Query 025644
Match_columns 250
No_of_seqs 209 out of 742
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:58:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.8 2.4E-22 5.2E-27 191.8 2.7 183 6-195 190-382 (483)
2 KOG4341 F-box protein containi 99.7 2.4E-18 5.1E-23 164.6 4.4 153 8-161 296-460 (483)
3 KOG1947 Leucine rich repeat pr 99.6 1.6E-15 3.4E-20 141.1 8.4 125 6-131 243-389 (482)
4 KOG1947 Leucine rich repeat pr 99.4 1.7E-13 3.7E-18 127.5 5.5 128 6-133 188-325 (482)
5 KOG2120 SCF ubiquitin ligase, 98.9 7.3E-10 1.6E-14 103.8 2.0 84 6-90 234-320 (419)
6 cd00116 LRR_RI Leucine-rich re 98.7 4.9E-08 1.1E-12 86.9 8.7 161 6-173 108-291 (319)
7 cd00116 LRR_RI Leucine-rich re 98.6 2.3E-07 5.1E-12 82.5 10.5 125 6-131 137-277 (319)
8 KOG2120 SCF ubiquitin ligase, 98.5 5.2E-08 1.1E-12 91.5 3.8 135 6-143 260-399 (419)
9 smart00367 LRR_CC Leucine-rich 98.4 2.1E-07 4.5E-12 56.3 3.0 26 30-55 1-26 (26)
10 KOG3864 Uncharacterized conser 98.2 1.5E-06 3.2E-11 77.5 3.5 81 7-89 102-182 (221)
11 KOG3864 Uncharacterized conser 98.0 3.8E-06 8.3E-11 74.9 3.5 82 6-88 125-209 (221)
12 KOG3665 ZYG-1-like serine/thre 97.8 4.2E-05 9.2E-10 78.5 7.0 123 6-133 122-279 (699)
13 smart00367 LRR_CC Leucine-rich 97.7 3.9E-05 8.5E-10 46.2 2.7 24 6-29 2-26 (26)
14 KOG1909 Ran GTPase-activating 97.6 6.9E-05 1.5E-09 71.5 4.0 141 29-174 90-255 (382)
15 PF14580 LRR_9: Leucine-rich r 97.5 7.3E-05 1.6E-09 64.6 3.4 119 7-133 20-144 (175)
16 PF14580 LRR_9: Leucine-rich r 97.3 5.9E-05 1.3E-09 65.2 0.4 108 6-119 42-153 (175)
17 PF13516 LRR_6: Leucine Rich r 97.1 0.00037 8E-09 40.9 2.2 24 30-54 1-24 (24)
18 PF12799 LRR_4: Leucine Rich r 96.8 0.0012 2.7E-08 44.5 2.9 36 7-45 2-37 (44)
19 PF13516 LRR_6: Leucine Rich r 96.7 0.0013 2.7E-08 38.6 1.9 23 6-28 2-24 (24)
20 PF12799 LRR_4: Leucine Rich r 96.4 0.0032 6.9E-08 42.5 2.8 39 31-72 1-39 (44)
21 KOG1909 Ran GTPase-activating 96.4 0.0039 8.5E-08 59.7 4.3 119 6-126 185-322 (382)
22 PF13855 LRR_8: Leucine rich r 96.3 0.00021 4.6E-09 50.2 -3.5 60 6-68 1-60 (61)
23 PLN03210 Resistant to P. syrin 96.2 0.0038 8.3E-08 67.2 3.6 59 6-69 778-837 (1153)
24 PLN03210 Resistant to P. syrin 96.2 0.0052 1.1E-07 66.2 4.4 84 6-96 611-694 (1153)
25 KOG3207 Beta-tubulin folding c 95.8 0.0087 1.9E-07 58.9 3.6 61 7-67 122-182 (505)
26 smart00368 LRR_RI Leucine rich 95.7 0.013 2.9E-07 35.9 3.1 24 6-29 2-25 (28)
27 PLN00113 leucine-rich repeat r 95.7 0.01 2.2E-07 61.7 4.2 36 6-41 93-128 (968)
28 KOG3207 Beta-tubulin folding c 95.2 0.011 2.3E-07 58.4 2.2 41 187-229 335-379 (505)
29 PLN00113 leucine-rich repeat r 94.7 0.034 7.3E-07 57.9 4.3 63 6-70 69-131 (968)
30 smart00368 LRR_RI Leucine rich 94.6 0.053 1.1E-06 33.2 3.3 25 31-56 2-26 (28)
31 KOG2739 Leucine-rich acidic nu 94.5 0.017 3.7E-07 53.2 1.5 79 6-88 65-148 (260)
32 KOG3665 ZYG-1-like serine/thre 94.0 0.14 3.1E-06 53.0 7.0 84 6-90 148-257 (699)
33 COG5238 RNA1 Ran GTPase-activa 91.4 0.57 1.2E-05 44.5 6.5 169 4-176 28-258 (388)
34 PLN03150 hypothetical protein; 91.2 0.24 5.2E-06 50.3 4.2 78 8-90 420-497 (623)
35 KOG2739 Leucine-rich acidic nu 91.0 0.078 1.7E-06 48.9 0.4 51 21-71 53-105 (260)
36 KOG4194 Membrane glycoprotein 89.9 0.099 2.2E-06 53.7 0.1 13 29-41 315-327 (873)
37 KOG2982 Uncharacterized conser 89.7 0.24 5.1E-06 47.5 2.5 78 8-88 47-126 (418)
38 PF13855 LRR_8: Leucine rich r 89.5 0.07 1.5E-06 37.2 -0.9 36 6-42 25-60 (61)
39 KOG4308 LRR-containing protein 88.2 0.18 3.8E-06 50.1 0.5 63 6-69 115-184 (478)
40 KOG2123 Uncharacterized conser 87.3 0.19 4.1E-06 47.7 0.1 101 58-166 20-131 (388)
41 KOG4308 LRR-containing protein 86.4 0.31 6.7E-06 48.4 1.1 66 6-72 204-277 (478)
42 KOG2123 Uncharacterized conser 84.9 0.93 2E-05 43.2 3.4 84 6-92 19-126 (388)
43 PLN03150 hypothetical protein; 84.1 1.5 3.2E-05 44.7 4.8 36 32-69 419-454 (623)
44 PF13504 LRR_7: Leucine rich r 81.4 0.89 1.9E-05 24.8 1.1 11 32-42 2-12 (17)
45 COG5238 RNA1 Ran GTPase-activa 81.0 2.5 5.4E-05 40.3 4.6 82 6-88 185-277 (388)
46 PF00560 LRR_1: Leucine Rich R 80.9 0.67 1.5E-05 26.6 0.6 13 32-45 1-13 (22)
47 KOG1859 Leucine-rich repeat pr 80.6 0.61 1.3E-05 49.3 0.5 33 6-41 187-219 (1096)
48 PRK15386 type III secretion pr 79.6 1.6 3.4E-05 43.1 2.9 12 32-43 73-84 (426)
49 KOG1259 Nischarin, modulator o 79.5 1.1 2.3E-05 43.3 1.7 73 6-89 284-358 (490)
50 KOG4194 Membrane glycoprotein 78.8 0.65 1.4E-05 48.0 0.1 68 6-79 269-341 (873)
51 PRK15387 E3 ubiquitin-protein 78.6 1.1 2.3E-05 47.4 1.5 14 6-19 242-255 (788)
52 KOG1259 Nischarin, modulator o 75.2 3.3 7.2E-05 40.0 3.7 62 6-73 307-368 (490)
53 KOG0618 Serine/threonine phosp 74.6 1.4 3.1E-05 47.3 1.2 37 30-68 451-487 (1081)
54 PRK15386 type III secretion pr 72.0 5.1 0.00011 39.6 4.2 36 6-45 72-108 (426)
55 PRK15387 E3 ubiquitin-protein 70.5 4.8 0.0001 42.6 3.9 34 6-45 222-255 (788)
56 KOG4658 Apoptotic ATPase [Sign 68.4 3.2 6.9E-05 44.4 2.1 128 6-141 717-852 (889)
57 KOG0531 Protein phosphatase 1, 67.0 1.9 4E-05 41.2 0.1 62 6-73 95-156 (414)
58 KOG3763 mRNA export factor TAP 64.1 9.9 0.00021 38.9 4.5 83 6-90 218-308 (585)
59 PRK15370 E3 ubiquitin-protein 63.5 7.1 0.00015 41.1 3.5 33 32-69 263-295 (754)
60 KOG2982 Uncharacterized conser 61.4 6.7 0.00014 37.9 2.6 59 32-90 46-104 (418)
61 PF07723 LRR_2: Leucine Rich R 55.1 9.8 0.00021 22.9 1.7 25 7-31 1-26 (26)
62 PRK15370 E3 ubiquitin-protein 54.9 12 0.00027 39.3 3.6 12 57-68 346-357 (754)
63 KOG1644 U2-associated snRNP A' 51.7 7.6 0.00016 35.3 1.2 104 17-123 48-157 (233)
64 COG4886 Leucine-rich repeat (L 48.3 13 0.00029 34.6 2.3 58 7-69 141-198 (394)
65 KOG0531 Protein phosphatase 1, 48.2 4.2 9.2E-05 38.8 -1.0 73 6-88 118-191 (414)
66 smart00370 LRR Leucine-rich re 43.4 18 0.00038 20.9 1.6 12 7-18 3-14 (26)
67 smart00369 LRR_TYP Leucine-ric 43.4 18 0.00038 20.9 1.6 12 7-18 3-14 (26)
68 KOG4658 Apoptotic ATPase [Sign 42.5 17 0.00038 39.0 2.4 14 54-67 639-652 (889)
69 KOG0618 Serine/threonine phosp 41.4 24 0.00051 38.5 3.1 37 6-43 452-488 (1081)
70 KOG4237 Extracellular matrix p 27.2 40 0.00086 33.7 1.9 59 6-71 274-336 (498)
71 KOG3735 Tropomodulin and leiom 26.1 81 0.0017 30.6 3.7 69 5-73 197-271 (353)
72 KOG1644 U2-associated snRNP A' 23.9 63 0.0014 29.6 2.4 81 27-113 38-120 (233)
73 PF11661 DUF2986: Protein of u 22.6 57 0.0012 22.5 1.5 17 186-202 27-43 (44)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.85 E-value=2.4e-22 Score=191.77 Aligned_cols=183 Identities=19% Similarity=0.277 Sum_probs=149.4
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 84 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~ 84 (250)
+.|++|+|.+| .|||..|++++++||+|+|||+|||++|++.||+.+.++|.+|+.+.+.||....+.++..++.+|+-
T Consensus 190 ~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~ 269 (483)
T KOG4341|consen 190 RKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLE 269 (483)
T ss_pred chhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChH
Confidence 56888999998 89999999999999999999999999999999999999999999888889988888888899999998
Q ss_pred CceecCCchhhhh---hhccccccccccccc---cCCCCHHHHHHHHhcCCCcee--cCCCCCCCcCCccCCCCCCCCCc
Q 025644 85 LNDVEGDSWEELV---NTDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIV--NPKPSPFGFRGFEVPREAFPDIT 156 (250)
Q Consensus 85 L~~L~~~s~~dl~---~~~i~~g~~~L~~L~---c~~ITD~sL~~La~~Cp~L~~--~~~cs~~~~~g~~~~~~~l~~~~ 156 (250)
+-.+++++|.+++ ...++.||+.||.|+ |.++||..+.++.++|++|++ ...|++|+++|... +.
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~-------l~ 342 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM-------LG 342 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh-------hh
Confidence 8888877765444 455899999999985 899999999999999999999 66699999887653 45
Q ss_pred CCCccccccCcCccc-ccCCcccccccCCCCCCCchHHHH
Q 025644 157 LDDPFVNDIDPSAWA-VPRFASMGISTSLLSPNELSMAEK 195 (250)
Q Consensus 157 l~~~~~~~i~~~~w~-~~~~~~r~~~~~~~~~~~l~~ae~ 195 (250)
-.+++++++|.+.+- ..+.+....++--+.++.+|+-|+
T Consensus 343 rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshc 382 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHC 382 (483)
T ss_pred cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhh
Confidence 567788888887766 334445555555556666666543
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.72 E-value=2.4e-18 Score=164.58 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=120.7
Q ss_pred cCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCc
Q 025644 8 WEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 86 (250)
Q Consensus 8 L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~ 86 (250)
|++|+.++| ++||..+.++.++|++|+.|-|++|.+.||.|+..|+++|+.|+.|++.+|..+.|..+..++.+||.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 577777777 7888888888888888888888888888888888888888888888888887766667778888888888
Q ss_pred eecCCchhhhhhh---c---ccccccccccc---ccCCCCHHHHHHHHhcCCCceecCC--CCCCCcCCccCCCCCCCCC
Q 025644 87 DVEGDSWEELVNT---D---IGHGAQSLRWF---VWPNIDKDSIEMMSTECPRIIVNPK--PSPFGFRGFEVPREAFPDI 155 (250)
Q Consensus 87 ~L~~~s~~dl~~~---~---i~~g~~~L~~L---~c~~ITD~sL~~La~~Cp~L~~~~~--cs~~~~~g~~~~~~~l~~~ 155 (250)
+|..+-|+.++.. . ...+...|+++ +||.|||++|+++. +||+|+.+.. |++++..+++....++|++
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i 454 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNI 454 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccc
Confidence 8866633333322 2 23555666666 59999999999998 8999999554 9999999999999999999
Q ss_pred cCCCcc
Q 025644 156 TLDDPF 161 (250)
Q Consensus 156 ~l~~~~ 161 (250)
++|.-+
T Consensus 455 ~v~a~~ 460 (483)
T KOG4341|consen 455 KVHAYF 460 (483)
T ss_pred eehhhc
Confidence 998644
No 3
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.60 E-value=1.6e-15 Score=141.08 Aligned_cols=125 Identities=25% Similarity=0.359 Sum_probs=100.4
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 84 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~ 84 (250)
.+|+.|||++| .|||.|+.+++..|++|++|.+.+|..+||.|+.++++.|++|++|++++|..+++.++..+..+||+
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~ 322 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPN 322 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcc
Confidence 67899999999 69999999999999999999999999999999999999999999999999988888889999999999
Q ss_pred CceecCCc------hhhhhh------------hccccccccccccc---cCCCCHHHHHHHHhcCCCc
Q 025644 85 LNDVEGDS------WEELVN------------TDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRI 131 (250)
Q Consensus 85 L~~L~~~s------~~dl~~------------~~i~~g~~~L~~L~---c~~ITD~sL~~La~~Cp~L 131 (250)
|+.|...+ ++++.. ..++.+|..|+.+. |. ++|.++..+..+||+|
T Consensus 323 l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 323 LRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL 389 (482)
T ss_pred hhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCccc
Confidence 88863222 222221 11334455554442 55 6777777777788877
No 4
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.41 E-value=1.7e-13 Score=127.49 Aligned_cols=128 Identities=22% Similarity=0.309 Sum_probs=92.1
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCC-CCCcCHHH--HHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhh
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISC-CDRITAAG--VSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL 81 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~-C~~ITD~g--l~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~ 81 (250)
++|+.|.+.+| .|+|.++..++..|++|+.|++++ |..+++.+ ...++..|++|+.|++++|..++|.++.+++..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 56777778888 788888777888888888888877 55566655 555777777777777777776666677777777
Q ss_pred CCCCceecCCch---hhhhhhccccccccccccc---cCCCCHHHHHHHHhcCCCcee
Q 025644 82 KPKLNDVEGDSW---EELVNTDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 82 cp~L~~L~~~s~---~dl~~~~i~~g~~~L~~L~---c~~ITD~sL~~La~~Cp~L~~ 133 (250)
||+|+.|+...+ ++.....++.+|++|+.|+ |..+||.++.+++.+||+|+.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~ 325 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRE 325 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhh
Confidence 777777753333 3334555677777777764 777788888888888887666
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7.3e-10 Score=103.75 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=65.7
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHh-CCCCCEEecCCC-CCCcHHHHHHHhhhC
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLH-CHSLETLRCGGS-PRSNHAARRCLGILK 82 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~-C~~L~~L~l~gC-~~~dd~al~~l~~~c 82 (250)
++|+.|||++| ++|.+|+..+-+.|..|..||||||..-|+. |..++.| -+.|..|+++|| ....+.-+..+...|
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 89999999999 9999999999999999999999999977777 5544433 467777788887 333333455667777
Q ss_pred CCCceecC
Q 025644 83 PKLNDVEG 90 (250)
Q Consensus 83 p~L~~L~~ 90 (250)
|+|.+|..
T Consensus 313 p~l~~LDL 320 (419)
T KOG2120|consen 313 PNLVHLDL 320 (419)
T ss_pred Cceeeecc
Confidence 87777643
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.72 E-value=4.9e-08 Score=86.91 Aligned_cols=161 Identities=12% Similarity=0.078 Sum_probs=96.6
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhc---C-CCCCeEecCCCCCcCHHHHHHHH---HhCCCCCEEecCCCCCCcHHHHHHH
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQM---C-KSLKAVDISCCDRITAAGVSEFL---LHCHSLETLRCGGSPRSNHAARRCL 78 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~---C-~~L~~LdLS~C~~ITD~gl~~La---~~C~~L~~L~l~gC~~~dd~al~~l 78 (250)
.+|++|+|++|.++|.++..+... + ++|+.|++++|. +++.++..+. .+|++|++|++++|...+. ....+
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l 185 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDA-GIRAL 185 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchH-HHHHH
Confidence 458889999888888888776543 3 788999999985 7766655544 4566888889888877654 23333
Q ss_pred hhh---CCCCceecCCch--hhhhhhc---cccccccccccccC--CCCHHHHHHHHhcC----CCcee--cCCCCCCCc
Q 025644 79 GIL---KPKLNDVEGDSW--EELVNTD---IGHGAQSLRWFVWP--NIDKDSIEMMSTEC----PRIIV--NPKPSPFGF 142 (250)
Q Consensus 79 ~~~---cp~L~~L~~~s~--~dl~~~~---i~~g~~~L~~L~c~--~ITD~sL~~La~~C----p~L~~--~~~cs~~~~ 142 (250)
... ++.|++|+...+ .+..... ....+++|+.|... .++|.++..+...+ +.|+. ...| .+++
T Consensus 186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~ 264 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITD 264 (319)
T ss_pred HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCc
Confidence 332 357887754432 2222111 22456677877643 58888888887765 56666 2222 2333
Q ss_pred CCccCCCCCCCCCcCCCccccccCcCccccc
Q 025644 143 RGFEVPREAFPDITLDDPFVNDIDPSAWAVP 173 (250)
Q Consensus 143 ~g~~~~~~~l~~~~l~~~~~~~i~~~~w~~~ 173 (250)
.|.....+.+|.. +.++.++.+.-.++
T Consensus 265 ~~~~~l~~~~~~~----~~L~~l~l~~N~l~ 291 (319)
T cd00116 265 DGAKDLAEVLAEK----ESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHHHHHhcC----CCccEEECCCCCCc
Confidence 2332222333333 45555555554443
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.64 E-value=2.3e-07 Score=82.55 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=90.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHH---hcCCCCCeEecCCCCCcCHHHHHHHHHhCC---CCCEEecCCCCCCcHHH--HHH
Q 025644 6 SSWEILDISGSDVSDFGLVKVA---QMCKSLKAVDISCCDRITAAGVSEFLLHCH---SLETLRCGGSPRSNHAA--RRC 77 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la---~~C~~L~~LdLS~C~~ITD~gl~~La~~C~---~L~~L~l~gC~~~dd~a--l~~ 77 (250)
.+|+.|+|++|.+++.++..+. .++++|++|++++| ++++.++..++..++ +|++|++++|...+... +..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 215 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE 215 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence 5899999999999977766655 45778999999998 599999988876555 99999999997665532 222
Q ss_pred HhhhCCCCceecCCc--hhhhhhhccccc----cccccccc--cCCCCHHHHHHHHhcCCCc
Q 025644 78 LGILKPKLNDVEGDS--WEELVNTDIGHG----AQSLRWFV--WPNIDKDSIEMMSTECPRI 131 (250)
Q Consensus 78 l~~~cp~L~~L~~~s--~~dl~~~~i~~g----~~~L~~L~--c~~ITD~sL~~La~~Cp~L 131 (250)
....+|+|++|+... ..+.....++.+ ...|+.|+ .-.|+|.+...+...++.+
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~ 277 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK 277 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC
Confidence 234578899985543 334344444444 36888876 3479998988887766644
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=5.2e-08 Score=91.50 Aligned_cols=135 Identities=15% Similarity=0.180 Sum_probs=92.8
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCC-CcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCC
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCD-RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKP 83 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~-~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp 83 (250)
..|..|||+.| ..||.--.+++.--++|..||||||. +..+.-|..|++.||+|.+|+++.|-...+.....+ ...|
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~ 338 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFN 338 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH-Hhcc
Confidence 46788999999 56666333455667889999999995 477778889999999999999999944333333232 3467
Q ss_pred CCceecCCchhhhhhhc--ccccccccccccc-CCCCHHHHHHHHhcCCCceecCCCCCCCcC
Q 025644 84 KLNDVEGDSWEELVNTD--IGHGAQSLRWFVW-PNIDKDSIEMMSTECPRIIVNPKPSPFGFR 143 (250)
Q Consensus 84 ~L~~L~~~s~~dl~~~~--i~~g~~~L~~L~c-~~ITD~sL~~La~~Cp~L~~~~~cs~~~~~ 143 (250)
.|++|...-|=++.... --...++|.+|+- --++|.+++.+...||+|+++ |+.|.+-
T Consensus 339 ~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lkin--~q~~~~i 399 (419)
T KOG2120|consen 339 YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKIN--CQHFNFI 399 (419)
T ss_pred hheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccccc--ceeeeee
Confidence 88887655554444211 1134456777753 357899999999999999995 3444433
No 9
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=98.42 E-value=2.1e-07 Score=56.26 Aligned_cols=26 Identities=31% Similarity=0.666 Sum_probs=23.9
Q ss_pred CCCCCeEecCCCCCcCHHHHHHHHHh
Q 025644 30 CKSLKAVDISCCDRITAAGVSEFLLH 55 (250)
Q Consensus 30 C~~L~~LdLS~C~~ITD~gl~~La~~ 55 (250)
||+|++|||++|.+|||.||.+|+++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~~ 26 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAKG 26 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhcC
Confidence 89999999999999999999999863
No 10
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=1.5e-06 Score=77.46 Aligned_cols=81 Identities=22% Similarity=0.280 Sum_probs=67.6
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCc
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 86 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~ 86 (250)
.++.+|-++|.|+-+|+..+- +++.|+.|.+..|.++.|.+|..|+.--|+|+.|+++||+.+++.++.+|.. .++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence 467788888889999998874 6888999999999999999999999988999999999999888888877765 56776
Q ss_pred eec
Q 025644 87 DVE 89 (250)
Q Consensus 87 ~L~ 89 (250)
.|.
T Consensus 180 ~L~ 182 (221)
T KOG3864|consen 180 RLH 182 (221)
T ss_pred HHH
Confidence 653
No 11
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=3.8e-06 Score=74.86 Aligned_cols=82 Identities=27% Similarity=0.363 Sum_probs=69.2
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHH--HHHHHhhhC
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHA--ARRCLGILK 82 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~--al~~l~~~c 82 (250)
++++.|.+..| .+-|.||..|+..-|+|+.|+||+|++|||.||..|.+ .++|+.|.+.+-+.+..- ...-+..-+
T Consensus 125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~l~~v~~~e~~~~~Le~aL 203 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYDLPYVANLELVQRQLEEAL 203 (221)
T ss_pred chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHhcCchhhhchHHHHHHHHHhC
Confidence 67899999999 99999999999999999999999999999999999986 889999998887654442 223355668
Q ss_pred CCCcee
Q 025644 83 PKLNDV 88 (250)
Q Consensus 83 p~L~~L 88 (250)
|+++.+
T Consensus 204 P~c~I~ 209 (221)
T KOG3864|consen 204 PKCDIV 209 (221)
T ss_pred ccccee
Confidence 887765
No 12
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=4.2e-05 Score=78.54 Aligned_cols=123 Identities=23% Similarity=0.254 Sum_probs=86.9
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 84 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~ 84 (250)
++|++|||+|- .++..=...++.-+|.|++|.+++=.-..|+ +..+..+.|+|..||++|+..++-.|+. .+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl~GIS----~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNLSGIS----RLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCcHHHh----cccc
Confidence 68999999999 7888888899999999999999996655555 9999999999999999999888765543 2455
Q ss_pred CceecC-----Cchhhhh---------------------------hhccccccccccccccC--CCCHHHHHHHHhcCCC
Q 025644 85 LNDVEG-----DSWEELV---------------------------NTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPR 130 (250)
Q Consensus 85 L~~L~~-----~s~~dl~---------------------------~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~ 130 (250)
|++|.. .++.++. .++-+..++.|++|+|+ .++++.++.+-..=|+
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 555422 2222211 12224556666666664 5666666666655555
Q ss_pred cee
Q 025644 131 IIV 133 (250)
Q Consensus 131 L~~ 133 (250)
|+-
T Consensus 277 L~~ 279 (699)
T KOG3665|consen 277 LQQ 279 (699)
T ss_pred Hhh
Confidence 554
No 13
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.66 E-value=3.9e-05 Score=46.18 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.9
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhc
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQM 29 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~ 29 (250)
++|++|||++| +|||.||.+|+++
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~~~ 26 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALAKG 26 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHhcC
Confidence 57999999999 9999999999863
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.56 E-value=6.9e-05 Score=71.46 Aligned_cols=141 Identities=19% Similarity=0.268 Sum_probs=92.8
Q ss_pred cCCCCCeEecCCCCCcCHHHH---HHHHHhCCCCCEEecCCCCCCcHHHHH-----------HHhhhCCCCceecCC--c
Q 025644 29 MCKSLKAVDISCCDRITAAGV---SEFLLHCHSLETLRCGGSPRSNHAARR-----------CLGILKPKLNDVEGD--S 92 (250)
Q Consensus 29 ~C~~L~~LdLS~C~~ITD~gl---~~La~~C~~L~~L~l~gC~~~dd~al~-----------~l~~~cp~L~~L~~~--s 92 (250)
+||+|++||||.. -++.+|+ ..+..+|..|++|.+.+|.+.-.++.+ -.+...|+|+++... -
T Consensus 90 ~~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cCCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 4889999999986 3655554 555689999999999999665554322 122346788886221 1
Q ss_pred hhhhhhhcccc---ccccccccccC--CCCHHHHHHHH---hcCCCceecCC-CCCCCcCCccCCCCCCCCCcCCCcccc
Q 025644 93 WEELVNTDIGH---GAQSLRWFVWP--NIDKDSIEMMS---TECPRIIVNPK-PSPFGFRGFEVPREAFPDITLDDPFVN 163 (250)
Q Consensus 93 ~~dl~~~~i~~---g~~~L~~L~c~--~ITD~sL~~La---~~Cp~L~~~~~-cs~~~~~g~~~~~~~l~~~~l~~~~~~ 163 (250)
.++-....++. -++.|+.+.|+ .|-.+++++++ .+||+|++... ---||.-|......++|..+ ++.
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~----~L~ 244 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP----HLR 244 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc----hhe
Confidence 23333333332 23466777775 47777775554 59999999333 23467789999999999886 666
Q ss_pred ccCcCcccccC
Q 025644 164 DIDPSAWAVPR 174 (250)
Q Consensus 164 ~i~~~~w~~~~ 174 (250)
+|.-.+|-+..
T Consensus 245 El~l~dcll~~ 255 (382)
T KOG1909|consen 245 ELNLGDCLLEN 255 (382)
T ss_pred eeccccccccc
Confidence 77666665443
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.52 E-value=7.3e-05 Score=64.64 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=39.0
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCc
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 86 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~ 86 (250)
.++.|+|+|++|+. +..+...+.+|+.||+|+|. |+. |..+ .++++|++|++++-..++-. ..+...+|+|+
T Consensus 20 ~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~-I~~--l~~l-~~L~~L~~L~L~~N~I~~i~--~~l~~~lp~L~ 91 (175)
T PF14580_consen 20 KLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQ-ITK--LEGL-PGLPRLKTLDLSNNRISSIS--EGLDKNLPNLQ 91 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS---S-C--HHHHHH-TT--
T ss_pred cccccccccccccc--ccchhhhhcCCCEEECCCCC-Ccc--ccCc-cChhhhhhcccCCCCCCccc--cchHHhCCcCC
Confidence 57889999987776 45666677889999999985 543 2222 24788999999887665532 13445688999
Q ss_pred eecCCc--hhhhhhhccccccccccccccC--CCC--HHHHHHHHhcCCCcee
Q 025644 87 DVEGDS--WEELVNTDIGHGAQSLRWFVWP--NID--KDSIEMMSTECPRIIV 133 (250)
Q Consensus 87 ~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~IT--D~sL~~La~~Cp~L~~ 133 (250)
.|.... +.++..+..=..+++|+.|... -|+ ..=...+...||+|++
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~ 144 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV 144 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence 874322 3333222222356666666421 011 2234556667888877
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.32 E-value=5.9e-05 Score=65.21 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=43.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.||||+|+|++- ..+ .+++.|+.|++++- .|++-+ ..+..+||+|++|.+++....+-..+..+. .||+|
T Consensus 42 ~~L~~L~Ls~N~I~~l--~~l-~~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~-~l~~L 115 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL--EGL-PGLPRLKTLDLSNN-RISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLS-SLPKL 115 (175)
T ss_dssp TT--EEE-TTS--S----TT-----TT--EEE--SS----S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGG-G-TT-
T ss_pred cCCCEEECCCCCCccc--cCc-cChhhhhhcccCCC-CCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHH-cCCCc
Confidence 5788889988866542 222 24788888888885 477643 234467888888888877554433334443 47888
Q ss_pred ceecCCc--hhhhh--hhccccccccccccccCCCCHH
Q 025644 86 NDVEGDS--WEELV--NTDIGHGAQSLRWFVWPNIDKD 119 (250)
Q Consensus 86 ~~L~~~s--~~dl~--~~~i~~g~~~L~~L~c~~ITD~ 119 (250)
++|+..+ +++.. -.-+-..+++|++|+-..||++
T Consensus 116 ~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 116 RVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp -EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred ceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHH
Confidence 8875433 22221 0112245677777776556554
No 17
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=97.11 E-value=0.00037 Score=40.92 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=15.5
Q ss_pred CCCCCeEecCCCCCcCHHHHHHHHH
Q 025644 30 CKSLKAVDISCCDRITAAGVSEFLL 54 (250)
Q Consensus 30 C~~L~~LdLS~C~~ITD~gl~~La~ 54 (250)
|++|++|||++|. |||+|+.+|++
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhCC
Confidence 5677777777775 77777777763
No 18
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.78 E-value=0.0012 Score=44.49 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=18.1
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcC
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRIT 45 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~IT 45 (250)
+|++|+|++++|+|- ...-..|++|+.||+++| +|+
T Consensus 2 ~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N-~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL--PPELSNLPNLETLNLSNN-PIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSS-CCS
T ss_pred cceEEEccCCCCccc--CchHhCCCCCCEEEecCC-CCC
Confidence 456666666655552 222235666666666665 344
No 19
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.66 E-value=0.0013 Score=38.61 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHh
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQ 28 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~ 28 (250)
++|+.|||++|+|||.|+.+|++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~~ 24 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALAN 24 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhCC
Confidence 58999999999999999999985
No 20
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.39 E-value=0.0032 Score=42.49 Aligned_cols=39 Identities=33% Similarity=0.395 Sum_probs=30.6
Q ss_pred CCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcH
Q 025644 31 KSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNH 72 (250)
Q Consensus 31 ~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd 72 (250)
++|++|+|+++ +|++ |.....+|++|++|++++++.++-
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCCCCCC
Confidence 58999999998 6886 555457899999999999987653
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.37 E-value=0.0039 Score=59.73 Aligned_cols=119 Identities=18% Similarity=0.208 Sum_probs=67.6
Q ss_pred CCcCEEEccCCCCCHHHHHHHH---hcCCCCCeEecCCCCCcCHHHHHHHHHhC---CCCCEEecCCCCCCcH---HHHH
Q 025644 6 SSWEILDISGSDVSDFGLVKVA---QMCKSLKAVDISCCDRITAAGVSEFLLHC---HSLETLRCGGSPRSNH---AARR 76 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la---~~C~~L~~LdLS~C~~ITD~gl~~La~~C---~~L~~L~l~gC~~~dd---~al~ 76 (250)
+.|+.+.++.+.|--.|+.+++ .+||+|+.|||.... .|-.|-.+|++-. |+|+.|+++.|-..+. +...
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 4567777777766666665444 357777777777754 6677777777543 4566677777755444 3344
Q ss_pred HHhhhCCCCceecCCchhhhh----hhc--cccccccccccccC--CC--CHHHHHHHHh
Q 025644 77 CLGILKPKLNDVEGDSWEELV----NTD--IGHGAQSLRWFVWP--NI--DKDSIEMMST 126 (250)
Q Consensus 77 ~l~~~cp~L~~L~~~s~~dl~----~~~--i~~g~~~L~~L~c~--~I--TD~sL~~La~ 126 (250)
++...-|+|++|.....+... +.. ++. -+.|..|+.. .+ .|+++.-++.
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l~e~de~i~ei~~ 322 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRLGEKDEGIDEIAS 322 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccccccchhHHHHHH
Confidence 455556777776543322111 111 222 4455555432 23 5666666654
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.29 E-value=0.00021 Score=50.16 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=41.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 68 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~ 68 (250)
++|+.|+|++|+|+.-.-. .-.++++|++|||+++ +|+.-.- ..-.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~-~f~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD-SFSNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTT-TTTTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHH-HHcCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCCc
Confidence 4789999999965543222 3347899999999976 4542211 234678999999998875
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.19 E-value=0.0038 Score=67.20 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=38.1
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~ 69 (250)
++|+.|+|++| .++.-. .-..++++|+.|+|++|.+++.- -.- -++++|+.|+++||..
T Consensus 778 ~sL~~L~Ls~n~~l~~lP--~si~~L~~L~~L~Ls~C~~L~~L--P~~-~~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELP--SSIQNLHKLEHLEIENCINLETL--PTG-INLESLESLDLSGCSR 837 (1153)
T ss_pred ccchheeCCCCCCccccC--hhhhCCCCCCEEECCCCCCcCee--CCC-CCccccCEEECCCCCc
Confidence 46888888887 433211 11346888888888888776531 111 1578888888888854
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.15 E-value=0.0052 Score=66.18 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=44.1
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|.|+.- -.-...+++|++|||++|.+++.-. . ...+++|++|++++|.....- -..+ .++++|
T Consensus 611 ~~L~~L~L~~s~l~~L--~~~~~~l~~Lk~L~Ls~~~~l~~ip--~-ls~l~~Le~L~L~~c~~L~~l-p~si-~~L~~L 683 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKL--WDGVHSLTGLRNIDLRGSKNLKEIP--D-LSMATNLETLKLSDCSSLVEL-PSSI-QYLNKL 683 (1153)
T ss_pred cCCcEEECcCcccccc--ccccccCCCCCEEECCCCCCcCcCC--c-cccCCcccEEEecCCCCcccc-chhh-hccCCC
Confidence 5677777777744321 0012457777788887776543322 1 234677777777777432210 0011 245666
Q ss_pred ceecCCchhhh
Q 025644 86 NDVEGDSWEEL 96 (250)
Q Consensus 86 ~~L~~~s~~dl 96 (250)
+.|+...|..+
T Consensus 684 ~~L~L~~c~~L 694 (1153)
T PLN03210 684 EDLDMSRCENL 694 (1153)
T ss_pred CEEeCCCCCCc
Confidence 66655444333
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0087 Score=58.94 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=35.1
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCC
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 67 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC 67 (250)
.|+.+.|..|.|.+.|....++.||+++.||||+----.=..|..|++..|+|+.|+++.-
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc
Confidence 3455555555666666655566666666666665543444556666666666666665543
No 26
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.74 E-value=0.013 Score=35.86 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=14.3
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhc
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQM 29 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~ 29 (250)
.+|++|||++|.|+|.|..+|++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 355666666666666666666553
No 27
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=95.72 E-value=0.01 Score=61.70 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=19.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC 41 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C 41 (250)
++|+.|+|++|+++..--..+..++++|++|||++|
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n 128 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC
Confidence 456666776665543222233345566666666655
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.011 Score=58.38 Aligned_cols=41 Identities=20% Similarity=0.116 Sum_probs=22.5
Q ss_pred CCCchHHHHHHHhhhhhhhccchHHHhhH----HHHHHHHHHHHHhc
Q 025644 187 PNELSMAEKFRLAFVERDTRLAPKRAKNA----RQHQRRAEREWMET 229 (250)
Q Consensus 187 ~~~l~~ae~fr~a~~~~~~r~~~kr~~n~----~~~~rr~~r~~~~~ 229 (250)
..+++.-+. -||...=||...-..=|. -+.+|+||=.|+..
T Consensus 335 ~n~ln~e~~--~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~~~ 379 (505)
T KOG3207|consen 335 LNYLNKETD--TAKLLVIARISQLVKLNDVDISPNERRDAELYYLSK 379 (505)
T ss_pred ccccccccc--ceeEEeeeehhhhhhhcccccChHHhhhhhhhHHhh
Confidence 345555555 566666666555444442 34667777666543
No 29
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=94.69 E-value=0.034 Score=57.93 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=45.6
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS 70 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~ 70 (250)
..++.|||++++|+...-.. -.++++|++|||++|. ++..--..+..++++|++|+++++..+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~-~~~l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~ 131 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFT 131 (968)
T ss_pred CcEEEEEecCCCccccCChH-HhCCCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccc
Confidence 46889999998776644333 3479999999999984 554333345567888888888888554
No 30
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=94.58 E-value=0.053 Score=33.17 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.9
Q ss_pred CCCCeEecCCCCCcCHHHHHHHHHhC
Q 025644 31 KSLKAVDISCCDRITAAGVSEFLLHC 56 (250)
Q Consensus 31 ~~L~~LdLS~C~~ITD~gl~~La~~C 56 (250)
+.|++|||+++. |+|+|+.+|++..
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHHHh
Confidence 579999999984 9999999998754
No 31
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.53 E-value=0.017 Score=53.16 Aligned_cols=79 Identities=22% Similarity=0.250 Sum_probs=46.4
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHH--HHhCCCCCEEecCCCCC--CcHHHHHHHhh
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEF--LLHCHSLETLRCGGSPR--SNHAARRCLGI 80 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~L--a~~C~~L~~L~l~gC~~--~dd~al~~l~~ 80 (250)
++|+.|.+|-+ .--..||..++..||+|++|++|+. +|.| |.+| .+...+|.+|+++.|+. .++ -+.-+..
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~d-yre~vf~ 140 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD--LSTLRPLKELENLKSLDLFNCSVTNLDD-YREKVFL 140 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc--ccccchhhhhcchhhhhcccCCcccccc-HHHHHHH
Confidence 46667777666 3444566677777777777777774 4554 2222 23456677777777732 222 2445555
Q ss_pred hCCCCcee
Q 025644 81 LKPKLNDV 88 (250)
Q Consensus 81 ~cp~L~~L 88 (250)
.+|+|+.|
T Consensus 141 ll~~L~~L 148 (260)
T KOG2739|consen 141 LLPSLKYL 148 (260)
T ss_pred Hhhhhccc
Confidence 66666665
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.96 E-value=0.14 Score=53.01 Aligned_cols=84 Identities=20% Similarity=0.339 Sum_probs=50.0
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCH-HHHHHHH---------------------HhCCCCCEEe
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITA-AGVSEFL---------------------LHCHSLETLR 63 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD-~gl~~La---------------------~~C~~L~~L~ 63 (250)
++|+.|.++|-.+.+.-..++..+.|+|.+||||++. |++ .|+..|- -+..+|++||
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD 226 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence 6788888888744333377788888888888888873 443 2333221 1456777777
Q ss_pred cCCCCCCcHH--HHHHHh--hhCCCCceecC
Q 025644 64 CGGSPRSNHA--ARRCLG--ILKPKLNDVEG 90 (250)
Q Consensus 64 l~gC~~~dd~--al~~l~--~~cp~L~~L~~ 90 (250)
+|.=...++. ..+.+. ..+|+|+.|+.
T Consensus 227 IS~~~~~~~~~ii~qYlec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 227 ISRDKNNDDTKIIEQYLECGMVLPELRFLDC 257 (699)
T ss_pred ccccccccchHHHHHHHHhcccCccccEEec
Confidence 7755443332 222222 34677777643
No 33
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.38 E-value=0.57 Score=44.48 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=88.2
Q ss_pred CCCCcCEEEccCCCCCHHHHHHHHhc-------------------------------------CCCCCeEecCCCC--Cc
Q 025644 4 ADSSWEILDISGSDVSDFGLVKVAQM-------------------------------------CKSLKAVDISCCD--RI 44 (250)
Q Consensus 4 ad~~L~~LnLsgC~ITD~gL~~la~~-------------------------------------C~~L~~LdLS~C~--~I 44 (250)
++..++.++|||+-|...+...++.. ||+|+.+|||..- .-
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 45677777888877776666666543 5666666666542 11
Q ss_pred CHHHHHHHHHhCCCCCEEecCCCCCC---cH---HHHHHHh-----hhCCCCceecCCc--hhhhhhhcccccc---ccc
Q 025644 45 TAAGVSEFLLHCHSLETLRCGGSPRS---NH---AARRCLG-----ILKPKLNDVEGDS--WEELVNTDIGHGA---QSL 108 (250)
Q Consensus 45 TD~gl~~La~~C~~L~~L~l~gC~~~---dd---~al~~l~-----~~cp~L~~L~~~s--~~dl~~~~i~~g~---~~L 108 (250)
+..-+..+..+-..|++|.+++|..- .. .++.+++ ..-|+|+++.... .+.-.....+.+. +.|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 22233333344556666666666221 11 1122233 2356666641100 0000000011111 234
Q ss_pred ccccc--CCCCHHHHHHHH----hcCCCceecCC-CCCCCcCCccCCCCCCCCCcCCCccccccCcCcccccCCc
Q 025644 109 RWFVW--PNIDKDSIEMMS----TECPRIIVNPK-PSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFA 176 (250)
Q Consensus 109 ~~L~c--~~ITD~sL~~La----~~Cp~L~~~~~-cs~~~~~g~~~~~~~l~~~~l~~~~~~~i~~~~w~~~~~~ 176 (250)
+.+-. ..|-++++.+++ ..|+.|++... ---||..|.+...-++|.-++ +.++.--+|-.+..+
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~----lrEL~lnDClls~~G 258 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL----LRELRLNDCLLSNEG 258 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch----hhhccccchhhcccc
Confidence 44332 368888888776 47999999332 234677888888888877655 455555555544433
No 34
>PLN03150 hypothetical protein; Provisional
Probab=91.19 E-value=0.24 Score=50.34 Aligned_cols=78 Identities=15% Similarity=0.110 Sum_probs=48.5
Q ss_pred cCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCce
Q 025644 8 WEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLND 87 (250)
Q Consensus 8 L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~~ 87 (250)
++.|+|++++++-.--..+ ..+++|+.|||+++. ++. .+-.-..++++|++|+++++..+... -..+ ..+++|+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~-l~g-~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l-~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNS-IRG-NIPPSLGSITSLEVLDLSYNSFNGSI-PESL-GQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCc-ccC-cCChHHhCCCCCCEEECCCCCCCCCC-chHH-hcCCCCCE
Confidence 6788998885442211223 358899999999984 432 12222467899999999998654321 0112 35788888
Q ss_pred ecC
Q 025644 88 VEG 90 (250)
Q Consensus 88 L~~ 90 (250)
|+.
T Consensus 495 L~L 497 (623)
T PLN03150 495 LNL 497 (623)
T ss_pred EEC
Confidence 754
No 35
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.96 E-value=0.078 Score=48.91 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=40.9
Q ss_pred HHHHHHHh--cCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCc
Q 025644 21 FGLVKVAQ--MCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSN 71 (250)
Q Consensus 21 ~gL~~la~--~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~d 71 (250)
.|+..+++ -.|+|++|++|.-+.--..|+..++..||+|++|+++|-.+-+
T Consensus 53 ~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 53 VGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 33334443 3789999999998778889999999999999999999885433
No 36
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=89.86 E-value=0.099 Score=53.72 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=8.9
Q ss_pred cCCCCCeEecCCC
Q 025644 29 MCKSLKAVDISCC 41 (250)
Q Consensus 29 ~C~~L~~LdLS~C 41 (250)
.|++|+.||||+-
T Consensus 315 ftqkL~~LdLs~N 327 (873)
T KOG4194|consen 315 FTQKLKELDLSSN 327 (873)
T ss_pred hcccceeEecccc
Confidence 3777777777764
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.71 E-value=0.24 Score=47.50 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=57.3
Q ss_pred cCEEEccCCCCCHHHHH-HHHhcCCCCCeEecCCCCCcCH-HHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 8 WEILDISGSDVSDFGLV-KVAQMCKSLKAVDISCCDRITA-AGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 8 L~~LnLsgC~ITD~gL~-~la~~C~~L~~LdLS~C~~ITD-~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
++.|.+-||.|...|-. .++..|..++.|||.+. +|+| .-|.+|.++.|.|++|+++.-+...+. ..+..-..+|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~nl 123 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDI--KSLPLPLKNL 123 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCcc--ccCcccccce
Confidence 45677778877777655 68889999999999995 6887 558889999999999999755665552 2222233466
Q ss_pred cee
Q 025644 86 NDV 88 (250)
Q Consensus 86 ~~L 88 (250)
++|
T Consensus 124 ~~l 126 (418)
T KOG2982|consen 124 RVL 126 (418)
T ss_pred EEE
Confidence 665
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=89.54 E-value=0.07 Score=37.18 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=28.2
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCD 42 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~ 42 (250)
++|++|+|++|.|+...-. .-.++++|++|++++|.
T Consensus 25 ~~L~~L~l~~N~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 25 PNLETLDLSNNNLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSSESEEETT-TTTTSTTESEEEETSSS
T ss_pred CCCCEeEccCCccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 7899999999966533222 34689999999999984
No 39
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.17 E-value=0.18 Score=50.11 Aligned_cols=63 Identities=19% Similarity=0.314 Sum_probs=29.6
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCC----CCeEecCCCCCcCHHHHHHHHHh---CCCCCEEecCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKS----LKAVDISCCDRITAAGVSEFLLH---CHSLETLRCGGSPR 69 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~----L~~LdLS~C~~ITD~gl~~La~~---C~~L~~L~l~gC~~ 69 (250)
.+|+.||++++.++|.|+..+..+.+. |++|++.+|. +|+.|-..++.. +..|+.|++.-|..
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHHHHhcccchhHHHHHhccc
Confidence 344555555555555555555544322 3445555553 555554444432 33344444444443
No 40
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.25 E-value=0.19 Score=47.74 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=47.5
Q ss_pred CCCEEecCCCCCCcHHHHHHHhhhCCCCceecCCchhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee--
Q 025644 58 SLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV-- 133 (250)
Q Consensus 58 ~L~~L~l~gC~~~dd~al~~l~~~cp~L~~L~~~s~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~-- 133 (250)
+.+.||+.||.+.|-+ |-..+|.|++|. .|.-.+.+.+.-..|+.|+.|+.. .|.|--=....++-|+|++
T Consensus 20 ~vkKLNcwg~~L~DIs----ic~kMp~lEVLs-LSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS----ICEKMPLLEVLS-LSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHHH----HHHhcccceeEE-eeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3444555555554442 334455555541 122222222223456666666542 2444333334457777777
Q ss_pred ---cCCCCCCCcCCccCCC---CCCCCC-cCCCccccccC
Q 025644 134 ---NPKPSPFGFRGFEVPR---EAFPDI-TLDDPFVNDID 166 (250)
Q Consensus 134 ---~~~cs~~~~~g~~~~~---~~l~~~-~l~~~~~~~i~ 166 (250)
||=| +..|..--+ -.|||+ +||.--|++=+
T Consensus 95 L~ENPCc---~~ag~nYR~~VLR~LPnLkKLDnv~VteeE 131 (388)
T KOG2123|consen 95 LDENPCC---GEAGQNYRRKVLRVLPNLKKLDNVPVTEEE 131 (388)
T ss_pred hccCCcc---cccchhHHHHHHHHcccchhccCccccHHH
Confidence 4422 333332222 257777 67766555443
No 41
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.38 E-value=0.31 Score=48.38 Aligned_cols=66 Identities=21% Similarity=0.306 Sum_probs=31.3
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcC---CC-CCeEecCCCCCcCHHHHHHHHHhCCCC----CEEecCCCCCCcH
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMC---KS-LKAVDISCCDRITAAGVSEFLLHCHSL----ETLRCGGSPRSNH 72 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C---~~-L~~LdLS~C~~ITD~gl~~La~~C~~L----~~L~l~gC~~~dd 72 (250)
.++++|+|++|.||+.+...++.-. +. +..|+++++ ++.|.|++.+....+.+ ++|+++.|+.++.
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~ 277 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEK 277 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcCCcccc
Confidence 3455555555555555555444322 11 333454443 35555555555444333 4555555544444
No 42
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.88 E-value=0.93 Score=43.19 Aligned_cols=84 Identities=23% Similarity=0.343 Sum_probs=52.3
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCC-----------CCC----------cCHHHHHHHHHhCCCCCEEec
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISC-----------CDR----------ITAAGVSEFLLHCHSLETLRC 64 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~-----------C~~----------ITD~gl~~La~~C~~L~~L~l 64 (250)
.+.+.||+-||+++|.+ |.+.+|.|+.|.||- |.+ |.|-.=..-.++.|+|++|-|
T Consensus 19 ~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 45678999999999965 567889999998884 322 222222222356777777766
Q ss_pred CCCCC---CcHHHHHHHhhhCCCCceecCCc
Q 025644 65 GGSPR---SNHAARRCLGILKPKLNDVEGDS 92 (250)
Q Consensus 65 ~gC~~---~dd~al~~l~~~cp~L~~L~~~s 92 (250)
...|- ....-+..+-..+|+|++|.+..
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 54332 22233444556688888885433
No 43
>PLN03150 hypothetical protein; Provisional
Probab=84.11 E-value=1.5 Score=44.67 Aligned_cols=36 Identities=6% Similarity=0.166 Sum_probs=17.6
Q ss_pred CCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644 32 SLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 32 ~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~ 69 (250)
.+..|+|+++. ++.. +-.-..++++|+.|+++++..
T Consensus 419 ~v~~L~L~~n~-L~g~-ip~~i~~L~~L~~L~Ls~N~l 454 (623)
T PLN03150 419 FIDGLGLDNQG-LRGF-IPNDISKLRHLQSINLSGNSI 454 (623)
T ss_pred EEEEEECCCCC-cccc-CCHHHhCCCCCCEEECCCCcc
Confidence 35666666653 2211 111123466666666666643
No 44
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=81.37 E-value=0.89 Score=24.77 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=4.5
Q ss_pred CCCeEecCCCC
Q 025644 32 SLKAVDISCCD 42 (250)
Q Consensus 32 ~L~~LdLS~C~ 42 (250)
+|+.|+|++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 44555555553
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=81.05 E-value=2.5 Score=40.31 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=61.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHH----hcCCCCCeEecCCCCCcCHHHHHHHHHhC---CCCCEEecCCCCCCcHHHH---
Q 025644 6 SSWEILDISGSDVSDFGLVKVA----QMCKSLKAVDISCCDRITAAGVSEFLLHC---HSLETLRCGGSPRSNHAAR--- 75 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la----~~C~~L~~LdLS~C~~ITD~gl~~La~~C---~~L~~L~l~gC~~~dd~al--- 75 (250)
.+|+.+-+..++|-..|+..++ .+|.+|+.|||.... .|-.|-.+|+... +.|+.|+++.|-.++..+-
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~ 263 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL 263 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence 5788888888889999988876 469999999999864 8888888888643 5688899999965554322
Q ss_pred -HHHhhhCCCCcee
Q 025644 76 -RCLGILKPKLNDV 88 (250)
Q Consensus 76 -~~l~~~cp~L~~L 88 (250)
..-...-|+|+.|
T Consensus 264 ~~f~e~~~p~l~~L 277 (388)
T COG5238 264 RRFNEKFVPNLMPL 277 (388)
T ss_pred HHhhhhcCCCcccc
Confidence 2223456888776
No 46
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=80.93 E-value=0.67 Score=26.56 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=7.5
Q ss_pred CCCeEecCCCCCcC
Q 025644 32 SLKAVDISCCDRIT 45 (250)
Q Consensus 32 ~L~~LdLS~C~~IT 45 (250)
+|++||||+| ++|
T Consensus 1 ~L~~Ldls~n-~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT 13 (22)
T ss_dssp TESEEEETSS-EES
T ss_pred CccEEECCCC-cCE
Confidence 3566666666 444
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=80.57 E-value=0.61 Score=49.26 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=26.0
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC 41 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C 41 (250)
+.|+.|||+.+++|+.. .-++|++|++||||+.
T Consensus 187 ~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYN 219 (1096)
T ss_pred HHhhhhccchhhhhhhH---HHHhcccccccccccc
Confidence 34678899998888765 5567888999999875
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=79.58 E-value=1.6 Score=43.12 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=6.4
Q ss_pred CCCeEecCCCCC
Q 025644 32 SLKAVDISCCDR 43 (250)
Q Consensus 32 ~L~~LdLS~C~~ 43 (250)
+|++|+|++|.+
T Consensus 73 sLtsL~Lsnc~n 84 (426)
T PRK15386 73 ELTEITIENCNN 84 (426)
T ss_pred CCcEEEccCCCC
Confidence 355555555554
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=79.51 E-value=1.1 Score=43.28 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=49.0
Q ss_pred CCcCEEEccCCCCC--HHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCC
Q 025644 6 SSWEILDISGSDVS--DFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKP 83 (250)
Q Consensus 6 ~~L~~LnLsgC~IT--D~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp 83 (250)
+.|+.||||++.|| |++++- .|.++.||+|+.. |+.-+= ..+.++|..|++++...+.-.+ ....+-
T Consensus 284 q~LtelDLS~N~I~~iDESvKL----~Pkir~L~lS~N~-i~~v~n---La~L~~L~~LDLS~N~Ls~~~G---wh~KLG 352 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKL----APKLRRLILSQNR-IRTVQN---LAELPQLQLLDLSGNLLAECVG---WHLKLG 352 (490)
T ss_pred hhhhhccccccchhhhhhhhhh----ccceeEEeccccc-eeeehh---hhhcccceEeecccchhHhhhh---hHhhhc
Confidence 67889999998444 566653 5889999999974 544332 3468999999999875544332 233344
Q ss_pred CCceec
Q 025644 84 KLNDVE 89 (250)
Q Consensus 84 ~L~~L~ 89 (250)
+.+.|+
T Consensus 353 NIKtL~ 358 (490)
T KOG1259|consen 353 NIKTLK 358 (490)
T ss_pred CEeeee
Confidence 555553
No 50
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=78.83 E-value=0.65 Score=47.99 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=41.9
Q ss_pred CCcCEEEccCCC---CCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCC--CCCcHHHHHHHh
Q 025644 6 SSWEILDISGSD---VSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS--PRSNHAARRCLG 79 (250)
Q Consensus 6 ~~L~~LnLsgC~---ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC--~~~dd~al~~l~ 79 (250)
.++++|||+-++ |+.-++. |...|+.||||+-. |.---+.. -.+|++|+.|+++.- ...+...+.++.
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lf----gLt~L~~L~lS~Na-I~rih~d~-WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLF----GLTSLEQLDLSYNA-IQRIHIDS-WSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred cccceeecccchhhhhhccccc----ccchhhhhccchhh-hheeecch-hhhcccceeEeccccccccCChhHHHHHH
Confidence 567788888773 3333332 57788888888752 32222221 258999999999877 345555554443
No 51
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=78.55 E-value=1.1 Score=47.42 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=7.1
Q ss_pred CCcCEEEccCCCCC
Q 025644 6 SSWEILDISGSDVS 19 (250)
Q Consensus 6 ~~L~~LnLsgC~IT 19 (250)
++|++|+|++|+||
T Consensus 242 ~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 242 PELRTLEVSGNQLT 255 (788)
T ss_pred CCCcEEEecCCccC
Confidence 34555555555443
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=75.19 E-value=3.3 Score=40.02 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=43.6
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHH
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHA 73 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~ 73 (250)
+.++.||+|.+.|+..+= + ...++|++||||+..--. +.-.-...-++++|++++...-+-+
T Consensus 307 Pkir~L~lS~N~i~~v~n--L-a~L~~L~~LDLS~N~Ls~---~~Gwh~KLGNIKtL~La~N~iE~LS 368 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTVQN--L-AELPQLQLLDLSGNLLAE---CVGWHLKLGNIKTLKLAQNKIETLS 368 (490)
T ss_pred cceeEEeccccceeeehh--h-hhcccceEeecccchhHh---hhhhHhhhcCEeeeehhhhhHhhhh
Confidence 568999999996665443 2 358999999999974333 3333446778999999976544443
No 53
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=74.65 E-value=1.4 Score=47.29 Aligned_cols=37 Identities=27% Similarity=0.474 Sum_probs=29.4
Q ss_pred CCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644 30 CKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 68 (250)
Q Consensus 30 C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~ 68 (250)
.+.|+.+|||. .+++.-.+.+...+ |+|++||++|-.
T Consensus 451 l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCc
Confidence 47888888885 56888887777766 889999998885
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=71.98 E-value=5.1 Score=39.58 Aligned_cols=36 Identities=11% Similarity=0.316 Sum_probs=23.8
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcC
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRIT 45 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~IT 45 (250)
++|+.|++++| .++-.- .. -.++|++|+|++|.+++
T Consensus 72 ~sLtsL~Lsnc~nLtsLP-~~---LP~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 72 NELTEITIENCNNLTTLP-GS---IPEGLEKLTVCHCPEIS 108 (426)
T ss_pred CCCcEEEccCCCCcccCC-ch---hhhhhhheEccCccccc
Confidence 57999999998 642210 01 13578888888886654
No 55
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=70.46 E-value=4.8 Score=42.63 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=24.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRIT 45 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~IT 45 (250)
.+|+.|+|++++||. |....++|++|+|+++ ++|
T Consensus 222 ~~L~~L~L~~N~Lt~-----LP~lp~~Lk~LdLs~N-~Lt 255 (788)
T PRK15387 222 AHITTLVIPDNNLTS-----LPALPPELRTLEVSGN-QLT 255 (788)
T ss_pred cCCCEEEccCCcCCC-----CCCCCCCCcEEEecCC-ccC
Confidence 367788888776663 3345788999999887 455
No 56
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=68.38 E-value=3.2 Score=44.40 Aligned_cols=128 Identities=18% Similarity=0.142 Sum_probs=70.0
Q ss_pred CCcCEEEccCCCCCHHHHHHH-----HhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhh
Q 025644 6 SSWEILDISGSDVSDFGLVKV-----AQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGI 80 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~l-----a~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~ 80 (250)
.+|+.|.+.+|.+++.-+... ..++++|..+.+..|+...|-.-. ..-|+|++|.+.+|....+-. ....
T Consensus 717 ~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~~~~e~~i--~~~k 791 (889)
T KOG4658|consen 717 GNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL---LFAPHLTSLSLVSCRLLEDII--PKLK 791 (889)
T ss_pred cCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh---hccCcccEEEEecccccccCC--CHHH
Confidence 678888888886665433211 113556777777777654443322 456899999999997655521 1111
Q ss_pred hCCCCce--ecCCchhhhhhhccccccccccccccCCCCHHHHHH-HHhcCCCceecCCCCCCC
Q 025644 81 LKPKLND--VEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEM-MSTECPRIIVNPKPSPFG 141 (250)
Q Consensus 81 ~cp~L~~--L~~~s~~dl~~~~i~~g~~~L~~L~c~~ITD~sL~~-La~~Cp~L~~~~~cs~~~ 141 (250)
.+.++.. +-..+.+.+.++.-..|++++.++..+..- ++. ....||+++..|.=+..+
T Consensus 792 ~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~---l~~~~ve~~p~l~~~P~~~~~~ 852 (889)
T KOG4658|consen 792 ALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLK---LEELIVEECPKLGKLPLLSTLT 852 (889)
T ss_pred HhhhcccEEecccccccceeeecCCCCceeEecccCccc---hhheehhcCcccccCccccccc
Confidence 2222222 112222223223334677777776654433 333 345699999877544443
No 57
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=67.04 E-value=1.9 Score=41.24 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=35.2
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHH
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHA 73 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~ 73 (250)
.+|+.|++.+++|+-. ..+...|++|++||||+-.=.+-.|+..+.. |+.|++.|++..+-.
T Consensus 95 ~~l~~l~l~~n~i~~i--~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~----L~~L~l~~N~i~~~~ 156 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKI--ENLLSSLVNLQVLDLSFNKITKLEGLSTLTL----LKELNLSGNLISDIS 156 (414)
T ss_pred cceeeeeccccchhhc--ccchhhhhcchheeccccccccccchhhccc----hhhheeccCcchhcc
Confidence 4566666666522211 1114467888888888864333345554443 777777777655543
No 58
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.11 E-value=9.9 Score=38.90 Aligned_cols=83 Identities=22% Similarity=0.246 Sum_probs=56.8
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCC--cCHHHHHHHHHhCCCCCEEecCCCCCCcH-----HHHHH
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDR--ITAAGVSEFLLHCHSLETLRCGGSPRSNH-----AARRC 77 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~--ITD~gl~~La~~C~~L~~L~l~gC~~~dd-----~al~~ 77 (250)
+.+..|+|+.+ --.=+++..|++.-|+|..||||+-.. -++.-+..+ .-..|+.|-+.|-|..+. +-+++
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhhhHHHHHH
Confidence 45667778887 344456677999999999999998722 222222222 356678888888877554 45667
Q ss_pred HhhhCCCCceecC
Q 025644 78 LGILKPKLNDVEG 90 (250)
Q Consensus 78 l~~~cp~L~~L~~ 90 (250)
|-..-|+|..|..
T Consensus 296 i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 296 IRELFPKLLRLDG 308 (585)
T ss_pred HHHhcchheeecC
Confidence 7788899998844
No 59
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=63.50 E-value=7.1 Score=41.05 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=17.5
Q ss_pred CCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644 32 SLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 32 ~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~ 69 (250)
+|+.|+|+++ +++. +-. .-+++|++|++++|..
T Consensus 263 ~L~~L~Ls~N-~L~~--LP~--~l~~sL~~L~Ls~N~L 295 (754)
T PRK15370 263 ALQSLDLFHN-KISC--LPE--NLPEELRYLSVYDNSI 295 (754)
T ss_pred CCCEEECcCC-ccCc--ccc--ccCCCCcEEECCCCcc
Confidence 5666666643 3441 111 1235677777777743
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.44 E-value=6.7 Score=37.90 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=49.1
Q ss_pred CCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCceecC
Q 025644 32 SLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEG 90 (250)
Q Consensus 32 ~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~~L~~ 90 (250)
-|+-|-+.+|.--|..-+..++..|..++.|+++|-.++|=+.+.+|-.++|.|+.||.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNl 104 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNL 104 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeec
Confidence 34566677776445555778899999999999999999999999999999999999854
No 61
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=55.10 E-value=9.8 Score=22.89 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=14.4
Q ss_pred CcCEEEccCCCCCHH-HHHHHHhcCC
Q 025644 7 SWEILDISGSDVSDF-GLVKVAQMCK 31 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~-gL~~la~~C~ 31 (250)
+|++|.|....++|+ ++..+-.+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 456666666633333 5666666665
No 62
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=54.85 E-value=12 Score=39.30 Aligned_cols=12 Identities=17% Similarity=0.238 Sum_probs=6.3
Q ss_pred CCCCEEecCCCC
Q 025644 57 HSLETLRCGGSP 68 (250)
Q Consensus 57 ~~L~~L~l~gC~ 68 (250)
++|+.|++++|.
T Consensus 346 ~sL~~L~Ls~N~ 357 (754)
T PRK15370 346 PELQVLDVSKNQ 357 (754)
T ss_pred CcccEEECCCCC
Confidence 455555555553
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=51.73 E-value=7.6 Score=35.35 Aligned_cols=104 Identities=19% Similarity=0.111 Sum_probs=65.4
Q ss_pred CCCHHHHHHHH--hcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCceecCCc--
Q 025644 17 DVSDFGLVKVA--QMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDS-- 92 (250)
Q Consensus 17 ~ITD~gL~~la--~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~~L~~~s-- 92 (250)
++||.-+..+- .+.++|..|.|+.. .||+-+ .-|....|+|.+|.+.+-++..-+-+.-++ .||+|+.|...+
T Consensus 48 DLtdNdl~~l~~lp~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 48 DLTDNDLRKLDNLPHLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNP 124 (233)
T ss_pred cccccchhhcccCCCccccceEEecCC-cceeec-cchhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCc
Confidence 45555555543 47899999999985 577643 235567789999999887543332233333 488999874322
Q ss_pred hhhhh--hhccccccccccccccCCCCHHHHHH
Q 025644 93 WEELV--NTDIGHGAQSLRWFVWPNIDKDSIEM 123 (250)
Q Consensus 93 ~~dl~--~~~i~~g~~~L~~L~c~~ITD~sL~~ 123 (250)
.++.. -.-.-...++|+.|+..+||-+=.+.
T Consensus 125 v~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~ 157 (233)
T KOG1644|consen 125 VEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREE 157 (233)
T ss_pred hhcccCceeEEEEecCcceEeehhhhhHHHHHH
Confidence 22221 01123567788999988888765544
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=48.32 E-value=13 Score=34.57 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=33.9
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~ 69 (250)
+|+.|++++++|.+.- .-...+++|+.|+++.+. |++-.-.. ...+.|+.|.+++...
T Consensus 141 nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~-l~~l~~~~--~~~~~L~~L~ls~N~i 198 (394)
T COG4886 141 NLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFND-LSDLPKLL--SNLSNLNNLDLSGNKI 198 (394)
T ss_pred hcccccccccchhhhh--hhhhccccccccccCCch-hhhhhhhh--hhhhhhhheeccCCcc
Confidence 5666666666554431 112357778888877773 55433222 1567777777777743
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=48.20 E-value=4.2 Score=38.82 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=44.1
Q ss_pred CCcCEEEccCCCCCH-HHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644 6 SSWEILDISGSDVSD-FGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 84 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD-~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~ 84 (250)
.+|++|||+++.|++ .|+..+ +.|+.|+++++.--+-.++.. +++|+.|+++++..++-... . ...+++
T Consensus 118 ~~L~~L~ls~N~I~~i~~l~~l----~~L~~L~l~~N~i~~~~~~~~----l~~L~~l~l~~n~i~~ie~~-~-~~~~~~ 187 (414)
T KOG0531|consen 118 VNLQVLDLSFNKITKLEGLSTL----TLLKELNLSGNLISDISGLES----LKSLKLLDLSYNRIVDIEND-E-LSELIS 187 (414)
T ss_pred hcchheeccccccccccchhhc----cchhhheeccCcchhccCCcc----chhhhcccCCcchhhhhhhh-h-hhhccc
Confidence 578889999985544 455433 338888888875333333333 77888888888865554321 1 234555
Q ss_pred Ccee
Q 025644 85 LNDV 88 (250)
Q Consensus 85 L~~L 88 (250)
|+.+
T Consensus 188 l~~l 191 (414)
T KOG0531|consen 188 LEEL 191 (414)
T ss_pred hHHH
Confidence 5543
No 66
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=43.44 E-value=18 Score=20.91 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=7.5
Q ss_pred CcCEEEccCCCC
Q 025644 7 SWEILDISGSDV 18 (250)
Q Consensus 7 ~L~~LnLsgC~I 18 (250)
+|++|+|++|+|
T Consensus 3 ~L~~L~L~~N~l 14 (26)
T smart00370 3 NLRELDLSNNQL 14 (26)
T ss_pred CCCEEECCCCcC
Confidence 566677766633
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=43.44 E-value=18 Score=20.91 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=7.5
Q ss_pred CcCEEEccCCCC
Q 025644 7 SWEILDISGSDV 18 (250)
Q Consensus 7 ~L~~LnLsgC~I 18 (250)
+|++|+|++|+|
T Consensus 3 ~L~~L~L~~N~l 14 (26)
T smart00369 3 NLRELDLSNNQL 14 (26)
T ss_pred CCCEEECCCCcC
Confidence 566677766633
No 68
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=42.49 E-value=17 Score=38.96 Aligned_cols=14 Identities=43% Similarity=0.418 Sum_probs=7.9
Q ss_pred HhCCCCCEEecCCC
Q 025644 54 LHCHSLETLRCGGS 67 (250)
Q Consensus 54 ~~C~~L~~L~l~gC 67 (250)
...++|++|.+-+-
T Consensus 639 ~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 639 LELQSLRVLRLPRS 652 (889)
T ss_pred hhcccccEEEeecc
Confidence 34566666666433
No 69
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=41.38 E-value=24 Score=38.51 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=32.9
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDR 43 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ 43 (250)
++|+.+|||.++++...+.+...+ |+|+|||+||-.+
T Consensus 452 ~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred CcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 689999999989999888887776 9999999999984
No 70
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=27.19 E-value=40 Score=33.73 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=28.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHH----HhCCCCCEEecCCCCCCc
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFL----LHCHSLETLRCGGSPRSN 71 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La----~~C~~L~~L~l~gC~~~d 71 (250)
++|+.|||++++||+..=.++ .+...|+.|-|. +..|+.+. ++...|++|++.|-.++.
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aF-e~~a~l~eL~L~------~N~l~~v~~~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAF-EGAAELQELYLT------RNKLEFVSSGMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred ccceEeccCCCccchhhhhhh-cchhhhhhhhcC------cchHHHHHHHhhhccccceeeeecCCeeEE
Confidence 456666666664443222222 133344444433 33333332 466677777777665444
No 71
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=26.05 E-value=81 Score=30.61 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=45.9
Q ss_pred CCCcCEEEccCC-CCCHHHHHHHHhcCCCCCe---EecCC--CCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHH
Q 025644 5 DSSWEILDISGS-DVSDFGLVKVAQMCKSLKA---VDISC--CDRITAAGVSEFLLHCHSLETLRCGGSPRSNHA 73 (250)
Q Consensus 5 d~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~---LdLS~--C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~ 73 (250)
|.+|+.+||... .|+..-+..++....+=++ ..+-+ -+..-.-++..+.+.|+.|.+|++.+--++...
T Consensus 197 d~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~g 271 (353)
T KOG3735|consen 197 DTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLG 271 (353)
T ss_pred CCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHH
Confidence 577888888888 8888888877766433322 22222 122334566677788999999999887666654
No 72
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=23.90 E-value=63 Score=29.55 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=49.7
Q ss_pred HhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCcee--cCCchhhhhhhccccc
Q 025644 27 AQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDV--EGDSWEELVNTDIGHG 104 (250)
Q Consensus 27 a~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~~L--~~~s~~dl~~~~i~~g 104 (250)
.-..-....+||+.-..+-... --+.++|.+|.++.-.++.-. ..|....|+|..| ...++.++..+.--..
T Consensus 38 g~~~d~~d~iDLtdNdl~~l~~----lp~l~rL~tLll~nNrIt~I~--p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~ 111 (233)
T KOG1644|consen 38 GATLDQFDAIDLTDNDLRKLDN----LPHLPRLHTLLLNNNRITRID--PDLDTFLPNLKTLILTNNSIQELGDLDPLAS 111 (233)
T ss_pred cccccccceecccccchhhccc----CCCccccceEEecCCcceeec--cchhhhccccceEEecCcchhhhhhcchhcc
Confidence 3344556667766654332222 246788999999877543332 2367778888886 3455666665555566
Q ss_pred ccccccccc
Q 025644 105 AQSLRWFVW 113 (250)
Q Consensus 105 ~~~L~~L~c 113 (250)
|+.|++|.+
T Consensus 112 ~p~L~~Ltl 120 (233)
T KOG1644|consen 112 CPKLEYLTL 120 (233)
T ss_pred CCccceeee
Confidence 777777765
No 73
>PF11661 DUF2986: Protein of unknown function (DUF2986); InterPro: IPR021677 This family of proteins has no known function.
Probab=22.59 E-value=57 Score=22.50 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHhhhh
Q 025644 186 SPNELSMAEKFRLAFVE 202 (250)
Q Consensus 186 ~~~~l~~ae~fr~a~~~ 202 (250)
-+.|||-||+.+|+-++
T Consensus 27 KpkYISKAeR~kl~aea 43 (44)
T PF11661_consen 27 KPKYISKAERAKLAAEA 43 (44)
T ss_pred CCCccCHHHHHHHHHcc
Confidence 67999999999998653
Done!