45677765544
No 288
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=29.74 E-value=3.4e+02 Score=23.22 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=29.1
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHH---HHHHHHHHHHHHchHHHHHHHHHHHHHHH
Q 025643 139 RAEKNVNELNLSGELMKKESKKL---LERAALAEKEMIRGETELKNAGNQVQRLA 190 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL---~eraa~AE~Em~RGrtkLr~aG~qIq~L~ 190 (250)
.+++.++..+...+..+++.++. .++=..++.|+..-++++..+..+++.+-
T Consensus 20 ~~~a~l~~a~~~l~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 74 (265)
T TIGR00999 20 KMAAELKVAQKRVELARKTYEREKKLFEQGVIPRQEFESAEYALEEAQAEVQAAK 74 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555443 33444566677666666666666665553
No 289
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=29.65 E-value=1.1e+02 Score=27.03 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=31.9
Q ss_pred HHHHHHhhhHHHH---HHHHHhhhhHhh--HhhHHhHHHHHHHhH-HHHHH
Q 025643 50 LVYLIFSHSFLVL---SMLLWQDFVLHG--VSQYQTYEDAFFSKV-KDELV 94 (250)
Q Consensus 50 ~~~~~~~~~~~~~---~~~~lq~~~~~~--~sqy~~yEd~fF~ki-Kegv~ 94 (250)
+.||-+.|--+-+ +++.++.+++.= +.|..+.+...-.|| |||+.
T Consensus 74 lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 74 LYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhccee
Confidence 4688888876544 444455554432 778889999999998 88887
No 290
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=29.64 E-value=1.1e+03 Score=28.53 Aligned_cols=88 Identities=23% Similarity=0.278 Sum_probs=57.0
Q ss_pred HHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 025643 124 RHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADL 203 (250)
Q Consensus 124 r~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL 203 (250)
+.+-.+.--||.....-+++.+++.+.+..++...+.++-...-++.|...--.++++.+.+|+.+-..+.|.-+...-+
T Consensus 911 ~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~l 990 (1930)
T KOG0161|consen 911 KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKEL 990 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555556666666666666666666666666667777777777778888888888777777766655555
Q ss_pred HHhcccCC
Q 025643 204 MEGLREIP 211 (250)
Q Consensus 204 ~d~LR~LP 211 (250)
=+.++++-
T Consensus 991 Ee~~~~l~ 998 (1930)
T KOG0161|consen 991 EERIRELQ 998 (1930)
T ss_pred HHHHHHHH
Confidence 55555543
No 291
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=29.60 E-value=1e+02 Score=22.32 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.5
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHH
Q 025643 144 VNELNLSGELMKKESKKLLERAAL 167 (250)
Q Consensus 144 V~eLr~svdl~k~Es~KL~eraa~ 167 (250)
++.|++-++.+.++.+.|+...+.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999887764
No 292
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=29.46 E-value=3.5e+02 Score=22.90 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=36.8
Q ss_pred hhhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHH
Q 025643 101 AAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESK 159 (250)
Q Consensus 101 ~~a~g~a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~ 159 (250)
..+....+...++++--=.+|+|+-..+-+..=+..+...-.+.++.+...+.+..|.+
T Consensus 18 ~~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e 76 (173)
T PRK13453 18 WGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENK 76 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666667789999888877766666665555555555555555544443
No 293
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=29.14 E-value=2.5e+02 Score=25.82 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=37.1
Q ss_pred ccHHHHHHH-HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHH
Q 025643 131 RSEEAMFVR-AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 189 (250)
Q Consensus 131 ~SEEall~~-Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L 189 (250)
|+|+..++. ...+-+.|+..+..++++.++|.+.... .+++.....+.=. ..||+-+
T Consensus 6 ~~~~~~ln~~~~~e~~~Lk~kir~le~~l~~Lk~~l~~-~~~l~~~L~~~Fs-~~Qi~~l 63 (236)
T PF12017_consen 6 QTEECILNRTLKIENKKLKKKIRRLEKELKKLKQKLEK-YQKLENSLKQIFS-EDQIRNL 63 (236)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCc-HHHHHHH
Confidence 678888877 4556677889999999999998877642 3344444333222 2355544
No 294
>PRK10325 heat shock protein GrpE; Provisional
Probab=29.11 E-value=4.1e+02 Score=23.61 Aligned_cols=78 Identities=12% Similarity=0.207 Sum_probs=47.7
Q ss_pred HHHHHchHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHhcccCCchhHH-hHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025643 169 EKEMIRGETELKNAGNQVQRLAKQ--VYKVETQAADLMEGLREIPGREAL-KLR-AEVASMASLLKRQRAMMDKQIMKIS 244 (250)
Q Consensus 169 E~Em~RGrtkLr~aG~qIq~L~ss--vyK~E~~A~gL~d~LR~LPsreA~-~LR-sEVAs~AS~lK~qR~aL~k~l~KIs 244 (250)
.+.+.|-..+.-+-.+..++-... .|.+++-+.+|++.+..|=..-+. ..- ..+.++..-++-..+.|.+. ..
T Consensus 59 ~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lLpv~DnlerAl~~~~~~~~~~~~l~~Gv~m~~~~l~~~---L~ 135 (197)
T PRK10325 59 RDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEGIELTLKSMLDV---VR 135 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH---HH
Confidence 466788888888877777766554 477889999999888887554211 111 12344444444444444443 35
Q ss_pred hcCCC
Q 025643 245 ELGVS 249 (250)
Q Consensus 245 ~~GV~ 249 (250)
++||.
T Consensus 136 ~~Gv~ 140 (197)
T PRK10325 136 KFGVE 140 (197)
T ss_pred HCcCe
Confidence 67774
No 295
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=29.06 E-value=1.9e+02 Score=23.76 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=39.3
Q ss_pred hhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Q 025643 128 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQ 187 (250)
Q Consensus 128 gRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq 187 (250)
...=+.+.|+..-+.+|.+.+..|.....|+++.++.=-. +.+..=+-||..+..+|+
T Consensus 56 ~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~~~KL~ea~~eL~ 113 (115)
T PF06476_consen 56 KAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKRQKKLAEAKAELK 113 (115)
T ss_pred HhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHh
Confidence 4556788899999999999999999999999887643222 223333344555544443
No 296
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=28.84 E-value=2.4e+02 Score=25.89 Aligned_cols=85 Identities=12% Similarity=0.154 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccc-----------C------CchhHHhHH
Q 025643 157 ESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLRE-----------I------PGREALKLR 219 (250)
Q Consensus 157 Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~-----------L------PsreA~~LR 219 (250)
++++|.+.....|.++..-+..+++|...-...+..-..+-+...+|+..=.. | -..+-.+.+
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak 112 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEAK 112 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444433111 1 112233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025643 220 AEVASMASLLKRQRAMMDKQIM 241 (250)
Q Consensus 220 sEVAs~AS~lK~qR~aL~k~l~ 241 (250)
.++..+-..+.+.-..|.+.|.
T Consensus 113 ~~l~~aE~~~e~~~~~L~~~Il 134 (207)
T PF05546_consen 113 EALEEAEEKVEEAFDDLMRAIL 134 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666665543
No 297
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.66 E-value=2.3e+02 Score=22.44 Aligned_cols=111 Identities=22% Similarity=0.199 Sum_probs=60.9
Q ss_pred HHHhhhHHHHHHHHHhhhhHhhHhhHHhHHHHHHHhHHHHHHHHhhc----chhhHHHHHHHhHhhccc----hhHHHHH
Q 025643 53 LIFSHSFLVLSMLLWQDFVLHGVSQYQTYEDAFFSKVKDELVSAREH----PAAATGVALTAGLLFMRG----PRRFLFR 124 (250)
Q Consensus 53 ~~~~~~~~~~~~~~lq~~~~~~~sqy~~yEd~fF~kiKegv~~A~eh----P~~a~g~a~~agllll~g----PRRfLyr 124 (250)
+..-...+.+-++.+|.-+.....+-..|++ .++.+...... .... +. +. -+.+|+ |-+.+..
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~-----~~~~l~~l~~~~~~~~~lv-pl--g~-~~~~~~~i~~~~~v~v~ 74 (129)
T cd00584 4 LAAQLQVLQQEIEELQQELARLNEAIAEYEQ-----AKETLETLKKADEGKETLV-PL--GA-GVFVKAKVKDTDKVLVD 74 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcCCCCCeEEE-EC--CC-CeEEeEEeCCCCEEEEE
Confidence 4445556667777777776666555555543 34444433321 1100 00 00 122222 2222221
Q ss_pred Hhhhhhc---cHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 025643 125 HTFGRLR---SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 173 (250)
Q Consensus 125 ~TlgRF~---SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~ 173 (250)
-=-|=|. .+|| ..-.+++.+.|+..++.+++++.++.+.+..-+..+.
T Consensus 75 iG~g~~vE~~~~eA-~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 75 LGTGYYVEKDLEEA-IEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred cCCCEEEEecHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112221 2333 3778889999999999999999999988877776654
No 298
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=28.12 E-value=41 Score=27.50 Aligned_cols=11 Identities=9% Similarity=0.797 Sum_probs=5.3
Q ss_pred hhHHHHHHHHH
Q 025643 37 FWFGLVSSIFL 47 (250)
Q Consensus 37 ~~~~~~~~~~~ 47 (250)
+|||++..+++
T Consensus 79 ~fyGf~igL~i 89 (97)
T PF05440_consen 79 MFYGFIIGLVI 89 (97)
T ss_pred HHHHHHHHHHH
Confidence 45555544444
No 299
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=27.82 E-value=3.5e+02 Score=25.21 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=22.5
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHH---HHHHHHHHHHHHchHHHHHHHHHHHH
Q 025643 138 VRAEKNVNELNLSGELMKKESKKL---LERAALAEKEMIRGETELKNAGNQVQ 187 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~KL---~eraa~AE~Em~RGrtkLr~aG~qIq 187 (250)
..+++.++..+...+..+.+.++. .+.=+..+++|...++++.++..++.
T Consensus 104 ~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~a~a~~~ 156 (385)
T PRK09578 104 DAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQAKAAVA 156 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443332 23334445555555555554444443
No 300
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.79 E-value=5.4e+02 Score=27.51 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=31.7
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 198 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~ 198 (250)
..+.+-+.+..+|+-.++.++.|..+|+++..-+-.++. .+.+ -.++|+.+-..+++.|+
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~---~~~~-~~rei~~~~~~I~~L~~ 488 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVR---DKVR-KDREIRARDRRIERLEK 488 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh-hhHHHHHHHHHHHHHHH
Confidence 334444555556666666677777777766666555554 1111 23444444444444443
No 301
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=27.72 E-value=7.6e+02 Score=26.21 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025643 218 LRAEVASMASLLKRQRAMMD 237 (250)
Q Consensus 218 LRsEVAs~AS~lK~qR~aL~ 237 (250)
+|.....|=+++|+.|.-|.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk 562 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666665543
No 302
>PRK09465 tolC outer membrane channel protein; Reviewed
Probab=27.64 E-value=4.9e+02 Score=23.99 Aligned_cols=26 Identities=8% Similarity=-0.029 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHchHHH
Q 025643 153 LMKKESKKLLERAALAEKEMIRGETE 178 (250)
Q Consensus 153 l~k~Es~KL~eraa~AE~Em~RGrtk 178 (250)
.++...+..++....++..|..|...
T Consensus 360 ~~~~~~~~a~~~~~~~~~~y~~G~~~ 385 (446)
T PRK09465 360 AYEQAVVSAQSSLDATEAGYEVGTRT 385 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccch
Confidence 33333333344444555555555443
No 303
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=27.61 E-value=4.9e+02 Score=24.02 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHhcccCCc
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQV--YKVETQAADLMEGLREIPG 212 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssv--yK~E~~A~gL~d~LR~LPs 212 (250)
..+...+.+++++...+-.-... +.+++...-++++.+-|..|......|+.+.++- ...+-...-+-|..+++=+
T Consensus 154 ~~le~i~~~~~~ie~~l~~~~~~--~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~ 231 (322)
T COG0598 154 PVLEQIEDELEAIEDQLLASTTN--EELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQ 231 (322)
T ss_pred HHHHHHHHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH
Q ss_pred h--hHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 213 R--EALKLRAEVASMASLLKRQRAMMDKQIMKI 243 (250)
Q Consensus 213 r--eA~~LRsEVAs~AS~lK~qR~aL~k~l~KI 243 (250)
- ....+|..++++.+..-..=+.=...++|+
T Consensus 232 ~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~ 264 (322)
T COG0598 232 LIEMLEALRERLSSLLDAYLSLINNNQNEIMKI 264 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 304
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.61 E-value=2e+02 Score=23.61 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHhhHhhHHhHHHHH
Q 025643 38 WFGLVSSIFLLILVYLIFSHSFLVLSMLLWQDFVLHGVSQYQTYEDAF 85 (250)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~sqy~~yEd~f 85 (250)
++|+|..+.+-++++-.++...-. -+.|+.=++.+..++..|.+.+
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~~~~--q~~l~~eL~~~k~el~~yk~~V 48 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSNQQK--QAKLEQELEQAKQELEQYKQEV 48 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccchhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665555555556666543 3688888888888888888765
No 305
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=27.58 E-value=5.9e+02 Score=24.88 Aligned_cols=28 Identities=29% Similarity=0.213 Sum_probs=10.7
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q 025643 143 NVNELNLSGELMKKESKKLLERAALAEK 170 (250)
Q Consensus 143 kV~eLr~svdl~k~Es~KL~eraa~AE~ 170 (250)
+.+++++.++..-++.+.+.++...+|+
T Consensus 272 r~r~l~~~L~~~l~~~~~l~~~L~~~~e 299 (495)
T PRK11644 272 RQRELNQSLQKELARNRHLAERLLETEE 299 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333433333333333334444444443
No 306
>PLN03223 Polycystin cation channel protein; Provisional
Probab=27.51 E-value=1.3e+02 Score=34.79 Aligned_cols=56 Identities=23% Similarity=0.464 Sum_probs=45.7
Q ss_pred hHHhhHHHHHHH---HHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 025643 150 SGELMKKESKKL---LERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLME 205 (250)
Q Consensus 150 svdl~k~Es~KL---~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d 205 (250)
.+|.+.+|.+.| +||+...+.++.-|+.|+.+-.+++-++-+++...|.+--|+++
T Consensus 1572 ~~~~l~~e~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~k~~~~~e 1630 (1634)
T PLN03223 1572 DGDVLEKEVDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLENKILGVLE 1630 (1634)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhhhccccC
Confidence 355667776666 58899999999999999999999999999988888887665543
No 307
>COG1538 TolC Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
Probab=27.44 E-value=4.3e+02 Score=25.09 Aligned_cols=61 Identities=21% Similarity=0.153 Sum_probs=39.1
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHch---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 025643 147 LNLSGELMKKESKKLLERAALAEKEMIRG---ETELKNAGNQVQRLAKQVYKVETQAADLMEGL 207 (250)
Q Consensus 147 Lr~svdl~k~Es~KL~eraa~AE~Em~RG---rtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~L 207 (250)
.+..++..+...+-..+....+|+.+..| ++++.++..++.+.-...-+.+.+....+..|
T Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~r~~~G~~~~~dv~qa~a~~~~a~~~l~~~~~~~~~a~~~L 229 (457)
T COG1538 166 AQEQLALAEETLAAAEEQLELAEKRYDAGLATRLDVLQAEAQLASARAQLAAAQAQLAQARNAL 229 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44556666666777777777788888777 55666777776666666655555554444333
No 308
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=27.43 E-value=4.8e+02 Score=27.84 Aligned_cols=119 Identities=12% Similarity=0.082 Sum_probs=60.7
Q ss_pred hhHHHHHHHhHhhccc-hhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHH
Q 025643 102 AATGVALTAGLLFMRG-PRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELK 180 (250)
Q Consensus 102 ~a~g~a~~agllll~g-PRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr 180 (250)
+.+.|++..+.+++|+ ||+.|=.+.-++++.=-+.+.+ ....++..... .+-.-+++....|--|-.+.+.++.
T Consensus 165 ~gi~ca~lV~~l~~P~~~~~~l~~~l~~~l~~a~~~l~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (683)
T PRK11427 165 YPTLLMTLIGVLWFPSRAINQMHQALNDRLDDAISHLTD---SLAPLPETRIE--REALALQKLNVFCLADDANWRTQSA 239 (683)
T ss_pred HHHHHHHHHHhHhCcCChHHHHHHHHHHHHHHHHHHhcC---CCcchhhhhhh--hhHHHHHHHHHHHhhccCCcHhhHH
Confidence 4567888899999999 9999988888887632221111 11111111111 2233334444445445455555443
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchh-----HHhHHHHHHHHHHHHHH
Q 025643 181 NAGNQVQRLAKQVYKVETQAADLMEGLREIPGRE-----ALKLRAEVASMASLLKR 231 (250)
Q Consensus 181 ~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsre-----A~~LRsEVAs~AS~lK~ 231 (250)
. +|+-.+++|.+=..+.-+ +. ..+|... ..+|..++.+|+.-+.+
T Consensus 240 ~----~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~~~a~~~~~ 289 (683)
T PRK11427 240 W----WQSCVATVTYIYSTLNRY-DA-TSFADSQAIIEFRQKLASEINKLQHAVAE 289 (683)
T ss_pred H----HHHHHHHHHHHHHHhccc-cc-cccCCCcccchhHHHHHHHHHHHHHHHHc
Confidence 3 555566665543332211 10 1233332 34566666666665544
No 309
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=27.37 E-value=3.3e+02 Score=21.91 Aligned_cols=44 Identities=5% Similarity=0.135 Sum_probs=25.9
Q ss_pred hhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHH
Q 025643 118 PRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKL 161 (250)
Q Consensus 118 PRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL 161 (250)
=.+|+|....+-+..=+.-+..--.+.++.+...+.+..|.++.
T Consensus 12 l~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~ 55 (147)
T TIGR01144 12 CMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVI 55 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788877777666655555555555555555555555444443
No 310
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=27.33 E-value=1.2e+03 Score=28.23 Aligned_cols=82 Identities=22% Similarity=0.258 Sum_probs=48.1
Q ss_pred HHhHHHHHHhHHhhHHHHHHHH-------HHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCch
Q 025643 141 EKNVNELNLSGELMKKESKKLL-------ERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL~-------eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsr 213 (250)
+.+-++|....+.+..|..-|. +-.+.||++..+.+.+.-..-.+++-+-.+....|.+...|-...+.+- .
T Consensus 858 e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~-~ 936 (1930)
T KOG0161|consen 858 ESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLE-Q 936 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3344444444444444444443 3445678888888888888888888887777777666655555554444 3
Q ss_pred hHHhHHHHHH
Q 025643 214 EALKLRAEVA 223 (250)
Q Consensus 214 eA~~LRsEVA 223 (250)
+...++.++.
T Consensus 937 e~~~l~~~~~ 946 (1930)
T KOG0161|consen 937 EVQELKEQLE 946 (1930)
T ss_pred HHHHHHHHHH
Confidence 4444433333
No 311
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=27.31 E-value=2e+02 Score=20.89 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=23.9
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHH
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERA 165 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~era 165 (250)
+...|+.+..+-+..|+.++.+++++..+.
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 478888888888888888888888886544
No 312
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=27.24 E-value=5.9e+02 Score=24.77 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=19.9
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHH-HHHHHHHHHc
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKLLER-AALAEKEMIR 174 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL~er-aa~AE~Em~R 174 (250)
|+-+..|++++..++..++.++...++-+.. +..|+.|+.|
T Consensus 97 ea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R 138 (352)
T COG1566 97 EAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELER 138 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544444442 4444444443
No 313
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=27.03 E-value=5.4e+02 Score=24.23 Aligned_cols=107 Identities=10% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHhcccCCchhH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGN-QVQRLAKQVYKVETQAADLMEGLREIPGREA 215 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~-qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA 215 (250)
+...+.+..+|+.....-.-+.+.+..+.+..++++..-..++..... ++..+-.+.-..+.+...+...+..+|..
T Consensus 263 l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~-- 340 (444)
T TIGR03017 263 IARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQ-- 340 (444)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 025643 216 LKLRAEVASMASLLKRQRAMMDKQIMKISELGV 248 (250)
Q Consensus 216 ~~LRsEVAs~AS~lK~qR~aL~k~l~KIs~~GV 248 (250)
..|...+-.++...+...+.-+.|..+.++
T Consensus 341 ---~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l 370 (444)
T TIGR03017 341 ---RDEMSVLQRDVENAQRAYDAAMQRYTQTRI 370 (444)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 314
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=26.99 E-value=63 Score=26.69 Aligned_cols=20 Identities=50% Similarity=0.795 Sum_probs=14.1
Q ss_pred hhHHHHH----HHHHHHHHHHHHh
Q 025643 37 FWFGLVS----SIFLLILVYLIFS 56 (250)
Q Consensus 37 ~~~~~~~----~~~~~~~~~~~~~ 56 (250)
-||.+|| .|-+|.|||+||-
T Consensus 70 ~W~T~~S~~tS~isIL~LV~~~~K 93 (100)
T PF06363_consen 70 AWFTVVSAVTSFISILLLVTKIFK 93 (100)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHh
Confidence 4777665 3556778999984
No 315
>PRK12705 hypothetical protein; Provisional
Probab=26.93 E-value=7e+02 Score=25.55 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHH
Q 025643 217 KLRAEVASMASLL 229 (250)
Q Consensus 217 ~LRsEVAs~AS~l 229 (250)
+++.|.+.+..+.
T Consensus 154 ~~~~e~~~~i~~~ 166 (508)
T PRK12705 154 ELEEEKAQRVKKI 166 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 3444544444433
No 316
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=26.91 E-value=5.6e+02 Score=24.43 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=34.4
Q ss_pred chhhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHH
Q 025643 100 PAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETEL 179 (250)
Q Consensus 100 P~~a~g~a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkL 179 (250)
-.+..-...+.|++.+ ||.+ |+.... ++. ..+-+.+..+.+..+|....+.+.+.+....-+++..+=+..+
T Consensus 169 Gl~l~i~~~g~Glv~i--P~~l-~~~~~~----~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (471)
T PF04791_consen 169 GLFLFIILLGYGLVAI--PRDL-WRSSNS----YFR-AAKLEDEAAEAKEKLDDIIEKLRRLRRILRDVEELRSELDTIL 240 (471)
T ss_pred HHHHHHHHHhccHHHH--HHHH-HHhccc----cch-hhhhcchhHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 3444445556666666 4443 433322 111 1222222233333344444444444333333333333334444
Q ss_pred HHHHHHHHHHHH
Q 025643 180 KNAGNQVQRLAK 191 (250)
Q Consensus 180 r~aG~qIq~L~s 191 (250)
..-.++++..++
T Consensus 241 ~~~~~~~~~~~~ 252 (471)
T PF04791_consen 241 NELPKEIQELIE 252 (471)
T ss_pred HhhHHHHHHHHh
Confidence 444555554433
No 317
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=26.90 E-value=6e+02 Score=25.44 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=18.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 214 EALKLRAEVASMASLLKRQRAMMDKQIMK 242 (250)
Q Consensus 214 eA~~LRsEVAs~AS~lK~qR~aL~k~l~K 242 (250)
+-.+++.++...+.++.+.|....+.+.+
T Consensus 354 el~~l~~~l~~~a~~Ls~~R~~~a~~l~~ 382 (563)
T TIGR00634 354 EVDKLEEELDKAAVALSLIRRKAAERLAK 382 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777666555544
No 318
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=26.84 E-value=1.3e+02 Score=24.90 Aligned_cols=51 Identities=29% Similarity=0.339 Sum_probs=26.5
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHhhHhhHHhHHHHH
Q 025643 26 QLFHLSSNPPGFWFGLVSSIFLLILVYLIFSHSFLVLSMLLWQDFVLHGVSQYQTYEDAF 85 (250)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~sqy~~yEd~f 85 (250)
|.+-+.+...|.|-.+ ++++++|-.+.|.-|=+. ..=--| ..|-+.||+++
T Consensus 25 ~~~G~d~~~AGi~sq~---~lv~glvgW~~sYlfRV~--t~~MTy----~~Q~k~Ye~a~ 75 (104)
T PF11460_consen 25 QAAGLDSLSAGIWSQA---LLVLGLVGWVSSYLFRVV--TGKMTY----MQQRKDYEEAV 75 (104)
T ss_pred HHcCCCchhhhHHHHH---HHHHHHHHHHhHHHhhhc--cCCCcH----HHHHHHHHHHH
Confidence 3555666666666433 344445555555444221 111122 56778888887
No 319
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.75 E-value=56 Score=33.27 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=8.2
Q ss_pred hHHhhHHHHHHHHHHH
Q 025643 150 SGELMKKESKKLLERA 165 (250)
Q Consensus 150 svdl~k~Es~KL~era 165 (250)
.||.|++|+++|+++.
T Consensus 32 kie~L~kql~~Lk~q~ 47 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQ 47 (489)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5555555555554443
No 320
>PLN02678 seryl-tRNA synthetase
Probab=26.59 E-value=6.6e+02 Score=25.16 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=17.7
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAA 166 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa 166 (250)
+-..+.+..++.+.+|.++.|..++-+...
T Consensus 35 il~ld~~~r~l~~~~e~lr~erN~~sk~I~ 64 (448)
T PLN02678 35 VIALDKEWRQRQFELDSLRKEFNKLNKEVA 64 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666655543
No 321
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=26.58 E-value=2e+02 Score=26.51 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=40.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHhhHhhHHhHHHHHHHhHHHHHH--HHhhcchhhH
Q 025643 35 PGFWFGLVSSIFLLILVYLIFSHSFLVLSMLLWQDFVLHGVSQYQTYEDAFFSKVKDELV--SAREHPAAAT 104 (250)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~sqy~~yEd~fF~kiKegv~--~A~ehP~~a~ 104 (250)
||-|-.|++..+-+++.|++|.- + ..-..+...-|-....-|+||+. ..-+||.+.-
T Consensus 177 ~gIa~ALitT~yGl~~An~v~~P------~-------a~kl~~~~~~e~~~~~~i~egi~ai~~G~~P~~~~ 235 (254)
T PRK08990 177 PAMAVALLTTLYGAVLANMVAIP------I-------ADKLSLRMGEEMLNRNLIMDAVLAIQDGQNPRVIE 235 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------H-------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 68888999999999888888753 2 12245556667777788999998 3345576654
No 322
>PRK00106 hypothetical protein; Provisional
Probab=26.57 E-value=7.3e+02 Score=25.61 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=5.6
Q ss_pred HHHHHHHhHHHHH
Q 025643 136 MFVRAEKNVNELN 148 (250)
Q Consensus 136 ll~~Ae~kV~eLr 148 (250)
++..|+++.+.+.
T Consensus 47 IleeAe~eAe~I~ 59 (535)
T PRK00106 47 LRGKAERDAEHIK 59 (535)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 323
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=26.57 E-value=2.2e+02 Score=21.98 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=30.2
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 173 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~ 173 (250)
+.-..-.+++.+.|+..++.+.++.+++.++....+..+.
T Consensus 76 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 76 EEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888888888888888777766654
No 324
>PF13994 PgaD: PgaD-like protein
Probab=26.52 E-value=2.9e+02 Score=22.80 Aligned_cols=75 Identities=16% Similarity=-0.034 Sum_probs=42.7
Q ss_pred HhHHHHHHHhHHHHHHHHhhcchhhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHH
Q 025643 79 QTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKES 158 (250)
Q Consensus 79 ~~yEd~fF~kiKegv~~A~ehP~~a~g~a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es 158 (250)
.-|+.+...-....+..-...+.++++.+++.-+.+.-.. .||++++-.-..+.-..+|+..+.+.-..+.
T Consensus 47 ~~~~~~~~~~~~~~~~~l~~y~~i~~~~a~~Li~Wa~yn~---------~Rf~~~~rr~~~~~~~~~elA~~f~l~~~~l 117 (138)
T PF13994_consen 47 LFYPQMSLGGFLSSLNTLQIYLLIALVNAVILILWAKYNR---------LRFRGRRRRRRPPPVSDEELARSFGLSPEQL 117 (138)
T ss_pred cccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhcchhhccCCCCCCHHHHHHHcCCCHHHH
Confidence 3344444444455566666667777776666644443222 3677666655444456667766666666666
Q ss_pred HHHH
Q 025643 159 KKLL 162 (250)
Q Consensus 159 ~KL~ 162 (250)
++++
T Consensus 118 ~~lr 121 (138)
T PF13994_consen 118 QQLR 121 (138)
T ss_pred HHHH
Confidence 6554
No 325
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.36 E-value=3.9e+02 Score=22.35 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=49.9
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHH
Q 025643 145 NELNLSGELMKKESKKLLERAALAEKEMIRGETEL--KNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEV 222 (250)
Q Consensus 145 ~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkL--r~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEV 222 (250)
.+|...+..++.|.+.|.......+.|+..=.+.+ -+...+|..+-..+-.+|.+-..|.+.-..++..|-.++..+-
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~ 154 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEY 154 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 33333344444444444444333333333222222 2445666777777777777777777766667776766666666
Q ss_pred HHHHHHHHHHHH
Q 025643 223 ASMASLLKRQRA 234 (250)
Q Consensus 223 As~AS~lK~qR~ 234 (250)
...-...++-|+
T Consensus 155 ~~~~k~w~kRKr 166 (169)
T PF07106_consen 155 KKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHH
Confidence 666666555543
No 326
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=26.32 E-value=5.9e+02 Score=24.48 Aligned_cols=10 Identities=40% Similarity=0.448 Sum_probs=4.5
Q ss_pred chhhHHHHHH
Q 025643 100 PAAATGVALT 109 (250)
Q Consensus 100 P~~a~g~a~~ 109 (250)
|..++.++=+
T Consensus 133 P~~Aa~i~n~ 142 (498)
T TIGR03007 133 PELAKDVVQT 142 (498)
T ss_pred HHHHHHHHHH
Confidence 5444444433
No 327
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=26.09 E-value=1.1e+02 Score=25.92 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=29.0
Q ss_pred hhHHHHhhhhh-cccccccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 025643 10 DSIQRLCHSLS-SFFPTQLFHLSSNPPGFWFGLVSSIFLLILVYLIF 55 (250)
Q Consensus 10 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (250)
-.+||..++.+ +.++ |.--+|...|.|++..+..+|+.|.++
T Consensus 59 PAL~Rw~~a~~~~~y~----~FRpTPktsllg~~~~v~P~i~~~~~~ 101 (125)
T PF07225_consen 59 PALQRWAYARAVNIYE----YFRPTPKTSLLGLGFGVVPLIFYYYVL 101 (125)
T ss_pred hHHHHHHHHHHhCccc----ccccCchHHHHHHHHHHHHHHHHHhhh
Confidence 35788876666 4443 566689999999887666666655544
No 328
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.06 E-value=1.8e+02 Score=29.78 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=16.6
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHH
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKL 161 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL 161 (250)
.+-+...+.+.+||.+.++.+++|.+.+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~ 95 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVL 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666665533
No 329
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=26.02 E-value=8.6e+02 Score=26.31 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=71.7
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHhcccC
Q 025643 138 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAG-------NQVQRLAKQVYKVETQAADLMEGLREI 210 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG-------~qIq~L~ssvyK~E~~A~gL~d~LR~L 210 (250)
..-.....++...++.++.|-.+|+....-++.++..=+.+|+.+- .+|...-.+-..+|.+-.+.....+.+
T Consensus 585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~l 664 (769)
T PF05911_consen 585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESL 664 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455577777888888888887777777777766666666554 445555556666677666666666555
Q ss_pred Cch------hHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 211 PGR------EALKLRAEVASMASLLKRQRAMMDKQIMK 242 (250)
Q Consensus 211 Psr------eA~~LRsEVAs~AS~lK~qR~aL~k~l~K 242 (250)
=++ |+-.++..|.++-.++-++|..=...+.|
T Consensus 665 e~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~k 702 (769)
T PF05911_consen 665 ETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAK 702 (769)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhH
Confidence 544 78889999999999998888765544433
No 330
>PF15463 ECM11: Extracellular mutant protein 11
Probab=26.02 E-value=1.6e+02 Score=24.50 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=33.9
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 025643 212 GREALKLRAEVASMASLLKRQRAMMDKQIMKISELGVSV 250 (250)
Q Consensus 212 sreA~~LRsEVAs~AS~lK~qR~aL~k~l~KIs~~GV~V 250 (250)
++.+..|=++|+.-+..|..+...|++.+.||-.-|-.|
T Consensus 100 r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk~~G~ei 138 (139)
T PF15463_consen 100 RKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMKEGGKEI 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345667888999999999999999999999999998765
No 331
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=25.98 E-value=4.8e+02 Score=28.16 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=53.9
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhH-HHHHHHHH
Q 025643 148 NLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKL-RAEVASMA 226 (250)
Q Consensus 148 r~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~L-RsEVAs~A 226 (250)
|...+..|.-..||+++..--|+|+++-+.++..|.+. .+-|+=..||.++--+| |.|+|...
T Consensus 342 rgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~----------------~~~~e~ddiPmAqRkRFTRvEMaRVL 405 (832)
T KOG2077|consen 342 RGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK----------------AKDDEDDDIPMAQRKRFTRVEMARVL 405 (832)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hcccccccccHHHHhhhHHHHHHHHH
Confidence 44444455556789999999999999999998887665 23455678999888777 77776543
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025643 227 SLLKRQRAMMDKQIMKI 243 (250)
Q Consensus 227 S~lK~qR~aL~k~l~KI 243 (250)
-+|+.-..+||..
T Consensus 406 ----MeRNqYKErLMEL 418 (832)
T KOG2077|consen 406 ----MERNQYKERLMEL 418 (832)
T ss_pred ----HHHhHHHHHHHHH
Confidence 3566666666554
No 332
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=25.92 E-value=1.2e+02 Score=23.77 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=14.3
Q ss_pred CCCchhHHHHHHHHHHH
Q 025643 33 NPPGFWFGLVSSIFLLI 49 (250)
Q Consensus 33 ~~~~~~~~~~~~~~~~~ 49 (250)
+.|-||.++++.+|+++
T Consensus 8 kNk~fw~ali~al~l~~ 24 (78)
T TIGR01598 8 KNKATLIALLGALFLAI 24 (78)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 34679999999999984
No 333
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=25.82 E-value=3.9e+02 Score=22.19 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=22.2
Q ss_pred HHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH
Q 025643 120 RFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAE 169 (250)
Q Consensus 120 RfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE 169 (250)
-|.|-+.+.+-+-.|..+.. ...++++++.|.++.+.....-+
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~-------~~~~l~lLq~e~~~~e~~le~d~ 61 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAA-------NLHQLELLQEEIEKEEAALERDY 61 (160)
T ss_pred cccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665555555554 44455555555555444333333
No 334
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.72 E-value=3e+02 Score=28.21 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=10.7
Q ss_pred HHHhHHHHHHhHHhhHHHHHHH
Q 025643 140 AEKNVNELNLSGELMKKESKKL 161 (250)
Q Consensus 140 Ae~kV~eLr~svdl~k~Es~KL 161 (250)
.+.++.+-+.+.+.+.+++++|
T Consensus 67 nqSALteqQ~kasELEKqLaaL 88 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555444
No 335
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=25.69 E-value=6.2e+02 Score=24.51 Aligned_cols=98 Identities=13% Similarity=0.151 Sum_probs=68.4
Q ss_pred hhhHHHHHHHhHhhccchhHHHHHHhhhhhccH-HHHHHHH--------------HHhHHHHHHhHHhhHHHHHHHHHHH
Q 025643 101 AAATGVALTAGLLFMRGPRRFLFRHTFGRLRSE-EAMFVRA--------------EKNVNELNLSGELMKKESKKLLERA 165 (250)
Q Consensus 101 ~~a~g~a~~agllll~gPRRfLyr~TlgRF~SE-Eall~~A--------------e~kV~eLr~svdl~k~Es~KL~era 165 (250)
++..|++++..++++|-+=+..+.+.+.-..++ ...++.. -.+.+.|+..+..+.+...+++-.+
T Consensus 199 ~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l 278 (459)
T PF10337_consen 199 LIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRNFLQSSEPSDEFDAKSLKKLKATKAKLRALYAKLQAAL 278 (459)
T ss_pred HHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999999988776666555433322 1112211 1355788888888889999999999
Q ss_pred HHHHHHHHchH---HHHHHHHHHHHHHHHHHHHHHh
Q 025643 166 ALAEKEMIRGE---TELKNAGNQVQRLAKQVYKVET 198 (250)
Q Consensus 166 a~AE~Em~RGr---tkLr~aG~qIq~L~ssvyK~E~ 198 (250)
.-+--|+-.|+ .+|+.-.+-++++...+.....
T Consensus 279 ~~~~~Eis~grl~~~Dl~~i~~~lr~l~~~~~gL~~ 314 (459)
T PF10337_consen 279 RFLKLEISYGRLSPDDLKPIFSLLRSLMIPLSGLSS 314 (459)
T ss_pred HHHhhhHeeecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 5666666777777665555544
No 336
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=25.67 E-value=1.4e+02 Score=22.34 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=17.2
Q ss_pred hHHHHHHhHHhhHHHHHHHHHH
Q 025643 143 NVNELNLSGELMKKESKKLLER 164 (250)
Q Consensus 143 kV~eLr~svdl~k~Es~KL~er 164 (250)
+|.||..-|.+++.|+.+++..
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAA 43 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888887643
No 337
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=25.64 E-value=3.8e+02 Score=22.08 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=15.9
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHH
Q 025643 140 AEKNVNELNLSGELMKKESKKLLERA 165 (250)
Q Consensus 140 Ae~kV~eLr~svdl~k~Es~KL~era 165 (250)
++...++++..+...+.|.++..+.+
T Consensus 57 a~~~~~e~e~~l~~Ar~eA~~~~~~a 82 (141)
T PRK08476 57 VSEIEHEIETILKNAREEANKIRQKA 82 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666667777766665433
No 338
>PLN02320 seryl-tRNA synthetase
Probab=25.60 E-value=6.6e+02 Score=25.75 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=41.5
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHhcccCCc
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELK----NAGNQVQRLAKQVYKVETQAADLMEGLREIPG 212 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr----~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPs 212 (250)
+-..+.+..++.+.+|.+++|..++-+.+.. +.-.....+|+ +-+.+|..+......+|.+-..++..|--+|.
T Consensus 95 l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~--~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h 172 (502)
T PLN02320 95 VLELYENMLALQKEVERLRAERNAVANKMKG--KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTH 172 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3444555666666777777776666555533 11112233443 34445566666666666666666666666654
Q ss_pred h
Q 025643 213 R 213 (250)
Q Consensus 213 r 213 (250)
.
T Consensus 173 ~ 173 (502)
T PLN02320 173 P 173 (502)
T ss_pred c
Confidence 4
No 339
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=25.56 E-value=3.5e+02 Score=21.56 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=47.6
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHH---HHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHhcc
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERA---ALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAA-----DLMEGLR 208 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~era---a~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~-----gL~d~LR 208 (250)
+....++.+...+++.......++|.+.+ ..+-++.++=...+|+.+.+-+.-++.+-|.+.-|. ++.|.||
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~d~Ca~~~~P~~V~d~L~ 106 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTALKDDPCANTAVPDAVIDSLR 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCHHHHHHHH
Confidence 55566667777777777777777775433 234455666667777777777777777777665543 3555555
Q ss_pred cC
Q 025643 209 EI 210 (250)
Q Consensus 209 ~L 210 (250)
.|
T Consensus 107 ~~ 108 (110)
T PF10828_consen 107 RL 108 (110)
T ss_pred Hh
Confidence 43
No 340
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=25.53 E-value=4.9e+02 Score=23.27 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=25.5
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 189 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L 189 (250)
+..+++.+..++..++.+..+.+.++.....++.++...+.++..+..++++.
T Consensus 82 l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~ 134 (334)
T TIGR00998 82 LAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRR 134 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44444444444444444444444444444444445555555555555544443
No 341
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=25.24 E-value=7.2e+02 Score=25.08 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=15.1
Q ss_pred hhHHHHhhhhhcccccccccccC
Q 025643 10 DSIQRLCHSLSSFFPTQLFHLSS 32 (250)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~ 32 (250)
+.|-.|-+.+-.-||.||=.|..
T Consensus 215 ~~iP~l~~~~~~~~P~ql~el~~ 237 (569)
T PRK04778 215 EEIPELLKELQTELPDQLQELKA 237 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Confidence 44555666677778888776654
No 342
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=25.22 E-value=75 Score=21.03 Aligned_cols=16 Identities=25% Similarity=0.870 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHH
Q 025643 37 FWFGLVSSIFLLILVY 52 (250)
Q Consensus 37 ~~~~~~~~~~~~~~~~ 52 (250)
-|.|++.++++++..+
T Consensus 9 ~W~Gl~~g~~l~~~~~ 24 (37)
T PF13706_consen 9 RWLGLILGLLLFVIFL 24 (37)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4999999988776543
No 343
>smart00721 BAR BAR domain.
Probab=25.17 E-value=4.1e+02 Score=22.29 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=39.4
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHH--------HHHHHHHHHchHHHHHHHHHHHHHHHHHHHHH
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLER--------AALAEKEMIRGETELKNAGNQVQRLAKQVYKV 196 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~er--------aa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~ 196 (250)
.-++.+-++....+...|..++..+++... +..||+||..-+.+......++.......+..
T Consensus 134 ~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~ 203 (239)
T smart00721 134 KEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVEELPQLVAS 203 (239)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677778888888888888887777543 33466666666666665555555544444433
No 344
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=25.07 E-value=3.9e+02 Score=22.01 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=13.4
Q ss_pred CchhHHHHHHHHHHHHHHHH
Q 025643 35 PGFWFGLVSSIFLLILVYLI 54 (250)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~ 54 (250)
+-||..+...||+++++|+.
T Consensus 3 ~~~w~~i~f~i~l~~l~~~~ 22 (159)
T PRK09173 3 ATFWAFVGLVLFLALVVYLK 22 (159)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 45787777677777766653
No 345
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=24.79 E-value=4.6e+02 Score=22.68 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=74.0
Q ss_pred hhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHH-Hh---HHhhHHHHHHHHHHHHHHHHHHHchHHHHH--HHHHHH
Q 025643 113 LFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELN-LS---GELMKKESKKLLERAALAEKEMIRGETELK--NAGNQV 186 (250)
Q Consensus 113 lll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr-~s---vdl~k~Es~KL~eraa~AE~Em~RGrtkLr--~aG~qI 186 (250)
+++|-.|.=++ +.-..=+.+++.++.-+..+. -. .+.++.+..++.+...-+=+++..+-..|+ .-.+.+
T Consensus 74 fitP~dReDi~----~L~~~lD~I~D~i~~~a~~l~l~~~~~~~~l~~~~~~l~~~i~~~~~~l~~av~~l~~~~~~~~i 149 (216)
T TIGR00153 74 AFLPNDRRDLL----ELAELLDEILDSLEHAAMLYELRKFEFPEELRDEFLLVLKITVDMIQHLHRVVEVIELETDLSLA 149 (216)
T ss_pred ccCcCcHHHHH----HHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 37899999888 455556678888887777776 22 334478888888888888888888877753 223678
Q ss_pred HHHHHHHHHHHhhHHHHHHhc------cc-CCchhHHhHHH
Q 025643 187 QRLAKQVYKVETQAADLMEGL------RE-IPGREALKLRA 220 (250)
Q Consensus 187 q~L~ssvyK~E~~A~gL~d~L------R~-LPsreA~~LRs 220 (250)
+..+..+.+.|+++-.+...+ .+ ++..+..+++.
T Consensus 150 ~~~~~~I~~lE~e~D~i~~~~~~~Lf~~e~~d~i~~i~~ke 190 (216)
T TIGR00153 150 NDIIKEIKDLEDEIDVMQIRIYKKLYNLEVSNPWEGKILCK 190 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 899999999999998766543 22 45555555553
No 346
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=24.67 E-value=1.3e+02 Score=22.00 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=20.8
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHH
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLE 163 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~e 163 (250)
..+.|+.+..+-.+.+|+++.++++++.
T Consensus 43 ~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 43 LLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3557777778888888888888877653
No 347
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.65 E-value=7.4e+02 Score=25.06 Aligned_cols=87 Identities=13% Similarity=0.266 Sum_probs=50.8
Q ss_pred hhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHH-------HHHHHHHHHHH---------H
Q 025643 127 FGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETE-------LKNAGNQVQRL---------A 190 (250)
Q Consensus 127 lgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtk-------Lr~aG~qIq~L---------~ 190 (250)
.-++......++.....++++...++...++-..+.+.+....++=++.|-+ |++..+.|++. .
T Consensus 364 ~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~ 443 (560)
T PF06160_consen 364 EERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYL 443 (560)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 3445555556666666666666666666666555555555444444444443 34444444222 4
Q ss_pred HHHHHHHhhHHHHHHhcccCCch
Q 025643 191 KQVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 191 ssvyK~E~~A~gL~d~LR~LPsr 213 (250)
.-.+.+......|.+.|.+.|--
T Consensus 444 ~~~~~~~~~i~~l~~~L~~~pin 466 (560)
T PF06160_consen 444 DYFFDVSDEIEELSDELNQVPIN 466 (560)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcC
Confidence 45666777778888888888865
No 348
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=24.63 E-value=4.4e+02 Score=22.42 Aligned_cols=21 Identities=10% Similarity=-0.295 Sum_probs=12.3
Q ss_pred HhHhhccchhHHHHHHhhhhh
Q 025643 110 AGLLFMRGPRRFLFRHTFGRL 130 (250)
Q Consensus 110 agllll~gPRRfLyr~TlgRF 130 (250)
..++++--=++|||.-..+-+
T Consensus 33 nflill~lL~~fl~kPI~~~l 53 (184)
T CHL00019 33 NLSVVLGVLIYFGKGVLSDLL 53 (184)
T ss_pred HHHHHHHHHHHHhHhHHHHHH
Confidence 344455555788886655544
No 349
>PRK09343 prefoldin subunit beta; Provisional
Probab=24.51 E-value=2.8e+02 Score=22.54 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=15.8
Q ss_pred HHHHHHHchHHHHHHHHHHHHHHHHHHHH
Q 025643 167 LAEKEMIRGETELKNAGNQVQRLAKQVYK 195 (250)
Q Consensus 167 ~AE~Em~RGrtkLr~aG~qIq~L~ssvyK 195 (250)
.-|+...+=+.++.+.-.+|+.+..+.|+
T Consensus 89 ~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 89 TLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33344444445555666666666666554
No 350
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=24.48 E-value=1e+03 Score=26.67 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHH--hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 176 ETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREAL--KLRAEVASMASLLKRQRAMMDKQIMK 242 (250)
Q Consensus 176 rtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~--~LRsEVAs~AS~lK~qR~aL~k~l~K 242 (250)
..|..+.-+|+.+-..++-++|+.=..|=|-|.++-...-. .==.+.+++-..++++-..++.++.+
T Consensus 444 L~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~ 512 (980)
T KOG0980|consen 444 LRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEE 512 (980)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777777778888877777777776543221 12233455555555555555544443
No 351
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=24.41 E-value=6.3e+02 Score=24.12 Aligned_cols=39 Identities=10% Similarity=0.188 Sum_probs=23.4
Q ss_pred hcchhhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHH
Q 025643 98 EHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEK 142 (250)
Q Consensus 98 ehP~~a~g~a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~ 142 (250)
+.+....+++.+.|+++ +.+.==.|.-.=+-++...+..
T Consensus 156 ~~~~~~ial~~~~Gl~l------~i~~~g~Glv~iP~~l~~~~~~ 194 (471)
T PF04791_consen 156 SLLPFLIALSNFWGLFL------FIILLGYGLVAIPRDLWRSSNS 194 (471)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHhccHHHHHHHHHHhccc
Confidence 34666777777777776 3444445655445566655544
No 352
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=24.29 E-value=2.6e+02 Score=21.38 Aligned_cols=35 Identities=26% Similarity=0.166 Sum_probs=27.8
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025643 138 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEM 172 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em 172 (250)
..+-+...+|+..++-++.|.+.+.+.+.-|+.++
T Consensus 39 ~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 39 EELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555699999999999999998888888775
No 353
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=24.29 E-value=2.2e+02 Score=22.35 Aligned_cols=38 Identities=8% Similarity=0.029 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHhhHhhHHh
Q 025643 38 WFGLVSSIFLLILVYLIFSHSFLVLSMLLWQDFVLHGVSQYQT 80 (250)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~sqy~~ 80 (250)
|++.+.+++.+.+ +.++..++....++.++++ .+++|.
T Consensus 58 ~~~~~l~~lt~~l-~~~~~~~~~~~~~~~le~~----l~~~N~ 95 (118)
T PF10256_consen 58 IIENILGCLTLGL-SSLCFKTHYKRKLRELEKY----LEQLNE 95 (118)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 3444444433333 3344477888899999999 555555
No 354
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=24.22 E-value=6.7e+02 Score=24.40 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhHHHHHHhcc
Q 025643 187 QRLAKQVYKVETQAADLMEGLR 208 (250)
Q Consensus 187 q~L~ssvyK~E~~A~gL~d~LR 208 (250)
.+|-+++-+++..=..|-..|.
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4557777777776666666665
No 355
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=24.02 E-value=3.7e+02 Score=21.40 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=40.7
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHH
Q 025643 149 LSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASL 228 (250)
Q Consensus 149 ~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~ 228 (250)
.++..+..++..+++++.-++++-.+-.-.=++-..+|+.+.+.. ..-.. -.+.++++..+-.+
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~-------~~~~~---------~~~~~~~l~~~~~~ 66 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQ-------KSQRE---------DEELSEKLEKLEKE 66 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhcc---------chHHHHHHHHHHHH
Confidence 455666777777777777777665544333333333333333322 21111 35677888888888
Q ss_pred HHHHHHH
Q 025643 229 LKRQRAM 235 (250)
Q Consensus 229 lK~qR~a 235 (250)
+++.|.-
T Consensus 67 lk~~r~~ 73 (106)
T PF05837_consen 67 LKKSRQR 73 (106)
T ss_pred HHHHHHH
Confidence 8877653
No 356
>PF14163 SieB: Superinfection exclusion protein B
Probab=24.02 E-value=2.9e+02 Score=22.69 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=13.2
Q ss_pred ccccccccc-cC----CCCchhHHHHHH
Q 025643 22 FFPTQLFHL-SS----NPPGFWFGLVSS 44 (250)
Q Consensus 22 ~~~~~~~~~-~~----~~~~~~~~~~~~ 44 (250)
|.|..+... .. +-++.|.|++..
T Consensus 14 f~P~~~~~~l~l~~~~~~y~~~i~~~fl 41 (151)
T PF14163_consen 14 FLPESLLEWLNLDKFEIKYQPWIGLIFL 41 (151)
T ss_pred HCCHHHHHHhCcchHHHhcchHHHHHHH
Confidence 666655442 22 457788887543
No 357
>PF02944 BESS: BESS motif; InterPro: IPR004210 The BESS domain has been named after the three proteins that originally defined the domain: BEAF (Boundary element associated factor 32) [], Suvar(3)7 [] and Stonewall []). The BESS domain is 40 amino acid residues long and is predicted to be composed of three alpha helices, as such it might be related to the myb/SANT HTH domain. The BESS domain directs a variety of protein-protein interactions, including interactions with itself, with Dorsal, and with a TBP-associated factor. It is found in a single copy in Drosophila proteins and is often associated with the MADF domain [, , ]. Proteins known to contain a BESS domain include: Drosophila Boundary element associated factor 32 (BEAF-32). Drosophila Suppressor of variegation protein 3-7 (Su(var)3-7), which could play a role in chromosome condensation. Drosophila Ravus, which is homologous to the C-terminal part of Su(var)3-7 []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation. Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3). It functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. ; GO: 0003677 DNA binding
Probab=23.96 E-value=78 Score=20.80 Aligned_cols=27 Identities=15% Similarity=0.448 Sum_probs=23.1
Q ss_pred HHHHHhcccCCchhHHhHHHHHHHHHH
Q 025643 201 ADLMEGLREIPGREALKLRAEVASMAS 227 (250)
Q Consensus 201 ~gL~d~LR~LPsreA~~LRsEVAs~AS 227 (250)
-+++..++.+|.++-..+|.+|..+.-
T Consensus 9 ~Sl~p~~k~L~~~~k~~~k~~i~~ll~ 35 (37)
T PF02944_consen 9 LSLLPHMKRLPPKQKLKFKMKILQLLF 35 (37)
T ss_pred HHhHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 467888999999999999999987643
No 358
>PF12296 HsbA: Hydrophobic surface binding protein A; InterPro: IPR021054 Hydrophobic surface binding proteins are typically between 171 to 275 amino acids in length. Although the HsbA amino acid sequence suggests that HsbA may be hydrophilic, HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) surfaces in the presence of NaCl or CaCl2. When HsbA was adsorbed on the hydrophobic PBSA surfaces, it promoted PBSA degradation via the CutL1 polyesterase. CutL1 interacts directly with HsbA attached to the hydrophobic QCM electrode surface. These results suggest that when HsbA is adsorbed onto the PBSA surface, it recruits CutL1, and that when CutL1 is accumulated on the PBSA surface, it stimulates PBSA degradation []. This entry is also characterised by a antigenic cell wall galactomannoprotein in Aspergillus fumigatus, which is a protein of 284 amino acid residues. It contains a serine- and threonine-rich region for O glycosylation, a signal peptide, and a putative glycosylphosphatidyl inositol attachment signal sequence. Ultrastructural analysis showed that the protein is present in the cell walls of hyphae and conidia []. ; PDB: 3L1N_A.
Probab=23.80 E-value=3.4e+02 Score=20.90 Aligned_cols=107 Identities=12% Similarity=0.117 Sum_probs=77.8
Q ss_pred HHHHHHHHhHHHHHHhHHhhHH---HHHHHHHHHHHHHHHHHchHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHhc
Q 025643 135 AMFVRAEKNVNELNLSGELMKK---ESKKLLERAALAEKEMIRGETELKNAGN----QVQRLAKQVYKVETQAADLMEGL 207 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~---Es~KL~eraa~AE~Em~RGrtkLr~aG~----qIq~L~ssvyK~E~~A~gL~d~L 207 (250)
.-++....+|..|..+++.+.+ ..-.+......-...++.|..+..++.. +=..++..+..++.....+++.|
T Consensus 8 ~~i~~I~~~v~~l~~~i~~~~gg~~~~~~i~~~~~~l~~~i~~~~~~~~~~~~lt~~ds~~l~~~~~~l~~~i~~~l~~l 87 (124)
T PF12296_consen 8 SDINNISTAVTKLDTAIKAYNGGDLGALPILSASDALVSAIKQATTDVQASPPLTDEDSLALLQAVQTLQPDIQDALNAL 87 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHH--SS----HHHHHHHHHHHHHHHHHHHHTTT-----HHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4467788899999999998884 4578888888889999999998887543 45566777778888888888887
Q ss_pred ccCCch-hHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 208 REIPGR-EALKLRAEVASMASLLKRQRAMMDKQIM 241 (250)
Q Consensus 208 R~LPsr-eA~~LRsEVAs~AS~lK~qR~aL~k~l~ 241 (250)
..=-.. ++..+.+.|-.....+|.....|.+.|-
T Consensus 88 ~~Kk~~f~~~g~~~~v~~~L~~l~~~~~~l~~al~ 122 (124)
T PF12296_consen 88 IAKKPAFDAAGLCSVVRADLQDLKTASDALSDALV 122 (124)
T ss_dssp HHTHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 665444 7788888888888888888888877663
No 359
>PF13514 AAA_27: AAA domain
Probab=23.75 E-value=9.8e+02 Score=26.12 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHH---------HHHHHHHHHHH----------chHHHHHHHHHHH
Q 025643 126 TFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLL---------ERAALAEKEMI----------RGETELKNAGNQV 186 (250)
Q Consensus 126 TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~---------eraa~AE~Em~----------RGrtkLr~aG~qI 186 (250)
+...|+.-..-+..++++.++++.....+..+..+|+ .+....+.++. .|...+..+-.++
T Consensus 172 ~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~ 251 (1111)
T PF13514_consen 172 RAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFPEDGAERLEQLEEEL 251 (1111)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhHHHHHHhcccCCchhH-HhHHHHHHHHHHHHHHHHHHHHH
Q 025643 187 QRLAKQVYKVETQAADLMEGLREIPGREA-LKLRAEVASMASLLKRQRAMMDK 238 (250)
Q Consensus 187 q~L~ssvyK~E~~A~gL~d~LR~LPsreA-~~LRsEVAs~AS~lK~qR~aL~k 238 (250)
..+-..+-..+.....+...+..||.-+. +...++|..+.......+.....
T Consensus 252 ~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~d 304 (1111)
T PF13514_consen 252 AEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQD 304 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHH
No 360
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.62 E-value=7.6e+02 Score=24.84 Aligned_cols=110 Identities=19% Similarity=0.250 Sum_probs=68.2
Q ss_pred HHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHH---HHHHHchHHHHHHHH--------HHHHHHH
Q 025643 122 LFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALA---EKEMIRGETELKNAG--------NQVQRLA 190 (250)
Q Consensus 122 Lyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~A---E~Em~RGrtkLr~aG--------~qIq~L~ 190 (250)
+|-.|=|.-+-=|.++...+.+-.-|+.++|.++.|...-+|+...- =+|+.+=...|.+.- .-|..==
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ 200 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQ 200 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHH
Confidence 66778888888899999999988889999999888875554444332 123344444443221 1122222
Q ss_pred HHHHHHHhhHHHHHHhcc-----------cCCchhHHhHHHHHHHHHHHHHH
Q 025643 191 KQVYKVETQAADLMEGLR-----------EIPGREALKLRAEVASMASLLKR 231 (250)
Q Consensus 191 ssvyK~E~~A~gL~d~LR-----------~LPsreA~~LRsEVAs~AS~lK~ 231 (250)
--|.|.|++..+||-.+| .+|+.+.-.=+.-..+|.|++|+
T Consensus 201 ~yI~~LEsKVqDLm~EirnLLQle~~~~e~~p~~~~~~s~~v~~ql~selkk 252 (401)
T PF06785_consen 201 AYIGKLESKVQDLMYEIRNLLQLESDMKESMPSTPSPSSQDVPKQLVSELKK 252 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchhhhhHHHHHHHHHH
Confidence 346788899988876554 45666543333444556666655
No 361
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=23.62 E-value=6e+02 Score=23.60 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=53.7
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCch
Q 025643 145 NELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 145 ~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsr 213 (250)
..+.+.++....+..+|.++...=.+.|..-...|.++.+.+..+..+..+.-....+-++.|+....+
T Consensus 229 ~~~~~na~~I~~~~~~l~~~~~~~~~~~~~l~k~l~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 297 (304)
T PF02646_consen 229 EAQNKNAEEIAELAGKLYDRFGKFVEHLEKLGKSLDKAVKSYNKAVGSLEKRVGNIARRIEKLKELGAK 297 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcchh
Confidence 445566677777778888888888888888888888888999888888888888777777777765443
No 362
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.54 E-value=7.7e+02 Score=24.86 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=59.9
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHH---HHHHH-------------HHHHHHHHhh
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGN---QVQRL-------------AKQVYKVETQ 199 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~---qIq~L-------------~ssvyK~E~~ 199 (250)
-++..+.+.+++...++.++++-.++.+....-+++-...+.+|..-.. .+++. ..-...++..
T Consensus 377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~ 456 (569)
T PRK04778 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDE 456 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 3566666666666666666666666665555544444444443333322 33322 2223455677
Q ss_pred HHHHHHhcccCCch-hHHh-HHHHHHHHHHHHHHHHHHHHHHH
Q 025643 200 AADLMEGLREIPGR-EALK-LRAEVASMASLLKRQRAMMDKQI 240 (250)
Q Consensus 200 A~gL~d~LR~LPsr-eA~~-LRsEVAs~AS~lK~qR~aL~k~l 240 (250)
...|.+.|..-|-- +|.. .=.++..-...+..+..-|.+..
T Consensus 457 i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a 499 (569)
T PRK04778 457 IEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENA 499 (569)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888886655 6666 55566666666666666555443
No 363
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=23.46 E-value=4.5e+02 Score=22.08 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=22.5
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHH--------HHHHHHHHHHHHchHHHHHHHHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKL--------LERAALAEKEMIRGETELKNAGNQVQ 187 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL--------~eraa~AE~Em~RGrtkLr~aG~qIq 187 (250)
...|+.+..+...-.+..++|+..+ .++...-.++++.+..+|.+.-.+++
T Consensus 45 ~~~ae~~~~~~~~~a~~~s~~~a~~~~~~~~~ik~~v~~~~e~~q~~~~~l~~ei~~~~ 103 (115)
T COG4980 45 FELAEDKGTDILMIADKLSKESAETLKDQGGEIKESVKKWKEDIQPEIERLKSEIEDLQ 103 (115)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Confidence 3444444444444444444443332 34444445555555444444444443
No 364
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=23.39 E-value=5.6e+02 Score=27.46 Aligned_cols=110 Identities=18% Similarity=0.263 Sum_probs=62.1
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHH------HHHHHHHHHHhhHHHHHHhccc
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQ------RLAKQVYKVETQAADLMEGLRE 209 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq------~L~ssvyK~E~~A~gL~d~LR~ 209 (250)
++++-+.-..+.+.-++-.+.|.++|+++--.-..++..-++..-.-|.-+. .+++-|.+-+-.=.+-+..|.+
T Consensus 90 Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~iVpp~lI~~I~~g~vne~~f~~~Lee 169 (683)
T KOG1961|consen 90 VLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDLIVPPELIKTIVDGDVNEPEFLEALEE 169 (683)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccccCCHHHHHHHHcCCCCchHHHHHHHH
Confidence 3333444444444445555555555555544444444444444444444443 3466666665555577777777
Q ss_pred CCch-hHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHhhc
Q 025643 210 IPGR-EALKLRAEVASMASLLKRQRAMMD----KQIMKISEL 246 (250)
Q Consensus 210 LPsr-eA~~LRsEVAs~AS~lK~qR~aL~----k~l~KIs~~ 246 (250)
|-.+ ...++-..+-++.+ +|..+..|| |+|.||-+|
T Consensus 170 L~~Kl~~v~~dq~~k~a~a-~~Dv~~lLdkLR~KAi~kir~~ 210 (683)
T KOG1961|consen 170 LSHKLKLVELDQSNKDAKA-LKDVEPLLDKLRLKAIEKIREF 210 (683)
T ss_pred HHHHHHhhhhhhhccchhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 7776 55555555555555 777777777 677777665
No 365
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=23.38 E-value=4.1e+02 Score=23.12 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=22.1
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHH---HHHHHHHHHHHHchHHHHHHHHHHHH
Q 025643 138 VRAEKNVNELNLSGELMKKESKKL---LERAALAEKEMIRGETELKNAGNQVQ 187 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~KL---~eraa~AE~Em~RGrtkLr~aG~qIq 187 (250)
..++.++..++..++..+.+.+++ .+.-...++++..-+.++.++..+++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~l~ 119 (322)
T TIGR01730 67 QAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLE 119 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555544443333 22333344444444444444444443
No 366
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=23.35 E-value=5.3e+02 Score=22.88 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=27.1
Q ss_pred chhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHH
Q 025643 117 GPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLL 162 (250)
Q Consensus 117 gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~ 162 (250)
-=.+|+|....+-+..=+..+..--...++++...+.+.++.++.+
T Consensus 69 lL~k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L 114 (204)
T PRK09174 69 FMSRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQEL 114 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777766666655555555555555556655555555555443
No 367
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=23.23 E-value=5.6e+02 Score=30.55 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=68.6
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccC
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI 210 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~L 210 (250)
+-+++.+-..++++...+..+..|.+.......-.|+++..-.+.++.--+|++.+-..+.+.-+++.-|++.|+++
T Consensus 425 ~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~ 501 (1822)
T KOG4674|consen 425 APILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDEL 501 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888888999999999999999999999999999999999999999999999999998888877655
No 368
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=23.12 E-value=85 Score=22.81 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 025643 37 FWFGLVSSIFLLILVYLIFSH 57 (250)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~ 57 (250)
.||-+|+-||+++++-+..-|
T Consensus 2 ~~~~iV~i~iv~~lLg~~I~~ 22 (50)
T PF12606_consen 2 IAFLIVSIFIVMGLLGLSICT 22 (50)
T ss_pred eehHHHHHHHHHHHHHHHHHH
Confidence 588899888887776554433
No 369
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=23.11 E-value=59 Score=33.87 Aligned_cols=34 Identities=38% Similarity=0.642 Sum_probs=26.4
Q ss_pred hcccccccccccCCCCchhHHHHHHHHHHHHHHHHHhh
Q 025643 20 SSFFPTQLFHLSSNPPGFWFGLVSSIFLLILVYLIFSH 57 (250)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (250)
.-+||....-+++.|.+|||.++. ++++|++|.-
T Consensus 428 ~~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 461 (602)
T PRK09548 428 ALGFPPILQGLVGSKSAFFFVLLA----LALVYMIFAS 461 (602)
T ss_pred hhhhhhHhhhhhccchhHHHHHHH----HHHHHHHHHH
Confidence 346888888899999999998765 4568888843
No 370
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.06 E-value=4.6e+02 Score=22.07 Aligned_cols=48 Identities=6% Similarity=0.070 Sum_probs=26.7
Q ss_pred hHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHH
Q 025643 111 GLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKES 158 (250)
Q Consensus 111 gllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es 158 (250)
.++++--=.+|+|.....-+..=+..+...-.+.++.+...+.+..|.
T Consensus 28 Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~ 75 (175)
T PRK14472 28 FVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKN 75 (175)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444467888888777766555555554444444444444443333
No 371
>PLN02829 Probable galacturonosyltransferase
Probab=22.96 E-value=3.1e+02 Score=29.13 Aligned_cols=91 Identities=16% Similarity=0.107 Sum_probs=51.8
Q ss_pred HHHHHHhHHHHHHHHhhcchhhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHH----
Q 025643 82 EDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKE---- 157 (250)
Q Consensus 82 Ed~fF~kiKegv~~A~ehP~~a~g~a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~E---- 157 (250)
=|.....+||-+.+|+..|.|+-.-+-.--.--|+.-.+= -.+.+|--.+...|=..+..+++.|.+.+...|.-
T Consensus 181 ~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e-~~r~l~~a~~d~~lp~~~~~~~~~m~~~i~~ak~~~~d~ 259 (639)
T PLN02829 181 PDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKE-VQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQMQDDC 259 (639)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH-HHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHhcccCH
Confidence 4788999999999999998766533322211111111111 13333333333444455777777777776655433
Q ss_pred ---HHHHHHHHHHHHHHHH
Q 025643 158 ---SKKLLERAALAEKEMI 173 (250)
Q Consensus 158 ---s~KL~eraa~AE~Em~ 173 (250)
.+||.+-+...|+++.
T Consensus 260 ~~~~~KLr~~l~~~Ee~~~ 278 (639)
T PLN02829 260 SIVVKKLRAMLHSAEEQLR 278 (639)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666666554
No 372
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.94 E-value=6.4e+02 Score=23.74 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q 025643 228 LLKRQRAMMDKQIMKISELGV 248 (250)
Q Consensus 228 ~lK~qR~aL~k~l~KIs~~GV 248 (250)
.++.|.....+.+.++.+.+|
T Consensus 117 sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 117 SLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHhcCc
Confidence 344444444555555554443
No 373
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=22.70 E-value=4.8e+02 Score=22.15 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=9.4
Q ss_pred HhHHHHHHHHHHHHH
Q 025643 216 LKLRAEVASMASLLK 230 (250)
Q Consensus 216 ~~LRsEVAs~AS~lK 230 (250)
.++|.|++++|-++.
T Consensus 141 ~~l~~~i~~lA~~~a 155 (184)
T PRK13455 141 KAVRDRAVSVAVAAA 155 (184)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346777777766543
No 374
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=22.69 E-value=3.7e+02 Score=25.13 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=28.9
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHH---HHHHHHHHHHHHHchHHHHHHHHHHHHHH
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKK---LLERAALAEKEMIRGETELKNAGNQVQRL 189 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~K---L~eraa~AE~Em~RGrtkLr~aG~qIq~L 189 (250)
-+..|++.++..+...++.+.+.++ |.++=+..+.++..-++++..|..+++..
T Consensus 100 ~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~a~a~~~~a 156 (385)
T PRK09859 100 ELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVA 156 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655555555544433 34444555566666666665555544433
No 375
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=22.44 E-value=3.1e+02 Score=20.01 Aligned_cols=41 Identities=22% Similarity=0.168 Sum_probs=19.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH
Q 025643 151 GELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK 191 (250)
Q Consensus 151 vdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s 191 (250)
.++-....+++.+-....-.++..-+.++++...++..+..
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~ 80 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLA 80 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333344444444444444555555555555555555543
No 376
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=22.37 E-value=1.1e+03 Score=26.08 Aligned_cols=84 Identities=26% Similarity=0.267 Sum_probs=41.1
Q ss_pred hhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 025643 126 TFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLME 205 (250)
Q Consensus 126 TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d 205 (250)
.-+...+++....+.+.+.++++..++.++.+..-+.+.....+.+...=..++.....+++++...+.+.+..-..+-.
T Consensus 812 ~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~ 891 (1163)
T COG1196 812 LERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE 891 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555554444444444444444444444555555555555555555544444
Q ss_pred hccc
Q 025643 206 GLRE 209 (250)
Q Consensus 206 ~LR~ 209 (250)
.|++
T Consensus 892 ~l~~ 895 (1163)
T COG1196 892 ELRE 895 (1163)
T ss_pred HHHH
Confidence 4443
No 377
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=22.24 E-value=4.7e+02 Score=24.48 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=14.3
Q ss_pred HHHHHhHHhhHHHHHHHHHH
Q 025643 145 NELNLSGELMKKESKKLLER 164 (250)
Q Consensus 145 ~eLr~svdl~k~Es~KL~er 164 (250)
+||++..+..+.|.+.|++.
T Consensus 2 ~el~~~~~~~~~~~r~l~~~ 21 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLDK 21 (378)
T ss_pred hhHHHHHHHHHHHHHHHHhh
Confidence 56777777777777777763
No 378
>PRK08124 flagellar motor protein MotA; Validated
Probab=22.15 E-value=2.7e+02 Score=25.56 Aligned_cols=57 Identities=7% Similarity=0.119 Sum_probs=38.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHhhHhhHHhHHHHHHHhHHHHHH--HHhhcchhhH
Q 025643 35 PGFWFGLVSSIFLLILVYLIFSHSFLVLSMLLWQDFVLHGVSQYQTYEDAFFSKVKDELV--SAREHPAAAT 104 (250)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~sqy~~yEd~fF~kiKegv~--~A~ehP~~a~ 104 (250)
||-|-.|++..+-+++-|++|.. +- .+ ......-|-.+..-|+||+. ..-+||.+.-
T Consensus 181 ~gIa~ALitT~yGl~vA~~~~~P--ia---~k--------l~~~~~~e~~~~~~i~egi~~i~~G~~P~~~~ 239 (263)
T PRK08124 181 HAISAAFVATLLGIFTGYVLWHP--FA---NK--------LKRKSKEEIELKYIIIEGVLAIQEGNAPRVIE 239 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HH---HH--------HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 78899999999888888775432 11 22 33445556677777899998 4445676654
No 379
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.14 E-value=3.3e+02 Score=24.21 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=12.2
Q ss_pred HHHHHHHchHHHHHHHHHHHHHHHHH
Q 025643 167 LAEKEMIRGETELKNAGNQVQRLAKQ 192 (250)
Q Consensus 167 ~AE~Em~RGrtkLr~aG~qIq~L~ss 192 (250)
..|.|+-+=+.++.+...|++.|..+
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444433
No 380
>COG2009 SdhC Succinate dehydrogenase/fumarate reductase, cytochrome b subunit [Energy production and conversion]
Probab=22.04 E-value=4.5e+02 Score=21.59 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=33.7
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHhhhhHhhHhhHHhHHHHHHHhH
Q 025643 31 SSNPPGFWFGLVSSIFLLILVYLIFSHSFLVLS-MLLWQDFVLHGVSQYQTYEDAFFSKV 89 (250)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lq~~~~~~~sqy~~yEd~fF~ki 89 (250)
-.+|+++|.-.+=+|--+++.|.++-|-++..+ +.+.+.+ +++...|++-...++.++
T Consensus 12 ~~~~~~~~~silHRitGv~l~~Fl~~hil~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 70 (132)
T COG2009 12 YRPPITMYASILHRISGVILAFFLFVHILLASSWLAGSASF-NAAFEFYHALLGSFIVKL 70 (132)
T ss_pred eecchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHhccccHHHHH
Confidence 467788888888777777776556777666532 2222222 344555555444455543
No 381
>PRK15396 murein lipoprotein; Provisional
Probab=22.01 E-value=3.9e+02 Score=20.90 Aligned_cols=38 Identities=5% Similarity=0.187 Sum_probs=16.6
Q ss_pred HHHHHH--HhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 025643 136 MFVRAE--KNVNELNLSGELMKKESKKLLERAALAEKEMI 173 (250)
Q Consensus 136 ll~~Ae--~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~ 173 (250)
++.+|- .+|+.|...|+.++.+...+..-+..+..+.+
T Consensus 17 LLaGCAs~~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~ 56 (78)
T PRK15396 17 LLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQ 56 (78)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 24444444444444444444444433333333
No 382
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=21.75 E-value=4.6e+02 Score=27.70 Aligned_cols=88 Identities=23% Similarity=0.281 Sum_probs=46.0
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHH--HHHHHHHHH-----------HHHhhHHHHHHh
Q 025643 140 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQ--VQRLAKQVY-----------KVETQAADLMEG 206 (250)
Q Consensus 140 Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~q--Iq~L~ssvy-----------K~E~~A~gL~d~ 206 (250)
.+.+..+|..+-+.++.|+..- ..+|.++.+-+.+|-||||= |-.++..+. .-.--|.-|++.
T Consensus 340 V~eRTadL~~~n~~l~~EIaer----~~ae~~LR~~QdeLvQA~kLA~LGQmSA~iaHElNQPLaaiRt~adna~~lLer 415 (603)
T COG4191 340 VEERTADLTRANARLQAEIAER----EQAEAALRRAQDELVQAGKLAALGQMSAGIAHELNQPLAAIRTYADNARLLLER 415 (603)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHc
Confidence 3444445555555555555433 56788888888888888861 222221111 112234445554
Q ss_pred cccCCchhHHhHHHH----HHHHHHHHHH
Q 025643 207 LREIPGREALKLRAE----VASMASLLKR 231 (250)
Q Consensus 207 LR~LPsreA~~LRsE----VAs~AS~lK~ 231 (250)
=|.=.-++-++..++ ++++++.+|.
T Consensus 416 gr~e~a~~Nl~~I~~LteRma~It~~Lk~ 444 (603)
T COG4191 416 GRTEEARENLERISALTERMAAITAHLKS 444 (603)
T ss_pred CChHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455554444 4556666654
No 383
>PRK10869 recombination and repair protein; Provisional
Probab=21.73 E-value=8.5e+02 Score=24.67 Aligned_cols=76 Identities=11% Similarity=0.061 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhc-cHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHH-HHHHHHHHHH
Q 025643 119 RRFLFRHTFGRLR-SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQ-VQRLAKQVYK 195 (250)
Q Consensus 119 RRfLyr~TlgRF~-SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~q-Iq~L~ssvyK 195 (250)
|-+++++--+++- |.|.++...++--++| ..++....+.+.|+++...+++++..-..+|.+..++ ...+.+.+-+
T Consensus 304 Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL-~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~ 381 (553)
T PRK10869 304 RLSKQISLARKHHVSPEELPQHHQQLLEEQ-QQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITE 381 (553)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 384
>COG3447 Predicted integral membrane sensor domain [Signal transduction mechanisms]
Probab=21.73 E-value=4.5e+02 Score=25.49 Aligned_cols=57 Identities=12% Similarity=-0.035 Sum_probs=34.1
Q ss_pred HHHhhhH---HHHHHHHHhhhhHhhHhhHHhHHHHHHHhHHHHHHHHhhcchhhHHHHHH
Q 025643 53 LIFSHSF---LVLSMLLWQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALT 109 (250)
Q Consensus 53 ~~~~~~~---~~~~~~~lq~~~~~~~sqy~~yEd~fF~kiKegv~~A~ehP~~a~g~a~~ 109 (250)
+.|.|++ .-.+++.++.++...+-.-.--=...++++||++..+-.-+.+..-.+++
T Consensus 82 l~~~~~~l~~~~~~~n~leav~ga~L~r~ll~~~~~~~~L~d~l~f~v~ga~v~p~l~Ai 141 (308)
T COG3447 82 LLFSTSSLNMAITTINILEAVVGAVLLRKLLPWYNPLQNLQDWLRFLLGGAIVPPLLGAI 141 (308)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhcccchhHHHH
Confidence 4455555 23456777777766654444434445668999999776665554444443
No 385
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.60 E-value=5.6e+02 Score=26.33 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=11.2
Q ss_pred HHHHHHHchHHHHHHHHHHHHHHH
Q 025643 167 LAEKEMIRGETELKNAGNQVQRLA 190 (250)
Q Consensus 167 ~AE~Em~RGrtkLr~aG~qIq~L~ 190 (250)
.++.|+..-+..|++.-.+++.++
T Consensus 109 ~~~~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 109 SETQELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544444444443
No 386
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=21.59 E-value=5.6e+02 Score=22.52 Aligned_cols=92 Identities=23% Similarity=0.185 Sum_probs=41.3
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREAL 216 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~ 216 (250)
+..+|--.+-|++.+..+..++.+....++.+- +.-+...+++......+-+-|.+|..-++.=++==-++|+
T Consensus 19 ~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~-------a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al 91 (219)
T TIGR02977 19 LDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTI-------ADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAAL 91 (219)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444444444455555555554444443333332 2233344455555555555566655554433332234454
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 025643 217 KLRAEVASMASLLKRQRAM 235 (250)
Q Consensus 217 ~LRsEVAs~AS~lK~qR~a 235 (250)
.-+.+....+..++.+-..
T Consensus 92 ~~k~~~~~~~~~l~~~~~~ 110 (219)
T TIGR02977 92 IEKQKAQELAEALERELAA 110 (219)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333
No 387
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=21.57 E-value=4.3e+02 Score=23.46 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=28.4
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHc
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIR 174 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~R 174 (250)
+-+...++|++.++.+.+|.++|.++...=|+||.-
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888888888888888864
No 388
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.51 E-value=8.4e+02 Score=24.55 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 025643 229 LKRQRAMMDKQIMKISE 245 (250)
Q Consensus 229 lK~qR~aL~k~l~KIs~ 245 (250)
.-.|++.||++=.-|++
T Consensus 189 f~eq~~ml~kRQ~yI~~ 205 (401)
T PF06785_consen 189 FVEQHSMLDKRQAYIGK 205 (401)
T ss_pred cccchhhhHHHHHHHHH
Confidence 44577888877666665
No 389
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=21.50 E-value=3.3e+02 Score=19.84 Aligned_cols=53 Identities=9% Similarity=0.232 Sum_probs=26.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHc----hHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 025643 151 GELMKKESKKLLERAALAEKEMIR----GETELKNAGNQVQRLAKQVYKVETQAADL 203 (250)
Q Consensus 151 vdl~k~Es~KL~eraa~AE~Em~R----GrtkLr~aG~qIq~L~ssvyK~E~~A~gL 203 (250)
++.+.+-.++|........+|++. -..++-.|..+|..+-..+.++......+
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l 77 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSEL 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444432 34556666666666655555554444433
No 390
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=21.49 E-value=96 Score=28.19 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=14.7
Q ss_pred chhHH-HHHHHHHHHHHHHHHhh
Q 025643 36 GFWFG-LVSSIFLLILVYLIFSH 57 (250)
Q Consensus 36 ~~~~~-~~~~~~~~~~~~~~~~~ 57 (250)
+-||+ ++.-+||.+++|+|+--
T Consensus 200 ~g~f~wl~i~~~l~~~~Y~i~g~ 222 (268)
T PF09451_consen 200 WGFFTWLFIILFLFLAAYLIFGS 222 (268)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhh
Confidence 34665 45556677789999853
No 391
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=21.44 E-value=55 Score=25.43 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=18.4
Q ss_pred HHhcccCCchhHHhHHHHHHHHHH
Q 025643 204 MEGLREIPGREALKLRAEVASMAS 227 (250)
Q Consensus 204 ~d~LR~LPsreA~~LRsEVAs~AS 227 (250)
-+.+|+||+.++++|...+-.+..
T Consensus 78 ~eVIRqIP~Ee~l~l~~~l~e~~G 101 (107)
T PF03646_consen 78 GEVIRQIPPEELLDLAKRLRELVG 101 (107)
T ss_dssp -SEEEEE-HHHHHHHHHHHHHHHH
T ss_pred CcEEEeCCcHHHHHHHHHHHHHhc
Confidence 356899999999999988877653
No 392
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=21.26 E-value=6.3e+02 Score=23.01 Aligned_cols=14 Identities=43% Similarity=0.434 Sum_probs=5.9
Q ss_pred hHHhHHHHHHHHHH
Q 025643 214 EALKLRAEVASMAS 227 (250)
Q Consensus 214 eA~~LRsEVAs~AS 227 (250)
+++..|..+++...
T Consensus 137 ~~l~ar~~~akA~~ 150 (225)
T COG1842 137 EALKARKAAAKAQE 150 (225)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 393
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=21.23 E-value=6.1e+02 Score=22.79 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=26.3
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHH---HHHHHHHHHHHHchHHHHHHHHHHHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKL---LERAALAEKEMIRGETELKNAGNQVQRLA 190 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL---~eraa~AE~Em~RGrtkLr~aG~qIq~L~ 190 (250)
+..+++.++..+..++..+.+.++. .++=+..+.+|..-++++.++..++....
T Consensus 99 ~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~ 155 (327)
T TIGR02971 99 VAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEAL 155 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555554444444433 23334445555555555555555555543
No 394
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.20 E-value=8.8e+02 Score=24.91 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=22.3
Q ss_pred HHHHHHhhhhhccHHHHHHHHHHhH--HHHHHhHHhhHHHHHHHH
Q 025643 120 RFLFRHTFGRLRSEEAMFVRAEKNV--NELNLSGELMKKESKKLL 162 (250)
Q Consensus 120 RfLyr~TlgRF~SEEall~~Ae~kV--~eLr~svdl~k~Es~KL~ 162 (250)
.+..+....||++.|+.=.-.+... -+.+.-+|.+..+..+|.
T Consensus 17 ~~ir~~q~~r~~d~~~v~~~i~~d~~w~~~~~~ldeln~~~n~l~ 61 (455)
T KOG2509|consen 17 ELIRESQKKRFQDVEAVDEVIELDKEWIETRFELDELNKEKNKLN 61 (455)
T ss_pred HHHHHHHHHhhcCHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHhh
Confidence 3444444459999887655333332 333444455555544443
No 395
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=20.93 E-value=2.3e+02 Score=25.88 Aligned_cols=32 Identities=16% Similarity=0.016 Sum_probs=22.4
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHchHHHHH
Q 025643 149 LSGELMKKESKKLLERAALAEKEMIRGETELK 180 (250)
Q Consensus 149 ~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr 180 (250)
.++|.+++|+-+|++++.-|.++..-=+.+..
T Consensus 136 ~k~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~ 167 (192)
T COG5374 136 GKIDKMEADSTDLKARLRKAQILLEGLQKNQE 167 (192)
T ss_pred cchhhhhcchHHHHHHHhhhhHHHHHHHHHHH
Confidence 56788888888888888877766654444433
No 396
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.91 E-value=4.9e+02 Score=21.58 Aligned_cols=68 Identities=13% Similarity=0.096 Sum_probs=34.4
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLM 204 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~ 204 (250)
+..+-.....|...++....-+..|++-....|..+.+=--.|++=.+.++.+.+..-+-++.+.-++
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL 89 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVL 89 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 34444444444554444444455555555555555555555555555555555555555555544443
No 397
>PRK15081 glutathione ABC transporter permease GsiC; Provisional
Probab=20.91 E-value=4.5e+02 Score=24.39 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcchhhHHHHHHHhHhhccchhHHHHHHhhhh
Q 025643 89 VKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGR 129 (250)
Q Consensus 89 iKegv~~A~ehP~~a~g~a~~agllll~gPRRfLyr~TlgR 129 (250)
++..+.-..+.||+.++-+-+. ++|+.+|||.++.
T Consensus 192 ~R~~~~~~~~~dYV~~ArakGl------s~~~I~~rhilrn 226 (306)
T PRK15081 192 TRASFVEVLSEDYMRTARAKGV------SETWVVLKHGLRN 226 (306)
T ss_pred HHHHHHHHhccHHHHHHHHcCc------CcchhhHHHhHHh
Confidence 4556666666777777666554 4667777776653
No 398
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.89 E-value=3.8e+02 Score=25.28 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=23.1
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHc
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIR 174 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~R 174 (250)
..++..+++++.|+..++.+.+.+....+.-...+..|.+
T Consensus 57 ~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~ 96 (247)
T COG3879 57 KELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALED 96 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 5566667777777777776666666655333333333333
No 399
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.87 E-value=2.2e+02 Score=26.44 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=30.8
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHc
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIR 174 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~R 174 (250)
+|..+++.|++.-..+++++++|+.+++.-++++.+
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~ 212 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLER 212 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999998887776653
No 400
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=20.85 E-value=3.5e+02 Score=19.92 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=22.4
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 025643 140 AEKNVNELNLSGELMKKESKKLLERAALAEKE 171 (250)
Q Consensus 140 Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~E 171 (250)
-+.++++....+|.+.....+|+.+-+..|++
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~ 35 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKD 35 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777766665
No 401
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=20.80 E-value=6e+02 Score=24.90 Aligned_cols=71 Identities=21% Similarity=0.154 Sum_probs=55.7
Q ss_pred HHHHHHHHhhcchhhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHH
Q 025643 89 VKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALA 168 (250)
Q Consensus 89 iKegv~~A~ehP~~a~g~a~~agllll~gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~A 168 (250)
+|+-.+.|+..|..-.-+--++ +.-.++..-+.|+=.+++|.+--.-++|-.+|+.-|.|.+++++|...-
T Consensus 89 ~~~~~~~aa~Rplel~e~Ekvl---------k~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~L 159 (338)
T KOG3647|consen 89 HKESLMSAAQRPLELLEVEKVL---------KSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEAL 159 (338)
T ss_pred HHHHHHHHHcCCccHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888887655443322 3446777888999999999988888999999999999999999887653
No 402
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=20.70 E-value=5.6e+02 Score=25.20 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=6.9
Q ss_pred HHHHHhhcchhhH
Q 025643 92 ELVSAREHPAAAT 104 (250)
Q Consensus 92 gv~~A~ehP~~a~ 104 (250)
|...|..||....
T Consensus 285 g~~lA~~hplsil 297 (380)
T TIGR00261 285 GSILARGHPLTIL 297 (380)
T ss_pred HHHHHcCCHHHHH
Confidence 4456666665433
No 403
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=20.70 E-value=4.8e+02 Score=23.58 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=27.7
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHH
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNA 182 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~a 182 (250)
=+..+.++++..|...|..++-.+|-...-..+|+||.....|+-++
T Consensus 115 ~i~k~RKkLe~rRLdyD~~ksk~~kak~~~~~~eeElr~Ae~kfees 161 (215)
T cd07593 115 EYHSARKKLESRRLAYDAALTKSQKAKKEDSRLEEELRRAKAKYEES 161 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence 45677788888888888877666544322234455555444444433
No 404
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=20.68 E-value=6.7e+02 Score=23.09 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=42.2
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHH
Q 025643 143 NVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ 192 (250)
Q Consensus 143 kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ss 192 (250)
.++.|+.+|+.+..+.+...+++..|-..|.....+-.++-+++-.|..+
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888888999999999999999999888888888888887543
No 405
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=20.61 E-value=4.7e+02 Score=21.31 Aligned_cols=68 Identities=10% Similarity=0.272 Sum_probs=35.6
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEG 206 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~ 206 (250)
......++....++.+..........+...-+.+..|...+.++...++.+...+-.+......+-+.
T Consensus 90 ~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~ 157 (213)
T PF00015_consen 90 QTSESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISES 157 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhh
Confidence 34444455555555555555554444555555555566666666666666655554444444433333
No 406
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.59 E-value=9.4e+02 Score=24.77 Aligned_cols=18 Identities=22% Similarity=0.036 Sum_probs=9.2
Q ss_pred hccchhHHHHHHhhhhhc
Q 025643 114 FMRGPRRFLFRHTFGRLR 131 (250)
Q Consensus 114 ll~gPRRfLyr~TlgRF~ 131 (250)
.+-||+=.+=|++=||+-
T Consensus 102 ~l~g~~v~l~R~~~G~~~ 119 (555)
T TIGR03545 102 AIEGLAFGTERSTSGAVP 119 (555)
T ss_pred EEecCEEEEEEccCCCCC
Confidence 344555555555555554
No 407
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=20.57 E-value=3.7e+02 Score=20.11 Aligned_cols=29 Identities=7% Similarity=0.060 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025643 216 LKLRAEVASMASLLKRQRAMMDKQIMKIS 244 (250)
Q Consensus 216 ~~LRsEVAs~AS~lK~qR~aL~k~l~KIs 244 (250)
-.+=.++-.+..++..+-..++.-...+.
T Consensus 50 ~~ll~~~n~l~~dv~~k~~~v~~~~~~v~ 78 (90)
T PF06103_consen 50 NDLLHNTNELLEDVNEKLEKVDPVFEAVA 78 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444444444555444444444443333
No 408
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=20.33 E-value=5.5e+02 Score=26.99 Aligned_cols=51 Identities=24% Similarity=0.160 Sum_probs=30.8
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHH
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 189 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L 189 (250)
++..|--.++.|..-|.. =+++..|-+.++|++++.-+++|+-.--.+|-|
T Consensus 493 i~ada~SS~eTll~niq~---llkva~dnar~qekQiq~Ek~ELkmd~lrerel 543 (641)
T KOG3915|consen 493 IFADALSSIETLLTNIQG---LLKVAIDNARAQEKQIQLEKTELKMDFLREREL 543 (641)
T ss_pred cccccchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443444444443332 245567788889999999888888655444443
No 409
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=20.27 E-value=6.6e+02 Score=22.84 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=21.6
Q ss_pred hHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHH
Q 025643 103 ATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMF 137 (250)
Q Consensus 103 a~g~a~~agllll~gPRRfLyr~TlgRF~SEEall 137 (250)
+...-+...++++--=.+|||+-...-+..=+.-+
T Consensus 7 t~~~qiInFlILv~lL~~fl~kPi~~~l~eR~~~I 41 (250)
T PRK14474 7 TVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRI 41 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666668999988777665444333
No 410
>PRK14160 heat shock protein GrpE; Provisional
Probab=20.23 E-value=4.3e+02 Score=24.07 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhh
Q 025643 186 VQRLAKQVYKVETQ 199 (250)
Q Consensus 186 Iq~L~ssvyK~E~~ 199 (250)
++.|+-.+=..|++
T Consensus 114 ~~~LLpVlDnLerA 127 (211)
T PRK14160 114 LKELLPVLDNLERA 127 (211)
T ss_pred HHHHhhHHhHHHHH
Confidence 44444444444444
No 411
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=20.10 E-value=3.3e+02 Score=20.82 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=36.0
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH
Q 025643 141 EKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK 191 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s 191 (250)
+..++||...++.+|+|.=.|.=..+....+ --..+|...++|.++--
T Consensus 10 ~~s~eeL~~~l~eLK~ELf~LR~q~a~g~l~---n~~~ir~vRr~IARi~T 57 (69)
T COG0255 10 EKSVEELEEELRELKKELFNLRFQLATGQLE---NPHRIREVRRDIARILT 57 (69)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CcHHHHHHHHHHHHHHH
Confidence 4567899999999999998887777776665 33457777777777643
No 412
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=20.10 E-value=6.2e+02 Score=22.49 Aligned_cols=45 Identities=18% Similarity=0.056 Sum_probs=34.8
Q ss_pred HHHHhhhhhccHHHHHHHHHHhHH-HHHHhHHhhHHHHHHHHHHHH
Q 025643 122 LFRHTFGRLRSEEAMFVRAEKNVN-ELNLSGELMKKESKKLLERAA 166 (250)
Q Consensus 122 Lyr~TlgRF~SEEall~~Ae~kV~-eLr~svdl~k~Es~KL~eraa 166 (250)
-||.+.|...+-..|.......=. .+.+.++.+.+++..+.+.+.
T Consensus 200 ~frd~tRia~~~p~l~~~I~~~N~~~~~~~l~~~~~~L~~l~~~l~ 245 (258)
T PF02153_consen 200 GFRDMTRIASSDPELWADIFLSNPENLLEALDEFIKELNELREALE 245 (258)
T ss_dssp HHHHHHGGGGS-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhcccccCChHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888889888875444 489999999999988887665
No 413
>PRK08452 flagellar protein FlaG; Provisional
Probab=20.01 E-value=73 Score=26.74 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=18.9
Q ss_pred HHhcccCCchhHHhHHHHHHHHH
Q 025643 204 MEGLREIPGREALKLRAEVASMA 226 (250)
Q Consensus 204 ~d~LR~LPsreA~~LRsEVAs~A 226 (250)
-+.+|+||+.+++++-+.+..++
T Consensus 94 ~eVIRqIP~Ee~L~l~~~m~e~~ 116 (124)
T PRK08452 94 GKVIREIPSKEAIELMEYMRDVI 116 (124)
T ss_pred CceeeeCCCHHHHHHHHHHHHhh
Confidence 36789999999999988776654
No 414
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.01 E-value=5.5e+02 Score=21.82 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=10.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 025643 152 ELMKKESKKLLERAALAEKEM 172 (250)
Q Consensus 152 dl~k~Es~KL~eraa~AE~Em 172 (250)
+..+.|.++|.+.+..+|.|+
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~ 177 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEI 177 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444
Done!