Query 025643
Match_columns 250
No_of_seqs 36 out of 38
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 14:31:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 93.7 1.5 5.2E-05 37.8 13.3 104 137-241 48-153 (256)
2 3u1c_A Tropomyosin alpha-1 cha 89.1 6.2 0.00021 30.2 13.9 93 144-241 4-96 (101)
3 3u59_A Tropomyosin beta chain; 87.6 7.7 0.00026 29.4 13.9 93 144-241 4-96 (101)
4 2efr_A General control protein 86.6 8.7 0.0003 32.1 11.0 84 118-204 70-153 (155)
5 2b9c_A Striated-muscle alpha t 85.9 7 0.00024 32.1 10.1 60 135-194 66-125 (147)
6 2dfs_A Myosin-5A; myosin-V, in 85.6 4.4 0.00015 42.2 10.7 54 118-171 897-957 (1080)
7 2efr_A General control protein 85.5 15 0.00051 30.7 13.9 83 137-223 13-96 (155)
8 1ic2_A Tropomyosin alpha chain 84.3 6.8 0.00023 28.7 8.4 62 146-207 3-64 (81)
9 3oja_B Anopheles plasmodium-re 82.1 22 0.00074 32.8 12.7 100 129-236 471-581 (597)
10 3na7_A HP0958; flagellar bioge 79.0 30 0.001 29.6 15.2 22 185-206 91-112 (256)
11 2xzr_A Immunoglobulin-binding 77.1 27 0.00091 28.1 11.5 49 158-206 57-105 (114)
12 3lay_A Zinc resistance-associa 76.2 15 0.00053 30.9 9.0 76 153-249 71-146 (175)
13 3vkg_A Dynein heavy chain, cyt 71.8 39 0.0013 39.6 13.3 97 117-213 2010-2106(3245)
14 1i84_S Smooth muscle myosin he 71.6 18 0.00062 37.5 9.9 68 140-207 869-936 (1184)
15 1cii_A Colicin IA; bacteriocin 69.1 81 0.0028 31.3 13.2 74 133-206 340-413 (602)
16 3u1c_A Tropomyosin alpha-1 cha 67.8 38 0.0013 25.8 10.9 65 139-203 27-91 (101)
17 2dfs_A Myosin-5A; myosin-V, in 67.3 52 0.0018 34.4 12.2 22 186-207 1000-1021(1080)
18 1i84_S Smooth muscle myosin he 65.9 24 0.00081 36.6 9.3 24 10-33 664-687 (1184)
19 2b9b_A Fusion glycoprotein F0; 65.5 17 0.00059 35.5 7.8 61 153-213 427-487 (497)
20 2v66_B Nuclear distribution pr 63.4 46 0.0016 26.5 8.7 72 140-211 1-83 (111)
21 3hnw_A Uncharacterized protein 61.4 63 0.0022 26.0 9.8 60 139-198 72-131 (138)
22 3u59_A Tropomyosin beta chain; 61.0 51 0.0017 24.8 11.1 88 138-226 5-92 (101)
23 3ghg_A Fibrinogen alpha chain; 59.1 29 0.001 34.5 8.1 35 213-247 117-151 (562)
24 2z5i_A TM, general control pro 58.8 22 0.00075 24.6 5.3 34 138-171 8-41 (52)
25 3oja_B Anopheles plasmodium-re 57.2 1.1E+02 0.0036 28.2 11.2 17 149-165 456-472 (597)
26 3vkg_A Dynein heavy chain, cyt 55.0 2.2E+02 0.0075 33.7 15.3 26 137-162 1929-1954(3245)
27 2b5u_A Colicin E3; high resolu 55.0 40 0.0014 33.4 8.3 67 138-204 317-383 (551)
28 3ghg_A Fibrinogen alpha chain; 54.5 1.4E+02 0.0047 29.8 11.9 95 142-241 64-159 (562)
29 2eqb_B RAB guanine nucleotide 51.7 84 0.0029 24.6 12.6 86 148-244 4-89 (97)
30 4ani_A Protein GRPE; chaperone 51.2 51 0.0018 28.6 7.6 60 154-213 64-125 (213)
31 3swy_A Cyclic nucleotide-gated 49.6 60 0.0021 22.3 6.3 41 139-179 2-42 (46)
32 2e7s_A RAB guanine nucleotide 48.5 1.1E+02 0.0037 25.2 8.7 46 194-243 63-108 (135)
33 3qne_A Seryl-tRNA synthetase, 47.2 2E+02 0.0069 27.6 11.7 88 124-211 20-112 (485)
34 3azd_A Short alpha-tropomyosin 47.0 5.6 0.00019 25.9 0.7 32 141-172 3-34 (37)
35 3zx6_A HAMP, methyl-accepting 46.5 1.5E+02 0.0052 26.0 10.9 64 135-198 87-150 (341)
36 3zx6_A HAMP, methyl-accepting 45.6 1.6E+02 0.0054 25.9 11.8 72 139-210 84-155 (341)
37 3bbp_D GRIP and coiled-coil do 44.1 34 0.0012 25.7 4.6 29 135-163 36-64 (71)
38 1ses_A Seryl-tRNA synthetase; 41.9 92 0.0031 28.9 8.3 78 135-212 28-106 (421)
39 3oja_A Leucine-rich immune mol 40.8 1.3E+02 0.0046 27.0 9.0 38 153-190 421-458 (487)
40 1ic2_A Tropomyosin alpha chain 40.6 1E+02 0.0035 22.3 10.0 68 141-208 5-72 (81)
41 1jcd_A Major outer membrane li 40.5 92 0.0031 21.7 7.0 44 136-179 5-48 (52)
42 3fpp_A Macrolide-specific effl 40.0 1.5E+02 0.005 25.2 8.7 29 146-174 73-101 (341)
43 3plt_A Sphingolipid long chain 39.5 1.5E+02 0.005 26.4 8.8 55 137-191 99-159 (234)
44 1qu7_A Methyl-accepting chemot 39.5 1.6E+02 0.0055 24.8 8.8 63 136-198 8-70 (227)
45 3lss_A Seryl-tRNA synthetase; 38.8 2.5E+02 0.0087 26.9 11.0 42 125-166 25-68 (484)
46 2dq0_A Seryl-tRNA synthetase; 38.7 2.4E+02 0.0082 26.4 10.6 77 135-211 31-110 (455)
47 1wle_A Seryl-tRNA synthetase; 38.2 2.7E+02 0.0094 26.6 11.1 30 137-166 72-101 (501)
48 3oja_A Leucine-rich immune mol 38.2 1.7E+02 0.0058 26.4 9.2 9 96-104 335-343 (487)
49 4etp_A Kinesin-like protein KA 36.8 99 0.0034 28.5 7.6 38 145-182 6-43 (403)
50 2jee_A YIIU; FTSZ, septum, coi 36.4 1.4E+02 0.0047 22.6 11.3 70 135-207 6-78 (81)
51 4emc_A Monopolin complex subun 36.3 1.3E+02 0.0044 26.1 7.7 52 129-180 14-65 (190)
52 2ve7_A Kinetochore protein HEC 36.1 2.2E+02 0.0074 25.4 9.5 27 139-165 182-208 (315)
53 3cl3_D NF-kappa-B essential mo 35.6 56 0.0019 27.0 5.1 74 172-245 11-87 (130)
54 3mud_A DNA repair protein XRCC 35.2 1E+02 0.0034 26.4 6.8 45 135-179 128-172 (175)
55 3tnu_B Keratin, type II cytosk 34.7 1.6E+02 0.0054 22.8 8.0 21 141-161 35-55 (129)
56 3swf_A CGMP-gated cation chann 34.2 1.1E+02 0.0038 22.9 6.1 34 139-172 4-37 (74)
57 3mk7_C Cytochrome C oxidase, C 31.9 18 0.00063 31.5 1.8 33 27-59 47-79 (311)
58 2r32_A GCN4-PII/tumor necrosis 31.3 38 0.0013 28.9 3.5 39 175-213 5-43 (166)
59 3tnu_A Keratin, type I cytoske 31.0 1.5E+02 0.0052 23.0 6.8 21 141-161 37-57 (131)
60 1go4_E MAD1 (mitotic arrest de 30.7 91 0.0031 24.4 5.4 33 142-174 12-44 (100)
61 3a6m_A Protein GRPE, HSP-70 co 30.5 7.1 0.00024 32.8 -1.1 66 141-213 18-85 (177)
62 3m48_A General control protein 30.2 63 0.0021 21.1 3.6 26 138-163 3-28 (33)
63 1lrz_A FEMA, factor essential 30.1 1.1E+02 0.0037 27.6 6.5 55 141-196 246-300 (426)
64 1kd8_B GABH BLL, GCN4 acid bas 30.0 86 0.0029 20.8 4.3 28 137-164 3-30 (36)
65 2v71_A Nuclear distribution pr 29.8 2.6E+02 0.0091 23.9 14.2 30 137-166 51-80 (189)
66 4dk0_A Putative MACA; alpha-ha 29.6 2.1E+02 0.0072 24.4 8.0 23 171-193 116-138 (369)
67 3cvf_A Homer-3, homer protein 29.4 1.1E+02 0.0039 22.9 5.5 49 144-192 8-56 (79)
68 3c98_B Syntaxin-1A; protein co 28.7 2.3E+02 0.0078 22.7 10.7 70 141-210 46-118 (279)
69 1nkp_B MAX protein, MYC proto- 28.2 1.6E+02 0.0056 21.0 6.7 43 130-172 35-77 (83)
70 4etp_A Kinesin-like protein KA 28.2 1.5E+02 0.0052 27.3 7.3 49 141-189 9-57 (403)
71 2dq3_A Seryl-tRNA synthetase; 28.2 1.3E+02 0.0044 27.9 6.8 77 135-211 30-109 (425)
72 3cve_A Homer protein homolog 1 28.1 1.8E+02 0.0062 21.5 6.7 47 146-192 4-50 (72)
73 2i1j_A Moesin; FERM, coiled-co 27.9 32 0.0011 33.3 2.8 33 130-162 323-355 (575)
74 3hnw_A Uncharacterized protein 27.4 2.4E+02 0.0082 22.6 9.0 56 137-192 77-132 (138)
75 2f1m_A Acriflavine resistance 27.2 2.6E+02 0.0089 22.9 9.4 53 135-187 60-115 (277)
76 4etp_B Spindle POLE BODY-assoc 27.1 1.4E+02 0.0049 27.8 6.9 46 148-193 9-54 (333)
77 3u06_A Protein claret segregat 26.9 1.8E+02 0.0062 27.0 7.6 28 144-171 12-39 (412)
78 1deq_A Fibrinogen (alpha chain 26.7 4.2E+02 0.015 25.2 10.7 54 190-247 101-154 (390)
79 1m1j_B Fibrinogen beta chain; 25.5 4.6E+02 0.016 25.2 12.9 46 148-193 99-144 (464)
80 2ke4_A CDC42-interacting prote 25.1 1.1E+02 0.0037 23.5 4.8 31 141-171 61-91 (98)
81 1lwu_C Fibrinogen gamma chain; 24.6 2E+02 0.0068 26.3 7.3 48 150-197 6-53 (323)
82 2bnx_A Diaphanous protein homo 24.3 11 0.00037 34.5 -1.1 51 135-188 333-383 (386)
83 3ub0_A Non-structural protein 24.3 2E+02 0.0069 25.1 6.9 62 137-199 19-80 (199)
84 2js5_A Uncharacterized protein 24.1 94 0.0032 23.1 4.1 19 150-168 4-22 (71)
85 3fyq_A CG6831-PA (talin); 5-he 23.5 2.5E+02 0.0085 24.4 7.3 51 142-192 139-189 (199)
86 3tnu_A Keratin, type I cytoske 23.5 2.6E+02 0.0089 21.7 7.9 30 141-170 44-73 (131)
87 2zvf_A Alanyl-tRNA synthetase; 23.2 1.2E+02 0.0043 23.6 5.0 14 151-164 41-54 (171)
88 1dkg_A Nucleotide exchange fac 23.1 3.1E+02 0.011 23.1 7.8 44 170-213 60-105 (197)
89 2z5i_I TM, tropomyosin alpha-1 23.1 1.3E+02 0.0045 20.0 4.3 31 143-173 4-34 (40)
90 1f5n_A Interferon-induced guan 23.0 5.3E+02 0.018 25.1 10.3 33 140-172 485-517 (592)
91 2hc5_A ORF 99, hypothetical pr 22.9 30 0.001 27.3 1.4 23 205-227 80-102 (117)
92 2wq1_A General control protein 22.5 1.5E+02 0.0051 19.3 4.3 26 138-163 3-28 (33)
93 2ocy_A RAB guanine nucleotide 22.2 3.4E+02 0.012 22.5 13.5 58 182-243 63-120 (154)
94 3fbi_A Mediator of RNA polymer 21.7 30 0.001 26.4 1.0 16 16-39 7-22 (84)
95 1lwu_C Fibrinogen gamma chain; 21.5 2.8E+02 0.0095 25.3 7.6 49 158-206 7-55 (323)
96 1s1c_X RHO-associated, coiled- 21.5 1.3E+02 0.0044 22.3 4.4 29 146-174 3-31 (71)
97 3rvy_A ION transport protein; 21.3 67 0.0023 27.0 3.3 21 105-125 218-238 (285)
98 2v71_A Nuclear distribution pr 21.2 3.9E+02 0.013 22.8 14.8 22 163-184 63-84 (189)
99 2ovc_A Potassium voltage-gated 20.9 53 0.0018 21.2 2.0 22 187-208 6-27 (33)
100 2inr_A DNA topoisomerase 4 sub 20.9 2.6E+02 0.009 27.3 7.7 43 195-237 435-478 (514)
101 2r2v_A GCN4 leucine zipper; co 20.8 1.7E+02 0.0057 19.2 4.3 27 137-163 3-29 (34)
102 2zvf_A Alanyl-tRNA synthetase; 20.7 86 0.0029 24.6 3.6 43 130-172 9-55 (171)
103 3okp_A GDP-mannose-dependent a 20.6 2.1E+02 0.0073 23.4 6.1 43 174-216 343-385 (394)
104 1fxk_C Protein (prefoldin); ar 20.4 2.8E+02 0.0096 21.0 6.4 40 134-173 87-126 (133)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.72 E-value=1.5 Score=37.79 Aligned_cols=104 Identities=12% Similarity=0.169 Sum_probs=55.9
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchh
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGET--ELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGRE 214 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrt--kLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsre 214 (250)
+..++..+++++..+..+.++++.+..++.-.++.+..+.+ .+.+-.++|..+...+...|.....+|+.+..+-. +
T Consensus 48 ~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~-~ 126 (256)
T 3na7_A 48 ILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE-K 126 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 33444444444444444444444444444444444444332 23445567777777777788777777777765422 2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 215 ALKLRAEVASMASLLKRQRAMMDKQIM 241 (250)
Q Consensus 215 A~~LRsEVAs~AS~lK~qR~aL~k~l~ 241 (250)
--.+..+++.+..++...+..++..+.
T Consensus 127 l~~~~~~l~~~~~~l~~~~~~~~~~~~ 153 (256)
T 3na7_A 127 QEDLKKEMLELEKLALELESLVENEVK 153 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234555555555555555555554443
No 2
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.14 E-value=6.2 Score=30.21 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=68.4
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHH
Q 025643 144 VNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVA 223 (250)
Q Consensus 144 V~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVA 223 (250)
+...+..|..++.|.....||+..+|.+++.-.-...+...+|.+|-+.+-.+|...-.+-+.|.+ |..-=.+..
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~e-----a~~kLee~e 78 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHK-----SEDSLLFAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 456788889999999999999999999999999999999999999999998888876666665543 222222333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025643 224 SMASLLKRQRAMMDKQIM 241 (250)
Q Consensus 224 s~AS~lK~qR~aL~k~l~ 241 (250)
..+++.-.+-.+|+++|.
T Consensus 79 k~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 79 ENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444545555556666654
No 3
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.62 E-value=7.7 Score=29.45 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=65.6
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHH
Q 025643 144 VNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVA 223 (250)
Q Consensus 144 V~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVA 223 (250)
+...+..|..++-|.....||+-.+|.+++--.-...+...+|.+|-+.+-.+|...-..-+.|.+.-. --.+.-
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~-----kLe~~e 78 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQE-----KLEQAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 456678888888899999999999999988888888888888888888888888777766666553322 112223
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025643 224 SMASLLKRQRAMMDKQIM 241 (250)
Q Consensus 224 s~AS~lK~qR~aL~k~l~ 241 (250)
..+++.-.+..+|+++|.
T Consensus 79 k~~~~AE~evasLnRriq 96 (101)
T 3u59_A 79 KKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555556666654
No 4
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=86.56 E-value=8.7 Score=32.10 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=71.3
Q ss_pred hhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 025643 118 PRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVE 197 (250)
Q Consensus 118 PRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E 197 (250)
.|.=-|-..+.-+. ..++.|+.+.+.---+|.-+.+++.+|+|++..+.+.+..=.-.|.+|-.+|.++.+-.|-.+
T Consensus 70 qrEd~yEeqIk~L~---~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 70 QKEDKYEEEIKVLS---DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 35555655555553 578888888888888999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHH
Q 025643 198 TQAADLM 204 (250)
Q Consensus 198 ~~A~gL~ 204 (250)
+..+.|+
T Consensus 147 ~~~~~~~ 153 (155)
T 2efr_A 147 NEVARLK 153 (155)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9888775
No 5
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=85.95 E-value=7 Score=32.06 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=53.2
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHH
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVY 194 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvy 194 (250)
.+...|++++.+....+..+.+++.+..+|+..||.....=...|+..|+.|++|--+--
T Consensus 66 ~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ee 125 (147)
T 2b9c_A 66 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVE 125 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 355678999999999999999999999999999999999999999999999999865433
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.61 E-value=4.4 Score=42.18 Aligned_cols=54 Identities=24% Similarity=0.290 Sum_probs=12.0
Q ss_pred hhHHHHHHhhhhhccHHHH-------HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 025643 118 PRRFLFRHTFGRLRSEEAM-------FVRAEKNVNELNLSGELMKKESKKLLERAALAEKE 171 (250)
Q Consensus 118 PRRfLyr~TlgRF~SEEal-------l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~E 171 (250)
-|+++=|.-+.+++.|..- -..-|.++++|+..++...+|.+.|++++...|+.
T Consensus 897 ~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~ 957 (1080)
T 2dfs_A 897 YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT 957 (1080)
T ss_dssp HHHHHHHHHTTTC-----------------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4666777777777666532 34556778888888887777776666655433333
No 7
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=85.49 E-value=15 Score=30.68 Aligned_cols=83 Identities=27% Similarity=0.296 Sum_probs=59.2
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCch-hH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR-EA 215 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsr-eA 215 (250)
...|+.++.+... +.+++.+-++|+..||.....=-..|+.+|+.+++|--+--|...+=...-+.++.|-.+ ..
T Consensus 13 ae~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKE 88 (155)
T 2efr_A 13 LSKNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKE 88 (155)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777655 889999999999999999888889999999999999766665554444455555444443 33
Q ss_pred HhHHHHHH
Q 025643 216 LKLRAEVA 223 (250)
Q Consensus 216 ~~LRsEVA 223 (250)
.+-|+|.|
T Consensus 89 AE~RAE~A 96 (155)
T 2efr_A 89 AETRAEFA 96 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 8
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.26 E-value=6.8 Score=28.68 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=45.3
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 025643 146 ELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGL 207 (250)
Q Consensus 146 eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~L 207 (250)
.++..|..++.|.....+++..+|.++..-.-...++..+|.+|-+.+--+|...-..-+.|
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888888888888888877777777777777777777777666555444443
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.09 E-value=22 Score=32.79 Aligned_cols=100 Identities=17% Similarity=0.131 Sum_probs=59.4
Q ss_pred hhccHHHHHHHHHHhHHHHHHhH-----------HhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 025643 129 RLRSEEAMFVRAEKNVNELNLSG-----------ELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVE 197 (250)
Q Consensus 129 RF~SEEall~~Ae~kV~eLr~sv-----------dl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E 197 (250)
+....|..++..+.+.++.++.. +.++++.+++.++.+..|.+.++=.....+-..+++.+-+.+-.+|
T Consensus 471 ~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 550 (597)
T 3oja_B 471 EQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALE 550 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHH
Confidence 33344555555555555554442 4666677777777777777777655555555566666666666666
Q ss_pred hhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHH
Q 025643 198 TQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMM 236 (250)
Q Consensus 198 ~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR~aL 236 (250)
++-..-++.+ .+++.|.+.+..++|+.=..+
T Consensus 551 ~~~~~~~~~~--------~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 551 KQLDNKRAKQ--------AELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhhhhHH--------HHHHHHHHHHHHHHHHHHHHh
Confidence 6666555544 455666666655555544333
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=78.96 E-value=30 Score=29.62 Aligned_cols=22 Identities=5% Similarity=0.031 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHh
Q 025643 185 QVQRLAKQVYKVETQAADLMEG 206 (250)
Q Consensus 185 qIq~L~ssvyK~E~~A~gL~d~ 206 (250)
+++.|-+.+...++.-..+-|.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~e 112 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANRE 112 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444433333333
No 11
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=77.13 E-value=27 Score=28.05 Aligned_cols=49 Identities=12% Similarity=0.312 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 025643 158 SKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEG 206 (250)
Q Consensus 158 s~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~ 206 (250)
.++-..|+---.....-.+-++|++..|+..|++.+|-+|+..+.++.-
T Consensus 57 lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl 105 (114)
T 2xzr_A 57 LQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKL 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333444444555556677788999999999999999999999888753
No 12
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=76.24 E-value=15 Score=30.88 Aligned_cols=76 Identities=13% Similarity=0.161 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHH
Q 025643 153 LMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQ 232 (250)
Q Consensus 153 l~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~q 232 (250)
.++.+.+++.+.....-.++ +.++++...||+.|...---+|.+ +-++-.|++.+-.++..+
T Consensus 71 EQq~ql~~I~~e~r~~~~~L---r~ql~akr~EL~aL~~a~~~Deak---------------I~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 71 EQQATAQKIYDDYYTQTSAL---RQQLISKRYEYNALLTASSPDTAK---------------INAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTSSSCCHHH---------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCHHH---------------HHHHHHHHHHHHHHHHHH
Confidence 34445555554443333332 455666666777665443333333 345556777777777788
Q ss_pred HHHHHHHHHHHhhcCCC
Q 025643 233 RAMMDKQIMKISELGVS 249 (250)
Q Consensus 233 R~aL~k~l~KIs~~GV~ 249 (250)
|-..+..+.|. |||
T Consensus 133 R~k~~~em~Ke---Gip 146 (175)
T 3lay_A 133 RVKRDVAMAQA---GIP 146 (175)
T ss_dssp HHHHHHHHHHT---TCC
T ss_pred HHHHHHHHHHh---CCC
Confidence 88777777665 887
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.78 E-value=39 Score=39.62 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=67.7
Q ss_pred chhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHH
Q 025643 117 GPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV 196 (250)
Q Consensus 117 gPRRfLyr~TlgRF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~ 196 (250)
.|-|-=-...-..+..-++-++.++++++++...++.++.|-++.......-|.|+..-..||..|.+=|.+|.+.--.=
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 45443333333444444556666777777777777777777777777777777788888888888888888888877777
Q ss_pred HhhHHHHHHhcccCCch
Q 025643 197 ETQAADLMEGLREIPGR 213 (250)
Q Consensus 197 E~~A~gL~d~LR~LPsr 213 (250)
+.++..+.+.+..||+.
T Consensus 2090 ~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2090 EQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHH
Confidence 77777777777777765
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=71.60 E-value=18 Score=37.50 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=33.5
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 025643 140 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGL 207 (250)
Q Consensus 140 Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~L 207 (250)
.+.+++.+...++.+..+.++|++....++.++..-+.++..+..++..+....-+.+.+-..+.+.|
T Consensus 869 l~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 869 TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444445555555555555555555555555555555555555555444444433
No 15
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=69.11 E-value=81 Score=31.34 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 025643 133 EEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEG 206 (250)
Q Consensus 133 EEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~ 206 (250)
+..+++.=.++...|+|-++..++|.-+++..........-++.+...+|-.++..+.+.--.+|+++.++...
T Consensus 340 ~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 340 DKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 45678877788899999999999999999888888888888888888888888888777777777777665544
No 16
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=67.81 E-value=38 Score=25.77 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=33.0
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADL 203 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL 203 (250)
.++.+++...+..+..-.|..-|..|...-|.|+-+-...|..+-..+..--+..-+.|...++|
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555555555554444444555444444
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=67.34 E-value=52 Score=34.36 Aligned_cols=22 Identities=9% Similarity=0.071 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHhc
Q 025643 186 VQRLAKQVYKVETQAADLMEGL 207 (250)
Q Consensus 186 Iq~L~ssvyK~E~~A~gL~d~L 207 (250)
++.+.+.--..|.+...+.++|
T Consensus 1000 ~~~~~ke~~~lee~~~~~~~~L 1021 (1080)
T 2dfs_A 1000 LHQTQTEKKTIEEWADKYKHET 1021 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444433
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=65.90 E-value=24 Score=36.64 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=13.0
Q ss_pred hhHHHHhhhhhcccccccccccCC
Q 025643 10 DSIQRLCHSLSSFFPTQLFHLSSN 33 (250)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~ 33 (250)
.++..|...|.+.-|-...-+-.|
T Consensus 664 ~~l~~L~~~l~~t~phfvRCIkPN 687 (1184)
T 1i84_S 664 EQLTKLMTTLRNTNPNFVRCIIPN 687 (1184)
T ss_dssp HHHHHHHHHHTTSEEEECCEECCC
T ss_pred HHHHHHHHHHHhcCCCceeeeCCC
Confidence 445556666666555555444444
No 19
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=65.50 E-value=17 Score=35.53 Aligned_cols=61 Identities=15% Similarity=0.295 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCch
Q 025643 153 LMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 153 l~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsr 213 (250)
+.+.|+.+....+..|++-+.+--..|.+....+.++.+.+|.+|+..+.++.-.++-|+-
T Consensus 427 DISseL~~vn~sl~~a~~~I~~Sn~~L~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (497)
T 2b9b_A 427 DISQNLAAVNKSLSDALQHLAQSDTYLSAIEDKIEEILSKIYHIENEIARIKKLIGEAPGG 487 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC----
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHhhhhhhhHHHHHHHHHhccCCCC
Confidence 3567888888889999999999999999999999999999999999999999999999974
No 20
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=63.36 E-value=46 Score=26.47 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=49.1
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH-------HHchHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHhcc
Q 025643 140 AEKNVNELNLSGELMKKESKKLLERAALAEKE-------MIRGETELKNAGN----QVQRLAKQVYKVETQAADLMEGLR 208 (250)
Q Consensus 140 Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~E-------m~RGrtkLr~aG~----qIq~L~ssvyK~E~~A~gL~d~LR 208 (250)
|+++..+|+...+.+..|...+.++...+..| +++--++||.... .||.|--..=+.|+++.-.-.-|.
T Consensus 1 ~Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLe 80 (111)
T 2v66_B 1 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLE 80 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHH
Confidence 57788888888888888888888887777665 7777777776654 445555555666666655444443
Q ss_pred cCC
Q 025643 209 EIP 211 (250)
Q Consensus 209 ~LP 211 (250)
++-
T Consensus 81 D~E 83 (111)
T 2v66_B 81 DFE 83 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=61.37 E-value=63 Score=26.05 Aligned_cols=60 Identities=25% Similarity=0.288 Sum_probs=33.4
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 198 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~ 198 (250)
.+..++.+|.+.++.+.+|...|...+..+..++.--.-++....+++..|-..+-+.|.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666555555555555555555444444555555555555555555554
No 22
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=61.04 E-value=51 Score=24.84 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=57.0
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHh
Q 025643 138 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALK 217 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~ 217 (250)
....+++..|+.-.|........++..+-.+|.+....-..+.+-.+.|+.+-..+=+.+.+.....+.|..- .+.+..
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~-ek~~~~ 83 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA-EKKATD 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4456677777777777777777777666666666666666667777777777666666676666666666543 233344
Q ss_pred HHHHHHHHH
Q 025643 218 LRAEVASMA 226 (250)
Q Consensus 218 LRsEVAs~A 226 (250)
-=+||+++.
T Consensus 84 AE~evasLn 92 (101)
T 3u59_A 84 AEAEVASLN 92 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444666654
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=59.08 E-value=29 Score=34.49 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=23.3
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025643 213 REALKLRAEVASMASLLKRQRAMMDKQIMKISELG 247 (250)
Q Consensus 213 reA~~LRsEVAs~AS~lK~qR~aL~k~l~KIs~~G 247 (250)
++-..|+.+|.+..+.++.-|++|++.+.||-++=
T Consensus 117 RrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 117 SRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777777777777776543
No 24
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=58.85 E-value=22 Score=24.62 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=23.2
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 025643 138 VRAEKNVNELNLSGELMKKESKKLLERAALAEKE 171 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~E 171 (250)
.-||+.|+.|.++||.+..|+..-.++-..-.++
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~e 41 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEE 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4578999999999998877766554444433333
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.15 E-value=1.1e+02 Score=28.17 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=6.6
Q ss_pred HhHHhhHHHHHHHHHHH
Q 025643 149 LSGELMKKESKKLLERA 165 (250)
Q Consensus 149 ~svdl~k~Es~KL~era 165 (250)
..++.+..|.++++++.
T Consensus 456 ~e~~~~~~~i~~l~~~~ 472 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQ 472 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444443333
No 26
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.03 E-value=2.2e+02 Score=33.65 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=13.6
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLL 162 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~ 162 (250)
+..|...|++|+.....++.++++-.
T Consensus 1929 L~et~~~V~~l~~~L~~~~~~L~~k~ 1954 (3245)
T 3vkg_A 1929 LRDTEAQVKDLQVSLAQKNRELDVKN 1954 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666655555555444433
No 27
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=55.02 E-value=40 Score=33.41 Aligned_cols=67 Identities=19% Similarity=0.161 Sum_probs=54.9
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 025643 138 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLM 204 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~ 204 (250)
..||++.+..|..++...+.....+||.+.++.=+.--++.|-.+-+++...+..+-..++.+-++|
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~ 383 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPM 383 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChh
Confidence 4577778888888888888888888998889998988899998888999988888888887776443
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.49 E-value=1.4e+02 Score=29.83 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=59.8
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHhcccCCchhHHhHHH
Q 025643 142 KNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVY-KVETQAADLMEGLREIPGREALKLRA 220 (250)
Q Consensus 142 ~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvy-K~E~~A~gL~d~LR~LPsreA~~LRs 220 (250)
..+++||..+|.+ ..+.|--+.....-.|+.+++ +.+++ +..+....+. ..|++-..|+..+..-= ..=..||+
T Consensus 64 krINELKnqLEdl-sKnsKdseqy~k~~~E~Lr~r--q~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQl-snIrvLQs 138 (562)
T 3ghg_A 64 NRINKLKNSLFEY-QKNNKDSHSLTTNIMEILRGD--FSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKV-QHIQLLQK 138 (562)
T ss_dssp HHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSH--HHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHH--HHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3456666666666 333333344444455566554 44444 7777777777 78888888887776543 44466788
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025643 221 EVASMASLLKRQRAMMDKQIM 241 (250)
Q Consensus 221 EVAs~AS~lK~qR~aL~k~l~ 241 (250)
-|..+.+++++-=..+|-.|+
T Consensus 139 nLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 139 NVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777666665554
No 29
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.74 E-value=84 Score=24.57 Aligned_cols=86 Identities=13% Similarity=0.183 Sum_probs=49.9
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHH
Q 025643 148 NLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMAS 227 (250)
Q Consensus 148 r~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS 227 (250)
.+..+.++.++..|+.+.+.-+.|+.+=...|..... .=..+|+.-..+=..|.+| ...|=.|+-.|++
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~-------~R~~aE~~~~~ie~ElEeL----TasLFeEAN~MVa 72 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENE-------LRTKAEEEADKLNKEVEDL----TASLFDEANNMVA 72 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3444555555555555555555555554433333333 3333444444443444433 2456689999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025643 228 LLKRQRAMMDKQIMKIS 244 (250)
Q Consensus 228 ~lK~qR~aL~k~l~KIs 244 (250)
+.+++|..+.++..+.-
T Consensus 73 ~ar~e~~~~e~kn~~L~ 89 (97)
T 2eqb_B 73 DARKEKYAIEILNKRLT 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998877653
No 30
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=51.21 E-value=51 Score=28.61 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCch
Q 025643 154 MKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 154 ~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsr 213 (250)
+..++.+|++.+.-....++|-+.++-|-.+-.++-.. .-|.+|+-+..|+..+..|-+.
T Consensus 64 l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerA 125 (213)
T 4ani_A 64 AKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERA 125 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444444444444444555555555555555544433 3466788899998887766544
No 31
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=49.59 E-value=60 Score=22.26 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=29.4
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHH
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETEL 179 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkL 179 (250)
..|.+|+.|..++|.++.-..+|+--...++.-+++.-++|
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999988888765555555555444443
No 32
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.54 E-value=1.1e+02 Score=25.22 Aligned_cols=46 Identities=13% Similarity=0.201 Sum_probs=30.5
Q ss_pred HHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 194 YKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKI 243 (250)
Q Consensus 194 yK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR~aL~k~l~KI 243 (250)
..+|..-..+=..|.+| ...|=.|+-.|+++.+++|..+.++..+.
T Consensus 63 ~~aE~~~~~ie~ElE~L----TasLFeEAN~MVa~ar~~~~~~e~r~~~L 108 (135)
T 2e7s_A 63 TKAEEEADKLNKEVEDL----TASLFDEANNLVADARMEKYAIEILNKRL 108 (135)
T ss_dssp HHHHHTTHHHHHHHHHH----HHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 23566788999999999999998887664
No 33
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=47.18 E-value=2e+02 Score=27.62 Aligned_cols=88 Identities=11% Similarity=0.043 Sum_probs=46.5
Q ss_pred HHhhhhhccHH--HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHH---HHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 025643 124 RHTFGRLRSEE--AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEK---EMIRGETELKNAGNQVQRLAKQVYKVET 198 (250)
Q Consensus 124 r~TlgRF~SEE--all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~---Em~RGrtkLr~aG~qIq~L~ssvyK~E~ 198 (250)
.+...|+.+.+ +-+...+.+..+++..+|.+++|...+.+....+-+ +...=..+.++-+.+|..+-.....+|.
T Consensus 20 ~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~ 99 (485)
T 3qne_A 20 ASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADK 99 (485)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555543 444556666677777777777777766665543211 1111122334444555555556666666
Q ss_pred hHHHHHHhcccCC
Q 025643 199 QAADLMEGLREIP 211 (250)
Q Consensus 199 ~A~gL~d~LR~LP 211 (250)
+-..++-.|--||
T Consensus 100 ~~~~~l~~iPN~~ 112 (485)
T 3qne_A 100 NLRSKINQVGNIV 112 (485)
T ss_dssp HHHHHHTTSCCCC
T ss_pred HHHHHHHhCCCCC
Confidence 6555555544444
No 34
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=47.01 E-value=5.6 Score=25.95 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=24.1
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025643 141 EKNVNELNLSGELMKKESKKLLERAALAEKEM 172 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL~eraa~AE~Em 172 (250)
+..++.++..|..+..|...++|++..++.++
T Consensus 3 ~~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 3 SSSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp ---CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788888888888888888888887765
No 35
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=46.50 E-value=1.5e+02 Score=26.02 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=49.0
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 198 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~ 198 (250)
.-+......+++|..+++......+.+.+.+..+.+.+..|...+.+....++.+..++-+|..
T Consensus 87 ~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~ 150 (341)
T 3zx6_A 87 ASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIAD 150 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677888888888888888888888888888888888888887777777666555544
No 36
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=45.62 E-value=1.6e+02 Score=25.93 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=54.5
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccC
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI 210 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~L 210 (250)
.-...+++...+++.+....+...+.+..+............+....+..+...+-.+...+..+-+++..|
T Consensus 84 ~q~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~i~~~I 155 (341)
T 3zx6_A 84 QQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIADIISVI 155 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777788888888888888888888888877777777888888888888887777777666665544
No 37
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=44.14 E-value=34 Score=25.71 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=26.2
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHH
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLE 163 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~e 163 (250)
.+++-+|+...-|-+-++++|.|+++|+.
T Consensus 36 ~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 36 GLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 68889999999999999999999999863
No 38
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=41.86 E-value=92 Score=28.88 Aligned_cols=78 Identities=18% Similarity=0.196 Sum_probs=43.4
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH-HHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCc
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAE-KEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPG 212 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE-~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPs 212 (250)
+-+...+.+..+++..+|.+++|..++-+....+. ++...=..+.++-+.+|+.+-.....+|.+-..++-.|-.+|.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~ 106 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPW 106 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 44455666677777777777777777666544211 1221122334445555666666666666666555555555543
No 39
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.79 E-value=1.3e+02 Score=27.04 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHH
Q 025643 153 LMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLA 190 (250)
Q Consensus 153 l~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ 190 (250)
.+.+|.++.++++..-+++++.=-.+|++...-++.++
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (487)
T 3oja_A 421 EMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLN 458 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhh
Confidence 33444444455555555555444445554444443333
No 40
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=40.57 E-value=1e+02 Score=22.29 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=38.7
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Q 025643 141 EKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLR 208 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR 208 (250)
.+|+..|+...|........++..+-.+|++...+-..+.+-.+-|+.+-...=+.|.+.......|.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555566555555555555555554443
No 41
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=40.47 E-value=92 Score=21.74 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=32.7
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHH
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETEL 179 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkL 179 (250)
-+..-..+|.+|...||.++.+...|..-+..|.+|-.|.-.-|
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556678888888999999888888887777777766654433
No 42
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=40.05 E-value=1.5e+02 Score=25.22 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=12.8
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHHc
Q 025643 146 ELNLSGELMKKESKKLLERAALAEKEMIR 174 (250)
Q Consensus 146 eLr~svdl~k~Es~KL~eraa~AE~Em~R 174 (250)
.++..++.++.+.+..+.....|+.++.|
T Consensus 73 ~~~a~l~~~~a~l~~a~~~~~~a~~~~~r 101 (341)
T 3fpp_A 73 EVEATLMELRAQRQQAEAELKLARVTYSR 101 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444445544444
No 43
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=39.52 E-value=1.5e+02 Score=26.39 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=41.4
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHH------HHHHHHHHHHHchHHHHHHHHHHHHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLL------ERAALAEKEMIRGETELKNAGNQVQRLAK 191 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~------eraa~AE~Em~RGrtkLr~aG~qIq~L~s 191 (250)
+...|.+|...|.--+-+..++.||. .++...|.|+.|...+...+-.||-++=+
T Consensus 99 IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 99 IRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 34456666667766677777777776 67888899999999888888888876633
No 44
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=39.45 E-value=1.6e+02 Score=24.78 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=49.9
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 025643 136 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 198 (250)
Q Consensus 136 ll~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~ 198 (250)
-+......++++..+++......+...+.+..+.+....|...+.+....++.|..++-+|..
T Consensus 8 ~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~~I~~ 70 (227)
T 1qu7_A 8 SLEQTAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIAD 70 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888888888888888888889999999988888888887766655543
No 45
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=38.76 E-value=2.5e+02 Score=26.88 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=24.0
Q ss_pred HhhhhhccHH--HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHH
Q 025643 125 HTFGRLRSEE--AMFVRAEKNVNELNLSGELMKKESKKLLERAA 166 (250)
Q Consensus 125 ~TlgRF~SEE--all~~Ae~kV~eLr~svdl~k~Es~KL~eraa 166 (250)
+...|+...+ +-+...+.+..+++..+|.+++|...+-+...
T Consensus 25 ~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~ 68 (484)
T 3lss_A 25 SQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVG 68 (484)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445565543 34455566666666666666666666655443
No 46
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=38.71 E-value=2.4e+02 Score=26.45 Aligned_cols=77 Identities=9% Similarity=0.063 Sum_probs=43.3
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHH---HHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCC
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEK---EMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIP 211 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~---Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LP 211 (250)
+-+...+.+..++...+|.+++|..++.+....+-+ +...=..+.++-+.+|+.+-.....+|.+-..++-.|-.+|
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 344556666667777777777777666666543211 11111233444555666666666666666666665555555
No 47
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=38.24 E-value=2.7e+02 Score=26.62 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=16.1
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAA 166 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa 166 (250)
+...+.+..+++..+|.+++|..++-+.+.
T Consensus 72 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~ 101 (501)
T 1wle_A 72 IISTWQELRQLREQIRSLEEEKEAVTEAVR 101 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556665555555554443
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.15 E-value=1.7e+02 Score=26.38 Aligned_cols=9 Identities=0% Similarity=-0.020 Sum_probs=4.8
Q ss_pred HhhcchhhH
Q 025643 96 AREHPAAAT 104 (250)
Q Consensus 96 A~ehP~~a~ 104 (250)
...||.+..
T Consensus 335 ~i~HrNLV~ 343 (487)
T 3oja_A 335 QARQREIDA 343 (487)
T ss_dssp HHHHHHHHH
T ss_pred cccccchhh
Confidence 345666554
No 49
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.83 E-value=99 Score=28.54 Aligned_cols=38 Identities=18% Similarity=0.048 Sum_probs=17.7
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHH
Q 025643 145 NELNLSGELMKKESKKLLERAALAEKEMIRGETELKNA 182 (250)
Q Consensus 145 ~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~a 182 (250)
..++..++.++.|.++|++....+|.++..=..+|+..
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 50
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=36.43 E-value=1.4e+02 Score=22.64 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=46.4
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHH---HHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEK---EMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGL 207 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~---Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~L 207 (250)
.+|..-++||..+=.+|.+++-|.+-|.+.-..... +...++-.|+..-.|++.-... ....-.+|++.+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~---wq~Rl~~LLgk~ 78 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG---WQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHhh
Confidence 578889999999999999999999999876555333 4455666666655555544332 233444444443
No 51
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=36.32 E-value=1.3e+02 Score=26.13 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=33.9
Q ss_pred hhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHH
Q 025643 129 RLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELK 180 (250)
Q Consensus 129 RF~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr 180 (250)
|+.+-+-++..-+.+..-|++.++....|++.|+++.+.++.+...-.+.+.
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 3444455666677777777778888888888888888888887765444443
No 52
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=36.14 E-value=2.2e+02 Score=25.40 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=18.0
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHH
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERA 165 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~era 165 (250)
.-++++++|+...+.+..|+++|+...
T Consensus 182 ~~~~eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 182 VDAFKLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777777777777775443
No 53
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=35.59 E-value=56 Score=26.96 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=26.8
Q ss_pred HHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCc---hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025643 172 MIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPG---REALKLRAEVASMASLLKRQRAMMDKQIMKISE 245 (250)
Q Consensus 172 m~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPs---reA~~LRsEVAs~AS~lK~qR~aL~k~l~KIs~ 245 (250)
++--.+||..|-..=+++-.+.-..|.++..+-+.|.++-. -+--.||=++-||=+.+|-+|.+....=+|.+.
T Consensus 11 LqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAq 87 (130)
T 3cl3_D 11 LQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQ 87 (130)
T ss_dssp ----------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555556666666666655443 355678999999999999999988876666554
No 54
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=35.17 E-value=1e+02 Score=26.41 Aligned_cols=45 Identities=9% Similarity=-0.014 Sum_probs=31.3
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHH
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETEL 179 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkL 179 (250)
.|+.-|++.|+.|+..+|.+..|+....++-..-.++|..-.++|
T Consensus 128 eli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~eL 172 (175)
T 3mud_A 128 ELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLEL 172 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367789999999998888888777666666555555554444333
No 55
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.67 E-value=1.6e+02 Score=22.82 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=8.9
Q ss_pred HHhHHHHHHhHHhhHHHHHHH
Q 025643 141 EKNVNELNLSGELMKKESKKL 161 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL 161 (250)
...+.+|+..+..+..|++-+
T Consensus 35 k~Ei~elrr~iq~L~~el~~l 55 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNV 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 56
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=34.21 E-value=1.1e+02 Score=22.92 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=24.3
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025643 139 RAEKNVNELNLSGELMKKESKKLLERAALAEKEM 172 (250)
Q Consensus 139 ~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em 172 (250)
..|.+|+.|..++|.++.-..+|+--...++.-+
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KL 37 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKL 37 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999888888875444443333
No 57
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=31.87 E-value=18 Score=31.55 Aligned_cols=33 Identities=18% Similarity=0.494 Sum_probs=24.2
Q ss_pred cccccCCCCchhHHHHHHHHHHHHHHHHHhhhH
Q 025643 27 LFHLSSNPPGFWFGLVSSIFLLILVYLIFSHSF 59 (250)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (250)
+-.+..+.|-+|+.++...++..++|++.-+.+
T Consensus 47 i~e~~nplp~ww~~~f~~~iv~~~~y~~~yp~~ 79 (311)
T 3mk7_C 47 IEEYDNPLPRWWFLLFIGTLVFGILYLVLYPGL 79 (311)
T ss_dssp BCBCCCCCCHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred hhhccCCCChHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334556668888888877777888898887743
No 58
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=31.30 E-value=38 Score=28.90 Aligned_cols=39 Identities=15% Similarity=0.391 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCch
Q 025643 175 GETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 175 GrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsr 213 (250)
|-+.+++-...|..+.+.+|.+|+.-+..+.-++++|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ta 43 (166)
T 2r32_A 5 GGSRMKQIEDKIEEILSKIYHIENEIARIKKLIGERETA 43 (166)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 456677888889999999999999999999999998875
No 59
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.03 E-value=1.5e+02 Score=23.05 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=7.3
Q ss_pred HHhHHHHHHhHHhhHHHHHHH
Q 025643 141 EKNVNELNLSGELMKKESKKL 161 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL 161 (250)
...+.+||..+..+..|++.+
T Consensus 37 k~Ei~elrr~iq~L~~el~~l 57 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQ 57 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 60
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.75 E-value=91 Score=24.42 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=29.8
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHc
Q 025643 142 KNVNELNLSGELMKKESKKLLERAALAEKEMIR 174 (250)
Q Consensus 142 ~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~R 174 (250)
..|..|++.||-+..|..+|.++...-|-++-+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999988888865
No 61
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=30.48 E-value=7.1 Score=32.84 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=39.6
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcccCCch
Q 025643 141 EKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~s--svyK~E~~A~gL~d~LR~LPsr 213 (250)
+.+++.+...++.+++|.+.+ +++++|-..++-|-.+..++-.. .-|.+|+-+..|+..+..|.+.
T Consensus 18 ~~e~~~l~~~~~~l~~e~~e~-------~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerA 85 (177)
T 3a6m_A 18 GQEAQALEERLKAAEEELKGL-------KDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDDLDRA 85 (177)
T ss_dssp HHHHSSTTTSTTGGGGTSSSH-------HHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344444444444444444444 45556666665555555555433 3467899999999988888775
No 62
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=30.23 E-value=63 Score=21.10 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.4
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHH
Q 025643 138 VRAEKNVNELNLSGELMKKESKKLLE 163 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~KL~e 163 (250)
+.-|.||++|-..-..+.+|..+|.+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35578999999999999999888865
No 63
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=30.05 E-value=1.1e+02 Score=27.62 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=36.9
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHH
Q 025643 141 EKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV 196 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~ 196 (250)
+.-.++|++.++.+.+|..|++++.. ...+-++=.+++++.-+||.+.-+.++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 246 DEYIKELNEERDILNKDLNKALKDIE-KRPENKKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777776662 11122344688889999999988877754
No 64
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.04 E-value=86 Score=20.80 Aligned_cols=28 Identities=18% Similarity=0.187 Sum_probs=21.4
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLER 164 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~er 164 (250)
.+.-+.+|++|-..-..+.+|..+|.+-
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3566788888888888888888887654
No 65
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=29.76 E-value=2.6e+02 Score=23.87 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=13.8
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAA 166 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa 166 (250)
+..++++..+|+..++.++.|...+.++..
T Consensus 51 L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 51 LVQAEQRNRDLQADNQRLKYEVEALKEKLE 80 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333
No 66
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.56 E-value=2.1e+02 Score=24.44 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=10.3
Q ss_pred HHHchHHHHHHHHHHHHHHHHHH
Q 025643 171 EMIRGETELKNAGNQVQRLAKQV 193 (250)
Q Consensus 171 Em~RGrtkLr~aG~qIq~L~ssv 193 (250)
++..-++++.++..+++.+-..+
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l 138 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENI 138 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555554444443333
No 67
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=29.40 E-value=1.1e+02 Score=22.92 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=35.2
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHH
Q 025643 144 VNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ 192 (250)
Q Consensus 144 V~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ss 192 (250)
.+++-+.+..+..+-+-|++++...|.++...+.+=.....+++++...
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666677777788888888888888887777777777776544
No 68
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=28.67 E-value=2.3e+02 Score=22.75 Aligned_cols=70 Identities=10% Similarity=0.076 Sum_probs=35.7
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHH---HHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccC
Q 025643 141 EKNVNELNLSGELMKKESKKLLE---RAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI 210 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL~e---raa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~L 210 (250)
-.+|++++..++.++.-.+.+.+ ++..+-.+...+..++...-.+|..++..+...-.....+.+....+
T Consensus 46 ~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i 118 (279)
T 3c98_B 46 FEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGL 118 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34566666666666655544433 32222233344555566666666666666555444444444444333
No 69
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=28.21 E-value=1.6e+02 Score=20.97 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=35.3
Q ss_pred hccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025643 130 LRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEM 172 (250)
Q Consensus 130 F~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em 172 (250)
=.|.-+++..|-.=++.|+..++.+..|...|.+....-+.++
T Consensus 35 k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 35 KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999888888888877766655544
No 70
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.20 E-value=1.5e+02 Score=27.31 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=25.8
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHH
Q 025643 141 EKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 189 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L 189 (250)
+.++++|++..+.+..+.++++++....++++......-|.--++|+.+
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555555555555555555555555555555555555555555544
No 71
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.20 E-value=1.3e+02 Score=27.90 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=45.8
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH---HHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCC
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAE---KEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIP 211 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE---~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LP 211 (250)
+-+...+.+..+++..+|.+++|..++-+....+- ++...=..+.++-+.+|+.+-.....+|.+-..++-.|-.+|
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 109 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLP 109 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34455666677777777777777776666554310 111111334555666677777777777777766666665555
No 72
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=28.10 E-value=1.8e+02 Score=21.47 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=33.1
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHH
Q 025643 146 ELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ 192 (250)
Q Consensus 146 eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ss 192 (250)
++-+.+..+..+-+-|++++...|.++...+.+=.....+++++...
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666777788888888888888777777776777666543
No 73
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=27.85 E-value=32 Score=33.28 Aligned_cols=33 Identities=30% Similarity=0.191 Sum_probs=18.9
Q ss_pred hccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHH
Q 025643 130 LRSEEAMFVRAEKNVNELNLSGELMKKESKKLL 162 (250)
Q Consensus 130 F~SEEall~~Ae~kV~eLr~svdl~k~Es~KL~ 162 (250)
+..|...=..||++-.+|...+..+..|.++.+
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (575)
T 2i1j_A 323 LQLEIAARERAEKKQQEYQDRLRQMQEEMERSQ 355 (575)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666665555555543
No 74
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=27.39 E-value=2.4e+02 Score=22.59 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=44.0
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ 192 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ss 192 (250)
...-++.++++...+..+|.|+..++.+...++++...=+-++..--+++..|-..
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888888888888887777777777777777543
No 75
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=27.24 E-value=2.6e+02 Score=22.94 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=26.9
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHH---HHHHHHHHHHHchHHHHHHHHHHHH
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLL---ERAALAEKEMIRGETELKNAGNQVQ 187 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~---eraa~AE~Em~RGrtkLr~aG~qIq 187 (250)
+-+..|+++++..+..++..+.+.++.+ ++=+..+.++..-++++.++..+++
T Consensus 60 ~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~ 115 (277)
T 2f1m_A 60 ATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVT 115 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666655543 1112333444444444444444443
No 76
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.12 E-value=1.4e+02 Score=27.83 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=38.9
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHH
Q 025643 148 NLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQV 193 (250)
Q Consensus 148 r~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssv 193 (250)
.+..+.++.|.+++++.|..+|+.|..-.-|+.+.--+=|+|..++
T Consensus 9 ~~e~~~~~~~~~~vq~kA~~~E~~Yn~~~dKmeqE~lrRRkLENSI 54 (333)
T 4etp_B 9 EKEIAALEKEIAALEKEISKQEKFYNDTYNTVCKELLRSRRLENSI 54 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3445889999999999999999999999999988877777776665
No 77
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.91 E-value=1.8e+02 Score=27.03 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=10.5
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 025643 144 VNELNLSGELMKKESKKLLERAALAEKE 171 (250)
Q Consensus 144 V~eLr~svdl~k~Es~KL~eraa~AE~E 171 (250)
+.++++..+.+..+.+.+++.....+++
T Consensus 12 l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 12 VVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 78
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.67 E-value=4.2e+02 Score=25.23 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=34.6
Q ss_pred HHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025643 190 AKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKISELG 247 (250)
Q Consensus 190 ~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR~aL~k~l~KIs~~G 247 (250)
.+.+-+.|+....+.++|| ++-.-|+.-|....-.++.-|.+|++-+.||-++=
T Consensus 101 ~~q~~dndn~~~e~s~eLe----~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 101 FAKANNNDNTFKQINEDLR----SRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHhhccchHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666665 35556666676666677777777777777766543
No 79
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=25.48 E-value=4.6e+02 Score=25.20 Aligned_cols=46 Identities=9% Similarity=-0.046 Sum_probs=20.6
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHH
Q 025643 148 NLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQV 193 (250)
Q Consensus 148 r~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssv 193 (250)
+.+++.|++....+......|+.=++.=..++++..+|+...+..+
T Consensus 99 ~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~ 144 (464)
T 1m1j_B 99 KPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIIL 144 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHH
Confidence 3444444444444444444433333333344555555555554433
No 80
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.14 E-value=1.1e+02 Score=23.53 Aligned_cols=31 Identities=29% Similarity=0.144 Sum_probs=26.9
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 025643 141 EKNVNELNLSGELMKKESKKLLERAALAEKE 171 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL~eraa~AE~E 171 (250)
+.+..|....+|.++.|+.|++.-++.+|..
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6788899999999999999999988777654
No 81
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.57 E-value=2e+02 Score=26.29 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=25.6
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 025643 150 SGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVE 197 (250)
Q Consensus 150 svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E 197 (250)
.+..+..|+.+++..+...|.+++.=+..|.+...+|+.|-..+-..+
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566666666666666655555555555555555544444333
No 82
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=24.34 E-value=11 Score=34.48 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=8.9
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHH
Q 025643 135 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQR 188 (250)
Q Consensus 135 all~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~ 188 (250)
+-+..+++++++|++..|....+.+.++.+++.+|.++. .||..-..+.+.
T Consensus 333 ~~~~~~~~~~~e~~kklee~~~~r~e~~~~~~~~e~~~~---~~~~~~~~~~~~ 383 (386)
T 2bnx_A 333 TKVEKSEAKATELEKKLDSELTARHELQVEMKKMENDFE---QKLQDLQGEKDA 383 (386)
T ss_dssp THHHHHHTTTCC------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 345578888999999999999999998888888888873 555555444443
No 83
>3ub0_A Non-structural protein 6, NSP6,; feline coronavirus, primer-independen polymerase, replication; 2.60A {Feline infectious peritonitis virus}
Probab=24.30 E-value=2e+02 Score=25.13 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=35.5
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhh
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQ 199 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~ 199 (250)
+..|++.+++-...- .--.+.++|++..-.|..||-|-.+-=|---+-=..-..++||-+|.
T Consensus 19 YE~A~~~Ye~a~~ng-~~pQ~~Kql~KA~NIAKse~drd~avqrKLerMAe~Amt~MYKeARa 80 (199)
T 3ub0_A 19 YEKARADLEEAKKND-VSPQLLKQLTKACNIAKSEFEREASVQKKLDKMAEQAAASMYKEARA 80 (199)
T ss_dssp HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666554333 33478888888888998888887654332222222235667775543
No 84
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=24.08 E-value=94 Score=23.15 Aligned_cols=19 Identities=32% Similarity=0.281 Sum_probs=14.8
Q ss_pred hHHhhHHHHHHHHHHHHHH
Q 025643 150 SGELMKKESKKLLERAALA 168 (250)
Q Consensus 150 svdl~k~Es~KL~eraa~A 168 (250)
.++.+|+|.+||..+|..+
T Consensus 4 di~eLkkevkKL~~~A~q~ 22 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATAL 22 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5677889999998887654
No 85
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=23.52 E-value=2.5e+02 Score=24.45 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=43.0
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHH
Q 025643 142 KNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ 192 (250)
Q Consensus 142 ~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ss 192 (250)
..++.|+.+...+-.-..-|.+-....|+|=.||-..|.++-.+|+...+.
T Consensus 139 ~~~~~Lk~sak~~~~nV~sLl~tV~~v~de~~rG~raLe~~i~~I~~el~~ 189 (199)
T 3fyq_A 139 PSMQDLKESARVMVLNVSSLLKTVKAVEDEHTRGTRAMEATVEAISQEIRA 189 (199)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHH
Confidence 347788888888888888888899999999999999999999999776543
No 86
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.51 E-value=2.6e+02 Score=21.68 Aligned_cols=30 Identities=7% Similarity=0.039 Sum_probs=13.4
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q 025643 141 EKNVNELNLSGELMKKESKKLLERAALAEK 170 (250)
Q Consensus 141 e~kV~eLr~svdl~k~Es~KL~eraa~AE~ 170 (250)
...+..|.-.++.+++--..|+..++-+|.
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 87
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.18 E-value=1.2e+02 Score=23.61 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=5.5
Q ss_pred HHhhHHHHHHHHHH
Q 025643 151 GELMKKESKKLLER 164 (250)
Q Consensus 151 vdl~k~Es~KL~er 164 (250)
...+++|.++|..+
T Consensus 41 ~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 41 WKDQRKEIERLKSV 54 (171)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 88
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=23.11 E-value=3.1e+02 Score=23.08 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=33.3
Q ss_pred HHHHchHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHhcccCCch
Q 025643 170 KEMIRGETELKNAGNQVQRLAKQ--VYKVETQAADLMEGLREIPGR 213 (250)
Q Consensus 170 ~Em~RGrtkLr~aG~qIq~L~ss--vyK~E~~A~gL~d~LR~LPsr 213 (250)
..++|-..++-|-.+..++-... -|.+|+-+..|+..+..|.+.
T Consensus 60 d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerA 105 (197)
T 1dkg_A 60 DGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRA 105 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 46777777777777766666544 456799999999988888765
No 89
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=23.06 E-value=1.3e+02 Score=20.00 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=25.2
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 025643 143 NVNELNLSGELMKKESKKLLERAALAEKEMI 173 (250)
Q Consensus 143 kV~eLr~svdl~k~Es~KL~eraa~AE~Em~ 173 (250)
.++..+..+..+|.|-+..+||+..+|.+..
T Consensus 4 ~MdAIKKKMq~lK~ekd~A~drAe~~E~~~k 34 (40)
T 2z5i_I 4 SMDAIKKKMQMLKLDKENALDRAEQLENEVA 34 (40)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3456678888899999999999999998764
No 90
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.99 E-value=5.3e+02 Score=25.06 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=15.4
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025643 140 AEKNVNELNLSGELMKKESKKLLERAALAEKEM 172 (250)
Q Consensus 140 Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em 172 (250)
.|+++++=+...+....|-+.|+++...-|.-|
T Consensus 485 ~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~ 517 (592)
T 1f5n_A 485 KEKEIEVERVKAESAQASAKMLHEMQRKNEQMM 517 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555544444333333
No 91
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=22.92 E-value=30 Score=27.34 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=19.4
Q ss_pred HhcccCCchhHHhHHHHHHHHHH
Q 025643 205 EGLREIPGREALKLRAEVASMAS 227 (250)
Q Consensus 205 d~LR~LPsreA~~LRsEVAs~AS 227 (250)
+.+|+||+.++++|.+.+..++-
T Consensus 80 EVIRqIPpEe~L~l~~~l~e~~G 102 (117)
T 2hc5_A 80 EVIREIPPKRWLDFYAAMTEFLG 102 (117)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHH
T ss_pred cEEEeCChHHHHHHHHHHHHhhc
Confidence 56899999999999988877654
No 92
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=22.45 E-value=1.5e+02 Score=19.33 Aligned_cols=26 Identities=12% Similarity=-0.033 Sum_probs=21.3
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHH
Q 025643 138 VRAEKNVNELNLSGELMKKESKKLLE 163 (250)
Q Consensus 138 ~~Ae~kV~eLr~svdl~k~Es~KL~e 163 (250)
+.-|.||++|-.....+.+|..+|.+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 56688899998888888888888764
No 93
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.18 E-value=3.4e+02 Score=22.54 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025643 182 AGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKI 243 (250)
Q Consensus 182 aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~~LRsEVAs~AS~lK~qR~aL~k~l~KI 243 (250)
-..++...-..=..+|+.-..+=..|.+|- ..|=.|+-.|+++.+.+|..+.++..+.
T Consensus 63 L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT----asLFeEAN~MVa~ar~~~~~~e~r~~~L 120 (154)
T 2ocy_A 63 LREDIAKENELRTKAEEEADKLNKEVEDLT----ASLFDEANNMVADARKEKYAIEILNKRL 120 (154)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555665555555555553 4567889999999999999998776654
No 94
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=21.70 E-value=30 Score=26.36 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=8.8
Q ss_pred hhhhhcccccccccccCCCCchhH
Q 025643 16 CHSLSSFFPTQLFHLSSNPPGFWF 39 (250)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~ 39 (250)
-|.+||.|| +||-||=
T Consensus 7 ~n~isSlfP--------pPPPf~K 22 (84)
T 3fbi_A 7 GNEVSSLYP--------PPPPYVK 22 (84)
T ss_dssp -----CCSC--------CCCGGGG
T ss_pred ccccccCCC--------CCCchhh
Confidence 467888887 6898983
No 95
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.54 E-value=2.8e+02 Score=25.32 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 025643 158 SKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEG 206 (250)
Q Consensus 158 s~KL~eraa~AE~Em~RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~ 206 (250)
+++|+|.+..=|...++-.++++.-..+|.++-+.+-+.+.+...|++.
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444333
No 96
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=21.50 E-value=1.3e+02 Score=22.33 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=25.9
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHHc
Q 025643 146 ELNLSGELMKKESKKLLERAALAEKEMIR 174 (250)
Q Consensus 146 eLr~svdl~k~Es~KL~eraa~AE~Em~R 174 (250)
+|...++.+.+|-+-|.++.-.+++|+.+
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~ 31 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKL 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999999988876
No 97
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=21.27 E-value=67 Score=26.99 Aligned_cols=21 Identities=0% Similarity=-0.051 Sum_probs=13.0
Q ss_pred HHHHHHhHhhccchhHHHHHH
Q 025643 105 GVALTAGLLFMRGPRRFLFRH 125 (250)
Q Consensus 105 g~a~~agllll~gPRRfLyr~ 125 (250)
......|++++-=|=..+.-+
T Consensus 218 ~~~~i~~~~~lnl~~aii~~~ 238 (285)
T 3rvy_A 218 PFIFVVTFVMINLVVAICVDA 238 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444456677777677777644
No 98
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.23 E-value=3.9e+02 Score=22.83 Aligned_cols=22 Identities=9% Similarity=-0.049 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHchHHHHHHHHH
Q 025643 163 ERAALAEKEMIRGETELKNAGN 184 (250)
Q Consensus 163 eraa~AE~Em~RGrtkLr~aG~ 184 (250)
.+....+.|...-++|+.+...
T Consensus 63 ~~~~~L~~E~e~~k~K~~~~~~ 84 (189)
T 2v71_A 63 ADNQRLKYEVEALKEKLEHQYA 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444333
No 99
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=20.93 E-value=53 Score=21.22 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhHHHHHHhcc
Q 025643 187 QRLAKQVYKVETQAADLMEGLR 208 (250)
Q Consensus 187 q~L~ssvyK~E~~A~gL~d~LR 208 (250)
.++.++++|+|+|....=..|.
T Consensus 6 ~Sm~~Rl~kVE~qv~~md~KLd 27 (33)
T 2ovc_A 6 ISMMGRVVKVEKQVQSIEHKLD 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999998776544443
No 100
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=20.88 E-value=2.6e+02 Score=27.26 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=36.6
Q ss_pred HHHhhHHHHHH-hcccCCchhHHhHHHHHHHHHHHHHHHHHHHH
Q 025643 195 KVETQAADLME-GLREIPGREALKLRAEVASMASLLKRQRAMMD 237 (250)
Q Consensus 195 K~E~~A~gL~d-~LR~LPsreA~~LRsEVAs~AS~lK~qR~aL~ 237 (250)
-.|.||..+++ .|+.|-.-+..+|+.|...+..+++.-+..|.
T Consensus 435 lse~qa~~IL~m~L~rLT~~e~~kl~~E~~~l~~ei~~l~~iL~ 478 (514)
T 2inr_A 435 FTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILD 478 (514)
T ss_dssp CCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 36889999998 79999999999999999988888887777766
No 101
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=20.77 E-value=1.7e+02 Score=19.20 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=20.5
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHH
Q 025643 137 FVRAEKNVNELNLSGELMKKESKKLLE 163 (250)
Q Consensus 137 l~~Ae~kV~eLr~svdl~k~Es~KL~e 163 (250)
.+.-+.||+||-..-..+.+|..+|.+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456677888888888888888877754
No 102
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=20.69 E-value=86 Score=24.56 Aligned_cols=43 Identities=14% Similarity=0.075 Sum_probs=22.7
Q ss_pred hccHHHHHHHHHHhHH----HHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025643 130 LRSEEAMFVRAEKNVN----ELNLSGELMKKESKKLLERAALAEKEM 172 (250)
Q Consensus 130 F~SEEall~~Ae~kV~----eLr~svdl~k~Es~KL~eraa~AE~Em 172 (250)
++.++++++.+....+ ++...++.+..|.+.+++.......++
T Consensus 9 ~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 9 VEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556655555442 555556666666555555554444443
No 103
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=20.58 E-value=2.1e+02 Score=23.39 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccCCchhHH
Q 025643 174 RGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREAL 216 (250)
Q Consensus 174 RGrtkLr~aG~qIq~L~ssvyK~E~~A~gL~d~LR~LPsreA~ 216 (250)
......++-+..-+..+..-|..|+.+..+.+.++++++.+..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~r~~~~ 385 (394)
T 3okp_A 343 DDPIRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSEPRKLAA 385 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSCCC----
T ss_pred hCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccCcch
Confidence 3344445555556667777899999999999999999987654
No 104
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.38 E-value=2.8e+02 Score=20.98 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=31.3
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 025643 134 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 173 (250)
Q Consensus 134 Eall~~Ae~kV~eLr~svdl~k~Es~KL~eraa~AE~Em~ 173 (250)
+.-..-.+++++.++..++.+.++.+++.++...-+++++
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677888899999999998888888888877766654
Done!