Query 025644
Match_columns 250
No_of_seqs 209 out of 742
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 14:33:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e4g_A ATP synthase subunit S, 99.8 3.4E-19 1.2E-23 152.1 6.5 106 6-133 61-171 (176)
2 2ast_B S-phase kinase-associat 99.6 8.3E-16 2.8E-20 135.6 11.2 161 6-170 142-313 (336)
3 3e4g_A ATP synthase subunit S, 99.6 3.3E-16 1.1E-20 133.7 6.6 81 6-87 85-171 (176)
4 3ogk_B Coronatine-insensitive 99.5 6.1E-14 2.1E-18 132.4 11.2 147 6-155 342-540 (592)
5 2ast_B S-phase kinase-associat 99.5 2.4E-13 8.2E-18 119.8 12.1 134 6-141 93-236 (336)
6 3ogk_B Coronatine-insensitive 99.5 4.3E-14 1.5E-18 133.5 7.8 126 6-133 318-467 (592)
7 2p1m_B Transport inhibitor res 99.4 2.1E-13 7.1E-18 128.5 8.3 127 6-133 338-485 (594)
8 2p1m_B Transport inhibitor res 99.4 3.1E-12 1.1E-16 120.5 12.9 110 20-133 421-535 (594)
9 3un9_A NLR family member X1; l 99.1 4.7E-10 1.6E-14 103.6 10.1 126 6-133 101-243 (372)
10 2ca6_A RAN GTPase-activating p 99.0 1.3E-09 4.3E-14 98.7 11.6 64 6-70 122-200 (386)
11 3un9_A NLR family member X1; l 99.0 2.7E-09 9.3E-14 98.5 11.2 119 6-126 126-261 (372)
12 1io0_A Tropomodulin; LRR prote 99.0 4.6E-09 1.6E-13 87.5 11.4 84 5-90 35-128 (185)
13 1z7x_W Ribonuclease inhibitor; 98.9 6.9E-09 2.4E-13 94.8 12.0 126 6-133 227-374 (461)
14 1z7x_W Ribonuclease inhibitor; 98.9 2.6E-09 9.1E-14 97.6 9.1 62 6-68 284-352 (461)
15 2ca6_A RAN GTPase-activating p 98.9 6.8E-09 2.3E-13 93.9 11.4 83 6-90 94-194 (386)
16 1io0_A Tropomodulin; LRR prote 98.7 9.1E-08 3.1E-12 79.6 10.8 82 6-89 65-157 (185)
17 3goz_A Leucine-rich repeat-con 98.6 9.6E-08 3.3E-12 86.1 9.3 65 6-71 109-181 (362)
18 2ra8_A Uncharacterized protein 98.5 9.5E-08 3.3E-12 88.5 5.8 54 6-65 172-227 (362)
19 3goz_A Leucine-rich repeat-con 98.5 2.3E-07 7.8E-12 83.6 6.9 61 8-69 24-92 (362)
20 2je0_A Acidic leucine-rich nuc 98.3 5.1E-07 1.7E-11 70.9 5.5 122 6-133 17-144 (149)
21 2ell_A Acidic leucine-rich nuc 98.3 3.9E-08 1.3E-12 78.9 -1.8 122 6-133 24-151 (168)
22 2je0_A Acidic leucine-rich nuc 98.3 1.5E-06 5E-11 68.2 6.5 102 6-113 42-147 (149)
23 1pgv_A TMD-1, tropomodulin TMD 98.3 6.6E-06 2.3E-10 71.0 11.1 83 5-89 40-132 (197)
24 2ra8_A Uncharacterized protein 98.2 1.8E-06 6.3E-11 79.8 7.3 73 6-80 252-329 (362)
25 4ezg_A Putative uncharacterize 98.2 7E-07 2.4E-11 73.7 3.4 118 6-133 66-185 (197)
26 1pgv_A TMD-1, tropomodulin TMD 98.1 1.6E-05 5.6E-10 68.5 10.0 84 5-89 69-163 (197)
27 4ezg_A Putative uncharacterize 98.1 2.4E-06 8.3E-11 70.4 4.3 100 6-113 88-188 (197)
28 2ell_A Acidic leucine-rich nuc 98.1 1.1E-06 3.7E-11 70.3 1.8 102 6-113 49-154 (168)
29 4fmz_A Internalin; leucine ric 98.0 3.3E-06 1.1E-10 74.5 4.6 73 6-89 66-138 (347)
30 4fmz_A Internalin; leucine ric 97.9 1.2E-05 4E-10 70.9 5.7 73 6-89 177-249 (347)
31 1a9n_A U2A', U2A'; complex (nu 97.8 8.5E-06 2.9E-10 66.0 3.3 120 6-134 19-145 (176)
32 1a9n_A U2A', U2A'; complex (nu 97.8 5.7E-06 2E-10 67.0 1.9 77 7-89 43-119 (176)
33 1wwl_A Monocyte differentiatio 97.8 2.1E-05 7.1E-10 69.3 5.3 64 6-71 121-187 (312)
34 3rgz_A Protein brassinosteroid 97.6 8.1E-06 2.8E-10 81.0 -0.0 30 103-133 220-251 (768)
35 4glp_A Monocyte differentiatio 97.6 2.9E-05 9.9E-10 68.2 3.1 105 6-113 117-231 (310)
36 1h6u_A Internalin H; cell adhe 97.5 4.5E-05 1.5E-09 67.4 3.7 55 7-68 42-96 (308)
37 2z7x_B TOLL-like receptor 1, v 97.5 8.4E-05 2.9E-09 69.1 4.6 61 28-90 321-381 (520)
38 1o6v_A Internalin A; bacterial 97.4 0.00024 8.2E-09 65.8 7.0 32 7-41 200-231 (466)
39 1h6t_A Internalin B; cell adhe 97.4 0.00012 4E-09 64.3 4.4 111 6-133 90-204 (291)
40 1h6t_A Internalin B; cell adhe 97.4 0.00016 5.3E-09 63.5 4.9 57 6-69 68-124 (291)
41 3v47_A TOLL-like receptor 5B a 97.3 3.2E-05 1.1E-09 70.5 0.3 13 7-19 31-43 (455)
42 1o6v_A Internalin A; bacterial 97.3 0.00017 5.8E-09 66.8 5.2 74 6-90 243-316 (466)
43 3o53_A Protein LRIM1, AGAP0063 97.3 2.9E-05 9.9E-10 68.5 -0.1 63 6-70 120-182 (317)
44 1ds9_A Outer arm dynein; leuci 97.3 1E-05 3.6E-10 66.6 -2.9 119 6-134 48-179 (198)
45 1h6u_A Internalin H; cell adhe 97.3 0.00015 5E-09 64.1 4.2 111 6-133 107-221 (308)
46 2z66_A Variable lymphocyte rec 97.3 8.7E-06 3E-10 70.8 -3.7 80 6-90 28-108 (306)
47 1ds9_A Outer arm dynein; leuci 97.3 6.6E-05 2.3E-09 61.8 1.8 79 6-91 70-148 (198)
48 3rw6_A Nuclear RNA export fact 97.3 0.0002 6.7E-09 64.1 4.8 80 7-89 171-257 (267)
49 1xeu_A Internalin C; cellular 97.3 6.5E-05 2.2E-09 65.1 1.6 72 6-89 41-112 (263)
50 1xku_A Decorin; proteoglycan, 97.3 0.00015 5.3E-09 63.6 3.8 29 104-133 214-244 (330)
51 2z7x_B TOLL-like receptor 1, v 97.2 0.00034 1.1E-08 65.1 6.0 121 6-133 324-448 (520)
52 4fcg_A Uncharacterized protein 97.2 3.6E-05 1.2E-09 68.7 -0.6 120 6-133 150-281 (328)
53 2z81_A CD282 antigen, TOLL-lik 97.2 0.00083 2.8E-08 62.6 8.6 83 6-90 310-394 (549)
54 1m9s_A Internalin B; cell inva 97.2 0.00014 4.9E-09 71.3 3.5 57 6-69 65-121 (605)
55 1ozn_A Reticulon 4 receptor; N 97.2 3.3E-05 1.1E-09 66.6 -1.2 60 6-68 32-91 (285)
56 3rfs_A Internalin B, repeat mo 97.2 0.00021 7.2E-09 61.6 3.9 117 6-133 41-161 (272)
57 1xeu_A Internalin C; cellular 97.2 0.00012 4.1E-09 63.5 2.1 110 6-133 63-176 (263)
58 1ozn_A Reticulon 4 receptor; N 97.2 4.1E-05 1.4E-09 66.0 -0.8 122 6-133 56-181 (285)
59 1m9s_A Internalin B; cell inva 97.2 0.00026 9E-09 69.4 4.6 111 6-133 87-201 (605)
60 2z62_A TOLL-like receptor 4, v 97.2 2.6E-05 8.9E-10 66.9 -2.3 80 6-90 28-107 (276)
61 4fcg_A Uncharacterized protein 97.1 8.8E-05 3E-09 66.2 0.6 100 6-112 183-283 (328)
62 4g8a_A TOLL-like receptor 4; l 97.1 7.5E-05 2.6E-09 69.8 -0.3 79 6-89 52-130 (635)
63 4glp_A Monocyte differentiatio 97.0 0.00062 2.1E-08 59.6 5.4 84 6-90 145-231 (310)
64 2z66_A Variable lymphocyte rec 97.0 4.7E-05 1.6E-09 66.1 -1.9 102 6-112 126-229 (306)
65 2z63_A TOLL-like receptor 4, v 97.0 3.1E-05 1.1E-09 72.3 -3.3 39 29-68 345-384 (570)
66 3o53_A Protein LRIM1, AGAP0063 97.0 6.2E-05 2.1E-09 66.4 -1.3 78 6-90 99-176 (317)
67 3oja_A Leucine-rich immune mol 97.0 0.00011 3.8E-09 69.4 0.1 64 6-71 120-183 (487)
68 2z80_A TOLL-like receptor 2, v 96.9 0.00018 6E-09 64.0 0.9 59 7-68 53-111 (353)
69 3t6q_A CD180 antigen; protein- 96.9 7.4E-05 2.5E-09 70.7 -1.7 59 6-68 278-336 (606)
70 3zyi_A Leucine-rich repeat-con 96.9 0.00012 4.2E-09 67.5 -0.5 61 6-69 75-135 (452)
71 2id5_A Lingo-1, leucine rich r 96.9 7.8E-05 2.7E-09 68.8 -2.0 59 6-67 32-90 (477)
72 2o6q_A Variable lymphocyte rec 96.9 0.00019 6.5E-09 61.7 0.6 121 6-133 37-161 (270)
73 3rfs_A Internalin B, repeat mo 96.8 0.0003 1E-08 60.6 1.4 119 6-133 63-185 (272)
74 3zyj_A Leucine-rich repeat-con 96.8 0.00017 5.9E-09 66.3 -0.2 60 6-68 64-123 (440)
75 3oja_A Leucine-rich immune mol 96.8 0.00013 4.6E-09 68.8 -1.2 57 7-69 100-156 (487)
76 3a79_B TLR6, VLRB.59, TOLL-lik 96.8 0.00069 2.4E-08 64.1 3.6 102 7-113 332-435 (562)
77 3vq2_A TLR4, TOLL-like recepto 96.8 7.5E-05 2.5E-09 70.7 -3.2 10 7-16 308-317 (606)
78 4g8a_A TOLL-like receptor 4; l 96.7 0.00022 7.7E-09 66.6 -0.1 115 6-125 76-197 (635)
79 2z81_A CD282 antigen, TOLL-lik 96.7 0.002 6.8E-08 60.0 6.4 116 6-133 334-455 (549)
80 1dce_A Protein (RAB geranylger 96.7 0.00036 1.2E-08 67.8 1.3 117 6-133 441-564 (567)
81 3j0a_A TOLL-like receptor 5; m 96.7 8.9E-05 3E-09 74.3 -3.1 81 6-90 24-104 (844)
82 3zyi_A Leucine-rich repeat-con 96.7 0.0002 6.8E-09 66.1 -0.9 82 6-92 99-180 (452)
83 1wwl_A Monocyte differentiatio 96.7 0.0044 1.5E-07 54.3 7.8 107 6-113 149-260 (312)
84 2z63_A TOLL-like receptor 4, v 96.7 0.00011 3.9E-09 68.5 -2.8 102 6-112 421-524 (570)
85 2xwt_C Thyrotropin receptor; s 96.6 3.8E-05 1.3E-09 64.7 -5.9 81 6-90 31-112 (239)
86 3zyj_A Leucine-rich repeat-con 96.6 0.0003 1E-08 64.7 -0.5 82 6-92 88-169 (440)
87 3rgz_A Protein brassinosteroid 96.5 0.00041 1.4E-08 68.7 0.3 60 6-69 151-212 (768)
88 3a79_B TLR6, VLRB.59, TOLL-lik 96.5 0.0018 6E-08 61.3 4.3 121 6-133 353-477 (562)
89 2ft3_A Biglycan; proteoglycan, 96.4 0.00056 1.9E-08 60.2 0.4 59 6-70 102-160 (332)
90 3o6n_A APL1; leucine-rich repe 96.4 0.0006 2E-08 61.2 0.6 119 6-133 248-368 (390)
91 3t6q_A CD180 antigen; protein- 96.4 0.00022 7.6E-09 67.4 -2.4 82 6-91 376-457 (606)
92 2o6s_A Variable lymphocyte rec 96.4 0.00052 1.8E-08 56.4 -0.1 102 6-113 28-131 (208)
93 2xot_A Amphoterin-induced prot 96.4 0.00033 1.1E-08 63.0 -1.4 61 6-69 64-124 (361)
94 3m19_A Variable lymphocyte rec 96.4 0.00055 1.9E-08 58.1 -0.0 101 6-112 35-137 (251)
95 3bz5_A Internalin-J, INLJ; leu 96.4 0.0014 4.8E-08 61.4 2.7 32 6-41 64-95 (457)
96 3rw6_A Nuclear RNA export fact 96.3 0.00079 2.7E-08 60.1 0.9 52 20-72 159-211 (267)
97 3oja_B Anopheles plasmodium-re 96.3 0.00046 1.6E-08 66.2 -0.8 57 7-68 233-289 (597)
98 4ecn_A Leucine-rich repeat pro 96.3 0.0014 4.6E-08 67.4 2.5 38 29-68 489-526 (876)
99 1dce_A Protein (RAB geranylger 96.3 0.00085 2.9E-08 65.1 0.9 79 6-91 463-541 (567)
100 2o6s_A Variable lymphocyte rec 96.2 0.00066 2.2E-08 55.8 -0.4 101 6-112 52-154 (208)
101 3bz5_A Internalin-J, INLJ; leu 96.2 0.0021 7.2E-08 60.2 3.0 72 6-90 42-113 (457)
102 2id5_A Lingo-1, leucine rich r 96.2 0.0013 4.5E-08 60.5 1.3 100 7-112 225-326 (477)
103 2o6q_A Variable lymphocyte rec 96.1 0.001 3.4E-08 57.1 0.3 121 6-133 61-185 (270)
104 4ecn_A Leucine-rich repeat pro 96.1 0.003 1E-07 64.8 3.7 104 6-112 491-601 (876)
105 2v70_A SLIT-2, SLIT homolog 2 96.1 0.00066 2.2E-08 57.1 -1.0 80 6-89 32-111 (220)
106 3vq2_A TLR4, TOLL-like recepto 96.1 0.0016 5.4E-08 61.6 1.5 124 6-133 80-233 (606)
107 3oja_B Anopheles plasmodium-re 96.1 0.0012 4.2E-08 63.3 0.6 118 6-132 254-373 (597)
108 3v47_A TOLL-like receptor 5B a 96.0 0.002 6.7E-08 58.5 1.9 82 6-90 79-161 (455)
109 3m19_A Variable lymphocyte rec 96.0 0.0011 3.6E-08 56.3 -0.1 80 6-90 59-138 (251)
110 1ziw_A TOLL-like receptor 3; i 96.0 0.002 6.9E-08 61.8 1.8 60 6-68 25-84 (680)
111 3g06_A SSPH2 (leucine-rich rep 95.9 0.0041 1.4E-07 61.2 3.7 83 30-125 220-305 (622)
112 3e6j_A Variable lymphocyte rec 95.9 0.0013 4.5E-08 55.5 0.1 100 6-112 64-165 (229)
113 3j0a_A TOLL-like receptor 5; m 95.8 0.0004 1.4E-08 69.5 -4.0 81 6-89 48-129 (844)
114 1p9a_G Platelet glycoprotein I 95.8 0.0014 4.8E-08 57.5 -0.2 58 6-69 55-112 (290)
115 2z80_A TOLL-like receptor 2, v 95.8 0.006 2.1E-07 54.0 3.9 82 6-90 222-308 (353)
116 2xot_A Amphoterin-induced prot 95.8 0.0014 4.7E-08 59.0 -0.3 79 6-88 39-117 (361)
117 2o6r_A Variable lymphocyte rec 95.7 0.00094 3.2E-08 53.5 -1.5 101 6-112 28-130 (177)
118 3o6n_A APL1; leucine-rich repe 95.6 0.0035 1.2E-07 56.2 1.5 76 6-91 272-347 (390)
119 1xku_A Decorin; proteoglycan, 95.6 0.0024 8.1E-08 56.0 0.2 80 6-91 192-271 (330)
120 4b8c_D Glucose-repressible alc 95.5 0.0018 6E-08 64.6 -0.7 77 6-90 224-300 (727)
121 3g06_A SSPH2 (leucine-rich rep 95.5 0.0051 1.8E-07 60.5 2.5 53 6-69 61-113 (622)
122 2z62_A TOLL-like receptor 4, v 95.4 0.0023 8E-08 54.6 -0.5 82 6-91 76-157 (276)
123 2ft3_A Biglycan; proteoglycan, 95.3 0.0016 5.4E-08 57.3 -1.7 62 6-71 217-278 (332)
124 1ziw_A TOLL-like receptor 3; i 95.3 0.0023 7.7E-08 61.5 -0.9 34 7-41 74-107 (680)
125 4eco_A Uncharacterized protein 95.3 0.0064 2.2E-07 59.0 2.2 82 6-89 249-336 (636)
126 3cvr_A Invasion plasmid antige 95.1 0.01 3.6E-07 57.9 3.3 53 6-69 80-132 (571)
127 1ogq_A PGIP-2, polygalacturona 95.1 0.002 6.8E-08 56.7 -1.6 77 7-90 175-251 (313)
128 3g39_A Variable lymphocyte rec 95.1 0.0033 1.1E-07 50.8 -0.3 59 6-68 30-89 (170)
129 2v70_A SLIT-2, SLIT homolog 2 95.1 0.0036 1.2E-07 52.5 -0.1 101 6-112 57-159 (220)
130 3sb4_A Hypothetical leucine ri 94.6 0.0084 2.9E-07 52.8 1.1 23 18-40 213-235 (329)
131 2r9u_A Variable lymphocyte rec 94.6 0.0057 1.9E-07 49.7 -0.1 60 6-69 33-93 (174)
132 3sb4_A Hypothetical leucine ri 94.6 0.015 5.3E-07 51.1 2.6 34 6-41 101-134 (329)
133 2o6r_A Variable lymphocyte rec 94.4 0.0057 1.9E-07 48.9 -0.7 80 6-90 52-131 (177)
134 3g39_A Variable lymphocyte rec 94.3 0.0086 2.9E-07 48.3 0.2 63 6-71 54-116 (170)
135 1p9a_G Platelet glycoprotein I 94.3 0.0068 2.3E-07 53.0 -0.4 76 6-89 31-106 (290)
136 2wfh_A SLIT homolog 2 protein 94.2 0.0077 2.6E-07 49.6 -0.2 100 6-112 31-132 (193)
137 4eco_A Uncharacterized protein 94.2 0.036 1.2E-06 53.7 4.5 62 6-70 273-343 (636)
138 2v9t_B SLIT homolog 2 protein 94.1 0.008 2.7E-07 50.3 -0.2 114 6-125 56-174 (220)
139 3e6j_A Variable lymphocyte rec 94.1 0.011 3.7E-07 49.7 0.6 79 6-90 88-166 (229)
140 1jl5_A Outer protein YOPM; leu 94.1 0.022 7.7E-07 53.1 2.7 32 7-41 174-205 (454)
141 2wfh_A SLIT homolog 2 protein 94.1 0.014 4.7E-07 48.1 1.1 71 9-89 13-84 (193)
142 1ogq_A PGIP-2, polygalacturona 93.9 0.003 1E-07 55.6 -3.5 62 6-70 125-187 (313)
143 2r9u_A Variable lymphocyte rec 93.8 0.014 4.8E-07 47.4 0.6 62 6-71 57-119 (174)
144 2v9t_B SLIT homolog 2 protein 93.7 0.0097 3.3E-07 49.8 -0.5 102 6-113 32-135 (220)
145 1w8a_A SLIT protein; signaling 93.4 0.0081 2.8E-07 49.1 -1.5 102 6-112 29-132 (192)
146 4b8c_D Glucose-repressible alc 93.4 0.012 4.1E-07 58.6 -0.6 59 6-69 247-305 (727)
147 1w8a_A SLIT protein; signaling 93.4 0.0094 3.2E-07 48.7 -1.1 37 32-69 30-66 (192)
148 3cvr_A Invasion plasmid antige 92.0 0.061 2.1E-06 52.4 2.4 13 29-41 138-150 (571)
149 1jl5_A Outer protein YOPM; leu 91.9 0.062 2.1E-06 50.1 2.2 69 6-91 297-365 (454)
150 2xwt_C Thyrotropin receptor; s 91.8 0.011 3.9E-07 49.3 -2.7 75 10-90 134-212 (239)
151 2ifg_A High affinity nerve gro 89.2 0.076 2.6E-06 46.6 0.1 62 6-70 31-93 (347)
152 4ay9_X Follicle-stimulating ho 87.5 0.047 1.6E-06 48.5 -2.4 61 7-70 155-215 (350)
153 2ifg_A High affinity nerve gro 84.6 0.19 6.5E-06 44.0 0.1 62 6-72 56-118 (347)
154 4fdw_A Leucine rich hypothetic 70.1 0.89 3E-05 41.8 -0.1 12 29-40 178-189 (401)
155 4ay9_X Follicle-stimulating ho 67.0 0.22 7.5E-06 44.1 -4.7 36 6-42 30-65 (350)
156 3rfe_A Platelet glycoprotein I 60.4 3.4 0.00012 32.0 1.6 37 32-70 32-68 (130)
157 4fs7_A Uncharacterized protein 54.4 4.2 0.00014 36.4 1.3 96 27-133 293-392 (394)
158 4fdw_A Leucine rich hypothetic 50.0 6.3 0.00021 36.1 1.8 114 6-133 226-349 (401)
159 4gt6_A Cell surface protein; l 46.3 13 0.00045 33.1 3.3 113 6-133 265-382 (394)
160 4gt6_A Cell surface protein; l 40.4 12 0.00041 33.3 2.1 74 6-91 288-365 (394)
161 4h09_A Hypothetical leucine ri 31.0 7.3 0.00025 34.2 -1.0 73 6-90 263-340 (379)
No 1
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.76 E-value=3.4e-19 Score=152.09 Aligned_cols=106 Identities=10% Similarity=0.104 Sum_probs=93.6
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHH---hCCCCCEEecCCCCCCcHHHHHHHhhhC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRCLGILK 82 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~---~C~~L~~L~l~gC~~~dd~al~~l~~~c 82 (250)
-.|+.|||++|.|||.|+..+ .+|++|++|+|++|.+|||.|+..|+. .|++|++|++++|+.++|.++.+|+ .|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 469999999999999999999 589999999999999999999999998 4899999999999988888898887 47
Q ss_pred CCCceecCCchhhhhhhccccccccccccccCCCCHHHH--HHHHhcCCCcee
Q 025644 83 PKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSI--EMMSTECPRIIV 133 (250)
Q Consensus 83 p~L~~L~~~s~~dl~~~~i~~g~~~L~~L~c~~ITD~sL--~~La~~Cp~L~~ 133 (250)
|+|++|+. -.|++|||.++ ..+...-|++++
T Consensus 139 ~~L~~L~L--------------------~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFL--------------------SDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEE--------------------ESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEEC--------------------CCCCCCCchHHHHHHHHHHCCCcEE
Confidence 88877632 25899999874 667788898887
No 2
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=8.3e-16 Score=135.57 Aligned_cols=161 Identities=17% Similarity=0.224 Sum_probs=124.4
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCC-CCCEEecCCCC-CCcHHHHHHHhhhC
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCH-SLETLRCGGSP-RSNHAARRCLGILK 82 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~-~L~~L~l~gC~-~~dd~al~~l~~~c 82 (250)
++|++|+|++| .+||.++..+..+|++|++|+|++|.++++.++..+..+|+ +|++|++++|. ..++..+..+...+
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 221 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 221 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC
Confidence 68899999999 89999999888899999999999998899999999999999 99999999995 45555566666779
Q ss_pred CCCceecCCchhhh---hhhccccccccccccc---cCCCCHHHHHHHHhcCCCcee--cCCCCCCCcCCccCCCCCCCC
Q 025644 83 PKLNDVEGDSWEEL---VNTDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIV--NPKPSPFGFRGFEVPREAFPD 154 (250)
Q Consensus 83 p~L~~L~~~s~~dl---~~~~i~~g~~~L~~L~---c~~ITD~sL~~La~~Cp~L~~--~~~cs~~~~~g~~~~~~~l~~ 154 (250)
|+|+.|+...+..+ ....+ .++++|+.|+ |..++|.++..+. +||+|+. ..+| ++..+.......+|.
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~--i~~~~~~~l~~~l~~ 297 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTLQLLKEALPH 297 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTTCHHHHHHHSTT
T ss_pred CCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc--cCHHHHHHHHhhCcc
Confidence 99999866554322 22223 3457788774 7789999887776 5999999 4445 555555544457899
Q ss_pred CcCCCccccccCcCcc
Q 025644 155 ITLDDPFVNDIDPSAW 170 (250)
Q Consensus 155 ~~l~~~~~~~i~~~~w 170 (250)
+.+++..+..+.|...
T Consensus 298 L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 298 LQINCSHFTTIARPTI 313 (336)
T ss_dssp SEESCCCSCCTTCSSC
T ss_pred eEEecccCccccCCcc
Confidence 9999999998888653
No 3
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.62 E-value=3.3e-16 Score=133.66 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=72.6
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhc---CCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHH--HHHHh
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQM---CKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAA--RRCLG 79 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~---C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~a--l~~l~ 79 (250)
++|+.|+|++| .|||.||..|+.. |++|++||||+|.+|||.|+.+|+ +|++|++|++++|+.+++.+ ...+.
T Consensus 85 ~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~ 163 (176)
T 3e4g_A 85 QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQAFK 163 (176)
T ss_dssp SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCCHHHHHHHHH
T ss_pred CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCchHHHHHHHH
Confidence 68999999999 9999999999984 899999999999999999999998 59999999999998666543 56677
Q ss_pred hhCCCCce
Q 025644 80 ILKPKLND 87 (250)
Q Consensus 80 ~~cp~L~~ 87 (250)
...|+++.
T Consensus 164 ~~lP~l~V 171 (176)
T 3e4g_A 164 TSLPSLEL 171 (176)
T ss_dssp HHCTTCEE
T ss_pred HHCCCcEE
Confidence 88999875
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.50 E-value=6.1e-14 Score=132.40 Aligned_cols=147 Identities=19% Similarity=0.135 Sum_probs=82.7
Q ss_pred CCcCEEEccC----------C-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCC---CCCCc
Q 025644 6 SSWEILDISG----------S-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGG---SPRSN 71 (250)
Q Consensus 6 ~~L~~LnLsg----------C-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~g---C~~~d 71 (250)
++|+.|+|++ | .||+.|+..++.+|++|++|++ +|.++|+.++..++.+|++|++|++++ |...+
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 4577777773 6 6777777777777777777777 556677777777766666666666653 32222
Q ss_pred H----HHHHHHhhhCCCCceecC---------------------------Cc--hhhhhhhccccccccccccc---cCC
Q 025644 72 H----AARRCLGILKPKLNDVEG---------------------------DS--WEELVNTDIGHGAQSLRWFV---WPN 115 (250)
Q Consensus 72 d----~al~~l~~~cp~L~~L~~---------------------------~s--~~dl~~~~i~~g~~~L~~L~---c~~ 115 (250)
+ .++..+...|++|+.|+. .. ..+.....+..+|++|+.|. |+
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~- 499 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC- 499 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-
Confidence 1 233444444555555433 21 11111222334555566653 44
Q ss_pred CCHHHHHHHHhcCCCcee--cCCCCCCCcCCccCCCCCCCCC
Q 025644 116 IDKDSIEMMSTECPRIIV--NPKPSPFGFRGFEVPREAFPDI 155 (250)
Q Consensus 116 ITD~sL~~La~~Cp~L~~--~~~cs~~~~~g~~~~~~~l~~~ 155 (250)
|||.++..+..+||+|+. ...|. ++..|.+....++|.+
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYW 540 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTE
T ss_pred CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCc
Confidence 666666666666666666 44454 5555555555555554
No 5
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=2.4e-13 Score=119.77 Aligned_cols=134 Identities=13% Similarity=0.168 Sum_probs=90.2
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|.|++.++..+..+|++|++|+|++| ++++.+...++. |++|++|++++|...++.++..+...||+|
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 567888888887888777777777888888888887 477777777765 788888888888555554455556667888
Q ss_pred ceecCCchhhhh---hhccccccc-cccccc---cC-CCCHHHHHHHHhcCCCcee--cCCCCCCC
Q 025644 86 NDVEGDSWEELV---NTDIGHGAQ-SLRWFV---WP-NIDKDSIEMMSTECPRIIV--NPKPSPFG 141 (250)
Q Consensus 86 ~~L~~~s~~dl~---~~~i~~g~~-~L~~L~---c~-~ITD~sL~~La~~Cp~L~~--~~~cs~~~ 141 (250)
++|+...+..+. ......+++ +|+.|+ |. .++|.++..+..+||+|+. ...|..++
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 877554432222 222334555 666664 44 6777777777777888877 44444343
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.48 E-value=4.3e-14 Score=133.47 Aligned_cols=126 Identities=20% Similarity=0.282 Sum_probs=100.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCC----------CCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHH
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISC----------CDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAAR 75 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~----------C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al 75 (250)
++|+.|+|+ ..++|.|+..++.+|++|++|+|++ |..+|+.|+..++.+|++|++|++ +|...++.+.
T Consensus 318 ~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~ 395 (592)
T 3ogk_B 318 PNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESL 395 (592)
T ss_dssp TTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHH
T ss_pred cCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHH
Confidence 689999999 5799999999999999999999995 999999999999999999999999 6766677788
Q ss_pred HHHhhhCCCCceecCC------chhhh----hhhccccccccccccc---cC-CCCHHHHHHHHhcCCCcee
Q 025644 76 RCLGILKPKLNDVEGD------SWEEL----VNTDIGHGAQSLRWFV---WP-NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 76 ~~l~~~cp~L~~L~~~------s~~dl----~~~~i~~g~~~L~~L~---c~-~ITD~sL~~La~~Cp~L~~ 133 (250)
..++..||+|++|+.. .+++. ....+..+|++|+.|. |. .++|.++..+...||+|+.
T Consensus 396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~ 467 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467 (592)
T ss_dssp HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence 8999999999998553 22221 1222345566777765 24 3777777777777777776
No 7
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.42 E-value=2.1e-13 Score=128.55 Aligned_cols=127 Identities=14% Similarity=0.175 Sum_probs=75.0
Q ss_pred CCcCEEEc--------cCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecC-----CCCCCc
Q 025644 6 SSWEILDI--------SGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCG-----GSPRSN 71 (250)
Q Consensus 6 ~~L~~LnL--------sgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~-----gC~~~d 71 (250)
++|+.|+| .+| .|||.|+..++.+|++|++|++ +|.++|+.++..++.+||+|++|+++ +|..++
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 45666666 334 6677777666666666666633 45566777777776667777777766 554444
Q ss_pred ----HHHHHHHhhhCCCCceecCCc-hhhhhhhccccccccccccc--cCCCCHHHHHHHHhcCCCcee
Q 025644 72 ----HAARRCLGILKPKLNDVEGDS-WEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 72 ----d~al~~l~~~cp~L~~L~~~s-~~dl~~~~i~~g~~~L~~L~--c~~ITD~sL~~La~~Cp~L~~ 133 (250)
+.++..+...|++|+.|+..+ ..+.....++.++++|++|. +-.|||.++..++.+||+|+.
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~ 485 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCE
T ss_pred CCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCE
Confidence 455555666666666664422 22222233444455666654 234666666666666666666
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.38 E-value=3.1e-12 Score=120.51 Aligned_cols=110 Identities=14% Similarity=0.132 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCceecCCch--hhhh
Q 025644 20 DFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSW--EELV 97 (250)
Q Consensus 20 D~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~~L~~~s~--~dl~ 97 (250)
|.|+..+..+|++|++|+|++ ++||.++..++.++++|++|++++|..++ .+...+...||+|+.|+...+ .+..
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSD-LGMHHVLSGCDSLRKLEIRDCPFGDKA 497 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSH-HHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred hhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcH-HHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence 445555555555555555544 45555555555555555555555554322 233344444555555433221 1112
Q ss_pred hhccccccccccccc---cCCCCHHHHHHHHhcCCCcee
Q 025644 98 NTDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 98 ~~~i~~g~~~L~~L~---c~~ITD~sL~~La~~Cp~L~~ 133 (250)
...+..++++|+.|. |+. |+.++..++..+|+|++
T Consensus 498 ~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i 535 (594)
T 2p1m_B 498 LLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNV 535 (594)
T ss_dssp HHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEE
T ss_pred HHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEE
Confidence 222334444555442 332 55555555555555544
No 9
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.06 E-value=4.7e-10 Score=103.63 Aligned_cols=126 Identities=8% Similarity=0.079 Sum_probs=83.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHH----hCCCCCEEecCCCCCCcHHHHHHHh--
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLL----HCHSLETLRCGGSPRSNHAARRCLG-- 79 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~----~C~~L~~L~l~gC~~~dd~al~~l~-- 79 (250)
.+|+.|||++|.|+|.|+..++..+++|++|||++| +|||.|+..|+. .+++|++|++++|..++.. ...++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~-~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG-VAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH-HHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH-HHHHHHH
Confidence 477888888888888888888877778888888887 588888887774 3677888888888655443 33333
Q ss_pred -hhCCCCceecCCc--hhhhhhhccc---ccccccccccc--CCCCHHHHHHHHh---cCCCcee
Q 025644 80 -ILKPKLNDVEGDS--WEELVNTDIG---HGAQSLRWFVW--PNIDKDSIEMMST---ECPRIIV 133 (250)
Q Consensus 80 -~~cp~L~~L~~~s--~~dl~~~~i~---~g~~~L~~L~c--~~ITD~sL~~La~---~Cp~L~~ 133 (250)
..+++|++|+... +.+.....++ ..+.+|+.|+. -.|||.+...++. .+|.|+.
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~ 243 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLEL 243 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCE
Confidence 3467777774433 3333332232 23346777653 3688887777654 5677777
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.03 E-value=1.3e-09 Score=98.70 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=30.9
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcC------------CCCCeEecCCCCCcCHHHHHHHHH---hCCCCCEEecCCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMC------------KSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRS 70 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C------------~~L~~LdLS~C~~ITD~gl~~La~---~C~~L~~L~l~gC~~~ 70 (250)
++|++|+|++|.|++.+...++... ++|++|+|++| ++++.++..++. ++++|++|++++|...
T Consensus 122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 3455555555555555544444332 45555555554 255544444333 4555555555555443
No 11
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.97 E-value=2.7e-09 Score=98.49 Aligned_cols=119 Identities=11% Similarity=0.075 Sum_probs=92.3
Q ss_pred CCcCEEEccCCCCCHHHHHHHHh----cCCCCCeEecCCCCCcCHHHHHHHH---HhCCCCCEEecCCCCCCcHHHHHHH
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQ----MCKSLKAVDISCCDRITAAGVSEFL---LHCHSLETLRCGGSPRSNHAARRCL 78 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~----~C~~L~~LdLS~C~~ITD~gl~~La---~~C~~L~~L~l~gC~~~dd~al~~l 78 (250)
.+|+.|||++|.|+|.|+..++. .+++|++|||++| +||+.|+..++ ..+++|++|++++|...+.. ...|
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g-~~~L 203 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG-LELL 203 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH-HHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH-HHHH
Confidence 36899999999999999999885 4688999999999 59999999997 57899999999999866654 3444
Q ss_pred h---hhCCCCceecCCc--hhhhhhhcccc---cccccccccc--CCCCHHHHHHHHh
Q 025644 79 G---ILKPKLNDVEGDS--WEELVNTDIGH---GAQSLRWFVW--PNIDKDSIEMMST 126 (250)
Q Consensus 79 ~---~~cp~L~~L~~~s--~~dl~~~~i~~---g~~~L~~L~c--~~ITD~sL~~La~ 126 (250)
. ..+++|+.|+... +.+.....++. .+++|+.|+. -.|+|.+...+..
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 4 4467899985543 34443333443 4567888863 4799999999974
No 12
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.96 E-value=4.6e-09 Score=87.47 Aligned_cols=84 Identities=13% Similarity=0.043 Sum_probs=68.7
Q ss_pred CCCcCEEEccCC-CCCHHHHHHHHhc---CCCCCeEecCCCCCcCHHHHHHHHH---hCCCCCEEecCCCCCCcHHHHHH
Q 025644 5 DSSWEILDISGS-DVSDFGLVKVAQM---CKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRC 77 (250)
Q Consensus 5 d~~L~~LnLsgC-~ITD~gL~~la~~---C~~L~~LdLS~C~~ITD~gl~~La~---~C~~L~~L~l~gC~~~dd~al~~ 77 (250)
.++|+.|+|++| .|+|.|+..++.. ++.|++|||++|. |+|.|+..|+. .++.|++|++++|...+.. ...
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g-~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSG-ILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH-HHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH-HHH
Confidence 378999999999 9999999999874 7899999999995 99999998875 5689999999999877764 344
Q ss_pred Hh---hhCCCCceecC
Q 025644 78 LG---ILKPKLNDVEG 90 (250)
Q Consensus 78 l~---~~cp~L~~L~~ 90 (250)
|+ ..++.|++|+.
T Consensus 113 l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 113 LVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHGGGGCSSCCEEEC
T ss_pred HHHHHHhCCCceEEEe
Confidence 44 33556777654
No 13
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.92 E-value=6.9e-09 Score=94.80 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=79.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHh----cCCCCCeEecCCCCCcCHHHHHHHHH---hCCCCCEEecCCCCCCcHHHHHHH
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQ----MCKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRCL 78 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~----~C~~L~~LdLS~C~~ITD~gl~~La~---~C~~L~~L~l~gC~~~dd~al~~l 78 (250)
++|+.|+|++|.|+|.|+..++. .+++|++|+|++| +||+.|+..++. +|++|++|+++++...+. +...+
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l 304 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDE-GARLL 304 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH-HHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchH-HHHHH
Confidence 67888888888888888877765 4788888888888 688888666654 588888888888865444 23333
Q ss_pred hh----hCCCCceecCCch--hhhhhhccc---ccccccccccc--CCCCHHHHHHHHhc----CCCcee
Q 025644 79 GI----LKPKLNDVEGDSW--EELVNTDIG---HGAQSLRWFVW--PNIDKDSIEMMSTE----CPRIIV 133 (250)
Q Consensus 79 ~~----~cp~L~~L~~~s~--~dl~~~~i~---~g~~~L~~L~c--~~ITD~sL~~La~~----Cp~L~~ 133 (250)
.. ..++|++|+...+ .+.....++ ..+++|+.|+. -.|+|.+...+... +++|+.
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence 33 3357777754432 121111121 23456666642 25777776666542 556666
No 14
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.92 E-value=2.6e-09 Score=97.59 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=31.2
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcC----CCCCeEecCCCCCcCHHHHHHHH---HhCCCCCEEecCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMC----KSLKAVDISCCDRITAAGVSEFL---LHCHSLETLRCGGSP 68 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C----~~L~~LdLS~C~~ITD~gl~~La---~~C~~L~~L~l~gC~ 68 (250)
++|++|+|++|.|+|.|+..++..+ ++|++|+|++|. +++.|...++ ..|++|++|++++|.
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 4555555655555555555555432 355555555553 5544433333 234555555555553
No 15
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.91 E-value=6.8e-09 Score=93.88 Aligned_cols=83 Identities=10% Similarity=0.090 Sum_probs=47.0
Q ss_pred CCcCEEEccCCCCCHHHHHHHH---hcCCCCCeEecCCCCCcCHHHHHHHHHhC------------CCCCEEecCCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVA---QMCKSLKAVDISCCDRITAAGVSEFLLHC------------HSLETLRCGGSPRS 70 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la---~~C~~L~~LdLS~C~~ITD~gl~~La~~C------------~~L~~L~l~gC~~~ 70 (250)
.+|++|+|++|.|++.|+..++ ..|++|++|+|++|. +++.|...++... ++|++|++++|..+
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 5666666666666666555443 346666666666663 6666665555433 66666666666554
Q ss_pred cHHHHHHHh---hhCCCCceecC
Q 025644 71 NHAARRCLG---ILKPKLNDVEG 90 (250)
Q Consensus 71 dd~al~~l~---~~cp~L~~L~~ 90 (250)
+... ..++ ..+++|++|+.
T Consensus 173 ~~~~-~~l~~~l~~~~~L~~L~L 194 (386)
T 2ca6_A 173 NGSM-KEWAKTFQSHRLLHTVKM 194 (386)
T ss_dssp GGGH-HHHHHHHHHCTTCCEEEC
T ss_pred cHHH-HHHHHHHHhCCCcCEEEC
Confidence 3322 2211 24556666543
No 16
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=9.1e-08 Score=79.56 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=66.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhc---CCCCCeEecCCCCCcCHHHHHHHHH---hCCCCCEEec--CCCCCCcHHHHHH
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQM---CKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRC--GGSPRSNHAARRC 77 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~---C~~L~~LdLS~C~~ITD~gl~~La~---~C~~L~~L~l--~gC~~~dd~al~~ 77 (250)
.+|++|+|++|.|+|.|...|+.. ++.|++|||++| +|+|.|+.+|+. .++.|++|++ +++...++. ...
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g-~~~ 142 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV-EME 142 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH-HHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH-HHH
Confidence 789999999999999999988865 688999999998 599999999985 4679999999 777766664 334
Q ss_pred Hhh---hCCCCceec
Q 025644 78 LGI---LKPKLNDVE 89 (250)
Q Consensus 78 l~~---~cp~L~~L~ 89 (250)
++. .++.|++|+
T Consensus 143 l~~~L~~n~~L~~L~ 157 (185)
T 1io0_A 143 IANMLEKNTTLLKFG 157 (185)
T ss_dssp HHHHHHHCSSCCEEE
T ss_pred HHHHHHhCCCcCEEe
Confidence 443 346666664
No 17
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.63 E-value=9.6e-08 Score=86.09 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=40.8
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhc----CCCCCeEecCCCCCcCHHHHHHHHHh---CC-CCCEEecCCCCCCc
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQM----CKSLKAVDISCCDRITAAGVSEFLLH---CH-SLETLRCGGSPRSN 71 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~----C~~L~~LdLS~C~~ITD~gl~~La~~---C~-~L~~L~l~gC~~~d 71 (250)
.+|+.|+|++|.|++.+...++.. +++|++|||++| ++++.|+..++.. .+ +|++|++++|..++
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 467777777776666666665544 456777777776 4666666665543 33 67777777775433
No 18
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.50 E-value=9.5e-08 Score=88.48 Aligned_cols=54 Identities=22% Similarity=0.155 Sum_probs=27.9
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHH-hCCCCCEEecC
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLL-HCHSLETLRCG 65 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~-~C~~L~~L~l~ 65 (250)
++|+.|+|+|| +++-.. + ..++|++|+|+.| ++++.++..|+. .+|+|++|+|+
T Consensus 172 P~L~~L~L~g~~~l~l~~---~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGK---K--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TTCCEEEEECCBTCBCCS---C--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCcEEEEeCCCCceecc---c--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEe
Confidence 45666666655 332111 1 2555666666544 356666655554 45666666553
No 19
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.46 E-value=2.3e-07 Score=83.62 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=31.7
Q ss_pred cCEEEccCCCCCHHHHHHHH---hcCC-CCCeEecCCCCCcCHHHHHHHHHh----CCCCCEEecCCCCC
Q 025644 8 WEILDISGSDVSDFGLVKVA---QMCK-SLKAVDISCCDRITAAGVSEFLLH----CHSLETLRCGGSPR 69 (250)
Q Consensus 8 L~~LnLsgC~ITD~gL~~la---~~C~-~L~~LdLS~C~~ITD~gl~~La~~----C~~L~~L~l~gC~~ 69 (250)
|++|||++|.|++.+...++ .+++ +|++|||++| +|++.+...++.. +++|++|++++|..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 55666666555555543333 2344 5666666655 4555554444443 35555555555543
No 20
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.34 E-value=5.1e-07 Score=70.89 Aligned_cols=122 Identities=14% Similarity=0.080 Sum_probs=78.9
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|++++|.|+|..+......+++|++|++++| ++++- ....++++|++|++++|..++. +..+...+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGG--LEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSC--THHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccch--HHHHhhhCCCC
Confidence 578999999998886555555567899999999998 46654 3345688999999999876652 12334458889
Q ss_pred ceecCCc--hhhhhhhccccccccccccccC--CCCHHHH--HHHHhcCCCcee
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSI--EMMSTECPRIIV 133 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL--~~La~~Cp~L~~ 133 (250)
++|+... +.++.....-.++++|+.|+.. .|++..- ......+|+|+.
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 8885433 2332221233567778887532 3443322 123457888876
No 21
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.31 E-value=3.9e-08 Score=78.85 Aligned_cols=122 Identities=10% Similarity=0.044 Sum_probs=79.8
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|+|+|..+......+++|++|+|++|. |++- ....++++|++|++++|..++. +..+...+|+|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGG--LDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSC--CCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchH--HHHHHhhCCCC
Confidence 6799999999988866565555778999999999986 7664 3445689999999999976552 12334468999
Q ss_pred ceecCCc--hhhhhhhccccccccccccccC--CCCHHHH--HHHHhcCCCcee
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSI--EMMSTECPRIIV 133 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL--~~La~~Cp~L~~ 133 (250)
++|+... +.++.....-.++++|+.|+.. .|++..- ......+|+|+.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 9985433 2222211222456777777532 2332211 224457778777
No 22
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.26 E-value=1.5e-06 Score=68.23 Aligned_cols=102 Identities=12% Similarity=0.107 Sum_probs=69.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|.|++. .....+++|++|+|++|. |++. +..+..++++|++|++++|..++-.... .-..+|+|
T Consensus 42 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~-~~~~l~~L 115 (149)
T 2je0_A 42 EELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNR-VSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIE-PLKKLENL 115 (149)
T ss_dssp TTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSC-CCSC-THHHHHHCTTCCEEECTTSCCCSHHHHG-GGGGCTTC
T ss_pred CCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCc-ccch-HHHHhhhCCCCCEEECCCCcCCChHHHH-HHhhCCCC
Confidence 6899999999977765 334568999999999985 6553 5667778999999999999877643222 23468899
Q ss_pred ceecCCc--hhhhhh--hcccccccccccccc
Q 025644 86 NDVEGDS--WEELVN--TDIGHGAQSLRWFVW 113 (250)
Q Consensus 86 ~~L~~~s--~~dl~~--~~i~~g~~~L~~L~c 113 (250)
++|+... +.++.. ...-.++++|+.|+.
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 9985543 222221 012345667777653
No 23
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.26 E-value=6.6e-06 Score=70.98 Aligned_cols=83 Identities=12% Similarity=0.121 Sum_probs=66.4
Q ss_pred CCCcCEEEccCC-CCCHHHHHHHHhc---CCCCCeEecCCCCCcCHHHHHHHHH---hCCCCCEEecCCCCCCcHHHHHH
Q 025644 5 DSSWEILDISGS-DVSDFGLVKVAQM---CKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRC 77 (250)
Q Consensus 5 d~~L~~LnLsgC-~ITD~gL~~la~~---C~~L~~LdLS~C~~ITD~gl~~La~---~C~~L~~L~l~gC~~~dd~al~~ 77 (250)
|..|+.|||+++ +|+|.|.++|++. -..|+.|+|++| +|+|.|..+|++ .-..|++|+|+++.+.++. ..+
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G-a~a 117 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPEL-LAR 117 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-HHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH-HHH
Confidence 588999999997 9999999999875 467999999999 599999999984 5688999999988777664 455
Q ss_pred HhhhC---CCCceec
Q 025644 78 LGILK---PKLNDVE 89 (250)
Q Consensus 78 l~~~c---p~L~~L~ 89 (250)
|+.-+ ..|+.|.
T Consensus 118 la~aL~~N~tL~~L~ 132 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFK 132 (197)
T ss_dssp HHHHTTTTCCCSEEE
T ss_pred HHHHHhhCCceeEEE
Confidence 55433 2355553
No 24
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.23 E-value=1.8e-06 Score=79.82 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=51.0
Q ss_pred CCcCEEEccCCCCCHHHHHHHHh--cCCCCCeEecCCCCCcCHHHHHHHH---HhCCCCCEEecCCCCCCcHHHHHHHhh
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQ--MCKSLKAVDISCCDRITAAGVSEFL---LHCHSLETLRCGGSPRSNHAARRCLGI 80 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~--~C~~L~~LdLS~C~~ITD~gl~~La---~~C~~L~~L~l~gC~~~dd~al~~l~~ 80 (250)
++|++|+|++|+|+|.+...++. .+|+|++||||++ +|+|.|..+|+ .++++|+.|++++|. +++.++.+|..
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~~ 329 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQK 329 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHHH
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHHH
Confidence 57777777777777777777765 4677788888765 57777777776 447778888877775 34445556655
No 25
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.19 E-value=7e-07 Score=73.73 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=76.0
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|.+++.. ...++++|++|+|++| ++++.+...+. ++++|++|++++|..++.. ...+ ..+++|
T Consensus 66 ~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~-~~~l-~~l~~L 138 (197)
T 4ezg_A 66 HNIKDLTINNIHATNYN---PISGLSNLERLRIMGK-DVTSDKIPNLS-GLTSLTLLDISHSAHDDSI-LTKI-NTLPKV 138 (197)
T ss_dssp TTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECT-TCBGGGSCCCT-TCTTCCEEECCSSBCBGGG-HHHH-TTCSSC
T ss_pred CCCCEEEccCCCCCcch---hhhcCCCCCEEEeECC-ccCcccChhhc-CCCCCCEEEecCCccCcHh-HHHH-hhCCCC
Confidence 57888999988666543 2345888999999987 47776666654 5888999999888776632 2233 357888
Q ss_pred ceecCCchhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 86 NDVEGDSWEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 86 ~~L~~~s~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
++|+......+.....-.++++|++|+.. .|++-. .-.++|+|+.
T Consensus 139 ~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~ 185 (197)
T 4ezg_A 139 NSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQ 185 (197)
T ss_dssp CEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCE
T ss_pred CEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH---HhccCCCCCE
Confidence 88855443212222223566777877532 455532 2346788777
No 26
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.09 E-value=1.6e-05 Score=68.51 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=67.1
Q ss_pred CCCcCEEEccCCCCCHHHHHHHHh---cCCCCCeEecCCCCCcCHHHHHHHHHhC---CCCCEEecCCC-C-CCcHHHHH
Q 025644 5 DSSWEILDISGSDVSDFGLVKVAQ---MCKSLKAVDISCCDRITAAGVSEFLLHC---HSLETLRCGGS-P-RSNHAARR 76 (250)
Q Consensus 5 d~~L~~LnLsgC~ITD~gL~~la~---~C~~L~~LdLS~C~~ITD~gl~~La~~C---~~L~~L~l~gC-~-~~dd~al~ 76 (250)
+..|+.|+|++|+|+|.|..+||+ .-..|++|||+++ +|+|.|+.+|++.. ..|+.|+++++ . .+++.+..
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 478999999999999999999985 4678999999998 59999999999765 57999999987 3 56665555
Q ss_pred HHhh---hCCCCceec
Q 025644 77 CLGI---LKPKLNDVE 89 (250)
Q Consensus 77 ~l~~---~cp~L~~L~ 89 (250)
.|+. .-+.|..|.
T Consensus 148 ~ia~aL~~N~tL~~L~ 163 (197)
T 1pgv_A 148 DMMMAIEENESLLRVG 163 (197)
T ss_dssp HHHHHHHHCSSCCEEE
T ss_pred HHHHHHHhCCCcCeEe
Confidence 5543 345666653
No 27
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.07 E-value=2.4e-06 Score=70.45 Aligned_cols=100 Identities=15% Similarity=0.036 Sum_probs=73.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC-CCcHHHHHHHhhhCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP-RSNHAARRCLGILKPK 84 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~-~~dd~al~~l~~~cp~ 84 (250)
.+|++|+|++|.|++.+...++ ++++|++|++++| ++++.+...+. ++++|++|++++|. ..+-. .-..+|+
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~----~l~~l~~ 160 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLS-GLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDIM----PLKTLPE 160 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCT-TCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG----GGGGCSS
T ss_pred CCCCEEEeECCccCcccChhhc-CCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCccccH----hhcCCCC
Confidence 7899999999999987776655 5999999999998 58887777775 69999999999997 54432 2346899
Q ss_pred CceecCCchhhhhhhcccccccccccccc
Q 025644 85 LNDVEGDSWEELVNTDIGHGAQSLRWFVW 113 (250)
Q Consensus 85 L~~L~~~s~~dl~~~~i~~g~~~L~~L~c 113 (250)
|+.|+.... .+.....-.++++|++|+.
T Consensus 161 L~~L~l~~n-~i~~~~~l~~l~~L~~L~l 188 (197)
T 4ezg_A 161 LKSLNIQFD-GVHDYRGIEDFPKLNQLYA 188 (197)
T ss_dssp CCEEECTTB-CCCCCTTGGGCSSCCEEEE
T ss_pred CCEEECCCC-CCcChHHhccCCCCCEEEe
Confidence 999865432 1221112245677888764
No 28
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.05 E-value=1.1e-06 Score=70.31 Aligned_cols=102 Identities=12% Similarity=0.030 Sum_probs=69.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|.|++. .....+++|++|+|++|. +++. +..+..++++|++|++++|..++-..... -..+|+|
T Consensus 49 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-l~~l~~L 122 (168)
T 2ell_A 49 VNLEFLSLINVGLISV---SNLPKLPKLKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECL 122 (168)
T ss_dssp GGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGG-GSSCSCC
T ss_pred CCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCCccCcchhHHH-HhcCCCC
Confidence 5799999999977765 334568999999999985 5553 56677789999999999997666321112 2357899
Q ss_pred ceecCCc--hhhhhh--hcccccccccccccc
Q 025644 86 NDVEGDS--WEELVN--TDIGHGAQSLRWFVW 113 (250)
Q Consensus 86 ~~L~~~s--~~dl~~--~~i~~g~~~L~~L~c 113 (250)
++|+... +.++.. ...-.++++|++|+.
T Consensus 123 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 123 KSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp CEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred CEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 9885543 222221 112356778888763
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.03 E-value=3.3e-06 Score=74.45 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=34.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
++|++|+|++|.|++..- ..++++|++|+|++| ++++- .. ..++++|++|++++|...+-.. -..+++|
T Consensus 66 ~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n-~i~~~--~~-~~~l~~L~~L~l~~n~i~~~~~----~~~l~~L 134 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTN-KITDI--SA-LQNLTNLRELYLNEDNISDISP----LANLTKM 134 (347)
T ss_dssp TTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCCC--GG-GTTCTTCSEEECTTSCCCCCGG----GTTCTTC
T ss_pred CCccEEEccCCccccchh---hhcCCcCCEEEccCC-cccCc--hH-HcCCCcCCEEECcCCcccCchh----hccCCce
Confidence 345555555554444322 335555555555555 34431 11 2345555555555554433221 2245555
Q ss_pred ceec
Q 025644 86 NDVE 89 (250)
Q Consensus 86 ~~L~ 89 (250)
+.|+
T Consensus 135 ~~L~ 138 (347)
T 4fmz_A 135 YSLN 138 (347)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 5553
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.90 E-value=1.2e-05 Score=70.92 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=39.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
++|+.|+|++|.+++..- ...+++|++|++++|. +++... ..++++|++|++++|..++... -..+++|
T Consensus 177 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L 245 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIGNNKITDLSP----LANLSQL 245 (347)
T ss_dssp TTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGG----GTTCTTC
T ss_pred CCCCEEEccCCccccccc---ccCCCccceeecccCC-CCCCch---hhcCCcCCEEEccCCccCCCcc----hhcCCCC
Confidence 467777777775554332 3456666666666653 333222 3456666666666665443321 2345566
Q ss_pred ceec
Q 025644 86 NDVE 89 (250)
Q Consensus 86 ~~L~ 89 (250)
+.|+
T Consensus 246 ~~L~ 249 (347)
T 4fmz_A 246 TWLE 249 (347)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6553
No 31
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.83 E-value=8.5e-06 Score=65.96 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=73.2
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|+|++ +..+...+++|++||+++| +|++- .-..++++|++|+++++..++-. ..+-..+|+|
T Consensus 19 ~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L 90 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNRICRIG--EGLDQALPDL 90 (176)
T ss_dssp TSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSCCCEEC--SCHHHHCTTC
T ss_pred CCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCcccccC--cchhhcCCCC
Confidence 578899999997764 3446666778999999998 46652 22346888999999988654321 0122468888
Q ss_pred ceecCCc--hhhhhhhccccccccccccccC-----CCCHHHHHHHHhcCCCceec
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP-----NIDKDSIEMMSTECPRIIVN 134 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~-----~ITD~sL~~La~~Cp~L~~~ 134 (250)
+.|+... +.++.....-.++++|+.|+.. .+.+.. ..+...+|+|+..
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~-~~~~~~l~~L~~L 145 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR-LYVIYKVPQVRVL 145 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHH-HHHHHHCTTCSEE
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHH-HHHHHHCCcccee
Confidence 8875433 2222221122356677777532 232222 2234578888883
No 32
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.80 E-value=5.7e-06 Score=66.99 Aligned_cols=77 Identities=13% Similarity=0.111 Sum_probs=37.4
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCc
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 86 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~ 86 (250)
+|++|+|++|.|++. .--.++++|++|||++|. |++-. ..+..++++|++|+++++...+-..+..+ ..+|+|+
T Consensus 43 ~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~l-~~l~~L~ 116 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR-ICRIG-EGLDQALPDLTELILTNNSLVELGDLDPL-ASLKSLT 116 (176)
T ss_dssp CCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC-CCEEC-SCHHHHCTTCCEEECCSCCCCCGGGGGGG-GGCTTCC
T ss_pred CCCEEECCCCCCCcc---cccccCCCCCEEECCCCc-ccccC-cchhhcCCCCCEEECCCCcCCcchhhHhh-hcCCCCC
Confidence 566666666655542 112345666666666653 44211 11234566666666666654332211111 2456666
Q ss_pred eec
Q 025644 87 DVE 89 (250)
Q Consensus 87 ~L~ 89 (250)
.|.
T Consensus 117 ~L~ 119 (176)
T 1a9n_A 117 YLC 119 (176)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 33
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.78 E-value=2.1e-05 Score=69.28 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=32.5
Q ss_pred CCcCEEEccCCCCCHH--HHHHHHhc-CCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCc
Q 025644 6 SSWEILDISGSDVSDF--GLVKVAQM-CKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSN 71 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~--gL~~la~~-C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~d 71 (250)
.+|++|+|++|+|++. .+..+... +++|++|+|+++. |+...-..+ .++++|++|+++++..++
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV-RVFPALSTLDLSDNPELG 187 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC-CCCSSCCEEECCSCTTCH
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh-ccCCCCCEEECCCCCcCc
Confidence 5677788887755543 23233221 3566666666653 332211111 245566666666665443
No 34
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.61 E-value=8.1e-06 Score=80.97 Aligned_cols=30 Identities=10% Similarity=0.269 Sum_probs=17.8
Q ss_pred cccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 103 HGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 103 ~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
.++.+|++|+.. .|++..-..+ .+|++|+.
T Consensus 220 ~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~ 251 (768)
T 3rgz_A 220 GDCSALQHLDISGNKLSGDFSRAI-STCTELKL 251 (768)
T ss_dssp TTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCE
T ss_pred ccCCCCCEEECcCCcCCCcccHHH-hcCCCCCE
Confidence 355677777532 4664444444 37888887
No 35
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.58 E-value=2.9e-05 Score=68.16 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=61.7
Q ss_pred CCcCEEEccCCCCCHH----HHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHh--
Q 025644 6 SSWEILDISGSDVSDF----GLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLG-- 79 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~----gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~-- 79 (250)
.+|++|+|++|.|++. +...+. .+++|++|+|++|. |+...-.. ..++++|++|+++++..+++..+..-.
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAH-SPAFSCEQ-VRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCS-SCCCCTTS-CCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred CCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCC-cchhhHHH-hccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 6788899999877752 223334 78888888888874 43321111 136788888888888766654332211
Q ss_pred hhCCCCceecCCc--hhhhhhh--cccccccccccccc
Q 025644 80 ILKPKLNDVEGDS--WEELVNT--DIGHGAQSLRWFVW 113 (250)
Q Consensus 80 ~~cp~L~~L~~~s--~~dl~~~--~i~~g~~~L~~L~c 113 (250)
..+|+|++|+... ++.+... .+..++.+|+.|+.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~L 231 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL 231 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEEC
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEEC
Confidence 3577888875433 2211111 11245567777753
No 36
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.53 E-value=4.5e-05 Score=67.39 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=22.7
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 68 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~ 68 (250)
+|+.|++++|+|++.. . ...+++|++|+|++| +|++-.- ..++++|++|++++|.
T Consensus 42 ~L~~L~l~~~~i~~l~--~-~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE--G-VQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP 96 (308)
T ss_dssp TCCEEECTTSCCCCCT--T-GGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC
T ss_pred CcCEEEeeCCCccCch--h-hhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc
Confidence 4455555555333311 1 123445555555544 2332211 2344444444444443
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.45 E-value=8.4e-05 Score=69.14 Aligned_cols=61 Identities=15% Similarity=0.020 Sum_probs=33.0
Q ss_pred hcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCceecC
Q 025644 28 QMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEG 90 (250)
Q Consensus 28 ~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~~L~~ 90 (250)
..+++|++|||++|. +++.....+ .++++|++|++++|...+-..+-..-..+++|++|+.
T Consensus 321 ~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-LTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred hhCCcccEEEeECCc-cChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 456677777777763 554322222 4566777777777765542222222234666666643
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.40 E-value=0.00024 Score=65.79 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=13.3
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC 41 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C 41 (250)
+|++|++++|.+++..- ...+++|++|+|++|
T Consensus 200 ~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 200 NLESLIATNNQISDITP---LGILTNLDELSLNGN 231 (466)
T ss_dssp TCSEEECCSSCCCCCGG---GGGCTTCCEEECCSS
T ss_pred CCCEEEecCCccccccc---ccccCCCCEEECCCC
Confidence 44555555543332211 123444444444444
No 39
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.39 E-value=0.00012 Score=64.34 Aligned_cols=111 Identities=18% Similarity=0.188 Sum_probs=75.1
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|.|++. .. ...+++|++|+|++|. |++- .. ..++++|++|++++|..++-. .-..+++|
T Consensus 90 ~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~-i~~~--~~-l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L 158 (291)
T 1h6t_A 90 KNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHNG-ISDI--NG-LVHLPQLESLYLGNNKITDIT----VLSRLTKL 158 (291)
T ss_dssp TTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTSC-CCCC--GG-GGGCTTCCEEECCSSCCCCCG----GGGGCTTC
T ss_pred CCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCCc-CCCC--hh-hcCCCCCCEEEccCCcCCcch----hhccCCCC
Confidence 6799999999977763 22 4578999999999984 6652 22 347899999999999765532 23458899
Q ss_pred ceecCCc--hhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
+.|+... +.++.. -.++++|+.|+.. .|++- .. ..++++|+.
T Consensus 159 ~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~ 204 (291)
T 1h6t_A 159 DTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDV 204 (291)
T ss_dssp SEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSE
T ss_pred CEEEccCCccccchh---hcCCCccCEEECCCCcCCCC--hh-hccCCCCCE
Confidence 9985543 222221 3567788888643 45553 22 347788877
No 40
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.36 E-value=0.00016 Score=63.52 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=25.2
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~ 69 (250)
.+|+.|+|++|+|++..- ..++++|++|+|++|. +++ +.. ..++++|++|++++|..
T Consensus 68 ~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~L~~L~L~~n~i 124 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENK-VKD--LSS-LKDLKKLKSLSLEHNGI 124 (291)
T ss_dssp TTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCC--GGG-GTTCTTCCEEECTTSCC
T ss_pred CCCCEEEccCCccCCCcc---cccCCCCCEEECCCCc-CCC--Chh-hccCCCCCEEECCCCcC
Confidence 344555555554333221 2345555555555542 333 111 23455555555555543
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.35 E-value=3.2e-05 Score=70.47 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=6.3
Q ss_pred CcCEEEccCCCCC
Q 025644 7 SWEILDISGSDVS 19 (250)
Q Consensus 7 ~L~~LnLsgC~IT 19 (250)
+|++|+|++|.|+
T Consensus 31 ~l~~L~Ls~n~i~ 43 (455)
T 3v47_A 31 HVNYVDLSLNSIA 43 (455)
T ss_dssp TCCEEECCSSCCC
T ss_pred ccCEEEecCCccC
Confidence 4455555555443
No 42
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.35 E-value=0.00017 Score=66.82 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=42.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
++|+.|+|++|.+++..- ..++++|++|++++|. +++..- ..++++|+.|++++|...+-.. -..+|+|
T Consensus 243 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L 311 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQ-ISNISP---LAGLTALTNLELNENQLEDISP----ISNLKNL 311 (466)
T ss_dssp TTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSCCSCCGG----GGGCTTC
T ss_pred CCCCEEECCCCccccchh---hhcCCCCCEEECCCCc-cCcccc---ccCCCccCeEEcCCCcccCchh----hcCCCCC
Confidence 567777777775544322 3467777777777763 443221 3456777777777765444321 2346666
Q ss_pred ceecC
Q 025644 86 NDVEG 90 (250)
Q Consensus 86 ~~L~~ 90 (250)
+.|+.
T Consensus 312 ~~L~L 316 (466)
T 1o6v_A 312 TYLTL 316 (466)
T ss_dssp SEEEC
T ss_pred CEEEC
Confidence 66643
No 43
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.34 E-value=2.9e-05 Score=68.52 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=35.1
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS 70 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~ 70 (250)
++|+.|+|++|.|++..-..+ .++++|++|||++| ++++.....+..++++|++|++++|..+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCT-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCEEECCCCCCCCccchhh-hccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 356666666665554221111 24566666666665 3555545555555666666666666543
No 44
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.33 E-value=1e-05 Score=66.64 Aligned_cols=119 Identities=9% Similarity=0.024 Sum_probs=74.9
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|.|++. . ...++++|++|++++| +|+ .+..+...+++|++|++++|..++-. .+ ..+++|
T Consensus 48 ~~L~~L~ls~n~l~~l--~-~~~~l~~L~~L~l~~n-~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~---~~-~~l~~L 117 (198)
T 1ds9_A 48 KACKHLALSTNNIEKI--S-SLSGMENLRILSLGRN-LIK--KIENLDAVADTLEELWISYNQIASLS---GI-EKLVNL 117 (198)
T ss_dssp TTCSEEECSEEEESCC--C-CHHHHTTCCEEEEEEE-EEC--SCSSHHHHHHHCSEEEEEEEECCCHH---HH-HHHHHS
T ss_pred CCCCEEECCCCCCccc--c-ccccCCCCCEEECCCC-Ccc--cccchhhcCCcCCEEECcCCcCCcCC---cc-ccCCCC
Confidence 5789999999866652 2 3346889999999998 466 35556677889999999998766643 22 246778
Q ss_pred ceecCCc--hhhhhhhccccccccccccccC--CCCH---------HHHHHHHhcCCCceec
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDK---------DSIEMMSTECPRIIVN 134 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD---------~sL~~La~~Cp~L~~~ 134 (250)
+.|+... +.++.....-.++++|+.|+.. .+++ .-...+...+|+|+..
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 8874432 2222221122456777777532 2222 2223445689999884
No 45
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.32 E-value=0.00015 Score=64.07 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=76.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|.|++.. . ..++++|++|+|++|. +++-.- ..++++|++|++++|...+-.. -..+++|
T Consensus 107 ~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L 175 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQ-ITNISP---LAGLTNLQYLSIGNAQVSDLTP----LANLSKL 175 (308)
T ss_dssp TTCCEEECTTSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGG----GTTCTTC
T ss_pred CCCCEEECCCCCCCCch--h-hcCCCCCCEEECCCCc-cCcCcc---ccCCCCccEEEccCCcCCCChh----hcCCCCC
Confidence 68999999999777632 2 4679999999999994 554322 5589999999999997665432 3468899
Q ss_pred ceecCCc--hhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
+.|+... +.++.. -.++++|+.|+.. .|++.. . -.++|+|+.
T Consensus 176 ~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~ 221 (308)
T 1h6u_A 176 TTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS--P-LANTSNLFI 221 (308)
T ss_dssp CEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG--G-GTTCTTCCE
T ss_pred CEEECCCCccCcChh---hcCCCCCCEEEccCCccCccc--c-ccCCCCCCE
Confidence 9985433 222221 2566788887642 444433 2 358888887
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.31 E-value=8.7e-06 Score=70.79 Aligned_cols=80 Identities=15% Similarity=0.069 Sum_probs=46.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHH-HHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGV-SEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 84 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl-~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~ 84 (250)
++|++|+|++|+|++..- .+-.++++|++|+|+++. |+..|. ..-..++++|++|+++++....-. .--..+++
T Consensus 28 ~~l~~L~L~~n~l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~---~~~~~l~~ 102 (306)
T 2z66_A 28 SSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMS---SNFLGLEQ 102 (306)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCSEEEEE---EEEETCTT
T ss_pred CCCCEEECCCCccCccCH-hHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCccccCh---hhcCCCCC
Confidence 578888888886663221 122467888888888873 553321 111225788888888887543211 00124677
Q ss_pred CceecC
Q 025644 85 LNDVEG 90 (250)
Q Consensus 85 L~~L~~ 90 (250)
|++|+.
T Consensus 103 L~~L~l 108 (306)
T 2z66_A 103 LEHLDF 108 (306)
T ss_dssp CCEEEC
T ss_pred CCEEEC
Confidence 777643
No 47
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.31 E-value=6.6e-05 Score=61.77 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=48.0
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|.|++ +..+...+++|++|+|++| +|++ +.. ..++++|++|+++++...+-..+..+. .+++|
T Consensus 70 ~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~-~l~~L 142 (198)
T 1ds9_A 70 ENLRILSLGRNLIKK--IENLDAVADTLEELWISYN-QIAS--LSG-IEKLVNLRVLYMSNNKITNWGEIDKLA-ALDKL 142 (198)
T ss_dssp TTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHH-HHHHHHSSEEEESEEECCCHHHHHHHT-TTTTC
T ss_pred CCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC-cCCc--CCc-cccCCCCCEEECCCCcCCchhHHHHHh-cCCCC
Confidence 567788888875552 3334445677888888877 4554 333 335677888888777666543322332 46777
Q ss_pred ceecCC
Q 025644 86 NDVEGD 91 (250)
Q Consensus 86 ~~L~~~ 91 (250)
++|+..
T Consensus 143 ~~L~l~ 148 (198)
T 1ds9_A 143 EDLLLA 148 (198)
T ss_dssp SEEEEC
T ss_pred CEEEec
Confidence 776443
No 48
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.29 E-value=0.0002 Score=64.07 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=37.2
Q ss_pred CcCEEEccCCCCCHH-HHHHHHhcCCCCCeEecCCCCCcCHH-HHHHHHHhCCCCCEEecCCCCCCc-----HHHHHHHh
Q 025644 7 SWEILDISGSDVSDF-GLVKVAQMCKSLKAVDISCCDRITAA-GVSEFLLHCHSLETLRCGGSPRSN-----HAARRCLG 79 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~-gL~~la~~C~~L~~LdLS~C~~ITD~-gl~~La~~C~~L~~L~l~gC~~~d-----d~al~~l~ 79 (250)
+|+.|||+++.|++- ++..+...+++|++||||+. +|++- .+..+. +. +|++|++.|.+..+ ...+..+-
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEccCCcCccccCcchhHHHHHH
Confidence 455666666544431 23333445566666666554 24332 222222 12 55666666555442 12233344
Q ss_pred hhCCCCceec
Q 025644 80 ILKPKLNDVE 89 (250)
Q Consensus 80 ~~cp~L~~L~ 89 (250)
..+|+|+.|+
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 4555555553
No 49
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.29 E-value=6.5e-05 Score=65.14 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=45.9
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|++++|+|++.. . ...+++|++|+|++| +|++-.- ..++++|++|+++++...+-. .+.. ++|
T Consensus 41 ~~L~~L~l~~n~i~~l~--~-l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N~l~~l~---~~~~--~~L 108 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA--G-MQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRNRLKNLN---GIPS--ACL 108 (263)
T ss_dssp TTCSEEECTTSCCCCCT--T-GGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSSCCSCCT---TCCC--SSC
T ss_pred CcCcEEECcCCCcccch--H-HhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCCccCCcC---cccc--Ccc
Confidence 57888888888666533 2 346788888888887 3554332 457788888888888654422 1122 666
Q ss_pred ceec
Q 025644 86 NDVE 89 (250)
Q Consensus 86 ~~L~ 89 (250)
+.|+
T Consensus 109 ~~L~ 112 (263)
T 1xeu_A 109 SRLF 112 (263)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 6663
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.27 E-value=0.00015 Score=63.65 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=14.8
Q ss_pred ccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 104 GAQSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 104 g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
++.+|+.|+.. .|++.....+ .++++|+.
T Consensus 214 ~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~ 244 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISAVDNGSL-ANTPHLRE 244 (330)
T ss_dssp TCTTCCEEECCSSCCCEECTTTG-GGSTTCCE
T ss_pred CCCCCCEEECCCCcCceeChhhc-cCCCCCCE
Confidence 45667776532 3443222222 35777777
No 51
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.25 E-value=0.00034 Score=65.06 Aligned_cols=121 Identities=15% Similarity=0.091 Sum_probs=75.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCH-HHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITA-AGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 84 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD-~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~ 84 (250)
++|++|+|++|.|++.....+ ..+++|++|+|++|. +++ ..+.....++++|++|++++|...+.... ..-..+++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-~~~~~l~~ 400 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-GDCSWTKS 400 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-CSCCCCTT
T ss_pred CcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCccccc-chhccCcc
Confidence 689999999998887444333 579999999999995 665 34445567899999999999976552100 01234688
Q ss_pred CceecCCchhhhhhhcccccc-ccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 85 LNDVEGDSWEELVNTDIGHGA-QSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 85 L~~L~~~s~~dl~~~~i~~g~-~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
|+.|+..... +.. .+..+. ++|+.|+.. +|+ ++..-..++++|+.
T Consensus 401 L~~L~Ls~N~-l~~-~~~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~ 448 (520)
T 2z7x_B 401 LLSLNMSSNI-LTD-TIFRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQE 448 (520)
T ss_dssp CCEEECCSSC-CCG-GGGGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCE
T ss_pred CCEEECcCCC-CCc-chhhhhcccCCEEECCCCccc--ccchhhhcCCCCCE
Confidence 8887544321 110 111222 577777532 344 22221227788877
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.24 E-value=3.6e-05 Score=68.74 Aligned_cols=120 Identities=17% Similarity=0.111 Sum_probs=67.6
Q ss_pred CCcCEEEccCCCCCHHHHHHHH--------hcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHH
Q 025644 6 SSWEILDISGSDVSDFGLVKVA--------QMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRC 77 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la--------~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~ 77 (250)
.+|++|+|++|+++...-..+. .++++|++|+|++|. ++ .+..-..++++|++|++++|..+.-. ..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~--~lp~~l~~l~~L~~L~L~~N~l~~l~--~~ 224 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR--SLPASIANLQNLKSLKIRNSPLSALG--PA 224 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC--CCCGGGGGCTTCCEEEEESSCCCCCC--GG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC--cchHhhcCCCCCCEEEccCCCCCcCc--hh
Confidence 6789999998732211111111 248889999999884 55 23223467889999999988654321 01
Q ss_pred HhhhCCCCceecCCchhhhhhhc-cccccccccccc---cCCCCHHHHHHHHhcCCCcee
Q 025644 78 LGILKPKLNDVEGDSWEELVNTD-IGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 78 l~~~cp~L~~L~~~s~~dl~~~~-i~~g~~~L~~L~---c~~ITD~sL~~La~~Cp~L~~ 133 (250)
-..+++|+.|+.....-..... .-.++.+|+.|+ |..++.-. .. -.++++|+.
T Consensus 225 -l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~-~~~l~~L~~ 281 (328)
T 4fcg_A 225 -IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LD-IHRLTQLEK 281 (328)
T ss_dssp -GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TT-GGGCTTCCE
T ss_pred -hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hh-hhcCCCCCE
Confidence 2357888888654432222111 124566777775 33222110 11 247788887
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.24 E-value=0.00083 Score=62.59 Aligned_cols=83 Identities=16% Similarity=0.033 Sum_probs=46.2
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHH--HHhCCCCCEEecCCCCCCcHHHHHHHhhhCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEF--LLHCHSLETLRCGGSPRSNHAARRCLGILKP 83 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~L--a~~C~~L~~L~l~gC~~~dd~al~~l~~~cp 83 (250)
.+|+.|+|++|.|+... ..+..++++|++|||++|. +++...... ...+++|++|++++|..++-......-..++
T Consensus 310 ~~L~~L~l~~n~l~~ip-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 310 EKVKRITVENSKVFLVP-CSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp TTCCEEEEESSCCCCCC-HHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred ccceEEEeccCccccCC-HHHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 35666666666444221 1233467777777777763 666544332 2456777777777776654321112234567
Q ss_pred CCceecC
Q 025644 84 KLNDVEG 90 (250)
Q Consensus 84 ~L~~L~~ 90 (250)
+|++|+.
T Consensus 388 ~L~~L~L 394 (549)
T 2z81_A 388 NLTSLDI 394 (549)
T ss_dssp TCCEEEC
T ss_pred CCCEEEC
Confidence 7777643
No 54
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.23 E-value=0.00014 Score=71.26 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=26.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~ 69 (250)
++|+.|+|++|.|++..- ...+++|++|+|++|. +++ +.. ..++++|+.|++++|..
T Consensus 65 ~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~--l~~-l~~l~~L~~L~Ls~N~l 121 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENK-IKD--LSS-LKDLKKLKSLSLEHNGI 121 (605)
T ss_dssp TTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSC-CCC--CTT-STTCTTCCEEECTTSCC
T ss_pred CCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCC-CCC--Chh-hccCCCCCEEEecCCCC
Confidence 455666666654443221 2345555555555552 332 111 23355555555555543
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.21 E-value=3.3e-05 Score=66.56 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=33.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 68 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~ 68 (250)
.+|+.|+|+++.|++..-..+ ..+++|++|+|+++ ++++..-..+ .++++|++|+++++.
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASF-RACRNLTILWLHSN-VLARIDAAAF-TGLALLEQLDLSDNA 91 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSCT
T ss_pred CCceEEEeeCCcCCccCHHHc-ccCCCCCEEECCCC-ccceeCHhhc-CCccCCCEEeCCCCC
Confidence 467777777775555332222 35667777777766 3443222222 346677777777664
No 56
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.21 E-value=0.00021 Score=61.59 Aligned_cols=117 Identities=10% Similarity=0.047 Sum_probs=63.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|++++|.|++.. . ...+++|++|+|++|. +++ +. -..++++|++|++++|...+-. ...-..+++|
T Consensus 41 ~~L~~L~l~~~~i~~~~--~-l~~l~~L~~L~l~~n~-l~~--~~-~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L 111 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ--G-IQYLPNVRYLALGGNK-LHD--IS-ALKELTNLTYLILTGNQLQSLP--NGVFDKLTNL 111 (272)
T ss_dssp TTCCEEECTTSCCCCCT--T-GGGCTTCCEEECTTSC-CCC--CG-GGTTCTTCCEEECTTSCCCCCC--TTTTTTCTTC
T ss_pred cceeeeeeCCCCccccc--c-cccCCCCcEEECCCCC-CCC--ch-hhcCCCCCCEEECCCCccCccC--hhHhcCCcCC
Confidence 57888888888665432 1 2458888888888874 554 22 2346788888888888544321 0112356777
Q ss_pred ceecCCchhhhhhhc--cccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 86 NDVEGDSWEELVNTD--IGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 86 ~~L~~~s~~dl~~~~--i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
++|+.... .+.... .-.++.+|++|+.. +|+...-.. -.++++|+.
T Consensus 112 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~ 161 (272)
T 3rfs_A 112 KELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV-FDKLTNLTE 161 (272)
T ss_dssp CEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCE
T ss_pred CEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCccCHHH-hccCccCCE
Confidence 77744321 111111 11355667776532 333211111 135677776
No 57
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.18 E-value=0.00012 Score=63.45 Aligned_cols=110 Identities=12% Similarity=0.053 Sum_probs=73.2
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|+|++..- ..++++|++|+|++|. +++ +..+.. ++|++|++++|..++-. . -..+++|
T Consensus 63 ~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~-l~~--l~~~~~--~~L~~L~L~~N~l~~~~---~-l~~l~~L 130 (263)
T 1xeu_A 63 TNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNR-LKN--LNGIPS--ACLSRLFLDNNELRDTD---S-LIHLKNL 130 (263)
T ss_dssp TTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSC-CSC--CTTCCC--SSCCEEECCSSCCSBSG---G-GTTCTTC
T ss_pred CCCCEEECCCCccCCChh---hccCCCCCEEECCCCc-cCC--cCcccc--CcccEEEccCCccCCCh---h-hcCcccc
Confidence 689999999997776543 5679999999999984 554 222222 89999999999766532 1 2358889
Q ss_pred ceecCCc--hhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
+.|+... ++++. .-.++.+|+.|+.. .|++. ..-.++++|+.
T Consensus 131 ~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~ 176 (263)
T 1xeu_A 131 EILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNW 176 (263)
T ss_dssp CEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCE
T ss_pred cEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch---HHhccCCCCCE
Confidence 9885433 22222 22456778887642 45554 22346777776
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.18 E-value=4.1e-05 Score=65.97 Aligned_cols=122 Identities=11% Similarity=-0.007 Sum_probs=75.8
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|.|++..-..+ .++++|++|+|++|..+++-.... ..++++|++|++++|..++.. ...-..+++|
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L 131 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLHTLHLDRCGLQELG--PGLFRGLAAL 131 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSCTTCCCCCTTT-TTTCTTCCEEECTTSCCCCCC--TTTTTTCTTC
T ss_pred CCCCEEECCCCccceeCHhhc-CCccCCCEEeCCCCCCccccCHHH-hcCCcCCCEEECCCCcCCEEC--HhHhhCCcCC
Confidence 689999999997776433333 468999999999997566543222 246899999999999654421 0112357889
Q ss_pred ceecCCc--hhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
++|+... +..+... .-.++.+|+.|+.. +|++-.-..+ .++++|+.
T Consensus 132 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~ 181 (285)
T 1ozn_A 132 QYLYLQDNALQALPDD-TFRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDR 181 (285)
T ss_dssp CEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCE
T ss_pred CEEECCCCcccccCHh-HhccCCCccEEECCCCcccccCHHHh-cCccccCE
Confidence 8885433 2221111 11456778887643 3443222222 25778877
No 59
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.16 E-value=0.00026 Score=69.39 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=71.8
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|.|++. . -...+++|++|+|++|. |++ +.. ..+|++|+.|+|++|..++-. .-..+++|
T Consensus 87 ~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~-l~~--l~~-l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L 155 (605)
T 1m9s_A 87 KNLGWLFLDENKIKDL--S-SLKDLKKLKSLSLEHNG-ISD--ING-LVHLPQLESLYLGNNKITDIT----VLSRLTKL 155 (605)
T ss_dssp TTCCEEECCSSCCCCC--T-TSTTCTTCCEEECTTSC-CCC--CGG-GGGCTTCSEEECCSSCCCCCG----GGGSCTTC
T ss_pred CCCCEEECcCCCCCCC--h-hhccCCCCCEEEecCCC-CCC--Ccc-ccCCCccCEEECCCCccCCch----hhcccCCC
Confidence 6789999999976652 2 23468899999999985 554 222 457899999999999765532 22357888
Q ss_pred ceecCCc--hhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
+.|+... +.++.. -.++++|+.|+.. .|++- .. ..+|++|+.
T Consensus 156 ~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l--~~-l~~l~~L~~ 201 (605)
T 1m9s_A 156 DTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDV 201 (605)
T ss_dssp SEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSE
T ss_pred CEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC--hH-HccCCCCCE
Confidence 8885443 222211 3566778887643 45552 22 346788877
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.16 E-value=2.6e-05 Score=66.91 Aligned_cols=80 Identities=21% Similarity=0.157 Sum_probs=50.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|+|++.+-..+ .++++|++|+|++| +|+.-.-.. ..++++|++|+++++...+-.. ..-..+++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGNPIQSLAL--GAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTT-TTCTTCSEEECTTC-CCCEECTTT-TTTCTTCCEEECTTCCCCEECT--TTTTTCTTC
T ss_pred CCccEEECCCCcccccCHhHh-ccccCCcEEECCCC-cCCccCHHH-ccCCcCCCEEECCCCccCccCh--hhhcCCccc
Confidence 568899999887776544333 35888999999988 455322212 2467888888888886543210 011346777
Q ss_pred ceecC
Q 025644 86 NDVEG 90 (250)
Q Consensus 86 ~~L~~ 90 (250)
++|+.
T Consensus 103 ~~L~l 107 (276)
T 2z62_A 103 QKLVA 107 (276)
T ss_dssp CEEEC
T ss_pred cEEEC
Confidence 77643
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.11 E-value=8.8e-05 Score=66.21 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=64.2
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|+|+ .+-.-...+++|++|+|++|. ++ ++..-..++++|++|++++|..++.. -..-..+++|
T Consensus 183 ~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~-l~--~l~~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L 255 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSP-LS--ALGPAIHHLPKLEELDLRGCTALRNY--PPIFGGRAPL 255 (328)
T ss_dssp TTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSC-CC--CCCGGGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCC
T ss_pred CCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCC-CC--cCchhhccCCCCCEEECcCCcchhhh--HHHhcCCCCC
Confidence 68999999999766 222234578999999999985 55 23223567899999999999654431 0112357888
Q ss_pred ceecCCchhhhhhhc-cccccccccccc
Q 025644 86 NDVEGDSWEELVNTD-IGHGAQSLRWFV 112 (250)
Q Consensus 86 ~~L~~~s~~dl~~~~-i~~g~~~L~~L~ 112 (250)
++|+...+.-+.... .-.++.+|+.|+
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 888655432222111 114567777775
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.07 E-value=7.5e-05 Score=69.85 Aligned_cols=79 Identities=22% Similarity=0.148 Sum_probs=43.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.++++|||++++||.-.-..+ .++++|++|||++|. |+.-.- ..-.++++|++|+++++....-. ...-..+++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f-~~l~~L~~L~Ls~N~-i~~i~~-~~f~~L~~L~~L~Ls~N~l~~l~--~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCE-IQTIED-GAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTCCCCEEC--GGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCHHHH-hCCCCCCEEECCCCc-CCCcCh-hHhcCCCCCCEEEccCCcCCCCC--HHHhcCCCCC
Confidence 467888888876553221112 357788888888873 432100 01245777888888777543211 0011346677
Q ss_pred ceec
Q 025644 86 NDVE 89 (250)
Q Consensus 86 ~~L~ 89 (250)
++|+
T Consensus 127 ~~L~ 130 (635)
T 4g8a_A 127 QKLV 130 (635)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7764
No 63
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.05 E-value=0.00062 Score=59.59 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=59.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHH--HhCCCCCEEecCCCCCCcHHH-HHHHhhhC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFL--LHCHSLETLRCGGSPRSNHAA-RRCLGILK 82 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La--~~C~~L~~L~l~gC~~~dd~a-l~~l~~~c 82 (250)
++|++|+|++|.|+...-..+ .++++|++||||+|.-.++.++..-. .++++|++|++++|..+.-.. ...+...+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQV-RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSC-CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHh-ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 589999999997654332222 36899999999999766666665433 578999999999997764332 22244578
Q ss_pred CCCceecC
Q 025644 83 PKLNDVEG 90 (250)
Q Consensus 83 p~L~~L~~ 90 (250)
++|++|+.
T Consensus 224 ~~L~~L~L 231 (310)
T 4glp_A 224 VQPHSLDL 231 (310)
T ss_dssp CCCSSEEC
T ss_pred CCCCEEEC
Confidence 89998854
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.04 E-value=4.7e-05 Score=66.14 Aligned_cols=102 Identities=12% Similarity=-0.018 Sum_probs=56.8
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|.++...-. ...++++|++|+|++|. +++..+.....++++|++|++++|...+... ..-..+++|
T Consensus 126 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L 201 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSL 201 (306)
T ss_dssp TTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECT--TTTTTCTTC
T ss_pred cCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCCCcCCcCH--HHhcCCCCC
Confidence 5788888888855432211 22457888888888873 5543333344567888888888886544210 011346777
Q ss_pred ceecCCc--hhhhhhhccccccccccccc
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFV 112 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~ 112 (250)
+.|+... +.++....+ .++.+|+.|+
T Consensus 202 ~~L~L~~N~l~~~~~~~~-~~l~~L~~L~ 229 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPY-KCLNSLQVLD 229 (306)
T ss_dssp CEEECTTSCCSBCCSGGG-TTCTTCCEEE
T ss_pred CEEECCCCccCccChhhc-cCcccCCEeE
Confidence 7764432 122111111 3456666665
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.03 E-value=3.1e-05 Score=72.28 Aligned_cols=39 Identities=23% Similarity=0.129 Sum_probs=17.3
Q ss_pred cCCCCCeEecCCCCCcCHHH-HHHHHHhCCCCCEEecCCCC
Q 025644 29 MCKSLKAVDISCCDRITAAG-VSEFLLHCHSLETLRCGGSP 68 (250)
Q Consensus 29 ~C~~L~~LdLS~C~~ITD~g-l~~La~~C~~L~~L~l~gC~ 68 (250)
.+++|++|+|++|. ++..+ +.....++++|++|++++|.
T Consensus 345 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~ 384 (570)
T 2z63_A 345 DLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG 384 (570)
T ss_dssp BCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS
T ss_pred cCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc
Confidence 45555555555553 33211 01112345555555555553
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.02 E-value=6.2e-05 Score=66.36 Aligned_cols=78 Identities=13% Similarity=0.004 Sum_probs=40.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|++++|.|++.. ...+++|++|++++|. +++-.-..+ .++++|++|+++++...+.. ...+...+++|
T Consensus 99 ~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L 171 (317)
T 3o53_A 99 PSIETLHAANNNISRVS----CSRGQGKKNIYLANNK-ITMLRDLDE-GCRSRVQYLDLKLNEIDTVN-FAELAASSDTL 171 (317)
T ss_dssp TTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSC-CCSGGGBCT-GGGSSEEEEECTTSCCCEEE-GGGGGGGTTTC
T ss_pred CCcCEEECCCCccCCcC----ccccCCCCEEECCCCC-CCCccchhh-hccCCCCEEECCCCCCCccc-HHHHhhccCcC
Confidence 45666666666554432 2245667777777763 443211111 34667777777777544321 11233345666
Q ss_pred ceecC
Q 025644 86 NDVEG 90 (250)
Q Consensus 86 ~~L~~ 90 (250)
++|+.
T Consensus 172 ~~L~L 176 (317)
T 3o53_A 172 EHLNL 176 (317)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 66643
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.99 E-value=0.00011 Score=69.40 Aligned_cols=64 Identities=9% Similarity=0.080 Sum_probs=35.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCc
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSN 71 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~d 71 (250)
++|+.|+|++|.|++..-..+ .++++|++|||+++ ++++.....+..++++|++|++++|..++
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 456666666665554321111 24566666666665 35554445555556666666666665443
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=96.94 E-value=0.00018 Score=64.02 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=26.2
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 68 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~ 68 (250)
+|++|+|++|+|++..-..+ .++++|++|+|++| +|++..-.. ..++++|++|+++++.
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDL-QRCVNLQALVLTSN-GINTIEEDS-FSSLGSLEHLDLSYNY 111 (353)
T ss_dssp TCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC
T ss_pred cCcEEECCCCcCcccCHHHh-ccCCCCCEEECCCC-ccCccCHhh-cCCCCCCCEEECCCCc
Confidence 55555665554443222111 24555555555555 243311111 1234555555555553
No 69
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=96.93 E-value=7.4e-05 Score=70.72 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=25.2
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 68 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~ 68 (250)
.+|++|+|++|+|+. +-.-..++++|++|+|++|. +++..-. ...++++|++|++++|.
T Consensus 278 ~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 278 SGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANK-FENLCQI-SASNFPSLTHLSIKGNT 336 (606)
T ss_dssp TTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCC-CSBGGGG-CGGGCTTCSEEECCSCS
T ss_pred cCCCEEeccCCccCC--CChhhcccccCCEEECccCC-cCcCchh-hhhccCcCCEEECCCCC
Confidence 345555555554331 10111345555555555552 3321111 12345555555555553
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=96.90 E-value=0.00012 Score=67.51 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=33.1
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~ 69 (250)
.+|++|+|++++|+...-..+ .++++|++|+|+++ +|++-....+ .++++|++|+++++..
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRN-SIRQIEVGAF-NGLASLNTLELFDNWL 135 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCC
T ss_pred CCccEEECcCCcCceECHHHc-CCCCCCCEEECCCC-ccCCcChhhc-cCcccCCEEECCCCcC
Confidence 466777777775554322222 35667777777766 3443221111 3466666666666643
No 71
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=96.88 E-value=7.8e-05 Score=68.76 Aligned_cols=59 Identities=14% Similarity=0.207 Sum_probs=24.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 67 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC 67 (250)
.+++.|+|++++|++..-..+ .++++|++|+|++| +|++..-..+ .++++|++|+++++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~L~~n 90 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNEN-IVSAVEPGAF-NNLFNLRTLGLRSN 90 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS
T ss_pred CCCcEEECCCCccceECHhHc-cCCCCCCEEECCCC-ccCEeChhhh-hCCccCCEEECCCC
Confidence 345555555554443221111 23555555555554 2332211111 23444555555444
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=96.88 E-value=0.00019 Score=61.67 Aligned_cols=121 Identities=10% Similarity=0.067 Sum_probs=64.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|+|++..-..+ .++++|++|+|+++. |+.-. ..+..++++|++|+++++....-.. ..-..+++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~i~-~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAF-HRLTKLRLLYLNDNK-LQTLP-AGIFKELKNLETLWVTDNKLQALPI--GVFDQLVNL 111 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSS-SSCTTCCEEECCSSC-CSCCC-TTTTSSCTTCCEEECCSSCCCCCCT--TTTTTCSSC
T ss_pred CCCCEEECcCCCCCeeCHHHh-cCCCCCCEEECCCCc-cCeeC-hhhhcCCCCCCEEECCCCcCCcCCH--hHcccccCC
Confidence 568888998886664332222 468888999998874 44211 1122467888888888885543210 112356778
Q ss_pred ceecCCc--hhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
++|.... +..+... .-.++.+|+.|+.. .|+.-.-..+ .++++|+.
T Consensus 112 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~ 161 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPR-VFDSLTKLTYLSLGYNELQSLPKGVF-DKLTSLKE 161 (270)
T ss_dssp CEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCE
T ss_pred CEEECCCCccCeeCHH-HhCcCcCCCEEECCCCcCCccCHhHc-cCCcccce
Confidence 8774432 1111111 11355667776532 2332111111 35667766
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=96.83 E-value=0.0003 Score=60.63 Aligned_cols=119 Identities=8% Similarity=-0.021 Sum_probs=71.2
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
++|++|+|++|.|++. . -...+++|++|+|++| ++++-.- ....++++|++|++++|...+-. ...-..+++|
T Consensus 63 ~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L 135 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGN-QLQSLPN-GVFDKLTNLKELVLVENQLQSLP--DGVFDKLTNL 135 (272)
T ss_dssp TTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTC
T ss_pred CCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCC-ccCccCh-hHhcCCcCCCEEECCCCcCCccC--HHHhccCCCC
Confidence 6899999999977763 2 2357899999999998 4553211 11256899999999999654321 0112357888
Q ss_pred ceecCCchhhhhhhc--cccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 86 NDVEGDSWEELVNTD--IGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 86 ~~L~~~s~~dl~~~~--i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
++|+.... .+.... .-.++.+|+.|+.. +|++..-.. -.++++|+.
T Consensus 136 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~ 185 (272)
T 3rfs_A 136 TYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV-FDKLTQLKD 185 (272)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCE
T ss_pred CEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHH-hcCCccCCE
Confidence 88854332 122111 12456777777532 344221111 236777777
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=96.82 E-value=0.00017 Score=66.25 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=29.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 68 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~ 68 (250)
.+++.|+|++|+|+......+ .++++|++|+|++|. |++-.... ..++++|++|+++++.
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~-i~~i~~~~-~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNH-IRTIEIGA-FNGLANLNTLELFDNR 123 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTT-SSCSSCCEEECCSSC-CCEECGGG-GTTCSSCCEEECCSSC
T ss_pred CCCcEEEccCCcCCeeCHHHh-hCCCCCCEEECCCCc-CCccChhh-ccCCccCCEEECCCCc
Confidence 456666666664444332222 245666666666652 33322111 1245566666666553
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.79 E-value=0.00013 Score=68.80 Aligned_cols=57 Identities=14% Similarity=0.022 Sum_probs=24.3
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~ 69 (250)
+|++|+|++|.|++.. ...+++|++|+|++|. +++..-..+ .++++|++|+++++..
T Consensus 100 ~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 100 SIETLHAANNNISRVS----CSRGQGKKNIYLANNK-ITMLRDLDE-GCRSRVQYLDLKLNEI 156 (487)
T ss_dssp TCCEEECCSSCCCCEE----ECCCSSCEEEECCSSC-CCSGGGBCG-GGGSSEEEEECTTSCC
T ss_pred CcCEEECcCCcCCCCC----ccccCCCCEEECCCCC-CCCCCchhh-cCCCCCCEEECCCCCC
Confidence 4444555554333321 1234555555555553 332111111 2355555555555543
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.78 E-value=0.00069 Score=64.07 Aligned_cols=102 Identities=12% Similarity=-0.018 Sum_probs=52.0
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCc
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 86 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~ 86 (250)
+|+.|++++|.+++... ...+++|++|++++|. +++.....+ .++++|++|+++++...+-......-..+++|+
T Consensus 332 ~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 406 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVC---PPSPSSFTFLNFTQNV-FTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406 (562)
T ss_dssp CCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSC-CCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred cceEEEccCCCcccccC---ccCCCCceEEECCCCc-cccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence 35566666654332211 1467778888888773 554222222 467778888888776554221112224567777
Q ss_pred eecCCch--hhhhhhcccccccccccccc
Q 025644 87 DVEGDSW--EELVNTDIGHGAQSLRWFVW 113 (250)
Q Consensus 87 ~L~~~s~--~dl~~~~i~~g~~~L~~L~c 113 (250)
.|+.... ..........++.+|+.|+.
T Consensus 407 ~L~l~~N~l~~~~~~~~~~~l~~L~~L~l 435 (562)
T 3a79_B 407 TLDVSLNSLNSHAYDRTCAWAESILVLNL 435 (562)
T ss_dssp EEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred EEECCCCcCCCccChhhhcCcccCCEEEC
Confidence 7643321 11001112345566666653
No 77
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=96.76 E-value=7.5e-05 Score=70.71 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=5.6
Q ss_pred CcCEEEccCC
Q 025644 7 SWEILDISGS 16 (250)
Q Consensus 7 ~L~~LnLsgC 16 (250)
+|+.|+|++|
T Consensus 308 ~L~~L~l~~n 317 (606)
T 3vq2_A 308 KWQSLSIIRC 317 (606)
T ss_dssp CCSEEEEESC
T ss_pred cCCEEEcccc
Confidence 4555555555
No 78
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.74 E-value=0.00022 Score=66.62 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=67.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|||++|+|+...-. .-.++++|++|||++|. |+.-.-. .-.++++|++|++++|..+.-. ...-..+++|
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~-~f~~L~~L~~L~Ls~N~-l~~l~~~-~f~~L~~L~~L~Ls~N~l~~l~--~~~~~~L~~L 150 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNP-IQSLALG-AFSGLSSLQKLVAVETNLASLE--NFPIGHLKTL 150 (635)
T ss_dssp TTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCC-CCEECGG-GGTTCTTCCEEECTTSCCCCST--TCCCTTCTTC
T ss_pred CCCCEEECCCCcCCCcChh-HhcCCCCCCEEEccCCc-CCCCCHH-HhcCCCCCCEEECCCCcCCCCC--hhhhhcCccc
Confidence 6899999999966632111 12478999999999984 5532211 2257899999999999654321 0012357888
Q ss_pred ceecCCc--hhhhhhhccccccccccccccC-----CCCHHHHHHHH
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP-----NIDKDSIEMMS 125 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~-----~ITD~sL~~La 125 (250)
++|+... +..+..-..-.++..|++|... .+....+..+.
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred CeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 8885432 1111111122455677777532 34445555544
No 79
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=96.74 E-value=0.002 Score=59.97 Aligned_cols=116 Identities=20% Similarity=0.111 Sum_probs=74.3
Q ss_pred CCcCEEEccCCCCCHHHHHHH--HhcCCCCCeEecCCCCCcCHHH-HHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhC
Q 025644 6 SSWEILDISGSDVSDFGLVKV--AQMCKSLKAVDISCCDRITAAG-VSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 82 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~l--a~~C~~L~~LdLS~C~~ITD~g-l~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~c 82 (250)
.+|++|+|++|.+++...... ...+++|++|+|++|. +++-. ......++++|++|++++|..+.-. .....+
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~~ 409 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFHPMP---DSCQWP 409 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCCCCC---SCCCCC
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCccCC---hhhccc
Confidence 689999999999998766543 3578999999999995 66543 2345678999999999999654210 012346
Q ss_pred CCCceecCCchhhhhhhccccc-cccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 83 PKLNDVEGDSWEELVNTDIGHG-AQSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 83 p~L~~L~~~s~~dl~~~~i~~g-~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
++|++|+..+.. +. .+... .++|+.|+.. +|++. ..++|+|+.
T Consensus 410 ~~L~~L~Ls~N~-l~--~l~~~~~~~L~~L~Ls~N~l~~~-----~~~l~~L~~ 455 (549)
T 2z81_A 410 EKMRFLNLSSTG-IR--VVKTCIPQTLEVLDVSNNNLDSF-----SLFLPRLQE 455 (549)
T ss_dssp TTCCEEECTTSC-CS--CCCTTSCTTCSEEECCSSCCSCC-----CCCCTTCCE
T ss_pred ccccEEECCCCC-cc--cccchhcCCceEEECCCCChhhh-----cccCChhcE
Confidence 788887543321 11 11111 1466666532 34431 246777777
No 80
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.74 E-value=0.00036 Score=67.78 Aligned_cols=117 Identities=13% Similarity=0.135 Sum_probs=67.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
..|+.|+|++|+|+. +-. ..++++|++|||+++. |+ .+-.-..++++|++|+++++..++-. . -..+++|
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp---~-l~~l~~L 510 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNR-LR--ALPPALAALRCLEVLQASDNALENVD---G-VANLPRL 510 (567)
T ss_dssp TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSSCCCCCG---G-GTTCSSC
T ss_pred cCceEEEecCCCCCC--CcC-ccccccCcEeecCccc-cc--ccchhhhcCCCCCEEECCCCCCCCCc---c-cCCCCCC
Confidence 468889999986664 223 4568899999999984 55 33233457899999999988665421 1 2347788
Q ss_pred ceecCCc--hhhhh-hhccccccccccccccC--CCCH--HHHHHHHhcCCCcee
Q 025644 86 NDVEGDS--WEELV-NTDIGHGAQSLRWFVWP--NIDK--DSIEMMSTECPRIIV 133 (250)
Q Consensus 86 ~~L~~~s--~~dl~-~~~i~~g~~~L~~L~c~--~ITD--~sL~~La~~Cp~L~~ 133 (250)
+.|+... +..+. ...+ .++++|+.|+.. .|+. .....+...+|+|++
T Consensus 511 ~~L~Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 511 QELLLCNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp CEEECCSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred cEEECCCCCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 8874432 22221 1111 345666766532 1221 123334445666654
No 81
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.73 E-value=8.9e-05 Score=74.26 Aligned_cols=81 Identities=11% Similarity=-0.065 Sum_probs=45.0
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
++|+.|||++|.|+...-..+ .++++|++|||++|..++.-.-.. ..++++|++|++++|...+-. -..-..+++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~-~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N~l~~~~--p~~~~~l~~L 99 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSF-PFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSSKIYFLH--PDAFQGLFHL 99 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSC-SSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTCCCCEEC--TTSSCSCSSC
T ss_pred CCcCEEECCCCcCCccChhHC-cccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCCcCcccC--HhHccCCccc
Confidence 567888888876654322222 457778888888774433211111 156777777777777543320 0011246667
Q ss_pred ceecC
Q 025644 86 NDVEG 90 (250)
Q Consensus 86 ~~L~~ 90 (250)
++|+.
T Consensus 100 ~~L~L 104 (844)
T 3j0a_A 100 FELRL 104 (844)
T ss_dssp CCEEC
T ss_pred CEeeC
Confidence 66643
No 82
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=96.68 E-value=0.0002 Score=66.09 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=50.9
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|.|++.....+ .++++|++|+|+++. ++.-.-. ...++++|++|+++++....-. ...-..+++|
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L 173 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAF-NGLASLNTLELFDNW-LTVIPSG-AFEYLSKLRELWLRNNPIESIP--SYAFNRVPSL 173 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC-CSBCCTT-TSSSCTTCCEEECCSCCCCEEC--TTTTTTCTTC
T ss_pred CCCCEEECCCCccCCcChhhc-cCcccCCEEECCCCc-CCccChh-hhcccCCCCEEECCCCCcceeC--HhHHhcCCcc
Confidence 678999999987765433322 368889999999874 5422111 1246888888888888654321 0112356777
Q ss_pred ceecCCc
Q 025644 86 NDVEGDS 92 (250)
Q Consensus 86 ~~L~~~s 92 (250)
+.|+...
T Consensus 174 ~~L~l~~ 180 (452)
T 3zyi_A 174 MRLDLGE 180 (452)
T ss_dssp CEEECCC
T ss_pred cEEeCCC
Confidence 7765443
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=96.68 E-value=0.0044 Score=54.25 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=70.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHH--HhCCCCCEEecCCCCCCcHH-HHHHHhhhC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFL--LHCHSLETLRCGGSPRSNHA-ARRCLGILK 82 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La--~~C~~L~~L~l~gC~~~dd~-al~~l~~~c 82 (250)
.+|++|+|++|+|+...-..+ .++++|++|||+++.-.++.++..-. .++++|++|++++|...+-. ....+...+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 689999999997665433333 36899999999999755555543333 78899999999999876432 223455678
Q ss_pred CCCceecCCc--hhhhhhhcccccccccccccc
Q 025644 83 PKLNDVEGDS--WEELVNTDIGHGAQSLRWFVW 113 (250)
Q Consensus 83 p~L~~L~~~s--~~dl~~~~i~~g~~~L~~L~c 113 (250)
++|+.|+... +.+........++.+|++|+.
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 9999985433 222111223345567777753
No 84
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=96.65 E-value=0.00011 Score=68.50 Aligned_cols=102 Identities=13% Similarity=-0.004 Sum_probs=66.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|.+++..- ....++++|++|+|++|. +++..+.....+|++|++|++++|..++... .. -..+++|
T Consensus 421 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~-~~~l~~L 496 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TA-FNSLSSL 496 (570)
T ss_dssp TTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECT-TT-TTTCTTC
T ss_pred CCCCEEeCcCCcccccch-hhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCCh-hh-hhcccCC
Confidence 689999999996654322 223579999999999995 6654444455689999999999997654310 11 1357899
Q ss_pred ceecCCch--hhhhhhccccccccccccc
Q 025644 86 NDVEGDSW--EELVNTDIGHGAQSLRWFV 112 (250)
Q Consensus 86 ~~L~~~s~--~dl~~~~i~~g~~~L~~L~ 112 (250)
++|+.... .++... .-.++++|+.|+
T Consensus 497 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~ 524 (570)
T 2z63_A 497 QVLNMASNQLKSVPDG-IFDRLTSLQKIW 524 (570)
T ss_dssp CEEECCSSCCSCCCTT-TTTTCTTCCEEE
T ss_pred CEEeCCCCcCCCCCHH-HhhcccCCcEEE
Confidence 99865432 222111 114567777774
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=96.59 E-value=3.8e-05 Score=64.66 Aligned_cols=81 Identities=6% Similarity=-0.053 Sum_probs=47.1
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCC-CCCcHHHHHHHhhhCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS-PRSNHAARRCLGILKPK 84 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC-~~~dd~al~~l~~~cp~ 84 (250)
.+|+.|+|++++|+...-..+ .++++|++|+|+++..++.-.-.. -.+|++|++|++++| ....-. ...-..+++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i~--~~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAF-SNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLTYID--PDALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTT-TTCTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCCEEC--TTSEECCTT
T ss_pred CcccEEEEeCCcceEECHHHc-cCCCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCeeEcC--HHHhCCCCC
Confidence 468888888886664332222 458888888888886444321111 146788888888874 332210 001124677
Q ss_pred CceecC
Q 025644 85 LNDVEG 90 (250)
Q Consensus 85 L~~L~~ 90 (250)
|+.|+.
T Consensus 107 L~~L~l 112 (239)
T 2xwt_C 107 LKFLGI 112 (239)
T ss_dssp CCEEEE
T ss_pred CCEEeC
Confidence 777643
No 86
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=96.58 E-value=0.0003 Score=64.69 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=52.6
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|.|++.....+ .++++|++|+|+++ +|++-.-. ...++++|++|+++++....-.. ..-..+++|
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L 162 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAF-NGLANLNTLELFDN-RLTTIPNG-AFVYLSKLKELWLRNNPIESIPS--YAFNRIPSL 162 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGG-TTCSSCCEEECCSS-CCSSCCTT-TSCSCSSCCEEECCSCCCCEECT--TTTTTCTTC
T ss_pred CCCCEEECCCCcCCccChhhc-cCCccCCEEECCCC-cCCeeCHh-HhhccccCceeeCCCCcccccCH--HHhhhCccc
Confidence 679999999997765443333 46899999999998 45532211 12467889999998886543210 112356777
Q ss_pred ceecCCc
Q 025644 86 NDVEGDS 92 (250)
Q Consensus 86 ~~L~~~s 92 (250)
+.|+...
T Consensus 163 ~~L~l~~ 169 (440)
T 3zyj_A 163 RRLDLGE 169 (440)
T ss_dssp CEEECCC
T ss_pred CEeCCCC
Confidence 7775543
No 87
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=96.55 E-value=0.00041 Score=68.72 Aligned_cols=60 Identities=28% Similarity=0.377 Sum_probs=30.5
Q ss_pred CCcCEEEccCCCCCHHHHHH--HHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVK--VAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~--la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~ 69 (250)
.+|++|||++|.|++..... +..+|++|++|++++|.-.+...+ .+|++|++|++++|..
T Consensus 151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~l 212 (768)
T 3rgz_A 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNNF 212 (768)
T ss_dssp TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc----ccCCcCCEEECcCCcC
Confidence 45666666666555433332 134566666666666532111111 4556666666666643
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.50 E-value=0.0018 Score=61.27 Aligned_cols=121 Identities=17% Similarity=0.059 Sum_probs=72.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHH-HHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAA-GVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 84 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~-gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~ 84 (250)
.+|++|+|++|.|++.....+ .++++|++|+|+++ ++++- .+.....++++|++|+++++...+... ...-..+++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~l~~ 429 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY-DRTCAWAES 429 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS-SCCCCCCTT
T ss_pred CCceEEECCCCccccchhhhh-cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccC-hhhhcCccc
Confidence 789999999998887333222 57899999999998 46642 333344689999999999997654100 011235688
Q ss_pred CceecCCchhhhhhhcccccc-ccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 85 LNDVEGDSWEELVNTDIGHGA-QSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 85 L~~L~~~s~~dl~~~~i~~g~-~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
|+.|+..+.. +.. .+..+. .+|+.|+.. +|+ ++..-..++++|+.
T Consensus 430 L~~L~l~~n~-l~~-~~~~~l~~~L~~L~L~~N~l~--~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 430 ILVLNLSSNM-LTG-SVFRCLPPKVKVLDLHNNRIM--SIPKDVTHLQALQE 477 (562)
T ss_dssp CCEEECCSSC-CCG-GGGSSCCTTCSEEECCSSCCC--CCCTTTTSSCCCSE
T ss_pred CCEEECCCCC-CCc-chhhhhcCcCCEEECCCCcCc--ccChhhcCCCCCCE
Confidence 8887544321 111 112233 577777532 344 11111126677776
No 89
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.44 E-value=0.00056 Score=60.20 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=32.6
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS 70 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~ 70 (250)
.+|++|+|++|.|++..- .-.++|++|+++++. |+.-.- ....++++|++|+++++...
T Consensus 102 ~~L~~L~L~~n~l~~l~~----~~~~~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPP----NLPSSLVELRIHDNR-IRKVPK-GVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp TTCCEEECCSSCCCSCCS----SCCTTCCEEECCSSC-CCCCCS-GGGSSCSSCCEEECCSCCCB
T ss_pred CCCCEEECCCCcCCccCc----cccccCCEEECCCCc-cCccCH-hHhCCCccCCEEECCCCccc
Confidence 567777777775552111 112677777777763 432111 11245677777777776543
No 90
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=96.44 E-value=0.0006 Score=61.24 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=78.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
++|+.|+|++|.|++.....+ .++++|++|+|++|. +++ +......+++|++|++++|....-.. .+ ..+++|
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~--~~-~~l~~L 320 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNR-LVA--LNLYGQPIPTLKVLDLSHNHLLHVER--NQ-PQFDRL 320 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGG-TTCSSCCEEECCSSC-CCE--EECSSSCCTTCCEEECCSSCCCCCGG--GH-HHHTTC
T ss_pred CCccEEECCCCcCCCcChhHc-cccccCCEEECCCCc-Ccc--cCcccCCCCCCCEEECCCCcceecCc--cc-cccCcC
Confidence 689999999998776533333 468999999999984 554 22223578999999999996543210 11 347889
Q ss_pred ceecCCchhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 86 NDVEGDSWEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 86 ~~L~~~s~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
+.|+.... .+.... -..+++|+.|+.. .++...+..+....++..+
T Consensus 321 ~~L~L~~N-~i~~~~-~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~ 368 (390)
T 3o6n_A 321 ENLYLDHN-SIVTLK-LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAV 368 (390)
T ss_dssp SEEECCSS-CCCCCC-CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTB
T ss_pred CEEECCCC-ccceeC-chhhccCCEEEcCCCCccchhHHHHHHHHHhhcc
Confidence 99855432 122222 2456788888643 5777778777766666554
No 91
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=96.42 E-value=0.00022 Score=67.42 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=47.2
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|.+++..-.. ...+++|++|+|++|. ++.........++++|++|++++|...+... ..-..+|+|
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L 451 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISSE--QLFDGLPAL 451 (606)
T ss_dssp TTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCCBTTCT--TTTTTCTTC
T ss_pred CCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCCccCCcCH--HHHhCCCCC
Confidence 57788888887655432222 2357778888888774 4433322334567778888887775433210 111346777
Q ss_pred ceecCC
Q 025644 86 NDVEGD 91 (250)
Q Consensus 86 ~~L~~~ 91 (250)
+.|+..
T Consensus 452 ~~L~L~ 457 (606)
T 3t6q_A 452 QHLNLQ 457 (606)
T ss_dssp CEEECT
T ss_pred CEEECC
Confidence 776443
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.40 E-value=0.00052 Score=56.40 Aligned_cols=102 Identities=11% Similarity=0.046 Sum_probs=59.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++++|++..-. +..++++|++|+|+++ ++++-. .....++++|++|+++++..++-. ...-..+++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTNQLQSLP--NGVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTC
T ss_pred CCCcEEEcCCCccCcCChh-hhcccccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCCcCCccC--HhHhcCccCC
Confidence 5789999999966643221 2356899999999997 455221 112356889999999988654321 0112357788
Q ss_pred ceecCCc--hhhhhhhcccccccccccccc
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFVW 113 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c 113 (250)
++|+... +..+... .-.++.+|+.|+.
T Consensus 103 ~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l 131 (208)
T 2o6s_A 103 KELALNTNQLQSLPDG-VFDKLTQLKDLRL 131 (208)
T ss_dssp CEEECCSSCCCCCCTT-TTTTCTTCCEEEC
T ss_pred CEEEcCCCcCcccCHh-HhccCCcCCEEEC
Confidence 8874432 1111110 1134566777653
No 93
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.38 E-value=0.00033 Score=63.00 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=25.1
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~ 69 (250)
.+|+.|+|++|+|+...-..+ .++++|++|||+++. |+.-.- ....++++|++|+++++..
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~i 124 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLSSNH-LHTLDE-FLFSDLQALEVLLLYNNHI 124 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSCC
T ss_pred cccCEEECCCCcCCccChhhc-cCCCCCCEEECCCCc-CCcCCH-HHhCCCcCCCEEECCCCcc
Confidence 344555555543332211111 234555555555542 322100 0113455555555555543
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.37 E-value=0.00055 Score=58.12 Aligned_cols=101 Identities=10% Similarity=0.054 Sum_probs=57.6
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++++|++..-..+ .++++|++|+|+++. |++..-. ...++++|++|+++++..+.-. ...-..+++|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L 109 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQ-LQTLSAG-VFDDLTELGTLGLANNQLASLP--LGVFDHLTQL 109 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSC-CCCCCTT-TTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTC
T ss_pred CCCCEEEccCCCcCccCHhHh-cCcccCCEEECCCCc-CCccCHh-HhccCCcCCEEECCCCcccccC--hhHhcccCCC
Confidence 578889998886655433222 368889999998873 5542211 1246788888888888654321 0112356778
Q ss_pred ceecCCc--hhhhhhhccccccccccccc
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFV 112 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~ 112 (250)
++|+... +..+.. ..-.++.+|+.|+
T Consensus 110 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~ 137 (251)
T 3m19_A 110 DKLYLGGNQLKSLPS-GVFDRLTKLKELR 137 (251)
T ss_dssp CEEECCSSCCCCCCT-TTTTTCTTCCEEE
T ss_pred CEEEcCCCcCCCcCh-hHhccCCcccEEE
Confidence 8774432 111110 0113456666665
No 95
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.35 E-value=0.0014 Score=61.37 Aligned_cols=32 Identities=6% Similarity=0.087 Sum_probs=14.3
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC 41 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C 41 (250)
.+|++|+|++|+|++.. ...+++|++||+++|
T Consensus 64 ~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N 95 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD----LSQNTNLTYLACDSN 95 (457)
T ss_dssp TTCSEEECCSSCCSCCC----CTTCTTCSEEECCSS
T ss_pred CCCCEEEccCCcCCeEc----cccCCCCCEEECcCC
Confidence 34555555555443321 223444555555544
No 96
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.34 E-value=0.00079 Score=60.12 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCCCeEecCCCCCcCH-HHHHHHHHhCCCCCEEecCCCCCCcH
Q 025644 20 DFGLVKVAQMCKSLKAVDISCCDRITA-AGVSEFLLHCHSLETLRCGGSPRSNH 72 (250)
Q Consensus 20 D~gL~~la~~C~~L~~LdLS~C~~ITD-~gl~~La~~C~~L~~L~l~gC~~~dd 72 (250)
...+..+...+|+|+.||||+.. |++ .++..+...+++|++|+|++....+-
T Consensus 159 ~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 159 AATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp HHHHHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred HHHHHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 33445555789999999999974 554 45667778899999999998866553
No 97
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.33 E-value=0.00046 Score=66.22 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=24.6
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 68 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~ 68 (250)
+|+.|+|++|.+++. .....+++|++|+|++|. +++.....+ .++++|++|++++|.
T Consensus 233 ~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 233 ELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE-LEKIMYHPF-VKMQRLERLYISNNR 289 (597)
T ss_dssp CCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCEEESGGG-TTCSSCCEEECTTSC
T ss_pred CCCEEECCCCCCCCC---hhhccCCCCCEEECCCCc-cCCCCHHHh-cCccCCCEEECCCCC
Confidence 355555555544432 122345555555555542 332211111 234555555555543
No 98
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=96.33 E-value=0.0014 Score=67.37 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=19.4
Q ss_pred cCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644 29 MCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 68 (250)
Q Consensus 29 ~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~ 68 (250)
++++|++|+|++|...+.-. .-..++++|++|+++++.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP--~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLP--DFLYDLPELQSLNIACNR 526 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCC--GGGGGCSSCCEEECTTCT
T ss_pred cCCCCCEEECcCCCCCccCh--HHHhCCCCCCEEECcCCC
Confidence 45666666666664222110 112355666666666665
No 99
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.31 E-value=0.00085 Score=65.12 Aligned_cols=79 Identities=18% Similarity=0.104 Sum_probs=55.1
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|+|+ .+-.-..++++|++|||+++. |+. +. -..++++|++|+++++..++-..-..+ ..+++|
T Consensus 463 ~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l-~~l~~L 535 (567)
T 1dce_A 463 LLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNA-LEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPL-VSCPRL 535 (567)
T ss_dssp TTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSC-CCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGG-GGCTTC
T ss_pred ccCcEeecCccccc--ccchhhhcCCCCCEEECCCCC-CCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH-hcCCCC
Confidence 58999999999776 222233579999999999984 664 44 345799999999999965443100112 358899
Q ss_pred ceecCC
Q 025644 86 NDVEGD 91 (250)
Q Consensus 86 ~~L~~~ 91 (250)
+.|+..
T Consensus 536 ~~L~L~ 541 (567)
T 1dce_A 536 VLLNLQ 541 (567)
T ss_dssp CEEECT
T ss_pred CEEEec
Confidence 998544
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.20 E-value=0.00066 Score=55.76 Aligned_cols=101 Identities=13% Similarity=0.082 Sum_probs=62.9
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|+|++..- .+-.++++|++|+|+++. ++.-.- ....++++|++|+++++...+-. ...-..+++|
T Consensus 52 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L 126 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLSTNQ-LQSLPN-GVFDKLTQLKELALNTNQLQSLP--DGVFDKLTQL 126 (208)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTC
T ss_pred ccCcEEECCCCccCccCh-hhcCCCCCcCEEECCCCc-CCccCH-hHhcCccCCCEEEcCCCcCcccC--HhHhccCCcC
Confidence 689999999997764221 123578999999999984 552211 12357899999999999654321 0112457889
Q ss_pred ceecCCc--hhhhhhhccccccccccccc
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFV 112 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~ 112 (250)
++|+... +.++.. ..-.++.+|+.|+
T Consensus 127 ~~L~l~~N~l~~~~~-~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPD-GVFDRLTSLQYIW 154 (208)
T ss_dssp CEEECCSSCCSCCCT-TTTTTCTTCCEEE
T ss_pred CEEECCCCccceeCH-HHhccCCCccEEE
Confidence 9885433 222211 1124566777775
No 101
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.20 E-value=0.0021 Score=60.18 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=54.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|.|++. .. ...+++|++|||++|. +++-. ..++++|++|++++|..++-. + ..+++|
T Consensus 42 ~~L~~L~Ls~n~l~~~--~~-l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~l~~~~----~-~~l~~L 108 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM--TG-IEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNKLTNLD----V-TPLTKL 108 (457)
T ss_dssp TTCCEEECCSSCCCCC--TT-GGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSCCSCCC----C-TTCTTC
T ss_pred CCCCEEEccCCCcccC--hh-hcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCCCceee----c-CCCCcC
Confidence 6899999999977753 22 3579999999999994 66632 457899999999999765532 2 357888
Q ss_pred ceecC
Q 025644 86 NDVEG 90 (250)
Q Consensus 86 ~~L~~ 90 (250)
++|+.
T Consensus 109 ~~L~L 113 (457)
T 3bz5_A 109 TYLNC 113 (457)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 88744
No 102
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=96.16 E-value=0.0013 Score=60.48 Aligned_cols=100 Identities=12% Similarity=0.068 Sum_probs=54.8
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCc
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 86 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~ 86 (250)
+|+.|+|++|.|++..... ..++++|++|||+++. |++.....+ .++++|+.|+++++...+-.. ..-..+++|+
T Consensus 225 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~ 299 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLA-VRHLVYLRFLNLSYNP-ISTIEGSML-HELLRLQEIQLVGGQLAVVEP--YAFRGLNYLR 299 (477)
T ss_dssp CCSEEEEESSCCCSCCHHH-HTTCTTCCEEECCSSC-CCEECTTSC-TTCTTCCEEECCSSCCSEECT--TTBTTCTTCC
T ss_pred cccEEECcCCcccccCHHH-hcCccccCeeECCCCc-CCccChhhc-cccccCCEEECCCCccceECH--HHhcCcccCC
Confidence 6777777777666443332 2467888888888874 543322222 467888888888875543210 0113467777
Q ss_pred eecCCc--hhhhhhhccccccccccccc
Q 025644 87 DVEGDS--WEELVNTDIGHGAQSLRWFV 112 (250)
Q Consensus 87 ~L~~~s--~~dl~~~~i~~g~~~L~~L~ 112 (250)
.|+... +..+... .-..+.+|+.|+
T Consensus 300 ~L~L~~N~l~~~~~~-~~~~l~~L~~L~ 326 (477)
T 2id5_A 300 VLNVSGNQLTTLEES-VFHSVGNLETLI 326 (477)
T ss_dssp EEECCSSCCSCCCGG-GBSCGGGCCEEE
T ss_pred EEECCCCcCceeCHh-HcCCCcccCEEE
Confidence 774432 2221111 113456676664
No 103
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=96.12 E-value=0.001 Score=57.10 Aligned_cols=121 Identities=11% Similarity=0.040 Sum_probs=67.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|.|+...- .+..++++|++|+|+++. ++.-.. ....++++|++|+++++..+.-.. ..-..+++|
T Consensus 61 ~~L~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L 135 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQTLPA-GIFKELKNLETLWVTDNK-LQALPI-GVFDQLVNLAELRLDRNQLKSLPP--RVFDSLTKL 135 (270)
T ss_dssp TTCCEEECCSSCCSCCCT-TTTSSCTTCCEEECCSSC-CCCCCT-TTTTTCSSCCEEECCSSCCCCCCT--TTTTTCTTC
T ss_pred CCCCEEECCCCccCeeCh-hhhcCCCCCCEEECCCCc-CCcCCH-hHcccccCCCEEECCCCccCeeCH--HHhCcCcCC
Confidence 688999999986663221 123568899999999884 543221 123568899999998886543210 112357888
Q ss_pred ceecCCchhhhhhhc--cccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644 86 NDVEGDSWEELVNTD--IGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 86 ~~L~~~s~~dl~~~~--i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~ 133 (250)
++|+.... .+.... .-.++.+|+.|+.. .|+.-.-..+ .++++|+.
T Consensus 136 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 185 (270)
T 2o6q_A 136 TYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF-DKLTELKT 185 (270)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCE
T ss_pred CEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeChhHh-ccCCCcCE
Confidence 88754331 111111 11456677777532 2332211112 25677776
No 104
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=96.10 E-value=0.003 Score=64.82 Aligned_cols=104 Identities=12% Similarity=0.014 Sum_probs=62.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCH----HHHHHHH---HhCCCCCEEecCCCCCCcHHHHHHH
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITA----AGVSEFL---LHCHSLETLRCGGSPRSNHAARRCL 78 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD----~gl~~La---~~C~~L~~L~l~gC~~~dd~al~~l 78 (250)
.+|++|+|++|.++..-- ..-.++++|++|+|++|..++. .++..+. .++++|++|++++|..+.-.....+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 679999999984332111 2234689999999999976776 4444444 5667999999999965521100012
Q ss_pred hhhCCCCceecCCchhhhhhhccccccccccccc
Q 025644 79 GILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV 112 (250)
Q Consensus 79 ~~~cp~L~~L~~~s~~dl~~~~i~~g~~~L~~L~ 112 (250)
..+++|+.|+.... .+.....-.++++|+.|.
T Consensus 570 -~~L~~L~~L~Ls~N-~l~~lp~~~~L~~L~~L~ 601 (876)
T 4ecn_A 570 -QKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLK 601 (876)
T ss_dssp -TTCTTCCEEECTTS-CCCBCCCCCTTSEESEEE
T ss_pred -hcCCCCCEEECCCC-CcccchhhcCCCcceEEE
Confidence 35788888744321 111111124456667665
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.10 E-value=0.00066 Score=57.09 Aligned_cols=80 Identities=9% Similarity=0.008 Sum_probs=42.0
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
..++.|+|++++|+...-..+-.++++|++|+|+++. |+.-.-. ...++++|++|+++++..+.-.. ..-..+++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEG-AFEGASGVNEILLTSNRLENVQH--KMFKGLESL 107 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCCCCCG--GGGTTCSSC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHH-HhCCCCCCCEEECCCCccCccCH--hHhcCCcCC
Confidence 3566777777755543211223467777777777763 4432111 12356777777777775432210 011346666
Q ss_pred ceec
Q 025644 86 NDVE 89 (250)
Q Consensus 86 ~~L~ 89 (250)
+.|+
T Consensus 108 ~~L~ 111 (220)
T 2v70_A 108 KTLM 111 (220)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6663
No 106
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=96.09 E-value=0.0016 Score=61.56 Aligned_cols=124 Identities=11% Similarity=0.010 Sum_probs=71.8
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|.|++..-..+ .++++|++|+|++|. ++.-.-.. ..++++|++|++++|...+-.. -..-..+++|
T Consensus 80 ~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~l-p~~~~~l~~L 155 (606)
T 3vq2_A 80 HHLSNLILTGNPIQSFSPGSF-SGLTSLENLVAVETK-LASLESFP-IGQLITLKKLNVAHNFIHSCKL-PAYFSNLTNL 155 (606)
T ss_dssp TTCCEEECTTCCCCCCCTTSS-TTCTTCCEEECTTSC-CCCSSSSC-CTTCTTCCEEECCSSCCCCCCC-CGGGGTCTTC
T ss_pred hhcCEeECCCCcccccChhhc-CCcccCCEEEccCCc-cccccccc-cCCCCCCCEEeCCCCcccceec-hHhHhhcCCC
Confidence 689999999996665432222 468899999999985 33221111 3568889999999886543110 0112357888
Q ss_pred ceecCCc--hhh--------hhh-------hc--------cc---ccccccccccc--CCCCHHHHHHHHhcCCCcee
Q 025644 86 NDVEGDS--WEE--------LVN-------TD--------IG---HGAQSLRWFVW--PNIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 86 ~~L~~~s--~~d--------l~~-------~~--------i~---~g~~~L~~L~c--~~ITD~sL~~La~~Cp~L~~ 133 (250)
++|+... +.+ +.. .. +. -...+|+.|.. ..++.........+++.|++
T Consensus 156 ~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 233 (606)
T 3vq2_A 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233 (606)
T ss_dssp CEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred CEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccc
Confidence 8874322 111 110 00 01 01125666653 35776777776778888876
No 107
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.07 E-value=0.0012 Score=63.26 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=72.3
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
++|+.|+|++|.|++.....+ .++++|++|+|++|. ++. +......+|+|++|++++|..+.-. ..+ ..+|+|
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~-~~l~~L 326 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNR-LVA--LNLYGQPIPTLKVLDLSHNHLLHVE--RNQ-PQFDRL 326 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGG-TTCSSCCEEECTTSC-CCE--EECSSSCCTTCCEEECCSSCCCCCG--GGH-HHHTTC
T ss_pred CCCCEEECCCCccCCCCHHHh-cCccCCCEEECCCCC-CCC--CCcccccCCCCcEEECCCCCCCccC--ccc-ccCCCC
Confidence 689999999997776533333 368999999999984 544 2233356899999999999654321 012 357888
Q ss_pred ceecCCchhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCce
Q 025644 86 NDVEGDSWEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRII 132 (250)
Q Consensus 86 ~~L~~~s~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~ 132 (250)
+.|+.... .+.... -..+++|+.|+.. .++...+..+...-+...
T Consensus 327 ~~L~L~~N-~l~~~~-~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~ 373 (597)
T 3oja_B 327 ENLYLDHN-SIVTLK-LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 373 (597)
T ss_dssp SEEECCSS-CCCCCC-CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTT
T ss_pred CEEECCCC-CCCCcC-hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhc
Confidence 88854432 122121 2456677777532 355555655554444443
No 108
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=96.04 E-value=0.002 Score=58.54 Aligned_cols=82 Identities=16% Similarity=0.150 Sum_probs=50.6
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHH-HHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSE-FLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 84 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~-La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~ 84 (250)
.+|++|+|++|.|++..-..+ .++++|++|+|++|. +++..+.. ...++++|++|+++++...+... ..+-..+++
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~ 155 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLNMRR 155 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-CGGGGGCTT
T ss_pred ccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCc-ccccCCCCc
Confidence 678888888886665433323 357888888888874 66544443 23467888888888885443210 011235677
Q ss_pred CceecC
Q 025644 85 LNDVEG 90 (250)
Q Consensus 85 L~~L~~ 90 (250)
|++|+.
T Consensus 156 L~~L~L 161 (455)
T 3v47_A 156 FHVLDL 161 (455)
T ss_dssp CCEEEC
T ss_pred ccEEeC
Confidence 777643
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.01 E-value=0.0011 Score=56.34 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=48.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|.|++..-. .-.++++|++|+|+++. ++.-.. ....++++|++|+++++..+.-. ...-..+++|
T Consensus 59 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L 133 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAG-VFDDLTELGTLGLANNQ-LASLPL-GVFDHLTQLDKLYLGGNQLKSLP--SGVFDRLTKL 133 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTC
T ss_pred ccCCEEECCCCcCCccCHh-HhccCCcCCEEECCCCc-ccccCh-hHhcccCCCCEEEcCCCcCCCcC--hhHhccCCcc
Confidence 6788999998866653221 12467888888888874 552211 12246788888888888544221 0112346777
Q ss_pred ceecC
Q 025644 86 NDVEG 90 (250)
Q Consensus 86 ~~L~~ 90 (250)
+.|+.
T Consensus 134 ~~L~L 138 (251)
T 3m19_A 134 KELRL 138 (251)
T ss_dssp CEEEC
T ss_pred cEEEC
Confidence 77743
No 110
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.00 E-value=0.002 Score=61.84 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=29.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 68 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~ 68 (250)
.++++|+|++++|++..-..+ .++++|++|||++|. ++...-.. ..+|++|++|++++|.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANF-TRYSQLTSLDVGFNT-ISKLEPEL-CQKLPMLKVLNLQHNE 84 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGG-GGGTTCSEEECCSSC-CCCCCTTH-HHHCTTCCEEECCSSC
T ss_pred CCCcEEECCCCCCCCcCHHHH-hCCCcCcEEECCCCc-cCccCHHH-HhcccCcCEEECCCCc
Confidence 456666666664443221112 245666666666652 33322111 2345666666666553
No 111
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=95.94 E-value=0.0041 Score=61.21 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=37.0
Q ss_pred CCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCceecCCchhhhhhh-ccccccccc
Q 025644 30 CKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNT-DIGHGAQSL 108 (250)
Q Consensus 30 C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~~L~~~s~~dl~~~-~i~~g~~~L 108 (250)
.++|++|+|++| +|+. +...+++|+.|+++++..++ |...+++|+.|+.... .+..+ ..-.++++|
T Consensus 220 ~~~L~~L~Ls~N-~L~~-----lp~~l~~L~~L~Ls~N~L~~------lp~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L 286 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTS-----LPVLPSELKELMVSGNRLTS------LPMLPSGLLSLSVYRN-QLTRLPESLIHLSSE 286 (622)
T ss_dssp CTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSC------CCCCCTTCCEEECCSS-CCCSCCGGGGGSCTT
T ss_pred CCCCCEEEccCC-ccCc-----CCCCCCcCcEEECCCCCCCc------CCcccccCcEEeCCCC-CCCcCCHHHhhcccc
Confidence 355555566555 3443 11455666666666664332 1224556666533221 11100 001344556
Q ss_pred cccccC--CCCHHHHHHHH
Q 025644 109 RWFVWP--NIDKDSIEMMS 125 (250)
Q Consensus 109 ~~L~c~--~ITD~sL~~La 125 (250)
+.|+.. .|+......+.
T Consensus 287 ~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 287 TTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CEEECCSCCCCHHHHHHHH
T ss_pred CEEEecCCCCCCcCHHHHH
Confidence 665432 45555544443
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=95.93 E-value=0.0013 Score=55.45 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=62.3
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|+|+...- .+-.++++|++|||+++ +|+.-. .....++++|++|+++++....-. ..+ ..+++|
T Consensus 64 ~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~lp--~~~-~~l~~L 137 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPV-GVFDSLTQLTVLDLGTN-QLTVLP-SAVFDRLVHLKELFMCCNKLTELP--RGI-ERLTHL 137 (229)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCSCC--TTG-GGCTTC
T ss_pred cCCcEEECCCCCCCCcCh-hhcccCCCcCEEECCCC-cCCccC-hhHhCcchhhCeEeccCCcccccC--ccc-ccCCCC
Confidence 689999999996643221 12357899999999998 465321 112357899999999999654221 112 568899
Q ss_pred ceecCCc--hhhhhhhccccccccccccc
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFV 112 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~ 112 (250)
++|+... +..+.. ..-.++.+|+.|.
T Consensus 138 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 138 THLALDQNQLKSIPH-GAFDRLSSLTHAY 165 (229)
T ss_dssp SEEECCSSCCCCCCT-TTTTTCTTCCEEE
T ss_pred CEEECCCCcCCccCH-HHHhCCCCCCEEE
Confidence 9985432 222211 1124566777764
No 113
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=95.85 E-value=0.0004 Score=69.51 Aligned_cols=81 Identities=11% Similarity=0.023 Sum_probs=45.9
Q ss_pred CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644 6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 84 (250)
Q Consensus 6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~ 84 (250)
.+|++|||++| .++...-.. -.++++|++|||++|. |+...-.. ..++++|++|++++|..++...-...-..+++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N~-l~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSSK-IYFLHPDA-FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTCC-CCEECTTS-SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred ccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCCc-CcccCHhH-ccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 67888888888 433211111 2567888888888874 44322111 23678888888888865442100001134677
Q ss_pred Cceec
Q 025644 85 LNDVE 89 (250)
Q Consensus 85 L~~L~ 89 (250)
|++|+
T Consensus 125 L~~L~ 129 (844)
T 3j0a_A 125 LTRLD 129 (844)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 77764
No 114
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=95.82 E-value=0.0014 Score=57.47 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=30.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~ 69 (250)
.+|++|+|+++.|+..... ..+++|++|||+++. ++ .+.....++++|++|+++++..
T Consensus 55 ~~L~~L~L~~n~l~~~~~~---~~l~~L~~L~Ls~N~-l~--~l~~~~~~l~~L~~L~l~~N~l 112 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKLQVD---GTLPVLGTLDLSHNQ-LQ--SLPLLGQTLPALTVLDVSFNRL 112 (290)
T ss_dssp TTCCEEECTTSCCCEEECC---SCCTTCCEEECCSSC-CS--SCCCCTTTCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCccCcccCC---CCCCcCCEEECCCCc-CC--cCchhhccCCCCCEEECCCCcC
Confidence 4666777777655542211 456666666666652 33 1222234556666666666543
No 115
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=95.82 E-value=0.006 Score=54.01 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=57.3
Q ss_pred CCcCEEEccCCCCCHHHHHHH--HhcCCCCCeEecCCCCCcCHHHHHHHH---HhCCCCCEEecCCCCCCcHHHHHHHhh
Q 025644 6 SSWEILDISGSDVSDFGLVKV--AQMCKSLKAVDISCCDRITAAGVSEFL---LHCHSLETLRCGGSPRSNHAARRCLGI 80 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~l--a~~C~~L~~LdLS~C~~ITD~gl~~La---~~C~~L~~L~l~gC~~~dd~al~~l~~ 80 (250)
.+|+.|+|++|.|++.....+ ...++.|+.++|+++ .+++.++..+. .++++|++|+++++..++-. ..+-.
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~--~~~~~ 298 (353)
T 2z80_A 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLKSVP--DGIFD 298 (353)
T ss_dssp TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC--TTTTT
T ss_pred ccccEEECCCCccccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCCCccC--HHHHh
Confidence 679999999997766443333 245888999999998 58998888764 57899999999999654321 11224
Q ss_pred hCCCCceecC
Q 025644 81 LKPKLNDVEG 90 (250)
Q Consensus 81 ~cp~L~~L~~ 90 (250)
.+++|++|+.
T Consensus 299 ~l~~L~~L~L 308 (353)
T 2z80_A 299 RLTSLQKIWL 308 (353)
T ss_dssp TCTTCCEEEC
T ss_pred cCCCCCEEEe
Confidence 5788888744
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=95.79 E-value=0.0014 Score=58.95 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=46.2
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
..++.|+|++++|++..-..+..++++|++|+|+++. |+.-.-.. ..++++|++|+++++....-.. ..-..+++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~-~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEA-FVPVPNLRYLDLSSNHLHTLDE--FLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSSCCCEECT--TTTTTCTTC
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhh-ccCCCCCCEEECCCCcCCcCCH--HHhCCCcCC
Confidence 4577888888876664444344467888888888873 54322111 2367788888888775433210 011245666
Q ss_pred cee
Q 025644 86 NDV 88 (250)
Q Consensus 86 ~~L 88 (250)
+.|
T Consensus 115 ~~L 117 (361)
T 2xot_A 115 EVL 117 (361)
T ss_dssp CEE
T ss_pred CEE
Confidence 665
No 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.73 E-value=0.00094 Score=53.54 Aligned_cols=101 Identities=14% Similarity=0.051 Sum_probs=62.3
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
++|+.|+|++++|+...- ..-.++++|++|+|+++ +++.-.- ....++++|++|+++++..+.-. ...-..+++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHENKLQSLP--NGVFDKLTQL 102 (177)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTC
T ss_pred CCCcEEEeCCCcccEeCH-HHhcCcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCCCccccC--HHHhhCCccc
Confidence 689999999996663221 12256899999999998 4652211 12257899999999999654321 0112357888
Q ss_pred ceecCCc--hhhhhhhccccccccccccc
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFV 112 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~ 112 (250)
++|+... ++.+.. .+-.++.+|+.|+
T Consensus 103 ~~L~l~~N~l~~~~~-~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 103 KELALDTNQLKSVPD-GIFDRLTSLQKIW 130 (177)
T ss_dssp CEEECCSSCCSCCCT-TTTTTCTTCCEEE
T ss_pred CEEECcCCcceEeCH-HHhcCCcccCEEE
Confidence 8875432 221111 1124567777775
No 118
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=95.57 E-value=0.0035 Score=56.17 Aligned_cols=76 Identities=18% Similarity=0.108 Sum_probs=53.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|.|++.. .....+++|++|||++|. ++. +..-...+++|++|++++|..++-. ...+++|
T Consensus 272 ~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~L 341 (390)
T 3o6n_A 272 QRLERLYISNNRLVALN--LYGQPIPTLKVLDLSHNH-LLH--VERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTL 341 (390)
T ss_dssp SSCCEEECCSSCCCEEE--CSSSCCTTCCEEECCSSC-CCC--CGGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCC
T ss_pred ccCCEEECCCCcCcccC--cccCCCCCCCEEECCCCc-cee--cCccccccCcCCEEECCCCccceeC-----chhhccC
Confidence 68999999999776532 223568999999999984 552 2222356899999999999765542 3457888
Q ss_pred ceecCC
Q 025644 86 NDVEGD 91 (250)
Q Consensus 86 ~~L~~~ 91 (250)
+.|+..
T Consensus 342 ~~L~l~ 347 (390)
T 3o6n_A 342 KNLTLS 347 (390)
T ss_dssp SEEECC
T ss_pred CEEEcC
Confidence 887543
No 119
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=95.55 E-value=0.0024 Score=55.99 Aligned_cols=80 Identities=13% Similarity=0.091 Sum_probs=56.3
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
++|+.|+|++|.|++.....+ .++++|++|+|++|. +++.....+ .++++|+.|++++|..+.-. .. -..+++|
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~lp--~~-l~~l~~L 265 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNS-ISAVDNGSL-ANTPHLRELHLNNNKLVKVP--GG-LADHKYI 265 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSC-CCEECTTTG-GGSTTCCEEECCSSCCSSCC--TT-TTTCSSC
T ss_pred ccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCc-CceeChhhc-cCCCCCCEEECCCCcCccCC--hh-hccCCCc
Confidence 689999999998776544333 468999999999984 655332222 46899999999999655321 01 2357888
Q ss_pred ceecCC
Q 025644 86 NDVEGD 91 (250)
Q Consensus 86 ~~L~~~ 91 (250)
+.|+..
T Consensus 266 ~~L~l~ 271 (330)
T 1xku_A 266 QVVYLH 271 (330)
T ss_dssp CEEECC
T ss_pred CEEECC
Confidence 887543
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.55 E-value=0.0018 Score=64.59 Aligned_cols=77 Identities=13% Similarity=0.055 Sum_probs=49.3
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|.|++ |..-..++++|++|+|+++ +|+ .|-.-..++++|++|+|+++.++.-- ..+ ..+++|
T Consensus 224 ~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp--~~~-~~l~~L 295 (727)
T 4b8c_D 224 QLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNRLTSLP--AEL-GSCFQL 295 (727)
T ss_dssp CCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSCCSSCC--SSG-GGGTTC
T ss_pred CCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCcCCccC--hhh-cCCCCC
Confidence 678899999985542 1111227889999999988 465 23222367889999999988654210 012 346788
Q ss_pred ceecC
Q 025644 86 NDVEG 90 (250)
Q Consensus 86 ~~L~~ 90 (250)
+.|+.
T Consensus 296 ~~L~L 300 (727)
T 4b8c_D 296 KYFYF 300 (727)
T ss_dssp SEEEC
T ss_pred CEEEC
Confidence 88744
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=95.52 E-value=0.0051 Score=60.55 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~ 69 (250)
++|+.|+|++|+|+. |...+++|++|||++|. |+. |-...++|++|++++|..
T Consensus 61 ~~L~~L~L~~N~l~~-----lp~~l~~L~~L~Ls~N~-l~~-----lp~~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-----LPALPPELRTLEVSGNQ-LTS-----LPVLPPGLLELSIFSNPL 113 (622)
T ss_dssp TTCSEEEECSCCCSC-----CCCCCTTCCEEEECSCC-CSC-----CCCCCTTCCEEEECSCCC
T ss_pred CCCcEEEecCCCCCC-----CCCcCCCCCEEEcCCCc-CCc-----CCCCCCCCCEEECcCCcC
Confidence 467777777775552 22256677777777763 442 112556666666666643
No 122
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=95.36 E-value=0.0023 Score=54.59 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=52.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|.|++.....+ .++++|++|++++|. ++.-.-.. ..++++|++|+++++...+...- ..-..+++|
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~-~~~~~l~~L 151 (276)
T 2z62_A 76 SHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETN-LASLENFP-IGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNL 151 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTSC-CCCSTTCC-CTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTC
T ss_pred cCCCEEECCCCccCccChhhh-cCCccccEEECCCCC-ccccCchh-cccCCCCCEEECcCCccceecCc-hhhccCCCC
Confidence 689999999997765443323 468999999999884 33221111 34688999999998865431100 012357888
Q ss_pred ceecCC
Q 025644 86 NDVEGD 91 (250)
Q Consensus 86 ~~L~~~ 91 (250)
++|+..
T Consensus 152 ~~L~Ls 157 (276)
T 2z62_A 152 EHLDLS 157 (276)
T ss_dssp CEEECC
T ss_pred CEEECC
Confidence 887543
No 123
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=95.30 E-value=0.0016 Score=57.28 Aligned_cols=62 Identities=10% Similarity=0.071 Sum_probs=46.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCc
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSN 71 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~d 71 (250)
.+|+.|+|++|.|++..-..+ .++++|++|+|++|. ++ .+..-..++++|++|+++++..++
T Consensus 217 ~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNK-LS--RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp TTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSC-CC--BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCc-Ce--ecChhhhcCccCCEEECCCCCCCc
Confidence 689999999997665432222 478999999999984 65 222224679999999999997654
No 124
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=95.29 E-value=0.0023 Score=61.51 Aligned_cols=34 Identities=12% Similarity=0.347 Sum_probs=14.2
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC 41 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C 41 (250)
+|++|+|++|.|+...-..+ .+|++|++|+|++|
T Consensus 74 ~L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 74 MLKVLNLQHNELSQLSDKTF-AFCTNLTELHLMSN 107 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTT-TTCTTCSEEECCSS
T ss_pred CcCEEECCCCccCccChhhh-ccCCCCCEEECCCC
Confidence 45555555553332111111 23455555555554
No 125
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=95.27 E-value=0.0064 Score=59.03 Aligned_cols=82 Identities=9% Similarity=0.075 Sum_probs=46.1
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCH----HHHHHHH--HhCCCCCEEecCCCCCCcHHHHHHHh
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITA----AGVSEFL--LHCHSLETLRCGGSPRSNHAARRCLG 79 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD----~gl~~La--~~C~~L~~L~l~gC~~~dd~al~~l~ 79 (250)
.+|++|+|++|.++..-- ..-.++++|++|||++|..++. .++..+. ..|++|++|++++|..+.-.....+
T Consensus 249 ~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l- 326 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL- 326 (636)
T ss_dssp TTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH-
T ss_pred CCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh-
Confidence 568888888884432111 1123577888888888865776 2232221 2467888888888755421000011
Q ss_pred hhCCCCceec
Q 025644 80 ILKPKLNDVE 89 (250)
Q Consensus 80 ~~cp~L~~L~ 89 (250)
..+++|+.|+
T Consensus 327 ~~l~~L~~L~ 336 (636)
T 4eco_A 327 QKMKKLGMLE 336 (636)
T ss_dssp TTCTTCCEEE
T ss_pred ccCCCCCEEe
Confidence 2466777764
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=95.14 E-value=0.01 Score=57.89 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=25.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~ 69 (250)
.+|++|+|++|+|+. +- ..+++|++|+|++| +|+. |.. -+.+|++|+++++..
T Consensus 80 ~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N-~l~~--ip~---l~~~L~~L~Ls~N~l 132 (571)
T 3cvr_A 80 PQITVLEITQNALIS--LP---ELPASLEYLDACDN-RLST--LPE---LPASLKHLDVDNNQL 132 (571)
T ss_dssp TTCSEEECCSSCCSC--CC---CCCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSCC
T ss_pred CCCCEEECcCCCCcc--cc---cccCCCCEEEccCC-CCCC--cch---hhcCCCEEECCCCcC
Confidence 346666666664442 11 34566666666665 2332 211 112555555555543
No 127
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=95.14 E-value=0.002 Score=56.74 Aligned_cols=77 Identities=14% Similarity=0.037 Sum_probs=41.1
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCc
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 86 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~ 86 (250)
+|+.|+|++|.++...-..+. .++ |++|+|++|. +++. +.....++++|++|+++++..+.... . ...+++|+
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~-~l~-L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~--~-~~~l~~L~ 247 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFA-NLN-LAFVDLSRNM-LEGD-ASVLFGSDKNTQKIHLAKNSLAFDLG--K-VGLSKNLN 247 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGG-GCC-CSEEECCSSE-EEEC-CGGGCCTTSCCSEEECCSSEECCBGG--G-CCCCTTCC
T ss_pred cCcEEECcCCeeeccCChHHh-CCc-ccEEECcCCc-ccCc-CCHHHhcCCCCCEEECCCCceeeecC--c-ccccCCCC
Confidence 678888888754432222222 233 7777777763 4332 11222457777777777775442211 0 23456777
Q ss_pred eecC
Q 025644 87 DVEG 90 (250)
Q Consensus 87 ~L~~ 90 (250)
+|+.
T Consensus 248 ~L~L 251 (313)
T 1ogq_A 248 GLDL 251 (313)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7643
No 128
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.12 E-value=0.0033 Score=50.77 Aligned_cols=59 Identities=12% Similarity=0.176 Sum_probs=27.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHH-HHHhCCCCCEEecCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSE-FLLHCHSLETLRCGGSP 68 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~-La~~C~~L~~L~l~gC~ 68 (250)
.+|++|+|++++|+...-. .-.++++|++|||+++. |+. +.. +-.++++|++|+++++.
T Consensus 30 ~~l~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~--l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQ-LTV--LPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSC-CCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcEEEcCCCcCCccChh-hhcCcccCCEEECCCCC-cCc--cChhhccCCCCCCEEECCCCc
Confidence 4556666666643321111 11245566666666652 331 111 11345666666666553
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=95.11 E-value=0.0036 Score=52.53 Aligned_cols=101 Identities=9% Similarity=-0.006 Sum_probs=62.0
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|+++.|+...-.. -.++++|++|+|+++. |+.-.-. ...++++|++|+++++....-.. ..-..+++|
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L 131 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGA-FEGASGVNEILLTSNR-LENVQHK-MFKGLESLKTLMLRSNRITCVGN--DSFIGLSSV 131 (220)
T ss_dssp TTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSC-CCCCCGG-GGTTCSSCCEEECTTSCCCCBCT--TSSTTCTTC
T ss_pred CCCCEEECCCCcCCEECHHH-hCCCCCCCEEECCCCc-cCccCHh-HhcCCcCCCEEECCCCcCCeECH--hHcCCCccC
Confidence 68999999999776533222 2468999999999984 4432211 22578999999999996543210 011357888
Q ss_pred ceecCCc--hhhhhhhccccccccccccc
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFV 112 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~ 112 (250)
+.|+... +..+....+ .++++|+.|+
T Consensus 132 ~~L~L~~N~l~~~~~~~~-~~l~~L~~L~ 159 (220)
T 2v70_A 132 RLLSLYDNQITTVAPGAF-DTLHSLSTLN 159 (220)
T ss_dssp SEEECTTSCCCCBCTTTT-TTCTTCCEEE
T ss_pred CEEECCCCcCCEECHHHh-cCCCCCCEEE
Confidence 8875432 222211112 3456777764
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.64 E-value=0.0084 Score=52.85 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=11.0
Q ss_pred CCHHHHHHHHhcCCCCCeEecCC
Q 025644 18 VSDFGLVKVAQMCKSLKAVDISC 40 (250)
Q Consensus 18 ITD~gL~~la~~C~~L~~LdLS~ 40 (250)
+.......+...|++|+.|+|++
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISK 235 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTT
T ss_pred ecHHHHHHHHHhcCCCeEEECCC
Confidence 33444444444455555555554
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=94.63 E-value=0.0057 Score=49.71 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=33.8
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHH-HHHhCCCCCEEecCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSE-FLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~-La~~C~~L~~L~l~gC~~ 69 (250)
.+|+.|+|++++|+...- ..-.++++|++|+|+++ +|+. +.. +..++++|++|+++++..
T Consensus 33 ~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~--i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSN-KLTA--IPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCC--CCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCC-CCCc--cChhHhCCcchhhEEECCCCcc
Confidence 567777777775443211 11235677777777776 3443 111 124567777777777643
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.55 E-value=0.015 Score=51.14 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=16.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC 41 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C 41 (250)
.+|+.|+|.. .|+.-+-.+ -.+|++|+.|+|+..
T Consensus 101 ~~L~~l~L~~-~i~~I~~~a-F~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAA-FKGCDNLKICQIRKK 134 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTT-TTTCTTCCEEEBCCS
T ss_pred CCCcEEECCc-cccchhHHH-hhcCcccceEEcCCC
Confidence 4566666665 332211111 135677777776554
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=94.36 E-value=0.0057 Score=48.90 Aligned_cols=80 Identities=9% Similarity=-0.022 Sum_probs=53.0
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|.|+...- ..-.++++|++|+|+++. |+.-.- ....++++|++|+++++..+.-. ..+-..+++|
T Consensus 52 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L 126 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENK-LQSLPN-GVFDKLTQLKELALDTNQLKSVP--DGIFDRLTSL 126 (177)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTC
T ss_pred ccccEEECCCCcceEeCh-hHccCCCccCEEECCCCC-ccccCH-HHhhCCcccCEEECcCCcceEeC--HHHhcCCccc
Confidence 689999999996663221 122478999999999984 552211 12356899999999999654321 1122457888
Q ss_pred ceecC
Q 025644 86 NDVEG 90 (250)
Q Consensus 86 ~~L~~ 90 (250)
++|..
T Consensus 127 ~~L~l 131 (177)
T 2o6r_A 127 QKIWL 131 (177)
T ss_dssp CEEEC
T ss_pred CEEEe
Confidence 88744
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=94.27 E-value=0.0086 Score=48.26 Aligned_cols=63 Identities=11% Similarity=0.099 Sum_probs=44.7
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCc
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSN 71 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~d 71 (250)
.+|++|+|++++|+...- .+-.++++|++|+|+++. |+.-.- ....++++|++|++++.+...
T Consensus 54 ~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 54 TQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDNQ-LKSIPR-GAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCBCT
T ss_pred ccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCCc-cCEeCH-HHhcCCCCCCEEEeCCCCCCC
Confidence 689999999997663211 122578999999999984 552111 123578999999999987643
No 135
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=94.26 E-value=0.0068 Score=53.00 Aligned_cols=76 Identities=20% Similarity=0.214 Sum_probs=46.6
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+++.|+|+++.|+...-..+ .++++|++|+|+++. |+.-... .++++|++|+++++....-. .....+++|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~---~~l~~L~~L~Ls~N~l~~l~---~~~~~l~~L 102 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAE-LTKLQVD---GTLPVLGTLDLSHNQLQSLP---LLGQTLPAL 102 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGG-TTCTTCCEEECTTSC-CCEEECC---SCCTTCCEEECCSSCCSSCC---CCTTTCTTC
T ss_pred CCCCEEEcCCCcCCccCHHHh-hcCCCCCEEECCCCc-cCcccCC---CCCCcCCEEECCCCcCCcCc---hhhccCCCC
Confidence 578888888886665433222 357888888888874 5542221 57788888888887543211 112346677
Q ss_pred ceec
Q 025644 86 NDVE 89 (250)
Q Consensus 86 ~~L~ 89 (250)
+.|.
T Consensus 103 ~~L~ 106 (290)
T 1p9a_G 103 TVLD 106 (290)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7763
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=94.20 E-value=0.0077 Score=49.64 Aligned_cols=100 Identities=13% Similarity=-0.040 Sum_probs=61.5
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++++|+... ....++++|++|||+++. |+.-.-. .-.++++|++|+++++..+.-.. ..-..+++|
T Consensus 31 ~~l~~L~L~~n~i~~ip--~~~~~l~~L~~L~Ls~N~-i~~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~--~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP--KELSNYKHLTLIDLSNNR-ISTLSNQ-SFSNMTQLLTLILSYNRLRCIPP--RTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSSCCCSCC--GGGGGCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTC
T ss_pred CCCCEEECCCCcCchhH--HHhhcccCCCEEECCCCc-CCEeCHh-HccCCCCCCEEECCCCccCEeCH--HHhCCCCCC
Confidence 58999999999776432 234679999999999984 5532211 12478999999999996543210 011357888
Q ss_pred ceecCCc--hhhhhhhccccccccccccc
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFV 112 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~ 112 (250)
+.|+... +..+... .-.++.+|+.|.
T Consensus 105 ~~L~L~~N~l~~~~~~-~~~~l~~L~~L~ 132 (193)
T 2wfh_A 105 RLLSLHGNDISVVPEG-AFNDLSALSHLA 132 (193)
T ss_dssp CEEECCSSCCCBCCTT-TTTTCTTCCEEE
T ss_pred CEEECCCCCCCeeChh-hhhcCccccEEE
Confidence 8875432 2211111 113456677764
No 137
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=94.19 E-value=0.036 Score=53.71 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=47.0
Q ss_pred CCcCEEEccCCC-CCH----HHHHHHH--hcCCCCCeEecCCCCCcCHHHHHH--HHHhCCCCCEEecCCCCCC
Q 025644 6 SSWEILDISGSD-VSD----FGLVKVA--QMCKSLKAVDISCCDRITAAGVSE--FLLHCHSLETLRCGGSPRS 70 (250)
Q Consensus 6 ~~L~~LnLsgC~-ITD----~gL~~la--~~C~~L~~LdLS~C~~ITD~gl~~--La~~C~~L~~L~l~gC~~~ 70 (250)
.+|++|+|++|. ++. .++..+. .++++|++|+|++|. ++ .+.. ...++++|++|++++|...
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~--~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK--TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS--SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC--ccCchhhhccCCCCCEEeCcCCcCc
Confidence 689999999995 998 3333332 357999999999984 66 4544 5567899999999998655
No 138
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=94.13 E-value=0.008 Score=50.34 Aligned_cols=114 Identities=13% Similarity=0.057 Sum_probs=66.6
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++|+|+...-.. -.++++|++|+|+++. |+.-. ..+..++++|++|+++++....-.. ..-..+++|
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L 130 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGNK-ITELP-KSLFEGLFSLQLLLLNANKINCLRV--DAFQDLHNL 130 (220)
T ss_dssp TTCCEEECCSSCCCEECTTT-TTTCSSCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTC
T ss_pred CCCCEEECCCCcCCCcCHHH-hhCCcCCCEEECCCCc-CCccC-HhHccCCCCCCEEECCCCCCCEeCH--HHcCCCCCC
Confidence 68999999999776432222 2468999999999984 55211 1123578999999999996543210 012357888
Q ss_pred ceecCCc--hhhhhhhcccccccccccccc---CCCCHHHHHHHH
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFVW---PNIDKDSIEMMS 125 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c---~~ITD~sL~~La 125 (250)
+.|+... +..+....+ .++.+|+.|+. +...|..+..+.
T Consensus 131 ~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~~~c~c~l~~l~ 174 (220)
T 2v9t_B 131 NLLSLYDNKLQTIAKGTF-SPLRAIQTMHLAQNPFICDCHLKWLA 174 (220)
T ss_dssp CEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred CEEECCCCcCCEECHHHH-hCCCCCCEEEeCCCCcCCCCccHHHH
Confidence 8874432 222221111 34566666642 233344444444
No 139
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=94.13 E-value=0.011 Score=49.75 Aligned_cols=79 Identities=13% Similarity=0.057 Sum_probs=54.0
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|+|+...- .+-.++++|++|+|+++. |+ .+..-..++++|++|+++++....-.. ..-..+++|
T Consensus 88 ~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L 161 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNK-LT--ELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSL 161 (229)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CC--SCCTTGGGCTTCSEEECCSSCCCCCCT--TTTTTCTTC
T ss_pred CCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCc-cc--ccCcccccCCCCCEEECCCCcCCccCH--HHHhCCCCC
Confidence 689999999997763221 123478999999999984 65 232223789999999999996543210 112356788
Q ss_pred ceecC
Q 025644 86 NDVEG 90 (250)
Q Consensus 86 ~~L~~ 90 (250)
+.|..
T Consensus 162 ~~L~l 166 (229)
T 3e6j_A 162 THAYL 166 (229)
T ss_dssp CEEEC
T ss_pred CEEEe
Confidence 88743
No 140
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=94.10 E-value=0.022 Score=53.12 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=14.3
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC 41 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C 41 (250)
+|++|+|++|.++. +.. -.++++|++|++++|
T Consensus 174 ~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 174 SLEFIAAGNNQLEE--LPE-LQNLPFLTAIYADNN 205 (454)
T ss_dssp TCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSS
T ss_pred cccEEECcCCcCCc--Ccc-ccCCCCCCEEECCCC
Confidence 45555555553332 111 133444555555444
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=94.07 E-value=0.014 Score=48.10 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=37.3
Q ss_pred CEEEccCCCCCHHHHHHHHh-cCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCce
Q 025644 9 EILDISGSDVSDFGLVKVAQ-MCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLND 87 (250)
Q Consensus 9 ~~LnLsgC~ITD~gL~~la~-~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~~ 87 (250)
+.+++++++|+. |.. -.++|++|+|+++ +|+. +.....++++|++|+++++..++-.. ..-..+++|+.
T Consensus 13 ~~l~~~~~~l~~-----ip~~~~~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~--~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGLKV-----LPKGIPRDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNRISTLSN--QSFSNMTQLLT 82 (193)
T ss_dssp TEEECTTSCCSS-----CCSCCCTTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSCCCCCCT--TTTTTCTTCCE
T ss_pred CEEEcCCCCCCc-----CCCCCCCCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCcCCEeCH--hHccCCCCCCE
Confidence 456666664442 111 2356777777776 3442 21233567777777777775433210 01124566776
Q ss_pred ec
Q 025644 88 VE 89 (250)
Q Consensus 88 L~ 89 (250)
|.
T Consensus 83 L~ 84 (193)
T 2wfh_A 83 LI 84 (193)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 142
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=93.89 E-value=0.003 Score=55.58 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=41.6
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCC-CCCEEecCCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCH-SLETLRCGGSPRS 70 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~-~L~~L~l~gC~~~ 70 (250)
.+|++|+|++|.|+...-.. ...+++|++|+|++|. ++...-..+. .++ +|++|+++++..+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~-l~~~~p~~l~-~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNR-ISGAIPDSYG-SFSKLFTSMTISRNRLT 187 (313)
T ss_dssp TTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSC-CEEECCGGGG-CCCTTCCEEECCSSEEE
T ss_pred CCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCc-ccCcCCHHHh-hhhhcCcEEECcCCeee
Confidence 68999999999555321111 2468999999999985 5532222333 344 8999999998543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=93.77 E-value=0.014 Score=47.37 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=44.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHH-HHHHhCCCCCEEecCCCCCCc
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVS-EFLLHCHSLETLRCGGSPRSN 71 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~-~La~~C~~L~~L~l~gC~~~d 71 (250)
.+|++|+|++++|+..-- .+-.++++|++|||+++. |+. +. ....++++|++|++++.+...
T Consensus 57 ~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~-l~~--l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 57 VNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLNDNH-LKS--IPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCC--CCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cCCCEEECCCCCCCccCh-hHhCCcchhhEEECCCCc-cce--eCHHHhccccCCCEEEeCCCCccc
Confidence 689999999997664211 123578999999999974 552 21 123568999999999987543
No 144
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=93.68 E-value=0.0097 Score=49.82 Aligned_cols=102 Identities=13% Similarity=0.046 Sum_probs=63.8
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|++++|+...-. .-.++++|++|+|+++. |+.-.-.. ..++++|++|+++++..+.-. ..+-..+++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~-~~~~l~~L~~L~Ls~N~-i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~--~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQ-ISELAPDA-FQGLRSLNSLVLYGNKITELP--KSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEECTT-SSTTCTTCCEEECCSSC-CCEECTTT-TTTCSSCCEEECCSSCCCCCC--TTTTTTCTTC
T ss_pred cCCCEEECCCCcCCCcCHh-HhhCCCCCCEEECCCCc-CCCcCHHH-hhCCcCCCEEECCCCcCCccC--HhHccCCCCC
Confidence 5899999999977643222 22468999999999984 55321111 246899999999999654321 0122457889
Q ss_pred ceecCCc--hhhhhhhcccccccccccccc
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFVW 113 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c 113 (250)
+.|+... +..+....+ .++.+|++|+.
T Consensus 107 ~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L 135 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAF-QDLHNLNLLSL 135 (220)
T ss_dssp CEEECCSSCCCCCCTTTT-TTCTTCCEEEC
T ss_pred CEEECCCCCCCEeCHHHc-CCCCCCCEEEC
Confidence 9885433 222211111 35677888764
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=93.37 E-value=0.0081 Score=49.14 Aligned_cols=102 Identities=8% Similarity=-0.001 Sum_probs=61.3
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|+.|+|+++.|+...-..+...+++|++|+|+++. |+.-.- ....++++|++|+++++..+.-.. ..-..+++|
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L 104 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP-NAFEGASHIQELQLGENKIKEISN--KMFLGLHQL 104 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEECCSCCCCEECS--SSSTTCTTC
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCH-hHcCCcccCCEEECCCCcCCccCH--HHhcCCCCC
Confidence 4899999999966543322234678999999999984 553211 123468999999999996544310 011347888
Q ss_pred ceecCCc--hhhhhhhccccccccccccc
Q 025644 86 NDVEGDS--WEELVNTDIGHGAQSLRWFV 112 (250)
Q Consensus 86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~ 112 (250)
++|+... +..+....+ ....+|++|+
T Consensus 105 ~~L~L~~N~l~~~~~~~~-~~l~~L~~L~ 132 (192)
T 1w8a_A 105 KTLNLYDNQISCVMPGSF-EHLNSLTSLN 132 (192)
T ss_dssp CEEECCSSCCCEECTTSS-TTCTTCCEEE
T ss_pred CEEECCCCcCCeeCHHHh-hcCCCCCEEE
Confidence 8874432 222111111 3455677764
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=93.37 E-value=0.012 Score=58.59 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=31.8
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~ 69 (250)
.+|++|+|++|.|+ .+-.-..++++|++|||+++. |+ .|-.-..++++|++|+|+++.+
T Consensus 247 ~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPAELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp CSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CS--SCCSSGGGGTTCSEEECCSSCC
T ss_pred CCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CC--ccChhhcCCCCCCEEECCCCCC
Confidence 45667777776554 121112456667777777663 44 2222224566666666666643
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=93.36 E-value=0.0094 Score=48.75 Aligned_cols=37 Identities=5% Similarity=-0.053 Sum_probs=19.0
Q ss_pred CCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644 32 SLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 69 (250)
Q Consensus 32 ~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~ 69 (250)
+|++|+++++ +|+.-.-..+..++++|++|+++++..
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l 66 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQL 66 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCC
Confidence 5666666665 243222111234566666666666643
No 148
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=92.00 E-value=0.061 Score=52.44 Aligned_cols=13 Identities=8% Similarity=0.043 Sum_probs=6.2
Q ss_pred cCCCCCeEecCCC
Q 025644 29 MCKSLKAVDISCC 41 (250)
Q Consensus 29 ~C~~L~~LdLS~C 41 (250)
.+++|++|+|+++
T Consensus 138 ~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 138 LPALLEYINADNN 150 (571)
T ss_dssp CCTTCCEEECCSS
T ss_pred cCccccEEeCCCC
Confidence 3444555555444
No 149
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=91.94 E-value=0.062 Score=50.09 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=45.2
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 85 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L 85 (250)
.+|++|+|++|.++. +....++|++|+++++. ++. +...+++|++|++++|..+.- ...+++|
T Consensus 297 ~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~-l~~-----lp~~~~~L~~L~L~~N~l~~l------p~~l~~L 359 (454)
T 1jl5_A 297 PNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNK-LIE-----LPALPPRLERLIASFNHLAEV------PELPQNL 359 (454)
T ss_dssp TTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSCCSCC------CCCCTTC
T ss_pred CcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCc-ccc-----ccccCCcCCEEECCCCccccc------cchhhhc
Confidence 466777777775554 22223589999999974 553 333478999999999965531 2257788
Q ss_pred ceecCC
Q 025644 86 NDVEGD 91 (250)
Q Consensus 86 ~~L~~~ 91 (250)
++|+..
T Consensus 360 ~~L~L~ 365 (454)
T 1jl5_A 360 KQLHVE 365 (454)
T ss_dssp CEEECC
T ss_pred cEEECC
Confidence 887543
No 150
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=91.79 E-value=0.011 Score=49.27 Aligned_cols=75 Identities=8% Similarity=-0.070 Sum_probs=46.9
Q ss_pred EEEccCC-CCCHHHHHHHHhcCCCCC-eEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC-CCcHHHHHHHhhhC-CCC
Q 025644 10 ILDISGS-DVSDFGLVKVAQMCKSLK-AVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP-RSNHAARRCLGILK-PKL 85 (250)
Q Consensus 10 ~LnLsgC-~ITD~gL~~la~~C~~L~-~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~-~~dd~al~~l~~~c-p~L 85 (250)
+|+|++| .|+...-..+ .++++|+ +|+++++. ++.-.-.. ... ++|+.|++++++ ..+-. - ..-..+ ++|
T Consensus 134 ~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n~-l~~i~~~~-~~~-~~L~~L~L~~n~~l~~i~-~-~~~~~l~~~L 207 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNNG-FTSVQGYA-FNG-TKLDAVYLNKNKYLTVID-K-DAFGGVYSGP 207 (239)
T ss_dssp EEEEESCTTCCEECTTTT-TTTBSSEEEEECCSCC-CCEECTTT-TTT-CEEEEEECTTCTTCCEEC-T-TTTTTCSBCC
T ss_pred EEECCCCcchhhcCcccc-cchhcceeEEEcCCCC-CcccCHhh-cCC-CCCCEEEcCCCCCcccCC-H-HHhhccccCC
Confidence 9999999 8876433222 3689999 99999874 55322111 122 789999999995 44321 0 111245 788
Q ss_pred ceecC
Q 025644 86 NDVEG 90 (250)
Q Consensus 86 ~~L~~ 90 (250)
+.|+.
T Consensus 208 ~~L~l 212 (239)
T 2xwt_C 208 SLLDV 212 (239)
T ss_dssp SEEEC
T ss_pred cEEEC
Confidence 88744
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=89.18 E-value=0.076 Score=46.59 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=38.2
Q ss_pred CCcCEEEccC-CCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCC
Q 025644 6 SSWEILDISG-SDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS 70 (250)
Q Consensus 6 ~~L~~LnLsg-C~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~ 70 (250)
.+|+.|+|++ +.|+..--. .-.++++|++|||+++ +|+.--- ..-.++++|+.|+|++..++
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp SCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEECCSSCCS
T ss_pred CCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCC-ccceeCH-HHhcCCcCCCEEeCCCCccc
Confidence 4688888886 555432111 1236888888888887 3543111 12246888888888887543
No 152
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=87.51 E-value=0.047 Score=48.54 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=37.5
Q ss_pred CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCC
Q 025644 7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS 70 (250)
Q Consensus 7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~ 70 (250)
.++.|+|++++|+.. ..-+....+|+.|+++++.+++.-.-. +-.++++|++|+++++..+
T Consensus 155 ~l~~L~L~~N~i~~i--~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 155 ESVILWLNKNGIQEI--HNSAFNGTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCEEEECCSSCCCEE--CTTSSTTEEEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTSCCC
T ss_pred hhhhhccccccccCC--ChhhccccchhHHhhccCCcccCCCHH-HhccCcccchhhcCCCCcC
Confidence 467788888766532 112224567888888877666542211 1246788888888887543
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=84.63 E-value=0.19 Score=44.01 Aligned_cols=62 Identities=18% Similarity=0.137 Sum_probs=41.9
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHH-HHHhCCCCCEEecCCCCCCcH
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSE-FLLHCHSLETLRCGGSPRSNH 72 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~-La~~C~~L~~L~l~gC~~~dd 72 (250)
.+|+.|+|++|+|+..--. .-.++++|++|||++.. ++. +.. +.... .|+.|++.+.+...+
T Consensus 56 ~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~--~~~~~~~~~-~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 56 GELRNLTIVKSGLRFVAPD-AFHFTPRLSRLNLSFNA-LES--LSWKTVQGL-SLQELVLSGNPLHCS 118 (347)
T ss_dssp CCCSEEECCSSCCCEECTT-GGGSCSCCCEEECCSSC-CSC--CCSTTTCSC-CCCEEECCSSCCCCC
T ss_pred cCCCEEECCCCccceeCHH-HhcCCcCCCEEeCCCCc-cce--eCHHHcccC-CceEEEeeCCCccCC
Confidence 7899999999966642111 22579999999999974 542 111 11223 399999998876544
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=70.11 E-value=0.89 Score=41.84 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=7.4
Q ss_pred cCCCCCeEecCC
Q 025644 29 MCKSLKAVDISC 40 (250)
Q Consensus 29 ~C~~L~~LdLS~ 40 (250)
+|++|+.++|+.
T Consensus 178 ~c~~L~~l~l~~ 189 (401)
T 4fdw_A 178 YCYNLKKADLSK 189 (401)
T ss_dssp TCTTCCEEECTT
T ss_pred CcccCCeeecCC
Confidence 566666666654
No 155
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=66.97 E-value=0.22 Score=44.13 Aligned_cols=36 Identities=14% Similarity=-0.028 Sum_probs=25.8
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCC
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCD 42 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~ 42 (250)
.+++.|+|++++|+.-.-. .-.++++|++|||+++.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQND 65 (350)
T ss_dssp TTCSEEEEESCCCSEECTT-SSTTCTTCCEEEEECCT
T ss_pred CCCCEEEccCCcCCCcCHH-HHcCCCCCCEEECcCCC
Confidence 5789999999876632111 12468899999999885
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=60.44 E-value=3.4 Score=32.04 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=18.8
Q ss_pred CCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCC
Q 025644 32 SLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS 70 (250)
Q Consensus 32 ~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~ 70 (250)
+|++|||++.. |+.-.- .+-.+.++|++|+|+|.+..
T Consensus 32 ~l~~L~Ls~N~-l~~l~~-~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPP-GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSC-CSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCc-CCccCh-hhhhhccccCEEEecCCCee
Confidence 46666666652 322111 11234566777777666543
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=54.41 E-value=4.2 Score=36.36 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=47.1
Q ss_pred HhcCCCCCeEecCCC-CCcCHHHHHHHHHhCCCCCEEecCCC-CCCcHHHHHHHhhhCCCCceecCC-chhhhhhhcccc
Q 025644 27 AQMCKSLKAVDISCC-DRITAAGVSEFLLHCHSLETLRCGGS-PRSNHAARRCLGILKPKLNDVEGD-SWEELVNTDIGH 103 (250)
Q Consensus 27 a~~C~~L~~LdLS~C-~~ITD~gl~~La~~C~~L~~L~l~gC-~~~dd~al~~l~~~cp~L~~L~~~-s~~dl~~~~i~~ 103 (250)
..+|.+|+.+++..- ..|.+.+ -.+|.+|+.+++..- ..+.+.+ =..|.+|+.++.. ++..+..-+. .
T Consensus 293 F~~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp~~l~~I~~~aF-~ 363 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFPLSLRKIGANAF-Q 363 (394)
T ss_dssp TTTCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCCTTCCEECTTTB-T
T ss_pred ccccccccccccccccceechhh----hcCCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEECccccEehHHHh-h
Confidence 346778888877542 1122221 246778888877432 2222221 1347777776442 2222221112 5
Q ss_pred ccccccccccCC-CCHHHHHHHHhcCCCcee
Q 025644 104 GAQSLRWFVWPN-IDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 104 g~~~L~~L~c~~-ITD~sL~~La~~Cp~L~~ 133 (250)
||.+|+.+..|. ++.- ..--.+|+.|+.
T Consensus 364 ~C~~L~~i~lp~~~~~~--~~~F~~c~~L~~ 392 (394)
T 4fs7_A 364 GCINLKKVELPKRLEQY--RYDFEDTTKFKW 392 (394)
T ss_dssp TCTTCCEEEEEGGGGGG--GGGBCTTCEEEE
T ss_pred CCCCCCEEEECCCCEEh--hheecCCCCCcE
Confidence 677777776542 2111 111236777664
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=49.98 E-value=6.3 Score=36.09 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=61.4
Q ss_pred CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCC-CCcCHHHHHHHHHhCCCCCEEecCCCCC-------CcHHHHHH
Q 025644 6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC-DRITAAGVSEFLLHCHSLETLRCGGSPR-------SNHAARRC 77 (250)
Q Consensus 6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C-~~ITD~gl~~La~~C~~L~~L~l~gC~~-------~dd~al~~ 77 (250)
.+|+.|+|... |+.-|-.++.. .+|+.++|..- ..|.+.. -.+|++|+.+.+.+... +.+.
T Consensus 226 ~~L~~l~l~~~-l~~I~~~aF~~--~~L~~i~lp~~i~~I~~~a----F~~c~~L~~l~l~~~~~~~~~~~~I~~~---- 294 (401)
T 4fdw_A 226 SQLKTIEIPEN-VSTIGQEAFRE--SGITTVKLPNGVTNIASRA----FYYCPELAEVTTYGSTFNDDPEAMIHPY---- 294 (401)
T ss_dssp TTCCCEECCTT-CCEECTTTTTT--CCCSEEEEETTCCEECTTT----TTTCTTCCEEEEESSCCCCCTTCEECTT----
T ss_pred CCCCEEecCCC-ccCcccccccc--CCccEEEeCCCccEEChhH----hhCCCCCCEEEeCCccccCCcccEECHH----
Confidence 47888888774 33323233333 47899988542 1222222 25789999998876532 2221
Q ss_pred HhhhCCCCceecCCc-hhhhhhhccccccccccccccC-CCCHHHHHHHHhcCCCcee
Q 025644 78 LGILKPKLNDVEGDS-WEELVNTDIGHGAQSLRWFVWP-NIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 78 l~~~cp~L~~L~~~s-~~dl~~~~i~~g~~~L~~L~c~-~ITD~sL~~La~~Cp~L~~ 133 (250)
.-..|++|+.+.... ++.+..-+. .||.+|+.+..| +|+.-+-.++. +| +|+.
T Consensus 295 aF~~c~~L~~l~l~~~i~~I~~~aF-~~c~~L~~l~lp~~l~~I~~~aF~-~~-~L~~ 349 (401)
T 4fdw_A 295 CLEGCPKLARFEIPESIRILGQGLL-GGNRKVTQLTIPANVTQINFSAFN-NT-GIKE 349 (401)
T ss_dssp TTTTCTTCCEECCCTTCCEECTTTT-TTCCSCCEEEECTTCCEECTTSSS-SS-CCCE
T ss_pred HhhCCccCCeEEeCCceEEEhhhhh-cCCCCccEEEECccccEEcHHhCC-CC-CCCE
Confidence 124588888875432 222221111 567788887654 23322222332 67 7776
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=46.26 E-value=13 Score=33.06 Aligned_cols=113 Identities=10% Similarity=0.127 Sum_probs=57.0
Q ss_pred CCcCEEEccCC--CCCHHHHHHHHhcCCCCCeEecCCC-CCcCHHHHHHHHHhCCCCCEEecCCC-CCCcHHHHHHHhhh
Q 025644 6 SSWEILDISGS--DVSDFGLVKVAQMCKSLKAVDISCC-DRITAAGVSEFLLHCHSLETLRCGGS-PRSNHAARRCLGIL 81 (250)
Q Consensus 6 ~~L~~LnLsgC--~ITD~gL~~la~~C~~L~~LdLS~C-~~ITD~gl~~La~~C~~L~~L~l~gC-~~~dd~al~~l~~~ 81 (250)
.+|+.+++... .|.+.. -.+|+.|+.+++..- ..|.+.. -.+|.+|+.+.+..- ..+.+.+ =..
T Consensus 265 ~~L~~i~lp~~~~~I~~~a----F~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~a----F~~ 332 (394)
T 4gt6_A 265 AYLASVKMPDSVVSIGTGA----FMNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEGITQILDDA----FAG 332 (394)
T ss_dssp SSCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTT----TTT
T ss_pred ccccEEecccccceecCcc----cccccccccccCCCcccccCcee----ecCCCCcCEEEeCCcccEehHhH----hhC
Confidence 45777777654 333322 246888888888632 1233322 246888888888532 3233321 135
Q ss_pred CCCCceecCC-chhhhhhhccccccccccccccCCCCHHHHHHHHhcCCCcee
Q 025644 82 KPKLNDVEGD-SWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIV 133 (250)
Q Consensus 82 cp~L~~L~~~-s~~dl~~~~i~~g~~~L~~L~c~~ITD~sL~~La~~Cp~L~~ 133 (250)
|.+|+.+..- +++.+..-+. .+|.+|+.+..+. +.....++ ..|..|+.
T Consensus 333 C~~L~~i~ip~sv~~I~~~aF-~~C~~L~~i~~~~-~~~~~~~~-~~~~~L~~ 382 (394)
T 4gt6_A 333 CEQLERIAIPSSVTKIPESAF-SNCTALNNIEYSG-SRSQWNAI-STDSGLQN 382 (394)
T ss_dssp CTTCCEEEECTTCCBCCGGGG-TTCTTCCEEEESS-CHHHHHTC-BCCCCC--
T ss_pred CCCCCEEEECcccCEEhHhHh-hCCCCCCEEEECC-ceeehhhh-hccCCCCE
Confidence 7788876432 2222221112 5677777776543 11222222 35666655
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=40.41 E-value=12 Score=33.30 Aligned_cols=74 Identities=22% Similarity=0.261 Sum_probs=48.3
Q ss_pred CCcCEEEccCC--CCCHHHHHHHHhcCCCCCeEecCCC-CCcCHHHHHHHHHhCCCCCEEecCCC-CCCcHHHHHHHhhh
Q 025644 6 SSWEILDISGS--DVSDFGLVKVAQMCKSLKAVDISCC-DRITAAGVSEFLLHCHSLETLRCGGS-PRSNHAARRCLGIL 81 (250)
Q Consensus 6 ~~L~~LnLsgC--~ITD~gL~~la~~C~~L~~LdLS~C-~~ITD~gl~~La~~C~~L~~L~l~gC-~~~dd~al~~l~~~ 81 (250)
.+|+.+++... .|.+.. -.+|.+|+.++|..- ..|.+... .+|.+|+.+.+..- ..+.+.+ =..
T Consensus 288 ~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~aF----~~C~~L~~i~ip~sv~~I~~~a----F~~ 355 (394)
T 4gt6_A 288 PALQDIEFSSRITELPESV----FAGCISLKSIDIPEGITQILDDAF----AGCEQLERIAIPSSVTKIPESA----FSN 355 (394)
T ss_dssp TTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEEECTTCCBCCGGG----GTT
T ss_pred cccccccCCCcccccCcee----ecCCCCcCEEEeCCcccEehHhHh----hCCCCCCEEEECcccCEEhHhH----hhC
Confidence 67888888764 344432 357999999999642 23333322 57999999999543 4444432 246
Q ss_pred CCCCceecCC
Q 025644 82 KPKLNDVEGD 91 (250)
Q Consensus 82 cp~L~~L~~~ 91 (250)
|++|+.+...
T Consensus 356 C~~L~~i~~~ 365 (394)
T 4gt6_A 356 CTALNNIEYS 365 (394)
T ss_dssp CTTCCEEEES
T ss_pred CCCCCEEEEC
Confidence 9999988544
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=31.01 E-value=7.3 Score=34.25 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=46.8
Q ss_pred CCcCEEEccCC--CCCHHHHHHHHhcCCCCCeEecCCC--CCcCHHHHHHHHHhCCCCCEEecC-CCCCCcHHHHHHHhh
Q 025644 6 SSWEILDISGS--DVSDFGLVKVAQMCKSLKAVDISCC--DRITAAGVSEFLLHCHSLETLRCG-GSPRSNHAARRCLGI 80 (250)
Q Consensus 6 ~~L~~LnLsgC--~ITD~gL~~la~~C~~L~~LdLS~C--~~ITD~gl~~La~~C~~L~~L~l~-gC~~~dd~al~~l~~ 80 (250)
.+|+.+++... .|.+. .-.+|++|+.+++... ..|.+... .+|.+|+.+.+. +...+.+.+ =.
T Consensus 263 ~~l~~i~l~~~i~~i~~~----aF~~c~~L~~i~l~~~~i~~I~~~aF----~~c~~L~~i~lp~~l~~I~~~a----F~ 330 (379)
T 4h09_A 263 TALKTLNFYAKVKTVPYL----LCSGCSNLTKVVMDNSAIETLEPRVF----MDCVKLSSVTLPTALKTIQVYA----FK 330 (379)
T ss_dssp TTCCEEEECCCCSEECTT----TTTTCTTCCEEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTTT----TT
T ss_pred ehhccccccccceecccc----ccccccccccccccccccceehhhhh----cCCCCCCEEEcCccccEEHHHH----hh
Confidence 46778888664 33332 2358999999999764 23444332 579999999995 333333321 13
Q ss_pred hCCCCceecC
Q 025644 81 LKPKLNDVEG 90 (250)
Q Consensus 81 ~cp~L~~L~~ 90 (250)
.|.+|+.++.
T Consensus 331 ~C~~L~~i~i 340 (379)
T 4h09_A 331 NCKALSTISY 340 (379)
T ss_dssp TCTTCCCCCC
T ss_pred CCCCCCEEEE
Confidence 5889988754
Done!