BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025644
MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLE
TLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDS
IEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGI
STSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALAS
KATKSLSSRK

High Scoring Gene Products

Symbol, full name Information P value
AT4G26980 protein from Arabidopsis thaliana 7.6e-80

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025644
        (250 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2116307 - symbol:AT4G26980 "AT4G26980" species...   802  7.6e-80   1


>TAIR|locus:2116307 [details] [associations]
            symbol:AT4G26980 "AT4G26980" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009644 "response to high light intensity"
            evidence=RCA] [GO:0042542 "response to hydrogen peroxide"
            evidence=RCA] EMBL:CP002687 GenomeReviews:CT486007_GR
            UniGene:At.22696 UniGene:At.48905 EMBL:BT022012 EMBL:BT024881
            EMBL:AK229050 IPI:IPI00542556 RefSeq:NP_194428.2
            ProteinModelPortal:Q501F5 EnsemblPlants:AT4G26980.1 GeneID:828806
            KEGG:ath:AT4G26980 TAIR:At4g26980 eggNOG:NOG304234
            HOGENOM:HOG000005756 InParanoid:Q501F5 OMA:TLRCGGC PhylomeDB:Q501F5
            ProtClustDB:CLSN2680108 Genevestigator:Q501F5 Uniprot:Q501F5
        Length = 343

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 149/225 (66%), Positives = 177/225 (78%)

Query:     3 LADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETL 62
             LADSSWEILD+SGSDV++FGL KVA++CKSL+AVDIS C++I++ GV E + HC SLETL
Sbjct:    99 LADSSWEILDVSGSDVTNFGLAKVAEICKSLRAVDISRCNKISSMGVLELVQHCRSLETL 158

Query:    63 RCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIE 122
             RCGG P S   ARR L I KP L++VEG++WEE+  ++IGHG QSLRW VWP IDKDS+E
Sbjct:   159 RCGGCPSSESTARRSLSIFKPNLSNVEGETWEEIDTSEIGHGGQSLRWLVWPRIDKDSLE 218

Query:   123 MMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGIST 182
             M+S+ECPRI+VNPKPS   +R  EVPREA PD+ LD+PFV DIDP  W V         T
Sbjct:   219 MLSSECPRIVVNPKPSLVAYRADEVPREALPDVALDEPFVKDIDPKTWVVTGVVQK--PT 276

Query:   183 SLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWM 227
             S    NELS+AEKFRLAF ERD R+APKRAKNARQ QRRAER+WM
Sbjct:   277 SFPLSNELSIAEKFRLAFAERDARMAPKRAKNARQRQRRAERDWM 321


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      250       230   0.00083  113 3  11 22  0.39    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  206 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.47u 0.11s 19.58t   Elapsed:  00:00:01
  Total cpu time:  19.47u 0.11s 19.58t   Elapsed:  00:00:01
  Start:  Mon May 20 23:28:05 2013   End:  Mon May 20 23:28:06 2013

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