BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025645
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus
Horikoshii
Length = 189
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 63 DGFVISGSP-YDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYT 121
G + SG P + GN +L + D +LGIC GHQ++ + GGKVG+
Sbjct: 45 KGIIFSGGPSLENTGNCEKVL------EHYDEFNVPILGICLGHQLIAKFFGGKVGR--- 95
Query: 122 GWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVPIGAEVIGFSDKTGVE 181
G V I F +P L + E H DEV ++P +++ S+ +E
Sbjct: 96 GEKAEYSLVEIEIIDEXEIF----KGLPKRLKVWESHMDEVKELPPKFKILARSETXPIE 151
Query: 182 MFTIGD-HILGIQGHPE 197
+ I G+Q HPE
Sbjct: 152 AMKHEELPIYGVQFHPE 168
>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase
From Pyrococcus Horikoshii Ot3
Length = 209
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 63 DGFVISGSP-YDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYT 121
G + SG P + GN +L + D +LGIC GHQ++ + GGKVG+
Sbjct: 65 KGIIFSGGPSLENTGNCEKVL------EHYDEFNVPILGICLGHQLIAKFFGGKVGR--- 115
Query: 122 GWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVPIGAEVIGFSDKTGVE 181
G + + ++ E +P L + E H DEV ++P +++ S+ +E
Sbjct: 116 ----GEKAEYSLVEIEIIDEDEIFKGLPKRLKVWESHMDEVKELPPKFKILARSETCPIE 171
Query: 182 MFTIGD-HILGIQGHPE 197
+ I G+Q HPE
Sbjct: 172 AMKHEELPIYGVQFHPE 188
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 19/180 (10%)
Query: 47 RVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQ 106
++V D D ++L DG V+SG A D + KL + + +D +LGIC G Q
Sbjct: 41 KIVPNDI-DSSELDGLDGLVLSGG---APNIDEELDKLGSVGKYIDDHNYPILGICVGAQ 96
Query: 107 VLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDL-GEIPGSLSIMECHRDEVWKV 165
+ G V KA + G +V + + E++ G +P +++ E H DE+ +
Sbjct: 97 FIALHFGASVVKAKHP-EFGKTKVSVXHS-------ENIFGGLPSEITVWENHNDEIINL 148
Query: 166 PIGAEVIGFSDKTGVEMFTIGDH-ILGIQGHPE-----YTKDILYNLIDRLLNNNSIERE 219
P + S V+ F I Q HPE Y +DI N I + I++E
Sbjct: 149 PDDFTLAASSATCQVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIGICASYREIQKE 208
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 16/160 (10%)
Query: 43 WDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102
WD V E DFN G ++SG P ++ +N ++ + V G+C
Sbjct: 39 WD---VTEAQIRDFNP----SGIILSGGP-ESTTEENSPRAPQYVFEA----GVPVFGVC 86
Query: 103 FGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGS--LSIMECHRD 160
+G Q + LGG V +A + G +V +VND A +ED G L + H D
Sbjct: 87 YGMQTMAMQLGGHV-EASNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGD 145
Query: 161 EVWKVPIGAEVIGFSDKTGVEMFTIGD-HILGIQGHPEYT 199
+V +P + ++ + + G+Q HPE T
Sbjct: 146 KVTAIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEVT 185
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 14/137 (10%)
Query: 62 YDGFVISGSPYDAYGND-NWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAY 120
+ +ISG P Y D W F + K VLGIC+G Q++ + GG V K
Sbjct: 73 FRAIIISGGPNSVYAEDAPWFDPAIF------TIGKPVLGICYGMQMMNKVFGGTVHKKS 126
Query: 121 TGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVPIGAEVIGFSDKTGV 180
D G+ + + N CS L + ++ H D V KV G +V+ S
Sbjct: 127 VRED-GVFNISVDNT---CSLFRGLQK---EEVVLLTHGDSVDKVADGFKVVARSGNIVA 179
Query: 181 EMFTIGDHILGIQGHPE 197
+ + G Q HPE
Sbjct: 180 GIANESKKLYGAQFHPE 196
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 13/148 (8%)
Query: 55 DFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGG 114
DFN G ++SG P + + + F+ + + VLGIC+G Q + LGG
Sbjct: 51 DFNP----HGIILSGGP-ETVTLSHTLRAPAFIFE----IGCPVLGICYGMQTMAYQLGG 101
Query: 115 KVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGS--LSIMECHRDEVWKVPIGAEVI 172
KV + + G ++R++N +ED G L + H D V ++P G E
Sbjct: 102 KVNRTAKA-EFGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSELPPGFEAT 160
Query: 173 GFSDKTGV-EMFTIGDHILGIQGHPEYT 199
+D + + M G+Q HPE T
Sbjct: 161 ACTDNSPLAAMADFKRRFFGLQFHPEVT 188
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 14/137 (10%)
Query: 62 YDGFVISGSPYDAYGNDN-WILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAY 120
+ +ISG P Y D W F + K VLGIC+G Q++ + GG V K
Sbjct: 68 FRAIIISGGPNSVYAEDAPWFDPAIFTIG------KPVLGICYGMQMMNKVFGGTVHKKS 121
Query: 121 TGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVPIGAEVIGFSDKTGV 180
D G+ + + N CS L + ++ H D V KV G +V+ S
Sbjct: 122 VRED-GVFNISVDNT---CSLFRGLQK---EEVVLLTHGDSVDKVADGFKVVARSGNIVA 174
Query: 181 EMFTIGDHILGIQGHPE 197
+ + G Q HPE
Sbjct: 175 GIANESKKLYGAQFHPE 191
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 23/178 (12%)
Query: 25 YGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDL-HKYDGFVISGSPYDAYGNDNWILK 83
+G + +A E + L ++ GD P L H+ ++SG P + D
Sbjct: 7 FGSQYTRLIARRLRELRAFSL--ILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPD 64
Query: 84 LCFMLQTLDAMQKKVLGICFGHQVLCRALGGKV---GKAYTGWDIGLRRVRIVNDLAPCS 140
L +LGIC+G Q+L + LGG+V G+A G + + P
Sbjct: 65 PRLFSSGL-----PLLGICYGXQLLAQELGGRVERAGRAEYG------KALLTRHEGPL- 112
Query: 141 FLEDLGEIPGSLSIMECHRDEVWKVPIGAEVIGFSDKTGVEMFTIGD-HILGIQGHPE 197
+ G + + H+D V P G V+ +++ V D G+Q HPE
Sbjct: 113 ----FRGLEGEVQVWXSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPE 166
>pdb|1O1Y|A Chain A, Crystal Structure Of A Glutamine Amidotransferase (tm1158)
From Thermotoga Maritima At 1.70 A Resolution
Length = 239
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 15/192 (7%)
Query: 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKK---VLGICFGHQVLCRALGGK 115
L +Y V+ G AY + + L + Q ++ + KK LGI G Q L + LG
Sbjct: 55 LEEYSLVVLLGGYXGAYEEEKYPF-LKYEFQLIEEILKKEIPFLGIXLGSQXLAKVLGAS 113
Query: 116 VGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVPIGAEVIGFS 175
V + G +IG V V+D F E P L + + H D + +P A + S
Sbjct: 114 VYRGKNGEEIGWYFVEKVSD---NKFFR---EFPDRLRVFQWHGD-TFDLPRRATRVFTS 166
Query: 176 DKTGVEMFTIGDHILGIQGHPEYTKDILYNLIDRLLNNNSIEREFAENAKFGLEIAEPDR 235
+K + F G + G+Q H E I+ + +E++ + + LE AE +
Sbjct: 167 EKYENQGFVYGKAV-GLQFHIEVGARTXKRWIE--AYKDELEKKKI-DPRLLLETAEREE 222
Query: 236 KCWEKICRNFLK 247
K + + R+ L+
Sbjct: 223 KVLKGLLRSLLE 234
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 23/178 (12%)
Query: 25 YGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDL-HKYDGFVISGSPYDAYGNDNWILK 83
+G + +A E + L ++ GD P L H+ ++SG P + D
Sbjct: 7 FGSQYTRLIARRLRELRAFSL--ILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPD 64
Query: 84 LCFMLQTLDAMQKKVLGICFGHQVLCRALGGKV---GKAYTGWDIGLRRVRIVNDLAPCS 140
L +LGIC+G Q+L + LGG+V G+A G + + P
Sbjct: 65 PRLFSSGL-----PLLGICYGMQLLAQELGGRVERAGRAEYG------KALLTRHEGPL- 112
Query: 141 FLEDLGEIPGSLSIMECHRDEVWKVPIGAEVIGFSDKTGVEMFTIGD-HILGIQGHPE 197
+ G + + H+D V P G V+ +++ V D G+Q HPE
Sbjct: 113 ----FRGLEGEVQVWMSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPE 166
>pdb|3M3P|A Chain A, Crystal Structure Of Glutamine Amido Transferase From
Methylobacillus Flagellatus
Length = 250
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 14/157 (8%)
Query: 46 FRVVEGDFPDF--NDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICF 103
F+V+ D D ++ G G P A + W L +++ A + V+G C
Sbjct: 31 FQVLRXDRSDPLPAEIRDCSGLAXXGGPXSANDDLPWXPTLLALIRDAVAQRVPVIGHCL 90
Query: 104 GHQVLCRALGGKV---GKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRD 160
G Q+L +A GG+V A GW VR P + LE LG L + E H
Sbjct: 91 GGQLLAKAXGGEVTDSPHAEIGW------VRAWPQHVPQA-LEWLGTW-DELELFEWHY- 141
Query: 161 EVWKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPE 197
+ + +P GA I S+ + + + D +G Q H E
Sbjct: 142 QTFSIPPGAVHILRSEHCANQAYVLDDLHIGFQCHIE 178
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 95 QKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSI 154
+ +LG+C GHQ + A G K+ +A + + + +VN+ +P S + + +
Sbjct: 77 RTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNN-SPLSLYYGIAKEFKATRY 135
Query: 155 MECHRDEVWKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTKD-----ILYNLIDR 209
DEV + P+ + I D + + I G+Q HPE ILYN ++R
Sbjct: 136 HSLVVDEVHR-PLIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLNR 194
Query: 210 L 210
+
Sbjct: 195 V 195
>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
pdb|3UOW|B Chain B, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
Length = 556
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 27/160 (16%)
Query: 64 GFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTG- 122
G ++SG PY + LK L+ + + GIC+G Q + + G+V K+ T
Sbjct: 53 GVILSGGPYSVTEAGSPHLKKEVFEYFLEK-KIPIFGICYGMQEIAVQMNGEVKKSKTSE 111
Query: 123 ---WDIGLRRVRIVNDLAPCSFLEDLG---EIPGSLSIME--C----------------H 158
D+ + R +N++ C D ++ + +M C H
Sbjct: 112 YGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWMNH 171
Query: 159 RDEVWKVPIGAEVIGFSDKTGV-EMFTIGDHILGIQGHPE 197
DEV K+P ++ S+ + ++ +I G+Q HPE
Sbjct: 172 NDEVTKIPENFYLVSSSENCLICSIYNKEYNIYGVQYHPE 211
>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|D Chain D, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|F Chain F, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|H Chain H, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 382
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 63 DGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTG 122
DG +S P D +D I + L+T V GIC GHQ+L A G K K G
Sbjct: 234 DGIFLSNGPGDPAPDDYAITAIQKFLET----DIPVFGICLGHQLLALASGAKTVKMKFG 289
Query: 123 WDIGLRRVRIV 133
G V+ V
Sbjct: 290 HHGGNHPVKDV 300
>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|D Chain D, Anthranilate Synthase From S. Marcescens
pdb|1I7S|B Chain B, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|D Chain D, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 193
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 87 MLQTLDAMQKKVLGICFGHQVLCRALGGKVGKA 119
+LQ L Q ++GIC GHQ + A GG+VG+A
Sbjct: 70 LLQRLRG-QLPIIGICLGHQAIVEAYGGQVGQA 101
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 382
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 63 DGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTG 122
DG +S P D D I + L+T V GIC GHQ+L A G K K G
Sbjct: 234 DGIFLSNGPGDPAPCDYAITAIQKFLET----DIPVFGICLGHQLLALASGAKTVKMKFG 289
Query: 123 WDIGLRRVRIV 133
G V+ V
Sbjct: 290 HHGGNHPVKDV 300
>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 382
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 63 DGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTG 122
DG +S P D D I + L+T V GIC GHQ+L A G K K G
Sbjct: 234 DGIFLSNGPGDPAPCDYAITAIQKFLET----DIPVFGICLGHQLLALASGAKTVKMKFG 289
Query: 123 WDIGLRRVRIV 133
G V+ V
Sbjct: 290 HHGGNHPVKDV 300
>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 192
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 97 KVLGICFGHQVLCRALGGKVGKA 119
++GIC GHQ + A GG VG+A
Sbjct: 78 PIIGICLGHQAIVEAYGGYVGQA 100
>pdb|3R74|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
pdb|3R74|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
Length = 645
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 55 DFNDLHKYDGFVISGSPYDAY-GNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALG 113
D DL +YD V+ P D D I +L L+ L K + +C HQ+L LG
Sbjct: 480 DAVDLARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILG 539
>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|B Chain B, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|D Chain D, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|F Chain F, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|H Chain H, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
Length = 382
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 63 DGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTG 122
DG +S P D D I + L+T V GI GHQ+L A G K K G
Sbjct: 234 DGIFLSNGPGDPAPCDYAITAIQKFLET----DIPVFGISLGHQLLALASGAKTVKMKFG 289
Query: 123 WDIGLRRVRIV 133
G V+ V
Sbjct: 290 HHGGNHPVKDV 300
>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|B Chain B, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|D Chain D, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|F Chain F, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|H Chain H, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
Length = 382
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 63 DGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTG 122
DG +S P D D I + L+T V GI GHQ+L A G K K G
Sbjct: 234 DGIFLSNGPGDPAPCDYAITAIQKFLET----DIPVFGIXLGHQLLALASGAKTVKMKFG 289
Query: 123 WDIGLRRVRIV 133
G V+ V
Sbjct: 290 HHGGNHPVKDV 300
>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|D Chain D, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|F Chain F, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|H Chain H, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 379
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 63 DGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTG 122
DG +S P D D I + L+T V GI GHQ+L A G K K G
Sbjct: 233 DGIFLSNGPGDPAPCDYAITAIQKFLET----DIPVFGIXLGHQLLALASGAKTVKMKFG 288
Query: 123 WDIGLRRVRIV 133
G V+ V
Sbjct: 289 HHGGNHPVKDV 299
>pdb|2YY8|A Chain A, Crystal Structure Of Archaeal Trna-Methylase For Position
56 (Atrm56) From Pyrococcus Horikoshii, Complexed With
S- Adenosyl-L-Methionine
pdb|2YY8|B Chain B, Crystal Structure Of Archaeal Trna-Methylase For Position
56 (Atrm56) From Pyrococcus Horikoshii, Complexed With
S- Adenosyl-L-Methionine
Length = 201
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 171 VIGFSDKTGVEMFTIGDHILGIQGHPEYTKDILYNLIDRLLNNNSIEREF 220
+I ++K E++ + D+ + I P L L+DRLL +++EF
Sbjct: 106 IIVGAEKVPREVYELADYNVAIGNQPHSEVAALAVLLDRLLEGKGLKKEF 155
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a
Length = 358
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 177 KTGVEMFTIGDHILGIQGHPEYTKDILYNLIDRLLNNNSIEREF 220
K+GV + + + G H E T +L +L +++ N +E+ F
Sbjct: 86 KSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSF 129
>pdb|2ZAE|A Chain A, Crystal Structure Of Protein Ph1601p In Complex With
Protein Ph1771p Of Archaeal Ribonuclease P From
Pyrococcus Horikoshii Ot3
pdb|2ZAE|C Chain C, Crystal Structure Of Protein Ph1601p In Complex With
Protein Ph1771p Of Archaeal Ribonuclease P From
Pyrococcus Horikoshii Ot3
Length = 127
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 111 ALGGKVGKAYTGWD--IGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVPIG 168
A G+V + W IGLR VRIV P + I + +++ D +WKVP
Sbjct: 33 AHRGRVTRRNIIWHELIGLR-VRIVGSTHPAFVGIEGYVIDETRNMLVIAGDRIWKVPKD 91
Query: 169 AEVIGFSDKTGVEMFTIGDHILG 191
+ F G ++ G+ ++G
Sbjct: 92 VSIFEFEADDGTKIKIPGERLVG 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.144 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,441,238
Number of Sequences: 62578
Number of extensions: 381148
Number of successful extensions: 699
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 27
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)