Query 025645
Match_columns 250
No_of_seqs 221 out of 1481
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3179 Predicted glutamine sy 100.0 4.1E-52 8.9E-57 323.7 19.7 243 4-249 2-245 (245)
2 PRK05665 amidotransferase; Pro 100.0 1.6E-47 3.4E-52 318.5 29.3 232 6-248 2-235 (240)
3 PRK09065 glutamine amidotransf 100.0 7.9E-46 1.7E-50 308.7 23.6 231 7-248 2-234 (237)
4 PRK07567 glutamine amidotransf 100.0 6.5E-41 1.4E-45 279.7 24.5 227 8-248 3-240 (242)
5 PRK06490 glutamine amidotransf 100.0 3.1E-41 6.6E-46 281.0 22.1 223 5-248 6-229 (239)
6 PRK07053 glutamine amidotransf 100.0 2.3E-39 5E-44 268.9 26.3 223 7-248 3-231 (234)
7 PRK08250 glutamine amidotransf 100.0 1.7E-39 3.7E-44 270.1 22.2 225 7-248 1-231 (235)
8 COG0518 GuaA GMP synthase - Gl 100.0 6.6E-38 1.4E-42 252.6 18.5 186 7-209 2-188 (198)
9 cd01741 GATase1_1 Subgroup of 100.0 2.3E-37 5E-42 249.9 19.9 183 8-206 1-187 (188)
10 PRK06895 putative anthranilate 100.0 4.6E-35 1E-39 236.7 20.8 178 7-208 2-187 (190)
11 PRK07649 para-aminobenzoate/an 100.0 1.3E-35 2.8E-40 240.2 17.1 174 25-211 8-189 (195)
12 PRK08007 para-aminobenzoate sy 100.0 1.3E-35 2.8E-40 239.1 15.9 171 25-208 8-186 (187)
13 COG0512 PabA Anthranilate/para 100.0 5E-35 1.1E-39 229.4 16.7 172 25-209 10-190 (191)
14 TIGR00566 trpG_papA glutamine 100.0 1.6E-34 3.4E-39 233.0 17.5 171 25-208 8-187 (188)
15 cd01742 GATase1_GMP_Synthase T 100.0 2.6E-34 5.6E-39 230.8 18.2 165 27-206 9-180 (181)
16 TIGR00888 guaA_Nterm GMP synth 100.0 3.9E-34 8.6E-39 231.0 19.2 167 27-209 9-183 (188)
17 PRK07765 para-aminobenzoate sy 100.0 4.2E-34 9.1E-39 234.6 19.3 183 7-210 1-192 (214)
18 cd01743 GATase1_Anthranilate_S 100.0 2.8E-34 6.1E-39 231.1 17.3 171 24-207 6-184 (184)
19 PRK05670 anthranilate synthase 100.0 4.9E-34 1.1E-38 230.6 16.5 171 26-209 9-187 (189)
20 CHL00101 trpG anthranilate syn 100.0 4E-34 8.6E-39 231.1 15.3 171 26-209 9-188 (190)
21 PRK00758 GMP synthase subunit 100.0 2.6E-33 5.7E-38 225.5 18.5 165 27-210 10-181 (184)
22 PRK06774 para-aminobenzoate sy 100.0 1.8E-33 3.9E-38 227.7 16.9 171 25-208 8-190 (191)
23 PLN02347 GMP synthetase 100.0 6.4E-33 1.4E-37 253.4 21.9 200 8-230 12-224 (536)
24 PRK08857 para-aminobenzoate sy 100.0 3.4E-33 7.4E-38 226.3 17.0 171 25-209 8-192 (193)
25 PF00117 GATase: Glutamine ami 100.0 3.7E-34 8E-39 231.9 10.7 174 25-208 6-190 (192)
26 PRK05637 anthranilate synthase 100.0 1.6E-32 3.4E-37 224.0 19.5 181 7-210 2-205 (208)
27 PRK00074 guaA GMP synthase; Re 100.0 1.9E-32 4E-37 250.7 20.2 198 7-231 4-212 (511)
28 PLN02335 anthranilate synthase 100.0 5.2E-32 1.1E-36 223.3 19.6 185 6-210 18-213 (222)
29 PRK13527 glutamine amidotransf 100.0 1.7E-31 3.6E-36 217.6 17.9 187 7-210 1-197 (200)
30 PRK13146 hisH imidazole glycer 100.0 1.8E-31 4E-36 218.4 14.2 181 7-209 2-207 (209)
31 PRK13525 glutamine amidotransf 100.0 9.7E-31 2.1E-35 210.9 17.5 173 7-210 2-187 (189)
32 PRK05368 homoserine O-succinyl 100.0 5.5E-30 1.2E-34 217.6 22.3 197 3-211 32-252 (302)
33 TIGR01815 TrpE-clade3 anthrani 100.0 1.5E-30 3.3E-35 244.3 20.7 184 5-211 515-709 (717)
34 PRK13566 anthranilate synthase 100.0 1.6E-30 3.4E-35 244.6 20.7 182 5-210 525-718 (720)
35 COG0118 HisH Glutamine amidotr 100.0 8.8E-31 1.9E-35 206.5 14.2 179 7-210 2-203 (204)
36 cd01747 GATase1_Glutamyl_Hydro 100.0 2.3E-31 5E-36 225.5 10.9 214 29-246 22-268 (273)
37 PRK09522 bifunctional glutamin 100.0 2.4E-29 5.2E-34 230.2 23.2 214 7-247 2-227 (531)
38 PRK14607 bifunctional glutamin 100.0 7.4E-30 1.6E-34 234.9 19.5 206 25-247 8-222 (534)
39 CHL00188 hisH imidazole glycer 100.0 7.8E-30 1.7E-34 208.3 15.3 179 7-209 2-209 (210)
40 PRK11366 puuD gamma-glutamyl-g 100.0 1.2E-29 2.6E-34 213.3 16.8 177 30-210 29-244 (254)
41 cd01748 GATase1_IGP_Synthase T 100.0 5.1E-30 1.1E-34 208.7 14.1 165 28-206 10-197 (198)
42 PRK13170 hisH imidazole glycer 100.0 1.2E-29 2.7E-34 205.7 16.3 174 7-208 1-195 (196)
43 PRK13141 hisH imidazole glycer 100.0 1.9E-29 4.1E-34 206.3 14.5 176 9-209 2-201 (205)
44 cd01744 GATase1_CPSase Small c 100.0 4.6E-29 9.9E-34 199.7 15.7 149 32-199 12-164 (178)
45 PRK13143 hisH imidazole glycer 100.0 1.6E-28 3.4E-33 200.0 18.0 177 7-209 1-197 (200)
46 PRK13181 hisH imidazole glycer 100.0 7.6E-29 1.7E-33 201.8 13.8 175 9-208 2-198 (199)
47 TIGR01855 IMP_synth_hisH imida 100.0 2.4E-28 5.2E-33 198.3 15.8 163 29-207 11-194 (196)
48 PRK12564 carbamoyl phosphate s 100.0 3.1E-28 6.7E-33 212.7 16.4 173 6-209 177-359 (360)
49 PLN02889 oxo-acid-lyase/anthra 100.0 1E-27 2.3E-32 227.8 20.2 185 7-211 82-336 (918)
50 cd01745 GATase1_2 Subgroup of 100.0 1.6E-28 3.4E-33 198.3 11.6 144 25-200 17-175 (189)
51 cd01749 GATase1_PB Glutamine A 100.0 2.7E-28 5.8E-33 196.0 12.9 148 34-201 15-175 (183)
52 PRK14004 hisH imidazole glycer 100.0 6.5E-28 1.4E-32 197.0 13.2 178 9-209 2-209 (210)
53 TIGR03800 PLP_synth_Pdx2 pyrid 100.0 1.5E-27 3.3E-32 191.3 14.6 170 8-207 1-183 (184)
54 TIGR01368 CPSaseIIsmall carbam 100.0 4.6E-27 9.9E-32 205.1 17.0 170 7-210 174-356 (358)
55 PRK13152 hisH imidazole glycer 99.9 6.2E-27 1.3E-31 190.8 15.2 173 9-208 2-200 (201)
56 PRK12838 carbamoyl phosphate s 99.9 1.6E-26 3.4E-31 201.5 17.7 174 6-211 167-351 (354)
57 cd01746 GATase1_CTP_Synthase T 99.9 1.4E-26 3E-31 192.2 16.1 178 8-199 2-221 (235)
58 TIGR01823 PabB-fungal aminodeo 99.9 3.7E-26 8.1E-31 216.4 21.1 185 4-211 3-205 (742)
59 COG2071 Predicted glutamine am 99.9 2E-26 4.4E-31 186.4 15.1 175 31-210 30-238 (243)
60 PLN02771 carbamoyl-phosphate s 99.9 1.9E-26 4.1E-31 202.7 14.8 160 7-199 241-405 (415)
61 CHL00197 carA carbamoyl-phosph 99.9 7.4E-26 1.6E-30 198.4 15.9 171 6-210 192-374 (382)
62 PF07722 Peptidase_C26: Peptid 99.9 1.2E-26 2.6E-31 190.9 9.1 162 30-197 27-217 (217)
63 PRK06186 hypothetical protein; 99.9 3.5E-25 7.5E-30 181.0 16.8 191 7-210 2-226 (229)
64 COG0505 CarA Carbamoylphosphat 99.9 6E-25 1.3E-29 186.4 15.3 174 6-211 179-363 (368)
65 PLN02617 imidazole glycerol ph 99.9 2.1E-24 4.5E-29 197.3 18.9 181 6-212 6-212 (538)
66 KOG1622 GMP synthase [Nucleoti 99.9 2.5E-24 5.4E-29 186.1 12.8 194 5-224 15-220 (552)
67 PRK13142 hisH imidazole glycer 99.9 1.1E-23 2.4E-28 168.8 15.3 165 9-208 2-186 (192)
68 KOG0026 Anthranilate synthase, 99.9 1E-23 2.3E-28 159.9 13.4 177 24-210 26-214 (223)
69 PRK05380 pyrG CTP synthetase; 99.9 6.3E-23 1.4E-27 184.8 16.8 192 6-210 288-526 (533)
70 TIGR00337 PyrG CTP synthase. C 99.9 5.9E-23 1.3E-27 185.0 14.8 186 6-208 289-524 (525)
71 PLN02327 CTP synthase 99.9 9.7E-22 2.1E-26 177.4 15.6 193 6-210 297-546 (557)
72 TIGR01737 FGAM_synth_I phospho 99.9 5.7E-21 1.2E-25 158.4 17.6 181 7-208 1-225 (227)
73 KOG1224 Para-aminobenzoate (PA 99.9 5.2E-21 1.1E-25 168.5 12.6 180 25-210 23-217 (767)
74 COG0504 PyrG CTP synthase (UTP 99.9 1.7E-20 3.7E-25 164.8 14.9 191 7-210 289-526 (533)
75 PLN02832 glutamine amidotransf 99.8 1.8E-20 3.9E-25 155.4 12.7 182 7-210 2-214 (248)
76 PF04204 HTS: Homoserine O-suc 99.8 8.5E-19 1.9E-23 147.9 17.2 196 3-211 31-251 (298)
77 PRK03619 phosphoribosylformylg 99.8 3E-18 6.6E-23 141.2 18.5 173 7-199 1-199 (219)
78 PRK13526 glutamine amidotransf 99.8 5.6E-19 1.2E-23 139.3 12.5 161 7-201 3-169 (179)
79 KOG0370 Multifunctional pyrimi 99.8 1.2E-18 2.6E-23 161.9 13.7 171 7-211 173-353 (1435)
80 TIGR01001 metA homoserine O-su 99.8 1.8E-17 3.9E-22 138.9 17.0 195 3-211 32-251 (300)
81 cd03131 GATase1_HTS Type 1 glu 99.7 6.2E-17 1.4E-21 127.8 13.3 152 9-173 1-174 (175)
82 KOG1559 Gamma-glutamyl hydrola 99.7 7.4E-19 1.6E-23 141.4 1.7 231 8-245 54-321 (340)
83 PRK01175 phosphoribosylformylg 99.7 6.9E-15 1.5E-19 123.8 20.8 182 4-199 1-228 (261)
84 PF01174 SNO: SNO glutamine am 99.7 6.1E-17 1.3E-21 127.2 7.7 155 33-201 12-174 (188)
85 KOG2387 CTP synthase (UTP-ammo 99.7 2.1E-16 4.5E-21 137.0 10.4 182 6-199 298-530 (585)
86 COG0311 PDX2 Predicted glutami 99.7 2.2E-15 4.8E-20 117.2 15.0 170 7-200 1-178 (194)
87 COG0047 PurL Phosphoribosylfor 99.7 1.6E-14 3.4E-19 116.3 18.8 174 6-198 2-208 (231)
88 KOG0623 Glutamine amidotransfe 99.7 1.2E-15 2.6E-20 128.6 12.0 164 30-209 15-207 (541)
89 cd01740 GATase1_FGAR_AT Type 1 99.6 2.6E-15 5.6E-20 125.4 12.9 163 32-199 15-215 (238)
90 COG1897 MetA Homoserine trans- 99.5 2.9E-13 6.3E-18 110.0 14.5 190 3-204 32-244 (307)
91 PF13507 GATase_5: CobB/CobQ-l 99.4 9.8E-12 2.1E-16 104.5 14.3 177 7-198 2-228 (259)
92 cd03130 GATase1_CobB Type 1 gl 99.4 3.3E-11 7.1E-16 98.0 14.5 159 33-206 17-197 (198)
93 KOG3210 Imidazoleglycerol-phos 99.3 4.5E-12 9.8E-17 96.9 8.5 161 29-199 27-205 (226)
94 PRK06278 cobyrinic acid a,c-di 99.2 2.3E-10 4.9E-15 103.9 15.2 81 7-112 1-82 (476)
95 cd01750 GATase1_CobQ Type 1 gl 99.2 3E-11 6.6E-16 97.9 7.5 75 31-113 14-90 (194)
96 TIGR01857 FGAM-synthase phosph 99.2 2.3E-09 5.1E-14 106.2 18.7 182 5-198 976-1214(1239)
97 PRK13896 cobyrinic acid a,c-di 99.0 1.3E-08 2.9E-13 91.6 15.9 178 7-209 234-432 (433)
98 PRK05297 phosphoribosylformylg 99.0 1.5E-08 3.2E-13 102.0 17.2 179 6-199 1035-1259(1290)
99 PRK01077 cobyrinic acid a,c-di 99.0 3.1E-08 6.8E-13 90.3 17.8 183 7-210 246-448 (451)
100 PLN03206 phosphoribosylformylg 99.0 2.3E-08 4.9E-13 100.0 17.8 181 5-199 1036-1272(1307)
101 TIGR01735 FGAM_synt phosphorib 99.0 3E-08 6.6E-13 99.6 16.9 180 6-199 1055-1280(1310)
102 TIGR00379 cobB cobyrinic acid 98.9 6.6E-08 1.4E-12 88.1 17.4 182 7-210 245-447 (449)
103 PRK00784 cobyric acid synthase 98.9 5.7E-08 1.2E-12 89.4 17.0 88 7-112 252-342 (488)
104 PF07685 GATase_3: CobB/CobQ-l 98.8 7.5E-08 1.6E-12 75.5 11.5 57 57-113 3-60 (158)
105 PRK11780 isoprenoid biosynthes 98.7 1.9E-07 4E-12 76.9 9.9 100 7-112 2-145 (217)
106 TIGR01739 tegu_FGAM_synt herpe 98.7 1.2E-06 2.7E-11 87.9 17.1 126 6-144 929-1086(1202)
107 cd03146 GAT1_Peptidase_E Type 98.6 3.5E-08 7.5E-13 81.1 4.5 96 6-111 31-130 (212)
108 PHA03366 FGAM-synthase; Provis 98.6 1.9E-06 4.2E-11 86.9 16.9 127 6-144 1028-1185(1304)
109 cd01653 GATase1 Type 1 glutami 98.6 3.7E-07 8E-12 65.3 8.7 76 32-108 17-92 (115)
110 TIGR00313 cobQ cobyric acid sy 98.5 3E-07 6.5E-12 84.3 6.8 54 58-112 281-336 (475)
111 cd03169 GATase1_PfpI_1 Type 1 98.4 1.7E-06 3.8E-11 69.1 9.3 49 61-111 76-124 (180)
112 COG3442 Predicted glutamine am 98.4 2.1E-06 4.6E-11 69.0 9.5 171 7-197 4-199 (250)
113 cd03128 GAT_1 Type 1 glutamine 98.4 1.4E-06 3.1E-11 59.4 6.9 76 32-108 17-92 (92)
114 TIGR01382 PfpI intracellular p 98.4 2.2E-06 4.7E-11 67.4 8.4 95 8-111 1-108 (166)
115 cd03134 GATase1_PfpI_like A ty 98.3 4.5E-06 9.7E-11 65.6 9.6 95 8-111 1-110 (165)
116 cd03147 GATase1_Ydr533c_like T 98.3 1.8E-06 3.9E-11 71.8 7.4 52 59-111 92-143 (231)
117 cd03133 GATase1_ES1 Type 1 glu 98.3 5.7E-06 1.2E-10 67.8 9.1 82 32-113 22-143 (213)
118 cd03132 GATase1_catalase Type 98.3 7E-06 1.5E-10 62.9 9.0 97 7-111 2-111 (142)
119 COG1492 CobQ Cobyric acid synt 98.3 3E-06 6.6E-11 76.3 7.7 89 6-112 251-342 (486)
120 PF09825 BPL_N: Biotin-protein 98.2 8.8E-05 1.9E-09 65.4 16.5 68 42-110 30-97 (367)
121 COG0693 ThiJ Putative intracel 98.2 1.1E-05 2.3E-10 64.9 9.1 98 7-112 3-116 (188)
122 PRK04155 chaperone protein Hch 98.2 1.4E-05 3.1E-10 68.4 10.2 52 59-111 145-196 (287)
123 cd03144 GATase1_ScBLP_like Typ 98.2 1.9E-06 4.2E-11 63.3 4.0 48 60-108 43-90 (114)
124 COG1797 CobB Cobyrinic acid a, 98.1 6.2E-05 1.4E-09 66.9 13.1 181 7-209 246-449 (451)
125 PRK05282 (alpha)-aspartyl dipe 98.1 4.2E-06 9.1E-11 69.5 4.4 101 6-113 31-131 (233)
126 PRK11574 oxidative-stress-resi 98.0 5.9E-05 1.3E-09 61.0 10.6 97 6-110 2-114 (196)
127 PRK11249 katE hydroperoxidase 97.9 7.6E-05 1.7E-09 71.2 9.5 100 4-111 595-707 (752)
128 cd03140 GATase1_PfpI_3 Type 1 97.9 8.1E-05 1.8E-09 58.8 8.1 49 60-111 59-107 (170)
129 cd03135 GATase1_DJ-1 Type 1 gl 97.8 0.00012 2.5E-09 57.2 8.2 79 32-111 17-109 (163)
130 PRK09393 ftrA transcriptional 97.8 0.00021 4.6E-09 62.4 10.5 51 58-111 72-122 (322)
131 cd03137 GATase1_AraC_1 AraC tr 97.8 0.00022 4.8E-09 57.1 9.9 52 58-111 61-112 (187)
132 cd03138 GATase1_AraC_2 AraC tr 97.7 0.00027 6E-09 57.0 9.6 54 58-111 66-120 (195)
133 TIGR01383 not_thiJ DJ-1 family 97.7 0.00018 3.9E-09 57.2 8.1 52 59-111 61-112 (179)
134 PF01965 DJ-1_PfpI: DJ-1/PfpI 97.7 1.3E-05 2.8E-10 61.9 1.0 52 59-111 35-87 (147)
135 cd03148 GATase1_EcHsp31_like T 97.6 9.9E-05 2.1E-09 61.4 5.3 51 60-111 95-145 (232)
136 cd03141 GATase1_Hsp31_like Typ 97.5 0.00017 3.7E-09 59.6 5.0 52 59-111 88-139 (221)
137 cd03139 GATase1_PfpI_2 Type 1 97.4 0.00055 1.2E-08 54.5 7.3 51 59-111 60-110 (183)
138 KOG1907 Phosphoribosylformylgl 97.4 0.0054 1.2E-07 58.9 14.3 178 6-198 1058-1284(1320)
139 cd03129 GAT1_Peptidase_E_like 97.4 0.00018 3.9E-09 58.9 4.2 99 6-111 29-130 (210)
140 COG4285 Uncharacterized conser 97.4 0.053 1.1E-06 44.0 17.7 140 60-206 48-214 (253)
141 PF06283 ThuA: Trehalose utili 97.1 0.016 3.6E-07 47.5 13.1 132 29-176 21-161 (217)
142 cd03136 GATase1_AraC_ArgR_like 97.0 0.0018 3.8E-08 51.8 6.0 51 58-111 61-111 (185)
143 KOG2764 Putative transcription 97.0 0.0033 7.2E-08 51.3 7.1 76 33-111 25-116 (247)
144 PF13278 DUF4066: Putative ami 96.8 0.0013 2.7E-08 51.7 3.7 51 59-111 59-109 (166)
145 TIGR02069 cyanophycinase cyano 96.6 0.0032 7E-08 53.0 4.5 98 7-111 29-132 (250)
146 cd03145 GAT1_cyanophycinase Ty 96.1 0.0059 1.3E-07 50.3 3.5 100 6-112 29-134 (217)
147 PRK03372 ppnK inorganic polyph 95.2 0.11 2.5E-06 45.0 8.2 85 7-106 6-107 (306)
148 COG3155 ElbB Uncharacterized p 95.2 0.12 2.7E-06 40.0 7.3 58 59-116 83-149 (217)
149 COG3340 PepE Peptidase E [Amin 94.9 0.022 4.8E-07 46.2 2.8 97 7-107 33-130 (224)
150 COG4977 Transcriptional regula 94.9 0.64 1.4E-05 40.7 11.9 51 59-111 74-124 (328)
151 PF03575 Peptidase_S51: Peptid 94.1 0.0032 6.9E-08 49.0 -3.6 79 29-108 2-82 (154)
152 COG4090 Uncharacterized protei 94.0 0.16 3.5E-06 37.8 5.4 46 55-103 79-124 (154)
153 PRK01911 ppnK inorganic polyph 93.6 0.42 9.1E-06 41.2 8.2 84 7-105 1-98 (292)
154 PRK04539 ppnK inorganic polyph 93.1 0.82 1.8E-05 39.5 9.1 84 7-105 6-102 (296)
155 PRK03378 ppnK inorganic polyph 92.9 0.79 1.7E-05 39.5 8.8 84 7-105 6-97 (292)
156 PRK03708 ppnK inorganic polyph 92.7 0.77 1.7E-05 39.3 8.4 83 7-105 1-90 (277)
157 PRK14076 pnk inorganic polypho 92.3 0.8 1.7E-05 43.3 8.7 88 4-106 288-383 (569)
158 PRK01231 ppnK inorganic polyph 91.6 1 2.2E-05 38.9 7.9 84 8-106 6-97 (295)
159 PLN02929 NADH kinase 91.4 0.58 1.3E-05 40.4 6.1 63 27-104 34-96 (301)
160 PRK02649 ppnK inorganic polyph 90.9 1.5 3.3E-05 38.1 8.2 85 7-106 2-103 (305)
161 PRK11104 hemG protoporphyrinog 90.4 2.2 4.8E-05 33.8 8.3 67 30-104 19-87 (177)
162 PRK02155 ppnK NAD(+)/NADH kina 90.3 1.7 3.7E-05 37.5 8.1 84 7-105 6-97 (291)
163 PRK14077 pnk inorganic polypho 90.2 1.7 3.7E-05 37.4 7.9 83 7-105 11-98 (287)
164 PRK02645 ppnK inorganic polyph 89.9 2.5 5.3E-05 36.7 8.8 86 5-105 2-92 (305)
165 TIGR02667 moaB_proteo molybden 89.9 0.91 2E-05 35.6 5.6 65 5-72 3-74 (163)
166 PRK09271 flavodoxin; Provision 88.9 6.9 0.00015 30.3 9.9 40 30-69 19-59 (160)
167 PRK04885 ppnK inorganic polyph 87.6 1.6 3.6E-05 37.0 6.0 70 7-106 1-72 (265)
168 PRK01185 ppnK inorganic polyph 87.2 3.6 7.7E-05 35.1 7.9 79 7-105 1-83 (271)
169 COG4635 HemG Flavodoxin [Energ 87.2 5.2 0.00011 31.2 7.8 87 7-105 1-89 (175)
170 COG4126 Hydantoin racemase [Am 86.1 14 0.00031 30.3 10.3 45 60-116 68-112 (230)
171 cd05014 SIS_Kpsf KpsF-like pro 85.2 11 0.00024 27.5 9.0 66 32-104 18-83 (128)
172 PRK01215 competence damage-ind 84.9 1.6 3.4E-05 37.1 4.6 69 4-73 1-74 (264)
173 PF09897 DUF2124: Uncharacteri 84.6 0.83 1.8E-05 34.9 2.4 42 58-103 78-119 (147)
174 PLN02935 Bifunctional NADH kin 84.2 7 0.00015 36.3 8.6 87 5-106 193-297 (508)
175 PF03698 UPF0180: Uncharacteri 84.0 1.5 3.2E-05 30.1 3.2 35 32-73 13-47 (80)
176 PLN02727 NAD kinase 83.9 4.8 0.0001 40.0 7.8 86 5-106 677-778 (986)
177 PF09822 ABC_transp_aux: ABC-t 83.8 7.3 0.00016 32.9 8.2 56 30-97 172-227 (271)
178 TIGR00177 molyb_syn molybdenum 83.7 1.1 2.5E-05 34.2 3.0 67 7-73 1-78 (144)
179 cd03142 GATase1_ThuA Type 1 gl 82.9 25 0.00054 28.9 16.0 125 19-154 14-143 (215)
180 PF03358 FMN_red: NADPH-depend 82.8 0.56 1.2E-05 35.8 0.9 91 7-104 1-115 (152)
181 KOG0292 Vesicle coat complex C 82.2 1.5 3.3E-05 42.8 3.7 100 79-197 35-147 (1202)
182 PRK03094 hypothetical protein; 82.0 2.1 4.5E-05 29.3 3.3 35 32-73 13-47 (80)
183 PRK06756 flavodoxin; Provision 81.8 13 0.00028 28.2 8.2 55 7-69 2-57 (148)
184 cd00886 MogA_MoaB MogA_MoaB fa 80.8 2.2 4.7E-05 32.9 3.6 64 8-72 2-72 (152)
185 PRK09417 mogA molybdenum cofac 80.4 6.8 0.00015 31.6 6.4 68 4-72 1-77 (193)
186 PF00885 DMRL_synthase: 6,7-di 80.4 7.6 0.00017 29.8 6.4 94 4-102 1-107 (144)
187 PRK14075 pnk inorganic polypho 80.1 11 0.00023 31.9 7.8 72 7-105 1-72 (256)
188 KOG4180 Predicted kinase [Gene 79.9 4.3 9.4E-05 35.3 5.3 65 23-101 71-135 (395)
189 PRK01372 ddl D-alanine--D-alan 79.2 6 0.00013 33.9 6.2 62 4-68 2-63 (304)
190 cd00885 cinA Competence-damage 79.0 4.3 9.3E-05 32.0 4.8 97 8-112 1-102 (170)
191 COG0771 MurD UDP-N-acetylmuram 78.7 7.3 0.00016 35.7 6.7 56 5-71 6-79 (448)
192 PRK15408 autoinducer 2-binding 78.7 9.4 0.0002 33.5 7.3 88 1-101 18-111 (336)
193 PRK14569 D-alanyl-alanine synt 77.7 11 0.00025 32.3 7.5 42 5-48 2-43 (296)
194 cd00758 MoCF_BD MoCF_BD: molyb 77.6 3 6.4E-05 31.3 3.4 64 8-72 1-69 (133)
195 PRK14690 molybdopterin biosynt 77.5 4.4 9.6E-05 36.8 5.0 68 5-72 192-270 (419)
196 PRK03501 ppnK inorganic polyph 76.9 16 0.00035 31.0 7.9 69 8-104 4-74 (264)
197 PRK02231 ppnK inorganic polyph 76.7 7.1 0.00015 33.3 5.7 63 32-104 5-75 (272)
198 cd06310 PBP1_ABC_sugar_binding 75.5 7.6 0.00017 32.2 5.7 81 8-101 1-88 (273)
199 cd06316 PBP1_ABC_sugar_binding 75.4 6.2 0.00013 33.3 5.2 81 8-101 1-87 (294)
200 cd06300 PBP1_ABC_sugar_binding 74.9 7.6 0.00017 32.2 5.5 81 8-101 1-91 (272)
201 cd06320 PBP1_allose_binding Pe 74.8 12 0.00025 31.1 6.6 81 8-101 1-88 (275)
202 PF10087 DUF2325: Uncharacteri 74.6 23 0.00051 24.8 7.2 75 30-111 13-92 (97)
203 PRK06703 flavodoxin; Provision 74.6 21 0.00046 27.1 7.6 36 30-68 20-55 (151)
204 cd06292 PBP1_LacI_like_10 Liga 74.5 8.4 0.00018 31.9 5.7 83 9-101 2-89 (273)
205 PF13380 CoA_binding_2: CoA bi 73.9 3.4 7.5E-05 30.3 2.8 56 7-69 1-63 (116)
206 cd06319 PBP1_ABC_sugar_binding 73.8 6.1 0.00013 32.8 4.7 81 8-101 1-86 (277)
207 TIGR01754 flav_RNR ribonucleot 73.6 29 0.00062 26.1 8.0 68 31-102 20-90 (140)
208 cd06305 PBP1_methylthioribose_ 73.1 5 0.00011 33.2 4.0 80 8-101 1-86 (273)
209 cd06318 PBP1_ABC_sugar_binding 73.0 5.9 0.00013 33.0 4.4 78 8-99 1-84 (282)
210 PRK04761 ppnK inorganic polyph 72.4 5.6 0.00012 33.4 4.0 37 59-105 23-59 (246)
211 PRK10680 molybdopterin biosynt 72.2 4.7 0.0001 36.6 3.8 68 5-72 176-254 (411)
212 PRK10653 D-ribose transporter 71.8 9.9 0.00021 32.2 5.6 85 4-101 24-113 (295)
213 PF13407 Peripla_BP_4: Peripla 71.7 15 0.00031 30.2 6.5 82 9-104 1-89 (257)
214 PRK03767 NAD(P)H:quinone oxido 71.3 28 0.00061 27.9 7.8 57 7-69 2-77 (200)
215 TIGR00200 cinA_nterm competenc 71.1 5.2 0.00011 36.3 3.8 66 7-73 1-71 (413)
216 COG0303 MoeA Molybdopterin bio 70.6 3.2 6.9E-05 37.5 2.3 68 5-72 175-253 (404)
217 COG0061 nadF NAD kinase [Coenz 70.6 27 0.00059 29.9 7.9 36 60-105 54-89 (281)
218 PF00532 Peripla_BP_1: Peripla 69.3 9.9 0.00021 32.3 5.0 58 7-70 2-65 (279)
219 PF09075 STb_secrete: Heat-sta 69.2 0.88 1.9E-05 26.3 -1.0 17 97-113 31-47 (48)
220 cd03522 MoeA_like MoeA_like. T 68.8 7.3 0.00016 34.0 4.1 67 5-72 158-230 (312)
221 COG4242 CphB Cyanophycinase an 68.8 12 0.00027 31.4 5.1 52 59-110 104-155 (293)
222 cd01575 PBP1_GntR Ligand-bindi 68.8 17 0.00037 29.8 6.3 78 9-101 2-84 (268)
223 cd06281 PBP1_LacI_like_5 Ligan 68.7 12 0.00025 31.0 5.3 79 9-101 2-85 (269)
224 cd01538 PBP1_ABC_xylose_bindin 68.7 11 0.00023 31.9 5.1 81 8-101 1-86 (288)
225 cd06301 PBP1_rhizopine_binding 68.6 8 0.00017 32.0 4.3 80 8-101 1-87 (272)
226 COG0521 MoaB Molybdopterin bio 68.0 15 0.00033 28.9 5.3 66 6-73 7-79 (169)
227 PRK13302 putative L-aspartate 68.0 58 0.0013 27.6 9.4 83 1-104 1-100 (271)
228 PRK00549 competence damage-ind 67.8 8 0.00017 35.1 4.3 67 7-74 1-72 (414)
229 cd06309 PBP1_YtfQ_like Peripla 67.8 9.4 0.0002 31.7 4.5 80 9-101 2-86 (273)
230 PRK03670 competence damage-ind 67.4 7 0.00015 33.0 3.6 70 7-77 1-76 (252)
231 cd06274 PBP1_FruR Ligand bindi 66.5 9.6 0.00021 31.4 4.3 78 9-101 2-84 (264)
232 PRK14571 D-alanyl-alanine synt 66.0 19 0.00042 30.8 6.2 60 7-68 1-60 (299)
233 smart00852 MoCF_biosynth Proba 66.0 5 0.00011 30.0 2.3 46 27-72 18-68 (135)
234 PRK03673 hypothetical protein; 66.0 7.3 0.00016 35.1 3.6 70 7-77 2-76 (396)
235 cd01545 PBP1_SalR Ligand-bindi 65.9 19 0.00041 29.6 6.0 79 9-101 2-86 (270)
236 PRK00561 ppnK inorganic polyph 65.7 7.7 0.00017 32.9 3.5 37 60-106 32-68 (259)
237 KOG1467 Translation initiation 65.6 16 0.00034 33.7 5.5 87 6-105 385-471 (556)
238 PRK10355 xylF D-xylose transpo 65.2 10 0.00022 33.0 4.4 83 6-101 25-112 (330)
239 cd06282 PBP1_GntR_like_2 Ligan 65.0 15 0.00033 30.0 5.3 80 9-102 2-86 (266)
240 cd06308 PBP1_sensor_kinase_lik 64.7 12 0.00027 30.9 4.7 82 8-102 1-88 (270)
241 cd06302 PBP1_LsrB_Quorum_Sensi 64.7 15 0.00032 31.3 5.2 80 8-100 1-86 (298)
242 cd01822 Lysophospholipase_L1_l 64.6 44 0.00095 25.5 7.5 77 26-102 20-108 (177)
243 cd01541 PBP1_AraR Ligand-bindi 64.5 14 0.0003 30.6 4.9 82 9-101 2-89 (273)
244 PRK10569 NAD(P)H-dependent FMN 64.3 37 0.00081 27.2 7.1 40 7-49 1-40 (191)
245 cd06299 PBP1_LacI_like_13 Liga 63.1 14 0.00029 30.4 4.6 78 9-101 2-84 (265)
246 cd03143 A4_beta-galactosidase_ 63.0 39 0.00085 25.6 6.9 51 30-94 29-79 (154)
247 cd00887 MoeA MoeA family. Memb 62.2 5.9 0.00013 35.7 2.3 68 5-72 167-245 (394)
248 TIGR02990 ectoine_eutA ectoine 61.0 57 0.0012 27.2 7.9 77 6-101 120-212 (239)
249 cd06315 PBP1_ABC_sugar_binding 60.6 12 0.00027 31.3 3.9 83 7-102 1-88 (280)
250 cd01544 PBP1_GalR Ligand-bindi 60.6 25 0.00053 29.2 5.8 55 8-69 1-60 (270)
251 PRK05569 flavodoxin; Provision 60.4 67 0.0015 23.8 8.4 36 31-69 21-56 (141)
252 cd01542 PBP1_TreR_like Ligand- 60.3 15 0.00033 30.0 4.4 56 9-70 2-64 (259)
253 cd01536 PBP1_ABC_sugar_binding 60.1 14 0.0003 30.2 4.1 59 8-70 1-64 (267)
254 cd01425 RPS2 Ribosomal protein 60.0 34 0.00073 27.5 6.2 32 60-102 126-157 (193)
255 TIGR02336 1,3-beta-galactosyl- 59.9 47 0.001 32.0 7.8 93 8-104 440-545 (719)
256 cd06298 PBP1_CcpA_like Ligand- 59.8 19 0.0004 29.6 4.9 58 9-70 2-64 (268)
257 cd06322 PBP1_ABC_sugar_binding 59.7 17 0.00037 29.9 4.6 80 9-101 2-86 (267)
258 cd06273 PBP1_GntR_like_1 This 59.7 15 0.00032 30.3 4.2 78 9-101 2-84 (268)
259 cd01836 FeeA_FeeB_like SGNH_hy 59.7 73 0.0016 24.8 8.1 97 6-102 2-113 (191)
260 TIGR01755 flav_wrbA NAD(P)H:qu 59.7 66 0.0014 25.8 7.9 58 8-70 2-77 (197)
261 cd06312 PBP1_ABC_sugar_binding 59.2 20 0.00044 29.7 5.0 82 8-102 1-89 (271)
262 cd01451 vWA_Magnesium_chelatas 58.8 57 0.0012 25.4 7.3 57 63-120 101-165 (178)
263 PRK07308 flavodoxin; Validated 58.5 55 0.0012 24.6 6.9 38 30-71 20-57 (146)
264 cd06295 PBP1_CelR Ligand bindi 58.4 14 0.00031 30.6 3.9 80 7-101 4-93 (275)
265 cd01539 PBP1_GGBP Periplasmic 57.9 15 0.00033 31.2 4.1 81 8-101 1-88 (303)
266 PRK06455 riboflavin synthase; 57.7 88 0.0019 24.3 8.1 87 7-101 2-97 (155)
267 cd01540 PBP1_arabinose_binding 57.4 14 0.0003 30.9 3.7 81 8-102 1-86 (289)
268 cd01574 PBP1_LacI Ligand-bindi 57.3 26 0.00057 28.7 5.4 58 9-70 2-65 (264)
269 cd06321 PBP1_ABC_sugar_binding 56.8 29 0.00064 28.6 5.6 81 8-101 1-88 (271)
270 PF08532 Glyco_hydro_42M: Beta 56.8 38 0.00083 27.3 6.1 54 32-99 35-88 (207)
271 cd06267 PBP1_LacI_sugar_bindin 56.6 28 0.00061 28.1 5.4 79 8-101 1-84 (264)
272 PRK11303 DNA-binding transcrip 56.2 32 0.00068 29.4 5.9 60 6-70 61-126 (328)
273 cd01537 PBP1_Repressors_Sugar_ 56.2 26 0.00055 28.3 5.1 80 8-101 1-85 (264)
274 COG1058 CinA Predicted nucleot 56.1 9.4 0.0002 32.2 2.4 49 29-77 23-76 (255)
275 cd06317 PBP1_ABC_sugar_binding 55.2 28 0.0006 28.7 5.2 79 9-101 2-87 (275)
276 TIGR00853 pts-lac PTS system, 54.8 72 0.0016 22.4 7.9 78 6-101 3-81 (95)
277 cd06296 PBP1_CatR_like Ligand- 54.6 28 0.0006 28.6 5.1 78 9-101 2-84 (270)
278 cd06306 PBP1_TorT-like TorT-li 54.2 39 0.00084 28.0 5.9 80 8-101 1-87 (268)
279 TIGR02634 xylF D-xylose ABC tr 54.0 28 0.0006 29.7 5.1 80 9-101 1-85 (302)
280 COG1184 GCD2 Translation initi 53.9 39 0.00084 29.3 5.8 86 6-104 143-230 (301)
281 PRK14497 putative molybdopteri 53.9 13 0.00029 35.0 3.2 67 6-72 179-256 (546)
282 PRK00421 murC UDP-N-acetylmura 53.6 88 0.0019 28.6 8.6 60 2-71 3-76 (461)
283 PLN02493 probable peroxisomal 53.3 51 0.0011 29.5 6.6 60 60-119 244-307 (367)
284 cd06297 PBP1_LacI_like_12 Liga 52.8 29 0.00062 28.8 4.9 58 9-70 2-64 (269)
285 PRK01966 ddl D-alanyl-alanine 52.7 1.1E+02 0.0025 26.6 8.8 45 4-50 1-45 (333)
286 PRK14491 putative bifunctional 52.4 13 0.00027 35.6 2.9 68 5-72 366-444 (597)
287 TIGR01753 flav_short flavodoxi 51.5 62 0.0013 23.8 6.1 38 30-70 17-54 (140)
288 cd06283 PBP1_RegR_EndR_KdgR_li 51.3 19 0.00042 29.4 3.6 77 9-101 2-84 (267)
289 cd06289 PBP1_MalI_like Ligand- 51.0 37 0.0008 27.7 5.3 77 9-101 2-85 (268)
290 KOG2707 Predicted metalloprote 50.9 37 0.00079 30.1 5.1 121 60-211 102-224 (405)
291 PRK01368 murD UDP-N-acetylmura 50.7 83 0.0018 28.9 7.9 59 1-71 1-73 (454)
292 cd06270 PBP1_GalS_like Ligand 50.6 30 0.00066 28.4 4.7 77 9-101 2-84 (268)
293 PRK00170 azoreductase; Reviewe 50.6 45 0.00098 26.5 5.5 45 7-54 2-49 (201)
294 cd06324 PBP1_ABC_sugar_binding 50.3 32 0.0007 29.2 4.9 79 9-101 2-88 (305)
295 TIGR03521 GldG gliding-associa 50.2 1.4E+02 0.003 28.3 9.4 82 5-99 182-266 (552)
296 cd06277 PBP1_LacI_like_1 Ligan 50.2 32 0.0007 28.3 4.8 77 9-101 2-86 (268)
297 PTZ00254 40S ribosomal protein 50.0 85 0.0019 26.4 7.1 33 59-102 116-148 (249)
298 TIGR01481 ccpA catabolite cont 50.0 26 0.00057 30.0 4.4 61 6-70 59-124 (329)
299 PRK09701 D-allose transporter 50.0 78 0.0017 27.0 7.3 83 6-101 24-113 (311)
300 cd06307 PBP1_uncharacterized_s 49.4 76 0.0017 26.1 7.0 82 8-102 1-90 (275)
301 cd06278 PBP1_LacI_like_2 Ligan 49.2 48 0.001 27.0 5.7 77 9-101 2-83 (266)
302 PRK12419 riboflavin synthase s 49.0 62 0.0014 25.2 5.7 93 5-101 9-113 (158)
303 PRK10703 DNA-binding transcrip 48.7 43 0.00093 28.8 5.5 61 6-70 59-124 (341)
304 PRK04690 murD UDP-N-acetylmura 48.4 88 0.0019 28.8 7.7 32 5-47 7-38 (468)
305 cd06284 PBP1_LacI_like_6 Ligan 48.3 25 0.00055 28.7 3.9 58 9-70 2-64 (267)
306 PF02601 Exonuc_VII_L: Exonucl 48.3 39 0.00085 29.3 5.1 43 61-106 75-117 (319)
307 PRK14987 gluconate operon tran 47.8 35 0.00077 29.3 4.8 81 6-101 63-148 (331)
308 PRK10342 glycerate kinase I; P 47.4 25 0.00053 31.6 3.7 45 57-104 280-325 (381)
309 PRK10014 DNA-binding transcrip 47.4 52 0.0011 28.3 5.9 61 6-70 64-129 (342)
310 PLN02979 glycolate oxidase 47.4 71 0.0015 28.5 6.5 60 60-119 243-306 (366)
311 PRK14498 putative molybdopteri 47.3 16 0.00035 35.1 2.8 67 6-72 186-263 (633)
312 COG2185 Sbm Methylmalonyl-CoA 47.2 57 0.0012 25.0 5.1 59 5-69 11-71 (143)
313 cd06271 PBP1_AglR_RafR_like Li 47.1 29 0.00063 28.3 4.1 41 30-70 23-68 (268)
314 PRK06975 bifunctional uroporph 46.8 74 0.0016 30.9 7.1 79 30-116 16-102 (656)
315 PF07505 Gp37_Gp68: Phage prot 46.7 1.4E+02 0.003 25.4 7.9 68 34-104 158-230 (261)
316 PLN02699 Bifunctional molybdop 46.6 19 0.00041 34.9 3.1 67 6-72 181-260 (659)
317 cd06272 PBP1_hexuronate_repres 46.4 34 0.00075 28.0 4.4 58 9-70 2-60 (261)
318 cd06279 PBP1_LacI_like_3 Ligan 46.4 45 0.00098 27.8 5.2 78 9-101 2-85 (283)
319 PF09198 T4-Gluco-transf: Bact 46.4 13 0.00028 20.8 1.1 37 7-43 1-37 (38)
320 COG2984 ABC-type uncharacteriz 46.0 1E+02 0.0022 27.0 7.1 84 6-101 159-245 (322)
321 TIGR02417 fruct_sucro_rep D-fr 45.5 61 0.0013 27.7 6.0 61 6-70 60-125 (327)
322 cd06291 PBP1_Qymf_like Ligand 45.5 51 0.0011 27.0 5.3 58 9-70 2-64 (265)
323 cd01821 Rhamnogalacturan_acety 44.9 1.3E+02 0.0027 23.7 7.3 35 61-95 65-107 (198)
324 PF09508 Lact_bio_phlase: Lact 44.8 44 0.00096 32.1 5.0 188 5-206 434-649 (716)
325 cd06323 PBP1_ribose_binding Pe 44.8 34 0.00073 28.0 4.1 78 9-101 2-86 (268)
326 TIGR03436 acidobact_VWFA VWFA- 44.7 62 0.0013 27.6 5.8 50 64-118 168-237 (296)
327 cd06293 PBP1_LacI_like_11 Liga 44.7 47 0.001 27.3 5.0 58 9-70 2-64 (269)
328 COG1031 Uncharacterized Fe-S o 44.7 47 0.001 30.6 5.0 92 7-100 1-103 (560)
329 PRK00061 ribH 6,7-dimethyl-8-r 44.4 62 0.0014 25.1 5.1 89 5-98 11-111 (154)
330 TIGR00393 kpsF KpsF/GutQ famil 43.7 1.7E+02 0.0037 24.3 8.3 66 32-104 18-83 (268)
331 PF01513 NAD_kinase: ATP-NAD k 43.4 23 0.0005 30.3 2.9 38 59-106 74-111 (285)
332 cd01543 PBP1_XylR Ligand-bindi 43.2 63 0.0014 26.5 5.5 57 8-69 1-58 (265)
333 KOG1273 WD40 repeat protein [G 43.0 22 0.00048 31.0 2.6 33 166-198 75-118 (405)
334 PLN02404 6,7-dimethyl-8-ribity 42.8 91 0.002 23.8 5.7 103 5-111 6-123 (141)
335 cd06285 PBP1_LacI_like_7 Ligan 42.8 62 0.0013 26.5 5.4 75 9-99 2-82 (265)
336 KOG3923 D-aspartate oxidase [A 42.4 1.5E+02 0.0033 25.9 7.5 44 60-103 50-96 (342)
337 TIGR02144 LysX_arch Lysine bio 42.3 1.1E+02 0.0023 25.6 6.9 40 30-69 13-55 (280)
338 TIGR01012 Sa_S2_E_A ribosomal 42.1 39 0.00085 27.3 3.8 33 59-102 106-138 (196)
339 cd05710 SIS_1 A subgroup of th 42.0 1.3E+02 0.0029 21.7 7.4 22 82-103 61-82 (120)
340 PF04230 PS_pyruv_trans: Polys 41.8 1.1E+02 0.0024 24.7 6.8 43 62-105 64-109 (286)
341 PRK11914 diacylglycerol kinase 41.8 74 0.0016 27.3 5.9 66 4-73 6-76 (306)
342 PRK05928 hemD uroporphyrinogen 41.7 1.7E+02 0.0037 23.6 7.9 80 30-117 14-103 (249)
343 COG2979 Uncharacterized protei 41.6 64 0.0014 26.3 4.9 48 188-235 94-146 (225)
344 PRK14568 vanB D-alanine--D-lac 41.1 2.5E+02 0.0053 24.6 9.3 44 5-50 2-45 (343)
345 COG0054 RibH Riboflavin syntha 41.0 1.6E+02 0.0034 22.9 6.7 90 5-99 11-112 (152)
346 cd05008 SIS_GlmS_GlmD_1 SIS (S 40.9 1.3E+02 0.0029 21.5 8.0 64 32-104 17-82 (126)
347 PRK03604 moaC bifunctional mol 40.7 51 0.0011 28.8 4.6 65 7-72 156-226 (312)
348 cd06303 PBP1_LuxPQ_Quorum_Sens 40.7 1.3E+02 0.0027 25.1 7.0 59 8-70 1-69 (280)
349 PRK04308 murD UDP-N-acetylmura 40.5 1.9E+02 0.0041 26.3 8.6 36 1-48 1-36 (445)
350 cd06355 PBP1_FmdD_like Peripla 40.3 1.2E+02 0.0025 26.4 7.0 85 6-106 133-228 (348)
351 cd01835 SGNH_hydrolase_like_3 40.3 1E+02 0.0023 24.0 6.1 69 6-74 1-82 (193)
352 PRK11543 gutQ D-arabinose 5-ph 40.0 1.8E+02 0.004 24.9 8.1 73 32-111 60-133 (321)
353 PF12724 Flavodoxin_5: Flavodo 39.6 59 0.0013 24.4 4.4 68 29-104 15-84 (143)
354 PRK05568 flavodoxin; Provision 39.3 1.6E+02 0.0034 21.8 9.0 37 31-70 21-57 (142)
355 TIGR00114 lumazine-synth 6,7-d 39.2 85 0.0018 23.8 5.1 87 7-98 1-99 (138)
356 PF10609 ParA: ParA/MinD ATPas 39.2 66 0.0014 22.1 4.0 20 82-101 40-59 (81)
357 COG1609 PurR Transcriptional r 38.9 50 0.0011 28.9 4.4 59 7-69 59-122 (333)
358 COG1983 PspC Putative stress-r 38.9 25 0.00054 23.4 1.8 18 94-114 10-27 (70)
359 cd05013 SIS_RpiR RpiR-like pro 38.4 1.2E+02 0.0027 21.7 6.0 82 7-103 14-95 (139)
360 PRK05839 hypothetical protein; 38.3 2.5E+02 0.0055 24.7 8.9 67 32-99 122-192 (374)
361 COG1587 HemD Uroporphyrinogen- 38.2 2.2E+02 0.0047 23.6 8.0 88 6-115 123-224 (248)
362 PF00365 PFK: Phosphofructokin 38.1 73 0.0016 27.3 5.1 43 64-111 4-46 (282)
363 cd05569 PTS_IIB_fructose PTS_I 37.7 1.4E+02 0.0031 20.8 6.1 59 9-71 2-63 (96)
364 PRK13054 lipid kinase; Reviewe 37.7 96 0.0021 26.6 5.9 42 32-73 23-68 (300)
365 PF00994 MoCF_biosynth: Probab 37.4 11 0.00023 28.6 -0.1 45 29-73 19-68 (144)
366 cd02037 MRP-like MRP (Multiple 37.3 1.9E+02 0.0041 22.1 7.6 95 6-105 28-130 (169)
367 TIGR02955 TMAO_TorT TMAO reduc 36.9 76 0.0017 26.7 5.1 59 8-70 1-66 (295)
368 cd06288 PBP1_sucrose_transcrip 36.8 57 0.0012 26.6 4.3 58 9-70 2-65 (269)
369 CHL00067 rps2 ribosomal protei 36.5 45 0.00098 27.7 3.5 31 61-102 161-191 (230)
370 PRK05752 uroporphyrinogen-III 36.4 37 0.0008 28.3 3.0 79 30-116 16-104 (255)
371 PF04016 DUF364: Domain of unk 36.4 15 0.00032 28.2 0.5 54 5-72 10-73 (147)
372 PRK10423 transcriptional repre 36.1 78 0.0017 26.9 5.1 62 6-71 56-122 (327)
373 TIGR00147 lipid kinase, YegS/R 36.0 1.8E+02 0.0038 24.7 7.3 73 31-113 23-102 (293)
374 cd06280 PBP1_LacI_like_4 Ligan 35.8 73 0.0016 26.0 4.8 58 9-70 2-64 (263)
375 cd04795 SIS SIS domain. SIS (S 35.8 1.2E+02 0.0025 20.0 5.0 21 82-102 61-81 (87)
376 PF01380 SIS: SIS domain SIS d 35.7 77 0.0017 22.8 4.4 83 6-103 5-88 (131)
377 PLN02958 diacylglycerol kinase 35.5 69 0.0015 29.7 4.9 66 5-73 110-180 (481)
378 TIGR03542 DAPAT_plant LL-diami 35.3 3E+02 0.0066 24.4 9.0 38 60-98 172-209 (402)
379 TIGR01011 rpsB_bact ribosomal 35.3 50 0.0011 27.3 3.5 31 61-102 155-185 (225)
380 PF00318 Ribosomal_S2: Ribosom 35.0 46 0.00099 27.2 3.3 30 62-102 144-173 (211)
381 PF08937 DUF1863: MTH538 TIR-l 34.7 40 0.00087 25.0 2.7 41 59-104 68-108 (130)
382 PRK10697 DNA-binding transcrip 34.6 28 0.00061 25.7 1.8 20 94-116 14-33 (118)
383 PRK06830 diphosphate--fructose 34.6 1.3E+02 0.0028 27.7 6.4 67 35-115 64-132 (443)
384 PRK07590 L,L-diaminopimelate a 34.3 3.2E+02 0.0069 24.3 9.0 38 60-98 175-212 (409)
385 COG1879 RbsB ABC-type sugar tr 34.0 3E+02 0.0064 23.4 8.8 83 7-102 34-123 (322)
386 PRK01390 murD UDP-N-acetylmura 34.0 1E+02 0.0022 28.2 5.7 56 5-71 8-75 (460)
387 cd06314 PBP1_tmGBP Periplasmic 33.8 73 0.0016 26.2 4.5 79 8-101 1-85 (271)
388 PF04024 PspC: PspC domain; I 33.7 33 0.00071 22.1 1.8 18 94-114 9-26 (61)
389 PRK10936 TMAO reductase system 33.5 1.5E+02 0.0033 25.7 6.6 82 6-101 46-134 (343)
390 cd06334 PBP1_ABC_ligand_bindin 33.3 2.4E+02 0.0052 24.6 7.8 82 6-103 140-229 (351)
391 PRK04020 rps2P 30S ribosomal p 32.7 57 0.0012 26.6 3.4 31 61-102 114-144 (204)
392 PRK06425 histidinol-phosphate 32.7 1.5E+02 0.0032 25.7 6.3 65 32-98 92-158 (332)
393 COG0420 SbcD DNA repair exonuc 32.4 93 0.002 27.7 5.1 44 61-104 40-84 (390)
394 PRK05299 rpsB 30S ribosomal pr 32.3 57 0.0012 27.6 3.5 31 61-102 157-187 (258)
395 cd03332 LMO_FMN L-Lactate 2-mo 32.2 1.5E+02 0.0033 26.7 6.3 59 60-118 273-335 (383)
396 PRK10892 D-arabinose 5-phospha 31.9 3.2E+02 0.007 23.5 8.3 83 7-104 48-130 (326)
397 PRK01710 murD UDP-N-acetylmura 31.8 2.2E+02 0.0048 26.0 7.6 31 6-47 14-44 (458)
398 TIGR02826 RNR_activ_nrdG3 anae 31.6 90 0.002 23.9 4.2 31 62-99 62-92 (147)
399 cd06287 PBP1_LacI_like_8 Ligan 31.5 1.4E+02 0.003 24.8 5.8 40 29-70 26-65 (269)
400 TIGR02717 AcCoA-syn-alpha acet 31.4 4.1E+02 0.0089 24.3 9.5 38 4-48 5-42 (447)
401 COG0391 Uncharacterized conser 31.3 1E+02 0.0022 27.1 4.8 41 59-102 187-228 (323)
402 PF06018 CodY: CodY GAF-like d 31.2 1.7E+02 0.0036 23.3 5.7 53 171-227 29-81 (177)
403 PRK15404 leucine ABC transport 31.1 2.2E+02 0.0047 25.1 7.2 81 6-102 161-249 (369)
404 PF01070 FMN_dh: FMN-dependent 31.1 1.2E+02 0.0027 26.9 5.5 60 60-119 245-308 (356)
405 PF04007 DUF354: Protein of un 30.8 1E+02 0.0023 27.1 5.0 88 28-116 15-106 (335)
406 PLN02204 diacylglycerol kinase 30.8 1.3E+02 0.0028 28.9 5.8 66 4-73 157-230 (601)
407 PF00763 THF_DHG_CYH: Tetrahyd 30.8 76 0.0016 23.2 3.6 58 6-68 29-94 (117)
408 PRK09739 hypothetical protein; 30.7 1.3E+02 0.0027 24.0 5.2 43 6-51 3-45 (199)
409 PLN02884 6-phosphofructokinase 30.7 77 0.0017 28.8 4.2 44 61-111 143-201 (411)
410 cd06313 PBP1_ABC_sugar_binding 30.7 1.4E+02 0.003 24.7 5.6 80 9-101 2-86 (272)
411 cd01422 MGS Methylglyoxal synt 30.6 2.1E+02 0.0046 20.7 6.6 88 9-99 2-105 (115)
412 cd01391 Periplasmic_Binding_Pr 29.8 1.7E+02 0.0036 23.1 5.9 81 8-102 1-89 (269)
413 TIGR00768 rimK_fam alpha-L-glu 29.8 2.1E+02 0.0047 23.6 6.7 53 8-69 1-56 (277)
414 PHA02698 hypothetical protein; 29.6 48 0.001 22.3 2.0 36 193-228 40-78 (89)
415 PF04392 ABC_sub_bind: ABC tra 29.5 70 0.0015 27.2 3.7 85 6-102 131-218 (294)
416 PRK15482 transcriptional regul 29.5 2.2E+02 0.0047 24.1 6.7 83 6-103 135-217 (285)
417 smart00870 Asparaginase Aspara 29.4 1E+02 0.0022 26.9 4.7 36 60-101 234-270 (323)
418 PRK09461 ansA cytoplasmic aspa 29.4 1.2E+02 0.0025 26.8 5.1 38 60-101 232-270 (335)
419 PF07085 DRTGG: DRTGG domain; 29.4 88 0.0019 22.0 3.7 35 60-104 60-94 (105)
420 TIGR01839 PHA_synth_II poly(R) 29.3 1.6E+02 0.0035 28.0 6.2 64 30-110 237-304 (560)
421 PRK05234 mgsA methylglyoxal sy 29.3 2.6E+02 0.0055 21.2 7.2 104 6-113 4-124 (142)
422 cd06356 PBP1_Amide_Urea_BP_lik 29.3 2E+02 0.0043 24.7 6.6 59 6-70 132-196 (334)
423 cd05565 PTS_IIB_lactose PTS_II 29.2 1.4E+02 0.003 21.3 4.5 36 31-68 19-54 (99)
424 PRK06242 flavodoxin; Provision 29.2 1.8E+02 0.004 21.6 5.7 13 57-69 39-51 (150)
425 PRK09267 flavodoxin FldA; Vali 29.2 2.6E+02 0.0057 21.4 7.8 14 57-70 42-55 (169)
426 PRK09590 celB cellobiose phosp 29.1 1.4E+02 0.0031 21.3 4.7 56 7-68 2-57 (104)
427 cd06286 PBP1_CcpB_like Ligand- 29.1 1.3E+02 0.0028 24.4 5.2 58 9-70 2-64 (260)
428 PRK07236 hypothetical protein; 29.0 87 0.0019 27.7 4.3 36 1-47 1-36 (386)
429 PF07380 Pneumo_M2: Pneumoviru 28.8 78 0.0017 21.5 2.9 54 172-228 20-73 (89)
430 TIGR02637 RhaS rhamnose ABC tr 28.6 1.8E+02 0.004 24.4 6.2 33 60-101 55-87 (302)
431 PRK05294 carB carbamoyl phosph 28.5 1.7E+02 0.0037 30.2 6.8 46 5-50 553-598 (1066)
432 COG5426 Uncharacterized membra 28.4 1.1E+02 0.0024 24.8 4.2 79 30-108 35-125 (254)
433 KOG1116 Sphingosine kinase, in 28.1 84 0.0018 29.7 4.1 67 5-74 178-249 (579)
434 PRK08811 uroporphyrinogen-III 28.1 80 0.0017 26.7 3.7 80 30-117 31-117 (266)
435 PRK11557 putative DNA-binding 28.0 1.8E+02 0.0039 24.4 5.9 81 6-103 128-210 (278)
436 COG1597 LCB5 Sphingosine kinas 27.9 1.3E+02 0.0028 26.0 5.0 77 28-114 21-103 (301)
437 PRK02006 murD UDP-N-acetylmura 27.8 2.7E+02 0.006 25.7 7.5 33 4-47 5-37 (498)
438 KOG1838 Alpha/beta hydrolase [ 27.6 4.4E+02 0.0096 24.0 8.4 71 27-113 141-217 (409)
439 KOG3093 5-formyltetrahydrofola 27.4 62 0.0013 25.9 2.7 49 61-109 128-182 (200)
440 TIGR03407 urea_ABC_UrtA urea A 27.2 2.4E+02 0.0053 24.5 6.8 82 7-104 135-227 (359)
441 COG0252 AnsB L-asparaginase/ar 27.2 1.1E+02 0.0023 27.3 4.4 36 60-101 253-289 (351)
442 PRK14106 murD UDP-N-acetylmura 27.1 4E+02 0.0086 24.1 8.4 35 3-48 2-36 (450)
443 TIGR00237 xseA exodeoxyribonuc 27.0 95 0.0021 28.4 4.2 44 60-106 186-229 (432)
444 cd07014 S49_SppA Signal peptid 26.8 1.3E+02 0.0028 23.4 4.6 23 82-104 58-80 (177)
445 COG1570 XseA Exonuclease VII, 26.7 3.2E+02 0.0069 25.2 7.4 39 59-99 191-229 (440)
446 cd06311 PBP1_ABC_sugar_binding 26.4 76 0.0016 26.1 3.3 33 60-101 59-91 (274)
447 PRK03369 murD UDP-N-acetylmura 26.4 1.8E+02 0.004 26.9 6.1 13 59-71 68-80 (488)
448 COG0794 GutQ Predicted sugar p 26.4 3.6E+02 0.0077 22.0 8.2 65 30-104 55-122 (202)
449 cd06349 PBP1_ABC_ligand_bindin 26.3 3E+02 0.0066 23.5 7.2 80 6-101 135-222 (340)
450 PF10740 DUF2529: Protein of u 26.3 1.2E+02 0.0026 24.0 4.0 38 58-102 78-115 (172)
451 PRK14573 bifunctional D-alanyl 26.1 2.6E+02 0.0056 27.8 7.4 55 7-71 5-73 (809)
452 cd06329 PBP1_SBP_like_3 Peripl 25.8 2.7E+02 0.0059 23.9 6.8 82 6-103 143-235 (342)
453 cd06360 PBP1_alkylbenzenes_lik 25.8 3.3E+02 0.0072 23.0 7.3 59 6-70 134-198 (336)
454 TIGR02153 gatD_arch glutamyl-t 25.3 1.3E+02 0.0027 27.4 4.6 36 60-101 298-334 (404)
455 PRK11337 DNA-binding transcrip 25.2 1.9E+02 0.0042 24.4 5.7 21 82-102 201-221 (292)
456 cd06294 PBP1_ycjW_transcriptio 25.1 1.1E+02 0.0023 25.0 4.0 41 30-70 24-69 (270)
457 cd01832 SGNH_hydrolase_like_1 25.1 2.9E+02 0.0064 21.0 6.3 76 26-101 23-111 (185)
458 cd06345 PBP1_ABC_ligand_bindin 25.0 4E+02 0.0087 22.8 7.8 60 6-71 144-209 (344)
459 PRK04183 glutamyl-tRNA(Gln) am 24.8 1.3E+02 0.0029 27.4 4.7 36 60-101 311-347 (419)
460 PF00710 Asparaginase: Asparag 24.7 1.1E+02 0.0024 26.5 4.1 37 60-102 223-260 (313)
461 PF12641 Flavodoxin_3: Flavodo 24.5 3.4E+02 0.0073 21.0 7.0 41 59-103 37-77 (160)
462 cd06290 PBP1_LacI_like_9 Ligan 24.2 1.8E+02 0.0039 23.6 5.2 58 9-70 2-64 (265)
463 PF00781 DAGK_cat: Diacylglyce 24.2 1.6E+02 0.0034 21.5 4.4 42 30-71 18-64 (130)
464 cd00411 Asparaginase Asparagin 24.2 1.4E+02 0.0031 26.0 4.7 36 60-101 232-268 (323)
465 PRK03620 5-dehydro-4-deoxygluc 23.8 1.7E+02 0.0036 25.2 5.0 44 60-103 40-85 (303)
466 PRK03806 murD UDP-N-acetylmura 23.8 5.4E+02 0.012 23.2 8.6 36 1-47 1-36 (438)
467 cd06259 YdcF-like YdcF-like. Y 23.7 2.2E+02 0.0049 21.1 5.3 42 63-104 1-43 (150)
468 PLN02699 Bifunctional molybdop 23.5 1.9E+02 0.004 28.2 5.6 65 5-72 457-535 (659)
469 PRK09257 aromatic amino acid a 23.4 2.4E+02 0.0051 25.0 6.1 67 32-98 133-208 (396)
470 PRK06348 aspartate aminotransf 23.4 3.7E+02 0.0081 23.6 7.4 65 33-98 127-198 (384)
471 PF08901 DUF1847: Protein of u 23.4 2.2E+02 0.0047 22.2 4.9 95 4-111 53-148 (157)
472 PF02056 Glyco_hydro_4: Family 23.3 67 0.0014 25.7 2.2 33 32-68 48-80 (183)
473 PRK14573 bifunctional D-alanyl 23.2 5.2E+02 0.011 25.7 8.9 45 4-50 449-493 (809)
474 cd00363 PFK Phosphofructokinas 23.2 1.4E+02 0.0029 26.4 4.4 41 64-109 4-44 (338)
475 TIGR03567 FMN_reduc_SsuE FMN r 23.2 3.5E+02 0.0077 20.8 8.4 39 8-49 1-39 (171)
476 PRK04663 murD UDP-N-acetylmura 23.0 5.7E+02 0.012 23.1 8.6 13 59-71 66-78 (438)
477 PRK09147 succinyldiaminopimela 22.9 3.4E+02 0.0073 24.0 7.0 65 33-98 131-202 (396)
478 PRK12311 rpsB 30S ribosomal pr 22.8 1E+02 0.0023 27.1 3.5 31 61-102 152-182 (326)
479 TIGR00583 mre11 DNA repair pro 22.4 2E+02 0.0043 26.2 5.3 13 60-72 41-53 (405)
480 PRK11041 DNA-binding transcrip 22.4 77 0.0017 26.7 2.6 61 6-70 35-100 (309)
481 PF02662 FlpD: Methyl-viologen 22.3 3.3E+02 0.0071 20.1 6.1 52 41-92 27-86 (124)
482 TIGR02482 PFKA_ATP 6-phosphofr 22.3 1.3E+02 0.0028 26.1 4.0 41 64-109 3-43 (301)
483 PRK10339 DNA-binding transcrip 22.2 3.2E+02 0.0069 23.2 6.5 36 30-69 87-122 (327)
484 PF01866 Diphthamide_syn: Puta 22.2 1.5E+02 0.0034 25.6 4.5 63 5-72 208-271 (307)
485 PRK00286 xseA exodeoxyribonucl 22.1 2E+02 0.0044 26.1 5.5 36 62-99 193-228 (438)
486 cd06346 PBP1_ABC_ligand_bindin 22.1 3.4E+02 0.0075 22.9 6.7 79 6-100 137-223 (312)
487 COG0449 GlmS Glucosamine 6-pho 22.0 6E+02 0.013 24.5 8.5 22 83-104 345-366 (597)
488 cd01424 MGS_CPS_II Methylglyox 22.0 1.9E+02 0.0041 20.4 4.3 61 33-99 36-99 (110)
489 PF09314 DUF1972: Domain of un 22.0 4.2E+02 0.009 21.2 10.6 58 7-68 2-62 (185)
490 PRK14072 6-phosphofructokinase 21.9 97 0.0021 28.2 3.2 34 61-101 103-138 (416)
491 TIGR00520 asnASE_II L-asparagi 21.8 1.6E+02 0.0036 26.1 4.6 35 61-101 262-297 (349)
492 PRK06555 pyrophosphate--fructo 21.8 1.2E+02 0.0025 27.6 3.7 34 61-101 112-147 (403)
493 PF13806 Rieske_2: Rieske-like 21.7 2.2E+02 0.0047 20.3 4.5 30 164-193 10-40 (104)
494 TIGR02978 phageshock_pspC phag 21.6 41 0.00088 25.0 0.6 20 94-116 9-28 (121)
495 PRK13410 molecular chaperone D 21.4 1.6E+02 0.0035 28.7 4.8 49 60-115 327-380 (668)
496 PF14403 CP_ATPgrasp_2: Circul 21.3 1.6E+02 0.0035 27.1 4.5 51 6-70 185-235 (445)
497 PRK14619 NAD(P)H-dependent gly 21.3 1.2E+02 0.0026 26.1 3.6 52 5-69 3-55 (308)
498 COG1832 Predicted CoA-binding 21.2 1.7E+02 0.0037 22.3 3.9 85 5-106 15-108 (140)
499 PRK05752 uroporphyrinogen-III 21.2 2.6E+02 0.0057 23.1 5.6 53 6-69 130-190 (255)
500 PRK15395 methyl-galactoside AB 21.2 1.9E+02 0.0042 24.9 5.0 83 6-101 24-112 (330)
No 1
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.1e-52 Score=323.67 Aligned_cols=243 Identities=57% Similarity=1.030 Sum_probs=227.2
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
|..+|||++.+.++++++..+||+|.++++.+|.+.|..|+.+++..+++|+.++|++|||+||+|+..+++++.+|+..
T Consensus 2 ~~~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~d~dWI~K 81 (245)
T KOG3179|consen 2 MEQKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFSDADWIKK 81 (245)
T ss_pred ccceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcccccccchHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecC-CCCCCcccccCCCCCceEEEeeecccc
Q 025645 84 LCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVND-LAPCSFLEDLGEIPGSLSIMECHRDEV 162 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~-~~~~~l~~~~~~l~~~~~~~~~H~~~v 162 (250)
+..+++.....++||+|||+|||+||++.||+|.|++++++++...+++... .....+|+. +|..+.+..+|+|+|
T Consensus 82 Lcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgra~KG~~~~lg~itivk~~~~~~~yFG~---~~~~l~IikcHqDev 158 (245)
T KOG3179|consen 82 LCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGRAPKGPDLGLGSITIVKDAEKPEKYFGE---IPKSLNIIKCHQDEV 158 (245)
T ss_pred HHHHHHHHHhhccceEEEeccHHHHHHhhCCccccCCCCCcccccceEEEEecccchhhccc---chhhhhHHhhcccce
Confidence 9999999999999999999999999999999999999997777666655432 245678886 789999999999999
Q ss_pred cccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCHHHHHHHHHHHhcCCCccHHHHHHHHhhccccCCcHHHHHHHH
Q 025645 163 WKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTKDILYNLIDRLLNNNSIEREFAENAKFGLEIAEPDRKCWEKIC 242 (250)
Q Consensus 163 ~~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (250)
..+|++++++|+|+.|.+++|..+++++++|+||||+.+++...++.+.....+.++|.+.+++.++..++|+..+..||
T Consensus 159 le~PE~a~llasSe~ceve~fs~~~~~l~fQGHPEyn~eil~~ivdrv~~~k~~~eef~~~ak~~~En~~~d~~~~~~ic 238 (245)
T KOG3179|consen 159 LELPEGAELLASSEKCEVEMFSIEDHLLCFQGHPEYNKEILFEIVDRVLGTKLVEEEFAEKAKKTMENPEPDRQLAVSIC 238 (245)
T ss_pred ecCCchhhhhccccccceEEEEecceEEEecCCchhhHHHHHHHHHHHhcchhhHHHHHHHHHHhhhCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred HHHhccC
Q 025645 243 RNFLKGT 249 (250)
Q Consensus 243 ~~f~~~~ 249 (250)
.+||+.|
T Consensus 239 KnfLkgr 245 (245)
T KOG3179|consen 239 KNFLKGR 245 (245)
T ss_pred HHHhccC
Confidence 9999986
No 2
>PRK05665 amidotransferase; Provisional
Probab=100.00 E-value=1.6e-47 Score=318.51 Aligned_cols=232 Identities=29% Similarity=0.535 Sum_probs=208.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCC--ceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGE--RWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
+|||+||.++...+.+.+.|++|.++|.++|...+. ++.++.+..+++|. +++++||+||+||+.+++++.+|+..
T Consensus 2 ~mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~--~~~~~dgiiitGs~~~v~~~~pwi~~ 79 (240)
T PRK05665 2 SLRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPA--DDEKFDAYLVTGSKADSFGTDPWIQT 79 (240)
T ss_pred ceEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCC--CcccCCEEEECCCCCCccccchHHHH
Confidence 367999999999999999999999999999998885 45666666666654 57789999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc
Q 025645 84 LCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW 163 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~ 163 (250)
+.++|+.+.+.++|+||||+|||+||.++||+|.+.+.+++.|+..+++++ ..++|.. +++.+.++++|+|.|.
T Consensus 80 l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G~e~G~~~~~~~~---~~~~~~~---~~~~~~~~~~H~D~V~ 153 (240)
T PRK05665 80 LKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQGWGVGIHRYQLAA---HAPWMSP---AVTELTLLISHQDQVT 153 (240)
T ss_pred HHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCCcccceEEEEecC---CCccccC---CCCceEEEEEcCCeee
Confidence 999999999999999999999999999999999999999999999999875 3467777 7889999999999999
Q ss_pred ccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCHHHHHHHHHHHhcCCCccHHHHHHHHhhccccCCcHHHHHHHHH
Q 025645 164 KVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTKDILYNLIDRLLNNNSIEREFAENAKFGLEIAEPDRKCWEKICR 243 (250)
Q Consensus 164 ~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (250)
.+|+++++||+|+.|++|+++.++++||+|||||++...++.+++..+ ..++++.++++.+++.... |.....+++.
T Consensus 154 ~LP~ga~~La~s~~~~~q~~~~~~~~~g~QfHPE~~~~~~~~~l~~~~--~~~~~~~~~~~~~~l~~~~-d~~~~a~~l~ 230 (240)
T PRK05665 154 ALPEGATVIASSDFCPFAAYHIGDQVLCFQGHPEFVHDYSRALLDLRQ--EHLGEEVYSKGVASLAHDH-QGTTVAEWMM 230 (240)
T ss_pred eCCCCcEEEEeCCCCcEEEEEeCCCEEEEecCCcCcHHHHHHHHHHhh--hhcCHHHHHHHHHHcCCCC-CHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998764 4578888899999887644 7788999999
Q ss_pred HHhcc
Q 025645 244 NFLKG 248 (250)
Q Consensus 244 ~f~~~ 248 (250)
||++.
T Consensus 231 ~F~~~ 235 (240)
T PRK05665 231 RFVAQ 235 (240)
T ss_pred HHhcc
Confidence 99975
No 3
>PRK09065 glutamine amidotransferase; Provisional
Probab=100.00 E-value=7.9e-46 Score=308.69 Aligned_cols=231 Identities=25% Similarity=0.371 Sum_probs=199.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
+||+||.++.+.+.+.+.|++|.++|.+.+...|.++.++++..++.+ .++.++|||||+||+.+++++.+|+..+.+
T Consensus 2 ~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~ 79 (237)
T PRK09065 2 KPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGEPL--PAPDDFAGVIITGSWAMVTDRLDWSERTAD 79 (237)
T ss_pred CcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCCCCC--CChhhcCEEEEeCCCcccCCCchhHHHHHH
Confidence 469999999998999999999999999999999999999988765422 246789999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccccC
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVP 166 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~lp 166 (250)
+|+.+.+.++||||||+|||+|+.++||+|.+.+.+++.|+..|++++.+..+++|++ +|+.+.++++|++.|..+|
T Consensus 80 ~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~g~e~G~~~v~~~~~~~~~~l~~~---~~~~~~v~~~H~d~v~~lp 156 (237)
T PRK09065 80 WLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPAGRESGTVTVELHPAAADDPLFAG---LPAQFPAHLTHLQSVLRLP 156 (237)
T ss_pred HHHHHHHCCCCEEEEChhHHHHHHHcCCccccCCCCCccceEEEEEccccccChhhhc---CCccCcEeeehhhhhhhCC
Confidence 9999999999999999999999999999999988889999999999977667789988 7889999999999998999
Q ss_pred CccEEEEEcCCCceEEEEECCcEEEEecCCCCCHHHHHHHHHHHhcCCCccHH--HHHHHHhhccccCCcHHHHHHHHHH
Q 025645 167 IGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTKDILYNLIDRLLNNNSIERE--FAENAKFGLEIAEPDRKCWEKICRN 244 (250)
Q Consensus 167 ~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (250)
++++++|++++|.++++++++++||+|||||++..+++.|++.... .+.+. ..++.++.. .+....+.++.|
T Consensus 157 ~~~~~la~s~~~~iqa~~~~~~i~gvQfHPE~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~l~~~ 230 (237)
T PRK09065 157 PGAVVLARSAQDPHQAFRYGPHAWGVQFHPEFTAHIMRAYLRARAD--CLRREGLDARTLLREV----SEAPWARKLLRR 230 (237)
T ss_pred CCCEEEEcCCCCCeeEEEeCCCEEEEEeCCcCCHHHHHHHHHhhHH--HhhhcCcCHHHHHhhh----cccHHHHHHHHH
Confidence 9999999999999999999889999999999999999999875421 12111 123332222 346678999999
Q ss_pred Hhcc
Q 025645 245 FLKG 248 (250)
Q Consensus 245 f~~~ 248 (250)
|++.
T Consensus 231 f~~~ 234 (237)
T PRK09065 231 FVRL 234 (237)
T ss_pred HHHH
Confidence 9864
No 4
>PRK07567 glutamine amidotransferase; Provisional
Probab=100.00 E-value=6.5e-41 Score=279.68 Aligned_cols=227 Identities=24% Similarity=0.378 Sum_probs=182.1
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCc---eEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCC----Chh
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGER---WDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGN----DNW 80 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~----~~~ 80 (250)
+|+||.+++. +.+.. +. +..++++.|.. +.++++...+.+. .+++++|||||+||+.+++++ .+|
T Consensus 3 ~ililq~~~~-~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dgvIi~Gg~~~~~d~~~~~~pw 74 (242)
T PRK07567 3 PFLLLSPRPE-DEAAD--AE----YAAFLRYTGLDPAELRRIRLDREPLPD-LDLDDYSGVIVGGSPFNVSDPAESKSPW 74 (242)
T ss_pred cEEEEecCCC-ccccc--ch----HHHHHHhcCCCccceEEEecccCCCCC-CCHhhccEEEEcCCCCcCCCCCCccchH
Confidence 4899998876 33221 33 44555566655 6666665554332 357889999999999999886 689
Q ss_pred HHHHHHH----HHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEe
Q 025645 81 ILKLCFM----LQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIME 156 (250)
Q Consensus 81 ~~~~~~~----i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~ 156 (250)
+..+... ++.+.+.++||||||+|||+|+.++||+|.+ +.+++.|+.++++++.+..+++|.+ +|..+.+++
T Consensus 75 ~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~-~~g~e~G~~~v~l~~~g~~~~l~~~---~~~~~~~~~ 150 (242)
T PRK07567 75 QRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR-TYGEPVGAVTVSLTDAGRADPLLAG---LPDTFTAFV 150 (242)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec-CCCCcCccEEEEECCccCCChhhcC---CCCceEEEe
Confidence 8765554 4455588999999999999999999999998 5678999999999987667889987 788999999
Q ss_pred eecccccccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCHHHHHHHHHHHhcCCCccHHHHHHHHhhccccCCcHH
Q 025645 157 CHRDEVWKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTKDILYNLIDRLLNNNSIEREFAENAKFGLEIAEPDRK 236 (250)
Q Consensus 157 ~H~~~v~~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (250)
+|++.|..+|++++++|++++|.++++++++++||+|||||++...+..++..........++.+++..+.... .+..
T Consensus 151 ~H~d~V~~lp~~~~vlA~s~~~~vqa~~~~~~~~gvQfHPE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 228 (242)
T PRK07567 151 GHKEAVSALPPGAVLLATSPTCPVQMFRVGENVYATQFHPELDADGLKTRIDFYRDHGYFAPEEADSLIARARS--VDVT 228 (242)
T ss_pred ehhhhhhhCCCCCEEEEeCCCCCEEEEEeCCCEEEEEeCCcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHhccc--cCch
Confidence 99999999999999999999999999999889999999999999999999876655555566667776665433 3566
Q ss_pred HHHHHHHHHhcc
Q 025645 237 CWEKICRNFLKG 248 (250)
Q Consensus 237 ~~~~~~~~f~~~ 248 (250)
..+.++.+|+..
T Consensus 229 ~~~~~~~~f~~~ 240 (242)
T PRK07567 229 APNRILRNFVER 240 (242)
T ss_pred hHHHHHHHHHHH
Confidence 789999999864
No 5
>PRK06490 glutamine amidotransferase; Provisional
Probab=100.00 E-value=3.1e-41 Score=280.98 Aligned_cols=223 Identities=26% Similarity=0.333 Sum_probs=178.4
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHH
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKL 84 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~ 84 (250)
.++||.||...... +..+++++|++.|.++.++++..++ +.+++++++||+||+||+.+++++.+|+..+
T Consensus 6 ~~~~vlvi~h~~~~---------~~g~l~~~l~~~g~~~~v~~~~~~~-~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~ 75 (239)
T PRK06490 6 DKRPVLIVLHQERS---------TPGRVGQLLQERGYPLDIRRPRLGD-PLPDTLEDHAGAVIFGGPMSANDPDDFIRRE 75 (239)
T ss_pred CCceEEEEecCCCC---------CChHHHHHHHHCCCceEEEeccCCC-CCCCcccccCEEEEECCCCCCCCCchHHHHH
Confidence 45789999755432 3467889999999999988876554 2334678899999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCc-eeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGW-DIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW 163 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~-~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~ 163 (250)
.++|+.+.+.++|+||||+|||+|+.++||+|.+.+.++ +.|+.++++++.+ +.+.. ++ ..++++|++. .
T Consensus 76 ~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~~e~G~~~i~~~~~~---~~~~~---~~--~~~~~~H~d~-~ 146 (239)
T PRK06490 76 IDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPDGRVEIGYYPLRPTEAG---RALMH---WP--EMVYHWHREG-F 146 (239)
T ss_pred HHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCCCCccceEEeEECCCc---ccccC---CC--CEEEEECCcc-c
Confidence 999999999999999999999999999999999988775 8999999998642 33344 43 3588999999 6
Q ss_pred ccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCHHHHHHHHHHHhcCCCccHHHHHHHHhhccccCCcHHHHHHHHH
Q 025645 164 KVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTKDILYNLIDRLLNNNSIEREFAENAKFGLEIAEPDRKCWEKICR 243 (250)
Q Consensus 164 ~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (250)
.+|++++++|+|++|++++|++++++||+|||||++.++++.|++.... .+..+-.++..+++.....+...++.+++
T Consensus 147 ~lP~~~~~LA~s~~~~~qa~~~~~~v~g~QfHPE~~~~~~~~~i~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 224 (239)
T PRK06490 147 DLPAGAELLATGDDFPNQAFRYGDNAWGLQFHPEVTRAMMHRWVVRGAH--RLTLPGAQPRRAHLEGRLLHDAALRAWLE 224 (239)
T ss_pred cCCCCCEEEEeCCCCCeEEEEeCCCEEEEeeCccCCHHHHHHHHHhCch--hhcccCCCchHHHHHhhhhcCHHHHHHHH
Confidence 8999999999999999999999889999999999999999999875422 22223223444444443335567788888
Q ss_pred HHhcc
Q 025645 244 NFLKG 248 (250)
Q Consensus 244 ~f~~~ 248 (250)
+|++.
T Consensus 225 ~fl~~ 229 (239)
T PRK06490 225 AFLDH 229 (239)
T ss_pred HHHHH
Confidence 88763
No 6
>PRK07053 glutamine amidotransferase; Provisional
Probab=100.00 E-value=2.3e-39 Score=268.87 Aligned_cols=223 Identities=20% Similarity=0.274 Sum_probs=179.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCC--ChhHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGN--DNWILKL 84 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~--~~~~~~~ 84 (250)
+||.||+.....+ .+.+.++|++.|.+++++++..++.+. .++.++|+|||+|||.+++++ .+|+..+
T Consensus 3 ~~ilviqh~~~e~---------~g~i~~~L~~~g~~~~v~~~~~~~~~~-~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~ 72 (234)
T PRK07053 3 KTAVAIRHVAFED---------LGSFEQVLGARGYRVRYVDVGVDDLET-LDALEPDLLVVLGGPIGVYDDELYPFLAPE 72 (234)
T ss_pred ceEEEEECCCCCC---------ChHHHHHHHHCCCeEEEEecCCCccCC-CCccCCCEEEECCCCCCCCCCCcCCcHHHH
Confidence 6899998665543 255789999999999999876665532 346789999999999999876 4899999
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccc
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWK 164 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~ 164 (250)
.++|+.+.+.++|+||||+|||+|+.++||+|.+.+ ++++|+.+|++++.+..++++ + ++..+.++++|++.+ .
T Consensus 73 ~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~-~~e~G~~~i~~t~~g~~~pl~-~---~~~~~~~~~~H~d~~-~ 146 (234)
T PRK07053 73 IALLRQRLAAGLPTLGICLGAQLIARALGARVYPGG-QKEIGWAPLTLTDAGRASPLR-H---LGAGTPVLHWHGDTF-D 146 (234)
T ss_pred HHHHHHHHHCCCCEEEECccHHHHHHHcCCcEecCC-CCeEeEEEEEEeccccCChhh-c---CCCcceEEEEeCCEE-e
Confidence 999999999999999999999999999999999864 589999999999876667764 4 677889999999997 7
Q ss_pred cCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCHHHHHHHHHHH----hcCCCccHHHHHHHHhhccccCCcHHHHHH
Q 025645 165 VPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTKDILYNLIDRL----LNNNSIEREFAENAKFGLEIAEPDRKCWEK 240 (250)
Q Consensus 165 lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (250)
+|++++++|+|+.|++|+|+.++++||+|||||++..+++.|+... .+.+.-.++..+......+. ..+..++
T Consensus 147 lP~ga~~La~s~~~~~qaf~~g~~~~g~QfHpE~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 223 (234)
T PRK07053 147 LPEGATLLASTPACRHQAFAWGNHVLALQFHPEAREDRFEAWLIGHAGELAAAGIDPRTLRADTAQHGPA---LEAAARR 223 (234)
T ss_pred cCCCCEEEEcCCCCCeeEEEeCCCEEEEeeCccCCHHHHHHHHHhChHHHHhcCCCHHHHHHHHHHHHHH---HHHHHHH
Confidence 9999999999999999999998899999999999999999998632 22232233334333222222 3445688
Q ss_pred HHHHHhcc
Q 025645 241 ICRNFLKG 248 (250)
Q Consensus 241 ~~~~f~~~ 248 (250)
++.+|+..
T Consensus 224 ~~~~~~~~ 231 (234)
T PRK07053 224 MFGEWLDR 231 (234)
T ss_pred HHHHHHHH
Confidence 88888864
No 7
>PRK08250 glutamine amidotransferase; Provisional
Probab=100.00 E-value=1.7e-39 Score=270.13 Aligned_cols=225 Identities=17% Similarity=0.210 Sum_probs=177.3
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCC---CCChhH--
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAY---GNDNWI-- 81 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~---~~~~~~-- 81 (250)
|||+||......+. +.+..++++.|+++.++.+..++ +.+.+++++|||||+||+.+++ ++.+|+
T Consensus 1 m~i~vi~h~~~e~~---------g~~~~~~~~~g~~~~~~~~~~g~-~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~ 70 (235)
T PRK08250 1 MRVHFIIHESFEAP---------GAYLKWAENRGYDISYSRVYAGE-ALPENADGFDLLIVMGGPQSPRTTREECPYFDS 70 (235)
T ss_pred CeEEEEecCCCCCc---------hHHHHHHHHCCCeEEEEEccCCC-CCCCCccccCEEEECCCCCChhhccccccccch
Confidence 57888886554331 34667888899999988877654 2333567899999999998854 356888
Q ss_pred HHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccc
Q 025645 82 LKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDE 161 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~ 161 (250)
..+.++|+.+.+.++|+||||+|+|+|+.++||+|.+.+. ++.|+.+|++++.+..+++|++ +|+.+.++++|++.
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~-~e~G~~~v~lt~~g~~d~l~~~---~~~~~~v~~~H~d~ 146 (235)
T PRK08250 71 KAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSPE-KEIGYFPITLTEAGLKDPLLSH---FGSTLTVGHWHNDM 146 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCCC-CceeEEEEEEccccccCchhhc---CCCCcEEEEEecce
Confidence 6788999999999999999999999999999999998876 7999999999988778889988 88899999999997
Q ss_pred ccccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCHHHHHHHHHHHhcCCCccHHHHHHHHhhcc-ccCCcHHHHHH
Q 025645 162 VWKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTKDILYNLIDRLLNNNSIEREFAENAKFGLE-IAEPDRKCWEK 240 (250)
Q Consensus 162 v~~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 240 (250)
+ .+|+++++||+|+.|++|+++.++++||+|||||++..+++.|++.... .+.....+...++.. ....+....++
T Consensus 147 ~-~lP~~a~~LA~s~~~~~qa~~~~~~~~g~QfHPE~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (235)
T PRK08250 147 P-GLTDQAKVLATSEGCPRQIVQYSNLVYGFQCHMEFTVEAVELLIAHSQQ--ELSQAQGKRFVQSPEELRAWDYSEMNQ 223 (235)
T ss_pred e-cCCCCCEEEECCCCCCceEEEeCCCEEEEeecCcCCHHHHHHHHHhchh--hhhcccccccccCHHHHHhhhHHHHHH
Confidence 4 7999999999999999999999999999999999999999999875432 111111111122221 11124556788
Q ss_pred HHHHHhcc
Q 025645 241 ICRNFLKG 248 (250)
Q Consensus 241 ~~~~f~~~ 248 (250)
++.+|+..
T Consensus 224 ~l~~fl~~ 231 (235)
T PRK08250 224 KLFRFLDK 231 (235)
T ss_pred HHHHHHHH
Confidence 88898853
No 8
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.6e-38 Score=252.59 Aligned_cols=186 Identities=28% Similarity=0.492 Sum_probs=154.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
.+|+|++.+. .|++.+.+++++.|.....++....+... ....++||+||+|||.|++++.+|...+.+
T Consensus 2 ~~ilIld~g~----------q~~~li~r~~re~g~v~~e~~~~~~~~~~-~~~~~~~giIlsGgp~sv~~~~~w~~~~~~ 70 (198)
T COG0518 2 RKILILDFGG----------QYLGLIARRLRELGYVYSEIVPYTGDAEE-LPLDSPDGIIISGGPMSVYDEDPWLPREKD 70 (198)
T ss_pred cEEEEEeCCC----------cHhHHHHHHHHHcCCceEEEEeCCCCccc-ccccCCCEEEEcCCCCCCccccccchhHHH
Confidence 3677776543 46788899999999544444443333222 223456999999999999999989999999
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCce-EEEeeeccccccc
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSL-SIMECHRDEVWKV 165 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~-~~~~~H~~~v~~l 165 (250)
+|+++...++||||||+|||+||.++||+|.+.+. .++|+.++++++ ..+++|.+ +|... .++++|+|.|.++
T Consensus 71 ~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~~-~E~G~~~v~~~~--~~~~l~~g---l~~~~~~v~~sH~D~v~~l 144 (198)
T COG0518 71 LIKDAGVPGKPVLGICLGHQLLAKALGGKVERGPK-REIGWTPVELTE--GDDPLFAG---LPDLFTTVFMSHGDTVVEL 144 (198)
T ss_pred HHHHhCCCCCCEEEEChhHHHHHHHhCCEEeccCC-CccceEEEEEec--CccccccC---CccccCccccchhCccccC
Confidence 99999888899999999999999999999999877 899999999985 23478888 77777 5999999999999
Q ss_pred CCccEEEEEcCCCceEEEEECCcEEEEecCCCCCHHHHHHHHHH
Q 025645 166 PIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTKDILYNLIDR 209 (250)
Q Consensus 166 p~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~~~~~~~~~~ 209 (250)
|++++++|+|+.|++++|++++++||+|||||++++....+++.
T Consensus 145 P~g~~vlA~s~~cp~qa~~~~~~~~gvQFHpEv~~~~~~~~l~n 188 (198)
T COG0518 145 PEGAVVLASSETCPNQAFRYGKRAYGVQFHPEVTHEYGEALLEN 188 (198)
T ss_pred CCCCEEEecCCCChhhheecCCcEEEEeeeeEEeHHHHHHHHHH
Confidence 99999999999999999999988999999999888666665554
No 9
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=100.00 E-value=2.3e-37 Score=249.94 Aligned_cols=183 Identities=34% Similarity=0.598 Sum_probs=159.7
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCC---CceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCC-CCCChhHHH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEG---ERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDA-YGNDNWILK 83 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~-~~~~~~~~~ 83 (250)
||+||.++...+ ...+.+++++.| .+++++++...+. ..+++++|||||+||+.+. ++..+|+..
T Consensus 1 ~i~il~~~~~~~---------~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~dgvil~Gg~~~~~~~~~~~~~~ 69 (188)
T cd01741 1 RILILQHDTPEG---------PGLFEDLLREAGAETIEIDVVDVYAGEL--LPDLDDYDGLVILGGPMSVDEDDYPWLKK 69 (188)
T ss_pred CEEEEECCCCCC---------cchHHHHHHhcCCCCceEEEEecCCCCC--CCCcccCCEEEECCCCccCCccCChHHHH
Confidence 689998877654 234678888888 6888888766554 3457899999999999888 677899999
Q ss_pred HHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc
Q 025645 84 LCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW 163 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~ 163 (250)
+.++++++.+.++|+||||+|||+|+.++||++.+.+.+++.|++++.+++.+..+++|++ +++.+.++++|++.|.
T Consensus 70 ~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~~~~~g~~~v~~~~~~~~~~l~~~---~~~~~~v~~~H~~~v~ 146 (188)
T cd01741 70 LKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPKGWEIGWFPVTLTEAGKADPLFAG---LPDEFPVFHWHGDTVV 146 (188)
T ss_pred HHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCCcceeEEEEEEeccccccCchhhc---CCCcceEEEEeccChh
Confidence 9999999999999999999999999999999999998888999999999977666778887 7889999999999998
Q ss_pred ccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCHHHHHHH
Q 025645 164 KVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTKDILYNL 206 (250)
Q Consensus 164 ~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~~~~~~~ 206 (250)
.+|++++++|++++|.+++++.++++||+||||| ..++++|
T Consensus 147 ~lp~~~~~la~~~~~~v~~~~~~~~~~g~QfHPE--~~~~~~f 187 (188)
T cd01741 147 ELPPGAVLLASSEACPNQAFRYGDRALGLQFHPE--ERLLRNF 187 (188)
T ss_pred hCCCCCEEeecCCCCCcceEEecCCEEEEccCch--HHHHhhh
Confidence 8999999999999999999999889999999999 6666655
No 10
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=100.00 E-value=4.6e-35 Score=236.70 Aligned_cols=178 Identities=22% Similarity=0.352 Sum_probs=146.1
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
|||+||+.. ++|+..++++|++.|.++.+++....+ +++++++|+|||+|||+++. +...+.+
T Consensus 2 ~~iliid~~----------dsf~~~i~~~l~~~g~~~~v~~~~~~~---~~~l~~~d~iIi~gGp~~~~----~~~~~~~ 64 (190)
T PRK06895 2 TKLLIINNH----------DSFTFNLVDLIRKLGVPMQVVNVEDLD---LDEVENFSHILISPGPDVPR----AYPQLFA 64 (190)
T ss_pred cEEEEEeCC----------CchHHHHHHHHHHcCCcEEEEECCccC---hhHhccCCEEEECCCCCChH----HhhHHHH
Confidence 688888532 346677899999999999988865432 33567899999999998642 2334566
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc--c
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW--K 164 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~--~ 164 (250)
+++. .+.++|+||||+|||+|+.++||+|.+.+...+.++..+... ..+++|++ +|+.+.++++|++.+. +
T Consensus 65 ~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~~~~g~~~~v~~~---~~~~l~~~---~~~~~~v~~~Hs~~v~~~~ 137 (190)
T PRK06895 65 MLER-YHQHKSILGVCLGHQTLCEFFGGELYNLNNVRHGQQRPLKVR---SNSPLFDG---LPEEFNIGLYHSWAVSEEN 137 (190)
T ss_pred HHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecCCCccCceEEEEEC---CCChhhhc---CCCceEEEcchhheecccc
Confidence 7776 567999999999999999999999998776667777887765 35789998 8899999999999985 5
Q ss_pred cCCccEEEEEcCCCceEEEEECC-cEEEEecCCC-----CCHHHHHHHHH
Q 025645 165 VPIGAEVIGFSDKTGVEMFTIGD-HILGIQGHPE-----YTKDILYNLID 208 (250)
Q Consensus 165 lp~~~~~la~s~~~~v~~~~~~~-~~~g~QfHPE-----~~~~~~~~~~~ 208 (250)
+|+++.+++.++++.++++++++ ++||+||||| .+..++++|++
T Consensus 138 lp~~l~~~a~~~~~~i~a~~~~~~pi~GvQFHPE~~~~~~g~~il~nf~~ 187 (190)
T PRK06895 138 FPTPLEITAVCDENVVMAMQHKTLPIYGVQFHPESYISEFGEQILRNWLA 187 (190)
T ss_pred cCCCeEEEEECCCCcEEEEEECCCCEEEEEeCCCcCCCcchHHHHHHHHh
Confidence 89999999999999999999877 6999999999 68899999986
No 11
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=100.00 E-value=1.3e-35 Score=240.23 Aligned_cols=174 Identities=24% Similarity=0.306 Sum_probs=138.5
Q ss_pred hCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 25 YGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 25 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
|++|+.++.++|++.|.++.+++......... ...++|||||+|||+++++... ..++++.+ +.++|+||||+|
T Consensus 8 ~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~-~~~~~d~iIlsgGP~~p~~~~~----~~~~i~~~-~~~~PvLGIClG 81 (195)
T PRK07649 8 YDSFTFNLVQFLGELGQELVVKRNDEVTISDI-ENMKPDFLMISPGPCSPNEAGI----SMEVIRYF-AGKIPIFGVCLG 81 (195)
T ss_pred CCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH-hhCCCCEEEECCCCCChHhCCC----chHHHHHh-cCCCCEEEEcHH
Confidence 34588889999999999998887543221111 1236899999999999876543 23444433 468999999999
Q ss_pred HHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc--ccCCccEEEEEcCCCceEE
Q 025645 105 HQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW--KVPIGAEVIGFSDKTGVEM 182 (250)
Q Consensus 105 ~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~--~lp~~~~~la~s~~~~v~~ 182 (250)
||+|+.++||+|.+.+...+.++..+... .+++|++ +|+.+.++++|++.|. .+|++++++|.++++.++|
T Consensus 82 ~Qlla~~lGg~V~~~~~~~~G~~~~i~~~----~~~lf~~---~~~~~~v~~~H~~~v~~~~lp~~~~~~a~s~~~~v~a 154 (195)
T PRK07649 82 HQSIAQVFGGEVVRAERLMHGKTSLMHHD----GKTIFSD---IPNPFTATRYHSLIVKKETLPDCLEVTSWTEEGEIMA 154 (195)
T ss_pred HHHHHHHcCCEEeeCCCcccCCeEEEEEC----CChhhcC---CCCCCEEEEechheEecccCCCCeEEEEEcCCCcEEE
Confidence 99999999999999877555555555543 4578998 7889999999999984 6999999999999999999
Q ss_pred EEECC-cEEEEecCCC-----CCHHHHHHHHHHHh
Q 025645 183 FTIGD-HILGIQGHPE-----YTKDILYNLIDRLL 211 (250)
Q Consensus 183 ~~~~~-~~~g~QfHPE-----~~~~~~~~~~~~~~ 211 (250)
+++++ ++||+||||| .+..++++|++.+.
T Consensus 155 ~~~~~~~i~gvQFHPE~~~t~~g~~il~nfl~~~~ 189 (195)
T PRK07649 155 IRHKTLPIEGVQFHPESIMTSHGKELLQNFIRKYS 189 (195)
T ss_pred EEECCCCEEEEEECCCCCCCccHHHHHHHHHHHhH
Confidence 99876 5999999999 56789999998763
No 12
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=1.3e-35 Score=239.06 Aligned_cols=171 Identities=23% Similarity=0.271 Sum_probs=137.4
Q ss_pred hCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 25 YGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 25 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
|++|+.+++++|++.|.++.+++....+..+. ...++|+|||+|||+++.+.. ...++++. .+.++|+||||+|
T Consensus 8 ~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~-~~~~~d~iils~GPg~p~~~~----~~~~~~~~-~~~~~PiLGIClG 81 (187)
T PRK08007 8 YDSFTWNLYQYFCELGADVLVKRNDALTLADI-DALKPQKIVISPGPCTPDEAG----ISLDVIRH-YAGRLPILGVCLG 81 (187)
T ss_pred CCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH-HhcCCCEEEEcCCCCChHHCC----ccHHHHHH-hcCCCCEEEECHH
Confidence 45688999999999999998887432111110 113689999999999986543 23455565 4568999999999
Q ss_pred HHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc--ccCCccEEEEEcCCCceEE
Q 025645 105 HQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW--KVPIGAEVIGFSDKTGVEM 182 (250)
Q Consensus 105 ~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~--~lp~~~~~la~s~~~~v~~ 182 (250)
||+||.++||++.+.+.+.+.++.++..+ .+++|.+ ++..+.++++|++.|. .+|++++++|.++++.+++
T Consensus 82 ~Q~la~a~Gg~v~~~~~~~~g~~~~v~~~----~~~l~~~---~~~~~~v~~~H~~~v~~~~lp~~~~v~a~~~~~~i~a 154 (187)
T PRK08007 82 HQAMAQAFGGKVVRAAKVMHGKTSPITHN----GEGVFRG---LANPLTVTRYHSLVVEPDSLPACFEVTAWSETREIMG 154 (187)
T ss_pred HHHHHHHcCCEEEeCCCcccCCceEEEEC----CCCcccC---CCCCcEEEEcchhEEccCCCCCCeEEEEEeCCCcEEE
Confidence 99999999999999887767777787765 3457887 7888999999999984 7999999999999999999
Q ss_pred EEECC-cEEEEecCCCC-----CHHHHHHHHH
Q 025645 183 FTIGD-HILGIQGHPEY-----TKDILYNLID 208 (250)
Q Consensus 183 ~~~~~-~~~g~QfHPE~-----~~~~~~~~~~ 208 (250)
+++++ +++|+|||||. +..++++|++
T Consensus 155 ~~~~~~~i~GvQfHPE~~~t~~G~~il~nFl~ 186 (187)
T PRK08007 155 IRHRQWDLEGVQFHPESILSEQGHQLLANFLH 186 (187)
T ss_pred EEeCCCCEEEEEeCCcccCCcchHHHHHHHhh
Confidence 99865 79999999994 6788998875
No 13
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5e-35 Score=229.41 Aligned_cols=172 Identities=24% Similarity=0.290 Sum_probs=139.8
Q ss_pred hCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 25 YGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 25 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
|++|+.++++.+++.|.++.+++-..-+... -+..++|+|||+.||+.+.+. ....++|+++ ..++||||||+|
T Consensus 10 yDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~-~~~~~pd~iviSPGPG~P~d~----G~~~~~i~~~-~~~~PiLGVCLG 83 (191)
T COG0512 10 YDSFTYNLVQYLRELGAEVTVVRNDDISLEL-IEALKPDAIVISPGPGTPKDA----GISLELIRRF-AGRIPILGVCLG 83 (191)
T ss_pred ccchHHHHHHHHHHcCCceEEEECCccCHHH-HhhcCCCEEEEcCCCCChHHc----chHHHHHHHh-cCCCCEEEECcc
Confidence 4468888999999999988888743111111 112458999999999998632 2356778887 667999999999
Q ss_pred HHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccc--cCCccEEEEEcCCC-ceE
Q 025645 105 HQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWK--VPIGAEVIGFSDKT-GVE 181 (250)
Q Consensus 105 ~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~--lp~~~~~la~s~~~-~v~ 181 (250)
||.|+.++||+|.+.+...|.....++.. .+.+|++ +|++|.+..|||..+.+ +|+.++++|.+++. .++
T Consensus 84 HQai~~~fGg~V~~a~~~~HGK~s~i~h~----g~~iF~g---lp~~f~v~RYHSLvv~~~~lP~~l~vtA~~~d~~~IM 156 (191)
T COG0512 84 HQAIAEAFGGKVVRAKEPMHGKTSIITHD----GSGLFAG---LPNPFTVTRYHSLVVDPETLPEELEVTAESEDGGVIM 156 (191)
T ss_pred HHHHHHHhCCEEEecCCCcCCeeeeeecC----CcccccC---CCCCCEEEeeEEEEecCCCCCCceEEEEEeCCCCEEE
Confidence 99999999999999987777666644333 4689999 89999999999999976 99999999999775 799
Q ss_pred EEEECC-cEEEEecCCC-----CCHHHHHHHHHH
Q 025645 182 MFTIGD-HILGIQGHPE-----YTKDILYNLIDR 209 (250)
Q Consensus 182 ~~~~~~-~~~g~QfHPE-----~~~~~~~~~~~~ 209 (250)
++++++ |++|+||||| .+.++++||++.
T Consensus 157 ai~h~~~pi~gvQFHPESilT~~G~~il~Nfl~~ 190 (191)
T COG0512 157 AVRHKKLPIYGVQFHPESILTEYGHRILENFLRL 190 (191)
T ss_pred EEeeCCCCEEEEecCCccccccchHHHHHHHHhh
Confidence 999976 8999999999 678999999864
No 14
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=100.00 E-value=1.6e-34 Score=233.02 Aligned_cols=171 Identities=21% Similarity=0.258 Sum_probs=136.9
Q ss_pred hCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 25 YGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 25 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
|++|+..+.++|++.|.++.++............ .++|||||+|||+++.+.. ...++++++ ..++||||||+|
T Consensus 8 ~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~d~iilsgGpg~p~~~~----~~~~~i~~~-~~~~PvLGIC~G 81 (188)
T TIGR00566 8 YDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA-LLPLLIVISPGPCTPNEAG----ISLEAIRHF-AGKLPILGVCLG 81 (188)
T ss_pred CcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh-cCCCEEEEcCCCCChhhcc----hhHHHHHHh-ccCCCEEEECHH
Confidence 4468888999999999998877643222111111 2589999999999986432 236677777 568999999999
Q ss_pred HHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccc--cccCCccEEEEEcCCC-ceE
Q 025645 105 HQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEV--WKVPIGAEVIGFSDKT-GVE 181 (250)
Q Consensus 105 ~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v--~~lp~~~~~la~s~~~-~v~ 181 (250)
||+|+.++||+|.+.+...+.++.+|++++ +.+|.+ +++.+.++++|++.| ..+|++++++|.++++ .++
T Consensus 82 ~Qll~~~~GG~v~~~~~~~~g~~~~v~~~~----~~~~~~---l~~~~~v~~~H~~~v~~~~l~~~~~v~a~s~~~~~v~ 154 (188)
T TIGR00566 82 HQAMGQAFGGDVVRANTVMHGKTSEIEHNG----AGIFRG---LFNPLTATRYHSLVVEPETLPTCFPVTAWEEENIEIM 154 (188)
T ss_pred HHHHHHHcCCEEeeCCCccccceEEEEECC----CccccC---CCCCcEEEEcccceEecccCCCceEEEEEcCCCCEEE
Confidence 999999999999998776677788888763 456777 677799999999998 4799999999999876 899
Q ss_pred EEEECC-cEEEEecCCCC-----CHHHHHHHHH
Q 025645 182 MFTIGD-HILGIQGHPEY-----TKDILYNLID 208 (250)
Q Consensus 182 ~~~~~~-~~~g~QfHPE~-----~~~~~~~~~~ 208 (250)
++++++ ++||+|||||. +..++++|+.
T Consensus 155 a~~~~~~~i~gvQfHPE~~~t~~G~~il~nfl~ 187 (188)
T TIGR00566 155 AIRHRDLPLEGVQFHPESILSEQGHQLLANFLH 187 (188)
T ss_pred EEEeCCCCEEEEEeCCCccCCcccHHHHHHHHh
Confidence 999877 79999999994 6889999874
No 15
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00 E-value=2.6e-34 Score=230.76 Aligned_cols=165 Identities=30% Similarity=0.482 Sum_probs=135.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCC-hhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 27 GYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGND-NWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 27 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~-~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
++...+.++|++.|.++.+++..... +..++.++||||+|||+.+.+++. +| +.+++.+.++|+||||+||
T Consensus 9 ~~~~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~~dgvIl~Gg~~~~~~~~~~~------~~~~~~~~~~PilGIC~G~ 80 (181)
T cd01742 9 QYTHLIARRVRELGVYSEILPNTTPL--EEIKLKNPKGIILSGGPSSVYEEDAPR------VDPEIFELGVPVLGICYGM 80 (181)
T ss_pred chHHHHHHHHHhcCceEEEecCCCCh--hhhcccCCCEEEECCCcccccccccch------hhHHHHhcCCCEEEEcHHH
Confidence 34566889999999988887754321 122577899999999999887652 32 2344556699999999999
Q ss_pred HHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccccCCccEEEEEcCCCceEEEEE
Q 025645 106 QVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVPIGAEVIGFSDKTGVEMFTI 185 (250)
Q Consensus 106 Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~lp~~~~~la~s~~~~v~~~~~ 185 (250)
|+|+.++||++.+.+. ++.|+.++.++. .+++|++ +|..+.++++|++.|..+|++++++|+++++.++++++
T Consensus 81 Qll~~~~gg~v~~~~~-~~~G~~~v~~~~---~~~l~~~---~~~~~~~~~~H~~~v~~l~~~~~~la~~~~~~i~a~~~ 153 (181)
T cd01742 81 QLIAKALGGKVERGDK-REYGKAEIEIDD---SSPLFEG---LPDEQTVWMSHGDEVVKLPEGFKVIASSDNCPVAAIAN 153 (181)
T ss_pred HHHHHhcCCeEEeCCC-CcceEEEEEecC---CChhhcC---CCCceEEEcchhhhhhhcCCCcEEEEeCCCCCEEEEEe
Confidence 9999999999998765 689999997653 5788988 78889999999999989999999999999999999999
Q ss_pred CC-cEEEEecCCCCC-----HHHHHHH
Q 025645 186 GD-HILGIQGHPEYT-----KDILYNL 206 (250)
Q Consensus 186 ~~-~~~g~QfHPE~~-----~~~~~~~ 206 (250)
++ ++||+|||||.+ ..++++|
T Consensus 154 ~~~~~~g~QfHPE~~~~~~g~~ll~~f 180 (181)
T cd01742 154 EEKKIYGVQFHPEVTHTEKGKEILKNF 180 (181)
T ss_pred CCCcEEEEEcCCccccCcChHHHHHhh
Confidence 75 899999999964 4566665
No 16
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=100.00 E-value=3.9e-34 Score=231.01 Aligned_cols=167 Identities=26% Similarity=0.471 Sum_probs=138.7
Q ss_pred CHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCC--cCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 27 GYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHK--YDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 27 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~--~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
.+..++.++|++.|.++.+++...+ .+++.+ +||||||||+.+.++... .++++.+.+.++|+||||+|
T Consensus 9 ~~~~~l~~~l~~~g~~~~~~~~~~~----~~~~~~~~~~glii~Gg~~~~~~~~~-----~~~i~~~~~~~~PilGIC~G 79 (188)
T TIGR00888 9 QYTQLIARRLRELGVYSELVPNTTP----LEEIREKNPKGIILSGGPSSVYAENA-----PRADEKIFELGVPVLGICYG 79 (188)
T ss_pred hHHHHHHHHHHHcCCEEEEEeCCCC----HHHHhhcCCCEEEECCCCCCcCcCCc-----hHHHHHHHhCCCCEEEECHH
Confidence 3567788999999999988765431 122333 569999999998876532 34677888889999999999
Q ss_pred HHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccccCCccEEEEEcCCCceEEEE
Q 025645 105 HQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVPIGAEVIGFSDKTGVEMFT 184 (250)
Q Consensus 105 ~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~lp~~~~~la~s~~~~v~~~~ 184 (250)
||+|+.++||+|.+.+. ++.|+.++++++ .+++|.+ +++.+.++++|++.+.++|++++++|+++++.+++++
T Consensus 80 ~Qll~~~lgg~v~~~~~-~~~g~~~v~~~~---~~~l~~~---~~~~~~~~~~H~~~v~~l~~~~~vla~~~~~~v~a~~ 152 (188)
T TIGR00888 80 MQLMAKQLGGEVGRAEK-REYGKAELEILD---EDDLFRG---LPDESTVWMSHGDKVKELPEGFKVLATSDNCPVAAMA 152 (188)
T ss_pred HHHHHHhcCceEecCCC-ccceeEEEEEec---CCHhhcC---CCCCcEEEeEccceeecCCCCCEEEEECCCCCeEEEE
Confidence 99999999999998765 688999999885 4578887 7888999999999998899999999999999999999
Q ss_pred ECC-cEEEEecCCCCC-----HHHHHHHHHH
Q 025645 185 IGD-HILGIQGHPEYT-----KDILYNLIDR 209 (250)
Q Consensus 185 ~~~-~~~g~QfHPE~~-----~~~~~~~~~~ 209 (250)
.++ ++||+|||||.+ ..++++|+..
T Consensus 153 ~~~~~~~g~QfHPE~~~~~~g~~i~~~f~~~ 183 (188)
T TIGR00888 153 HEEKPIYGVQFHPEVTHTEYGNELLENFVYD 183 (188)
T ss_pred ECCCCEEEEeeCCccCCChhhHHHHHHHHHH
Confidence 987 899999999964 5678888763
No 17
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=4.2e-34 Score=234.61 Aligned_cols=183 Identities=21% Similarity=0.277 Sum_probs=145.5
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-CCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-NDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
|||.|++.. + +++..+.++|++.|.++.+++......++. +.+.++|||||+|||+++.+. ....
T Consensus 1 ~~ilv~d~~-~---------~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~----~~~~ 66 (214)
T PRK07765 1 MRILVVDNY-D---------SFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERA----GASI 66 (214)
T ss_pred CeEEEEECC-C---------cHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhc----chHH
Confidence 467666533 2 356678899999999999887654222211 124579999999999876432 3356
Q ss_pred HHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc--
Q 025645 86 FMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW-- 163 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~-- 163 (250)
++++++.+.++||||||+|||+|+.++||+|.+.+.+.+.+.+.+.++. +.+|.+ +++.+.++++|++.|.
T Consensus 67 ~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~~~~g~~~~v~~~~----~~~~~~---~~~~~~v~~~H~~~v~~~ 139 (214)
T PRK07765 67 DMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPELLHGKTSSVHHTG----VGVLAG---LPDPFTATRYHSLTILPE 139 (214)
T ss_pred HHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCCCccCceeEEEECC----CccccC---CCCccEEEecchheEecc
Confidence 7889999999999999999999999999999998776665567777763 347777 7788999999999985
Q ss_pred ccCCccEEEEEcCCCceEEEEECC-cEEEEecCCCC-----CHHHHHHHHHHH
Q 025645 164 KVPIGAEVIGFSDKTGVEMFTIGD-HILGIQGHPEY-----TKDILYNLIDRL 210 (250)
Q Consensus 164 ~lp~~~~~la~s~~~~v~~~~~~~-~~~g~QfHPE~-----~~~~~~~~~~~~ 210 (250)
++|++++++|++++|.++++++++ ++||+|||||. +.+++++|+...
T Consensus 140 ~lp~~~~vla~s~~~~vqa~~~~~~~i~gvQfHPE~~~t~~g~~~l~~f~~~~ 192 (214)
T PRK07765 140 TLPAELEVTARTDSGVIMAVRHRELPIHGVQFHPESVLTEGGHRMLANWLTVC 192 (214)
T ss_pred cCCCceEEEEEcCCCcEEEEEeCCCCEEEEeeCCCcccCcchHHHHHHHHHHh
Confidence 799999999999999999999987 69999999994 457999998654
No 18
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=100.00 E-value=2.8e-34 Score=231.13 Aligned_cols=171 Identities=23% Similarity=0.292 Sum_probs=138.6
Q ss_pred hhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEeh
Q 025645 24 VYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICF 103 (250)
Q Consensus 24 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~ 103 (250)
.|++|+.++.++|++.|+++.+++...... ...++.++||||++||++++.++. ....++++...++|+||||+
T Consensus 6 ~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~~~dgvil~gG~~~~~~~~-----~~~~i~~~~~~~~PvlGIC~ 79 (184)
T cd01743 6 NYDSFTYNLVQYLRELGAEVVVVRNDEITL-EELELLNPDAIVISPGPGHPEDAG-----ISLEIIRALAGKVPILGVCL 79 (184)
T ss_pred CCCccHHHHHHHHHHcCCceEEEeCCCCCH-HHHhhcCCCEEEECCCCCCcccch-----hHHHHHHHHhcCCCEEEECH
Confidence 355788999999999999999888654321 111357899999999999876543 23334444566899999999
Q ss_pred HHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccccCCc--cEEEEEcCCCceE
Q 025645 104 GHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVPIG--AEVIGFSDKTGVE 181 (250)
Q Consensus 104 G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~lp~~--~~~la~s~~~~v~ 181 (250)
|||+|+.++||++.+.+..++.++..+.++ .+++|.+ +++.+.++++|++.|..+|.+ ++++|.+++|.++
T Consensus 80 G~Qlla~~~Gg~v~~~~~~~~g~~~~v~~~----~~~~~~~---~~~~~~~~~~H~~~v~~~~~~~~~~~la~~~~~~v~ 152 (184)
T cd01743 80 GHQAIAEAFGGKVVRAPEPMHGKTSEIHHD----GSGLFKG---LPQPFTVGRYHSLVVDPDPLPDLLEVTASTEDGVIM 152 (184)
T ss_pred hHHHHHHHhCCEEEeCCCCCcCceeEEEEC----CCccccC---CCCCcEEEeCcEEEEecCCCCceEEEEEeCCCCeEE
Confidence 999999999999999887666677787775 4578887 788899999999999888877 9999999999999
Q ss_pred EEEECC-cEEEEecCCCC-----CHHHHHHHH
Q 025645 182 MFTIGD-HILGIQGHPEY-----TKDILYNLI 207 (250)
Q Consensus 182 ~~~~~~-~~~g~QfHPE~-----~~~~~~~~~ 207 (250)
++++++ ++||+|||||. +.+++++|+
T Consensus 153 a~~~~~~~i~gvQfHPE~~~~~~g~~l~~~f~ 184 (184)
T cd01743 153 ALRHRDLPIYGVQFHPESILTEYGLRLLENFL 184 (184)
T ss_pred EEEeCCCCEEEEeeCCCcCCCcchHHHHHhhC
Confidence 999987 79999999994 567888773
No 19
>PRK05670 anthranilate synthase component II; Provisional
Probab=100.00 E-value=4.9e-34 Score=230.56 Aligned_cols=171 Identities=23% Similarity=0.328 Sum_probs=134.4
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 26 GGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 26 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
++|+..+.++|++.|.++.+++....+....+.+ ++||||++|||+++++.. ...++++.+ ..++|+||||+||
T Consensus 9 d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~-~~dglIlsgGpg~~~d~~----~~~~~l~~~-~~~~PvLGIClG~ 82 (189)
T PRK05670 9 DSFTYNLVQYLGELGAEVVVYRNDEITLEEIEAL-NPDAIVLSPGPGTPAEAG----ISLELIREF-AGKVPILGVCLGH 82 (189)
T ss_pred CchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhC-CCCEEEEcCCCCChHHcc----hHHHHHHHh-cCCCCEEEECHHH
Confidence 3578889999999999999887643221111223 489999999999986532 234566654 5689999999999
Q ss_pred HHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc--ccCCccEEEEEcCCCceEEE
Q 025645 106 QVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW--KVPIGAEVIGFSDKTGVEMF 183 (250)
Q Consensus 106 Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~--~lp~~~~~la~s~~~~v~~~ 183 (250)
|+|+.++||+|.+.+...+..+..++ . ..+++|++ +++.+.++++|++.|. ++|++++++|+++++.++++
T Consensus 83 Qlla~alGg~v~~~~~~~~g~~~~v~-~---~~~~l~~~---~~~~~~v~~~H~~~v~~~~lp~~~~~la~s~~~~i~a~ 155 (189)
T PRK05670 83 QAIGEAFGGKVVRAKEIMHGKTSPIE-H---DGSGIFAG---LPNPFTVTRYHSLVVDRESLPDCLEVTAWTDDGEIMGV 155 (189)
T ss_pred HHHHHHhCCEEEecCCcccCceeEEE-e---CCCchhcc---CCCCcEEEcchhheeccccCCCceEEEEEeCCCcEEEE
Confidence 99999999999988764444445555 2 24678887 7888999999999995 49999999999999999999
Q ss_pred EECC-cEEEEecCCCC-----CHHHHHHHHHH
Q 025645 184 TIGD-HILGIQGHPEY-----TKDILYNLIDR 209 (250)
Q Consensus 184 ~~~~-~~~g~QfHPE~-----~~~~~~~~~~~ 209 (250)
++++ ++||+|||||. +..++++|++.
T Consensus 156 ~~~~~~~~gvQfHPE~~~~~~g~~i~~~F~~~ 187 (189)
T PRK05670 156 RHKELPIYGVQFHPESILTEHGHKLLENFLEL 187 (189)
T ss_pred EECCCCEEEEeeCCCcCCCcchHHHHHHHHHh
Confidence 9864 79999999994 46789998875
No 20
>CHL00101 trpG anthranilate synthase component 2
Probab=100.00 E-value=4e-34 Score=231.11 Aligned_cols=171 Identities=20% Similarity=0.240 Sum_probs=134.2
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 26 GGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 26 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
++|+..+++.|++.|.++.+++....+..+ ....++|||||+|||+++++.. ...++++ +.+.++|+||||+||
T Consensus 9 dsft~~l~~~l~~~g~~~~v~~~~~~~~~~-~~~~~~dgiiisgGpg~~~~~~----~~~~i~~-~~~~~~PiLGIClG~ 82 (190)
T CHL00101 9 DSFTYNLVQSLGELNSDVLVCRNDEIDLSK-IKNLNIRHIIISPGPGHPRDSG----ISLDVIS-SYAPYIPILGVCLGH 82 (190)
T ss_pred CchHHHHHHHHHhcCCCEEEEECCCCCHHH-HhhCCCCEEEECCCCCChHHCc----chHHHHH-HhcCCCcEEEEchhH
Confidence 357888999999999998877643222111 1124689999999999886532 1233443 456799999999999
Q ss_pred HHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc--ccCCccEEEEEcCCCceEEE
Q 025645 106 QVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW--KVPIGAEVIGFSDKTGVEMF 183 (250)
Q Consensus 106 Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~--~lp~~~~~la~s~~~~v~~~ 183 (250)
|+|+.++||+|.+.+.+++.++..+.. ..+++|.+ +|..+.++++|++.|. ++|++++++|+++++.++++
T Consensus 83 Qlla~~~Gg~V~~~~~~~~g~~~~~~~----~~~~l~~~---~~~~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~v~a~ 155 (190)
T CHL00101 83 QSIGYLFGGKIIKAPKPMHGKTSKIYH----NHDDLFQG---LPNPFTATRYHSLIIDPLNLPSPLEITAWTEDGLIMAC 155 (190)
T ss_pred HHHHHHhCCEEEECCCcccCceeeEee----CCcHhhcc---CCCceEEEcchhheeecccCCCceEEEEEcCCCcEEEE
Confidence 999999999999988766666655543 24578888 7888999999999994 68999999999999999999
Q ss_pred EECC-c-EEEEecCCCC-----CHHHHHHHHHH
Q 025645 184 TIGD-H-ILGIQGHPEY-----TKDILYNLIDR 209 (250)
Q Consensus 184 ~~~~-~-~~g~QfHPE~-----~~~~~~~~~~~ 209 (250)
++++ + +||+|||||. +.+++++|++.
T Consensus 156 ~~~~~~~i~gvQfHPE~~~~~~g~~l~~nf~~~ 188 (190)
T CHL00101 156 RHKKYKMLRGIQFHPESLLTTHGQQILRNFLSL 188 (190)
T ss_pred EeCCCCCEEEEEeCCccCCChhHHHHHHHHHhh
Confidence 9876 5 9999999994 46788888763
No 21
>PRK00758 GMP synthase subunit A; Validated
Probab=100.00 E-value=2.6e-33 Score=225.48 Aligned_cols=165 Identities=27% Similarity=0.470 Sum_probs=132.6
Q ss_pred CHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCc-CEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 27 GYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKY-DGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 27 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~-dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
+|..++.++|++.|.++.+++... +++++.++ ||||||||+. .+|...+.++++ +.++||||||+||
T Consensus 10 ~~~~~i~~~l~~~g~~~~~~~~~~----~~~~l~~~~dgivi~Gg~~-----~~~~~~~~~~l~---~~~~PilGIC~G~ 77 (184)
T PRK00758 10 QYNHLIHRTLRYLGVDAKIIPNTT----PVEEIKAFEDGLILSGGPD-----IERAGNCPEYLK---ELDVPILGICLGH 77 (184)
T ss_pred chHHHHHHHHHHcCCcEEEEECCC----CHHHHhhcCCEEEECCCCC-----hhhccccHHHHH---hCCCCEEEEeHHH
Confidence 466778899999999887776332 12346677 9999999982 123333333443 5689999999999
Q ss_pred HHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccccCCccEEEEEcCCCceEEEEE
Q 025645 106 QVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVPIGAEVIGFSDKTGVEMFTI 185 (250)
Q Consensus 106 Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~lp~~~~~la~s~~~~v~~~~~ 185 (250)
|+|+.++||+|.+.+. .+.|+.++.+++ .+++|.+ +|+.+.++++|++.|.++|++++++|++++|.++++++
T Consensus 78 Q~L~~a~Gg~v~~~~~-~~~g~~~i~~~~---~~~l~~~---~~~~~~~~~~H~~~v~~l~~~~~~la~~~~~~v~a~~~ 150 (184)
T PRK00758 78 QLIAKAFGGEVGRGEY-GEYALVEVEILD---EDDILKG---LPPEIRVWASHADEVKELPDGFEILARSDICEVEAMKH 150 (184)
T ss_pred HHHHHhcCcEEecCCC-ceeeeEEEEEcC---CChhhhC---CCCCcEEEeehhhhhhhCCCCCEEEEECCCCCEEEEEE
Confidence 9999999999998765 588999998874 4567887 78899999999999989999999999999999999998
Q ss_pred CC-cEEEEecCCCCC-----HHHHHHHHHHH
Q 025645 186 GD-HILGIQGHPEYT-----KDILYNLIDRL 210 (250)
Q Consensus 186 ~~-~~~g~QfHPE~~-----~~~~~~~~~~~ 210 (250)
++ ++||+|||||+. ..++++|++..
T Consensus 151 ~~~~~~g~QfHPE~~~~~~g~~l~~~f~~~~ 181 (184)
T PRK00758 151 KEKPIYGVQFHPEVAHTEYGEEIFKNFLEIC 181 (184)
T ss_pred CCCCEEEEEcCCccCCCchHHHHHHHHHHHH
Confidence 65 599999999953 57888888643
No 22
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=1.8e-33 Score=227.65 Aligned_cols=171 Identities=21% Similarity=0.249 Sum_probs=132.8
Q ss_pred hCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 25 YGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 25 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
|++|+.++++.|++.|.++.+++....+..... ..++|+|||+|||++++++..+ ..+++. .+.++|+||||+|
T Consensus 8 ~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~iilsgGP~~~~~~~~~----~~~i~~-~~~~~PiLGIC~G 81 (191)
T PRK06774 8 YDSFTYNLYQYFCELGTEVMVKRNDELQLTDIE-QLAPSHLVISPGPCTPNEAGIS----LAVIRH-FADKLPILGVCLG 81 (191)
T ss_pred CCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-hcCCCeEEEcCCCCChHhCCCc----hHHHHH-hcCCCCEEEECHH
Confidence 346889999999999999988874322211111 1258999999999999765432 344554 3568999999999
Q ss_pred HHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccc--cccCCccEEEEEcCCC----
Q 025645 105 HQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEV--WKVPIGAEVIGFSDKT---- 178 (250)
Q Consensus 105 ~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v--~~lp~~~~~la~s~~~---- 178 (250)
||+|+.++||+|.+.+. .+.|+..+.... .+++|++ ++..+.++++|++.| .++|++++++|+++.+
T Consensus 82 ~Qlla~~~GG~v~~~~~-~~~G~~~~~~~~---~~~lf~~---l~~~~~v~~~Hs~~v~~~~lp~~~~vlA~s~~d~~~~ 154 (191)
T PRK06774 82 HQALGQAFGARVVRARQ-VMHGKTSAICHS---GQGVFRG---LNQPLTVTRYHSLVIAADSLPGCFELTAWSERGGEMD 154 (191)
T ss_pred HHHHHHHhCCEEEeCCc-ceecceEEEEec---CchhhcC---CCCCcEEEEeCcceeeccCCCCCeEEEEEeCCCCCcc
Confidence 99999999999999876 567887776653 4678887 788899999999998 4789999999998754
Q ss_pred ceEEEEECC-cEEEEecCCCC-----CHHHHHHHHH
Q 025645 179 GVEMFTIGD-HILGIQGHPEY-----TKDILYNLID 208 (250)
Q Consensus 179 ~v~~~~~~~-~~~g~QfHPE~-----~~~~~~~~~~ 208 (250)
.++++++++ ++||+|||||. +..++++|++
T Consensus 155 ~i~~~~~~~~~i~GvQfHPE~~~~~~G~~i~~nf~~ 190 (191)
T PRK06774 155 EIMGIRHRTLPLEGVQFHPESILSEQGHQLLDNFLK 190 (191)
T ss_pred eEEEEEeCCCCEEEEEECCCcCCCccHHHHHHHHhh
Confidence 356677764 89999999994 5678888874
No 23
>PLN02347 GMP synthetase
Probab=100.00 E-value=6.4e-33 Score=253.42 Aligned_cols=200 Identities=21% Similarity=0.272 Sum_probs=159.2
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCC--CcCEEEEcCCCCCCCCCC-hhHHHH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLH--KYDGFVISGSPYDAYGND-NWILKL 84 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~--~~dglIi~Gg~~~~~~~~-~~~~~~ 84 (250)
+|+||+.+. +|+.++++.+++.|..++++.... +.+++. ++|||||||||.++++.. +|...
T Consensus 12 ~IlIID~G~----------~~t~~I~r~lrelgv~~~v~p~~~----~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~- 76 (536)
T PLN02347 12 VVLILDYGS----------QYTHLITRRVRELGVYSLLLSGTA----SLDRIASLNPRVVILSGGPHSVHVEGAPTVPE- 76 (536)
T ss_pred EEEEEECCC----------cHHHHHHHHHHHCCCeEEEEECCC----CHHHHhcCCCCEEEECCCCCcccccCCchhhH-
Confidence 688887654 467788999999999887775331 122232 689999999999988653 55433
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCc--eEEEeeecccc
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGS--LSIMECHRDEV 162 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~--~~~~~~H~~~v 162 (250)
.+++.+.+.++||||||+|||+|+.++||+|.+.+. ++.|+.++++.. .+++|++ +++. +.++++|++.|
T Consensus 77 -~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~~-~e~G~~~v~i~~---~~~Lf~~---l~~~~~~~v~~~Hsd~V 148 (536)
T PLN02347 77 -GFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGEK-QEYGRMEIRVVC---GSQLFGD---LPSGETQTVWMSHGDEA 148 (536)
T ss_pred -HHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecCC-cccceEEEEEcC---CChhhhc---CCCCceEEEEEEEEEEe
Confidence 355556667999999999999999999999998754 689999998853 5679988 7765 88999999999
Q ss_pred cccCCccEEEEEcCCCceEEEEEC-CcEEEEecCCCC-----CHHHHHHHHHHHh--cCCCccHHHHHHHHhhccc
Q 025645 163 WKVPIGAEVIGFSDKTGVEMFTIG-DHILGIQGHPEY-----TKDILYNLIDRLL--NNNSIEREFAENAKFGLEI 230 (250)
Q Consensus 163 ~~lp~~~~~la~s~~~~v~~~~~~-~~~~g~QfHPE~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 230 (250)
..+|++++++|++++|.+++++++ .++||+|||||. +.++++||+..++ +..|.++.++++..+++.+
T Consensus 149 ~~lP~g~~vlA~s~~~~iaai~~~~~~i~GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~~~~~~~~~~~~i~~i~~ 224 (536)
T PLN02347 149 VKLPEGFEVVAKSVQGAVVAIENRERRIYGLQYHPEVTHSPKGMETLRHFLFDVCGVTADWKMQDVLEEQIELIKA 224 (536)
T ss_pred eeCCCCCEEEEEeCCCcEEEEEECCCCEEEEEccCCCCccchHHHHHHHHHHHHhCcCCCcCcchHHHHHHHHHHH
Confidence 899999999999999999999885 489999999995 4678999987664 4678888777666555544
No 24
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=3.4e-33 Score=226.25 Aligned_cols=171 Identities=23% Similarity=0.306 Sum_probs=133.5
Q ss_pred hCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 25 YGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 25 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
|++|+..+.++|++.|..+.+++....+.+...+ .++|++|++|||++++++..+ .++++. .+.++|+||||+|
T Consensus 8 ~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-~~~~~iilsgGp~~~~~~~~~----~~~i~~-~~~~~PiLGIClG 81 (193)
T PRK08857 8 YDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEA-LNPTHLVISPGPCTPNEAGIS----LQAIEH-FAGKLPILGVCLG 81 (193)
T ss_pred CCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhh-CCCCEEEEeCCCCChHHCcch----HHHHHH-hcCCCCEEEEcHH
Confidence 3468888999999999999988765333221112 258999999999998765443 345555 4679999999999
Q ss_pred HHHHHHHcCceEEecCCCceeeE-EEEEEecCCCCCCcccccCCCCCceEEEeeeccccc--ccCCccEEEEEcC--C--
Q 025645 105 HQVLCRALGGKVGKAYTGWDIGL-RRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW--KVPIGAEVIGFSD--K-- 177 (250)
Q Consensus 105 ~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~--~lp~~~~~la~s~--~-- 177 (250)
||+|+.++||+|.+.+.+ +.|+ ..+..+ .+++|.+ ++..+.++++|++.|. ++|++++++|+++ +
T Consensus 82 ~Qlia~a~Gg~v~~~~~~-~~G~~~~~~~~----~~~l~~~---~~~~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~~ 153 (193)
T PRK08857 82 HQAIAQVFGGQVVRARQV-MHGKTSPIRHT----GRSVFKG---LNNPLTVTRYHSLVVKNDTLPECFELTAWTELEDGS 153 (193)
T ss_pred HHHHHHHhCCEEEeCCCc-eeCceEEEEEC----CCccccc---CCCccEEEEccEEEEEcCCCCCCeEEEEEecCcCCC
Confidence 999999999999998764 3454 455543 4568887 7888999999999985 7999999999886 3
Q ss_pred -CceEEEEECC-cEEEEecCCC-----CCHHHHHHHHHH
Q 025645 178 -TGVEMFTIGD-HILGIQGHPE-----YTKDILYNLIDR 209 (250)
Q Consensus 178 -~~v~~~~~~~-~~~g~QfHPE-----~~~~~~~~~~~~ 209 (250)
+.++++++++ ++||+||||| .+..++++|++.
T Consensus 154 ~~~i~~~~~~~~pi~gvQfHPE~~~t~~g~~i~~nFl~~ 192 (193)
T PRK08857 154 MDEIMGFQHKTLPIEAVQFHPESIKTEQGHQLLANFLAR 192 (193)
T ss_pred cceEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHHHHhh
Confidence 3488888876 7999999999 367889999764
No 25
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=100.00 E-value=3.7e-34 Score=231.92 Aligned_cols=174 Identities=30% Similarity=0.440 Sum_probs=140.5
Q ss_pred hCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 25 YGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 25 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
|++|+.++.+++++.|.+++++++........+++.++|||||+||++++++ +..+.++++++.+.++|+||||+|
T Consensus 6 ~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d----~~~~~~~i~~~~~~~~PilGIC~G 81 (192)
T PF00117_consen 6 GDSFTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD----IEGLIELIREARERKIPILGICLG 81 (192)
T ss_dssp SHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS----HHHHHHHHHHHHHTTSEEEEETHH
T ss_pred CHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc----ccccccccccccccceEEEEEeeh
Confidence 4567889999999999999998865421110013788999999999999977 678889999999999999999999
Q ss_pred HHHHHHHcCceEEecCCCceee-EEEEEEecCCCCCCcccccCCCCCceEEEeeecccccc---cCCccEEEEEcCC-Cc
Q 025645 105 HQVLCRALGGKVGKAYTGWDIG-LRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWK---VPIGAEVIGFSDK-TG 179 (250)
Q Consensus 105 ~Qlla~a~gg~v~~~~~~~~~g-~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~---lp~~~~~la~s~~-~~ 179 (250)
||+|+.++||+|.+.+...+.| ...+..++ .+++|.+ +|+.+.++++|++.|.. +|++++++|.+++ |.
T Consensus 82 ~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~---~~~~~~~---~~~~~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~ 155 (192)
T PF00117_consen 82 HQILAHALGGKVVPSPEKPHHGGNIPISETP---EDPLFYG---LPESFKAYQYHSDAVNPDDLLPEGFEVLASSSDGCP 155 (192)
T ss_dssp HHHHHHHTTHEEEEEESEEEEEEEEEEEEEE---EHGGGTT---STSEEEEEEEECEEEEEGHHHHTTEEEEEEETTTTE
T ss_pred hhhhHHhcCCccccccccccccccccccccc---ccccccc---cccccccccccceeeecccccccccccccccccccc
Confidence 9999999999999887334444 44555542 2577887 78999999999999988 9999999999965 47
Q ss_pred eEEEEECC-cEEEEecCCCCC-----HHHHHHHHH
Q 025645 180 VEMFTIGD-HILGIQGHPEYT-----KDILYNLID 208 (250)
Q Consensus 180 v~~~~~~~-~~~g~QfHPE~~-----~~~~~~~~~ 208 (250)
++++.+.+ ++||+|||||++ ..++++|+-
T Consensus 156 ~~~~~~~~~~i~g~QfHPE~~~~~~~~~~l~nf~~ 190 (192)
T PF00117_consen 156 IQAIRHKDNPIYGVQFHPEFSSSPGGPQLLKNFFL 190 (192)
T ss_dssp EEEEEECTTSEEEESSBTTSTTSTTHHHHHHHHHH
T ss_pred cccccccccEEEEEecCCcCCCCCCcchhhhheeE
Confidence 88888876 599999999965 456777753
No 26
>PRK05637 anthranilate synthase component II; Provisional
Probab=100.00 E-value=1.6e-32 Score=224.01 Aligned_cols=181 Identities=21% Similarity=0.274 Sum_probs=137.2
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCC--CCcCEEEEcCCCCCCCCCChhHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDL--HKYDGFVISGSPYDAYGNDNWILKL 84 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l--~~~dglIi~Gg~~~~~~~~~~~~~~ 84 (250)
.||+|++.. ++|+.++.+.|++.|..+++++... + .+++ .++|+|||+|||+++++.. ..
T Consensus 2 ~~il~iD~~----------dsf~~nl~~~l~~~g~~~~v~~~~~---~-~~~l~~~~~~~iIlsgGPg~~~d~~----~~ 63 (208)
T PRK05637 2 THVVLIDNH----------DSFVYNLVDAFAVAGYKCTVFRNTV---P-VEEILAANPDLICLSPGPGHPRDAG----NM 63 (208)
T ss_pred CEEEEEECC----------cCHHHHHHHHHHHCCCcEEEEeCCC---C-HHHHHhcCCCEEEEeCCCCCHHHhh----HH
Confidence 367777543 3577889999999999998886431 1 1122 3689999999999986542 23
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCC------------Cce
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIP------------GSL 152 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~------------~~~ 152 (250)
.++++.+. .++||||||+|||+|+.++||+|.+... .+..+..+.+++.+..+++|++ +| ..+
T Consensus 64 ~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~~~-~~G~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~~~g~~~ 138 (208)
T PRK05637 64 MALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPCGP-VHGTTDNMILTDAGVQSPVFAG---LATDVEPDHPEIPGRKV 138 (208)
T ss_pred HHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccCCc-ccceEEEeEECCCCCCCcccCC---CCcccccccccccCCce
Confidence 45665544 4799999999999999999999986542 3344566777765556788887 44 358
Q ss_pred EEEeeecccccccCCccEEEEEcCC--Cce-EEEEEC-CcEEEEecCCC-----CCHHHHHHHHHHH
Q 025645 153 SIMECHRDEVWKVPIGAEVIGFSDK--TGV-EMFTIG-DHILGIQGHPE-----YTKDILYNLIDRL 210 (250)
Q Consensus 153 ~~~~~H~~~v~~lp~~~~~la~s~~--~~v-~~~~~~-~~~~g~QfHPE-----~~~~~~~~~~~~~ 210 (250)
.++++|++.|..+|++++++|++++ |.+ ++++.. .++||+||||| .+..+++||+..+
T Consensus 139 ~V~~~H~~~v~~lp~~~~vlA~s~~~~~~v~~a~~~~~~~~~GvQfHPE~~~T~~G~~il~nfl~~~ 205 (208)
T PRK05637 139 PIARYHSLGCVVAPDGMESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESVLSPTGPIILSRCVEQL 205 (208)
T ss_pred EEEEechhhhhcCCCCeEEEEEecCCCCCEEEEEEECCCCEEEEEeCCccCcCCCHHHHHHHHHHHH
Confidence 8999999999999999999999764 554 455554 47999999999 5688999999876
No 27
>PRK00074 guaA GMP synthase; Reviewed
Probab=100.00 E-value=1.9e-32 Score=250.69 Aligned_cols=198 Identities=22% Similarity=0.356 Sum_probs=161.0
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCC--CcCEEEEcCCCCCCCCCC-hhHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLH--KYDGFVISGSPYDAYGND-NWILK 83 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~--~~dglIi~Gg~~~~~~~~-~~~~~ 83 (250)
.+|+||+.+. +|+..+.+.+++.|...+++..... .++++ ++||||||||+.++++.. ++.
T Consensus 4 ~~i~vlD~Gs----------q~~~li~r~lrelg~~~~v~p~~~~----~~~l~~~~~dgIIlsGGp~sv~~~~~p~~-- 67 (511)
T PRK00074 4 DKILILDFGS----------QYTQLIARRVRELGVYSEIVPYDIS----AEEIRAFNPKGIILSGGPASVYEEGAPRA-- 67 (511)
T ss_pred CEEEEEECCC----------CcHHHHHHHHHHCCCeEEEEECCCC----HHHHhccCCCEEEECCCCcccccCCCccc--
Confidence 4699998754 4677889999999998887753321 12333 459999999999988754 332
Q ss_pred HHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc
Q 025645 84 LCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW 163 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~ 163 (250)
.+.+.+.++||||||+|||+|+.++||+|.+... ++.|+..+++++ .+++|++ +++.+.++++|+|.|.
T Consensus 68 ----~~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~~~-~e~G~~~i~i~~---~~~Lf~~---l~~~~~v~~~H~d~V~ 136 (511)
T PRK00074 68 ----DPEIFELGVPVLGICYGMQLMAHQLGGKVERAGK-REYGRAELEVDN---DSPLFKG---LPEEQDVWMSHGDKVT 136 (511)
T ss_pred ----cHHHHhCCCCEEEECHHHHHHHHHhCCeEEecCC-cccceEEEEEcC---CChhhhc---CCCceEEEEECCeEEE
Confidence 2345567999999999999999999999998764 689999999874 4678988 7888999999999999
Q ss_pred ccCCccEEEEEcCCCceEEEEEC-CcEEEEecCCCCC-----HHHHHHHHHHHh--cCCCccHHHHHHHHhhcccc
Q 025645 164 KVPIGAEVIGFSDKTGVEMFTIG-DHILGIQGHPEYT-----KDILYNLIDRLL--NNNSIEREFAENAKFGLEIA 231 (250)
Q Consensus 164 ~lp~~~~~la~s~~~~v~~~~~~-~~~~g~QfHPE~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 231 (250)
++|++++++|+++++.++++++. +++||+|||||.+ ..++++|+..++ +..|.++.++++..+.+++.
T Consensus 137 ~lp~g~~vlA~s~~~~v~ai~~~~~~i~GvQFHPE~~~t~~G~~il~nFl~~i~~~~~~~~~~~~~~~~~~~l~~~ 212 (511)
T PRK00074 137 ELPEGFKVIASTENCPIAAIANEERKFYGVQFHPEVTHTPQGKKLLENFVFDICGCKGDWTMENFIEEAIEEIREQ 212 (511)
T ss_pred ecCCCcEEEEEeCCCCEEEEEeCCCCEEEEeCCCCcCCchhHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHh
Confidence 99999999999999999999974 5899999999954 569999997664 57888998888887777653
No 28
>PLN02335 anthranilate synthase
Probab=100.00 E-value=5.2e-32 Score=223.29 Aligned_cols=185 Identities=19% Similarity=0.252 Sum_probs=142.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
.++|+||+. |++|+.+++++|++.|+++.+++....+.... ...++|+|||+|||+++++.... .
T Consensus 18 ~~~ilviD~----------~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~-~~~~~d~iVisgGPg~p~d~~~~----~ 82 (222)
T PLN02335 18 NGPIIVIDN----------YDSFTYNLCQYMGELGCHFEVYRNDELTVEEL-KRKNPRGVLISPGPGTPQDSGIS----L 82 (222)
T ss_pred cCcEEEEEC----------CCCHHHHHHHHHHHCCCcEEEEECCCCCHHHH-HhcCCCEEEEcCCCCChhhccch----H
Confidence 346777742 33588899999999999999887432221111 12368999999999999765421 2
Q ss_pred HHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCc-eeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc-
Q 025645 86 FMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGW-DIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW- 163 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~-~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~- 163 (250)
+.++. ...++|+||||+|||+|+.++||++.+.+.++ +.++.++..+.. ..+++|++ +|..+.++++|+++|.
T Consensus 83 ~~~~~-~~~~~PiLGIClG~QlLa~alGg~v~~~~~~~~~G~~~~v~~~~~-~~~~Lf~~---l~~~~~v~~~H~~~v~~ 157 (222)
T PLN02335 83 QTVLE-LGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEK-GEEGLFSG---LPNPFTAGRYHSLVIEK 157 (222)
T ss_pred HHHHH-hCCCCCEEEecHHHHHHHHHhCCEEEeCCCccccCceeeeEECCC-CCChhhhC---CCCCCEEEechhheEec
Confidence 33333 34579999999999999999999999887653 456777877643 34689998 8888999999999984
Q ss_pred -ccCCc-cEEEEEcCCCceEEEEECC-c-EEEEecCCC-----CCHHHHHHHHHHH
Q 025645 164 -KVPIG-AEVIGFSDKTGVEMFTIGD-H-ILGIQGHPE-----YTKDILYNLIDRL 210 (250)
Q Consensus 164 -~lp~~-~~~la~s~~~~v~~~~~~~-~-~~g~QfHPE-----~~~~~~~~~~~~~ 210 (250)
.+|.+ ++++|+++++.++++++++ + +||+||||| .+..++++|++..
T Consensus 158 ~~lp~~~~~v~a~~~~~~v~ai~~~~~~~i~GvQfHPE~~~~~~g~~i~~nF~~~~ 213 (222)
T PLN02335 158 DTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKII 213 (222)
T ss_pred ccCCCCceEEEEEcCCCCEEEEEecCCCCEEEEEeCCCCCCChhHHHHHHHHHHHH
Confidence 57877 9999999999999999875 4 999999999 3467899998754
No 29
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.98 E-value=1.7e-31 Score=217.62 Aligned_cols=187 Identities=18% Similarity=0.177 Sum_probs=145.8
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
|||+||+...... ++..++.++++..|.+++++.+.. +.++.++|+||||||+.+.+++..|...+.+
T Consensus 1 ~~i~vl~~~~~~~-------e~~~~~~~~l~~~g~~~~~~~~~~-----~~~l~~~d~iii~GG~~~~~~~~~~~~~~~~ 68 (200)
T PRK13527 1 MKIGVLALQGDVE-------EHIDALKRALDELGIDGEVVEVRR-----PGDLPDCDALIIPGGESTTIGRLMKREGILD 68 (200)
T ss_pred CEEEEEEECCccH-------HHHHHHHHHHHhcCCCeEEEEeCC-----hHHhccCCEEEECCCcHHHHHHHHhhccHHH
Confidence 4799988666544 356778899999999888777542 2356789999999998876655556666788
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecC--CC------CCCcccccCCCCCceEEEeee
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVND--LA------PCSFLEDLGEIPGSLSIMECH 158 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~--~~------~~~l~~~~~~l~~~~~~~~~H 158 (250)
+|+.+.+.++|+||||+|+|+|+.++||........+..|+.+++++.. +. .+.+|.+ +|+.+.++++|
T Consensus 69 ~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~H 145 (200)
T PRK13527 69 EIKEKIEEGLPILGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFGRQRDSFEAEIDLSG---LDGPFHAVFIR 145 (200)
T ss_pred HHHHHHHCCCeEEEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeeccccCccccEEEeEeccc---cCCcceEEEEc
Confidence 9999988999999999999999999998543333446788888776532 11 1234555 78889999999
Q ss_pred cccccccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCC--HHHHHHHHHHH
Q 025645 159 RDEVWKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYT--KDILYNLIDRL 210 (250)
Q Consensus 159 ~~~v~~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~--~~~~~~~~~~~ 210 (250)
++.|..+|++++++|+++++.+ +++. +++||+|||||++ ..++++|++..
T Consensus 146 ~~~v~~lp~~~~~la~~~~~~~-a~~~-~~~~g~QfHPE~~~~~~l~~~f~~~~ 197 (200)
T PRK13527 146 APAITKVGGDVEVLAKLDDRIV-AVEQ-GNVLATAFHPELTDDTRIHEYFLKKV 197 (200)
T ss_pred cccccccCCCeEEEEEECCEEE-EEEE-CCEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999998865 6664 4799999999975 56788888765
No 30
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=1.8e-31 Score=218.42 Aligned_cols=181 Identities=19% Similarity=0.188 Sum_probs=135.2
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCC--CChhHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYG--NDNWILKL 84 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~--~~~~~~~~ 84 (250)
|||+|++.+... ...+.++|++.|.++.+..+. ++++++++|+|||||+.....+ ...|....
T Consensus 2 ~~~~iid~g~gn----------~~s~~~al~~~g~~~~v~~~~-----~~~~l~~~d~lIlpG~~~~~~~~~~l~~~~~~ 66 (209)
T PRK13146 2 MTVAIIDYGSGN----------LRSAAKALERAGAGADVVVTA-----DPDAVAAADRVVLPGVGAFADCMRGLRAVGLG 66 (209)
T ss_pred CeEEEEECCCCh----------HHHHHHHHHHcCCCccEEEEC-----CHHHhcCCCEEEECCCCcHHHHHHHHHHCCcH
Confidence 689999877654 245678999999854333321 3456889999999997543211 11222123
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHH------------cCceEEec-C-----CCceeeEEEEEEecCCCCCCcccccC
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRA------------LGGKVGKA-Y-----TGWDIGLRRVRIVNDLAPCSFLEDLG 146 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a------------~gg~v~~~-~-----~~~~~g~~~i~~~~~~~~~~l~~~~~ 146 (250)
..+++.+.+.++|+||||+|||+|+.+ ++|++.+. + ..+++||++|++.+ .+++|++
T Consensus 67 ~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~~v~~~~---~~~lf~~-- 141 (209)
T PRK13146 67 EAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWNTVDQTR---DHPLFAG-- 141 (209)
T ss_pred HHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChHHeeeCC---CChhccC--
Confidence 345566667899999999999999999 89999886 2 33679999998864 5789998
Q ss_pred CCCCceEEEeeecccccccCCccEEEEEcCCC-ceEEEEECCcEEEEecCCCCC----HHHHHHHHHH
Q 025645 147 EIPGSLSIMECHRDEVWKVPIGAEVIGFSDKT-GVEMFTIGDHILGIQGHPEYT----KDILYNLIDR 209 (250)
Q Consensus 147 ~l~~~~~~~~~H~~~v~~lp~~~~~la~s~~~-~v~~~~~~~~~~g~QfHPE~~----~~~~~~~~~~ 209 (250)
+|+.+.++++|++.+...| +..++|+++.+ .+++++.++++||+|||||.+ ..++++|++.
T Consensus 142 -~~~~~~v~~~Hs~~v~~~~-~~~~la~s~~~~~~~a~~~~~~i~GvQFHPE~s~~~G~~ll~nfl~~ 207 (209)
T PRK13146 142 -IPDGARFYFVHSYYAQPAN-PADVVAWTDYGGPFTAAVARDNLFATQFHPEKSQDAGLALLRNFLAW 207 (209)
T ss_pred -CCCCCEEEEEeEEEEEcCC-CCcEEEEEcCCCEEEEEEecCCEEEEEcCCcccHHHHHHHHHHHHhh
Confidence 8888999999999986555 67889988875 478888888999999999965 5677777654
No 31
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.97 E-value=9.7e-31 Score=210.93 Aligned_cols=173 Identities=18% Similarity=0.217 Sum_probs=132.7
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
|+|+|++...+. .. ..++|+..|.++..+. .+++++++||||+|||+.+.++...|...+.+
T Consensus 2 m~~~i~~~~g~~----------~~-~~~~l~~~g~~~~~~~-------~~~~l~~~dgiii~GG~~~~~~~~~~~~~~~~ 63 (189)
T PRK13525 2 MKIGVLALQGAV----------RE-HLAALEALGAEAVEVR-------RPEDLDEIDGLILPGGESTTMGKLLRDFGLLE 63 (189)
T ss_pred CEEEEEEcccCH----------HH-HHHHHHHCCCEEEEeC-------ChhHhccCCEEEECCCChHHHHHHHHhccHHH
Confidence 588888765432 22 2466888898877764 23457889999999998776555555566778
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHHcCc-----------eEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEE
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRALGG-----------KVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIM 155 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a~gg-----------~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~ 155 (250)
+++.+.+.++|+||||+|+|+|+.++|| ++.+++.+++.|.... +.++.+ +++.+.++
T Consensus 64 ~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~~~--------~~~~~~---~~~~~~~~ 132 (189)
T PRK13525 64 PLREFIASGLPVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSFEA--------ELDIKG---LGEPFPAV 132 (189)
T ss_pred HHHHHHHCCCeEEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceeeEEe--------cccccC---CCCCeEEE
Confidence 8999999999999999999999999998 5655555555554433 234555 56689999
Q ss_pred eeecccccccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCC--HHHHHHHHHHH
Q 025645 156 ECHRDEVWKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYT--KDILYNLIDRL 210 (250)
Q Consensus 156 ~~H~~~v~~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~--~~~~~~~~~~~ 210 (250)
++|+|.|..+|+++++||+++.+ +++++.+ ++||+|||||++ ..++++|++..
T Consensus 133 ~~H~d~v~~lp~~~~vlA~~~~~-~~~~~~~-~~~g~QfHPE~~~~~~~~~~f~~~~ 187 (189)
T PRK13525 133 FIRAPYIEEVGPGVEVLATVGGR-IVAVRQG-NILATSFHPELTDDTRVHRYFLEMV 187 (189)
T ss_pred EEeCceeeccCCCcEEEEEcCCE-EEEEEeC-CEEEEEeCCccCCCchHHHHHHHHh
Confidence 99999999999999999999765 4577754 899999999975 56888887654
No 32
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.97 E-value=5.5e-30 Score=217.65 Aligned_cols=197 Identities=20% Similarity=0.275 Sum_probs=155.9
Q ss_pred ccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC--------------CCC--CCCcCEEE
Q 025645 3 LMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD--------------FND--LHKYDGFV 66 (250)
Q Consensus 3 ~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~--------------~~~--l~~~dglI 66 (250)
+.+++||+||+.+++... ....|.++|.....++++........+. .++ -.++||+|
T Consensus 32 dirpl~i~ilNlMp~k~~-------TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~I 104 (302)
T PRK05368 32 DIRPLKILILNLMPKKIE-------TETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLI 104 (302)
T ss_pred cCCCccEEEEeCCCCCch-------HHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEE
Confidence 345789999999999863 3456788887777676554433322111 111 25799999
Q ss_pred EcCCCCC--CCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccc
Q 025645 67 ISGSPYD--AYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLED 144 (250)
Q Consensus 67 i~Gg~~~--~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~ 144 (250)
|||+|.+ ++++.+|+.++.++++++.+..+|+||||||||+++.++||..+.....+..|+...+++.. .++++++
T Consensus 105 ITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~~~~~--~~pL~~g 182 (302)
T PRK05368 105 ITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHRVLDP--HHPLLRG 182 (302)
T ss_pred EcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEEEcCC--CChhhcC
Confidence 9999988 88899999999999999999999999999999999999999744333447899988877643 6789998
Q ss_pred cCCCCCceEEEeeeccccc----ccCCccEEEEEcCCCceEEEEEC-CcEEEEecCCCCCHHHHH-HHHHHHh
Q 025645 145 LGEIPGSLSIMECHRDEVW----KVPIGAEVIGFSDKTGVEMFTIG-DHILGIQGHPEYTKDILY-NLIDRLL 211 (250)
Q Consensus 145 ~~~l~~~~~~~~~H~~~v~----~lp~~~~~la~s~~~~v~~~~~~-~~~~g~QfHPE~~~~~~~-~~~~~~~ 211 (250)
+++.|.+.++|.+.|. .+|+++++||+|+.|+++++..+ ++++++||||||+...+. ...+.+.
T Consensus 183 ---~~d~F~~phSr~~~V~~~~i~~~~~l~vLA~S~~~gv~~~~~~~~r~~~vQgHPEYd~~tL~~EY~RD~~ 252 (302)
T PRK05368 183 ---FDDSFLVPHSRYTEVREEDIRAATGLEILAESEEAGVYLFASKDKREVFVTGHPEYDADTLAQEYFRDLG 252 (302)
T ss_pred ---CCCccccceeehhhccHHHhccCCCCEEEecCCCCCeEEEEeCCCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 8999999999988883 47899999999999999999984 479999999999988654 4444443
No 33
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.97 E-value=1.5e-30 Score=244.32 Aligned_cols=184 Identities=20% Similarity=0.244 Sum_probs=148.0
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHH
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKL 84 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~ 84 (250)
..+||+||+.+. ++...+.++|++.|+++.+++....+ ...+..++|+|||+|||+++.+. .+
T Consensus 515 ~~~~IlVID~gd----------s~~~~l~~~L~~~G~~v~vv~~~~~~--~~~~~~~~DgLILsgGPGsp~d~-----~~ 577 (717)
T TIGR01815 515 EGRRILLVDHED----------SFVHTLANYLRQTGASVTTLRHSHAE--AAFDERRPDLVVLSPGPGRPADF-----DV 577 (717)
T ss_pred CCCEEEEEECCC----------hhHHHHHHHHHHCCCeEEEEECCCCh--hhhhhcCCCEEEEcCCCCCchhc-----cc
Confidence 457899997653 24567889999999999887654221 11123569999999999998643 34
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccc--
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEV-- 162 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v-- 162 (250)
.++++++.+.++|+||||+|||+|+.++||+|.+.+.+.+..+.++.++. .+++|.+ +|..+.++++|++.+
T Consensus 578 ~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~~p~~G~~~~V~~~~---~~~Lf~~---lp~~~~v~~~HS~~~~~ 651 (717)
T TIGR01815 578 AGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPEPVHGKASRIRVLG---PDALFAG---LPERLTVGRYHSLFARR 651 (717)
T ss_pred HHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECCCCeeCcceEEEECC---CChhhhc---CCCCCEEEEECCCCccc
Confidence 56788888899999999999999999999999998764333367787763 4578988 888999999999876
Q ss_pred cccCCccEEEEEcCCCceEEEEECC-cEEEEecCCCC--------CHHHHHHHHHHHh
Q 025645 163 WKVPIGAEVIGFSDKTGVEMFTIGD-HILGIQGHPEY--------TKDILYNLIDRLL 211 (250)
Q Consensus 163 ~~lp~~~~~la~s~~~~v~~~~~~~-~~~g~QfHPE~--------~~~~~~~~~~~~~ 211 (250)
..+|++++++|+++++.++++++++ ++||+|||||. +.++++||+..+.
T Consensus 652 ~~LP~~~~vlA~s~d~~v~Ai~~~~~~i~GVQFHPEsi~T~sg~~G~~ilkNfl~~~~ 709 (717)
T TIGR01815 652 DRLPAELTVTAESADGLIMAIEHRRLPLAAVQFHPESIMTLDGGAGLAMIGNVVDRLA 709 (717)
T ss_pred ccCCCCeEEEEEeCCCcEEEEEECCCCEEEEEeCCeeCCccCchhHHHHHHHHHHHHh
Confidence 5789999999999999999999865 69999999994 4789999998774
No 34
>PRK13566 anthranilate synthase; Provisional
Probab=99.97 E-value=1.6e-30 Score=244.63 Aligned_cols=182 Identities=19% Similarity=0.236 Sum_probs=151.2
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-CCCCCCCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-FPDFNDLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
.++||+|++.+. ++...+.++|++.|+++.+++..... .+ +..++|||||+|||+++.+. .
T Consensus 525 ~g~~IlvID~~d----------sf~~~l~~~Lr~~G~~v~vv~~~~~~~~~---~~~~~DgVVLsgGpgsp~d~-----~ 586 (720)
T PRK13566 525 EGKRVLLVDHED----------SFVHTLANYFRQTGAEVTTVRYGFAEEML---DRVNPDLVVLSPGPGRPSDF-----D 586 (720)
T ss_pred CCCEEEEEECCC----------chHHHHHHHHHHCCCEEEEEECCCChhHh---hhcCCCEEEECCCCCChhhC-----C
Confidence 467899997663 24567889999999999988865321 12 23579999999999987532 3
Q ss_pred HHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc
Q 025645 84 LCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW 163 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~ 163 (250)
+.++++.+.+.++||||||+|||+|+.++||++.+.+.+.+.++.+|.++. .+++|++ +|+.+.++++|++.+.
T Consensus 587 ~~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~~~~~G~~~~V~v~~---~~~Lf~~---lp~~~~v~~~Hs~~v~ 660 (720)
T PRK13566 587 CKATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAYPMHGKPSRIRVRG---PGRLFSG---LPEEFTVGRYHSLFAD 660 (720)
T ss_pred cHHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECCCCccCCceEEEECC---CCchhhc---CCCCCEEEEecceeEe
Confidence 578899999999999999999999999999999998776667778898874 4578988 7889999999998874
Q ss_pred --ccCCccEEEEEcCCCceEEEEECC-cEEEEecCCCC--------CHHHHHHHHHHH
Q 025645 164 --KVPIGAEVIGFSDKTGVEMFTIGD-HILGIQGHPEY--------TKDILYNLIDRL 210 (250)
Q Consensus 164 --~lp~~~~~la~s~~~~v~~~~~~~-~~~g~QfHPE~--------~~~~~~~~~~~~ 210 (250)
.+|++++++|.+++|.++++++++ ++||+|||||. +..+++||++.+
T Consensus 661 ~~~Lp~~~~vlA~s~dg~V~ai~~~~~pi~GVQFHPE~i~t~~~~~G~~ii~nfl~~~ 718 (720)
T PRK13566 661 PETLPDELLVTAETEDGVIMAIEHKTLPVAAVQFHPESIMTLGGDVGLRIIENVVRLL 718 (720)
T ss_pred eccCCCceEEEEEeCCCcEEEEEECCCCEEEEeccCeeCCcCCchhHHHHHHHHHHHh
Confidence 499999999999999999999974 89999999994 577899998765
No 35
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.97 E-value=8.8e-31 Score=206.52 Aligned_cols=179 Identities=22% Similarity=0.239 Sum_probs=134.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcC-CCCC-CCCCChhHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISG-SPYD-AYGNDNWILKL 84 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~G-g~~~-~~~~~~~~~~~ 84 (250)
++|+||+.+..+- .+..++|++.|.++.+.. +++++..+|+||+|| |... +.+.... ..+
T Consensus 2 ~~i~IIDyg~GNL----------~Sv~~Aler~G~~~~vs~-------d~~~i~~AD~liLPGVGaf~~am~~L~~-~gl 63 (204)
T COG0118 2 MMVAIIDYGSGNL----------RSVKKALERLGAEVVVSR-------DPEEILKADKLILPGVGAFGAAMANLRE-RGL 63 (204)
T ss_pred CEEEEEEcCcchH----------HHHHHHHHHcCCeeEEec-------CHHHHhhCCEEEecCCCCHHHHHHHHHh-cch
Confidence 5899998877642 345789999998877765 566788999999998 4332 2222221 256
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHH------------cCceEEecCC----CceeeEEEEEEecCCCCCCcccccCCC
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRA------------LGGKVGKAYT----GWDIGLRRVRIVNDLAPCSFLEDLGEI 148 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a------------~gg~v~~~~~----~~~~g~~~i~~~~~~~~~~l~~~~~~l 148 (250)
.+.|++..+.++|+||||+|||+|... +.|+|.+.+. -+|+||+.+.+. + .+++|.+ +
T Consensus 64 ~~~i~~~~~~~kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~-~--~~~l~~g---i 137 (204)
T COG0118 64 IEAIKEAVESGKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFV-R--GHPLFKG---I 137 (204)
T ss_pred HHHHHHHHhcCCCEEEEeHhHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccccceeecc-C--CChhhcC---C
Confidence 777888777899999999999999873 2367777653 489999999998 3 6899998 7
Q ss_pred CCceEEEeeecccccccCCccEEEEEcCCC-ceEEEEECCcEEEEecCCC----CCHHHHHHHHHHH
Q 025645 149 PGSLSIMECHRDEVWKVPIGAEVIGFSDKT-GVEMFTIGDHILGIQGHPE----YTKDILYNLIDRL 210 (250)
Q Consensus 149 ~~~~~~~~~H~~~v~~lp~~~~~la~s~~~-~v~~~~~~~~~~g~QfHPE----~~~~~~~~~~~~~ 210 (250)
++.-++|+.|||++.. .+.-.++++++.+ ++-|...+++++|+||||| .+.++++||++..
T Consensus 138 ~~~~~~YFVHSY~~~~-~~~~~v~~~~~YG~~f~AaV~k~N~~g~QFHPEKSg~~Gl~lL~NFl~~~ 203 (204)
T COG0118 138 PDGAYFYFVHSYYVPP-GNPETVVATTDYGEPFPAAVAKDNVFGTQFHPEKSGKAGLKLLKNFLEWI 203 (204)
T ss_pred CCCCEEEEEEEEeecC-CCCceEEEeccCCCeeEEEEEeCCEEEEecCcccchHHHHHHHHHHHhhc
Confidence 7778999999999853 2334466666555 4666666779999999999 5578899998753
No 36
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.97 E-value=2.3e-31 Score=225.48 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=157.7
Q ss_pred HHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcC-----CcEEEEeh
Q 025645 29 FNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQ-----KKVLGICF 103 (250)
Q Consensus 29 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~-----~PilGIC~ 103 (250)
...++++++++|..+.++.+......-+..++.+||||++||+.+. +..+|......+++.+++.+ +|+||||+
T Consensus 22 ~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~-~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiCl 100 (273)
T cd01747 22 AASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDI-DTSGYARTAKIIYNLALERNDAGDYFPVWGTCL 100 (273)
T ss_pred HHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcC-CccccchHHHHHHHHHHHhhhcCCCCcEEEEcH
Confidence 3578999999999998887653211111236789999999998776 35567777778888887764 89999999
Q ss_pred HHHHHHHHcCceEEe-cCCCceeeEEEEEEecCCCCCCcccccCCCCC--------ceEEEeeeccccc--ccC------
Q 025645 104 GHQVLCRALGGKVGK-AYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPG--------SLSIMECHRDEVW--KVP------ 166 (250)
Q Consensus 104 G~Qlla~a~gg~v~~-~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~--------~~~~~~~H~~~v~--~lp------ 166 (250)
|||+|+.++||++.. .....+.+..+++++++...+++|++ +|. ...++++|+++|. .+|
T Consensus 101 G~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~---~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~ 177 (273)
T cd01747 101 GFELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKR---FPPDLLKSLATEPLTMNNHRYGISPENFTENGLLS 177 (273)
T ss_pred HHHHHHHHhCCCccccCCCccccceEEEEEccccccChhhhc---CCHHHHHHHhcccHHHhhcccccCHhhcccccccc
Confidence 999999999997543 44445667799999987777889988 554 4468999999984 344
Q ss_pred CccEEEEEcCC--Cc--eEEEEECC-cEEEEecCCCCCHH------HHHHHHHHHhcCCCccHHHHHHHHhhccccCCcH
Q 025645 167 IGAEVIGFSDK--TG--VEMFTIGD-HILGIQGHPEYTKD------ILYNLIDRLLNNNSIEREFAENAKFGLEIAEPDR 235 (250)
Q Consensus 167 ~~~~~la~s~~--~~--v~~~~~~~-~~~g~QfHPE~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (250)
..+++++++.+ +. +.++++++ |+||+|||||-..- -+....+.+.....+...|+++++++.+++....
T Consensus 178 ~~~~vla~~~d~~g~~fis~ie~~~~pi~gvQFHPEks~few~~~~~~~hs~~ai~~~q~~a~ffv~e~r~n~~~f~~~~ 257 (273)
T cd01747 178 DFFNVLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVNEARKSNNRFESAE 257 (273)
T ss_pred cceEEEEEEecCCCceEEEEEEecCCceEEEecCCCcccccccccCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHH
Confidence 35688998755 22 46777765 89999999994410 0111122333345677889999999999998777
Q ss_pred HHHHHHHHHHh
Q 025645 236 KCWEKICRNFL 246 (250)
Q Consensus 236 ~~~~~~~~~f~ 246 (250)
++.+.+|+||-
T Consensus 258 ~~~~~lIyn~~ 268 (273)
T cd01747 258 EETKHLIYNYK 268 (273)
T ss_pred HHHHhhhccCC
Confidence 77889999983
No 37
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.97 E-value=2.4e-29 Score=230.19 Aligned_cols=214 Identities=16% Similarity=0.180 Sum_probs=148.1
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCC--CCcCEEEEcCCCCCCCCCChhHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDL--HKYDGFVISGSPYDAYGNDNWILKL 84 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l--~~~dglIi~Gg~~~~~~~~~~~~~~ 84 (250)
+||.|++. |++|+.++++.|++.|.++.+++.........+++ .++|+|||+|||+++++. .+..
T Consensus 2 ~~iLiIDn----------~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~-~~~~-- 68 (531)
T PRK09522 2 ADILLLDN----------IDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEA-GCMP-- 68 (531)
T ss_pred CeEEEEeC----------CChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhC-CCCH--
Confidence 36777742 34688899999999999888876321100011122 247899999999999654 2322
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeE-EEEEEecCCCCCCcccccCCCCCceEEEeeeccccc
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGL-RRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW 163 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~ 163 (250)
++++++ ..++||||||+|||+|+.++||+|.+.+. ...|. ..+... ..++|.+ +|..+.++++|++.|.
T Consensus 69 -~i~~~~-~~~iPILGIClG~QlLa~a~GG~V~~~~~-~~~G~~~~i~~~----~~~lf~~---~~~~~~v~~~Hs~~v~ 138 (531)
T PRK09522 69 -ELLTRL-RGKLPIIGICLGHQAIVEAYGGYVGQAGE-ILHGKASSIEHD----GQAMFAG---LTNPLPVARYHSLVGS 138 (531)
T ss_pred -HHHHHH-hcCCCEEEEcHHHHHHHHhcCCEEEeCCc-eeeeeEEEEeec----CCccccC---CCCCcEEEEehheecc
Confidence 333332 45899999999999999999999998754 23344 333322 3568887 7888999999999999
Q ss_pred ccCCccEEEEEcCCCceEEEEECC-cEEEEecCCC-----CCHHHHHHHHHHH---hcCCCccHHHHHHHHhhccccCCc
Q 025645 164 KVPIGAEVIGFSDKTGVEMFTIGD-HILGIQGHPE-----YTKDILYNLIDRL---LNNNSIEREFAENAKFGLEIAEPD 234 (250)
Q Consensus 164 ~lp~~~~~la~s~~~~v~~~~~~~-~~~g~QfHPE-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 234 (250)
.+|++++++|++ ++.++++++++ ++||+||||| .+..+++||++.. +...+...+.++..... ..-.
T Consensus 139 ~lP~~l~vlA~s-d~~v~ai~~~~~~i~GVQFHPEs~~T~~G~~il~NFl~~~~~~~~~~~~~~~~l~~~~~~---~~Lt 214 (531)
T PRK09522 139 NIPAGLTINAHF-NGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPTNTLQPILEKLYQA---QTLS 214 (531)
T ss_pred cCCCCcEEEEec-CCCEEEEEECCCCEEEEEecCccccCcchHHHHHHHHHHHhhcCCCCCCHHHHHHHhhcC---CCCC
Confidence 999999999975 55688998854 7999999999 5688999999754 23444444555544322 1123
Q ss_pred HHHHHHHHHHHhc
Q 025645 235 RKCWEKICRNFLK 247 (250)
Q Consensus 235 ~~~~~~~~~~f~~ 247 (250)
+++...++...+.
T Consensus 215 ~eea~~~~~~il~ 227 (531)
T PRK09522 215 QQESHQLFSAVVR 227 (531)
T ss_pred HHHHHHHHHHHHc
Confidence 4455555555443
No 38
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.97 E-value=7.4e-30 Score=234.87 Aligned_cols=206 Identities=20% Similarity=0.225 Sum_probs=147.5
Q ss_pred hCCHHHHHHHHHhcCCCc-eEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEeh
Q 025645 25 YGGYFNVFVAAFGEEGER-WDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICF 103 (250)
Q Consensus 25 ~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~ 103 (250)
|++|+.++++.|++.|.+ +.++.....+..+. ...++||||++|||++++++.. ..++++.+ ..++||||||+
T Consensus 8 ~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~-~~~~~d~vIlsgGP~~p~~~~~----~~~li~~~-~~~~PvLGICl 81 (534)
T PRK14607 8 YDSFTYNIYQYIGELGPEEIEVVRNDEITIEEI-EALNPSHIVISPGPGRPEEAGI----SVEVIRHF-SGKVPILGVCL 81 (534)
T ss_pred chhHHHHHHHHHHHcCCCeEEEECCCCCCHHHH-HhcCCCEEEECCCCCChhhCCc----cHHHHHHh-hcCCCEEEEcH
Confidence 446888999999999986 55443322221111 1135799999999999876532 24556654 56899999999
Q ss_pred HHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc--ccCCccEEEEEcCCCceE
Q 025645 104 GHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW--KVPIGAEVIGFSDKTGVE 181 (250)
Q Consensus 104 G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~--~lp~~~~~la~s~~~~v~ 181 (250)
|||+|+.++||+|.+.+...+..+..+... .+++|++ +++.+.++++|++.|. .+|++++++|++++|.++
T Consensus 82 G~QlLa~a~Gg~V~~~~~~~~G~~~~v~~~----~~~lf~~---~~~~~~v~~~Hs~~v~~~~lp~~~~vlA~s~d~~i~ 154 (534)
T PRK14607 82 GHQAIGYAFGGKIVHAKRILHGKTSPIDHN----GKGLFRG---IPNPTVATRYHSLVVEEASLPECLEVTAKSDDGEIM 154 (534)
T ss_pred HHHHHHHHcCCeEecCCccccCCceeEEEC----CCcchhc---CCCCcEEeeccchheecccCCCCeEEEEEcCCCCEE
Confidence 999999999999999876555555566554 4568887 7888999999999984 699999999999999999
Q ss_pred EEEECC-cEEEEecCCCC-----CHHHHHHHHHHHhcCCCccHHHHHHHHhhccccCCcHHHHHHHHHHHhc
Q 025645 182 MFTIGD-HILGIQGHPEY-----TKDILYNLIDRLLNNNSIEREFAENAKFGLEIAEPDRKCWEKICRNFLK 247 (250)
Q Consensus 182 ~~~~~~-~~~g~QfHPE~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 247 (250)
++++++ ++||+|||||. +..++++|++.... .....+.+++..+.- .-.+++...++...+.
T Consensus 155 a~~~~~~pi~GvQFHPE~~~t~~g~~i~~nFl~~~~~-~~~~~~~i~~l~~g~---~Lt~~ea~~~~~~il~ 222 (534)
T PRK14607 155 GIRHKEHPIFGVQFHPESILTEEGKRILKNFLNYQRE-EIDIKSYLKKLVEGE---DLSFEEAEDVMEDITD 222 (534)
T ss_pred EEEECCCCEEEEEeCCCCCCChhHHHHHHHHHHHhhc-cCCHHHHHHHhccCC---CCCHHHHHHHHHHHHc
Confidence 999977 69999999994 46899999986543 222333444433221 1234455555554443
No 39
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.97 E-value=7.8e-30 Score=208.28 Aligned_cols=179 Identities=16% Similarity=0.138 Sum_probs=130.0
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHH--HH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWIL--KL 84 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~--~~ 84 (250)
+||+||+.+...- ..+.++|+..|.++.+++ .++++.++|+||+||+. +......++. .+
T Consensus 2 ~~v~iid~~~GN~----------~sl~~al~~~g~~v~vv~-------~~~~l~~~d~iIlPG~g-~~~~~~~~l~~~gl 63 (210)
T CHL00188 2 MKIGIIDYSMGNL----------HSVSRAIQQAGQQPCIIN-------SESELAQVHALVLPGVG-SFDLAMKKLEKKGL 63 (210)
T ss_pred cEEEEEEcCCccH----------HHHHHHHHHcCCcEEEEc-------CHHHhhhCCEEEECCCC-chHHHHHHHHHCCH
Confidence 4799998775431 346789999999888775 22356789999998843 2211112221 34
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHH-----------cCceEEecC-----CCceeeEEEEEEecCCCC---CCccccc
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRA-----------LGGKVGKAY-----TGWDIGLRRVRIVNDLAP---CSFLEDL 145 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a-----------~gg~v~~~~-----~~~~~g~~~i~~~~~~~~---~~l~~~~ 145 (250)
.+.++++.+.++|+||||+|||+|+.. ++|+|.+.+ +.+++||.+++++.+... +++|.+
T Consensus 64 ~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~- 142 (210)
T CHL00188 64 ITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKA- 142 (210)
T ss_pred HHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcC-
Confidence 456777778899999999999999986 567888774 347899999999754222 468988
Q ss_pred CCCCCceEEEeeecccccccCCccEEEEEcCCC----ceEEEEECCcEEEEecCCCC----CHHHHHHHHHH
Q 025645 146 GEIPGSLSIMECHRDEVWKVPIGAEVIGFSDKT----GVEMFTIGDHILGIQGHPEY----TKDILYNLIDR 209 (250)
Q Consensus 146 ~~l~~~~~~~~~H~~~v~~lp~~~~~la~s~~~----~v~~~~~~~~~~g~QfHPE~----~~~~~~~~~~~ 209 (250)
+|+.+.++++|++.+. |++...++.+..+ .+++++++ +++|+|||||. +..+++||++.
T Consensus 143 --l~~~~~v~~~HS~~v~--p~~~~~l~~t~~~~~~~~v~a~~~~-~i~GvQFHPE~s~~~G~~il~nfl~~ 209 (210)
T CHL00188 143 --WPLNPWAYFVHSYGVM--PKSQACATTTTFYGKQQMVAAIEYD-NIFAMQFHPEKSGEFGLWLLREFMKK 209 (210)
T ss_pred --CCCCCEEEEeCccEec--CCCCceEEEEEecCCcceEEEEecC-CEEEEecCCccccHhHHHHHHHHHhh
Confidence 8999999999999873 5555556655333 38899874 89999999994 46688888753
No 40
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.97 E-value=1.2e-29 Score=213.32 Aligned_cols=177 Identities=21% Similarity=0.205 Sum_probs=124.8
Q ss_pred HHHHHHHhcCCCceEEEEeecCC-CCCCCCCCCcCEEEEcCCCCCC----CC---C----ChhH-HHHHHHHHHHHhcCC
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGD-FPDFNDLHKYDGFVISGSPYDA----YG---N----DNWI-LKLCFMLQTLDAMQK 96 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~l~~~dglIi~Gg~~~~----~~---~----~~~~-~~~~~~i~~~~~~~~ 96 (250)
..+.+++.++|.....+.....+ ......++.+||||++||+.+. |. . .++. ..+.++++.+.+.++
T Consensus 29 ~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~ 108 (254)
T PRK11366 29 EKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRI 108 (254)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCC
Confidence 44667777777654444321111 0011224669999999998654 21 1 1222 346789999999999
Q ss_pred cEEEEehHHHHHHHHcCceEEecC----CC------c-------eeeEEEEEEecCCCCCCcccccCCCCCceEEEeeec
Q 025645 97 KVLGICFGHQVLCRALGGKVGKAY----TG------W-------DIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHR 159 (250)
Q Consensus 97 PilGIC~G~Qlla~a~gg~v~~~~----~~------~-------~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~ 159 (250)
||||||+|||+|+.++||++.+.. .. + ....+.|++++++....++.+ ++.+.+..+|+
T Consensus 109 PILGICrG~Qllnva~GGtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~~~s~l~~i~~~----~~~~~Vns~H~ 184 (254)
T PRK11366 109 PIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVEEGGLLSALLPE----CSNFWVNSLHG 184 (254)
T ss_pred CEEEECHhHHHHHHHhCCeEeecccccccccccccCCccccccccCCceEEEECCCCcHHHhcCC----CceEEeehHHH
Confidence 999999999999999999998751 10 0 113577777754322233321 25688999999
Q ss_pred ccccccCCccEEEEEcCCCceEEEEECCc--EEEEecCCCCC-------HHHHHHHHHHH
Q 025645 160 DEVWKVPIGAEVIGFSDKTGVEMFTIGDH--ILGIQGHPEYT-------KDILYNLIDRL 210 (250)
Q Consensus 160 ~~v~~lp~~~~~la~s~~~~v~~~~~~~~--~~g~QfHPE~~-------~~~~~~~~~~~ 210 (250)
++|..+|++++++|.++++.++|++++++ ++|+|||||+. ..++++|++..
T Consensus 185 q~V~~l~~gl~v~A~s~dg~ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~ 244 (254)
T PRK11366 185 QGAKVVSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITAC 244 (254)
T ss_pred HHHhhcccceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999764 69999999953 45788887654
No 41
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.97 E-value=5.1e-30 Score=208.68 Aligned_cols=165 Identities=21% Similarity=0.215 Sum_probs=126.9
Q ss_pred HHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCC-CChhHHHHHHHHHHHHhcCCcEEEEehHHH
Q 025645 28 YFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYG-NDNWILKLCFMLQTLDAMQKKVLGICFGHQ 106 (250)
Q Consensus 28 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~-~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q 106 (250)
+...++++|++.|+++++++ ...+++++|+||||||...... ...|.....+.++.+.+.++||||||+|||
T Consensus 10 ~~~~~~~~l~~~g~~v~v~~-------~~~~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q 82 (198)
T cd01748 10 NLRSVANALERLGAEVIITS-------DPEEILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQ 82 (198)
T ss_pred hHHHHHHHHHHCCCeEEEEc-------ChHHhccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHH
Confidence 34567899999999988876 2234678999999886332110 112334567888988888999999999999
Q ss_pred HHHHH------------cCceEEecCCC-----ceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccccCCcc
Q 025645 107 VLCRA------------LGGKVGKAYTG-----WDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVPIGA 169 (250)
Q Consensus 107 lla~a------------~gg~v~~~~~~-----~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~lp~~~ 169 (250)
+|+.+ ++|++.+.+.+ ++.|+..+..++ .+++|++ +|+.+.++++|++.+. .|+.+
T Consensus 83 ~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~~---~~~lf~~---l~~~~~v~~~Hs~~v~-~~~~~ 155 (198)
T cd01748 83 LLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEITK---ESPLFKG---IPDGSYFYFVHSYYAP-PDDPD 155 (198)
T ss_pred HhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccceEEECC---CChhhhC---CCCCCeEEEEeEEEEe-cCCcc
Confidence 99998 78999887642 488999998764 5678888 8889999999999986 45568
Q ss_pred EEEEEcCCC-ceEEEEECCcEEEEecCCCCCH----HHHHHH
Q 025645 170 EVIGFSDKT-GVEMFTIGDHILGIQGHPEYTK----DILYNL 206 (250)
Q Consensus 170 ~~la~s~~~-~v~~~~~~~~~~g~QfHPE~~~----~~~~~~ 206 (250)
.++|+++++ .++++..++++||+|||||... .++++|
T Consensus 156 ~~la~s~~~~~~~~~~~~~~i~GvQFHPE~~~~~g~~~~~nf 197 (198)
T cd01748 156 YILATTDYGGKFPAAVEKDNIFGTQFHPEKSGKAGLKLLKNF 197 (198)
T ss_pred eEEEEecCCCeEEEEEEcCCEEEEECCCccccHhHHHHHHhh
Confidence 889988764 4667777779999999999654 355554
No 42
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=1.2e-29 Score=205.74 Aligned_cols=174 Identities=18% Similarity=0.213 Sum_probs=128.8
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
|+|+|++.+... ..++.++|++.|+++.+++ +++++.++|+||+||+.... +...+. ....
T Consensus 1 m~i~iid~g~gn----------~~s~~~~l~~~g~~~~~v~-------~~~~~~~~d~iIlPG~G~~~-~~~~~l-~~~~ 61 (196)
T PRK13170 1 MNVVIIDTGCAN----------LSSVKFAIERLGYEPVVSR-------DPDVILAADKLFLPGVGTAQ-AAMDQL-RERE 61 (196)
T ss_pred CeEEEEeCCCch----------HHHHHHHHHHCCCeEEEEC-------CHHHhCCCCEEEECCCCchH-HHHHHH-HHcC
Confidence 478999866543 4567889999999888775 33457789999998853322 222222 1223
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHHcC------------ceEEecC----CCceeeEEEEEEecCCCCCCcccccCCCCC
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRALG------------GKVGKAY----TGWDIGLRRVRIVNDLAPCSFLEDLGEIPG 150 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a~g------------g~v~~~~----~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~ 150 (250)
+++.+.+.++||||||+|||+|+.+++ |++.+.+ ..+++||++|++.+ .+++|++ +|+
T Consensus 62 l~~~i~~~~~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~~v~~~~---~~~l~~~---l~~ 135 (196)
T PRK13170 62 LIDLIKACTQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQA---GHPLFQG---IED 135 (196)
T ss_pred hHHHHHHcCCCEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCCCCCCCCccccceeEeCC---CChhhhC---CCc
Confidence 455566678999999999999999972 4566542 34689999999863 4678888 888
Q ss_pred ceEEEeeecccccccCCccEEEEEcCCC-ceEEEEECCcEEEEecCCC----CCHHHHHHHHH
Q 025645 151 SLSIMECHRDEVWKVPIGAEVIGFSDKT-GVEMFTIGDHILGIQGHPE----YTKDILYNLID 208 (250)
Q Consensus 151 ~~~~~~~H~~~v~~lp~~~~~la~s~~~-~v~~~~~~~~~~g~QfHPE----~~~~~~~~~~~ 208 (250)
.+.++++|++. +|++..++|+++.+ .++++..++++||+||||| .+..++++|++
T Consensus 136 ~~~v~~~Hs~~---lp~~~~~la~s~~~~~~~~~~~~~~i~G~QFHPE~~~~~G~~~l~nfl~ 195 (196)
T PRK13170 136 GSYFYFVHSYA---MPVNEYTIAQCNYGEPFSAAIQKDNFFGVQFHPERSGAAGAQLLKNFLE 195 (196)
T ss_pred CCEEEEECeee---cCCCCcEEEEecCCCeEEEEEEcCCEEEEECCCCCcccccHHHHHHHhh
Confidence 99999999987 47777889988764 4566666778999999999 45678888864
No 43
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=1.9e-29 Score=206.34 Aligned_cols=176 Identities=20% Similarity=0.209 Sum_probs=136.0
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCC--hhHHHHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGND--NWILKLCF 86 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~--~~~~~~~~ 86 (250)
|+||+.+.. +...+++.|++.|+++++++ .+.++.++|+||||||.... +.. .|...+.+
T Consensus 2 i~~~d~~~~----------~~~~i~~~l~~~G~~v~~~~-------~~~~l~~~d~iiipG~~~~~-~~~~~~~~~~~~~ 63 (205)
T PRK13141 2 IAIIDYGMG----------NLRSVEKALERLGAEAVITS-------DPEEILAADGVILPGVGAFP-DAMANLRERGLDE 63 (205)
T ss_pred EEEEEcCCc----------hHHHHHHHHHHCCCeEEEEC-------CHHHhccCCEEEECCCCchH-HHHHHHHHcChHH
Confidence 677766543 23557899999999988864 23457789999999864321 111 12335677
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHH------------cCceEEecCC-----CceeeEEEEEEecCCCCCCcccccCCCC
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRA------------LGGKVGKAYT-----GWDIGLRRVRIVNDLAPCSFLEDLGEIP 149 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a------------~gg~v~~~~~-----~~~~g~~~i~~~~~~~~~~l~~~~~~l~ 149 (250)
+++.+.+.++|+||||+|||+|+.+ ++|++.+.+. .++.|++.++++. .+++|++ +|
T Consensus 64 ~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~~---~~~l~~~---l~ 137 (205)
T PRK13141 64 VIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELKK---ESPLLKG---IP 137 (205)
T ss_pred HHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEcCCCCCCcccEecCccceeCC---CChhhhC---CC
Confidence 8888888999999999999999997 6789888752 3577999988874 5788988 78
Q ss_pred CceEEEeeecccccccCCccEEEEEcCCC-ceEEEEECCcEEEEecCCCCC----HHHHHHHHHH
Q 025645 150 GSLSIMECHRDEVWKVPIGAEVIGFSDKT-GVEMFTIGDHILGIQGHPEYT----KDILYNLIDR 209 (250)
Q Consensus 150 ~~~~~~~~H~~~v~~lp~~~~~la~s~~~-~v~~~~~~~~~~g~QfHPE~~----~~~~~~~~~~ 209 (250)
..+.++.+|++.+ .+|+++.++|+++++ .++++..++++||+|||||.. .+++++|++.
T Consensus 138 ~~~~v~~~Hs~~v-~~~~~~~v~a~~~~~~~~~a~~~~~~i~GvQfHPE~~~~~g~~l~~~fl~~ 201 (205)
T PRK13141 138 DGAYVYFVHSYYA-DPCDEEYVAATTDYGVEFPAAVGKDNVFGAQFHPEKSGDVGLKILKNFVEM 201 (205)
T ss_pred CCCEEEEECeeEe-ccCCcCeEEEEEeCCcEEEEEEecCCEEEEeCCCccchHHHHHHHHHHHHH
Confidence 8899999999998 578889999988766 688888878999999999965 4567777654
No 44
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.96 E-value=4.6e-29 Score=199.66 Aligned_cols=149 Identities=23% Similarity=0.220 Sum_probs=115.1
Q ss_pred HHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 32 FVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
+++++++.|..+.+++.... ....+..++||||++||++++.+ .....++++++.+.++|+||||+|||+|+.+
T Consensus 12 ~~~~l~~~G~~~~~~~~~~~--~~~~~~~~~dgiil~GG~~~~~~----~~~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~ 85 (178)
T cd01744 12 ILRELLKRGCEVTVVPYNTD--AEEILKLDPDGIFLSNGPGDPAL----LDEAIKTVRKLLGKKIPIFGICLGHQLLALA 85 (178)
T ss_pred HHHHHHHCCCeEEEEECCCC--HHHHhhcCCCEEEECCCCCChhH----hHHHHHHHHHHHhCCCCEEEECHHHHHHHHH
Confidence 68899999999988875432 11112357999999999977643 2566788999999999999999999999999
Q ss_pred cCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc--ccCCccEEEEEc-CCCceEEEEECC-
Q 025645 112 LGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW--KVPIGAEVIGFS-DKTGVEMFTIGD- 187 (250)
Q Consensus 112 ~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~--~lp~~~~~la~s-~~~~v~~~~~~~- 187 (250)
+||++.+.+.+.+...+++..... ...+.+.++|++.|. .+|++++++|++ +++.++++++++
T Consensus 86 ~Gg~v~~~~~~~~g~~~~v~~~~~-------------~~~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~i~a~~~~~~ 152 (178)
T cd01744 86 LGAKTYKMKFGHRGSNHPVKDLIT-------------GRVYITSQNHGYAVDPDSLPGGLEVTHVNLNDGTVEGIRHKDL 152 (178)
T ss_pred cCCceecCCCCCCCCceeeEEcCC-------------CCcEEEEcCceEEEcccccCCceEEEEEECCCCcEEEEEECCC
Confidence 999998876544444555544310 134557889999985 699999999997 577899999865
Q ss_pred cEEEEecCCCCC
Q 025645 188 HILGIQGHPEYT 199 (250)
Q Consensus 188 ~~~g~QfHPE~~ 199 (250)
++||+|||||..
T Consensus 153 ~i~GvQfHPE~~ 164 (178)
T cd01744 153 PVFSVQFHPEAS 164 (178)
T ss_pred CeEEEeeCCCCC
Confidence 799999999964
No 45
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=1.6e-28 Score=200.01 Aligned_cols=177 Identities=20% Similarity=0.241 Sum_probs=136.5
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
|||+||+.+... ...+.++|+++|.++.+++ .+.+++++|+||||||.. ..+..+|+..+.+
T Consensus 1 ~~~~v~~~~~~~----------~~~~~~~l~~~G~~~~~~~-------~~~~~~~~d~iii~G~~~-~~~~~~~~~~~~~ 62 (200)
T PRK13143 1 MMIVIIDYGVGN----------LRSVSKALERAGAEVVITS-------DPEEILDADGIVLPGVGA-FGAAMENLSPLRD 62 (200)
T ss_pred CeEEEEECCCcc----------HHHHHHHHHHCCCeEEEEC-------CHHHHccCCEEEECCCCC-HHHHHHHHHHHHH
Confidence 578999876543 3457899999999887764 223567899999998532 2233567888899
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHH------------cCceEEecCC---CceeeEEEEEEecCCCCCCcccccCCCCCc
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRA------------LGGKVGKAYT---GWDIGLRRVRIVNDLAPCSFLEDLGEIPGS 151 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a------------~gg~v~~~~~---~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~ 151 (250)
.++++.+.++|+||||+|+|+|+.+ +||++.+.+. ..+.|+..++++ ..+++|++ ++ .
T Consensus 63 ~i~~~~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~---~~~~l~~~---l~-~ 135 (200)
T PRK13143 63 VILEAARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVV---KDCPLFEG---ID-G 135 (200)
T ss_pred HHHHHHHcCCCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCeecceEEEEc---CCChhhcc---CC-C
Confidence 9999999999999999999999986 6888887643 246799998887 35778877 64 4
Q ss_pred eEEEeeecccccccCCccEEEEEcCC-CceEEEEECCcEEEEecCCCCCH----HHHHHHHHH
Q 025645 152 LSIMECHRDEVWKVPIGAEVIGFSDK-TGVEMFTIGDHILGIQGHPEYTK----DILYNLIDR 209 (250)
Q Consensus 152 ~~~~~~H~~~v~~lp~~~~~la~s~~-~~v~~~~~~~~~~g~QfHPE~~~----~~~~~~~~~ 209 (250)
..++++|++.+ .+++++.++|++++ +.++++..++++||+|||||++. +++++|++.
T Consensus 136 ~~~~~~Hs~~~-~~~~~~~~la~~~~~~~~~~~~~~~~~~gvQfHPE~~~~~g~~i~~~f~~~ 197 (200)
T PRK13143 136 EYVYFVHSYYA-YPDDEDYVVATTDYGIEFPAAVCNDNVFGTQFHPEKSGETGLKILENFVEL 197 (200)
T ss_pred cEEEEEeeeee-CCCCcceEEEEEcCCCEEEEEEEcCCEEEEeCCCccchHHHHHHHHHHHHH
Confidence 45888999987 46677899999986 45777777789999999999654 567777754
No 46
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=7.6e-29 Score=201.83 Aligned_cols=175 Identities=18% Similarity=0.173 Sum_probs=129.8
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChh--HHHHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNW--ILKLCF 86 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~--~~~~~~ 86 (250)
|+|++.+... ...+.++|++.|++++++. +++++.++|+||+|||.... ....+ ...+.+
T Consensus 2 i~vid~g~gn----------~~~~~~~l~~~g~~v~~~~-------~~~~l~~~d~lilpG~g~~~-~~~~~l~~~~~~~ 63 (199)
T PRK13181 2 IAIIDYGAGN----------LRSVANALKRLGVEAVVSS-------DPEEIAGADKVILPGVGAFG-QAMRSLRESGLDE 63 (199)
T ss_pred EEEEeCCCCh----------HHHHHHHHHHCCCcEEEEc-------ChHHhccCCEEEECCCCCHH-HHHHHHHHCChHH
Confidence 7788766543 3557889999999887763 23457789999999864321 11111 123567
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHH-----------cCceEEecCC----CceeeEEEEEEecCCCCCCcccccCCCCCc
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRA-----------LGGKVGKAYT----GWDIGLRRVRIVNDLAPCSFLEDLGEIPGS 151 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a-----------~gg~v~~~~~----~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~ 151 (250)
.++.+.+.++|+||||+|||+|+.+ +++++.+.+. .++.|++++++.+ .+++|++ +|+.
T Consensus 64 ~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~~v~~~~---~~~lf~~---l~~~ 137 (199)
T PRK13181 64 ALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPLK---ESPLFKG---IEEG 137 (199)
T ss_pred HHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCCccCccccccCC---CChhHcC---CCCC
Confidence 7787788899999999999999999 7889988653 2689999998763 5789988 8888
Q ss_pred eEEEeeecccccccCCccEEEEEcCC-CceEEEEECCcEEEEecCCCCC----HHHHHHHHH
Q 025645 152 LSIMECHRDEVWKVPIGAEVIGFSDK-TGVEMFTIGDHILGIQGHPEYT----KDILYNLID 208 (250)
Q Consensus 152 ~~~~~~H~~~v~~lp~~~~~la~s~~-~~v~~~~~~~~~~g~QfHPE~~----~~~~~~~~~ 208 (250)
+.++++|++.+...+ ...++|+++. +.+++...++++||+|||||.. ..++++|++
T Consensus 138 ~~~~~~Hs~~v~~~~-~~~~lA~s~~~~~~~~~~~~~~i~GvQFHPE~~~~~g~~ll~nfl~ 198 (199)
T PRK13181 138 SYFYFVHSYYVPCED-PEDVLATTEYGVPFCSAVAKDNIYAVQFHPEKSGKAGLKLLKNFAE 198 (199)
T ss_pred CEEEEeCeeEeccCC-cccEEEEEcCCCEEEEEEECCCEEEEECCCccCCHHHHHHHHHHHh
Confidence 999999999985444 4568898876 4455555566899999999965 456777653
No 47
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.96 E-value=2.4e-28 Score=198.31 Aligned_cols=163 Identities=21% Similarity=0.258 Sum_probs=121.1
Q ss_pred HHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHH--HHHHHHHHHhcCCcEEEEehHHH
Q 025645 29 FNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILK--LCFMLQTLDAMQKKVLGICFGHQ 106 (250)
Q Consensus 29 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~--~~~~i~~~~~~~~PilGIC~G~Q 106 (250)
...+.++|+..|+++++++ .+.+++++|+||+||+. +..+..+|+.. ...+++++.+.++|+||||+|+|
T Consensus 11 ~~~l~~~l~~~g~~v~v~~-------~~~~l~~~d~lii~G~~-~~~~~~~~l~~~~~~~l~~~~~~~~~pvlGiC~G~Q 82 (196)
T TIGR01855 11 LGSVKRALKRVGAEPVVVK-------DSKEAELADKLILPGVG-AFGAAMARLRENGLDLFVELVVRLGKPVLGICLGMQ 82 (196)
T ss_pred HHHHHHHHHHCCCcEEEEc-------CHHHhccCCEEEECCCC-CHHHHHHHHHHcCcHHHHHHHHhCCCCEEEECHHHH
Confidence 4567889999999988876 22346789999998843 22122333333 23455778888999999999999
Q ss_pred HHHHH------------cCceEEecC--CCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccccCCccEEE
Q 025645 107 VLCRA------------LGGKVGKAY--TGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVPIGAEVI 172 (250)
Q Consensus 107 lla~a------------~gg~v~~~~--~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~lp~~~~~l 172 (250)
+|+.+ +||++.+.+ ...+.|+..+... ..+++|++ +|+.+.++++|++.+...| +. ++
T Consensus 83 ll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~~~~~~---~~~~l~~~---l~~~~~v~~~Hs~~v~~~~-~~-~~ 154 (196)
T TIGR01855 83 LLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHPV---KESPLLNG---IDEGAYFYFVHSYYAVCEE-EA-VL 154 (196)
T ss_pred HhhhccccCCCCCCcceeeEEEEECCCCCCCcccCeeeeeC---CCChHHhC---CCCCCEEEEECeeEecCCC-Cc-EE
Confidence 99999 788998874 3468888888765 35778998 8899999999999986444 54 55
Q ss_pred EEcC-CCceEEEEECCcEEEEecCCCCCH----HHHHHHH
Q 025645 173 GFSD-KTGVEMFTIGDHILGIQGHPEYTK----DILYNLI 207 (250)
Q Consensus 173 a~s~-~~~v~~~~~~~~~~g~QfHPE~~~----~~~~~~~ 207 (250)
+.++ .+.++++..++++||+|||||... .++++|+
T Consensus 155 a~~~~g~~~~~~~~~~~i~GvQFHPE~~~~~g~~ll~~f~ 194 (196)
T TIGR01855 155 AYADYGEKFPAAVQKGNIFGTQFHPEKSGKTGLKLLENFL 194 (196)
T ss_pred EEEcCCcEEEEEEecCCEEEEECCCccCcHhHHHHHHHHH
Confidence 6554 466777777778999999999764 4555554
No 48
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.96 E-value=3.1e-28 Score=212.75 Aligned_cols=173 Identities=21% Similarity=0.217 Sum_probs=132.0
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
.+||+|++++.. .++.++|++.|..+.++.... ...+... .++|||||+|||+++.+. ....
T Consensus 177 ~~~I~viD~G~k------------~nivr~L~~~G~~v~vvp~~~-~~~~i~~-~~~DGIvLSgGPgdp~~~----~~~~ 238 (360)
T PRK12564 177 KYKVVAIDFGVK------------RNILRELAERGCRVTVVPATT-TAEEILA-LNPDGVFLSNGPGDPAAL----DYAI 238 (360)
T ss_pred CCEEEEEeCCcH------------HHHHHHHHHCCCEEEEEeCCC-CHHHHHh-cCCCEEEEeCCCCChHHH----HHHH
Confidence 468999987632 346889999999988876432 1111111 268999999999876432 4567
Q ss_pred HHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc--
Q 025645 86 FMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW-- 163 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~-- 163 (250)
++++++.+.++|+||||+|||+|+.++||++.+++.+.+...+++..... ...+.+.++|+++|.
T Consensus 239 ~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~~gh~G~~~pv~~~~~-------------~~~~its~~H~~~V~~~ 305 (360)
T PRK12564 239 EMIRELLEKKIPIFGICLGHQLLALALGAKTYKMKFGHRGANHPVKDLET-------------GKVEITSQNHGFAVDED 305 (360)
T ss_pred HHHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccCCCccCCceeeEECCC-------------CcEEEEecCcccEEccc
Confidence 88888888899999999999999999999999988776666666655421 133457789999995
Q ss_pred ccCCccEEEEEc-CCCceEEEEECC-cEEEEecCCCCC------HHHHHHHHHH
Q 025645 164 KVPIGAEVIGFS-DKTGVEMFTIGD-HILGIQGHPEYT------KDILYNLIDR 209 (250)
Q Consensus 164 ~lp~~~~~la~s-~~~~v~~~~~~~-~~~g~QfHPE~~------~~~~~~~~~~ 209 (250)
.+|+++++++.+ +++.++++++++ ++||+|||||.. ..+|++|++.
T Consensus 306 ~lp~~l~v~a~~~~Dg~iegi~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~ 359 (360)
T PRK12564 306 SLPANLEVTHVNLNDGTVEGLRHKDLPAFSVQYHPEASPGPHDSAYLFDEFVEL 359 (360)
T ss_pred ccCCceEEEEEeCCCCcEEEEEECCCCEEEEEeCCcCCCCCCCHHHHHHHHHHh
Confidence 799999999998 578899999975 799999999943 4578888754
No 49
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.96 E-value=1e-27 Score=227.81 Aligned_cols=185 Identities=21% Similarity=0.252 Sum_probs=138.6
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcC-CCceEEEEeecCCCCCCC----CCCCcCEEEEcCCCCCCCCCChhH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEE-GERWDLFRVVEGDFPDFN----DLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~----~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
+||++|+ + |++|+.+++++|++. |.++.+++.....+.... .+..+|+|||+|||+++... ...
T Consensus 82 ~~iLlID-n---------yDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~-~d~ 150 (918)
T PLN02889 82 VRTLLID-N---------YDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCP-ADI 150 (918)
T ss_pred ceEEEEe-C---------CCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccch-HHH
Confidence 5676663 3 556888999999998 988887764322211111 13578999999999987432 112
Q ss_pred HHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCC----ceEEEee
Q 025645 82 LKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPG----SLSIMEC 157 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~----~~~~~~~ 157 (250)
.-..+++..+ .++||||||+|||+|+.++||+|.+.+...++....|... .+.+|.+ +|+ .|.+..|
T Consensus 151 Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~~~~HG~~s~I~h~----~~~lF~g---lp~~~~~~f~v~RY 221 (918)
T PLN02889 151 GICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAPEPVHGRLSEIEHN----GCRLFDD---IPSGRNSGFKVVRY 221 (918)
T ss_pred HHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCCCceeeeeeeEeec----CchhhcC---CCcCCCCCceEEeC
Confidence 2234444432 4799999999999999999999999987655556667654 4578998 776 5999999
Q ss_pred eccccc--ccCCccEEEEEcCC-----------------------------------------------------CceEE
Q 025645 158 HRDEVW--KVPIGAEVIGFSDK-----------------------------------------------------TGVEM 182 (250)
Q Consensus 158 H~~~v~--~lp~~~~~la~s~~-----------------------------------------------------~~v~~ 182 (250)
|+..|. .+|++++++|.+++ +.+++
T Consensus 222 HSL~v~~~~lP~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMa 301 (918)
T PLN02889 222 HSLVIDAESLPKELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMG 301 (918)
T ss_pred CCcccccCCCCCceEEEEEECCCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEE
Confidence 999984 69999999997654 35889
Q ss_pred EEECC-cEEEEecCCC-----CCHHHHHHHHHHHh
Q 025645 183 FTIGD-HILGIQGHPE-----YTKDILYNLIDRLL 211 (250)
Q Consensus 183 ~~~~~-~~~g~QfHPE-----~~~~~~~~~~~~~~ 211 (250)
++|+. |+||+||||| .+..+++||++...
T Consensus 302 irH~~~P~~GVQfHPESi~t~~G~~l~~nF~~~~~ 336 (918)
T PLN02889 302 IMHSTRPHYGLQFHPESIATCYGRQIFKNFREITQ 336 (918)
T ss_pred EEECCCceEEEEeCCccccCchhHHHHHHHHHHHH
Confidence 99976 8999999999 57889999998553
No 50
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.96 E-value=1.6e-28 Score=198.28 Aligned_cols=144 Identities=23% Similarity=0.244 Sum_probs=110.6
Q ss_pred hCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCC---C----------ChhHHHHHHHHHHH
Q 025645 25 YGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYG---N----------DNWILKLCFMLQTL 91 (250)
Q Consensus 25 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~---~----------~~~~~~~~~~i~~~ 91 (250)
+..+...+.++|+..|..+.++.........+..+.++||||+|||+....+ + ........++++.+
T Consensus 17 ~~~~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 96 (189)
T cd01745 17 RDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAA 96 (189)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHH
Confidence 4456677889999999887776533211000123578999999999864311 0 11112347788888
Q ss_pred HhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccccCCccEE
Q 025645 92 DAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVPIGAEV 171 (250)
Q Consensus 92 ~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~lp~~~~~ 171 (250)
.+.++|+||||+|||+|+.++||++.+.+ .++.+|++.|.++|+++++
T Consensus 97 ~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~--------------------------------~v~~~H~~~v~~~~~~~~v 144 (189)
T cd01745 97 LERGKPILGICRGMQLLNVALGGTLYQDI--------------------------------RVNSLHHQAIKRLADGLRV 144 (189)
T ss_pred HHCCCCEEEEcchHHHHHHHhCCeEEcCC--------------------------------ceechHHHHHhhcCCCCEE
Confidence 88899999999999999999999987643 2457899999889999999
Q ss_pred EEEcCCCceEEEEECC--cEEEEecCCCCCH
Q 025645 172 IGFSDKTGVEMFTIGD--HILGIQGHPEYTK 200 (250)
Q Consensus 172 la~s~~~~v~~~~~~~--~~~g~QfHPE~~~ 200 (250)
+|+++++.++++++++ +++|+|||||...
T Consensus 145 la~~~d~~vea~~~~~~~~~~gvQfHPE~~~ 175 (189)
T cd01745 145 EARAPDGVIEAIESPDRPFVLGVQWHPEWLA 175 (189)
T ss_pred EEECCCCcEEEEEeCCCCeEEEEecCCCcCc
Confidence 9999999999999985 7999999999754
No 51
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.96 E-value=2.7e-28 Score=195.95 Aligned_cols=148 Identities=23% Similarity=0.243 Sum_probs=120.1
Q ss_pred HHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcC
Q 025645 34 AAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALG 113 (250)
Q Consensus 34 ~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~g 113 (250)
++|++.|+++..++. ..+++++|+||++||+.+.++...|.....+.++++.+.++|+||||+|+|+|+.+++
T Consensus 15 ~~l~~~g~~v~~v~~-------~~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~~~ 87 (183)
T cd01749 15 RALERLGVEVIEVRT-------PEDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKEVE 87 (183)
T ss_pred HHHHHCCCeEEEECC-------HHHhccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHHhc
Confidence 788899999888763 2347789999999998776665556666778889888999999999999999999999
Q ss_pred c------------eEEecCCCceeeEEEEEEecCCCCCCcccccCCC-CCceEEEeeecccccccCCccEEEEEcCCCce
Q 025645 114 G------------KVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEI-PGSLSIMECHRDEVWKVPIGAEVIGFSDKTGV 180 (250)
Q Consensus 114 g------------~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l-~~~~~~~~~H~~~v~~lp~~~~~la~s~~~~v 180 (250)
+ ++.+++.+++.|+....++. .+ . ++.+.+++.|.+.|..+|++++++|+++.|.+
T Consensus 88 ~~~~~~glG~~~~~v~~~~~g~~~g~~~~~l~~--------~~---~~~~~~~~~~~h~~~v~~~p~~~~~la~~~~~~~ 156 (183)
T cd01749 88 DQGGQPLLGLLDITVRRNAFGRQVDSFEADLDI--------PG---LGLGPFPAVFIRAPVIEEVGPGVEVLAEYDGKIV 156 (183)
T ss_pred ccCCCCccCceeEEEEeeccccccceEEEcCCC--------Cc---CCCCccEEEEEECcEEEEcCCCcEEEEecCCEEE
Confidence 8 77777777777766555431 22 2 36788999999999999999999999987765
Q ss_pred EEEEECCcEEEEecCCCCCHH
Q 025645 181 EMFTIGDHILGIQGHPEYTKD 201 (250)
Q Consensus 181 ~~~~~~~~~~g~QfHPE~~~~ 201 (250)
+++.+ ++||+|||||++..
T Consensus 157 -a~~~~-~~~g~qfHPE~~~~ 175 (183)
T cd01749 157 -AVRQG-NVLATSFHPELTDD 175 (183)
T ss_pred -EEEEC-CEEEEEcCCccCCC
Confidence 88766 79999999998754
No 52
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.95 E-value=6.5e-28 Score=196.97 Aligned_cols=178 Identities=19% Similarity=0.197 Sum_probs=126.9
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCCh--hHHHHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDN--WILKLCF 86 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~--~~~~~~~ 86 (250)
|+||+.+...- .+..+.++..+.++..++ +++++.++|+||+||+..- .+... +...+.+
T Consensus 2 i~iidyg~gNl----------~s~~~al~~~~~~~~~~~-------~~~~l~~~d~iIlPG~g~~-~~~~~~l~~~gl~~ 63 (210)
T PRK14004 2 IAILDYGMGNI----------HSCLKAVSLYTKDFVFTS-------DPETIENSKALILPGDGHF-DKAMENLNSTGLRS 63 (210)
T ss_pred EEEEECCCchH----------HHHHHHHHHcCCeEEEEC-------CHHHhccCCEEEECCCCch-HHHHHHHHHcCcHH
Confidence 78888776531 345788888888766553 4445778999999998531 11111 2235677
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHHcC------------------ceEEecC----CCceeeEEEEEEecCCCCCCcccc
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRALG------------------GKVGKAY----TGWDIGLRRVRIVNDLAPCSFLED 144 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a~g------------------g~v~~~~----~~~~~g~~~i~~~~~~~~~~l~~~ 144 (250)
.++++.+.++|+||||+|||+|+.+++ |+|.+.+ ..+++||+++++++. ..+++|.+
T Consensus 64 ~i~~~~~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v~~~~~-~~~~lf~~ 142 (210)
T PRK14004 64 TIDKHVESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRRK-DKSKLLKG 142 (210)
T ss_pred HHHHHHHcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcccceeccC-CCCccccC
Confidence 778778889999999999999999753 6666643 348999999988632 35678998
Q ss_pred cCCCCCceEEEeeecccccccCCccEEEEEcCC-Cc-eEEEEECCcEEEEecCCC----CCHHHHHHHHHH
Q 025645 145 LGEIPGSLSIMECHRDEVWKVPIGAEVIGFSDK-TG-VEMFTIGDHILGIQGHPE----YTKDILYNLIDR 209 (250)
Q Consensus 145 ~~~l~~~~~~~~~H~~~v~~lp~~~~~la~s~~-~~-v~~~~~~~~~~g~QfHPE----~~~~~~~~~~~~ 209 (250)
+++.+.++++|+|.+ ..+..+.+++.++. +. ++++..++++||+||||| ++..++++|++.
T Consensus 143 ---l~~~~~v~~~HS~~~-~~~~~l~~sa~~~~~g~~~~a~~~~~~i~GvQFHPE~s~~~G~~iL~nfl~~ 209 (210)
T PRK14004 143 ---IGDQSFFYFIHSYRP-TGAEGNAITGLCDYYQEKFPAVVEKENIFGTQFHPEKSHTHGLKLLENFIEF 209 (210)
T ss_pred ---CCCCCEEEEeceeec-CCCCcceEEEeeeECCEEEEEEEecCCEEEEeCCcccCchhHHHHHHHHHhh
Confidence 888999999999964 22333444444433 22 456777889999999999 457789998763
No 53
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.95 E-value=1.5e-27 Score=191.27 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=127.6
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFM 87 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~ 87 (250)
||+||....+.. . ..++|++.|.++.+++ .+++++++|+||||||+.+..+...|...+.+.
T Consensus 1 ~igvl~~qg~~~----------e-~~~~l~~~g~~~~~v~-------~~~~l~~~d~liipGG~~~~~~~l~~~~~l~~~ 62 (184)
T TIGR03800 1 KIGVLALQGAVR----------E-HARALEALGVEGVEVK-------RPEQLDEIDGLIIPGGESTTLSRLLDKYGMFEP 62 (184)
T ss_pred CEEEEEccCCHH----------H-HHHHHHHCCCEEEEEC-------ChHHhccCCEEEECCCCHHHHHHHHHhccHHHH
Confidence 588887655432 2 3478888999888775 234577899999999976654444455566777
Q ss_pred HHHHHhcCCcEEEEehHHHHHHHHc-----------CceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEe
Q 025645 88 LQTLDAMQKKVLGICFGHQVLCRAL-----------GGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIME 156 (250)
Q Consensus 88 i~~~~~~~~PilGIC~G~Qlla~a~-----------gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~ 156 (250)
|+++.+.++|++|||+|+|+|+.++ ++++.+++.+++.+...+.++.++. . .+.+...+
T Consensus 63 i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~~g~~~~s~~~~l~~~~~-----~-----~~~~~~~~ 132 (184)
T TIGR03800 63 LRNFILSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTVERNAYGRQVDSFEAEVDIKGV-----G-----DDPITGVF 132 (184)
T ss_pred HHHHHHcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEEEeeccCCccccEEEEeecccC-----C-----CCcceEEE
Confidence 8888889999999999999999997 2678887777778887777763211 1 12356678
Q ss_pred eecccccccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCH--HHHHHHH
Q 025645 157 CHRDEVWKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTK--DILYNLI 207 (250)
Q Consensus 157 ~H~~~v~~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~--~~~~~~~ 207 (250)
.|.+.|..+|++++++|.++++. .|++.+ ++||+|||||++. .+.+-|+
T Consensus 133 ~h~~~v~~lp~~~~vla~~~~~~-~a~~~~-~~~gvQfHPE~~~~~~~~~~f~ 183 (184)
T TIGR03800 133 IRAPKIVSVGNGVEILAKVGNRI-VAVRQG-NILVSSFHPELTDDHRVHEYFL 183 (184)
T ss_pred EcCCCcccCCCCeEEEEEeCCee-EEEEeC-CEEEEEeCCccCCCchHHHHhh
Confidence 99999999999999999988765 577755 7999999999775 3444443
No 54
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.95 E-value=4.6e-27 Score=205.07 Aligned_cols=170 Identities=22% Similarity=0.268 Sum_probs=127.5
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCC--CcCEEEEcCCCCCCCCCChhHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLH--KYDGFVISGSPYDAYGNDNWILKL 84 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~--~~dglIi~Gg~~~~~~~~~~~~~~ 84 (250)
.||+|++++.. ..+.++|.+.|..+.++.... . .+++. .+|||||+|||+++.+ ....
T Consensus 174 ~~i~viD~G~k------------~ni~~~L~~~G~~v~vvp~~~-~---~~~i~~~~pDGIiLSgGPgdp~~----~~~~ 233 (358)
T TIGR01368 174 KRVVVIDFGVK------------QNILRRLVKRGCEVTVVPYDT-D---AEEIKKYNPDGIFLSNGPGDPAA----VEPA 233 (358)
T ss_pred cEEEEEeCCcH------------HHHHHHHHHCCCEEEEEcCCC-C---HHHHHhhCCCEEEECCCCCCHHH----HHHH
Confidence 47899887532 346789999999988775332 1 11222 3599999999987632 3456
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc-
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW- 163 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~- 163 (250)
.++++++.+ ++|+||||+|||+|+.++||++.+.+.+.+...+++..... + ..+...++|+++|.
T Consensus 234 i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl~~gh~G~nhpV~~~~~--------~-----~v~itsqnH~~aV~~ 299 (358)
T TIGR01368 234 IETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKMKFGHRGGNHPVKDLIT--------G-----RVEITSQNHGYAVDP 299 (358)
T ss_pred HHHHHHHHc-CCCEEEECHHHHHHHHHhCCceeccCcCcCCCceeeEECCC--------C-----cEEEeecCCCcEEcc
Confidence 777888887 99999999999999999999999887766666666654311 1 23445678999995
Q ss_pred -ccC-CccEEEEEc-CCCceEEEEECC-cEEEEecCCCCC------HHHHHHHHHHH
Q 025645 164 -KVP-IGAEVIGFS-DKTGVEMFTIGD-HILGIQGHPEYT------KDILYNLIDRL 210 (250)
Q Consensus 164 -~lp-~~~~~la~s-~~~~v~~~~~~~-~~~g~QfHPE~~------~~~~~~~~~~~ 210 (250)
.+| +++++++.+ +++.++++++++ +++|+|||||.. ..+|++|++.+
T Consensus 300 ~~l~~~~l~vta~~~nDg~Vegi~h~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~ 356 (358)
T TIGR01368 300 DSLPAGDLEVTHVNLNDGTVEGIRHKDLPVFSVQYHPEASPGPHDTEYLFDEFIDLI 356 (358)
T ss_pred cccCCCceEEEEEECCCCcEEEEEECCCCEEEEEECCCCCCCCCChHHHHHHHHHHh
Confidence 356 689999987 578899999976 799999999953 45888888665
No 55
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.95 E-value=6.2e-27 Score=190.81 Aligned_cols=173 Identities=21% Similarity=0.221 Sum_probs=120.2
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHH--H-HH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWIL--K-LC 85 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~--~-~~ 85 (250)
|+|++.+... ..++.+.|++.|.++.+++ +++++.++|+||+||+.. ..+...+.. . ..
T Consensus 2 i~iid~g~~n----------~~~v~~~l~~~g~~~~~~~-------~~~~l~~~d~lilPG~g~-~~~~~~~l~~~~~~~ 63 (201)
T PRK13152 2 IALIDYKAGN----------LNSVAKAFEKIGAINFIAK-------NPKDLQKADKLLLPGVGS-FKEAMKNLKELGFIE 63 (201)
T ss_pred EEEEECCCCc----------HHHHHHHHHHCCCeEEEEC-------CHHHHcCCCEEEECCCCc-hHHHHHHHHHcCcHH
Confidence 7788776543 2446788888898877654 334567899999988653 212211111 1 23
Q ss_pred HHHHHHHhcCCcEEEEehHHHHHHHH------------cCceEEecC-----CCceeeEEEEEEecCCCCCCcccccCCC
Q 025645 86 FMLQTLDAMQKKVLGICFGHQVLCRA------------LGGKVGKAY-----TGWDIGLRRVRIVNDLAPCSFLEDLGEI 148 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Qlla~a------------~gg~v~~~~-----~~~~~g~~~i~~~~~~~~~~l~~~~~~l 148 (250)
.+.+.+.+.++|+||||+|||+|+.+ ++|+|.+.. ..++.||++|++.+ .+++|++ +
T Consensus 64 ~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~~v~~~~---~~~l~~~---l 137 (201)
T PRK13152 64 ALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEILK---QSPLYQG---I 137 (201)
T ss_pred HHHHHHHhCCCcEEEECHhHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeEEEEECC---CChhhhC---C
Confidence 34444567899999999999999987 126776643 13588999999864 5778888 7
Q ss_pred CCceEEEeeecccccccCCccEEEEEcCCCc--eEEEEECCcEEEEecCCCCC----HHHHHHHHH
Q 025645 149 PGSLSIMECHRDEVWKVPIGAEVIGFSDKTG--VEMFTIGDHILGIQGHPEYT----KDILYNLID 208 (250)
Q Consensus 149 ~~~~~~~~~H~~~v~~lp~~~~~la~s~~~~--v~~~~~~~~~~g~QfHPE~~----~~~~~~~~~ 208 (250)
++.+.++++|++.+..++ ..+.+.++++. +++++ +++++|+|||||.+ ..++++|++
T Consensus 138 ~~~~~~~~vHS~~v~~~~--~~v~a~~~~g~~~~~a~~-~~~i~GvQFHPE~~~~~g~~ll~~Fl~ 200 (201)
T PRK13152 138 PEKSDFYFVHSFYVKCKD--EFVSAKAQYGHKFVASLQ-KDNIFATQFHPEKSQNLGLKLLENFAR 200 (201)
T ss_pred CCCCeEEEEcccEeecCC--CcEEEEECCCCEEEEEEe-cCCEEEEeCCCeecChhhHHHHHHHHh
Confidence 888999999999986544 45666665543 44555 55899999999954 557777754
No 56
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.95 E-value=1.6e-26 Score=201.45 Aligned_cols=174 Identities=21% Similarity=0.226 Sum_probs=129.0
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
.++|++++++ +...+.+.|.+.|..+.+++...+ ..... -.++|||||+|||+++.+.. ...
T Consensus 167 ~~~V~viD~G------------~k~ni~~~L~~~G~~v~vvp~~~~-~~~i~-~~~~DGIiLsgGPgdp~~~~----~~~ 228 (354)
T PRK12838 167 GKHVALIDFG------------YKKSILRSLSKRGCKVTVLPYDTS-LEEIK-NLNPDGIVLSNGPGDPKELQ----PYL 228 (354)
T ss_pred CCEEEEECCC------------HHHHHHHHHHHCCCeEEEEECCCC-HHHHh-hcCCCEEEEcCCCCChHHhH----HHH
Confidence 4678888764 234578889999999888864321 11111 13689999999999875432 344
Q ss_pred HHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccc-
Q 025645 86 FMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWK- 164 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~- 164 (250)
++++.+.+. +|+||||+|||+|+.++||++.+++.+.+.+.+++..... . ..+.+.++|+++|..
T Consensus 229 ~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl~~gh~G~~hpV~~~~~---~----------~~~~ts~~H~~aV~~~ 294 (354)
T PRK12838 229 PEIKKLISS-YPILGICLGHQLIALALGADTEKLPFGHRGANHPVIDLTT---G----------RVWMTSQNHGYVVDED 294 (354)
T ss_pred HHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecCCCCccCCceEEEECCC---C----------eEEEeccchheEeccc
Confidence 566777665 9999999999999999999999988777788888876521 1 223456789999853
Q ss_pred -cCC-ccEEEEEc-CCCceEEEEECC-cEEEEecCCCC------CHHHHHHHHHHHh
Q 025645 165 -VPI-GAEVIGFS-DKTGVEMFTIGD-HILGIQGHPEY------TKDILYNLIDRLL 211 (250)
Q Consensus 165 -lp~-~~~~la~s-~~~~v~~~~~~~-~~~g~QfHPE~------~~~~~~~~~~~~~ 211 (250)
++. ++++.+.+ +++.++++++++ ++||+|||||. +..+|++|++.++
T Consensus 295 sl~~~~l~v~a~~~~Dg~Veai~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~~ 351 (354)
T PRK12838 295 SLDGTPLSVRFFNVNDGSIEGLRHKKKPVLSVQFHPEAHPGPHDAEYIFDEFLEMME 351 (354)
T ss_pred ccCCCCcEEEEEECCCCeEEEEEECCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHH
Confidence 564 48888875 577799999976 69999999994 3468889887763
No 57
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.95 E-value=1.4e-26 Score=192.19 Aligned_cols=178 Identities=19% Similarity=0.167 Sum_probs=131.0
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC---CCCCCcCEEEEcCCCCCCCCCChhHHHH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF---NDLHKYDGFVISGSPYDAYGNDNWILKL 84 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~---~~l~~~dglIi~Gg~~~~~~~~~~~~~~ 84 (250)
+||++..-. ...++|.++...+..+..+.+.++.+.++...+.... +.+.++||||++||+.... ....
T Consensus 2 ~i~lvg~~~---~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~~-----~~~~ 73 (235)
T cd01746 2 RIALVGKYV---ELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIRG-----VEGK 73 (235)
T ss_pred EEEEEECCc---CCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCcc-----hhhH
Confidence 688886443 3467788888888888888888888877665443222 4678899999999986543 3456
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCc-----------------------------eeeEEEEEEecC
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGW-----------------------------DIGLRRVRIVND 135 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~-----------------------------~~g~~~i~~~~~ 135 (250)
..+++.+.+.++|+||||+|||+|+.++||++.+.+... +.+.+.+.+.++
T Consensus 74 ~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~~ 153 (235)
T cd01746 74 ILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKPG 153 (235)
T ss_pred HHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEECCC
Confidence 678888999999999999999999999999876553221 112466666632
Q ss_pred CCCCCcccccCCCC-CceEEEeeeccccc-----c-cCCccEEEEEcC-CCceEEEEECC-cE-EEEecCCCCC
Q 025645 136 LAPCSFLEDLGEIP-GSLSIMECHRDEVW-----K-VPIGAEVIGFSD-KTGVEMFTIGD-HI-LGIQGHPEYT 199 (250)
Q Consensus 136 ~~~~~l~~~~~~l~-~~~~~~~~H~~~v~-----~-lp~~~~~la~s~-~~~v~~~~~~~-~~-~g~QfHPE~~ 199 (250)
+.+ ..+ ++ +...+.+.|+++|. . +.++++++|.+. ++.+++++.++ ++ +|+|||||+.
T Consensus 154 ---s~l-~~~--~g~~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~~ 221 (235)
T cd01746 154 ---TLA-HKY--YGKDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFK 221 (235)
T ss_pred ---ChH-HHH--hCCCEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCCc
Confidence 232 221 33 34678899999874 2 378999999998 78899999875 54 5999999963
No 58
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.95 E-value=3.7e-26 Score=216.43 Aligned_cols=185 Identities=14% Similarity=0.126 Sum_probs=131.2
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcC-C--CceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChh
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEE-G--ERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~-g--~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
+..+||+||+. |++|+.++++.|++. | .++.+++...........+.++|+|||+|||+++.+..
T Consensus 3 ~~~~~iL~ID~----------~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~-- 70 (742)
T TIGR01823 3 QQRLHVLFIDS----------YDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQ-- 70 (742)
T ss_pred CCCceEEEEeC----------CcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchh--
Confidence 34578888864 335788888888886 4 44455543321111112356899999999999885322
Q ss_pred HHHHHHHHHHHHhc----CCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEe
Q 025645 81 ILKLCFMLQTLDAM----QKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIME 156 (250)
Q Consensus 81 ~~~~~~~i~~~~~~----~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~ 156 (250)
...+++++.+. ++||||||+|||+|+.++||+|.+.+.+.+.....+... ..++|.+ ++. +.+++
T Consensus 71 ---~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~~~hG~~~~v~~~----~~~lf~g---l~~-~~v~~ 139 (742)
T TIGR01823 71 ---DMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTPKHGQVYEMHTN----DAAIFCG---LFS-VKSTR 139 (742)
T ss_pred ---hhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECCCCCcCeEEEEEEC----CccccCC---CCC-CceeE
Confidence 12233444333 599999999999999999999999887655556677664 4568888 664 88999
Q ss_pred eecccccc-cCCc--cEEEEEcCCC-ceEEEEECC-cEEEEecCCCC-----C-HHHHHHHHHHHh
Q 025645 157 CHRDEVWK-VPIG--AEVIGFSDKT-GVEMFTIGD-HILGIQGHPEY-----T-KDILYNLIDRLL 211 (250)
Q Consensus 157 ~H~~~v~~-lp~~--~~~la~s~~~-~v~~~~~~~-~~~g~QfHPE~-----~-~~~~~~~~~~~~ 211 (250)
+|++.+.. .++. +.+++.+.++ .++++++.+ ++||+|||||. + ..++++|++...
T Consensus 140 ~Hs~~v~~~~~~~l~~~~~a~~~~~~~i~ai~h~~~pi~GVQFHPE~~~s~~g~~~Lf~nFl~~~~ 205 (742)
T TIGR01823 140 YHSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKKKPWFGVQYHPESCCSELGSGKLVSNFLKLAF 205 (742)
T ss_pred EEEEEccCCCCCcceEEEEEEcCCCCeEEEEEEcCCceEEEEeCcccCCCCccHHHHHHHHHHHHH
Confidence 99999854 4444 5666766655 488999866 79999999995 3 789999997643
No 59
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.94 E-value=2e-26 Score=186.39 Aligned_cols=175 Identities=22% Similarity=0.293 Sum_probs=123.4
Q ss_pred HHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCC---CCCCCC----------hhHHHHHHHHHHHHhcCCc
Q 025645 31 VFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPY---DAYGND----------NWILKLCFMLQTLDAMQKK 97 (250)
Q Consensus 31 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~---~~~~~~----------~~~~~~~~~i~~~~~~~~P 97 (250)
.|.+....+|.-...+....+.......++..||||+|||.. ..|... ....-++.+|+.++++++|
T Consensus 30 ~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iP 109 (243)
T COG2071 30 DYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIP 109 (243)
T ss_pred HHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCC
Confidence 345555556654444432211111122356789999999932 012111 1234478899999999999
Q ss_pred EEEEehHHHHHHHHcCceEEecC------------CCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccccc
Q 025645 98 VLGICFGHQVLCRALGGKVGKAY------------TGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKV 165 (250)
Q Consensus 98 ilGIC~G~Qlla~a~gg~v~~~~------------~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~l 165 (250)
|||||.|+|+|+.++||++.+.- .......++|.+.+++.-..+|+. ..+.+..+|++++.++
T Consensus 110 ILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~~s~La~i~g~-----~~~~VNS~HhQaIk~L 184 (243)
T COG2071 110 ILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKILGE-----SEFMVNSFHHQAIKKL 184 (243)
T ss_pred EEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeEEEecCCccHHHhcCc-----cceeecchHHHHHHHh
Confidence 99999999999999999876532 223455788888865333334332 1289999999999999
Q ss_pred CCccEEEEEcCCCceEEEEECC--cEEEEecCCCCC-------HHHHHHHHHHH
Q 025645 166 PIGAEVIGFSDKTGVEMFTIGD--HILGIQGHPEYT-------KDILYNLIDRL 210 (250)
Q Consensus 166 p~~~~~la~s~~~~v~~~~~~~--~~~g~QfHPE~~-------~~~~~~~~~~~ 210 (250)
.+++++.|.++|+.|+|++.++ .++|+|||||+. ..+|+.|.+..
T Consensus 185 a~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~ 238 (243)
T COG2071 185 APGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNAC 238 (243)
T ss_pred CCCcEEEEECCCCcEEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHH
Confidence 9999999999999999999875 599999999943 45677666554
No 60
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.94 E-value=1.9e-26 Score=202.68 Aligned_cols=160 Identities=23% Similarity=0.255 Sum_probs=121.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCC-CCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFND-LHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
.||++++++.. ..+.+.|.+.|.++.++.... +..+. ..++|||||+|||+++.+. + ...
T Consensus 241 ~~IvviD~G~K------------~nIlr~L~~~G~~v~VvP~~~---~~~ei~~~~pDGIiLSnGPGDP~~~-~---~~i 301 (415)
T PLN02771 241 YHVIAYDFGIK------------HNILRRLASYGCKITVVPSTW---PASEALKMKPDGVLFSNGPGDPSAV-P---YAV 301 (415)
T ss_pred CEEEEECCChH------------HHHHHHHHHcCCeEEEECCCC---CHHHHhhcCCCEEEEcCCCCChhHh-h---HHH
Confidence 47888876652 347789999999988775322 21111 1368999999999987432 2 234
Q ss_pred HHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccc--c
Q 025645 86 FMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEV--W 163 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v--~ 163 (250)
+.++++. .++||||||+|||+|+.++||++.+++.+++.+.++|..... + ....+.++|++.| .
T Consensus 302 e~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~K~~~Gh~G~n~pV~~~~~--------~-----~v~itsqnHg~aVd~~ 367 (415)
T PLN02771 302 ETVKELL-GKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNNRT--------G-----RVEISAQNHNYAVDPA 367 (415)
T ss_pred HHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEEECCCCcccceEEEEECCC--------C-----CEEEEecCHHHhhccc
Confidence 4555554 379999999999999999999999999888888888765421 1 1234678999999 5
Q ss_pred ccCCccEEEEEc-CCCceEEEEECC-cEEEEecCCCCC
Q 025645 164 KVPIGAEVIGFS-DKTGVEMFTIGD-HILGIQGHPEYT 199 (250)
Q Consensus 164 ~lp~~~~~la~s-~~~~v~~~~~~~-~~~g~QfHPE~~ 199 (250)
.+|+++++++.+ +|+.++++++++ +++|+|||||..
T Consensus 368 sLp~~~~vt~~nlnDgtvegi~~~~~pi~gVQFHPEa~ 405 (415)
T PLN02771 368 SLPEGVEVTHVNLNDGSCAGLAFPALNVMSLQYHPEAS 405 (415)
T ss_pred cCCCceEEEEEeCCCCcEEEEEECCCCEEEEEcCCCCC
Confidence 799999999987 678899999976 899999999954
No 61
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.94 E-value=7.4e-26 Score=198.45 Aligned_cols=171 Identities=17% Similarity=0.146 Sum_probs=121.6
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
.+||+|++++. ...+.++|++.|+++.+++...+ .... ...++|||||+|||+++.+.. ...
T Consensus 192 ~~~I~viD~g~------------k~ni~~~L~~~G~~v~vvp~~~~-~~~i-~~~~~dgIilSgGPg~p~~~~----~~i 253 (382)
T CHL00197 192 QLKIIVIDFGV------------KYNILRRLKSFGCSITVVPATSP-YQDI-LSYQPDGILLSNGPGDPSAIH----YGI 253 (382)
T ss_pred CCEEEEEECCc------------HHHHHHHHHHCCCeEEEEcCCCC-HHHH-hccCCCEEEEcCCCCChhHHH----HHH
Confidence 46899998742 23478899999999888754322 1111 123689999999999875433 334
Q ss_pred HHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCce-EEEeeeccccc-
Q 025645 86 FMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSL-SIMECHRDEVW- 163 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~-~~~~~H~~~v~- 163 (250)
+.++++.+.++|+||||+|||+|+.++||++.+++.+.+.+.+++.++ ..+ ...++|++.+.
T Consensus 254 ~~i~~~~~~~~PilGIClGhQlLa~a~Gg~v~k~~~Gh~g~n~pv~~~----------------~~v~itsq~H~~~v~~ 317 (382)
T CHL00197 254 KTVKKLLKYNIPIFGICMGHQILSLALEAKTFKLKFGHRGLNHPSGLN----------------QQVEITSQNHGFAVNL 317 (382)
T ss_pred HHHHHHHhCCCCEEEEcHHHHHHHHHhCCEEeccCCCCCCCCEecCCC----------------CceEEeecchheEeec
Confidence 555666667899999999999999999999999887655544444321 122 23467888773
Q ss_pred -ccCC-ccEEEEEc-CCCceEEEEECC-cEEEEecCCCCC------HHHHHHHHHHH
Q 025645 164 -KVPI-GAEVIGFS-DKTGVEMFTIGD-HILGIQGHPEYT------KDILYNLIDRL 210 (250)
Q Consensus 164 -~lp~-~~~~la~s-~~~~v~~~~~~~-~~~g~QfHPE~~------~~~~~~~~~~~ 210 (250)
.++. ++.+++.+ +++.++++++++ ++||+|||||.. ..++++|++.+
T Consensus 318 ~sv~~~~~~vt~~~~nDgtvegi~h~~~pi~gVQFHPE~~~gp~d~~~lf~~Fv~~~ 374 (382)
T CHL00197 318 ESLAKNKFYITHFNLNDGTVAGISHSPKPYFSVQYHPEASPGPHDADYLFEYFIEII 374 (382)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEECCCCcEEEeeCCCCCCCCCCHHHHHHHHHHHH
Confidence 4564 68888775 577799999976 799999999953 24788887765
No 62
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.94 E-value=1.2e-26 Score=190.92 Aligned_cols=162 Identities=27% Similarity=0.344 Sum_probs=110.2
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCC----CCC-----Chh-----HHHHHHHHHHHHhcC
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDA----YGN-----DNW-----ILKLCFMLQTLDAMQ 95 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~----~~~-----~~~-----~~~~~~~i~~~~~~~ 95 (250)
..|+++++++|....++.+..+...-...++.+||||+|||..+. |.+ ..+ ..-...+++.+.+.+
T Consensus 27 ~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~ 106 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRG 106 (217)
T ss_dssp HHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcC
Confidence 568899999999988887553211112235789999999998533 211 111 122466777888889
Q ss_pred CcEEEEehHHHHHHHHcCceEEecCCC-----------ceeeEEEEEEecCCCCCCcccccCCCC-CceEEEeeeccccc
Q 025645 96 KKVLGICFGHQVLCRALGGKVGKAYTG-----------WDIGLRRVRIVNDLAPCSFLEDLGEIP-GSLSIMECHRDEVW 163 (250)
Q Consensus 96 ~PilGIC~G~Qlla~a~gg~v~~~~~~-----------~~~g~~~i~~~~~~~~~~l~~~~~~l~-~~~~~~~~H~~~v~ 163 (250)
+||||||.|||+|+.++||++...-.. .....+.+.+.++ .++..+ ++ +.+.++.+|+++|.
T Consensus 107 ~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~~~----s~l~~~--~~~~~~~vns~Hhq~v~ 180 (217)
T PF07722_consen 107 KPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIVPG----SLLAKI--LGSEEIEVNSFHHQAVK 180 (217)
T ss_dssp --EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEETT----STCCCT--SHHCTEEEEEEECEEEC
T ss_pred CCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceeccC----chHHHH--hCcCcceeecchhhhhh
Confidence 999999999999999999988654321 1245677878743 333332 22 67899999999999
Q ss_pred ccCCccEEEEEcCCCceEEEEECC---cEEEEecCCC
Q 025645 164 KVPIGAEVIGFSDKTGVEMFTIGD---HILGIQGHPE 197 (250)
Q Consensus 164 ~lp~~~~~la~s~~~~v~~~~~~~---~~~g~QfHPE 197 (250)
.+.++++++|.+.++.++|++..+ +++|+|||||
T Consensus 181 ~l~~~l~v~A~s~Dg~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 181 PLGEGLRVTARSPDGVIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp CHHCCEEEEEEECTSSEEEEEECCESS-EEEESS-CC
T ss_pred ccCCCceEEEEecCCcEEEEEEcCCCCCEEEEEeCCC
Confidence 999999999999999999999865 6999999999
No 63
>PRK06186 hypothetical protein; Validated
Probab=99.93 E-value=3.5e-25 Score=180.97 Aligned_cols=191 Identities=14% Similarity=-0.002 Sum_probs=131.3
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
.+||++.--.. +.++|.+....+..+-...+.++++.|+...++.....|+++|||++|||.+... +.+...
T Consensus 2 v~IalVGKY~~---~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~rg-----~~Gki~ 73 (229)
T PRK06186 2 LRIALVGDYNP---DVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYRN-----DDGALT 73 (229)
T ss_pred cEEEEEECCcC---CcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCccc-----HhHHHH
Confidence 58898864332 3456666666666666667888999998887765545789999999999976543 567888
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHHcCceEEecC---------CC-----------ceeeEEEEEEecCCCCCCcccccC
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAY---------TG-----------WDIGLRRVRIVNDLAPCSFLEDLG 146 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~---------~~-----------~~~g~~~i~~~~~~~~~~l~~~~~ 146 (250)
.++++++.++|+||||+|||++...+..++...+ .. .....+++.+.+++....+++.
T Consensus 74 ai~~Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~~~~~~~h~v~l~~~S~l~~iyg~-- 151 (229)
T PRK06186 74 AIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSCSLVEKTGDIRLRPGSLIARAYGT-- 151 (229)
T ss_pred HHHHHHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECccccccCceEEEECCCCHHHHHhCC--
Confidence 9999999999999999999986655443332111 00 0112367777643222223322
Q ss_pred CCCCceEEEeeecccccc------cCCccEEEEEcCCCceEEEEECC--cEEEEecCCCCC------HHHHHHHHHHH
Q 025645 147 EIPGSLSIMECHRDEVWK------VPIGAEVIGFSDKTGVEMFTIGD--HILGIQGHPEYT------KDILYNLIDRL 210 (250)
Q Consensus 147 ~l~~~~~~~~~H~~~v~~------lp~~~~~la~s~~~~v~~~~~~~--~~~g~QfHPE~~------~~~~~~~~~~~ 210 (250)
+.+...+.|.|.|.+ ..+++++.|.++++.+++++.++ .++|+|||||+. ..+|..|++..
T Consensus 152 ---~~i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~LF~~Fv~aa 226 (229)
T PRK06186 152 ---LEIEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGDVRAVELPGHPFFVATLFQPERAALAGRPPPLVRAFLRAA 226 (229)
T ss_pred ---CeeeeeccccEEECHHHHHHHhcCCeEEEEEcCCCCEEEEEeCCCCcEEEEeCCCCccCCCCCCCHHHHHHHHHH
Confidence 334444555555531 37899999999999999999875 389999999964 35777777654
No 64
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.93 E-value=6e-25 Score=186.37 Aligned_cols=174 Identities=20% Similarity=0.184 Sum_probs=132.5
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCC-CCCcCEEEEcCCCCCCCCCChhHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFND-LHKYDGFVISGSPYDAYGNDNWILKL 84 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-l~~~dglIi~Gg~~~~~~~~~~~~~~ 84 (250)
.++|++++++... .+.+.|.+.|+++.++.... ...+. -.++|||+||-||+++.. ....
T Consensus 179 ~~~Vv~iD~GvK~------------nIlr~L~~rg~~vtVVP~~t---~~eeIl~~~pDGiflSNGPGDP~~----~~~~ 239 (368)
T COG0505 179 GKHVVVIDFGVKR------------NILRELVKRGCRVTVVPADT---SAEEILALNPDGIFLSNGPGDPAP----LDYA 239 (368)
T ss_pred CcEEEEEEcCccH------------HHHHHHHHCCCeEEEEcCCC---CHHHHHhhCCCEEEEeCCCCChhH----HHHH
Confidence 4688999887653 25678888899998875332 11111 147899999999999832 3566
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc-
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW- 163 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~- 163 (250)
.+.++.+++..+|++|||+|||+|+.|+|++..+++.+.+.+.++++-.. . .......+.|+++|.
T Consensus 240 i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~KmkFGHrG~NhPV~dl~--------t-----grv~ITSQNHGyaVd~ 306 (368)
T COG0505 240 IETIKELLGTKIPIFGICLGHQLLALALGAKTYKMKFGHRGANHPVKDLD--------T-----GRVYITSQNHGYAVDE 306 (368)
T ss_pred HHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeecccCCCCCCcCccccc--------C-----CeEEEEecCCceecCh
Confidence 77888888888899999999999999999999999999888888875331 1 134567799999996
Q ss_pred -ccCCccEEEEEc-CCCceEEEEECC-cEEEEecCCCCC------HHHHHHHHHHHh
Q 025645 164 -KVPIGAEVIGFS-DKTGVEMFTIGD-HILGIQGHPEYT------KDILYNLIDRLL 211 (250)
Q Consensus 164 -~lp~~~~~la~s-~~~~v~~~~~~~-~~~g~QfHPE~~------~~~~~~~~~~~~ 211 (250)
++++..+++..+ .|+.++++++++ |++++|||||.+ .-+|..|++.+.
T Consensus 307 ~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSVQ~HPEAsPGPhDt~ylFd~Fi~~~~ 363 (368)
T COG0505 307 DSLVETLKVTHVNLNDGTVEGIRHKDLPAFSVQYHPEASPGPHDTRYLFDEFIELME 363 (368)
T ss_pred hhcCCCceeEEEeCCCCCccceecCCCceEEEccCCCCCCCCcccHHHHHHHHHHHH
Confidence 355443566666 567799999987 899999999943 568999988764
No 65
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.93 E-value=2.1e-24 Score=197.28 Aligned_cols=181 Identities=17% Similarity=0.197 Sum_probs=131.5
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHH--H
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWIL--K 83 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~--~ 83 (250)
.++|+|++++...- ..+.++|++.|+++.+++ ++.++.++|+||+||+... ....++.. .
T Consensus 6 ~~~i~iiDyG~GN~----------~sl~~al~~~G~~v~~v~-------~~~~l~~~D~lIlpG~gs~-~~~m~~L~~~g 67 (538)
T PLN02617 6 DSEVTLLDYGAGNV----------RSVRNAIRHLGFTIKDVQ-------TPEDILNADRLIFPGVGAF-GSAMDVLNNRG 67 (538)
T ss_pred CCeEEEEECCCCCH----------HHHHHHHHHCCCeEEEEC-------ChhhhccCCEEEECCCCCH-HHHHHHHHHcC
Confidence 46899999887642 346788999999886664 2345788999999986432 12223332 2
Q ss_pred HHHHHHHHHhcCCcEEEEehHHHHHHHHc---------C---ceEEecC-----CCceeeEEEEEEecCCCCCCcccccC
Q 025645 84 LCFMLQTLDAMQKKVLGICFGHQVLCRAL---------G---GKVGKAY-----TGWDIGLRRVRIVNDLAPCSFLEDLG 146 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G~Qlla~a~---------g---g~v~~~~-----~~~~~g~~~i~~~~~~~~~~l~~~~~ 146 (250)
+.+.++.+.+.++|+||||+|||+|+.++ | |.+.+.+ ..+++||+.+.... .+++|.+
T Consensus 68 l~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~~~---~spL~~~-- 142 (538)
T PLN02617 68 MAEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQITK---DSELLDG-- 142 (538)
T ss_pred HHHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEecC---CChhHhc--
Confidence 56677888888999999999999999873 3 6666542 23689999998764 5788887
Q ss_pred CCCCceEEEeeecccccccCCccE-EEEEcC--CCceEEEEECCcEEEEecCCCCC----HHHHHHHHHHHhc
Q 025645 147 EIPGSLSIMECHRDEVWKVPIGAE-VIGFSD--KTGVEMFTIGDHILGIQGHPEYT----KDILYNLIDRLLN 212 (250)
Q Consensus 147 ~l~~~~~~~~~H~~~v~~lp~~~~-~la~s~--~~~v~~~~~~~~~~g~QfHPE~~----~~~~~~~~~~~~~ 212 (250)
++ ...++++|+|.+..+|.+.. +++.++ ++.+++++++ ++||+|||||.+ ..++++|++...+
T Consensus 143 -l~-~~~vy~vHSy~v~~~p~~~~~v~a~~~~g~~~IaAI~~g-nI~GVQFHPE~s~~~G~~L~~nFl~~~~~ 212 (538)
T PLN02617 143 -VG-GRHVYFVHSYRATPSDENKDWVLATCNYGGEFIASVRKG-NVHAVQFHPEKSGATGLSILRRFLEPKSS 212 (538)
T ss_pred -CC-CcEEEEEeEEEEEecCCCCcEEEEEEccCCCcEEEEEeC-CEEEEEcCCccCchhHHHHHHHHHHhhhh
Confidence 64 46789999999866665544 344443 3357888875 799999999965 4789999887654
No 66
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.91 E-value=2.5e-24 Score=186.07 Aligned_cols=194 Identities=23% Similarity=0.308 Sum_probs=144.0
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCC-CCcCEEEEcCCCCCCCCCC-hhHH
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDL-HKYDGFVISGSPYDAYGND-NWIL 82 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l-~~~dglIi~Gg~~~~~~~~-~~~~ 82 (250)
..-+|+||+.+. .|...+.+.+++..+..+++.... +..... .++-||||+|||.|+|+++ ||.+
T Consensus 15 ~~d~i~iLD~Ga----------QY~~~I~RrvRel~v~se~~p~~t---~~~~i~~~~~rgiIiSGGP~SVya~dAP~~d 81 (552)
T KOG1622|consen 15 YFDTILILDFGA----------QYGKVIDRRVRELNVQSEILPLTT---PAKTITEYGPRGIIISGGPNSVYAEDAPSFD 81 (552)
T ss_pred cCceEEEEeccc----------hhhHHHHHHHHHHhhhhhhccCCC---hhhhhhcCCceEEEEeCCCCccccCcCCCCC
Confidence 344788987654 355666778888777666554322 111111 5789999999999998764 6654
Q ss_pred HHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceE--EEeeecc
Q 025645 83 KLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLS--IMECHRD 160 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~--~~~~H~~ 160 (250)
. ...+.++|+||||+|||+|+..+||.|.+... .+.|..+|...+ ...+|++ +.+... ++..|+|
T Consensus 82 p------~if~~~vpvLGICYGmQ~i~~~~Gg~V~~~~~-RE~G~~eI~v~~---~~~lF~~---~~~~~~~~VlltHgd 148 (552)
T KOG1622|consen 82 P------AIFELGVPVLGICYGMQLINKLNGGTVVKGMV-REDGEDEIEVDD---SVDLFSG---LHKTEFMTVLLTHGD 148 (552)
T ss_pred h------hHhccCCcceeehhHHHHHHHHhCCccccccc-cCCCCceEEcCc---hhhhhhh---hcccceeeeeecccc
Confidence 4 23355899999999999999999999987654 678999998874 4568888 444444 8999999
Q ss_pred cccccCCccEEEEEcCCCceEEEEECC-cEEEEecCCCCC-----HHHHHHHHHHHh--cCCCccHHHHHHH
Q 025645 161 EVWKVPIGAEVIGFSDKTGVEMFTIGD-HILGIQGHPEYT-----KDILYNLIDRLL--NNNSIEREFAENA 224 (250)
Q Consensus 161 ~v~~lp~~~~~la~s~~~~v~~~~~~~-~~~g~QfHPE~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~ 224 (250)
.+..+|.++++.|.|.+.++.++.+.. ++||+|||||.+ .+++++|+=.+. ...|.++.+.++.
T Consensus 149 sl~~v~~g~kv~a~s~n~~va~i~~e~kkiyglqfhpEV~~t~~g~~ll~nFl~~vc~~~~n~tmenre~e~ 220 (552)
T KOG1622|consen 149 SLSKVPEGFKVVAFSGNKPVAGILNELKKIYGLQFHPEVTLTPNGKELLKNFLFDVCGCSGNFTMENREEEC 220 (552)
T ss_pred chhhccccceeEEeecCcceeeehhhhhhhhcCCCCCcccccCchhHHHHHHHHHHcCCccCcchhhhhHHH
Confidence 999999999999999988888888764 799999999954 678999984443 2444455444444
No 67
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.91 E-value=1.1e-23 Score=168.78 Aligned_cols=165 Identities=17% Similarity=0.180 Sum_probs=106.8
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHH--HHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILK--LCF 86 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~--~~~ 86 (250)
|+|++.+... + ....++|++.|+++.+++ +++++.++|+||+||+..-. ++..++.+ +.+
T Consensus 2 i~iidyg~gN---------~-~s~~~al~~~g~~~~~v~-------~~~~l~~~D~lIlPG~g~~~-~~~~~L~~~gl~~ 63 (192)
T PRK13142 2 IVIVDYGLGN---------I-SNVKRAIEHLGYEVVVSN-------TSKIIDQAETIILPGVGHFK-DAMSEIKRLNLNA 63 (192)
T ss_pred EEEEEcCCcc---------H-HHHHHHHHHcCCCEEEEe-------CHHHhccCCEEEECCCCCHH-HHHHHHHHCCcHH
Confidence 7888776543 2 346788999999888765 34567889999999974311 22222222 455
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHHc--C---------ceEEecCC---CceeeEEEEEEecCCCCCCcccccCCCCCce
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRAL--G---------GKVGKAYT---GWDIGLRRVRIVNDLAPCSFLEDLGEIPGSL 152 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a~--g---------g~v~~~~~---~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~ 152 (250)
.|++ ..++|+||||+|||+|+... | ++|.|.+. -+++||+.+.. ..++|+ .
T Consensus 64 ~i~~--~~g~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~~~~~vph~GWn~~~~-----~~~l~~--------~ 128 (192)
T PRK13142 64 ILAK--NTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNLVS-----KHPMLN--------Q 128 (192)
T ss_pred HHHH--hCCCeEEEECHHHHHHhhhcccCCcCccCceeEEEEECCCCCCCCcccccccCC-----CCcccc--------c
Confidence 5655 45899999999999999865 2 34555432 24666666532 123332 3
Q ss_pred EEEeeecccccccCCccEEEEEcCCCceEEEEECCcEEEEecCCCC----CHHHHHHHHH
Q 025645 153 SIMECHRDEVWKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEY----TKDILYNLID 208 (250)
Q Consensus 153 ~~~~~H~~~v~~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~----~~~~~~~~~~ 208 (250)
.+|+.|++.+. .++....++.. +.++.+...+++++|+|||||. +.+++++|++
T Consensus 129 ~~yFVhSy~v~-~~~~v~~~~~y-g~~~~~~v~~~n~~g~QFHPEkS~~~G~~ll~nf~~ 186 (192)
T PRK13142 129 DVYFVHSYQAP-MSENVIAYAQY-GADIPAIVQFNNYIGIQFHPEKSGTYGLQILRQAIQ 186 (192)
T ss_pred EEEEECCCeEC-CCCCEEEEEEC-CCeEEEEEEcCCEEEEecCcccCcHhHHHHHHHHHh
Confidence 68999999983 33434344433 2224444456789999999994 5678888865
No 68
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.91 E-value=1e-23 Score=159.87 Aligned_cols=177 Identities=21% Similarity=0.276 Sum_probs=134.8
Q ss_pred hhCCHHHHHHHHH-hcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 24 VYGGYFNVFVAAF-GEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 24 ~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
+|++|+..+++.| .+.|..+.+++-++-..+..+ -.+.++++|+.||+.+.|.. + ..+.++++ ...+|+||||
T Consensus 26 NYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~-~~NP~~LliSPGPG~P~DsG--I--s~~~i~~f-~~~iP~fGvC 99 (223)
T KOG0026|consen 26 NYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELK-RKNPRGLLISPGPGTPQDSG--I--SLQTVLEL-GPLVPLFGVC 99 (223)
T ss_pred cccchhHHHHHHhhhccCccEEEEecCcccHHHHh-hcCCCeEEecCCCCCCcccc--c--hHHHHHHh-CCCCceeeee
Confidence 4556777777777 777899888875443333322 24689999999999886432 1 12334443 3579999999
Q ss_pred hHHHHHHHHcCceEEecCC-CceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc--ccC-CccEEEEEcCCC
Q 025645 103 FGHQVLCRALGGKVGKAYT-GWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW--KVP-IGAEVIGFSDKT 178 (250)
Q Consensus 103 ~G~Qlla~a~gg~v~~~~~-~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~--~lp-~~~~~la~s~~~ 178 (250)
.|.|.|..++||+|.+.+. ..+.....|..... ....+|++ +|+.+.+..+|+.... ++| +.++++|..+++
T Consensus 100 MGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~~-~~~G~f~g---~~q~~~V~RYHSLa~~~sSlP~d~L~VTawTEnG 175 (223)
T KOG0026|consen 100 MGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEK-GEEGLFSG---LSNPFIVGRYHSLVIEKDSFPSDELEVTAWTEDG 175 (223)
T ss_pred hhhhhhhhhhCcEEeccCcceeeccccccccCCc-cccccccC---CCCCeEEEeeeeeeeecccCCccceeeeEeccCc
Confidence 9999999999999998873 23445566666543 24678998 8999999999998874 588 779999999999
Q ss_pred ceEEEEECC--cEEEEecCCC-----CCHHHHHHHHHHH
Q 025645 179 GVEMFTIGD--HILGIQGHPE-----YTKDILYNLIDRL 210 (250)
Q Consensus 179 ~v~~~~~~~--~~~g~QfHPE-----~~~~~~~~~~~~~ 210 (250)
.+++.+++. ++-|+||||| .+..+++||+...
T Consensus 176 ~iMgaRHkKY~~ieGVQfHPESIlteeGk~~irNflni~ 214 (223)
T KOG0026|consen 176 LVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIV 214 (223)
T ss_pred EEEeeeccccccccceeecchhhhhhhhHHHHHHHHHhc
Confidence 999999875 5999999999 6788999999765
No 69
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.90 E-value=6.3e-23 Score=184.79 Aligned_cols=192 Identities=18% Similarity=0.206 Sum_probs=131.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CCCCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FNDLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
..+||++.--.. +.++|.+....+..+-...+.++.+.|+...+... .+.++++||||+|||++... ..
T Consensus 288 ~v~IalVGKY~~---l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~~-----~~ 359 (533)
T PRK05380 288 EVTIALVGKYVE---LPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERG-----IE 359 (533)
T ss_pred ceEEEEEeCccC---CcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCccc-----cc
Confidence 468999864332 34567666666666666677888888887665443 35688999999999976532 33
Q ss_pred HHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCC-----------------------------ceeeEEEEEEe
Q 025645 83 KLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTG-----------------------------WDIGLRRVRIV 133 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~-----------------------------~~~g~~~i~~~ 133 (250)
...++++.+.+.++|+||||+|||+++.++||++...... .+.|.+++.+.
T Consensus 360 g~i~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~ 439 (533)
T PRK05380 360 GKILAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLK 439 (533)
T ss_pred cHHHHHHHHHHCCCcEEEEchHHHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEEC
Confidence 5677889999999999999999999999999987321100 12345677776
Q ss_pred cCCCCCCcccccCCCCCceEEEeeecccccc-----c-CCccEEEEEcCC-CceEEEEECC-c-EEEEecCCCCC-----
Q 025645 134 NDLAPCSFLEDLGEIPGSLSIMECHRDEVWK-----V-PIGAEVIGFSDK-TGVEMFTIGD-H-ILGIQGHPEYT----- 199 (250)
Q Consensus 134 ~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~-----l-p~~~~~la~s~~-~~v~~~~~~~-~-~~g~QfHPE~~----- 199 (250)
+++....+++. ..+...+.|.+.|.+ + ..++++.|.+++ +.+++++.++ + ++|+|||||+.
T Consensus 440 ~gS~l~~iyg~-----~~i~ErhrHryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~ 514 (533)
T PRK05380 440 PGTLAAEIYGK-----EEIYERHRHRYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRR 514 (533)
T ss_pred CCChHHHHhCC-----CceeeecccceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCc
Confidence 43222222322 334444556655532 1 348999999976 4799999876 4 66999999964
Q ss_pred -HHHHHHHHHHH
Q 025645 200 -KDILYNLIDRL 210 (250)
Q Consensus 200 -~~~~~~~~~~~ 210 (250)
..+|..|++..
T Consensus 515 ~~pLF~~FV~Aa 526 (533)
T PRK05380 515 PHPLFAGFVKAA 526 (533)
T ss_pred hHHHHHHHHHHH
Confidence 35777777654
No 70
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.90 E-value=5.9e-23 Score=184.95 Aligned_cols=186 Identities=18% Similarity=0.206 Sum_probs=123.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCC----ceEEEEeecCCCCCC--CCCCCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGE----RWDLFRVVEGDFPDF--NDLHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----~~~~~~~~~~~~~~~--~~l~~~dglIi~Gg~~~~~~~~~ 79 (250)
..+||++.--.. +.++|.+ +.++|..+|. .+.+.++...+.... +.|+++||||+|||+++...
T Consensus 289 ~v~IalVGKY~~---~~daY~S----I~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~~--- 358 (525)
T TIGR00337 289 EVTIGIVGKYVE---LKDSYLS----VIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERGV--- 358 (525)
T ss_pred CcEEEEEeCCcC---CHHHHHH----HHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChhh---
Confidence 468999864333 3445544 4556665554 566666655443221 23778999999999977542
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCC-----------------------------ceeeEEEE
Q 025645 80 WILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTG-----------------------------WDIGLRRV 130 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~-----------------------------~~~g~~~i 130 (250)
....+.++.+.+.++|+||||+|||+++.++|+++...+.. .+.|.+++
T Consensus 359 --~g~i~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v 436 (525)
T TIGR00337 359 --EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPC 436 (525)
T ss_pred --cChHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEE
Confidence 34556788888899999999999999999998876553211 13456667
Q ss_pred EEecCCCCCCcccccCCCCCceEEEeeecccccc------cCCccEEEEEcCCC-ceEEEEECC-c-EEEEecCCCCC--
Q 025645 131 RIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWK------VPIGAEVIGFSDKT-GVEMFTIGD-H-ILGIQGHPEYT-- 199 (250)
Q Consensus 131 ~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~------lp~~~~~la~s~~~-~v~~~~~~~-~-~~g~QfHPE~~-- 199 (250)
.+.+++.-..+++. ..+...+.|++.|.+ -.+++++.|.+.++ .++|++.++ + ++|+|||||+.
T Consensus 437 ~i~~gS~L~~iyG~-----~~i~erhrHry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~ 511 (525)
T TIGR00337 437 ILKPGTLAFKLYGK-----EEVYERHRHRYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSR 511 (525)
T ss_pred EECCCChHHHHhCC-----CceeecccceEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCC
Confidence 66643222222222 234455667777642 13789999999885 699999876 4 56999999964
Q ss_pred ----HHHHHHHHH
Q 025645 200 ----KDILYNLID 208 (250)
Q Consensus 200 ----~~~~~~~~~ 208 (250)
..+|..|++
T Consensus 512 p~~~~~LF~~FV~ 524 (525)
T TIGR00337 512 PNRPHPLFLGFVK 524 (525)
T ss_pred CCchhHHHHHHHh
Confidence 346666653
No 71
>PLN02327 CTP synthase
Probab=99.88 E-value=9.7e-22 Score=177.43 Aligned_cols=193 Identities=19% Similarity=0.220 Sum_probs=126.7
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-------------CCCCCcCEEEEcCCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-------------NDLHKYDGFVISGSPY 72 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-------------~~l~~~dglIi~Gg~~ 72 (250)
..+||++.--.. +.++|.+....|..+-...+.++++.|+...++.+. +.|.++||||+|||++
T Consensus 297 ~v~IalVGKY~~---l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG 373 (557)
T PLN02327 297 PVRIAMVGKYTG---LSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFG 373 (557)
T ss_pred ceEEEEEecccC---CcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCC
Confidence 468999863322 345666666666666667788899888877655432 2478999999999986
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCC------c----------------------e
Q 025645 73 DAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTG------W----------------------D 124 (250)
Q Consensus 73 ~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~------~----------------------~ 124 (250)
+... .+....++.+.+.++|+||||+|||+++.+++.++...+.. + +
T Consensus 374 ~~~~-----~G~i~ai~~are~~iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMR 448 (557)
T PLN02327 374 DRGV-----EGKILAAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMR 448 (557)
T ss_pred Cccc-----ccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEE
Confidence 6432 34456678888999999999999999999988766543210 0 1
Q ss_pred eeEEEEEEe-cCCCCCCcccccCCCCCceEEEeeeccccc-----cc-CCccEEEEEcCCC-ceEEEEECC-c-EEEEec
Q 025645 125 IGLRRVRIV-NDLAPCSFLEDLGEIPGSLSIMECHRDEVW-----KV-PIGAEVIGFSDKT-GVEMFTIGD-H-ILGIQG 194 (250)
Q Consensus 125 ~g~~~i~~~-~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~-----~l-p~~~~~la~s~~~-~v~~~~~~~-~-~~g~Qf 194 (250)
.|.+++.+. ++.....+|+. ...+...+.|+|+|. .+ ..++.+.|.+.++ .++++++.+ + ++|+||
T Consensus 449 LG~~~~~~~~~~S~l~~iYg~----~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQf 524 (557)
T PLN02327 449 LGSRRTYFQTPDCKSAKLYGN----VSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQF 524 (557)
T ss_pred CCCcccccCCCCCHHHHHhCC----ccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEc
Confidence 111111221 11111111111 012456677777774 24 4889999999877 499998865 4 559999
Q ss_pred CCCCC------HHHHHHHHHHH
Q 025645 195 HPEYT------KDILYNLIDRL 210 (250)
Q Consensus 195 HPE~~------~~~~~~~~~~~ 210 (250)
|||+. ..+|..|++..
T Consensus 525 HPE~~s~p~~~~pLF~~Fv~Aa 546 (557)
T PLN02327 525 HPEFKSRPGKPSPLFLGLIAAA 546 (557)
T ss_pred CCCCCCCCCCchHHHHHHHHHH
Confidence 99963 46777777654
No 72
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.87 E-value=5.7e-21 Score=158.36 Aligned_cols=181 Identities=19% Similarity=0.182 Sum_probs=117.7
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCC-----hhH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGND-----NWI 81 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~-----~~~ 81 (250)
|||+||+...... .....++|++.|+++..++... ..++++|+||||||.... +.. ...
T Consensus 1 ~~v~Vl~~~G~n~---------~~~~~~al~~~G~~~~~i~~~~------~~l~~~d~lilpGG~~~~-d~~~~~~~~~~ 64 (227)
T TIGR01737 1 MKVAVIRFPGTNC---------DRDTVYALRLLGVDAEIVWYED------GSLPDYDGVVLPGGFSYG-DYLRAGAIAAA 64 (227)
T ss_pred CeEEEEeCCCcCc---------HHHHHHHHHHCCCeEEEEecCC------CCCCCCCEEEECCCCccc-ccccccchhcc
Confidence 4899998653321 1224578888999988775321 236789999999986421 110 112
Q ss_pred HHHHHHHHHHHhcCCcEEEEehHHHHHHHH--cCceEEecCCC-ceeeEEEEEEecCCCCCCcccccCCCCC--ceEEEe
Q 025645 82 LKLCFMLQTLDAMQKKVLGICFGHQVLCRA--LGGKVGKAYTG-WDIGLRRVRIVNDLAPCSFLEDLGEIPG--SLSIME 156 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGIC~G~Qlla~a--~gg~v~~~~~~-~~~g~~~i~~~~~~~~~~l~~~~~~l~~--~~~~~~ 156 (250)
..+.++++.+.+.++|++|||.|+|+|+.+ ++|.+.++... +..+|..+++.+ ..++++++ ++. .+.++.
T Consensus 65 ~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~~~~~~~~~~~v~~--~~~~~~~~---~~~g~~~~~pi 139 (227)
T TIGR01737 65 SPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALLPNDSLRFICRWVYLRVEN--ADTIFTKN---YKKGEVIRIPI 139 (227)
T ss_pred hHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCceeecCCCceEEEeEEEEECC--CCChhhcc---CCCCCEEEEEe
Confidence 346678888888999999999999999996 88988887553 233455555543 34677776 553 345555
Q ss_pred eecccc--------cccCCccEEEEEcCC---------------CceEEEEECC-cEEEEecCCCC----------CHHH
Q 025645 157 CHRDEV--------WKVPIGAEVIGFSDK---------------TGVEMFTIGD-HILGIQGHPEY----------TKDI 202 (250)
Q Consensus 157 ~H~~~v--------~~lp~~~~~la~s~~---------------~~v~~~~~~~-~~~g~QfHPE~----------~~~~ 202 (250)
.|.+.- .+|.++..++.+..+ +.++++++++ +++|+|||||. +..+
T Consensus 140 ~H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~~~g~~~HpE~~~~~~~~~~~g~~~ 219 (227)
T TIGR01737 140 AHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGNVLGMMPHPERASEKLLGGDDGLKL 219 (227)
T ss_pred EcCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCCEEEEecCchhhcccccCCcccHHH
Confidence 777664 234445454444322 2366777754 89999999992 3556
Q ss_pred HHHHHH
Q 025645 203 LYNLID 208 (250)
Q Consensus 203 ~~~~~~ 208 (250)
++++++
T Consensus 220 ~~~~~~ 225 (227)
T TIGR01737 220 FESLVE 225 (227)
T ss_pred HHHHHh
Confidence 777654
No 73
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=5.2e-21 Score=168.47 Aligned_cols=180 Identities=17% Similarity=0.180 Sum_probs=126.7
Q ss_pred hCCHHHHHHHHHhcC-CCceEEEEeecCCCCC----CCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEE
Q 025645 25 YGGYFNVFVAAFGEE-GERWDLFRVVEGDFPD----FNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVL 99 (250)
Q Consensus 25 ~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~----~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pil 99 (250)
|++|+-.+.++|... |....++.-+..-.++ ...+--+|+||++.||+++. ....+.-..+++..+ +.+|||
T Consensus 23 YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~-~a~d~gI~~rl~~~~--~~iPil 99 (767)
T KOG1224|consen 23 YDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPM-CAADIGICLRLLLEC--RDIPIL 99 (767)
T ss_pred ccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCC-cHHHHHHHHHHHHhc--CCCcee
Confidence 456776677777665 4444433322222211 11123489999999999983 322232233333332 369999
Q ss_pred EEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccccCCc-cEEEEEcCCC
Q 025645 100 GICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVPIG-AEVIGFSDKT 178 (250)
Q Consensus 100 GIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~lp~~-~~~la~s~~~ 178 (250)
|||+|||.|+.+.|+.|...+.++|..+..++..++..-+.++.+ -|+.|....+|+..+..+|-+ +.+++++.+.
T Consensus 100 GICLGfQal~l~hGA~v~~~n~p~HGrvs~i~~~~~~~f~gi~sg---~~~~fK~~RYHSL~in~~pid~l~il~t~~dd 176 (767)
T KOG1224|consen 100 GICLGFQALGLVHGAHVVHANEPVHGRVSGIEHDGNILFSGIPSG---RNSDFKVVRYHSLIINSLPIDLLPILWTIYDD 176 (767)
T ss_pred eeehhhHhHhhhcccceecCCCcccceeeeEEecCcEEEccCCCC---CcccceeEEeEEEEecCCchhhhcceeEeecC
Confidence 999999999999999999888888888999998866555566666 678999999999999888866 5566666443
Q ss_pred c---eEEEEECC-cEEEEecCCC-----CCHHHHHHHHHHH
Q 025645 179 G---VEMFTIGD-HILGIQGHPE-----YTKDILYNLIDRL 210 (250)
Q Consensus 179 ~---v~~~~~~~-~~~g~QfHPE-----~~~~~~~~~~~~~ 210 (250)
. ++.+.+.+ |-||+||||| ++..+++||++..
T Consensus 177 ng~ilMsi~~~~fPhfG~qyHPES~~s~~g~~lfkNFl~lt 217 (767)
T KOG1224|consen 177 NGHILMSIMHSSFPHFGLQYHPESIASTYGSQLFKNFLDLT 217 (767)
T ss_pred CceEEEEeeccCCCccceeeChHHhhhhhhHHHHHHHHHhh
Confidence 2 55566655 7999999999 7789999998743
No 74
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.85 E-value=1.7e-20 Score=164.81 Aligned_cols=191 Identities=19% Similarity=0.206 Sum_probs=131.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC--CCCCC-cCEEEEcCCCCCCCCCChhHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF--NDLHK-YDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~l~~-~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
.+||++.--.+. .++|.+....+...--..+.++.+.|+...++... +.+.. +|||++|||.+... +++
T Consensus 289 v~IalVGKYv~l---~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~RG-----~eG 360 (533)
T COG0504 289 VTIALVGKYVEL---PDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYRG-----VEG 360 (533)
T ss_pred eEEEEEECCcCc---hhHHHHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCcCc-----hHH
Confidence 568888643332 44555554444444445567888888887665442 13333 99999999987654 567
Q ss_pred HHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEe--------------------cCC---------CceeeEEEEEEec
Q 025645 84 LCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGK--------------------AYT---------GWDIGLRRVRIVN 134 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~--------------------~~~---------~~~~g~~~i~~~~ 134 (250)
-...++.+.++++|+||||+|||+....+--+|.. ++. ..+.|.+++.+.+
T Consensus 361 kI~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~ 440 (533)
T COG0504 361 KIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKP 440 (533)
T ss_pred HHHHHHHHHhcCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCC
Confidence 78889999999999999999999987643211111 110 1456777777775
Q ss_pred CCCCCCcccccCCCCCceEEEeeecccccc------cCCccEEEEEcCCCc-eEEEEECCc--EEEEecCCCCC------
Q 025645 135 DLAPCSFLEDLGEIPGSLSIMECHRDEVWK------VPIGAEVIGFSDKTG-VEMFTIGDH--ILGIQGHPEYT------ 199 (250)
Q Consensus 135 ~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~------lp~~~~~la~s~~~~-v~~~~~~~~--~~g~QfHPE~~------ 199 (250)
.+....+++. +.....+-|.|.|.+ -..|+.+.+.|.++. +++++..++ ++|+|||||+.
T Consensus 441 gT~a~~lY~~-----~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~p 515 (533)
T COG0504 441 GTLAAKLYGK-----DEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRP 515 (533)
T ss_pred CcHHHHHhCC-----CeeeeeccchhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCC
Confidence 5444444543 567778889999853 246899999998754 899998874 78999999975
Q ss_pred HHHHHHHHHHH
Q 025645 200 KDILYNLIDRL 210 (250)
Q Consensus 200 ~~~~~~~~~~~ 210 (250)
+.++..|++..
T Consensus 516 hPlf~~fv~Aa 526 (533)
T COG0504 516 HPLFVGFVKAA 526 (533)
T ss_pred CccHHHHHHHH
Confidence 35777777654
No 75
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.84 E-value=1.8e-20 Score=155.40 Aligned_cols=182 Identities=15% Similarity=0.096 Sum_probs=103.0
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
|||+||...-... . ..++|++.|.++..++ +++++.++|+||||||....+....-...+.+
T Consensus 2 m~igVLa~qG~~~----------e-~~~aL~~lG~ev~~v~-------~~~~L~~~DgLILPGGfs~~~~~L~~~~gl~~ 63 (248)
T PLN02832 2 MAIGVLALQGSFN----------E-HIAALRRLGVEAVEVR-------KPEQLEGVSGLIIPGGESTTMAKLAERHNLFP 63 (248)
T ss_pred cEEEEEeCCCchH----------H-HHHHHHHCCCcEEEeC-------CHHHhccCCEEEeCCCHHHHHHHHHhhcchHH
Confidence 5899997654332 2 2578888899887775 34567889999999976544322111123566
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHHc-C----c---------eEEecCCC------------ceeeEEEEEEecCCCCCC
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRAL-G----G---------KVGKAYTG------------WDIGLRRVRIVNDLAPCS 140 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a~-g----g---------~v~~~~~~------------~~~g~~~i~~~~~~~~~~ 140 (250)
.|+.+.+.++|+||||+|||+|+... + + .|.|+-.+ +++||++++..+ -..
T Consensus 64 ~I~~~v~~g~PvLGiC~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~sfe~~l~ip~~gwn~~~~~~---~~~ 140 (248)
T PLN02832 64 ALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSFETELPVPELAASEGGPET---FRA 140 (248)
T ss_pred HHHHHHHcCCCEEEEChhHHHHHHHhcccccCCcceeCCccceEEecccCceeEeEEcCCcCCccccccccccc---cce
Confidence 77777778999999999999999864 1 1 22222111 233333221000 000
Q ss_pred cccccCCC-CCceEEEeeecccccccCCccEEEEEcCCC--ceEEEEECCcEEEEecCCCCC--HHHHHHHHHHH
Q 025645 141 FLEDLGEI-PGSLSIMECHRDEVWKVPIGAEVIGFSDKT--GVEMFTIGDHILGIQGHPEYT--KDILYNLIDRL 210 (250)
Q Consensus 141 l~~~~~~l-~~~~~~~~~H~~~v~~lp~~~~~la~s~~~--~v~~~~~~~~~~g~QfHPE~~--~~~~~~~~~~~ 210 (250)
.|-+...+ +..-.++..|++.+.. .....++++++.+ .+.+...+++++|+|||||.+ ..+.++|++..
T Consensus 141 vFirap~i~~~~~~v~~l~sy~~~~-~~~~~~~a~~~y~~~~~~~aV~qgnvlatqFHPEls~d~rih~~Fl~~~ 214 (248)
T PLN02832 141 VFIRAPAILSVGPGVEVLAEYPLPS-EKALYSSSTDAEGRDKVIVAVKQGNLLATAFHPELTADTRWHSYFVKMV 214 (248)
T ss_pred EEecCCceEeCCCcEEEEEEecccc-cccccccccccccCCceEEEEEeCCEEEEEccCccCCccHHHHHHHHHH
Confidence 01110000 1122366667766421 1112233444333 233334455899999999965 46788888765
No 76
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=99.82 E-value=8.5e-19 Score=147.87 Aligned_cols=196 Identities=18% Similarity=0.264 Sum_probs=128.8
Q ss_pred ccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC--------------CC--CCCCcCEEE
Q 025645 3 LMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD--------------FN--DLHKYDGFV 66 (250)
Q Consensus 3 ~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~--------------~~--~l~~~dglI 66 (250)
+.+++||+||+.+++... ....|.++|.....++++..+....... .+ .-+.+||+|
T Consensus 31 dirpL~I~IlNLMP~K~~-------TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglI 103 (298)
T PF04204_consen 31 DIRPLKIGILNLMPDKEE-------TERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLI 103 (298)
T ss_dssp TS--EEEEEE---SSHHH-------HHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEE
T ss_pred cccceEEEEEecccchHH-------HHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEE
Confidence 457889999999998754 3456888999888888765544322111 01 125799999
Q ss_pred EcCCCCC--CCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHH-HHHHcCceEEecCCCceeeEEEEEEecCCCCCCccc
Q 025645 67 ISGSPYD--AYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQV-LCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLE 143 (250)
Q Consensus 67 i~Gg~~~--~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Ql-la~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~ 143 (250)
|||.|-. .+++.+|+.++.++++++.++..+.|.||||.|. |...+|-.-...++ +-+|+.+-++.. ..++|++
T Consensus 104 ITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~-KlfGVf~~~~~~--~~~pLl~ 180 (298)
T PF04204_consen 104 ITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPE-KLFGVFEHRVLD--PDHPLLR 180 (298)
T ss_dssp E---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEE-EEEEEEEEEES---SS-GGGT
T ss_pred EeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCC-cceeceeeeccC--CCChhhc
Confidence 9999864 5677889999999999999999999999999999 55666766666554 679999988664 3689999
Q ss_pred ccCCCCCceEEEeeecccccc--c--CCccEEEEEcCCCceEEEEECC-cEEEEecCCCCCHHH-HHHHHHHHh
Q 025645 144 DLGEIPGSLSIMECHRDEVWK--V--PIGAEVIGFSDKTGVEMFTIGD-HILGIQGHPEYTKDI-LYNLIDRLL 211 (250)
Q Consensus 144 ~~~~l~~~~~~~~~H~~~v~~--l--p~~~~~la~s~~~~v~~~~~~~-~~~g~QfHPE~~~~~-~~~~~~~~~ 211 (250)
| +++.|.++++..-.+.. + .++++++|.|++..+..+..++ +.+-+|+|||++... .+++.+.+.
T Consensus 181 G---fdd~f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~~G~~l~~~~d~r~vfi~GH~EYd~~TL~~EY~RD~~ 251 (298)
T PF04204_consen 181 G---FDDTFFAPHSRYTEIDRDDIKKAPGLEVLAESEEAGVFLVASKDGRQVFITGHPEYDADTLAKEYRRDLA 251 (298)
T ss_dssp T-----SEEEEEEEEEEE--HHHHCT-TTEEEEEEETTTEEEEEEECCCTEEEE-S-TT--TTHHHHHHHHHHH
T ss_pred C---CCccccCCcccccCCCHHHHhcCCCcEEEeccCCcceEEEEcCCCCEEEEeCCCccChhHHHHHHHHHHh
Confidence 9 88899999888777642 3 7789999999998887777544 788899999998765 445555554
No 77
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.81 E-value=3e-18 Score=141.21 Aligned_cols=173 Identities=18% Similarity=0.194 Sum_probs=112.8
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHh-cCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCC--C--CChhH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFG-EEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAY--G--NDNWI 81 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~--~--~~~~~ 81 (250)
|||+||........ .-+.++|+ ..|.++..++.. +.+++++|+||||||..... . ...-.
T Consensus 1 ~~v~Vl~~~G~n~~---------~d~~~a~~~~~G~~~~~v~~~------~~~l~~~D~lvipGG~~~~d~l~~~~~~~~ 65 (219)
T PRK03619 1 MKVAVIVFPGSNCD---------RDMARALRDLLGAEPEYVWHK------ETDLDGVDAVVLPGGFSYGDYLRCGAIAAF 65 (219)
T ss_pred CEEEEEecCCcChH---------HHHHHHHHhcCCCeEEEEecC------cCCCCCCCEEEECCCCchhhhhccchhhhc
Confidence 47999985543211 11356787 789887766532 23467899999999864210 0 11112
Q ss_pred HHHHHHHHHHHhcCCcEEEEehHHHHHHHH--cCceEEecCCC-ceeeEEEEEEecCCCCCCcccccCCCC--CceEEEe
Q 025645 82 LKLCFMLQTLDAMQKKVLGICFGHQVLCRA--LGGKVGKAYTG-WDIGLRRVRIVNDLAPCSFLEDLGEIP--GSLSIME 156 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGIC~G~Qlla~a--~gg~v~~~~~~-~~~g~~~i~~~~~~~~~~l~~~~~~l~--~~~~~~~ 156 (250)
..+.++++.+.+.++|++|||.|+|+|+.+ ++|++.++... ++.+|..+++.+ ..++++++ +. ..+.++.
T Consensus 66 ~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~~~~~v~v~i~~--~~~~~~~~---~~~g~~~~~~~ 140 (219)
T PRK03619 66 SPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRNASLKFICRDVHLRVEN--NDTPFTSG---YEKGEVIRIPI 140 (219)
T ss_pred hHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcEEEEEEEEEECC--CCChhhcC---CCCCCEEEEEE
Confidence 456778888888999999999999999997 89999887653 233566666653 35677766 42 3355666
Q ss_pred eecccc--------ccc-CCccEEEEEc---CCCc---eEEEEE-CCcEEEEecCCCCC
Q 025645 157 CHRDEV--------WKV-PIGAEVIGFS---DKTG---VEMFTI-GDHILGIQGHPEYT 199 (250)
Q Consensus 157 ~H~~~v--------~~l-p~~~~~la~s---~~~~---v~~~~~-~~~~~g~QfHPE~~ 199 (250)
.|+..- .++ ..+..++..+ +++. +.++.. .++++|+|||||+.
T Consensus 141 aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~~~~~g~~~HPE~~ 199 (219)
T PRK03619 141 AHGEGNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVNEKGNVLGMMPHPERA 199 (219)
T ss_pred EcCcccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCCCCCCEEEEeCCCCcc
Confidence 776652 234 3445555554 3432 555665 34799999999954
No 78
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.80 E-value=5.6e-19 Score=139.32 Aligned_cols=161 Identities=19% Similarity=0.199 Sum_probs=109.6
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
+||+||...-+.. + -.++|++.|.++.+++ ++++++++|+||||||++...........+.+
T Consensus 3 ~~igVLalqG~~~----------E-h~~al~~lG~~v~~v~-------~~~~l~~~D~LILPGG~~t~~~~ll~~~~l~~ 64 (179)
T PRK13526 3 QKVGVLAIQGGYQ----------K-HADMFKSLGVEVKLVK-------FNNDFDSIDRLVIPGGESTTLLNLLNKHQIFD 64 (179)
T ss_pred cEEEEEECCccHH----------H-HHHHHHHcCCcEEEEC-------CHHHHhCCCEEEECCChHHHHHHHhhhcCcHH
Confidence 7899998554432 1 2467888898877665 44567899999999985432111111123567
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHH---cC---ceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecc
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRA---LG---GKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRD 160 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a---~g---g~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~ 160 (250)
.+++..+ ++|++|||.|+|+|+.. || ++|.++..+.+.......+. +.+ + .+...+....
T Consensus 65 ~Ik~~~~-~kpilGICaG~qlL~~~s~~Lg~idg~V~Rn~~Grq~~sf~~~~~--------~~~---~--~~~~vFiRAP 130 (179)
T PRK13526 65 KLYNFCS-SKPVFGTCAGSIILSKGEGYLNLLDLEVQRNAYGRQVDSFVADIS--------FND---K--NITGVFIRAP 130 (179)
T ss_pred HHHHHHc-CCcEEEEcHHHHHHHccCCCCCCccEEEEEcCCCCccceeeeecC--------cCC---c--eEEEEEEcCc
Confidence 7777664 78999999999999983 33 67777765533322222221 122 2 4778888888
Q ss_pred cccccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCHH
Q 025645 161 EVWKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTKD 201 (250)
Q Consensus 161 ~v~~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~~ 201 (250)
.|.+..++.++||+-++ .+.+.+. ++++++-||||.+.+
T Consensus 131 ~i~~~~~~v~vla~~~~-~~v~v~q-~~~l~~~FHPElt~d 169 (179)
T PRK13526 131 KFIVVGNQVDILSKYQN-SPVLLRQ-ANILVSSFHPELTQD 169 (179)
T ss_pred eEeEcCCCcEEEEEECC-EEEEEEE-CCEEEEEeCCccCCC
Confidence 88889999999999865 3445554 479999999998753
No 79
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.79 E-value=1.2e-18 Score=161.86 Aligned_cols=171 Identities=21% Similarity=0.208 Sum_probs=127.6
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
.||++++|+...+ ..+.|.+.|+++.++. .+++... .+||||++++||+++.-... +.+
T Consensus 173 ~~I~aiDcG~K~N------------~IRcL~~RGa~vtVvP---w~~~i~~--~~yDGlflSNGPGdPe~~~~----~v~ 231 (1435)
T KOG0370|consen 173 LRILAIDCGLKYN------------QIRCLVKRGAEVTVVP---WDYPIAK--EEYDGLFLSNGPGDPELCPL----LVQ 231 (1435)
T ss_pred cEEEEcccCchHH------------HHHHHHHhCceEEEec---CCccccc--cccceEEEeCCCCCchhhHH----HHH
Confidence 4788888876543 3578889999998874 2333221 37999999999999854433 344
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc--c
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW--K 164 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~--~ 164 (250)
-++++++.++|++|||+|||+|+.+.|++..+++.+.+.+..++.... . ..-+...+.|+|+|. .
T Consensus 232 ~vr~lL~~~~PvfGIClGHQllA~AaGakT~KmKyGNRGhNiP~~~~~--------t-----Grc~ITSQNHGYAVD~~t 298 (1435)
T KOG0370|consen 232 NVRELLESNVPVFGICLGHQLLALAAGAKTYKMKYGNRGHNIPCTCRA--------T-----GRCFITSQNHGYAVDPAT 298 (1435)
T ss_pred HHHHHHhCCCCeEEEehhhHHHHHhhCCceEEeeccccCCCccceecc--------C-----ceEEEEecCCceeecccc
Confidence 445555667999999999999999999999999888777776665542 1 145667789999985 5
Q ss_pred cCCccEEEEEc-CCCceEEEEECC-cEEEEecCCCCC------HHHHHHHHHHHh
Q 025645 165 VPIGAEVIGFS-DKTGVEMFTIGD-HILGIQGHPEYT------KDILYNLIDRLL 211 (250)
Q Consensus 165 lp~~~~~la~s-~~~~v~~~~~~~-~~~g~QfHPE~~------~~~~~~~~~~~~ 211 (250)
+|.+++.+-.+ +++..+++.|.. |++++|||||.+ .-++..|++..+
T Consensus 299 Lp~gWk~lFvN~NDgSNEGI~Hss~P~fSvQFHPEat~GP~DTeyLFDiFi~lvk 353 (1435)
T KOG0370|consen 299 LPAGWKPLFVNANDGSNEGIMHSSKPFFSVQFHPEATPGPHDTEYLFDVFIELVK 353 (1435)
T ss_pred ccCCCchheeecccCCCceEecCCCCceeeecCCcCCCCCcchHHHHHHHHHHHH
Confidence 89999888877 456688888866 899999999943 346777776554
No 80
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=99.77 E-value=1.8e-17 Score=138.87 Aligned_cols=195 Identities=15% Similarity=0.162 Sum_probs=143.3
Q ss_pred ccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC--------------CCC--CCCcCEEE
Q 025645 3 LMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD--------------FND--LHKYDGFV 66 (250)
Q Consensus 3 ~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~--------------~~~--l~~~dglI 66 (250)
+.+++||+||+.+++... ....|.++|.....++++..+....... .++ -+++||+|
T Consensus 32 dirpL~I~ILNLMP~K~~-------TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlI 104 (300)
T TIGR01001 32 DIRPLEILILNLMPKKIE-------TENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLI 104 (300)
T ss_pred cccceeEEEEecCCccHH-------HHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEE
Confidence 346899999999999854 3456888998888776654443322111 111 25799999
Q ss_pred EcCCCCC--CCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHc-CceEEecCCCceeeEEEEEEecCCCCCCccc
Q 025645 67 ISGSPYD--AYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRAL-GGKVGKAYTGWDIGLRRVRIVNDLAPCSFLE 143 (250)
Q Consensus 67 i~Gg~~~--~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~-gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~ 143 (250)
|||.|-. .+++.+++.++.++++++.++-...|.||||+|.....+ |-.-...++ +-+|+.+-++. ..++|++
T Consensus 105 ITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~-KlfGVf~h~~~---~~~pL~r 180 (300)
T TIGR01001 105 ITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPE-KLSGVYKHDIA---PDSLLLR 180 (300)
T ss_pred EcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCC-ceEEeecCccC---CCCcccc
Confidence 9999864 567888999999999999999999999999999966554 444344443 67898876665 2689999
Q ss_pred ccCCCCCceEEEeeeccccc----ccCCccEEEEEcCCCceEEEEECC-cEEEEecCCCCCHHHH-HHHHHHHh
Q 025645 144 DLGEIPGSLSIMECHRDEVW----KVPIGAEVIGFSDKTGVEMFTIGD-HILGIQGHPEYTKDIL-YNLIDRLL 211 (250)
Q Consensus 144 ~~~~l~~~~~~~~~H~~~v~----~lp~~~~~la~s~~~~v~~~~~~~-~~~g~QfHPE~~~~~~-~~~~~~~~ 211 (250)
| +++.|.++++..-.|. ...++++++|.|+...+..+..++ +-+-+++|||++...+ ++..+.+.
T Consensus 181 G---fdd~f~~PhSR~t~i~~~~i~~~~~L~vla~s~e~G~~l~~s~d~r~vfi~GH~EYd~~TL~~EY~RD~~ 251 (300)
T TIGR01001 181 G---FDDFFLAPHSRYADFDAEDIDKVTDLEILAESDEAGVYLAANKDERNIFVTGHPEYDAYTLHQEYVRDIG 251 (300)
T ss_pred C---CCCccccCCCCCCCCCHHHHhcCCCCeEEecCCCcceEEEEcCCCCEEEEcCCCccChhHHHHHHHHHHH
Confidence 9 7888988888765664 124689999999887777776654 6677999999998754 45554543
No 81
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=99.73 E-value=6.2e-17 Score=127.76 Aligned_cols=152 Identities=13% Similarity=0.180 Sum_probs=114.6
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC--CCCC-C-------------CCCCCcCEEEEcCCCC
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG--DFPD-F-------------NDLHKYDGFVISGSPY 72 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~~~-~-------------~~l~~~dglIi~Gg~~ 72 (250)
|+||+.+++... ....|.+.|.....++++...... .... + ....+|||+||||+|.
T Consensus 1 I~ilNlMp~k~~-------TE~qf~rlL~~~~~qv~v~~~~~~~h~~~~~~~~~l~~~Y~~~~~i~~~~yDGlIITGApv 73 (175)
T cd03131 1 IGILNLMPDKIQ-------TERQFLRLLGNTPLQVEITFIRPSSHSSKNTPPEHVNRFYETFDDIRDAKFDGLIVTGAPV 73 (175)
T ss_pred CEEEeCCCCcHH-------HHHHHHHHHhcCCccceEEEEecCCCCCCCCCHHHHHHhccCHHHccccCCCEEEEeCCCc
Confidence 689999998864 345678888777666554433322 1111 1 1357899999999997
Q ss_pred C--CCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCC
Q 025645 73 D--AYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPG 150 (250)
Q Consensus 73 ~--~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~ 150 (250)
. .+++.+|+.++.+++.++.++.+|+||||||+|+...+++|..+.....+..|....++.. .++|+++ +++
T Consensus 74 e~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~~Gvf~~~~~~---~hpL~~g---~~d 147 (175)
T cd03131 74 EHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKIFGVFPHTILE---PHPLLRG---LDD 147 (175)
T ss_pred ccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCceEEEEEeeecC---CCccccC---CCC
Confidence 5 4566688899999999999999999999999999999999987444334678888777753 6899999 899
Q ss_pred ceEEEeeecccccc----cCCccEEEE
Q 025645 151 SLSIMECHRDEVWK----VPIGAEVIG 173 (250)
Q Consensus 151 ~~~~~~~H~~~v~~----lp~~~~~la 173 (250)
.|.++++|...|.. ..+++++++
T Consensus 148 ~F~~PhSR~~~v~~~~~~~~~~l~il~ 174 (175)
T cd03131 148 GFDVPHSRYAEVDREDIEEAAGLTILA 174 (175)
T ss_pred ceeecCcccccCCHHHHhhCCCCEEcc
Confidence 99999999988752 245676665
No 82
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.73 E-value=7.4e-19 Score=141.43 Aligned_cols=231 Identities=14% Similarity=0.143 Sum_probs=135.0
Q ss_pred eEEEEecCCCC--hhHHHhhCC--HHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 8 RYALFLAAKDS--DYVLKVYGG--YFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 8 riail~~~~~~--~~~~~~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
-|+||....+. ..+...++. +.++++++++..|+++.++.....+..-...++.++|||+|||-.-.+ .+.+-
T Consensus 54 vIGIL~hpg~g~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak~~---dY~~v 130 (340)
T KOG1559|consen 54 VIGILSHPGDGASGRLKNATGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAKRG---DYFEV 130 (340)
T ss_pred eeEEeccCCCCccceeccccCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccccc---cHHHH
Confidence 48888733222 223332332 347889999999999988875433211112356789999999943322 23333
Q ss_pred HHHHHHHHHhc-----CCcEEEEehHHHHHHHHcC-ceEEecCCCceeeEEEEEEecCC-CCCCcccccCCCCC------
Q 025645 84 LCFMLQTLDAM-----QKKVLGICFGHQVLCRALG-GKVGKAYTGWDIGLRRVRIVNDL-APCSFLEDLGEIPG------ 150 (250)
Q Consensus 84 ~~~~i~~~~~~-----~~PilGIC~G~Qlla~a~g-g~v~~~~~~~~~g~~~i~~~~~~-~~~~l~~~~~~l~~------ 150 (250)
...+....+++ ..||+|||+|+.+|..... ++..-.......-..+++++.+. ....+|++ +|.
T Consensus 131 vkkifnk~le~nDaGehFPvyg~CLGFE~lsmiISqnrdile~~d~vd~AssLqF~~nvn~~~t~FQr---FPpELLkkL 207 (340)
T KOG1559|consen 131 VKKIFNKVLERNDAGEHFPVYGICLGFELLSMIISQNRDILERFDAVDVASSLQFVGNVNIHGTMFQR---FPPELLKKL 207 (340)
T ss_pred HHHHHHHHHhccCCccccchhhhhhhHHHHHHHHhcChhHHHhhcccccccceeeecccceeehhHhh---CCHHHHHHh
Confidence 34444445443 4899999999999988654 22111111112222344444321 23455665 443
Q ss_pred --ceEEEeeecccccc--------cCCccEEEEEcCCCc----eEEEEE-CCcEEEEecCCCCCH-----HHHHHHHHHH
Q 025645 151 --SLSIMECHRDEVWK--------VPIGAEVIGFSDKTG----VEMFTI-GDHILGIQGHPEYTK-----DILYNLIDRL 210 (250)
Q Consensus 151 --~~~~~~~H~~~v~~--------lp~~~~~la~s~~~~----v~~~~~-~~~~~g~QfHPE~~~-----~~~~~~~~~~ 210 (250)
.-.+.+.|.+.++. |..-+.++.++.|+. |..++. +.|++|+|||||-.+ .-+.+-=+.+
T Consensus 208 ~~dcLvmq~Hk~gisp~nF~~N~~Ls~FFnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKnafEWgss~IpHsedAi 287 (340)
T KOG1559|consen 208 STDCLVMQNHKFGISPKNFQGNPALSSFFNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKNAFEWGSSDIPHSEDAI 287 (340)
T ss_pred ccchheeeccccccchhhccCCHHHHHHHhheeeecCCCceEEEEeecceeccceeeeecCccCccccccCCCCCChhHH
Confidence 33488999999741 334466777776552 222332 458999999999321 0011111222
Q ss_pred hcCCCccHHHHHHHHhhccccCCcHHHHHHHHHHH
Q 025645 211 LNNNSIEREFAENAKFGLEIAEPDRKCWEKICRNF 245 (250)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 245 (250)
+..+...+-++.+++++++.+... ++..++|++|
T Consensus 288 qvtqhaA~~lVsEARKs~nrp~Se-kvlsnLIYny 321 (340)
T KOG1559|consen 288 QVTQHAANYLVSEARKSLNRPESE-KVLSNLIYNY 321 (340)
T ss_pred HHHHHHHHHHHHHHHhhcCCccHH-HHHHHHHhcc
Confidence 222344567899999999997655 6889999997
No 83
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.69 E-value=6.9e-15 Score=123.76 Aligned_cols=182 Identities=19% Similarity=0.246 Sum_probs=110.3
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCC--CCCCC-Chh
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPY--DAYGN-DNW 80 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~--~~~~~-~~~ 80 (250)
|+++|||||...-.... ....++|+++|.++.++++... ......++++|+||||||.. +.... ..|
T Consensus 1 ~~~~kvaVl~~pG~n~d---------~e~~~Al~~aG~~v~~v~~~~~-~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~ 70 (261)
T PRK01175 1 MESIRVAVLRMEGTNCE---------DETVKAFRRLGVEPEYVHINDL-AAERKSVSDYDCLVIPGGFSAGDYIRAGAIF 70 (261)
T ss_pred CCCCEEEEEeCCCCCCH---------HHHHHHHHHCCCcEEEEeeccc-cccccchhhCCEEEECCCCCcccccccchhh
Confidence 34579999985433211 1135788889999888775431 11223578899999999943 11111 122
Q ss_pred HHH----HHHHHHHHHhcCCcEEEEehHHHHHHHH--cCc----------eEEecCCC-ceeeEEEEEEecCCCCCCccc
Q 025645 81 ILK----LCFMLQTLDAMQKKVLGICFGHQVLCRA--LGG----------KVGKAYTG-WDIGLRRVRIVNDLAPCSFLE 143 (250)
Q Consensus 81 ~~~----~~~~i~~~~~~~~PilGIC~G~Qlla~a--~gg----------~v~~~~~~-~~~g~~~i~~~~~~~~~~l~~ 143 (250)
... +.+.++++.+.++|+||||.|+|+|+.+ +.| .+.++..+ ++..|..+++.. ..+++++
T Consensus 71 ~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg~~~~~~~~~~~L~~N~s~~f~~~~~~~~v~~--~~s~~~~ 148 (261)
T PRK01175 71 AARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPGFDEIAEKPEMALTVNESNRFECRPTYLKKEN--RKCIFTK 148 (261)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCCCCccccCCcceEeecCCCCeEEeeeEEEECC--CCChhHh
Confidence 222 3477888889999999999999999985 333 45555432 455666666654 3566665
Q ss_pred ccCCCCCceEEEeeecccccc---------c-CCccEEEEE------------cCCC---ceEEEEEC-CcEEEEecCCC
Q 025645 144 DLGEIPGSLSIMECHRDEVWK---------V-PIGAEVIGF------------SDKT---GVEMFTIG-DHILGIQGHPE 197 (250)
Q Consensus 144 ~~~~l~~~~~~~~~H~~~v~~---------l-p~~~~~la~------------s~~~---~v~~~~~~-~~~~g~QfHPE 197 (250)
++. ...+.++..|.+.=.. | ..+..++-+ +.++ .|+++... ++++|...|||
T Consensus 149 ~~~--~~~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~~~IAGi~~~~G~vlglMpHPE 226 (261)
T PRK01175 149 LLK--KDVFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSIYNIAGITNEKGNVIGLMPHPE 226 (261)
T ss_pred ccC--CCEEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCChhhcceeECCCCCEEEEcCCHH
Confidence 521 2446667777765211 1 122333333 2222 26677764 48999999999
Q ss_pred CC
Q 025645 198 YT 199 (250)
Q Consensus 198 ~~ 199 (250)
..
T Consensus 227 r~ 228 (261)
T PRK01175 227 RA 228 (261)
T ss_pred Hh
Confidence 43
No 84
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.69 E-value=6.1e-17 Score=127.21 Aligned_cols=155 Identities=21% Similarity=0.242 Sum_probs=95.7
Q ss_pred HHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcC-CcEEEEehHHHHHHHH
Q 025645 33 VAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQ-KKVLGICFGHQVLCRA 111 (250)
Q Consensus 33 ~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~-~PilGIC~G~Qlla~a 111 (250)
.+.|++.|.+...++ .+++|+++||||||||.+...........+.+.++.+...+ +||||+|.|+-+||..
T Consensus 12 ~~~l~~lg~~~~~Vr-------~~~dL~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~ 84 (188)
T PF01174_consen 12 IRMLERLGAEVVEVR-------TPEDLEGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKE 84 (188)
T ss_dssp HHHHHHTTSEEEEE--------SGGGGTT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEE
T ss_pred HHHHHHcCCCeEEeC-------CHHHHccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhh
Confidence 468888898887666 55678999999999997654322222235677788888877 9999999999999874
Q ss_pred cCceEEecCCCceeeEEEEEEecCC--CCCCcccc---cCCCCCceEEEeeecccccccC--CccEEEEEcCCCceEEEE
Q 025645 112 LGGKVGKAYTGWDIGLRRVRIVNDL--APCSFLED---LGEIPGSLSIMECHRDEVWKVP--IGAEVIGFSDKTGVEMFT 184 (250)
Q Consensus 112 ~gg~v~~~~~~~~~g~~~i~~~~~~--~~~~l~~~---~~~l~~~~~~~~~H~~~v~~lp--~~~~~la~s~~~~v~~~~ 184 (250)
..+. .....|.-.|++..+. ++-.-|.. +..+...+.+.+.+...|.++. ++.++++..++ .+.+.+
T Consensus 85 v~~~-----~q~~Lg~ldi~V~RNafGrQ~~SFe~~l~i~~~~~~~~avFIRAP~I~~v~~~~~v~vla~~~g-~iVav~ 158 (188)
T PF01174_consen 85 VEGQ-----GQPLLGLLDITVRRNAFGRQLDSFEADLDIPGLGEPFPAVFIRAPVIEEVGSPEGVEVLAELDG-KIVAVR 158 (188)
T ss_dssp ECSS-----CCTSS--EEEEEETTTTCSSSCEEEEEEEETTTESEEEEEESS--EEEEE--TTTEEEEEEETT-EEEEEE
T ss_pred hhhc-----ccccccceeEEEEccccccchhcEEEEEEeecCCCcEEEEEcCCcEEEEeeccccccccccccc-ceEEEE
Confidence 3322 1123455555554331 11111110 0013356888888888887765 78999998875 455666
Q ss_pred ECCcEEEEecCCCCCHH
Q 025645 185 IGDHILGIQGHPEYTKD 201 (250)
Q Consensus 185 ~~~~~~g~QfHPE~~~~ 201 (250)
. ++++++-||||.+.+
T Consensus 159 q-gn~latsFHPELT~D 174 (188)
T PF01174_consen 159 Q-GNILATSFHPELTDD 174 (188)
T ss_dssp E-TTEEEESS-GGGSST
T ss_pred e-cCEEEEEeCCcccCc
Confidence 4 479999999997755
No 85
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.68 E-value=2.1e-16 Score=137.03 Aligned_cols=182 Identities=19% Similarity=0.198 Sum_probs=112.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-------------CCCCCcCEEEEcCCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-------------NDLHKYDGFVISGSPY 72 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-------------~~l~~~dglIi~Gg~~ 72 (250)
+.+||++.--... .+.|-+....+..+--..+..+++.|+...++... ..+..+|||++|||.+
T Consensus 298 ~V~IalVGKYt~l---~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG 374 (585)
T KOG2387|consen 298 PVRIALVGKYTKL---SDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFG 374 (585)
T ss_pred cEEEEEEeccccc---hHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCccc
Confidence 4689988633221 22332222222222223355677777776443211 1256799999999988
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceE--------------------EecCCC--------ce
Q 025645 73 DAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKV--------------------GKAYTG--------WD 124 (250)
Q Consensus 73 ~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v--------------------~~~~~~--------~~ 124 (250)
+.. +.+....++++.+.++|+||||+|||+....+.-++ .-++.. .+
T Consensus 375 ~RG-----veG~i~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMR 449 (585)
T KOG2387|consen 375 DRG-----VEGKILAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMR 449 (585)
T ss_pred ccc-----hhHHHHHHHHHHhcCCCeEeeehhhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceee
Confidence 765 467778889999999999999999999776442111 111110 22
Q ss_pred eeEEEEEEecC-CCCCCcccccCCCCCceEEEeeecccccc------cCCccEEEEEcCCCc-eEEEEECCc--EEEEec
Q 025645 125 IGLRRVRIVND-LAPCSFLEDLGEIPGSLSIMECHRDEVWK------VPIGAEVIGFSDKTG-VEMFTIGDH--ILGIQG 194 (250)
Q Consensus 125 ~g~~~i~~~~~-~~~~~l~~~~~~l~~~~~~~~~H~~~v~~------lp~~~~~la~s~~~~-v~~~~~~~~--~~g~Qf 194 (250)
.|..+..+.+. .....|+++ .+...-.+-|.|.|.. ...|+..++.+.++. .+.++.+++ +.|+||
T Consensus 450 LG~R~t~f~~~~s~~~kLYG~----~~~V~ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg~Qf 525 (585)
T KOG2387|consen 450 LGSRRTVFQDKDSKLRKLYGN----VEFVDERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQF 525 (585)
T ss_pred ecccceeeecCchHHHHHhCC----chhhhhhhhcceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCceeeecc
Confidence 34444444332 112334554 2445566788888742 246788899987766 788888774 789999
Q ss_pred CCCCC
Q 025645 195 HPEYT 199 (250)
Q Consensus 195 HPE~~ 199 (250)
||||.
T Consensus 526 HPE~~ 530 (585)
T KOG2387|consen 526 HPEFK 530 (585)
T ss_pred CHHHh
Confidence 99965
No 86
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=2.2e-15 Score=117.15 Aligned_cols=170 Identities=20% Similarity=0.204 Sum_probs=110.7
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCC-CceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEG-ERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
|||+||...-+..+ -.+.+++++ .++..++ .+++|+++||||||||.+......-...++.
T Consensus 1 m~IGVLalQG~v~E-----------H~~~l~~~~~~e~~~Vk-------~~~dL~~~d~LIiPGGESTTi~rL~~~~gl~ 62 (194)
T COG0311 1 MKIGVLALQGAVEE-----------HLEALEKAGGAEVVEVK-------RPEDLEGVDGLIIPGGESTTIGRLLKRYGLL 62 (194)
T ss_pred CeEEEEEecccHHH-----------HHHHHHhhcCCceEEEc-------CHHHhccCcEEEecCccHHHHHHHHHHcCcH
Confidence 57999886554321 135677774 7666665 4567899999999999765432222123456
Q ss_pred HHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecC--CCCCCcccc---cCCC--CCceEEEeee
Q 025645 86 FMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVND--LAPCSFLED---LGEI--PGSLSIMECH 158 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~--~~~~~l~~~---~~~l--~~~~~~~~~H 158 (250)
+-+++..+.++|+||.|.|+-+||.-.-+ ....+..|.-.+++..+ +++-.-|.. +..+ +..+.+.+..
T Consensus 63 e~l~~~~~~G~Pv~GTCAGlIlLakei~~----~~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~di~~~~~~~~~~avFIR 138 (194)
T COG0311 63 EPLREFIADGLPVFGTCAGLILLAKEILD----GPEQPLLGLLDVTVRRNAFGRQVDSFETELDIEGFGLPFPFPAVFIR 138 (194)
T ss_pred HHHHHHHHcCCceEEechhhhhhhhhhcC----CCCCcccceEEEEEEccccccccccceeeEEeecccCCCcceEEEEE
Confidence 77788888899999999999999975432 12234456666665533 222111211 0001 1236668888
Q ss_pred cccccccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCH
Q 025645 159 RDEVWKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTK 200 (250)
Q Consensus 159 ~~~v~~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~ 200 (250)
...+.+..++.++||+-++ .+.+.+.+ +++++-||||.+.
T Consensus 139 AP~I~~vg~~V~vLa~l~~-~iVav~qg-n~LatsFHPELT~ 178 (194)
T COG0311 139 APVIEEVGDGVEVLATLDG-RIVAVKQG-NILATSFHPELTD 178 (194)
T ss_pred cceeehhcCcceEeeeeCC-EEEEEEeC-CEEEEecCccccC
Confidence 8888887779999999876 34455544 8999999999764
No 87
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.66 E-value=1.6e-14 Score=116.33 Aligned_cols=174 Identities=21% Similarity=0.286 Sum_probs=109.4
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCC-CcCEEEEcCCCCCCCCC--ChhH-
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLH-KYDGFVISGSPYDAYGN--DNWI- 81 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~-~~dglIi~Gg~~~~~~~--~~~~- 81 (250)
.+|||||.-.-...+ .+ ...+++.+|.+...+|..+.. +. ++|+||+|||.+ ..|. ..|+
T Consensus 2 ~~kvaVi~fpGtN~d--------~d-~~~A~~~aG~~~~~V~~~d~~------~~~~~d~vv~pGGFS-yGDyLr~Gaia 65 (231)
T COG0047 2 RPKVAVLRFPGTNCD--------YD-MAAAFERAGFEAEDVWHSDLL------LGRDFDGVVLPGGFS-YGDYLRAGAIA 65 (231)
T ss_pred CceEEEEEcCCcCch--------HH-HHHHHHHcCCCceEEEeeecc------cCCCccEEEEcCCCC-cccccCcchHH
Confidence 478999983322211 12 245777889999888865432 33 699999999953 2222 3444
Q ss_pred --HHHHHHHHHHHhcCCcEEEEehHHHHHHHH--cCceEEecCCC-ceeeEEEEEEecCCCCCCcccccCCCCCceEEEe
Q 025645 82 --LKLCFMLQTLDAMQKKVLGICFGHQVLCRA--LGGKVGKAYTG-WDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIME 156 (250)
Q Consensus 82 --~~~~~~i~~~~~~~~PilGIC~G~Qlla~a--~gg~v~~~~~~-~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~ 156 (250)
..+++-++++.+.++|+||||-|+|+|.++ +-|...++... ++..+..+++..+ ++++++++ .-.+.+.+.-
T Consensus 66 a~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F~cr~v~l~V~~~--~t~ft~~~-~~g~~i~ipV 142 (231)
T COG0047 66 AIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPGALTRNESLRFECRWVYLRVENN--NTPFTSGY-EGGEVIPIPV 142 (231)
T ss_pred hhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCcceecCCCCceEEEEEEEEEecC--CCHHHHhc-CCCceEEEEE
Confidence 456667777778999999999999999975 55777776542 3455666666543 45555552 0125688888
Q ss_pred eeccccc--------ccCCccEEE-EEcC-----------CCc---eEEEEEC-CcEEEEecCCCC
Q 025645 157 CHRDEVW--------KVPIGAEVI-GFSD-----------KTG---VEMFTIG-DHILGIQGHPEY 198 (250)
Q Consensus 157 ~H~~~v~--------~lp~~~~~l-a~s~-----------~~~---v~~~~~~-~~~~g~QfHPE~ 198 (250)
.|.+.=. ++-.+-+++ -+.+ ++. +.++..+ ++++|+..|||.
T Consensus 143 AHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~IaGI~n~~G~V~gmMPHPER 208 (231)
T COG0047 143 AHGEGRYYADDETLAELEENGQVVFRYVDNNGETEEYANPNGSVNGIAGITNEDGNVLGMMPHPER 208 (231)
T ss_pred eecceeEEccHHHHHHHhhCCeEEEEEecCCCceeeeeCCCCChhhceeEEcCCCCEEEecCCchh
Confidence 8876521 122222233 2222 222 5566654 489999999993
No 88
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.65 E-value=1.2e-15 Score=128.62 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=112.7
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHH
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVL 108 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qll 108 (250)
.++..+|+..|.++..+. .+.++.+.|-+|+|| |.....-+.-....+.+-+++..+.++|++|||.|.|+|
T Consensus 15 ~si~nal~hlg~~i~~v~-------~P~DI~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaL 87 (541)
T KOG0623|consen 15 RSIRNALRHLGFSIKDVQ-------TPGDILNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQAL 87 (541)
T ss_pred HHHHHHHHhcCceeeecc-------CchhhccCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHH
Confidence 457789999999887765 455688899999998 433322222223456778888889999999999999999
Q ss_pred HHH------------cCceEEecC----CCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccc----cC-C
Q 025645 109 CRA------------LGGKVGKAY----TGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWK----VP-I 167 (250)
Q Consensus 109 a~a------------~gg~v~~~~----~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~----lp-~ 167 (250)
... +.|.+.+.. ..+++||+.+.+.. .+.+|+. . ..-.+|+.|++...+ ++ +
T Consensus 88 F~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~s---d~effg~---~-p~~~~YFVHSyl~~ek~~~len~ 160 (541)
T KOG0623|consen 88 FDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVGS---DSEFFGD---V-PNRHVYFVHSYLNREKPKSLENK 160 (541)
T ss_pred hcccccCCCcCcccccccceecccCCCCcCCcccccccccCC---ccccccc---C-CCceEEEEeeecccccccCCCCC
Confidence 752 123444432 23789999988763 4566665 3 456789999996543 33 3
Q ss_pred ccEEEEEcCCCc---eEEEEECCcEEEEecCCC----CCHHHHHHHHHH
Q 025645 168 GAEVIGFSDKTG---VEMFTIGDHILGIQGHPE----YTKDILYNLIDR 209 (250)
Q Consensus 168 ~~~~la~s~~~~---v~~~~~~~~~~g~QfHPE----~~~~~~~~~~~~ 209 (250)
++++ |+...+. +.+++ +++++++||||| .+...+++|+..
T Consensus 161 ~wki-at~kYG~E~Fi~ai~-knN~~AtQFHPEKSG~aGL~vl~~FL~~ 207 (541)
T KOG0623|consen 161 DWKI-ATCKYGSESFISAIR-KNNVHATQFHPEKSGEAGLSVLRRFLHQ 207 (541)
T ss_pred CceE-eeeccCcHHHHHHHh-cCceeeEecccccccchhHHHHHHHHhc
Confidence 4554 5544332 33444 557999999999 456788888874
No 89
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.64 E-value=2.6e-15 Score=125.42 Aligned_cols=163 Identities=21% Similarity=0.237 Sum_probs=102.1
Q ss_pred HHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCC----hhHHH--HHHHHHHHHhcCCcEEEEehHH
Q 025645 32 FVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGND----NWILK--LCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~----~~~~~--~~~~i~~~~~~~~PilGIC~G~ 105 (250)
+.++|+++|.++.++++... .....+++++|+||||||+... +.. .|... +.++++.+.+.++|+||||.|+
T Consensus 15 ~~~al~~aG~~v~~v~~~~~-~~~~~~l~~~d~liipGG~~~~-d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~ 92 (238)
T cd01740 15 MAYAFELAGFEAEDVWHNDL-LAGRKDLDDYDGVVLPGGFSYG-DYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGF 92 (238)
T ss_pred HHHHHHHcCCCEEEEeccCC-ccccCCHhhCCEEEECCCCCcc-cccccccccccChhHHHHHHHHHhCCCeEEEECcHH
Confidence 46788889999988876432 2222357889999999997421 211 12222 7788899999999999999999
Q ss_pred HHHHHH--cCceEEecCCCcee-e----EEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc--------ccCCccE
Q 025645 106 QVLCRA--LGGKVGKAYTGWDI-G----LRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW--------KVPIGAE 170 (250)
Q Consensus 106 Qlla~a--~gg~v~~~~~~~~~-g----~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~--------~lp~~~~ 170 (250)
|+|+.+ ++|++.+++..... . +..+++.. ..+.+++.+ ..+..+.++..|++.=. ++-+.-+
T Consensus 93 QlL~~~gll~g~~~~~~~~~~~~~~~~~~v~~~v~~--~~si~t~~~-~~g~~l~~~vaHgeG~~~~~~~~~~~l~~~~~ 169 (238)
T cd01740 93 QILVELGLLPGALIRNKGLKFICRWQNRFVTLRVEN--NDSPFTKGY-MEGEVLRIPVAHGEGRFYADDETLAELEENGQ 169 (238)
T ss_pred HHHHHcCCCccccccCCCCceeccccCceEEEEEcC--CCCceecCC-CCCCEEEEEeECCceeeEcCHHHHHHHHHCCC
Confidence 999998 88888766543221 1 14444432 245555531 02357888999987411 1111111
Q ss_pred EEEE-------------cCCC---ceEEEEEC-CcEEEEecCCCCC
Q 025645 171 VIGF-------------SDKT---GVEMFTIG-DHILGIQGHPEYT 199 (250)
Q Consensus 171 ~la~-------------s~~~---~v~~~~~~-~~~~g~QfHPE~~ 199 (250)
+.-+ +.++ .|+++..+ ++++|...|||..
T Consensus 170 i~~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~GrvlglMphPer~ 215 (238)
T cd01740 170 IAQYVDDDGNVTERYPANPNGSLDGIAGICNEDGRVLGMMPHPERA 215 (238)
T ss_pred EEEEEcCCCCccccCCCCCCCChhcceEEEcCCCCEEEEcCChHHc
Confidence 1111 2222 26777765 4899999999944
No 90
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=99.53 E-value=2.9e-13 Score=110.05 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=135.6
Q ss_pred ccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC--------------C--CCCCcCEEE
Q 025645 3 LMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF--------------N--DLHKYDGFV 66 (250)
Q Consensus 3 ~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--------------~--~l~~~dglI 66 (250)
+.++++|+||+.++.+-. ....+.++|.....++++.-+..+..... + .-.++||+|
T Consensus 32 dIRPL~IlilNLMP~Ki~-------TE~Q~lRLL~nsPLQV~itll~~~sh~~KnTp~eHl~~FY~tfeeVk~~~FDG~I 104 (307)
T COG1897 32 DIRPLKILILNLMPKKIE-------TETQILRLLGNSPLQVDITLLRIDSHESKNTPAEHLNSFYCTFEEVKDQKFDGLI 104 (307)
T ss_pred CCccceeeeeecCchhHH-------HHHHHHHHhcCCCceEEEEEEEecCcCCCCCcHHHHHHHhhcHHHHhhcccCceE
Confidence 457889999999887642 23557788877777666543332211110 0 125799999
Q ss_pred EcCCCCC--CCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccc
Q 025645 67 ISGSPYD--AYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLED 144 (250)
Q Consensus 67 i~Gg~~~--~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~ 144 (250)
|+|.|.. .+++..|+..+.+++.+...+-.-.|-||||.|.--.++-|--+.....+-.|+++-+... ..+.+++|
T Consensus 105 iTGAPve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~Kl~GVy~h~~l~--p~~~l~rG 182 (307)
T COG1897 105 ITGAPVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPEKLSGVYKHDILS--PHSLLTRG 182 (307)
T ss_pred EeCCcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccchhhhceeeccccC--ccchhhcc
Confidence 9999964 5677788999999999998888899999999999877766654433334578888777553 25678888
Q ss_pred cCCCCCceEEEeeecccccc----cCCccEEEEEcCCCceEEEEECC-cEEEEecCCCCCHHHHH
Q 025645 145 LGEIPGSLSIMECHRDEVWK----VPIGAEVIGFSDKTGVEMFTIGD-HILGIQGHPEYTKDILY 204 (250)
Q Consensus 145 ~~~l~~~~~~~~~H~~~v~~----lp~~~~~la~s~~~~v~~~~~~~-~~~g~QfHPE~~~~~~~ 204 (250)
+.+.|.+.++..-.+.. --+++++|+.|+...+..+..++ +.+-+-+|||++...+.
T Consensus 183 ---fdd~f~~PhSR~t~~~~e~i~~~~~LeIL~es~e~G~~l~a~k~~r~ifv~gH~EYD~~tL~ 244 (307)
T COG1897 183 ---FDDSFLAPHSRYTDVPKEDILAVPDLEILAESKEAGVYLLASKDGRNIFVTGHPEYDATTLA 244 (307)
T ss_pred ---CCccccCcccccccCCHHHHhhCCCceeeecccccceEEEecCCCCeEEEeCCcchhhhHHH
Confidence 77888888776655531 23469999999988877776554 55666789999987654
No 91
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.39 E-value=9.8e-12 Score=104.46 Aligned_cols=177 Identities=20% Similarity=0.287 Sum_probs=100.8
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCC--CCCCC-hhHH-
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYD--AYGND-NWIL- 82 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~--~~~~~-~~~~- 82 (250)
.|++|+...-... ..-...+|+.+|.++..+++.+ -......++++|+|+||||..- ..... -|..
T Consensus 2 pkV~Vl~~pGtNc---------e~e~~~A~~~aG~~~~~v~~~d-l~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~ 71 (259)
T PF13507_consen 2 PKVAVLRFPGTNC---------ERETAAAFENAGFEPEIVHIND-LLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAAR 71 (259)
T ss_dssp -EEEEEE-TTEEE---------HHHHHHHHHCTT-EEEEEECCH-HHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHH
T ss_pred CEEEEEECCCCCC---------HHHHHHHHHHcCCCceEEEEEe-cccccCchhhCcEEEECCccCccccchHHHHHHHH
Confidence 5889987332211 1124678999999998876532 1123346889999999998642 21111 2222
Q ss_pred -----HHHHHHHHHHhc-CCcEEEEehHHHHHHHH--cCc----------eEEecCCC-ceeeEEEEEEecCCCCCCccc
Q 025645 83 -----KLCFMLQTLDAM-QKKVLGICFGHQVLCRA--LGG----------KVGKAYTG-WDIGLRRVRIVNDLAPCSFLE 143 (250)
Q Consensus 83 -----~~~~~i~~~~~~-~~PilGIC~G~Qlla~a--~gg----------~v~~~~~~-~~~g~~~i~~~~~~~~~~l~~ 143 (250)
.+.+.++++.++ ++++||||-|+|+|.+. +.+ .+.++..+ ++..|..+.+..+ ..+-+++
T Consensus 72 ~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~~~~~~~~~~~L~~N~s~~fe~rwv~~~v~~~-s~~~~~~ 150 (259)
T PF13507_consen 72 LLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGGEIKDSEQSPALTPNASGRFESRWVNLVVNEN-SPSIFLR 150 (259)
T ss_dssp HCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT------TT--EEE--TTSS-EEEEEEEEE--S-STTCCCT
T ss_pred hhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCccccccCCCcEEcCCCCCCeEEEEEEEEEecC-CcceecC
Confidence 246777777787 99999999999999885 555 56666543 5667777755333 2333334
Q ss_pred ccCCCCCceEEEeeecccccc---------cCC-ccEEEEEcCC----------------CceEEEEEC-CcEEEEecCC
Q 025645 144 DLGEIPGSLSIMECHRDEVWK---------VPI-GAEVIGFSDK----------------TGVEMFTIG-DHILGIQGHP 196 (250)
Q Consensus 144 ~~~~l~~~~~~~~~H~~~v~~---------lp~-~~~~la~s~~----------------~~v~~~~~~-~~~~g~QfHP 196 (250)
+ + +.+.++..|++.=.. +-+ +..++.+.+. ..|+++... ++++|...||
T Consensus 151 ~---~-~~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NPNGS~~~IAGics~~GrvlglMpHP 226 (259)
T PF13507_consen 151 G---L-EGIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNPNGSVNNIAGICSPDGRVLGLMPHP 226 (259)
T ss_dssp T---T-TCEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSSS--GGGEEEEE-TTSSEEEESSBC
T ss_pred C---C-CEEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCCCCCccceeEEEcCCCCEEEEcCCh
Confidence 4 3 567777888765221 222 3333333321 337888875 4899999999
Q ss_pred CC
Q 025645 197 EY 198 (250)
Q Consensus 197 E~ 198 (250)
|.
T Consensus 227 Er 228 (259)
T PF13507_consen 227 ER 228 (259)
T ss_dssp CG
T ss_pred HH
Confidence 93
No 92
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=99.35 E-value=3.3e-11 Score=97.99 Aligned_cols=159 Identities=15% Similarity=0.164 Sum_probs=94.1
Q ss_pred HHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCC-CCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 33 VAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAY-GNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 33 ~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~-~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
.+.|++.|+++.++... .++.+.++|+||||||..... +.......+.+.|+++.+.++||+|||.|+|+|++.
T Consensus 17 ~~~l~~~G~~v~~~s~~-----~~~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~ 91 (198)
T cd03130 17 LELLEAAGAELVPFSPL-----KDEELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGES 91 (198)
T ss_pred HHHHHHCCCEEEEECCC-----CCCCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHH
Confidence 35778899988777532 123455699999999854321 111111346788888888899999999999999986
Q ss_pred c----C----------ceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccccCCc----cEEEE
Q 025645 112 L----G----------GKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVPIG----AEVIG 173 (250)
Q Consensus 112 ~----g----------g~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~lp~~----~~~la 173 (250)
+ | +++...++ .++|+..++... .+++.. -...+.-+.+|.-... ..+. +.+..
T Consensus 92 ~~d~~g~~~~glGll~~~~~~~~~-~~~g~~~~~~~~---~~~~~~----~g~~v~G~E~H~g~t~-~~~~~~~~~~~~~ 162 (198)
T cd03130 92 LDDEEGQSYPMAGVLPGDARMTKR-LGLGYREAEALG---DTLLGK----KGTTLRGHEFHYSRLE-PPPEPDFAATVRR 162 (198)
T ss_pred hhccCCCEeccccccceeeEEcCC-CcccCEEEEeec---CccccC----CCCEEEEEeccCcEee-cCCCcceEEEecc
Confidence 5 2 23344333 378888777652 223221 1245788888876543 1211 12221
Q ss_pred E-cCCCceEEEEECCcEEEEecCCCCC--HHHHHHH
Q 025645 174 F-SDKTGVEMFTIGDHILGIQGHPEYT--KDILYNL 206 (250)
Q Consensus 174 ~-s~~~~v~~~~~~~~~~g~QfHPE~~--~~~~~~~ 206 (250)
. .......++.. ++++|+-.|=-+. +.+.+.|
T Consensus 163 ~~~~~~~~dG~~~-~nv~gtY~Hg~f~~n~~~~~~~ 197 (198)
T cd03130 163 GRGIDGGEDGYVY-GNVLASYLHLHWASNPDLAERF 197 (198)
T ss_pred CCCCCCcccEEEE-CCEEEEEeeeecccCHHHHHHh
Confidence 1 11112245665 4699998885543 4444443
No 93
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=99.35 E-value=4.5e-12 Score=96.94 Aligned_cols=161 Identities=18% Similarity=0.143 Sum_probs=85.6
Q ss_pred HHHHHHHHhcC--CCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcC-CcEEEEehHH
Q 025645 29 FNVFVAAFGEE--GERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQ-KKVLGICFGH 105 (250)
Q Consensus 29 ~~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~-~PilGIC~G~ 105 (250)
.+.+.+.+.+. ++++++..+. .+++++++||+|||||......-..-..+++.-+..+...+ +|+||.|.||
T Consensus 27 ~N~~~~c~~en~y~Ik~~~~tVK-----T~~D~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGm 101 (226)
T KOG3210|consen 27 VNHVEKCIVENRYEIKLSVMTVK-----TKNDLAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGM 101 (226)
T ss_pred HHHHHHhhccCcceEEEEEEeec-----CHHHHhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhh
Confidence 34455555555 4555555443 44578999999999998755433332334444455555544 9999999999
Q ss_pred HHHHHHcCceEEecCCCceeeEEEEEEecC--CCC------CCcccccCCCC--CceEEEeeecccccccCCcc--EEEE
Q 025645 106 QVLCRALGGKVGKAYTGWDIGLRRVRIVND--LAP------CSFLEDLGEIP--GSLSIMECHRDEVWKVPIGA--EVIG 173 (250)
Q Consensus 106 Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~--~~~------~~l~~~~~~l~--~~~~~~~~H~~~v~~lp~~~--~~la 173 (250)
-+|..-+.+.-. .+ +-.+.-.|.+..+ +++ .--|+++ .| ..|.+.+.....+..+=+.. ..+.
T Consensus 102 I~LS~ql~nek~-~~--~tL~~lkv~V~RN~FG~QaqSFT~~~~~snf--i~~~~~FpATFIRAPVie~ILD~I~V~~l~ 176 (226)
T KOG3210|consen 102 IYLSQQLSNEKK-LV--KTLNLLKVKVKRNAFGRQAQSFTRICDFSNF--IPHCNDFPATFIRAPVIEEILDPIHVQVLY 176 (226)
T ss_pred hhhhhhhcCCcc-hh--hhhhheeEEEeeccccchhhhheehhccccc--ccCcccCchhheechhHHHhcCchhheEEE
Confidence 999876543211 11 1122222322211 111 0111221 11 23444444444443332333 3333
Q ss_pred EcCC---CceEEEEECCcEEEEecCCCCC
Q 025645 174 FSDK---TGVEMFTIGDHILGIQGHPEYT 199 (250)
Q Consensus 174 ~s~~---~~v~~~~~~~~~~g~QfHPE~~ 199 (250)
.-+. ..+.|...+++++++.||||..
T Consensus 177 ~~~~nG~~~iVAa~Q~~~iL~TSFHPELa 205 (226)
T KOG3210|consen 177 KLDGNGQELIVAAKQKNNILATSFHPELA 205 (226)
T ss_pred EecCCCcEEEEEEeccCCEeeeecChhhh
Confidence 3331 1255666677999999999965
No 94
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.24 E-value=2.3e-10 Score=103.93 Aligned_cols=81 Identities=17% Similarity=0.339 Sum_probs=51.7
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCC-ceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGE-RWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
|||+||..... .+.++..|. .+.++++. +++++.++|+||||||.... ...+...+.
T Consensus 1 m~iGvlal~sv---------------~~al~~lg~~~~~vv~~~-----~~~~l~~~D~lILPGG~~~~--~~~l~~~l~ 58 (476)
T PRK06278 1 MEIGLLDIKGS---------------LPCFENFGNLPTKIIDEN-----NIKEIKDLDGLIIPGGSLVE--SGSLTDELK 58 (476)
T ss_pred CEEEEEehhhH---------------HHHHHHhcCCCcEEEEeC-----ChHHhccCCEEEECCCchhh--cchHHHHHH
Confidence 47999975443 234555554 55554432 34567899999999985221 111233444
Q ss_pred HHHHHHHhcCCcEEEEehHHHHHHHHc
Q 025645 86 FMLQTLDAMQKKVLGICFGHQVLCRAL 112 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Qlla~a~ 112 (250)
+.++ +.++||||||.|+|+|++..
T Consensus 59 ~~i~---~~g~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 59 KEIL---NFDGYIIGICSGFQILSEKI 82 (476)
T ss_pred HHHH---HcCCeEEEEcHHHHhccccc
Confidence 4343 33899999999999999875
No 95
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=99.22 E-value=3e-11 Score=97.87 Aligned_cols=75 Identities=24% Similarity=0.278 Sum_probs=58.5
Q ss_pred HHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhH--HHHHHHHHHHHhcCCcEEEEehHHHHH
Q 025645 31 VFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWI--LKLCFMLQTLDAMQKKVLGICFGHQVL 108 (250)
Q Consensus 31 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~--~~~~~~i~~~~~~~~PilGIC~G~Qll 108 (250)
.+.++++..|+++++++... ++.++|+||||||.. ...+..|. ..+.+.|+++.+.++||||||.|+|+|
T Consensus 14 ~l~~~~~~~G~~~~~~~~~~-------~~~~~d~lilpGg~~-~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL 85 (194)
T cd01750 14 DLDPLAREPGVDVRYVEVPE-------GLGDADLIILPGSKD-TIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQML 85 (194)
T ss_pred HHHHHHhcCCceEEEEeCCC-------CCCCCCEEEECCCcc-hHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHh
Confidence 46788999999998887432 256799999999973 32344452 347788888888999999999999999
Q ss_pred HHHcC
Q 025645 109 CRALG 113 (250)
Q Consensus 109 a~a~g 113 (250)
++.+.
T Consensus 86 ~~~~~ 90 (194)
T cd01750 86 GKYIV 90 (194)
T ss_pred hhhcc
Confidence 99873
No 96
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.16 E-value=2.3e-09 Score=106.16 Aligned_cols=182 Identities=20% Similarity=0.263 Sum_probs=109.1
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC--------CCCCCCcCEEEEcCCCC--CC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD--------FNDLHKYDGFVISGSPY--DA 74 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~--------~~~l~~~dglIi~Gg~~--~~ 74 (250)
.++|++|+...-.+.+ .-...+|+.+|.++..+++..-.... ...|+++++|++|||.+ +.
T Consensus 976 ~kpkvaIl~~pGtNce---------~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~ 1046 (1239)
T TIGR01857 976 EKPRVVIPVFPGTNSE---------YDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDE 1046 (1239)
T ss_pred CCCeEEEEECCCCCCH---------HHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccc
Confidence 3579999983322211 11356777899887777654311000 13578999999999953 22
Q ss_pred CCC-ChhH------HHHHHHHHHHHhcCCcEEEEehHHHHHHHH--c--Cc---------eEEecCC-CceeeEEEEEEe
Q 025645 75 YGN-DNWI------LKLCFMLQTLDAMQKKVLGICFGHQVLCRA--L--GG---------KVGKAYT-GWDIGLRRVRIV 133 (250)
Q Consensus 75 ~~~-~~~~------~~~~~~i~~~~~~~~PilGIC~G~Qlla~a--~--gg---------~v~~~~~-~~~~g~~~i~~~ 133 (250)
.+. ..|+ ..+++.++.+.+.+.++||||.|+|+|... + |. ...++.. .++..|..+++.
T Consensus 1047 l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~~~p~l~~N~s~rf~~r~v~~~v~ 1126 (1239)
T TIGR01857 1047 PDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAANETSPTLTYNDINRHVSKIVRTRIA 1126 (1239)
T ss_pred cchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCccccccccCCceeeecCCCCeEEeeeEEEEC
Confidence 211 1342 345666777777899999999999999885 1 21 3344432 245566677765
Q ss_pred cCCCCCCcccccCCCCCceEEEeeecccccccC---------CccEEEEE-------------cCCCc---eEEEEEC-C
Q 025645 134 NDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVP---------IGAEVIGF-------------SDKTG---VEMFTIG-D 187 (250)
Q Consensus 134 ~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~lp---------~~~~~la~-------------s~~~~---v~~~~~~-~ 187 (250)
. ..++++.++. ..+.+.++..|+..=...+ .+..++-+ ++++. ++++... +
T Consensus 1127 ~--~~s~~~~~~~-~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~NPNGS~~~IaGi~s~dG 1203 (1239)
T TIGR01857 1127 S--TNSPWLSGVS-VGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKYNPNGSSLAIEGITSPDG 1203 (1239)
T ss_pred C--CCChhHhcCC-CCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCCCCCChhhhhEeECCCC
Confidence 4 3667776520 1256888899987632111 12222222 22222 5666664 5
Q ss_pred cEEEEecCCCC
Q 025645 188 HILGIQGHPEY 198 (250)
Q Consensus 188 ~~~g~QfHPE~ 198 (250)
+++|...|||.
T Consensus 1204 rvlg~MpHpER 1214 (1239)
T TIGR01857 1204 RIFGKMGHSER 1214 (1239)
T ss_pred CEEEECCCccc
Confidence 89999999993
No 97
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.02 E-value=1.3e-08 Score=91.58 Aligned_cols=178 Identities=18% Similarity=0.105 Sum_probs=106.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHH--H
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILK--L 84 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~--~ 84 (250)
.||||--+.-...+ |.+++ +.|++. +++..+....+ +.+.++|+|+|+||....++ .+... .
T Consensus 234 ~~iavA~D~AF~Fy-------Y~enl-~~L~~~-aelv~fSPl~~-----~~lp~~D~l~lpGG~~e~~~--~~L~~n~~ 297 (433)
T PRK13896 234 PTVAVARDAAFCFR-------YPATI-ERLRER-ADVVTFSPVAG-----DPLPDCDGVYLPGGYPELHA--DALADSPA 297 (433)
T ss_pred CeEEEEEcCcccee-------CHHHH-HHHHhc-CcEEEEcCCCC-----CCCCCCCEEEeCCCchhhHH--HHHHhCCc
Confidence 58999887666654 44443 467777 78877764322 23457899999999754432 33322 3
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHc---Cce-----------EEecCCCceeeEEEEEEecCCCCCCcccccCCCCC
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRAL---GGK-----------VGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPG 150 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~---gg~-----------v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~ 150 (250)
.+-|+.+.+.++||+|||.|+|+|++.+ .|+ +.-.++....|...++... +.++.. -..
T Consensus 298 ~~~i~~~~~~G~pi~aeCGG~q~L~~~i~d~eG~~~~m~Gllp~~t~m~~r~~~lGy~~~~~~~----~~~~~~---~G~ 370 (433)
T PRK13896 298 LDELADRAADGLPVLGECGGLMALAESLTTTDGDTHEMAGVLPADVTMQDRYQALDHVELRATD----DTLTAG---AGE 370 (433)
T ss_pred HHHHHHHHHCCCcEEEEehHHHHhhccccCCCCCEecccceeeEEEEEccceeEEEeEEEEEcc----CccccC---CCC
Confidence 4667777788999999999999999976 222 1111111234554444432 122221 125
Q ss_pred ceEEEeeecccccccCCccEEEEEcCCC-----ceEEEEECCcEEEEecCCCCCHHHHHHHHHH
Q 025645 151 SLSIMECHRDEVWKVPIGAEVIGFSDKT-----GVEMFTIGDHILGIQGHPEYTKDILYNLIDR 209 (250)
Q Consensus 151 ~~~~~~~H~~~v~~lp~~~~~la~s~~~-----~v~~~~~~~~~~g~QfHPE~~~~~~~~~~~~ 209 (250)
.++-+.+|...+. .+.+...+.....+ ...++..+ +++|.-.|-=+....+++|++.
T Consensus 371 ~i~GhEfHys~~~-~~~~~~~~~~~~~g~g~~~~~dG~~~~-nv~asY~H~hf~~~~~~~f~~~ 432 (433)
T PRK13896 371 TLRGHEFHYSSAT-VGSDARFAFDVERGDGIDGEHDGLTEY-RTLGTYAHVHPESGAFDRFLEA 432 (433)
T ss_pred eEEEEeeeCeEEE-CCCCCceEEEeccCCCCCCcccEEEEC-CEEEEehhhcCCchHHHHHHhh
Confidence 6888899977654 33221212211111 12566654 6999988988766677777653
No 98
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.01 E-value=1.5e-08 Score=102.00 Aligned_cols=179 Identities=17% Similarity=0.254 Sum_probs=109.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCC----hhH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGND----NWI 81 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~----~~~ 81 (250)
++|++|+...-.+.+ .-...+|+.+|.++..+++.+ -......|+++++|++|||.. ..|.. .|.
T Consensus 1035 ~pkv~il~~pG~N~~---------~e~~~Af~~aG~~~~~v~~~d-l~~~~~~l~~~~~l~~~GGFS-~gD~lgsg~~~a 1103 (1290)
T PRK05297 1035 RPKVAILREQGVNSH---------VEMAAAFDRAGFDAIDVHMSD-LLAGRVTLEDFKGLVACGGFS-YGDVLGAGEGWA 1103 (1290)
T ss_pred CCeEEEEECCCCCCH---------HHHHHHHHHcCCCeEEEEeec-CcCCCCChhhCcEEEECCccC-CcccchHHHHHH
Confidence 468999983322211 113568889999887666442 111223588999999999953 22222 244
Q ss_pred H------HHHHHHHHHH-hcCCcEEEEehHHHHHHHHc---Cc-----eEEecCC-CceeeEEEEEEecCCCCCCccccc
Q 025645 82 L------KLCFMLQTLD-AMQKKVLGICFGHQVLCRAL---GG-----KVGKAYT-GWDIGLRRVRIVNDLAPCSFLEDL 145 (250)
Q Consensus 82 ~------~~~~~i~~~~-~~~~PilGIC~G~Qlla~a~---gg-----~v~~~~~-~~~~g~~~i~~~~~~~~~~l~~~~ 145 (250)
. .+++.++.+. +.+.++||||.|+|+|...- -+ .+.++.. .++..|..+++.. ..+++|+++
T Consensus 1104 ~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~~~~~p~l~~N~s~rfesr~~~~~v~~--~~s~~~~~~ 1181 (1290)
T PRK05297 1104 KSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPGAEHWPRFVRNRSEQFEARFSLVEVQE--SPSIFLQGM 1181 (1290)
T ss_pred HHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCCCCCCCeEeecCCCCeEEeeeEEEECC--CCChhHhhc
Confidence 3 3456666644 67899999999999999861 11 2444433 2556677777764 367778763
Q ss_pred CCCCCceEEEeeecccccccC---------CccEEEEE-------------cCCC---ceEEEEEC-CcEEEEecCCCCC
Q 025645 146 GEIPGSLSIMECHRDEVWKVP---------IGAEVIGF-------------SDKT---GVEMFTIG-DHILGIQGHPEYT 199 (250)
Q Consensus 146 ~~l~~~~~~~~~H~~~v~~lp---------~~~~~la~-------------s~~~---~v~~~~~~-~~~~g~QfHPE~~ 199 (250)
. ...+.++..|++.=...+ .+...+-+ +.++ .++++... ++++|...|||..
T Consensus 1182 ~--g~~l~~~vaHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGrvlglMpHPEr~ 1259 (1290)
T PRK05297 1182 A--GSRLPIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPANPNGSPNGITGLTTADGRVTIMMPHPERV 1259 (1290)
T ss_pred C--CCEEEEEEEcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCCCCCChhcceEeECCCCCEEEEcCChHHh
Confidence 1 255778888886522111 12222222 2222 26777764 4899999999954
No 99
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.00 E-value=3.1e-08 Score=90.27 Aligned_cols=183 Identities=16% Similarity=0.139 Sum_probs=103.0
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCC-CChhHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYG-NDNWILKLC 85 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~-~~~~~~~~~ 85 (250)
.||||.-+.-...+ |.+.+ +.|++.|+++..+... .++.+.++|+||||||....++ .......+.
T Consensus 246 ~~iava~d~af~f~-------y~e~~-~~L~~~g~~~~~~~~~-----~~~~l~~~D~lilpGG~~~~~~~~l~~~~~~~ 312 (451)
T PRK01077 246 VRIAVARDAAFNFY-------YPENL-ELLRAAGAELVFFSPL-----ADEALPDCDGLYLGGGYPELFAAELAANTSMR 312 (451)
T ss_pred ceEEEEecCccccc-------HHHHH-HHHHHCCCEEEEeCCc-----CCCCCCCCCEEEeCCCchhhHHHHHhhCchhH
Confidence 58999976644432 33333 5677889888776532 1223567999999999643221 111123467
Q ss_pred HHHHHHHhcCCcEEEEehHHHHHHHHcC---ceEEec----------CCCc-eeeEEEEEEecCCCCCCcccccCCCCCc
Q 025645 86 FMLQTLDAMQKKVLGICFGHQVLCRALG---GKVGKA----------YTGW-DIGLRRVRIVNDLAPCSFLEDLGEIPGS 151 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Qlla~a~g---g~v~~~----------~~~~-~~g~~~i~~~~~~~~~~l~~~~~~l~~~ 151 (250)
+.|+++.+.++||+|||.|+|+|+..+- |..... .... ..|....+... +..+.. -...
T Consensus 313 ~~i~~~~~~g~~i~aiCgG~~~L~~~i~d~~g~~~~~lGll~~~t~~~~~~~~~g~~~~~~~~----~~~~~~---~g~~ 385 (451)
T PRK01077 313 ASIRAAAAAGKPIYAECGGLMYLGESLEDADGERHPMVGLLPGEASMTKRLQALGYREAEALE----DTLLGK---AGER 385 (451)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHHhhhcCCCCCeeecccccceeEEEcCCcccccceEEEeec----CCcCCC---CCCE
Confidence 8888888899999999999999999872 211110 0111 23333333221 111111 1245
Q ss_pred eEEEeeecccccccC--CccEEEE-EcCCCceEEEEECCcEEEEecCCCC--CHHHHHHHHHHH
Q 025645 152 LSIMECHRDEVWKVP--IGAEVIG-FSDKTGVEMFTIGDHILGIQGHPEY--TKDILYNLIDRL 210 (250)
Q Consensus 152 ~~~~~~H~~~v~~lp--~~~~~la-~s~~~~v~~~~~~~~~~g~QfHPE~--~~~~~~~~~~~~ 210 (250)
+.-+.+|......-+ +-+.+.. ......-.++.. ++++|.-.|.-+ .+.+.+.|++..
T Consensus 386 i~G~E~H~g~~~~~~~~~~~~~~~~~g~~~~~dG~~~-~nv~gtY~H~~f~~n~~~~~~~l~~~ 448 (451)
T PRK01077 386 LRGHEFHYSTLETPEEAPLYRVRDADGRPLGEEGYRR-GNVLASYLHLHFASNPDAAARFLAAC 448 (451)
T ss_pred EEEECCCceEeeCCCCCccEEEEeCCCCCCcCCeEEe-CCEEEEEeEeecccCHHHHHHHHHHH
Confidence 778888876532111 1122211 111101145554 479999999987 456777777654
No 100
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.99 E-value=2.3e-08 Score=99.99 Aligned_cols=181 Identities=17% Similarity=0.248 Sum_probs=108.4
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCC--CCCCCC-hhH
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPY--DAYGND-NWI 81 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~--~~~~~~-~~~ 81 (250)
.++|++|+...-.+.+ .-...+|+.+|.++..+++.+ -......|+++++|+++||.. +..+.. -|.
T Consensus 1036 ~~pkVaVl~~pGtN~~---------~e~~~Af~~aGf~~~~V~~~d-l~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa 1105 (1307)
T PLN03206 1036 SKPKVAIIREEGSNGD---------REMAAAFYAAGFEPWDVTMSD-LLNGRISLDDFRGIVFVGGFSYADVLDSAKGWA 1105 (1307)
T ss_pred CCCeEEEEECCCCCCH---------HHHHHHHHHcCCceEEEEeee-cccccccccceeEEEEcCcCCCccccchHHHHH
Confidence 3578999983322211 113568888998886666432 111234578999999999963 222221 333
Q ss_pred ------HHHHHHHHHHH-hcCCcEEEEehHHHHHHHH--c-Cce---------------EEecC-CCceeeEEEEEEecC
Q 025645 82 ------LKLCFMLQTLD-AMQKKVLGICFGHQVLCRA--L-GGK---------------VGKAY-TGWDIGLRRVRIVND 135 (250)
Q Consensus 82 ------~~~~~~i~~~~-~~~~PilGIC~G~Qlla~a--~-gg~---------------v~~~~-~~~~~g~~~i~~~~~ 135 (250)
..+++.++.+. +.+.++||||.|+|+|... + |+. ..++. ..++..|..+++.+
T Consensus 1106 ~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~~~~~~~~~~~e~~p~l~~N~s~rfesr~v~v~V~~- 1184 (1307)
T PLN03206 1106 GSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQVGGGLGAGGDPSQPRFVHNESGRFECRFTSVTIED- 1184 (1307)
T ss_pred HHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCccccccccccccCCceeeecCCCCeEEeceEEEECC-
Confidence 34566666666 4589999999999999885 1 121 22332 22456677777753
Q ss_pred CCCCCcccccCCCCCceEEEeeecccccccC----------CccEEEEE-------------cCCC---ceEEEEEC-Cc
Q 025645 136 LAPCSFLEDLGEIPGSLSIMECHRDEVWKVP----------IGAEVIGF-------------SDKT---GVEMFTIG-DH 188 (250)
Q Consensus 136 ~~~~~l~~~~~~l~~~~~~~~~H~~~v~~lp----------~~~~~la~-------------s~~~---~v~~~~~~-~~ 188 (250)
..+.+++++. ...+.++..|++.=...+ .+...+-+ +.++ .++++... ++
T Consensus 1185 -s~si~l~~~~--G~~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~~yP~NPNGS~~~IAGi~s~dGR 1261 (1307)
T PLN03206 1185 -SPAIMLKGME--GSTLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQYPFNPNGSPLGIAALCSPDGR 1261 (1307)
T ss_pred -CCChhhcccC--CCEEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccCCCCCCCCCChhhceeeECCCCC
Confidence 3667776631 245778888886531111 12222222 2222 26677764 48
Q ss_pred EEEEecCCCCC
Q 025645 189 ILGIQGHPEYT 199 (250)
Q Consensus 189 ~~g~QfHPE~~ 199 (250)
++|...|||..
T Consensus 1262 vlgmMpHPER~ 1272 (1307)
T PLN03206 1262 HLAMMPHPERC 1272 (1307)
T ss_pred EEEEcCCHHHh
Confidence 99999999954
No 101
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.95 E-value=3e-08 Score=99.60 Aligned_cols=180 Identities=18% Similarity=0.275 Sum_probs=108.5
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCC--CCCCCC-hhH-
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPY--DAYGND-NWI- 81 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~--~~~~~~-~~~- 81 (250)
++|+|||...-.+.+ .-...+|+.+|.++..++..+- ......|+++++|+++||.. +..... .|.
T Consensus 1055 ~p~vail~~pG~N~~---------~e~~~Af~~aGf~~~~v~~~dl-~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~ 1124 (1310)
T TIGR01735 1055 RPKVAILREQGVNGD---------REMAAAFDRAGFEAWDVHMSDL-LAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAK 1124 (1310)
T ss_pred CceEEEEECCCCCCH---------HHHHHHHHHhCCCcEEEEEecc-ccCCcchhheeEEEEcCCCCCccchhHHHHHHH
Confidence 468999983322211 1135678888988777665421 11223578999999999953 221111 243
Q ss_pred -----HHHHHHHHHHH-hcCCcEEEEehHHHHHHHH---cCce-----EEecCC-CceeeEEEEEEecCCCCCCcccccC
Q 025645 82 -----LKLCFMLQTLD-AMQKKVLGICFGHQVLCRA---LGGK-----VGKAYT-GWDIGLRRVRIVNDLAPCSFLEDLG 146 (250)
Q Consensus 82 -----~~~~~~i~~~~-~~~~PilGIC~G~Qlla~a---~gg~-----v~~~~~-~~~~g~~~i~~~~~~~~~~l~~~~~ 146 (250)
..+++.++.+. +.+.++||||.|+|+|+.. ++|. ..++.. .++..|..+++.. ..+.+++++.
T Consensus 1125 ~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~~~~p~l~~N~s~~fe~r~~~~~v~~--s~s~~~~~~~ 1202 (1310)
T TIGR01735 1125 SILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGTENWPHFVRNNSERFEARVASVRVGE--SPSIMLRGMA 1202 (1310)
T ss_pred HHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCCCCCceeeecCCCCeEEeeeEEEECC--CCChhhhhcC
Confidence 34566666666 6789999999999999933 3332 444433 3566777887765 3677777631
Q ss_pred CCCCceEEEeeeccccc---------cc-CCccEEEEE-------------cCCC---ceEEEEEC-CcEEEEecCCCCC
Q 025645 147 EIPGSLSIMECHRDEVW---------KV-PIGAEVIGF-------------SDKT---GVEMFTIG-DHILGIQGHPEYT 199 (250)
Q Consensus 147 ~l~~~~~~~~~H~~~v~---------~l-p~~~~~la~-------------s~~~---~v~~~~~~-~~~~g~QfHPE~~ 199 (250)
...+.++..|++.=. ++ ..+...+-+ +.++ .++++... ++++|...|||..
T Consensus 1203 --g~~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGrvl~~MpHPEr~ 1280 (1310)
T TIGR01735 1203 --GSRLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLNPNGSPGGIAGITSCDGRVTIMMPHPERV 1280 (1310)
T ss_pred --CCEEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCCCCCCChhcceEeECCCCCEEEEcCCHHHh
Confidence 255778888866421 11 112222222 2222 26677764 4899999999954
No 102
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.94 E-value=6.6e-08 Score=88.07 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=100.9
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCC-ChhHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGN-DNWILKLC 85 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~-~~~~~~~~ 85 (250)
.||||.-+.-.+.+ |.+. ...|++.|+++..++... ++.+.++|+|+||||....+.. ......+.
T Consensus 245 ~~Iava~d~afnFy-------~~~~-~~~L~~~g~~~~~~~~~~-----d~~l~~~d~l~ipGG~~~~~~~~l~~~~~~~ 311 (449)
T TIGR00379 245 VRIAVAQDQAFNFY-------YQDN-LDALTHNAAELVPFSPLE-----DTELPDVDAVYIGGGFPELFAEELSQNQALR 311 (449)
T ss_pred cEEEEEechhhcee-------HHHH-HHHHHHCCCEEEEECCcc-----CCCCCCCCEEEeCCcHHHHHHHHHHhhhHHH
Confidence 58999876433332 2222 356778898887775321 2235579999999997433221 11123467
Q ss_pred HHHHHHHhcCCcEEEEehHHHHHHHHc---CceEEec-----------CCCceeeEEEEEEecCCCCCCcccccCCCCCc
Q 025645 86 FMLQTLDAMQKKVLGICFGHQVLCRAL---GGKVGKA-----------YTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGS 151 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Qlla~a~---gg~v~~~-----------~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~ 151 (250)
+.|+.+.+.+.||+|+|.|+|+|++.+ .|++ .. ++....|....+... ... +.. -...
T Consensus 312 ~~i~~~~~~G~pv~g~CgG~~~L~~~i~~~~g~~-~~~Gllp~~t~~~~~~~~~gy~~~~~~~---~~~-~~~---~g~~ 383 (449)
T TIGR00379 312 DSIKTFIHQGLPIYGECGGLMYLSQSLDNFEGQI-FMVGMLPTAATMTGRVQGLGYVQAEVVN---DCL-ILW---QGEK 383 (449)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHHhhhcCCCCce-eceeeeeeEEEEcCCcccccceEEEEec---Ccc-ccC---CCCE
Confidence 778888889999999999999999987 3321 11 000012222222221 111 111 1245
Q ss_pred eEEEeeecccccccCCccEEEEEcCC----CceEEEEECCcEEEEecCCCC--CHHHHHHHHHHH
Q 025645 152 LSIMECHRDEVWKVPIGAEVIGFSDK----TGVEMFTIGDHILGIQGHPEY--TKDILYNLIDRL 210 (250)
Q Consensus 152 ~~~~~~H~~~v~~lp~~~~~la~s~~----~~v~~~~~~~~~~g~QfHPE~--~~~~~~~~~~~~ 210 (250)
+.-+.+|.-.....+...-....... ....++..+ +++|.-.|=-+ .+.+.+.|++..
T Consensus 384 ~~GhEfH~~~~~~~~~~~~~~~~~~g~g~~~~~dG~~~~-nv~gsY~H~~~~~np~~~~~~l~~~ 447 (449)
T TIGR00379 384 FRGHEFHYSRMTKLPNAQFAYRVERGRGIIDQLDGICVG-SVLASYLHLHAGSVPKFAAAFVAFA 447 (449)
T ss_pred EEEEecCCccCcCCCCcceEEEeccCCCCCCceeEEEeC-CEEEEeeeeeCCcCHHHHHHHHHHh
Confidence 77888887553211211101111111 112566654 68998888543 567777787654
No 103
>PRK00784 cobyric acid synthase; Provisional
Probab=98.94 E-value=5.7e-08 Score=89.43 Aligned_cols=88 Identities=23% Similarity=0.281 Sum_probs=63.1
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhc-CCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHH--
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE-EGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILK-- 83 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~-- 83 (250)
.||||+..+.-.. | +.+ ..|++ .|+++.+++. ...+.++|+|+||||....+ ...|...
T Consensus 252 ~~i~v~~~~~a~~--------f-~nl-~~l~~~~g~~v~~~s~-------~~~l~~~d~lilpGg~~~~~-~~~~~~~~~ 313 (488)
T PRK00784 252 LRIAVIRLPRISN--------F-TDF-DPLRAEPGVDVRYVRP-------GEPLPDADLVILPGSKNTIA-DLAWLRESG 313 (488)
T ss_pred eEEEEEeCCCcCC--------c-cCh-HHHhhcCCCeEEEECC-------ccccccCCEEEECCccchHH-HHHHHHHcC
Confidence 5899997554432 1 112 45655 8998887752 22456799999999975443 2344444
Q ss_pred HHHHHHHHHhcCCcEEEEehHHHHHHHHc
Q 025645 84 LCFMLQTLDAMQKKVLGICFGHQVLCRAL 112 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G~Qlla~a~ 112 (250)
+.+.|+.+.+.++|++|||.|+|+|++.+
T Consensus 314 l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 314 WDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 67778888888999999999999999987
No 104
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=98.81 E-value=7.5e-08 Score=75.45 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=44.1
Q ss_pred CCCCCcCEEEEcCCCCCCCCCC-hhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcC
Q 025645 57 NDLHKYDGFVISGSPYDAYGND-NWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALG 113 (250)
Q Consensus 57 ~~l~~~dglIi~Gg~~~~~~~~-~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~g 113 (250)
+.+.++|+|+||||....++.. .....+.+-|+++.+.++||+|||-|+|+|++.+-
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 3567899999999975443221 11245678888999999999999999999999874
No 105
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=98.67 E-value=1.9e-07 Score=76.87 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=66.6
Q ss_pred ceEEEEecCCC----ChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-----------CC-----------------
Q 025645 7 KRYALFLAAKD----SDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-----------FP----------------- 54 (250)
Q Consensus 7 ~riail~~~~~----~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-----------~~----------------- 54 (250)
+||+|+..+.+ .+..+-. .-...|+++|++++++.+..+. .+
T Consensus 2 kkVlills~~~~~dG~e~~E~~------~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAV------LTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEI 75 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHH------HHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCC
Confidence 58999986322 2211111 1246889999998887643211 00
Q ss_pred ---CCCCCCCcCEEEEcCCCCCC---C------CCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHc
Q 025645 55 ---DFNDLHKYDGFVISGSPYDA---Y------GNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRAL 112 (250)
Q Consensus 55 ---~~~~l~~~dglIi~Gg~~~~---~------~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~ 112 (250)
+..+.++||+|+||||.... . +.......+.++++.+.+.++||.+||.|-++|+.++
T Consensus 76 ~~l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 76 KDLAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred CchhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 01124679999999996432 1 1122346789999999999999999999999999876
No 106
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.65 E-value=1.2e-06 Score=87.88 Aligned_cols=126 Identities=18% Similarity=0.199 Sum_probs=76.6
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCC----hhH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGND----NWI 81 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~----~~~ 81 (250)
+.||||+...-...+ .-...+|+.+|.++..+.+.+ ......+++++||+++||.+- .|.. .|.
T Consensus 929 ~p~VaIl~~pG~N~~---------~e~~~Af~~aGf~~~~v~~~d--l~~~~~l~~f~glv~~Ggfsy-~D~lgsg~~~a 996 (1202)
T TIGR01739 929 RHQVAVLLLPGQSVP---------HGLLAALTNAGFDPRIVSITE--LKKTDFLDTFSGLIIGGASGT-LDSEVGARALA 996 (1202)
T ss_pred CCeEEEEeCCCCCCH---------HHHHHHHHHcCCceEEEEecc--CCCCCchhheEEEEEcCcCCC-CccchHHHHHH
Confidence 457999873322211 123568888998877766443 222224778999999887532 1221 344
Q ss_pred ------HHHHHHHHHHH-hcCCcEEEEeh-HHHHHHHH--cCc-----------------eEEecCC-CceeeEEEEEEe
Q 025645 82 ------LKLCFMLQTLD-AMQKKVLGICF-GHQVLCRA--LGG-----------------KVGKAYT-GWDIGLRRVRIV 133 (250)
Q Consensus 82 ------~~~~~~i~~~~-~~~~PilGIC~-G~Qlla~a--~gg-----------------~v~~~~~-~~~~g~~~i~~~ 133 (250)
..+++.++++. +.+.++||||- |+|+|+.. ++. ...++.. .++..|..+++.
T Consensus 997 ~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~~~~~~~~~~~~~~~~~~~l~~N~s~~fesr~~~v~i~ 1076 (1202)
T TIGR01739 997 AALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGYTQSSPFITVPTEVQEPPRLEKNASGLYESRWLNFYIP 1076 (1202)
T ss_pred HHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcCCcccccccccccccCCceeeecCCCCeEEeeeEEEeC
Confidence 45666677766 45999999997 99999874 210 1222222 245667777776
Q ss_pred cCCCCCCcccc
Q 025645 134 NDLAPCSFLED 144 (250)
Q Consensus 134 ~~~~~~~l~~~ 144 (250)
.+ ..+.+|++
T Consensus 1077 ~~-s~si~~~~ 1086 (1202)
T TIGR01739 1077 ET-TKSVFLRP 1086 (1202)
T ss_pred CC-CCChhhhh
Confidence 42 24566665
No 107
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.63 E-value=3.5e-08 Score=81.10 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=68.3
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcC-CCceEEEEeecCCCCC-CCCCCCcCEEEEcCCCCCCCCCChhHH-
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEE-GERWDLFRVVEGDFPD-FNDLHKYDGFVISGSPYDAYGNDNWIL- 82 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~-~~~l~~~dglIi~Gg~~~~~~~~~~~~- 82 (250)
..||+++-+..... .+|..++.+++++. |.++..+.... .++ .+.+.++|+|+++||... ....++.
T Consensus 31 ~~~i~~IptAs~~~------~~~~~~~~~a~~~l~G~~~~~~~~~~--~~~~~~~l~~ad~I~l~GG~~~--~~~~~l~~ 100 (212)
T cd03146 31 RPKVLFVPTASGDR------DEYTARFYAAFESLRGVEVSHLHLFD--TEDPLDALLEADVIYVGGGNTF--NLLAQWRE 100 (212)
T ss_pred CCeEEEECCCCCCH------HHHHHHHHHHHhhccCcEEEEEeccC--cccHHHHHhcCCEEEECCchHH--HHHHHHHH
Confidence 46899998766532 23567788899999 99888776543 122 346789999999998432 2222222
Q ss_pred -HHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 83 -KLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 83 -~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
.+.+.++.+.+.++|++|+|.|+|+++..
T Consensus 101 ~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 101 HGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred cCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 35667777778899999999999999874
No 108
>PHA03366 FGAM-synthase; Provisional
Probab=98.60 E-value=1.9e-06 Score=86.93 Aligned_cols=127 Identities=20% Similarity=0.163 Sum_probs=77.9
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCC--CCCC-ChhH-
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYD--AYGN-DNWI- 81 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~--~~~~-~~~~- 81 (250)
+.|+||+...-...+ .-..++|..+|.++..+.+.+ ......|++++||+++||..- ..+. ..|.
T Consensus 1028 ~prVaIl~~pG~N~~---------~e~~~Af~~aGf~~~~v~~~d--L~~~~~l~~f~glv~~GGFS~gD~l~~~~~~a~ 1096 (1304)
T PHA03366 1028 RHRVAVLLLPGCPGP---------HALLAAFTNAGFDPYPVSIEE--LKDGTFLDEFSGLVIGGSSGAEDSYTGARAAVA 1096 (1304)
T ss_pred CCeEEEEECCCCCCH---------HHHHHHHHHcCCceEEEEeec--CCCCCccccceEEEEcCCCCCcccccHHHHHHH
Confidence 568999973322211 123567888999877766532 222223889999999998642 2111 1342
Q ss_pred -----HHHHHHHHHHH-hcCCcEEEEeh-HHHHHHHH--cC-----------------ceEEecCC-CceeeEEEEEEec
Q 025645 82 -----LKLCFMLQTLD-AMQKKVLGICF-GHQVLCRA--LG-----------------GKVGKAYT-GWDIGLRRVRIVN 134 (250)
Q Consensus 82 -----~~~~~~i~~~~-~~~~PilGIC~-G~Qlla~a--~g-----------------g~v~~~~~-~~~~g~~~i~~~~ 134 (250)
..+.+.++.+. +.+.++||||- |+|+|+.. +| ....++.. .++..|..+++..
T Consensus 1097 ~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~~~~~~~~p~g~i~~~~~~~l~~N~s~rfesr~~~v~i~~ 1176 (1304)
T PHA03366 1097 ALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVGSTAPSPVPGTETEEQWPITLEPNASGLYESRWLNFYIPE 1176 (1304)
T ss_pred HhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCccCCccccccccccccCCCCeEeeeCCCCeEeeceEEEeCC
Confidence 34556666666 45899999998 99999874 31 23333332 2556677777764
Q ss_pred CCCCCCcccc
Q 025645 135 DLAPCSFLED 144 (250)
Q Consensus 135 ~~~~~~l~~~ 144 (250)
. ..+.+|++
T Consensus 1177 ~-s~Si~l~~ 1185 (1304)
T PHA03366 1177 T-TKSVALRP 1185 (1304)
T ss_pred C-CCCccccc
Confidence 2 24556655
No 109
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.59 E-value=3.7e-07 Score=65.33 Aligned_cols=76 Identities=30% Similarity=0.432 Sum_probs=56.0
Q ss_pred HHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHH
Q 025645 32 FVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVL 108 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qll 108 (250)
+.+.++..+.++.++.......+......++|++|++||........ +.....+.+++..+.++|++|+|.|+|++
T Consensus 17 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~-~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 17 PLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA-RDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhc-cCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 45778888888887765443322223467899999999876543221 34567778888888899999999999999
No 110
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.48 E-value=3e-07 Score=84.29 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=41.3
Q ss_pred CCCCcCEEEEcCCCCCCCCCChhHHH--HHHHHHHHHhcCCcEEEEehHHHHHHHHc
Q 025645 58 DLHKYDGFVISGSPYDAYGNDNWILK--LCFMLQTLDAMQKKVLGICFGHQVLCRAL 112 (250)
Q Consensus 58 ~l~~~dglIi~Gg~~~~~~~~~~~~~--~~~~i~~~~~~~~PilGIC~G~Qlla~a~ 112 (250)
.+.++|+|+||||..... +..|... +.+.|+.+.+.+.||+|||.|+|+|++.+
T Consensus 281 ~l~~~d~lilpGg~~~~~-~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 281 SLTGCDAVIIPGSKSTIA-DLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred ccccCCEEEECCcchHHH-HHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhhh
Confidence 466799999999974332 2333332 56778888888999999999999999975
No 111
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.42 E-value=1.7e-06 Score=69.08 Aligned_cols=49 Identities=31% Similarity=0.477 Sum_probs=39.3
Q ss_pred CcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 61 KYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
++|+|+|+||+.... ......+.++++++.++++||.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~--~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEY--LRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhh--hccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 689999999974221 1112567889999999999999999999999986
No 112
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=98.42 E-value=2.1e-06 Score=69.00 Aligned_cols=171 Identities=18% Similarity=0.125 Sum_probs=97.9
Q ss_pred ceEEEEecCCCChhHHHhhCCHHH--HHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCCh--hHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFN--VFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDN--WIL 82 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~--~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~--~~~ 82 (250)
++|+-| .+.+...|++-.+ ++.+..+..|+.+++..+...+..+ .+.+|.+++.||..-. .... -..
T Consensus 4 L~I~~l-----ypdlmntYGD~GNil~Lr~ra~~rgi~v~i~~vsl~d~~~---~~~~Dl~~~GGgqD~e-Q~i~t~d~~ 74 (250)
T COG3442 4 LTIGHL-----YPDLMNTYGDNGNILVLRQRAEKRGIKVEIVEVSLTDTFP---DDSYDLYFLGGGQDYE-QEIATRDLL 74 (250)
T ss_pred EEeeee-----chhhhhccCCCCceeeehHHHHhcCCceEEEEeecCCCCC---cccccEEEecCchHHH-HHHHhhhhc
Confidence 456655 3456677777766 4457888899999988876544222 2578988888875311 1110 012
Q ss_pred HHHHHHHHHHhcCCcEEEEehHHHHHHHHc----CceEEec---------C-CCceeeEEEEEEecCCCCCCcccccCCC
Q 025645 83 KLCFMLQTLDAMQKKVLGICFGHQVLCRAL----GGKVGKA---------Y-TGWDIGLRRVRIVNDLAPCSFLEDLGEI 148 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGIC~G~Qlla~a~----gg~v~~~---------~-~~~~~g~~~i~~~~~~~~~~l~~~~~~l 148 (250)
...+-++.+.+.++|+|.||.|.|+|.+.+ |-++... + ...-+|.-.++.+-. ... +
T Consensus 75 ~k~~~l~~~i~~g~p~laiCgg~QlLG~yY~~a~G~ri~GlGiLd~~T~~~~~~R~IGdiv~~~~~~---~e~------~ 145 (250)
T COG3442 75 TKKEGLKDAIENGKPVLAICGGYQLLGQYYETASGTRIDGLGILDHYTENPQTKRFIGDIVIENTLA---GEE------F 145 (250)
T ss_pred cccHHHHHHHhcCCcEEEEccchhhccceeecCCCcEeecccceeeeeccccccceeeeEEeecccc---hHH------h
Confidence 335567888899999999999999999864 3232211 1 111233322222211 111 3
Q ss_pred CCceEEEeeecccccccCCccEEE-----EEcCC--CceEEEEECCcEEEEecCCC
Q 025645 149 PGSLSIMECHRDEVWKVPIGAEVI-----GFSDK--TGVEMFTIGDHILGIQGHPE 197 (250)
Q Consensus 149 ~~~~~~~~~H~~~v~~lp~~~~~l-----a~s~~--~~v~~~~~~~~~~g~QfHPE 197 (250)
.+.+.-+..|+-. +-+.++++.| +..+. ...++..++ +++|+=||==
T Consensus 146 ~et~~GFENH~Gr-T~L~~d~~pLG~Vv~G~GNn~eD~~eG~~yk-n~~aTY~HGP 199 (250)
T COG3442 146 GETLVGFENHGGR-TYLGPDVKPLGKVVYGYGNNGEDGTEGAHYK-NVIATYFHGP 199 (250)
T ss_pred CCeeeeeecCCCc-eecCCCCccceeEEEccCCCccccccceeee-eeEEEeecCc
Confidence 3456667777654 3344444333 33222 225565555 5889989843
No 113
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.38 E-value=1.4e-06 Score=59.43 Aligned_cols=76 Identities=33% Similarity=0.503 Sum_probs=53.5
Q ss_pred HHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHH
Q 025645 32 FVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVL 108 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qll 108 (250)
+.+.+++.+..+.++..............++|++|++||+....... +.....+.+.+....++|++|+|.|+|++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 17 PLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA-WDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred HHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhc-cCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 45677778888777765443322123467899999999987653322 34566777777777899999999999864
No 114
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=98.36 E-value=2.2e-06 Score=67.44 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=61.1
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCC---------C--CCCC--CCCcCEEEEcCCCCCC
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDF---------P--DFND--LHKYDGFVISGSPYDA 74 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~---------~--~~~~--l~~~dglIi~Gg~~~~ 74 (250)
||+||..+...+. . + ......|.++|.++.++....+.. + ..++ ..++|+|+++||+..
T Consensus 1 ~v~il~~~g~~~~-e-----~-~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~- 72 (166)
T TIGR01382 1 KLLVLTTDEFEDS-E-----L-LYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAP- 72 (166)
T ss_pred CEEEEecCCchHH-H-----H-HHHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCH-
Confidence 5788875544331 1 1 123467778888887765332211 0 0111 236899999999652
Q ss_pred CCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 75 YGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 75 ~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
........+.++++++.++++|+.|||.|.++|+.+
T Consensus 73 -~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 73 -EYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred -HHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 111112567889999999999999999999999975
No 115
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=98.33 E-value=4.5e-06 Score=65.58 Aligned_cols=95 Identities=22% Similarity=0.275 Sum_probs=61.8
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEee-cCC------C---C-C--CCC--CCCcCEEEEcCCCC
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVV-EGD------F---P-D--FND--LHKYDGFVISGSPY 72 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~------~---~-~--~~~--l~~~dglIi~Gg~~ 72 (250)
||+|+..+..... ++ ..+...|+..|.++.++... ... . . + .++ ..++|+|++|||+.
T Consensus 1 ~v~il~~~gf~~~------e~-~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~ 73 (165)
T cd03134 1 KVAILAADGFEDV------EL-TYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTN 73 (165)
T ss_pred CEEEEcCCCchHH------HH-HHHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCC
Confidence 5788875544322 11 12345678888888877654 211 1 0 0 111 23689999999973
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 73 DAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 73 ~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
. ........+.++++++.+++++|.|||-|.++|+.+
T Consensus 74 ~--~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 74 P--DKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred h--hhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence 2 111112567889999999999999999999999885
No 116
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=98.33 E-value=1.8e-06 Score=71.76 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=42.2
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
.++||+|+||||....+ +..-...+.++++.+.+.++||.+||.|-++|+.+
T Consensus 92 ~~dYDav~iPGG~g~~~-dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLF-DFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhh-hcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 46899999999965432 22224678899999999999999999999999886
No 117
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=98.27 E-value=5.7e-06 Score=67.78 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=57.1
Q ss_pred HHHHHhcCCCceEEEEeecCC-----------C------------------CC--CCCCCCcCEEEEcCCCCCC---CC-
Q 025645 32 FVAAFGEEGERWDLFRVVEGD-----------F------------------PD--FNDLHKYDGFVISGSPYDA---YG- 76 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~-----------~------------------~~--~~~l~~~dglIi~Gg~~~~---~~- 76 (250)
....|+++|++++++.+..+. . .. ...+++||+|+||||.... .+
T Consensus 22 p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~ 101 (213)
T cd03133 22 TLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDF 101 (213)
T ss_pred HHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhh
Confidence 357899999999887652210 0 00 1124579999999995421 11
Q ss_pred ----C-ChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcC
Q 025645 77 ----N-DNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALG 113 (250)
Q Consensus 77 ----~-~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~g 113 (250)
+ ......+.++++.+.+.++||.+||.|-++|+.+.+
T Consensus 102 ~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 102 AVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred cccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 0 011256889999999999999999999999998764
No 118
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=98.27 E-value=7e-06 Score=62.94 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=64.5
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCC---------CC--CCC--CCCcCEEEEcCCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDF---------PD--FND--LHKYDGFVISGSPYD 73 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~---------~~--~~~--l~~~dglIi~Gg~~~ 73 (250)
+||+||..+..... ++ ....+.|+.+|.++.++....+.. ++ .++ ..++|+||||||...
T Consensus 2 ~~v~ill~~g~~~~------e~-~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~ 74 (142)
T cd03132 2 RKVGILVADGVDAA------EL-SALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEA 74 (142)
T ss_pred CEEEEEEcCCcCHH------HH-HHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccC
Confidence 68999986654322 11 224567888888888776433211 11 111 235899999998653
Q ss_pred CCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 74 AYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 74 ~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
... ......+.+++++..++++||.+||-|..+|+.+
T Consensus 75 ~~~-~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 75 AFA-LAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred HHH-HccChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 211 0112567888999999999999999999999985
No 119
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=98.26 E-value=3e-06 Score=76.27 Aligned_cols=89 Identities=21% Similarity=0.275 Sum_probs=55.9
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhc-CCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHH-
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE-EGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILK- 83 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~- 83 (250)
..+|+|+.....+. |++ | ..|+. .+.++.++. ...++.++|.+||||+.... .+..|...
T Consensus 251 ~i~Iav~~lp~isN--------FtD-~-dpL~~~~~v~v~~v~-------~~~~l~~~dlvIlPGsk~t~-~DL~~lr~~ 312 (486)
T COG1492 251 AIRIAVIRLPRISN--------FTD-F-DPLRAEPDVRVRFVK-------PGSDLRDADLVILPGSKNTI-ADLKILREG 312 (486)
T ss_pred ceEEEEecCCCccc--------ccc-c-hhhhcCCCeEEEEec-------cCCCCCCCCEEEeCCCcccH-HHHHHHHHc
Confidence 34788887666553 333 1 23333 466666664 33457779999999986543 44444322
Q ss_pred -HHHHHHHHHhcCCcEEEEehHHHHHHHHc
Q 025645 84 -LCFMLQTLDAMQKKVLGICFGHQVLCRAL 112 (250)
Q Consensus 84 -~~~~i~~~~~~~~PilGIC~G~Qlla~a~ 112 (250)
+.+-+.+....+.||+|||.|+|+|...+
T Consensus 313 g~d~~i~~~~~~~~~viGICGG~QmLG~~i 342 (486)
T COG1492 313 GMDEKILEYARKGGDVIGICGGYQMLGRRL 342 (486)
T ss_pred CHHHHHHHHHhCCCCEEEEcchHHhhhhhh
Confidence 22233444455899999999999998754
No 120
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=98.25 E-value=8.8e-05 Score=65.40 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=43.9
Q ss_pred ceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHH
Q 025645 42 RWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCR 110 (250)
Q Consensus 42 ~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~ 110 (250)
.+.+..+....+....-..+++.+|+|||....|... ....-.+.||++.+.|.-.||||.|.-.-+.
T Consensus 30 ~y~V~~v~~~~l~~~pw~~~~~LlV~PGG~d~~y~~~-l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 30 HYAVIPVTADELLNEPWQSKCALLVMPGGADLPYCRS-LNGEGNRRIRQFVENGGGYLGICAGAYYASS 97 (367)
T ss_pred CeEEEEeCHHHhhcCccccCCcEEEECCCcchHHHHh-hChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence 3444444433332222235789999999986655321 1122366788888899999999999876654
No 121
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=98.20 E-value=1.1e-05 Score=64.89 Aligned_cols=98 Identities=26% Similarity=0.249 Sum_probs=64.6
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC--CC----------C--CCCC--CCCcCEEEEcCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG--DF----------P--DFND--LHKYDGFVISGS 70 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~----------~--~~~~--l~~~dglIi~Gg 70 (250)
+||+|+...-... .. +. .-...|+++|..+.+...... .. + ...+ .++||+|++|||
T Consensus 3 ~~i~i~~~~g~e~-~E-----~~-~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG 75 (188)
T COG0693 3 KKIAILLADGFED-LE-----LI-VPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGG 75 (188)
T ss_pred ceeEEEecCccee-hh-----Hh-HHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCC
Confidence 6788876432221 11 11 124688889988776654432 10 0 0112 348999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHc
Q 025645 71 PYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRAL 112 (250)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~ 112 (250)
...+....++ ..+.++++++.+.++||.+||.|-++|+.+-
T Consensus 76 ~~~~~~~~~~-~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag 116 (188)
T COG0693 76 DHGPEYLRPD-PDLLAFVRDFYANGKPVAAICHGPAVLAAAG 116 (188)
T ss_pred ccchhhccCc-HHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence 4443333232 7889999999999999999999999998763
No 122
>PRK04155 chaperone protein HchA; Provisional
Probab=98.19 E-value=1.4e-05 Score=68.36 Aligned_cols=52 Identities=17% Similarity=0.103 Sum_probs=41.9
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
.++||+|+||||.... .+.+-...+.++++++.+.++||.+||.|-++|..+
T Consensus 145 ~~dYDaV~iPGG~g~~-~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 145 DSDYAAVFIPGGHGAL-IGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred cccccEEEECCCCchH-HHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 4689999999996543 233334678899999999999999999999977764
No 123
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=98.18 E-value=1.9e-06 Score=63.28 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=33.1
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHH
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVL 108 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qll 108 (250)
.++|.||+|||........--... .+.|++..+.++|+||||+|.=+.
T Consensus 43 ~~ad~lVlPGGa~~~~~~~L~~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPGGADLPYCRALNGKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECCCChHHHHHHHHhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 479999999976543211100112 567777778899999999997655
No 124
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.13 E-value=6.2e-05 Score=66.92 Aligned_cols=181 Identities=17% Similarity=0.175 Sum_probs=112.1
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-CCCCCCCCCcCEEEEcCCCCCCCC-CChhHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-FPDFNDLHKYDGFVISGSPYDAYG-NDNWILKL 84 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~l~~~dglIi~Gg~~~~~~-~~~~~~~~ 84 (250)
.||||-.+.-...+ |.++ .+.|++.|+++..+.+-.++ .| .++|+|.|+||--..+. ...-...+
T Consensus 246 ~rIAVA~D~AF~Fy-------Y~~n-l~~Lr~~GAelv~FSPL~D~~lP-----~~~D~vYlgGGYPElfA~~L~~n~~~ 312 (451)
T COG1797 246 VRIAVARDAAFNFY-------YPEN-LELLREAGAELVFFSPLADEELP-----PDVDAVYLGGGYPELFAEELSANESM 312 (451)
T ss_pred ceEEEEecchhccc-------cHHH-HHHHHHCCCEEEEeCCcCCCCCC-----CCCCEEEeCCCChHHHHHHHhhCHHH
Confidence 58999987766654 3333 45899999999998765432 22 25999999999643321 22223557
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHc---CceEEec----------CCC-ceeeEEEEEEecCCCCCCcccccCCCCC
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRAL---GGKVGKA----------YTG-WDIGLRRVRIVNDLAPCSFLEDLGEIPG 150 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~---gg~v~~~----------~~~-~~~g~~~i~~~~~~~~~~l~~~~~~l~~ 150 (250)
++-|+.+.+.|+||+|-|.|+..|+..+ .|....+ .+. ...|...++... +.++.. -..
T Consensus 313 ~~~i~~~~~~G~piyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m~~Rl~~lGY~~~~~~~----d~~~~~---~G~ 385 (451)
T COG1797 313 RRAIKAFAAAGKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRMTKRLQALGYREAEAVD----DTLLLR---AGE 385 (451)
T ss_pred HHHHHHHHHcCCceEEecccceeehhheeccCCceeeeeeeeccchhhhhhhhccceeEEEecC----Cccccc---CCc
Confidence 7888999999999999999999999876 2222211 111 236666766653 233333 246
Q ss_pred ceEEEeeecccccccCCccEEEE---EcCCC--ceEEEEECCcEEEE--ecCCCCCHHHHHHHHHH
Q 025645 151 SLSIMECHRDEVWKVPIGAEVIG---FSDKT--GVEMFTIGDHILGI--QGHPEYTKDILYNLIDR 209 (250)
Q Consensus 151 ~~~~~~~H~~~v~~lp~~~~~la---~s~~~--~v~~~~~~~~~~g~--QfHPE~~~~~~~~~~~~ 209 (250)
.++-..+|.-.+...++ .+... ....- .-.++..+ ++++. -.|+--++.+..+|+..
T Consensus 386 ~irGHEFHyS~~~~~~~-~~~a~~~~~g~g~~~~~~G~~~g-nv~asY~H~H~~s~~~~~~~~v~~ 449 (451)
T COG1797 386 KIRGHEFHYSRLITEED-AEPAFRVRRGDGIDNGRDGYRSG-NVLASYLHLHFASNPAFAARFVAA 449 (451)
T ss_pred eeeeeeeeeeecccCCc-CceeeeeecccCccccccceeeC-CeEEEEEeeecccCHHHHHHHHHh
Confidence 68888888777643332 22222 11111 12355555 45543 45666677888888764
No 125
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=98.07 E-value=4.2e-06 Score=69.48 Aligned_cols=101 Identities=10% Similarity=0.061 Sum_probs=68.5
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
.+||+++-+-...+. +..|.+.+.+.+++.|.++..+....+ ..+.+.++|+|+++||.....-..-....+.
T Consensus 31 ~~~v~fIPtAs~~~~----~~~y~~~~~~af~~lG~~v~~l~~~~d---~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~ 103 (233)
T PRK05282 31 RRKAVFIPYAGVTQS----WDDYTAKVAEALAPLGIEVTGIHRVAD---PVAAIENAEAIFVGGGNTFQLLKQLYERGLL 103 (233)
T ss_pred CCeEEEECCCCCCCC----HHHHHHHHHHHHHHCCCEEEEeccchh---hHHHHhcCCEEEECCccHHHHHHHHHHCCcH
Confidence 568999886654321 224566778899999998777654321 1134788999999999653221110112456
Q ss_pred HHHHHHHhcCCcEEEEehHHHHHHHHcC
Q 025645 86 FMLQTLDAMQKKVLGICFGHQVLCRALG 113 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Qlla~a~g 113 (250)
+.|+++.+.++|++|+|.|+-+++....
T Consensus 104 ~~l~~~~~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 104 APIREAVKNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred HHHHHHHHCCCEEEEECHHHHhhhccce
Confidence 7788888899999999999988776543
No 126
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=98.04 E-value=5.9e-05 Score=61.01 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=60.3
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC-C----------C-CC--CCC--CCCcCEEEEcC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG-D----------F-PD--FND--LHKYDGFVISG 69 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~----------~-~~--~~~--l~~~dglIi~G 69 (250)
.+||+|+..+...+. . +.. ....|+++|.++....+... . + ++ .++ .+++|.|+|||
T Consensus 2 ~~~~~il~~~g~~~~-e-----~~~-p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipG 74 (196)
T PRK11574 2 SASALVCLAPGSEET-E-----AVT-TIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPG 74 (196)
T ss_pred CceEEEEeCCCcchh-h-----HhH-HHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECC
Confidence 378999985543321 1 111 34677777887776554221 0 0 11 111 24799999999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHH
Q 025645 70 SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCR 110 (250)
Q Consensus 70 g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~ 110 (250)
|...... ..-.+.+.++++++.+.+++|.+||-|..+|..
T Consensus 75 G~~~~~~-~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 75 GIKGAEC-FRDSPLLVETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred CCchhhh-hhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 8643211 111245788999999999999999999997654
No 127
>PRK11249 katE hydroperoxidase II; Provisional
Probab=97.87 E-value=7.6e-05 Score=71.22 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=66.9
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCC--------CCCCC-----CCCcCEEEEcCC
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDF--------PDFND-----LHKYDGFVISGS 70 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--------~~~~~-----l~~~dglIi~Gg 70 (250)
..++||+||+.+.....- + ..+.+.|+++|+.+.++....+.+ +.+.. ...||+|+|+||
T Consensus 595 ~~gRKIaILVaDG~d~~e------v-~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG 667 (752)
T PRK11249 595 IKGRKVAILLNDGVDAAD------L-LAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGG 667 (752)
T ss_pred ccccEEEEEecCCCCHHH------H-HHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCC
Confidence 457899999866443321 1 235678888999888775432211 11111 125899999998
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 71 PYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
...+ ....-...+..+|+++.+++++|.+||-|.++|+.+
T Consensus 668 ~~~~-~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 668 KANI-ADLADNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred chhH-HHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 6532 111112468889999999999999999999999974
No 128
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.86 E-value=8.1e-05 Score=58.85 Aligned_cols=49 Identities=22% Similarity=0.241 Sum_probs=39.9
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
.++|+|+|+||+...... .+.+.++++++.+.+++|.+||-|.++|+.+
T Consensus 59 ~~~D~l~I~Gg~~~~~~~---~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDSWDNPE---APDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcccccCC---cHHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 579999999996422211 2567889999999999999999999999986
No 129
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=97.81 E-value=0.00012 Score=57.21 Aligned_cols=79 Identities=28% Similarity=0.284 Sum_probs=54.0
Q ss_pred HHHHHhcCCCceEEEEeecCCC----------CC--CCC--CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCc
Q 025645 32 FVAAFGEEGERWDLFRVVEGDF----------PD--FND--LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKK 97 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~----------~~--~~~--l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~P 97 (250)
....|+.+|.++.++....+.. ++ .++ ..++|.|+||||+.... .....+.+.++++++.+++++
T Consensus 17 ~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~-~~~~~~~l~~~l~~~~~~~~~ 95 (163)
T cd03135 17 PVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQ-NLADNEKLIKLLKEFNAKGKL 95 (163)
T ss_pred HHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHH-HHHhCHHHHHHHHHHHHcCCE
Confidence 4567777888877665332210 11 112 25799999999973221 111135688899999999999
Q ss_pred EEEEehHHHHHHHH
Q 025645 98 VLGICFGHQVLCRA 111 (250)
Q Consensus 98 ilGIC~G~Qlla~a 111 (250)
|.+||-|..+|+.+
T Consensus 96 i~~ic~g~~~La~a 109 (163)
T cd03135 96 IAAICAAPAVLAKA 109 (163)
T ss_pred EEEEchhHHHHHHc
Confidence 99999999999987
No 130
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=97.80 E-value=0.00021 Score=62.36 Aligned_cols=51 Identities=27% Similarity=0.193 Sum_probs=40.9
Q ss_pred CCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 58 DLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 58 ~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
+..++|.||||||..... .....+.++|+...+.+++|.|||-|.-+|+.+
T Consensus 72 ~~~~~D~livpGg~~~~~---~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 72 LLDRADTIVIPGWRGPDA---PVPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred ccCCCCEEEECCCCcccc---cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 456899999999854321 124578889999988999999999999999886
No 131
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.80 E-value=0.00022 Score=57.06 Aligned_cols=52 Identities=25% Similarity=0.245 Sum_probs=41.5
Q ss_pred CCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 58 DLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 58 ~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
+..++|.|+||||..... ......+.+++++....+++|.+||-|-++|+.+
T Consensus 61 ~~~~~D~liipGg~~~~~--~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 61 ALAAADTVIVPGGPDVDG--RPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred ccCCCCEEEECCCccccc--ccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 456899999999865421 1123678889999989999999999999999986
No 132
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.74 E-value=0.00027 Score=56.97 Aligned_cols=54 Identities=22% Similarity=0.102 Sum_probs=41.7
Q ss_pred CCCCcCEEEEcCCCCCCCC-CChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 58 DLHKYDGFVISGSPYDAYG-NDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 58 ~l~~~dglIi~Gg~~~~~~-~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
+..++|.|+||||...... .......+.+++++..+.+++|.+||-|..+|+.+
T Consensus 66 ~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 66 DVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred ccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 4568999999998643211 12223568889999999999999999999999985
No 133
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=97.72 E-value=0.00018 Score=57.16 Aligned_cols=52 Identities=29% Similarity=0.300 Sum_probs=40.0
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
..++|.|+|+||..... ...-.+.+.++++++.+.+++|.+||-|..+|+.+
T Consensus 61 ~~~~D~l~v~Gg~~~~~-~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAE-NLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred cccCCEEEECCCchHHH-HHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 45799999999853211 00112567889999999999999999999999986
No 134
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=97.69 E-value=1.3e-05 Score=61.94 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=39.4
Q ss_pred CCCcCEEEEcCCCCCCCCCCh-hHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 59 LHKYDGFVISGSPYDAYGNDN-WILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~-~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
..+||+||||||.... .... ....+.++++++.+.++||.+||.|-.+|+.+
T Consensus 35 ~~~yDalilpGG~~~~-~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 35 PSDYDALILPGGHGGA-DDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp GGGESEEEEE-BTHHH-HHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred hhhCCEEEECCCCchh-hhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 4569999999997632 1111 13678899999999999999999999999886
No 135
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=97.61 E-value=9.9e-05 Score=61.45 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=41.4
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
++||+|++|||.... .+.+-...+.++++.+.+.++||-.||.|-++|..+
T Consensus 95 ~dYDav~iPGG~g~~-~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGAL-IGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCCh-hhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 589999999996543 233334678889999999999999999999987764
No 136
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=97.48 E-value=0.00017 Score=59.58 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=41.3
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
+++||+|+||||+..... ..-.+.+.++++++.+.+++|.+||.|-.+|+.+
T Consensus 88 ~~~~dal~ipGG~~~~~~-l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFD-LPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred HhHceEEEECCCcccccc-cccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 357999999999753321 1123568899999999999999999999999986
No 137
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.43 E-value=0.00055 Score=54.52 Aligned_cols=51 Identities=20% Similarity=0.137 Sum_probs=39.9
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
...+|+||||||.... .......+.++++++.+++++|.++|-|..+|+.+
T Consensus 60 ~~~~D~lvipgg~~~~--~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 60 PPDLDVLLVPGGGGTR--ALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCCCEEEECCCcchh--hhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 3479999999996432 11123567888999999999999999999999875
No 138
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.0054 Score=58.91 Aligned_cols=178 Identities=20% Similarity=0.287 Sum_probs=98.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCC-CCCCCCCCcCEEEEcCCCC--CCCC-CChhH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDF-PDFNDLHKYDGFVISGSPY--DAYG-NDNWI 81 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~l~~~dglIi~Gg~~--~~~~-~~~~~ 81 (250)
..|+|||--.-...+ .. ....+..+|.+..-+.. +++ .....|++|-||+.+||.. ++.+ ...|.
T Consensus 1058 ~PkVAilREeGvNg~--------rE-Ma~af~~AgF~~~DVtm--tDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWA 1126 (1320)
T KOG1907|consen 1058 APKVAILREEGVNGD--------RE-MAAAFYAAGFETVDVTM--TDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWA 1126 (1320)
T ss_pred CCceEEeeccccccH--------HH-HHHHHHHcCCceeeeee--ehhhcCceeHhHhcceeeecCcchHhhhccccchh
Confidence 459999974433321 12 34566677765433322 221 1223478899999999963 2222 22453
Q ss_pred H------HHHHHHHHHH-hcCCcEEEEehHHHHHHHH--cCceEEe--------cC-CCceeeEEEEEEecCCCCCCccc
Q 025645 82 L------KLCFMLQTLD-AMQKKVLGICFGHQVLCRA--LGGKVGK--------AY-TGWDIGLRRVRIVNDLAPCSFLE 143 (250)
Q Consensus 82 ~------~~~~~i~~~~-~~~~PilGIC~G~Qlla~a--~gg~v~~--------~~-~~~~~g~~~i~~~~~~~~~~l~~ 143 (250)
. .++.-..++. ..+.--||||-|.|++++. .|-.+.. +. ..++.-+..+++.. ..+-+++
T Consensus 1127 asil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~p~~~~~p~~~l~~Nes~rfE~r~~~vkI~~--~~SIml~ 1204 (1320)
T KOG1907|consen 1127 ASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIGPEVGKWPDVFLDHNESGRFECRFGMVKIES--NVSIMLS 1204 (1320)
T ss_pred hheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHhcccCccccCCCceeeecccccceeeeEEEEEeCC--Cchhhhc
Confidence 2 2222222222 3456789999999999985 2222222 21 12445566677763 2556667
Q ss_pred ccCCCCCceEEEeeecccccc----------cCCccEEEEEcCC-------------C---ceEEEEEC-CcEEEEecCC
Q 025645 144 DLGEIPGSLSIMECHRDEVWK----------VPIGAEVIGFSDK-------------T---GVEMFTIG-DHILGIQGHP 196 (250)
Q Consensus 144 ~~~~l~~~~~~~~~H~~~v~~----------lp~~~~~la~s~~-------------~---~v~~~~~~-~~~~g~QfHP 196 (250)
++ -...+.++..|+..=.. ..+++..+-+-++ + .+.+++.. ++.+++..||
T Consensus 1205 gM--~gs~LgvwvAHGEGRa~f~~e~~~e~~~~~gl~~iryvdd~g~~te~yPfNpNGS~~gIAgicSpdGRhLAMMPHp 1282 (1320)
T KOG1907|consen 1205 GM--AGSVLGVWVAHGEGRATFRSEQNLEHLKKEGLVCIRYVDDYGNVTELYPFNPNGSPDGIAGICSPDGRHLAMMPHP 1282 (1320)
T ss_pred cc--cCCceeeEEEecccceecCcHHHHHHHhhcCeeEEEEecCCCCEeeecccCCCCCcccceeeeCCCCCeeeccCCc
Confidence 63 23567788888776321 1234444433221 1 25666664 4899999999
Q ss_pred CC
Q 025645 197 EY 198 (250)
Q Consensus 197 E~ 198 (250)
|.
T Consensus 1283 ER 1284 (1320)
T KOG1907|consen 1283 ER 1284 (1320)
T ss_pred hh
Confidence 93
No 139
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=97.40 E-value=0.00018 Score=58.93 Aligned_cols=99 Identities=17% Similarity=0.097 Sum_probs=64.9
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC--CCCCCCCCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG--DFPDFNDLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
..||+++.+..... ..+...+.+.+++.|.+...+..... +....+.+.++|+|+++||....+ -..|...
T Consensus 29 ~~~i~~iptA~~~~------~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~-~~~l~~t 101 (210)
T cd03129 29 GARVLFIPTASGDR------DEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRL-LSVLRET 101 (210)
T ss_pred CCeEEEEeCCCCCh------HHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHH-HHHHHhC
Confidence 46899998766542 13456678899999998877665432 101123477899999999954321 1112221
Q ss_pred -HHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 84 -LCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 84 -~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
..+.+++....+.|+.|+|.|+.+++..
T Consensus 102 ~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 102 PLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred ChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 4444555555899999999999999885
No 140
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.053 Score=44.03 Aligned_cols=140 Identities=14% Similarity=0.064 Sum_probs=78.2
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCC---ceeeEEEEEEecCC
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTG---WDIGLRRVRIVNDL 136 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~---~~~g~~~i~~~~~~ 136 (250)
+.-..||+|||..-+|-..- ...-.+.|....+.+--.||||.|. ++|+.......+ ...|...+.+.+.+
T Consensus 48 ~~T~lLV~pGGaDlpY~~~l-~g~g~a~i~~yvk~GG~fLGiCAG~-----YFg~~~veF~~p~~~~vvgkRdL~fFpGT 121 (253)
T COG4285 48 ETTLLLVFPGGADLPYVQVL-QGLGTARIKNYVKEGGNFLGICAGG-----YFGSAYVEFAEPTGIEVVGKRDLGFFPGT 121 (253)
T ss_pred hceEEEEecCCCCchHHHHh-cchhhhhHHHHHhcCCeEEEEeccc-----cccceEEEEecCCCceeeecccccccCCc
Confidence 35678999999765552210 0112344566677899999999984 677765543222 23456677776655
Q ss_pred CCCCcccccC---------------CCCCceEEEeeeccccc---ccCCccEEEEEcCCCc--eEEEE---E-CCcEEEE
Q 025645 137 APCSFLEDLG---------------EIPGSLSIMECHRDEVW---KVPIGAEVIGFSDKTG--VEMFT---I-GDHILGI 192 (250)
Q Consensus 137 ~~~~l~~~~~---------------~l~~~~~~~~~H~~~v~---~lp~~~~~la~s~~~~--v~~~~---~-~~~~~g~ 192 (250)
...|.|.+.+ +++....+++ ++-+.. +--++.+++|+-++-+ -.|+. . ++.+.-.
T Consensus 122 ~~GP~y~gF~Y~S~~GaRaa~l~~~d~~~~~~~~F-NGG~~F~~aE~~~~v~I~ArY~e~~~~pAAIV~~~vgkG~vvLs 200 (253)
T COG4285 122 ARGPAYAGFSYNSESGARAAPLKFNDFLGDCYAYF-NGGGYFEDAENYPNVEIEARYEELPGKPAAIVSCTVGKGLVVLS 200 (253)
T ss_pred cCCCccCCccccCcccceeeeeeeCCCccceEEEE-cCceEEeccCCCCCcEEEEehhcCCCCceeEEEEEecCccEEEe
Confidence 5566655421 0111111111 111111 1235678888876543 23332 2 4566666
Q ss_pred ecCCCCCHHHHHHH
Q 025645 193 QGHPEYTKDILYNL 206 (250)
Q Consensus 193 QfHPE~~~~~~~~~ 206 (250)
=-|||+.++.++..
T Consensus 201 GpH~Ey~p~~~~~~ 214 (253)
T COG4285 201 GPHPEYLPEFCRNQ 214 (253)
T ss_pred cCChhhchhhccch
Confidence 77999988776643
No 141
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=97.13 E-value=0.016 Score=47.53 Aligned_cols=132 Identities=16% Similarity=0.097 Sum_probs=74.8
Q ss_pred HHHHHHHHh-cCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHH-
Q 025645 29 FNVFVAAFG-EEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQ- 106 (250)
Q Consensus 29 ~~~~~~~l~-~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q- 106 (250)
...+.++|+ +.+.++++.. ..+...++.|+++|.||+.....+. +.....+.++..++.|++++|+..+.-
T Consensus 21 ~~~l~~ll~~~~~~~v~~~~--~~~~~~~~~L~~~Dvvv~~~~~~~~-----l~~~~~~al~~~v~~Ggglv~lH~~~~~ 93 (217)
T PF06283_consen 21 KKALAQLLEESEGFEVTVTE--DPDDLTPENLKGYDVVVFYNTGGDE-----LTDEQRAALRDYVENGGGLVGLHGAATD 93 (217)
T ss_dssp HHHHHHHHHHTTCEEEEECC--SGGCTSHHCHCT-SEEEEE-SSCCG-----S-HHHHHHHHHHHHTT-EEEEEGGGGGC
T ss_pred HHHHHHHhccCCCEEEEEEe--CcccCChhHhcCCCEEEEECCCCCc-----CCHHHHHHHHHHHHcCCCEEEEcccccc
Confidence 456778888 6677766443 2222233468999999999765322 235566777888889999999995442
Q ss_pred ------HHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccccC-CccEEEEEcC
Q 025645 107 ------VLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVP-IGAEVIGFSD 176 (250)
Q Consensus 107 ------lla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~lp-~~~~~la~s~ 176 (250)
-....+||....-+ ..+...|++.+ ..+|+.++ +|+.+.+.-= -|.....| ++..+|++..
T Consensus 94 ~~~~~~~~~~l~Gg~f~~h~---~~~~~~v~~~~--~~HPi~~g---l~~~f~~~DE-~Y~~~~~~~~~~~vL~~~~ 161 (217)
T PF06283_consen 94 SFPDWPEYNELLGGYFKGHP---PPQPFTVRVED--PDHPITRG---LPESFTIYDE-WYYFLRDPRPNVTVLLTAD 161 (217)
T ss_dssp CHTT-HHHHHHHS--SEEEE---CEEEEEEEESS--TTSCCCTT---S-SEEEEEEE-EEES-BS---CEEEEEEEE
T ss_pred cchhHHHHHHeeCccccCCC---CCceEEEEEcC--CCChhhcC---CCCCceEccc-ccccccCCCCCEEEEEEEE
Confidence 23445677654332 23444555443 47899998 7877766322 22222233 4688887765
No 142
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=97.00 E-value=0.0018 Score=51.80 Aligned_cols=51 Identities=22% Similarity=0.102 Sum_probs=40.8
Q ss_pred CCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 58 DLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 58 ~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
+..++|.||||||..... ...+.+.+++++..+.++.|.+||-|..+|+.+
T Consensus 61 ~~~~~D~liipgg~~~~~---~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 61 DAPPLDYLFVVGGLGARR---AVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred ccCCCCEEEEeCCCCccc---cCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 346799999999865332 223568889999889999999999999999975
No 143
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=96.96 E-value=0.0033 Score=51.31 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=51.3
Q ss_pred HHHHhcCCCceEEEEeecCC----------CC-----CCCCCCCcCEEEEcCC-CCCCCCCChhHHHHHHHHHHHHhcCC
Q 025645 33 VAAFGEEGERWDLFRVVEGD----------FP-----DFNDLHKYDGFVISGS-PYDAYGNDNWILKLCFMLQTLDAMQK 96 (250)
Q Consensus 33 ~~~l~~~g~~~~~~~~~~~~----------~~-----~~~~l~~~dglIi~Gg-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (250)
...|++.|+++.+..+.... +| +..+ +.||.+||||| ++..+ ..--..+.+++++..+.++
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~-~~yDviilPGG~~g~e~--L~~~~~v~~lvK~q~~~gk 101 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVD-SKYDVIILPGGLPGAET--LSECEKVVDLVKEQAESGK 101 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhcc-ccccEEEecCCchhhhh--hhhcHHHHHHHHHHHhcCC
Confidence 36789999998876543321 11 1222 68999999999 65422 1112467788888888999
Q ss_pred cEEEEehHHHHHHHH
Q 025645 97 KVLGICFGHQVLCRA 111 (250)
Q Consensus 97 PilGIC~G~Qlla~a 111 (250)
.|..||.|--++..+
T Consensus 102 LIaaICaap~~al~a 116 (247)
T KOG2764|consen 102 LIAAICAAPLTALAA 116 (247)
T ss_pred eEEEeecchHHHHhh
Confidence 999999996444433
No 144
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=96.83 E-value=0.0013 Score=51.69 Aligned_cols=51 Identities=24% Similarity=0.240 Sum_probs=38.8
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
..++|.||||||+.. ......+.+.+++++....+++|.+||-|..+|+++
T Consensus 59 ~~~~D~lvvpg~~~~--~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 59 APDFDILVVPGGPGF--DAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp CSCCSEEEEE-STTH--HHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred cccCCEEEeCCCCCc--hhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 567999999999871 111112567778888888899999999999999997
No 145
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=96.56 E-value=0.0032 Score=52.98 Aligned_cols=98 Identities=14% Similarity=0.099 Sum_probs=64.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCc-eEEEEeecCC-CCC---CCCCCCcCEEEEcCCCCCCCCCChh-
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGER-WDLFRVVEGD-FPD---FNDLHKYDGFVISGSPYDAYGNDNW- 80 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~-~~~---~~~l~~~dglIi~Gg~~~~~~~~~~- 80 (250)
.||+++-+....+. .+.+.+.+.|++.|.+ +.++.+...+ ..+ .+.+.+.|+|+++||....+-. .|
T Consensus 29 ~rI~~iptAS~~~~------~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~-~l~ 101 (250)
T TIGR02069 29 AIIVIITSASEEPR------EVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITS-LLG 101 (250)
T ss_pred ceEEEEeCCCCChH------HHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHH-HHc
Confidence 48999987655332 2445677889999984 5666553211 111 1246789999999996432110 01
Q ss_pred HHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 81 ILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
-..+.+.|+.+.+.+.|+.|+-.|.-+++..
T Consensus 102 ~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 102 DTPLLDRLRKRVHEGIILGGTSAGAAVMSDT 132 (250)
T ss_pred CCcHHHHHHHHHHcCCeEEEccHHHHhcccc
Confidence 1235667888888899999999999988654
No 146
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=96.09 E-value=0.0059 Score=50.32 Aligned_cols=100 Identities=16% Similarity=0.151 Sum_probs=64.3
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCc-eEEEEeecCCCC-C---CCCCCCcCEEEEcCCCCCCCCCChh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGER-WDLFRVVEGDFP-D---FNDLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~-~---~~~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
..||++|.+....+. .+.+.+.+.+++.|.+ +..+.+...+.. + .+.+.++|+|+++||....+-. .|
T Consensus 29 ~~~i~~iptA~~~~~------~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~-~l 101 (217)
T cd03145 29 GARIVVIPAASEEPA------EVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITS-AL 101 (217)
T ss_pred CCcEEEEeCCCcChh------HHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHH-HH
Confidence 468999987655431 2345577888888885 444433211111 1 1246789999999996532211 11
Q ss_pred -HHHHHHHHHHHHhcCCcEEEEehHHHHHHHHc
Q 025645 81 -ILKLCFMLQTLDAMQKKVLGICFGHQVLCRAL 112 (250)
Q Consensus 81 -~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~ 112 (250)
-..+.+.|+.+.+.+.|+.|+-.|.-+++..+
T Consensus 102 ~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~~ 134 (217)
T cd03145 102 GGTPLLDALRKVYRGGVVIGGTSAGAAVMSDTM 134 (217)
T ss_pred cCChHHHHHHHHHHcCCEEEEccHHHHhhhhcc
Confidence 12456778888889999999999999987653
No 147
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.18 E-value=0.11 Score=44.99 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=51.2
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCC----------------CC-CCCCCCcCEEEEcC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDF----------------PD-FNDLHKYDGFVISG 69 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~----------------~~-~~~l~~~dglIi~G 69 (250)
++|+|+.. ...+.... ....+.++|.+.|.++.+........ +. ....+++|.+|.-|
T Consensus 6 ~~I~iv~~-~~~~~~~~----~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lG 80 (306)
T PRK03372 6 RRVLLVAH-TGRDEATE----AARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLG 80 (306)
T ss_pred cEEEEEec-CCCHHHHH----HHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEEc
Confidence 45998853 33333221 23456778888998876643221110 00 11124589999999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHH
Q 025645 70 SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQ 106 (250)
Q Consensus 70 g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q 106 (250)
|-+ .++...+.+...++|||||=.|+-
T Consensus 81 GDG----------T~L~aar~~~~~~~PilGIN~G~l 107 (306)
T PRK03372 81 GDG----------TILRAAELARAADVPVLGVNLGHV 107 (306)
T ss_pred CCH----------HHHHHHHHhccCCCcEEEEecCCC
Confidence 943 234555666667899999999864
No 148
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.16 E-value=0.12 Score=39.99 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=43.8
Q ss_pred CCCcCEEEEcCCCCCCCCCC---------hhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceE
Q 025645 59 LHKYDGFVISGSPYDAYGND---------NWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKV 116 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~---------~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v 116 (250)
.+.+|++|+|||.+.+-.-. ...+++..+.+...+.++|+=-||..--++...+|-.+
T Consensus 83 ~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~ 149 (217)
T COG3155 83 AEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPL 149 (217)
T ss_pred HHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCce
Confidence 35789999999976331110 12356778888888999999999999999999887543
No 149
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=94.92 E-value=0.022 Score=46.22 Aligned_cols=97 Identities=14% Similarity=0.042 Sum_probs=61.6
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-CCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-FNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
++|+-+-+-..... +..|.+-+.++|++.|..+.-+......... ...|.+.|.|.+.||..-..-..-..-++.
T Consensus 33 ~~i~FIPtAs~~~~----~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~lke~gld 108 (224)
T COG3340 33 KTIAFIPTASVDSE----DDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELKETGLD 108 (224)
T ss_pred ceEEEEecCccccc----hHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHHHHhCcH
Confidence 47888764433221 2336677788999999988877655432111 112445899999999532100001123467
Q ss_pred HHHHHHHhcCCcEEEEehHHHH
Q 025645 86 FMLQTLDAMQKKVLGICFGHQV 107 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Ql 107 (250)
++|++..++|+|..|+-.|.-+
T Consensus 109 ~iIr~~vk~G~~YiG~SAGA~i 130 (224)
T COG3340 109 DIIRERVKAGTPYIGWSAGANI 130 (224)
T ss_pred HHHHHHHHcCCceEEeccCcee
Confidence 8899999999999999887533
No 150
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=94.87 E-value=0.64 Score=40.66 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=38.0
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
...+|-+++.||..... ..-.+.+.++++.+...+.++.|||-|.-+|+.+
T Consensus 74 ~~~~~~v~v~~g~~~~~--~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 74 APPIDILPVCGGLGPER--PVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred cCcceEEEEecCCCccc--ccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 34578888866643221 1112568889999999999999999999999997
No 151
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=94.13 E-value=0.0032 Score=48.96 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCCceEEEEeecCCCC-CCCCCCCcCEEEEcCCCCCCCCCChh-HHHHHHHHHHHHhcCCcEEEEehHHH
Q 025645 29 FNVFVAAFGEEGERWDLFRVVEGDFP-DFNDLHKYDGFVISGSPYDAYGNDNW-ILKLCFMLQTLDAMQKKVLGICFGHQ 106 (250)
Q Consensus 29 ~~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~l~~~dglIi~Gg~~~~~~~~~~-~~~~~~~i~~~~~~~~PilGIC~G~Q 106 (250)
...+.+.|++.|+++..+.+...+.. ..+.+.++|+|+++||....+-. .| -..+.+.|+.+...|+++.|+-.|+-
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~-~l~~t~l~~~i~~~~~~G~vi~G~SAGA~ 80 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLR-QLKETGLDEAIREAYRKGGVIIGTSAGAM 80 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHH-HHHHTTHHHHHHHHHHTTSEEEEETHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHH-HHHhCCHHHHHHHHHHCCCEEEEEChHHh
Confidence 44567889999988766654332111 11235678999999995322100 11 12367788888888999999999986
Q ss_pred HH
Q 025645 107 VL 108 (250)
Q Consensus 107 ll 108 (250)
++
T Consensus 81 i~ 82 (154)
T PF03575_consen 81 IL 82 (154)
T ss_dssp CT
T ss_pred hc
Confidence 64
No 152
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.02 E-value=0.16 Score=37.79 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=31.4
Q ss_pred CCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEeh
Q 025645 55 DFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICF 103 (250)
Q Consensus 55 ~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~ 103 (250)
+.++++++|.||+.||-..+.-.. -..+..+++.+ ..++|+.|+|+
T Consensus 79 e~e~~n~aDvvVLlGGLaMP~~gv-~~d~~kel~ee--~~~kkliGvCf 124 (154)
T COG4090 79 EREELNSADVVVLLGGLAMPKIGV-TPDDAKELLEE--LGNKKLIGVCF 124 (154)
T ss_pred CccccccccEEEEEcccccCcCCC-CHHHHHHHHHh--cCCCceEEeeH
Confidence 455678899999999976542221 13556666663 34679999996
No 153
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.63 E-value=0.42 Score=41.21 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=50.3
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC----------CC---CCCCC-CCcCEEEEcCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD----------FP---DFNDL-HKYDGFVISGSPY 72 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----------~~---~~~~l-~~~dglIi~Gg~~ 72 (250)
|+|+|+.. ...+.... ....+.++|++.|+++.+....... .+ +...+ +.+|.+|.-||-+
T Consensus 1 m~igii~~-~~~~~~~~----~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG 75 (292)
T PRK01911 1 MKIAIFGQ-TYQESASP----YIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDG 75 (292)
T ss_pred CEEEEEeC-CCCHHHHH----HHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCcH
Confidence 46888853 33333221 3345677888899887654321110 00 00122 3589999999943
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 73 DAYGNDNWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 73 ~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
. ++...+.+...++|||||=.|.
T Consensus 76 T----------~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 76 T----------FLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred H----------HHHHHHHhcCCCCCEEEEecCC
Confidence 2 3445566656789999999997
No 154
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.06 E-value=0.82 Score=39.51 Aligned_cols=84 Identities=12% Similarity=0.117 Sum_probs=50.6
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC----------CC--CCCCCC-CCcCEEEEcCCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG----------DF--PDFNDL-HKYDGFVISGSPYD 73 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~----------~~--~~~~~l-~~~dglIi~Gg~~~ 73 (250)
+||+|+.. ...+.... ....+.++|.+.|+++.+...... .. .+..++ .++|.+|.-||-+
T Consensus 6 ~~i~ii~~-~~~~~~~~----~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDG- 79 (296)
T PRK04539 6 HNIGIVTR-PNTPDIQD----TAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDG- 79 (296)
T ss_pred CEEEEEec-CCCHHHHH----HHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCcH-
Confidence 46999853 33433222 334567889899988765421110 00 011222 3589999999843
Q ss_pred CCCCChhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 74 AYGNDNWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 74 ~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
.++...+.+...++||+||=.|.
T Consensus 80 ---------T~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 80 ---------TFLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred ---------HHHHHHHHhcccCCCEEEEecCC
Confidence 23445555556789999999997
No 155
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.91 E-value=0.79 Score=39.54 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=50.0
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCC--C-----C-CCCCCCcCEEEEcCCCCCCCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDF--P-----D-FNDLHKYDGFVISGSPYDAYGND 78 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--~-----~-~~~l~~~dglIi~Gg~~~~~~~~ 78 (250)
++|+|+.. ...+.... ....+.++|++.|+++.+........ + + .+..+++|.+|.-||-+.
T Consensus 6 ~~i~iv~~-~~~~~~~~----~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDGT----- 75 (292)
T PRK03378 6 KCIGIVGH-PRHPTALT----THEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDGN----- 75 (292)
T ss_pred CEEEEEEe-CCCHHHHH----HHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcHH-----
Confidence 46888853 33333221 23456778888898776532111111 0 1 111236899999999433
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 79 NWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 79 ~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
+....+.+...++||+||-.|.
T Consensus 76 -----~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 76 -----MLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred -----HHHHHHHhcCCCCeEEEEECCC
Confidence 3445555555689999999998
No 156
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.67 E-value=0.77 Score=39.29 Aligned_cols=83 Identities=14% Similarity=0.104 Sum_probs=49.8
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeec---CCCCCC--CC--CCCcCEEEEcCCCCCCCCCCh
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVE---GDFPDF--ND--LHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~~~~~~--~~--l~~~dglIi~Gg~~~~~~~~~ 79 (250)
|||+|+.. ...+.... ....+.++|++.|.++.+..... +..... .. ..++|.+|..||-+.
T Consensus 1 m~v~iv~~-~~k~~~~~----~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT------ 69 (277)
T PRK03708 1 MRFGIVAR-RDKEEALK----LAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGT------ 69 (277)
T ss_pred CEEEEEec-CCCHHHHH----HHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHH------
Confidence 57888853 33332221 23456788999998877653211 111110 01 136899999999433
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 80 WILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
+.+.++ ....++||+||=.|.
T Consensus 70 ----lL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 70 ----ILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred ----HHHHHH-hcCCCCeEEEEeCCC
Confidence 344556 556689999999997
No 157
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.28 E-value=0.8 Score=43.33 Aligned_cols=88 Identities=8% Similarity=0.177 Sum_probs=52.7
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC--------CCCCCCCcCEEEEcCCCCCCC
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP--------DFNDLHKYDGFVISGSPYDAY 75 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~--------~~~~l~~~dglIi~Gg~~~~~ 75 (250)
.+++||+|+.. ...+.... ....+.++|.+.|.++.+.......+. ...++.++|.+|.-||-+.
T Consensus 288 ~~~~~i~iv~~-~~~~~~~~----~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT-- 360 (569)
T PRK14076 288 IKPTKFGIVSR-IDNEEAIN----LALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDGT-- 360 (569)
T ss_pred cCCcEEEEEcC-CCCHHHHH----HHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcHH--
Confidence 45778999853 33333221 234567788888887655321111100 0122446899999999432
Q ss_pred CCChhHHHHHHHHHHHHhcCCcEEEEehHHH
Q 025645 76 GNDNWILKLCFMLQTLDAMQKKVLGICFGHQ 106 (250)
Q Consensus 76 ~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q 106 (250)
++...+.+...++|||||=.|..
T Consensus 361 --------~L~aa~~~~~~~~PilGin~G~l 383 (569)
T PRK14076 361 --------VLRASKLVNGEEIPIICINMGTV 383 (569)
T ss_pred --------HHHHHHHhcCCCCCEEEEcCCCC
Confidence 34455666567899999999863
No 158
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.65 E-value=1 Score=38.92 Aligned_cols=84 Identities=19% Similarity=0.108 Sum_probs=49.9
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC-------CCCCC-CCcCEEEEcCCCCCCCCCCh
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP-------DFNDL-HKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-------~~~~l-~~~dglIi~Gg~~~~~~~~~ 79 (250)
+|+|+. +...+..... ...+.++|++.|.++.+.......++ ....+ +.+|.+|.-||-+.
T Consensus 6 ~v~iv~-~~~k~~a~e~----~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt------ 74 (295)
T PRK01231 6 NIGLIG-RLGSSSVVET----LRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGS------ 74 (295)
T ss_pred EEEEEe-cCCCHHHHHH----HHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHH------
Confidence 588884 4444433322 34467788888988766542211111 11122 35889999998443
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEehHHH
Q 025645 80 WILKLCFMLQTLDAMQKKVLGICFGHQ 106 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGIC~G~Q 106 (250)
+....+.+...++||+||=.|+-
T Consensus 75 ----~l~~~~~~~~~~~Pvlgin~G~l 97 (295)
T PRK01231 75 ----LLGAARALARHNVPVLGINRGRL 97 (295)
T ss_pred ----HHHHHHHhcCCCCCEEEEeCCcc
Confidence 33445555567899999999873
No 159
>PLN02929 NADH kinase
Probab=91.35 E-value=0.58 Score=40.42 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=43.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 27 GYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 27 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
+..+.+.++|++.|+++..+. ..++ ...+.++|.+|.-||-+. ++...+.+ ..++||+||=.|
T Consensus 34 ~~~~~~~~~L~~~gi~~~~v~--r~~~--~~~~~~~Dlvi~lGGDGT----------~L~aa~~~-~~~iPvlGIN~G 96 (301)
T PLN02929 34 DTVNFCKDILQQKSVDWECVL--RNEL--SQPIRDVDLVVAVGGDGT----------LLQASHFL-DDSIPVLGVNSD 96 (301)
T ss_pred HHHHHHHHHHHHcCCEEEEee--cccc--ccccCCCCEEEEECCcHH----------HHHHHHHc-CCCCcEEEEECC
Confidence 344567789999999885543 2232 233567899999999443 33444555 678999999988
No 160
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.86 E-value=1.5 Score=38.06 Aligned_cols=85 Identities=9% Similarity=0.022 Sum_probs=50.3
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCC--C--------------CCCCC-CCcCEEEEcC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDF--P--------------DFNDL-HKYDGFVISG 69 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--~--------------~~~~l-~~~dglIi~G 69 (250)
++|+|+.. ...+.... ....+.++|++.|.++.+........ + ....+ +++|.+|.-|
T Consensus 2 ~~igiv~n-~~~~~~~~----~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iG 76 (305)
T PRK02649 2 PKAGIIYN-DGKPLAVR----TAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVLG 76 (305)
T ss_pred CEEEEEEc-CCCHHHHH----HHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEEe
Confidence 36888853 34433221 23456778889998876533111100 0 00122 3589999999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHH
Q 025645 70 SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQ 106 (250)
Q Consensus 70 g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q 106 (250)
|-+ .++...+.+...++|||||=.|.-
T Consensus 77 GDG----------TlL~aar~~~~~~iPilGIN~G~l 103 (305)
T PRK02649 77 GDG----------TVLSAARQLAPCGIPLLTINTGHL 103 (305)
T ss_pred CcH----------HHHHHHHHhcCCCCcEEEEeCCCC
Confidence 943 344555666667899999998853
No 161
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=90.40 E-value=2.2 Score=33.82 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHH--hcCCcEEEEehH
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLD--AMQKKVLGICFG 104 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~--~~~~PilGIC~G 104 (250)
..+.+.|.. |.+++++.+...+ ..++.+||.||+.++-. . .. +......+++... -.++|+.-+|.|
T Consensus 19 ~~Ia~~l~~-g~~v~~~~~~~~~---~~~l~~yD~vIlGspi~-~-G~--~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 19 SYIASELKE-GIQCDVVNLHRIE---EPDLSDYDRVVIGASIR-Y-GH--FHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred HHHHHHhCC-CCeEEEEEhhhcC---ccCHHHCCEEEEECccc-c-CC--cCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 345566766 7788777654322 23578899977765432 1 11 1234444554322 247888887777
No 162
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=90.35 E-value=1.7 Score=37.49 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=49.7
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-----CC--CCCCC-CCcCEEEEcCCCCCCCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-----FP--DFNDL-HKYDGFVISGSPYDAYGND 78 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-----~~--~~~~l-~~~dglIi~Gg~~~~~~~~ 78 (250)
++|+|+.. ...+.... ....+.++|++.|.++.+....... ++ ...++ +++|.+|.-||-+.
T Consensus 6 ~~v~iv~~-~~~~~~~e----~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt----- 75 (291)
T PRK02155 6 KTVALIGR-YQTPGIAE----PLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDGT----- 75 (291)
T ss_pred CEEEEEec-CCCHHHHH----HHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcHH-----
Confidence 45888853 33333222 2345677888888876553211110 11 11122 35899999998433
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 79 NWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 79 ~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
+.+.++.+...++|+|||=.|+
T Consensus 76 -----~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 76 -----MLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred -----HHHHHHHhcCCCCCEEEEcCCC
Confidence 3455566656789999999997
No 163
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.19 E-value=1.7 Score=37.38 Aligned_cols=83 Identities=16% Similarity=0.077 Sum_probs=49.8
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC----CCCC-CCCcCEEEEcCCCCCCCCCChhH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP----DFND-LHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~----~~~~-l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
++|+|+.... . ... .....+.++|++.|.++.+.......+. ...+ .+++|.+|.-||-+
T Consensus 11 ~~i~ii~~~~-~-~~~----~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDG--------- 75 (287)
T PRK14077 11 KKIGLVTRPN-V-SLD----KEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDG--------- 75 (287)
T ss_pred CEEEEEeCCc-H-HHH----HHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCH---------
Confidence 4699985433 2 222 1334567788888887765432111100 1112 23689999999843
Q ss_pred HHHHHHHHHHHhcCCcEEEEehHH
Q 025645 82 LKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
.++...+.+...++|||||=.|.
T Consensus 76 -T~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 76 -TLISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred -HHHHHHHHhcCCCCcEEEEeCCC
Confidence 23455566666789999999997
No 164
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.92 E-value=2.5 Score=36.74 Aligned_cols=86 Identities=13% Similarity=0.046 Sum_probs=50.2
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC----CCCCCCcCEEEEcCCCCCCCCCChh
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD----FNDLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~----~~~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
+.+|++++.. +..+.... ....+.++|++.|.++.+........+. ......+|.+|.-||-+.
T Consensus 2 ~~kkv~lI~n-~~~~~~~~----~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT------- 69 (305)
T PRK02645 2 QLKQVIIAYK-AGSSQAKE----AAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGT------- 69 (305)
T ss_pred CcCEEEEEEe-CCCHHHHH----HHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHH-------
Confidence 3456888754 34433222 2234567788899887665432211110 111235899999998443
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeh-HH
Q 025645 81 ILKLCFMLQTLDAMQKKVLGICF-GH 105 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGIC~-G~ 105 (250)
+.+.++.....++|++||=. |.
T Consensus 70 ---~l~~~~~~~~~~~pv~gin~~G~ 92 (305)
T PRK02645 70 ---VLAAARHLAPHDIPILSVNVGGH 92 (305)
T ss_pred ---HHHHHHHhccCCCCEEEEecCCc
Confidence 34455555567899999998 54
No 165
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=89.85 E-value=0.91 Score=35.57 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=42.7
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC----CCC---CCCcCEEEEcCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD----FND---LHKYDGFVISGSPY 72 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~----~~~---l~~~dglIi~Gg~~ 72 (250)
.+.|++|+..++... ..+..-..++..+|++.|.++..+.+..++... ... .+++|.||++||.+
T Consensus 3 ~~~rv~vit~~d~~~---~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 3 IPLRIAILTVSDTRT---EEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred CccEEEEEEEeCcCC---ccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 357899998766432 234444567888999999988776665543211 001 24699999999854
No 166
>PRK09271 flavodoxin; Provisional
Probab=88.86 E-value=6.9 Score=30.32 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCC-CCCCCCcCEEEEcC
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPD-FNDLHKYDGFVISG 69 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~l~~~dglIi~G 69 (250)
..+.+.|+..|.++++..+...+..+ ..++.++|+|||..
T Consensus 19 ~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt 59 (160)
T PRK09271 19 REIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGT 59 (160)
T ss_pred HHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEEC
Confidence 34567788889888766544332211 23456789888875
No 167
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.63 E-value=1.6 Score=37.03 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=44.2
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
|+|+|+.. ..+.... ....+.++|++.|+++. .+++|.+|.-||-+. ++.
T Consensus 1 M~i~Ii~~--~~~~~~~----~~~~l~~~l~~~g~~~~--------------~~~~Dlvi~iGGDGT----------~L~ 50 (265)
T PRK04885 1 MKVAIISN--GDPKSKR----VASKLKKYLKDFGFILD--------------EKNPDIVISVGGDGT----------LLS 50 (265)
T ss_pred CEEEEEeC--CCHHHHH----HHHHHHHHHHHcCCccC--------------CcCCCEEEEECCcHH----------HHH
Confidence 46888854 3333222 23446677888887621 135799999999432 344
Q ss_pred HHHHHHh--cCCcEEEEehHHH
Q 025645 87 MLQTLDA--MQKKVLGICFGHQ 106 (250)
Q Consensus 87 ~i~~~~~--~~~PilGIC~G~Q 106 (250)
..+.+.. .++|++||=.|+-
T Consensus 51 a~~~~~~~~~~iPilGIN~G~l 72 (265)
T PRK04885 51 AFHRYENQLDKVRFVGVHTGHL 72 (265)
T ss_pred HHHHhcccCCCCeEEEEeCCCc
Confidence 4555554 5899999999863
No 168
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.24 E-value=3.6 Score=35.11 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=41.8
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC----CCCCCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP----DFNDLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~----~~~~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
|||+|+.. ...+.... ....+.++| +.|.++........... ..... ++|.+|.-||-+.
T Consensus 1 m~i~iv~~-~~~~~~~~----~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~-~~D~vi~lGGDGT--------- 64 (271)
T PRK01185 1 MKVAFVIR-KDCKRCIK----IAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEI-NADVIITIGGDGT--------- 64 (271)
T ss_pred CEEEEEec-CCCHHHHH----HHHHHHHHH-hcCCEEEEechhhhhcCcccCccccc-CCCEEEEEcCcHH---------
Confidence 46888854 33333221 223456666 45766544321111111 11222 6899999999443
Q ss_pred HHHHHHHHHHhcCCcEEEEehHH
Q 025645 83 KLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
+++.+.....||+||=.|.
T Consensus 65 ----~L~a~~~~~~PilGIN~G~ 83 (271)
T PRK01185 65 ----ILRTLQRAKGPILGINMGG 83 (271)
T ss_pred ----HHHHHHHcCCCEEEEECCC
Confidence 2233333457999999994
No 169
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=87.17 E-value=5.2 Score=31.21 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=54.2
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
||++|+-...+-.. +.+..-++..|++.|+++++.+...-..+ ++.+||+|||.-+-. ...|...+..
T Consensus 1 Mk~LIlYstr~GqT-----~kIA~~iA~~L~e~g~qvdi~dl~~~~~~---~l~~ydavVIgAsI~----~~h~~~~~~~ 68 (175)
T COG4635 1 MKTLILYSTRDGQT-----RKIAEYIASHLRESGIQVDIQDLHAVEEP---ALEDYDAVVIGASIR----YGHFHEAVQS 68 (175)
T ss_pred CceEEEEecCCCcH-----HHHHHHHHHHhhhcCCeeeeeehhhhhcc---ChhhCceEEEecchh----hhhhHHHHHH
Confidence 46777754433211 12334567889999999998875543333 478999999975421 2234556666
Q ss_pred HHHHHHh--cCCcEEEEehHH
Q 025645 87 MLQTLDA--MQKKVLGICFGH 105 (250)
Q Consensus 87 ~i~~~~~--~~~PilGIC~G~ 105 (250)
++++-.+ ..+|.--+|.+.
T Consensus 69 Fv~k~~e~L~~kP~A~f~vnl 89 (175)
T COG4635 69 FVKKHAEALSTKPSAFFSVNL 89 (175)
T ss_pred HHHHHHHHHhcCCceEEEeeh
Confidence 7765433 378888888763
No 170
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=86.13 E-value=14 Score=30.33 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=31.5
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceE
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKV 116 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v 116 (250)
.++|++||. ++++ | ..+.+|+. ..+|++|||-..-..|...|-++
T Consensus 68 ~GvdaiiIa-----Cf~D-P----gl~~~Re~--~~~PviGi~eAsv~~A~~vgrrf 112 (230)
T COG4126 68 QGVDAIIIA-----CFSD-P----GLAAARER--AAIPVIGICEASVLAALFVGRRF 112 (230)
T ss_pred cCCcEEEEE-----ecCC-h----HHHHHHHH--hCCCceehhHHHHHHHHHhcceE
Confidence 468999986 4444 3 23334443 36999999999998888877554
No 171
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=85.24 E-value=11 Score=27.50 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=39.6
Q ss_pred HHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 32 FVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
+...+...|..+..+............+..-|.+|+..-++.. ....+.++.+.+.+.|+++|+-.
T Consensus 18 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t-------~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 18 IAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGET-------DELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred HHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCC-------HHHHHHHHHHHHCCCeEEEEeCC
Confidence 4566677787776553211111111233444667766433322 46778888899999999999964
No 172
>PRK01215 competence damage-inducible protein A; Provisional
Probab=84.95 E-value=1.6 Score=37.10 Aligned_cols=69 Identities=12% Similarity=0.016 Sum_probs=41.9
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCCC
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPYD 73 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~~ 73 (250)
|.++|++|+..+..-- .-..+..-..++.+.|.+.|.++....+..++... ...++.+|.||++||-+.
T Consensus 1 ~~~~~v~Ii~~GdEll-~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~ 74 (264)
T PRK01215 1 MDKWFAWIITIGNELL-IGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLGP 74 (264)
T ss_pred CCCCEEEEEEEChhcc-CCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 4457899988764311 11122233456788999999998766554443221 012346799999998654
No 173
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=84.57 E-value=0.83 Score=34.92 Aligned_cols=42 Identities=26% Similarity=0.375 Sum_probs=27.4
Q ss_pred CCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEeh
Q 025645 58 DLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICF 103 (250)
Q Consensus 58 ~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~ 103 (250)
+++ +|.|||.||-.-+.... -.+...+++.+... +.+.|||+
T Consensus 78 ~~~-~D~vVlmGGLAMP~~~v-~~e~v~~li~ki~~--~~iiGiCF 119 (147)
T PF09897_consen 78 DPH-PDVVVLMGGLAMPKSGV-TPEDVNELIKKISP--KKIIGICF 119 (147)
T ss_dssp -S--EEEEEEEGGGGSTTTS---HHHHHHHHHHHEE--EEEEEEEE
T ss_pred CCC-CCEEEEEcccccCCCCC-CHHHHHHHHHHhCc--CCEEEEeh
Confidence 345 89999999965543221 14567777777654 34999997
No 174
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=84.23 E-value=7 Score=36.26 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=49.1
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHh-cCCCceEEEEeecCC---------CC----CCCC---C-CCcCEEE
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFG-EEGERWDLFRVVEGD---------FP----DFND---L-HKYDGFV 66 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~---------~~----~~~~---l-~~~dglI 66 (250)
.+++|+|+.- +..+.... ....+.++|+ ..|+++.+-...... .+ .... + .++|.+|
T Consensus 193 ~p~~VgIV~n-~~k~~a~e----l~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVI 267 (508)
T PLN02935 193 DPQTVLIITK-PNSTSVRV----LCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVI 267 (508)
T ss_pred CCCEEEEEec-CCCHHHHH----HHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEE
Confidence 4667888853 34433322 2344567777 477776543211000 00 0011 2 3689999
Q ss_pred EcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHH
Q 025645 67 ISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQ 106 (250)
Q Consensus 67 i~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q 106 (250)
.-||-+. ++...+.+...++|||||=.|..
T Consensus 268 siGGDGT----------lL~Aar~~~~~~iPILGIN~G~L 297 (508)
T PLN02935 268 TLGGDGT----------VLWAASMFKGPVPPVVPFSMGSL 297 (508)
T ss_pred EECCcHH----------HHHHHHHhccCCCcEEEEeCCCc
Confidence 9999433 34455555566899999998853
No 175
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=84.03 E-value=1.5 Score=30.09 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=27.0
Q ss_pred HHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCC
Q 025645 32 FVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYD 73 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~ 73 (250)
+.++|++.|.++.... ...++.++|++|++|-..+
T Consensus 13 v~~~L~~~GyeVv~l~-------~~~~~~~~daiVvtG~~~n 47 (80)
T PF03698_consen 13 VKEALREKGYEVVDLE-------NEQDLQNVDAIVVTGQDTN 47 (80)
T ss_pred HHHHHHHCCCEEEecC-------CccccCCcCEEEEECCCcc
Confidence 5689999999876654 3345789999999997554
No 176
>PLN02727 NAD kinase
Probab=83.90 E-value=4.8 Score=39.96 Aligned_cols=86 Identities=13% Similarity=0.041 Sum_probs=49.1
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcC-CCceEEEEeecCCC---C-----------CCCC-CCCcCEEEEc
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEE-GERWDLFRVVEGDF---P-----------DFND-LHKYDGFVIS 68 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~---~-----------~~~~-l~~~dglIi~ 68 (250)
..++|+|+.-..+ .... ....+.++|.+. |+++.+-.-....+ + +..+ .+++|.+|.-
T Consensus 677 p~rtVgIV~K~~~--ea~~----~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvL 750 (986)
T PLN02727 677 TPKTVLLLKKLGQ--ELME----EAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACL 750 (986)
T ss_pred CCCEEEEEcCCcH--HHHH----HHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEE
Confidence 4567888864433 2222 123457788776 77654321111100 0 0011 2358999999
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHH
Q 025645 69 GSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQ 106 (250)
Q Consensus 69 Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q 106 (250)
||-+. ++...+.+...++|||||=+|.-
T Consensus 751 GGDGT----------lLrAar~~~~~~iPILGINlGrL 778 (986)
T PLN02727 751 GGDGV----------ILHASNLFRGAVPPVVSFNLGSL 778 (986)
T ss_pred CCcHH----------HHHHHHHhcCCCCCEEEEeCCCc
Confidence 99433 34455666667899999999874
No 177
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=83.76 E-value=7.3 Score=32.94 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCc
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKK 97 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~P 97 (250)
..+...|++. .++..+.....+.| +++|.|||.|..... .......|++++..|.+
T Consensus 172 ~~l~~~L~~~-y~V~~~~l~~~~IP-----~~~d~Lvi~~P~~~l------s~~e~~~l~~yl~~GG~ 227 (271)
T PF09822_consen 172 SSLKSLLEKN-YDVEELNLANEEIP-----DDADVLVIAGPKTDL------SEEELYALDQYLMNGGK 227 (271)
T ss_pred HHHHHHHHhc-CceeecCCcccccC-----CCCCEEEEECCCCCC------CHHHHHHHHHHHHcCCe
Confidence 4567888888 88777765433333 579999999754322 24566677777666443
No 178
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=83.69 E-value=1.1 Score=34.15 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=40.5
Q ss_pred ceEEEEecCCCChh------HHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCCC
Q 025645 7 KRYALFLAAKDSDY------VLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPYD 73 (250)
Q Consensus 7 ~riail~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~~ 73 (250)
+|++|+.++..--. .-..+.....++...|++.|.++....+..++... ...++++|.||.+||.+-
T Consensus 1 prv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~ 78 (144)
T TIGR00177 1 PRVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGV 78 (144)
T ss_pred CEEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 36788776543110 11233444557888999999988776655443211 011357899999998553
No 179
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=82.95 E-value=25 Score=28.91 Aligned_cols=125 Identities=15% Similarity=0.100 Sum_probs=70.2
Q ss_pred hhHHHhhCCHH-HHHHHHHhcCCCceEEEEeecCCC-CCCCCCCCcCEEEEcCCCC-CCCCCChhHHHHHHHHHHHHhcC
Q 025645 19 DYVLKVYGGYF-NVFVAAFGEEGERWDLFRVVEGDF-PDFNDLHKYDGFVISGSPY-DAYGNDNWILKLCFMLQTLDAMQ 95 (250)
Q Consensus 19 ~~~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~l~~~dglIi~Gg~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (250)
+.+...|.+.. +.++..|++.|.++++....+.+. .+++.|+++|.||+-+-.. +.. .+...+-+.++.+.|
T Consensus 14 ~~~~~~~~~~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~~l-----~~eq~~~l~~~V~~G 88 (215)
T cd03142 14 EAVAALYPDGMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHDEV-----KDEIVERVHRRVLDG 88 (215)
T ss_pred hhhHhhCcchHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcCcC-----CHHHHHHHHHHHHcC
Confidence 44556665544 678899999998887553332221 2334589999999843221 111 133444556667778
Q ss_pred CcEEEEehHHHH--HHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEE
Q 025645 96 KKVLGICFGHQV--LCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSI 154 (250)
Q Consensus 96 ~PilGIC~G~Ql--la~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~ 154 (250)
.=++|+=-|+-- .....||....... +......+.+.+ ..+|+.++ +|+.+..
T Consensus 89 gGlv~lHsg~~s~~y~~lvGg~f~~~~h-~~~~~~~v~v~~--p~HPIt~G---l~~~f~~ 143 (215)
T cd03142 89 MGLIVLHSGHYSKIFKKLMGTTCTLKWR-EAGERERVWVVE--PGHPITDG---IPEYIEL 143 (215)
T ss_pred CCEEEECCCcCCHHHHHhhCCcccceec-CCCceeEEEEec--CCCchhcC---CCCcccc
Confidence 888888776631 11235665311100 112234555553 36788888 7765433
No 180
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=82.76 E-value=0.56 Score=35.84 Aligned_cols=91 Identities=16% Similarity=0.241 Sum_probs=48.9
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC-------------C-----CCCCCCcCEEEEc
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP-------------D-----FNDLHKYDGFVIS 68 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-------------~-----~~~l~~~dglIi~ 68 (250)
|||++|..+...+-... ...+.+.+.+++.|++++++++.....| + .+.+..+|++|+.
T Consensus 1 Mkilii~gS~r~~~~t~---~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~ 77 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTR---KLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFA 77 (152)
T ss_dssp -EEEEEESSSSTTSHHH---HHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEE
T ss_pred CEEEEEECcCCCCCHHH---HHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEe
Confidence 58999987764321111 1224455667777999998886543111 0 1124568999987
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHH------hcCCcEEEEehH
Q 025645 69 GSPYDAYGNDNWILKLCFMLQTLD------AMQKKVLGICFG 104 (250)
Q Consensus 69 Gg~~~~~~~~~~~~~~~~~i~~~~------~~~~PilGIC~G 104 (250)
- |.-.+.- -..++.++.++. -.+||+..||.|
T Consensus 78 s-P~y~~~~---s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 78 S-PVYNGSV---SGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp E-EEBTTBE----HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred e-cEEcCcC---ChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 3 2111111 133444555443 247888888654
No 181
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.17 E-value=1.5 Score=42.84 Aligned_cols=100 Identities=21% Similarity=0.342 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeee
Q 025645 79 NWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECH 158 (250)
Q Consensus 79 ~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H 158 (250)
.|.-++--+|.++.+++-||=||||=.+-=-=.-||.-.+.. .|....+++.++ |.+. + +-++..++|
T Consensus 35 lWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIk-VWnYk~rrclft-------L~GH---l-DYVRt~~FH 102 (1202)
T KOG0292|consen 35 LWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIK-VWNYKTRRCLFT-------LLGH---L-DYVRTVFFH 102 (1202)
T ss_pred eehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEE-EEecccceehhh-------hccc---c-ceeEEeecc
Confidence 355577788999999999999999865422112233322221 122222222222 2333 1 456677777
Q ss_pred cccccccCCccEEEEEcCCCceEEEE-----------ECCc-EEEEecCC-C
Q 025645 159 RDEVWKVPIGAEVIGFSDKTGVEMFT-----------IGDH-ILGIQGHP-E 197 (250)
Q Consensus 159 ~~~v~~lp~~~~~la~s~~~~v~~~~-----------~~~~-~~g~QfHP-E 197 (250)
+.. | + +++.|+|..+.... .-++ +.+-|||| |
T Consensus 103 hey----P--W-IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 103 HEY----P--W-ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE 147 (1202)
T ss_pred CCC----c--e-EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc
Confidence 765 2 2 44444444433322 1233 88999999 6
No 182
>PRK03094 hypothetical protein; Provisional
Probab=81.98 E-value=2.1 Score=29.30 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=26.2
Q ss_pred HHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCC
Q 025645 32 FVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYD 73 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~ 73 (250)
+.+.|++.|.++..+. ...+.+++|++|++|-..+
T Consensus 13 i~~~L~~~GYeVv~l~-------~~~~~~~~Da~VitG~d~n 47 (80)
T PRK03094 13 VQQALKQKGYEVVQLR-------SEQDAQGCDCCVVTGQDSN 47 (80)
T ss_pred HHHHHHHCCCEEEecC-------cccccCCcCEEEEeCCCcc
Confidence 5789999999886654 2234678999999996543
No 183
>PRK06756 flavodoxin; Provisional
Probab=81.84 E-value=13 Score=28.20 Aligned_cols=55 Identities=13% Similarity=0.370 Sum_probs=32.7
Q ss_pred ceEEEEecCC-CChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcC
Q 025645 7 KRYALFLAAK-DSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISG 69 (250)
Q Consensus 7 ~riail~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~G 69 (250)
+||.|+-.+. .+-. .....+.+.+++.|.+++++.+... +...++.++|+||+.-
T Consensus 2 mkv~IiY~S~tGnTe------~vA~~ia~~l~~~g~~v~~~~~~~~--~~~~~~~~~d~vi~gs 57 (148)
T PRK06756 2 SKLVMIFASMSGNTE------EMADHIAGVIRETENEIEVIDIMDS--PEASILEQYDGIILGA 57 (148)
T ss_pred ceEEEEEECCCchHH------HHHHHHHHHHhhcCCeEEEeehhcc--CCHHHHhcCCeEEEEe
Confidence 4788876432 2211 1223456677778888887765432 2234577899987764
No 184
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=80.81 E-value=2.2 Score=32.94 Aligned_cols=64 Identities=14% Similarity=0.097 Sum_probs=39.1
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----CCCC--CcCEEEEcCCCC
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----NDLH--KYDGFVISGSPY 72 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~l~--~~dglIi~Gg~~ 72 (250)
|++|+..+..... -..+.....++.++|++.|.++..+.+..++.... ..++ .+|.||.+||.+
T Consensus 2 ~~~ii~~~~e~~~-g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s 72 (152)
T cd00886 2 RAAVLTVSDTRSA-GEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG 72 (152)
T ss_pred EEEEEEEcCcccC-CCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 6788775543221 12233445578889999999877666554432110 0123 689999999854
No 185
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=80.40 E-value=6.8 Score=31.63 Aligned_cols=68 Identities=7% Similarity=-0.056 Sum_probs=35.8
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceE-E-EEeecCCCCC-----CCCC--CCcCEEEEcCCCC
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWD-L-FRVVEGDFPD-----FNDL--HKYDGFVISGSPY 72 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~-~~~~~~~~~~-----~~~l--~~~dglIi~Gg~~ 72 (250)
|..+|++||..++.... -..+..-...+..+|++.|.+.. + +.+.+++... ...+ +++|.||.+||-+
T Consensus 1 ~~~~~~aIItvSd~~~~-G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg 77 (193)
T PRK09417 1 MDTLKIGLVSISDRASS-GVYEDKGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTG 77 (193)
T ss_pred CCCcEEEEEEEcCcCCC-CceeechHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 34578999986653110 01222334567788888865421 1 1222222110 0112 3689999999854
No 186
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=80.36 E-value=7.6 Score=29.76 Aligned_cols=94 Identities=13% Similarity=0.164 Sum_probs=49.1
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCC---ceEEEEeec-CCCCCC----CCCCCcCEEEEcCC--CCC
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGE---RWDLFRVVE-GDFPDF----NDLHKYDGFVISGS--PYD 73 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~-~~~~~~----~~l~~~dglIi~Gg--~~~ 73 (250)
|+.+||||+......+- .+. ...-..+.|.+.|. +++++++.. -+.|-. ..-.+|||+|..|- .+.
T Consensus 1 ~~~~ri~IV~s~~n~~i-~~~---ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~ 76 (144)
T PF00885_consen 1 MSGLRIAIVVSRFNEEI-TDR---LLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGE 76 (144)
T ss_dssp -TTEEEEEEEESTTHHH-HHH---HHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--S
T ss_pred CCCCEEEEEEEeccHHH-HHH---HHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCC
Confidence 56789999987654332 211 11223456777887 677777532 232210 01246999999982 222
Q ss_pred CCCCChhH--HHHHHHHHHHHhcCCcE-EEEe
Q 025645 74 AYGNDNWI--LKLCFMLQTLDAMQKKV-LGIC 102 (250)
Q Consensus 74 ~~~~~~~~--~~~~~~i~~~~~~~~Pi-lGIC 102 (250)
.+ ...++ .-...+++-.++.++|| +||.
T Consensus 77 T~-H~~~v~~~v~~gl~~lsl~~~~PV~~gvl 107 (144)
T PF00885_consen 77 TD-HFEYVANAVSRGLMDLSLEYGIPVIFGVL 107 (144)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred ch-HHHHHHHHHHHHHHHHhccCCccEEEEec
Confidence 11 11112 22345556667778884 4443
No 187
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.08 E-value=11 Score=31.87 Aligned_cols=72 Identities=10% Similarity=0.157 Sum_probs=42.1
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
||++|.. .+.... ....+...|.+.|..+.... ... ....++|.+|.-||-+. ++.
T Consensus 1 m~~~~~~-~~~~~~-------~~~~~~~~l~~~~~~~~~~~--~~~----~~~~~~d~vi~iGGDGT----------~L~ 56 (256)
T PRK14075 1 MKLGIFY-REEKEK-------EAKFLKEKISKEHEVVEFCE--ASA----SGKVTADLIIVVGGDGT----------VLK 56 (256)
T ss_pred CEEEEEe-CccHHH-------HHHHHHHHHHHcCCeeEeec--ccc----cccCCCCEEEEECCcHH----------HHH
Confidence 4677773 222222 23446778888886544221 111 12346899999999433 222
Q ss_pred HHHHHHhcCCcEEEEehHH
Q 025645 87 MLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~ 105 (250)
..+.+ ++||+||=.|.
T Consensus 57 a~~~~---~~Pilgin~G~ 72 (256)
T PRK14075 57 AAKKV---GTPLVGFKAGR 72 (256)
T ss_pred HHHHc---CCCEEEEeCCC
Confidence 33333 89999999986
No 188
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=79.95 E-value=4.3 Score=35.27 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=43.6
Q ss_pred HhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 23 KVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 23 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
..+.++.....+.|+++|+++.++. ..++..+ +..+|.||-.||-+.-.-. -.++.+..+||+||
T Consensus 71 Kvhkn~~~~~~~~l~k~giesklv~--R~~lsq~--i~waD~VisvGGDGTfL~A----------asrv~~~~~PViGv 135 (395)
T KOG4180|consen 71 KVHKNAIKFCQEELSKAGIESKLVS--RNDLSQP--IRWADMVISVGGDGTFLLA----------ASRVIDDSKPVIGV 135 (395)
T ss_pred HHHHHHHHHHHHHHhhCCcceeeee--hhhccCc--CchhhEEEEecCccceeeh----------hhhhhccCCceeee
Confidence 4455666777788999999988765 3333332 6678999988986543211 02255678999998
No 189
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=79.25 E-value=6 Score=33.88 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=36.4
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEc
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVIS 68 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~ 68 (250)
|+++||+|+..+...+.-.+.+ -...+.++|++.|+++..+......... ....++|.++..
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~--s~~~i~~al~~~g~~v~~i~~~~~~~~~-~~~~~~D~v~~~ 63 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLN--SGAAVLAALREAGYDAHPIDPGEDIAAQ-LKELGFDRVFNA 63 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHH--hHHHHHHHHHHCCCEEEEEecCcchHHH-hccCCCCEEEEe
Confidence 5567999987554333211111 2356788999999999887543221111 112368988876
No 190
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=79.00 E-value=4.3 Score=32.01 Aligned_cols=97 Identities=7% Similarity=-0.094 Sum_probs=52.2
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
|++|+..++.--. -..+.....++.+.|++.|.++..+.+..++... ...++.+|.||++||-+...+|
T Consensus 1 ~v~Ii~~GdEl~~-G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D----- 74 (170)
T cd00885 1 TAEIIAIGDELLS-GQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHDD----- 74 (170)
T ss_pred CEEEEEECccccC-CeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCC-----
Confidence 3566665532110 1112233456788999999988766555443211 0113568999999986543333
Q ss_pred HHHHHHHHHHhcCCcEEEEehHHHHHHHHc
Q 025645 83 KLCFMLQTLDAMQKKVLGICFGHQVLCRAL 112 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGIC~G~Qlla~a~ 112 (250)
-..+.++.+. ++|+.+.=--.+.|-..+
T Consensus 75 ~t~ea~~~~~--~~~l~~~~e~~~~i~~~~ 102 (170)
T cd00885 75 LTREAVAKAF--GRPLVLDEEALERIEARF 102 (170)
T ss_pred hHHHHHHHHh--CCCcccCHHHHHHHHHHH
Confidence 1223344432 566666555555555544
No 191
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=78.74 E-value=7.3 Score=35.69 Aligned_cols=56 Identities=14% Similarity=0.033 Sum_probs=35.8
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC---------CCC---------CCCCCCcCEEE
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD---------FPD---------FNDLHKYDGFV 66 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~---------~~~---------~~~l~~~dglI 66 (250)
..+||+|+..+..- ...+++|.+.|+++.+....... .+. ..++.++|.||
T Consensus 6 ~~~kv~V~GLG~sG-----------~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV 74 (448)
T COG0771 6 QGKKVLVLGLGKSG-----------LAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVV 74 (448)
T ss_pred cCCEEEEEeccccc-----------HHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEE
Confidence 36789999876532 23568999999888776533222 000 12355689999
Q ss_pred EcCCC
Q 025645 67 ISGSP 71 (250)
Q Consensus 67 i~Gg~ 71 (250)
++.|-
T Consensus 75 ~SPGi 79 (448)
T COG0771 75 KSPGI 79 (448)
T ss_pred ECCCC
Confidence 98773
No 192
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=78.65 E-value=9.4 Score=33.49 Aligned_cols=88 Identities=19% Similarity=0.097 Sum_probs=50.4
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC----CC--CCCCcCEEEEcCCCCCC
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD----FN--DLHKYDGFVISGSPYDA 74 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~----~~--~l~~~dglIi~Gg~~~~ 74 (250)
|+.....+|+++......+++... ..-+.+..++.|.++.+......+... .+ .-.++||||+.+. +.
T Consensus 18 ~~~~~~~~i~~v~k~~~~pf~~~~----~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~--d~ 91 (336)
T PRK15408 18 MTVQAAERIAFIPKLVGVGFFTSG----GNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAV--SP 91 (336)
T ss_pred ccccCCcEEEEEECCCCCHHHHHH----HHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC--CH
Confidence 344456799999877777765433 233456777889877642211111000 00 1257999999742 21
Q ss_pred CCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 75 YGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 75 ~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
..+...++++.+.++|++-+
T Consensus 92 -------~al~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 92 -------DGLCPALKRAMQRGVKVLTW 111 (336)
T ss_pred -------HHHHHHHHHHHHCCCeEEEe
Confidence 23345667777778877654
No 193
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=77.74 E-value=11 Score=32.28 Aligned_cols=42 Identities=2% Similarity=0.008 Sum_probs=26.6
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEe
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRV 48 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 48 (250)
.++||+||--+...+.-.... -.....++|++.|.++..+.+
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~--s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLK--SGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHH--HHHHHHHHHHHcCCEEEEEcC
Confidence 467999997655544322111 123467889999999877654
No 194
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=77.60 E-value=3 Score=31.32 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=37.1
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCC
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPY 72 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~ 72 (250)
|++|+..+..--. -..+.+...++..++++.|.++....+..++... ...++++|.||.+||-+
T Consensus 1 ~v~ii~~G~El~~-g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g 69 (133)
T cd00758 1 RVAIVTVSDELSQ-GQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG 69 (133)
T ss_pred CEEEEEeCccccC-CceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 5777776643210 1223344457788899999887665443332110 01134689999999854
No 195
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=77.45 E-value=4.4 Score=36.83 Aligned_cols=68 Identities=16% Similarity=0.048 Sum_probs=42.7
Q ss_pred ccceEEEEecCCCCh------hHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCC
Q 025645 5 EEKRYALFLAAKDSD------YVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPY 72 (250)
Q Consensus 5 ~~~riail~~~~~~~------~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~ 72 (250)
+++||+||.+++.-- .--+.|.+...++...|++.|.++..+.+..++... ...++++|.||++||.+
T Consensus 192 ~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S 270 (419)
T PRK14690 192 RPLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGAS 270 (419)
T ss_pred cCCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCcc
Confidence 356999998764311 012344555567888999999988766554433211 01245789999998843
No 196
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.90 E-value=16 Score=31.02 Aligned_cols=69 Identities=10% Similarity=-0.032 Sum_probs=42.4
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFM 87 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~ 87 (250)
+|+|+..... .. . .....+.++|++.|.++..- ..++|.+|.-||-+. ++..
T Consensus 4 ~i~iv~~~~~-~a-~----~~~~~l~~~l~~~g~~~~~~------------~~~~D~vi~lGGDGT----------~L~a 55 (264)
T PRK03501 4 NLFFFYKRDK-EL-V----EKVKPLKKIAEEYGFTVVDH------------PKNANIIVSIGGDGT----------FLQA 55 (264)
T ss_pred EEEEEECCCH-HH-H----HHHHHHHHHHHHCCCEEEcC------------CCCccEEEEECCcHH----------HHHH
Confidence 6777754333 22 1 12344677888888765421 135799999998432 3344
Q ss_pred HHHHHhc-CCcEEEEeh-H
Q 025645 88 LQTLDAM-QKKVLGICF-G 104 (250)
Q Consensus 88 i~~~~~~-~~PilGIC~-G 104 (250)
.+.+... ++|++||=. |
T Consensus 56 ~~~~~~~~~~pilgIn~~G 74 (264)
T PRK03501 56 VRKTGFREDCLYAGISTKD 74 (264)
T ss_pred HHHhcccCCCeEEeEecCC
Confidence 4544333 789999999 7
No 197
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.66 E-value=7.1 Score=33.34 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=38.4
Q ss_pred HHHHHhcCCCceEEEEeecCCC--C-----CCCCC-CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEeh
Q 025645 32 FVAAFGEEGERWDLFRVVEGDF--P-----DFNDL-HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICF 103 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~--~-----~~~~l-~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~ 103 (250)
+.++|++.|+++.+-....... + ...++ +++|.+|.-||-+ .++...+.+...++|||||=.
T Consensus 5 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG----------T~L~aa~~~~~~~~PilgIn~ 74 (272)
T PRK02231 5 LFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGGDG----------NMLGRARVLAKYDIPLIGINR 74 (272)
T ss_pred HHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECCcH----------HHHHHHHHhccCCCcEEEEeC
Confidence 4677888888776532111110 0 10122 3589999999843 234455655566899999998
Q ss_pred H
Q 025645 104 G 104 (250)
Q Consensus 104 G 104 (250)
|
T Consensus 75 G 75 (272)
T PRK02231 75 G 75 (272)
T ss_pred C
Confidence 8
No 198
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=75.53 E-value=7.6 Score=32.16 Aligned_cols=81 Identities=17% Similarity=0.001 Sum_probs=44.5
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC--C-----CCCCcCEEEEcCCCCCCCCCChh
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF--N-----DLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~-----~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
||||+..+...+++.. ...-+.+.+++.|..+.++......-+.. + .-.++||+|+.+....
T Consensus 1 ~Igvi~~~~~~~~~~~----~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~------- 69 (273)
T cd06310 1 KIALVPKGTTSDFWQA----VKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAK------- 69 (273)
T ss_pred CeEEEecCCCcHHHHH----HHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChh-------
Confidence 6899886655554332 23345677888898877664211111100 0 0146899999764211
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
...+.++.+...++|++.+
T Consensus 70 --~~~~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 70 --ALVPPLKEAKDAGIPVVLI 88 (273)
T ss_pred --hhHHHHHHHHHCCCCEEEe
Confidence 1123445555667787765
No 199
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=75.42 E-value=6.2 Score=33.34 Aligned_cols=81 Identities=11% Similarity=-0.042 Sum_probs=43.3
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-CC-----CCCCcCEEEEcCCCCCCCCCChhH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-FN-----DLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~-----~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
||+++..+...++... ....+.+.+++.|.++..+.....+... .. .-.++||||+.+....
T Consensus 1 ~i~~i~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~-------- 68 (294)
T cd06316 1 KAAIVMHTSGSDWSNA----QVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDPV-------- 68 (294)
T ss_pred CeEEEecCCCChHHHH----HHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCch--------
Confidence 6888886655544222 2344567788889887643221111100 00 1146899999753211
Q ss_pred HHHHHHHHHHHhcCCcEEEE
Q 025645 82 LKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGI 101 (250)
...+.++.+.+.++|++.+
T Consensus 69 -~~~~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 69 -STAAAYKKVAEAGIKLVFM 87 (294)
T ss_pred -hhhHHHHHHHHcCCcEEEe
Confidence 1123455666678887553
No 200
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=74.85 E-value=7.6 Score=32.19 Aligned_cols=81 Identities=11% Similarity=0.042 Sum_probs=42.7
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcC---CCceEEEEeecCCCCCC--C-----CCCCcCEEEEcCCCCCCCCC
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEE---GERWDLFRVVEGDFPDF--N-----DLHKYDGFVISGSPYDAYGN 77 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~~~~~~~~~~--~-----~l~~~dglIi~Gg~~~~~~~ 77 (250)
||+++..+...+++... ..-+.+.+++. |..+.++......-+.. . .-.++||||+.+....
T Consensus 1 ~Ig~i~~~~~~~~~~~~----~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~---- 72 (272)
T cd06300 1 KIGLSNSYAGNTWRAQM----LDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPT---- 72 (272)
T ss_pred CeEEeccccCChHHHHH----HHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh----
Confidence 68998866655543322 33455667777 87443332222110000 0 1147999999864211
Q ss_pred ChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 78 DNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 78 ~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
...+.++.+.+.++|++.+
T Consensus 73 -----~~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 73 -----ALNPVIEEACEAGIPVVSF 91 (272)
T ss_pred -----hhHHHHHHHHHCCCeEEEE
Confidence 1122345556678887765
No 201
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=74.82 E-value=12 Score=31.14 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=44.9
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC--C-----CCCCcCEEEEcCCCCCCCCCChh
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF--N-----DLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~-----~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
||+|+..+...+++.. ...-+.+.+++.|.++.+.......-+.. . .-.++||+|+.+...+.
T Consensus 1 ~igvi~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~------ 70 (275)
T cd06320 1 KYGVVLKTLSNEFWRS----LKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVN------ 70 (275)
T ss_pred CeeEEEecCCCHHHHH----HHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHH------
Confidence 5888886655554332 22345677888898877654321111110 0 01468999987542211
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
..+.++.+.+.++|++.+
T Consensus 71 ---~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 71 ---LVPAVERAKKKGIPVVNV 88 (275)
T ss_pred ---hHHHHHHHHHCCCeEEEE
Confidence 112345556678998766
No 202
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.62 E-value=23 Score=24.79 Aligned_cols=75 Identities=12% Similarity=-0.010 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCC----CCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe-hH
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFP----DFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC-FG 104 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~----~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC-~G 104 (250)
..|.+.+++.|.+........+..+ -+..+.+.|.||+.=+..+- ......-+.+.+.++|++=.= .|
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH-------~~~~~vk~~akk~~ip~~~~~~~~ 85 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSH-------NAMWKVKKAAKKYGIPIIYSRSRG 85 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcCh-------HHHHHHHHHHHHcCCcEEEECCCC
Confidence 4577889999998877700111111 12356788999998654332 122333355667789987554 45
Q ss_pred HHHHHHH
Q 025645 105 HQVLCRA 111 (250)
Q Consensus 105 ~Qlla~a 111 (250)
..-|..+
T Consensus 86 ~~~l~~~ 92 (97)
T PF10087_consen 86 VSSLERA 92 (97)
T ss_pred HHHHHHH
Confidence 5544443
No 203
>PRK06703 flavodoxin; Provisional
Probab=74.59 E-value=21 Score=27.06 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEc
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVIS 68 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~ 68 (250)
..+...++..|.++.+..+...+ ..++.++|.|||.
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~---~~~l~~~d~viig 55 (151)
T PRK06703 20 DLIKVSLDAFDHEVVLQEMDGMD---AEELLAYDGIILG 55 (151)
T ss_pred HHHHHHHHhcCCceEEEehhhCC---HHHHhcCCcEEEE
Confidence 34556677788888877654322 2357789998884
No 204
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=74.54 E-value=8.4 Score=31.91 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=44.0
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCC-----CCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFND-----LHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-----l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
|+|+..+.+.++.. .+..-+.+.+++.|..+.+.....+....... -.++||+|+.+...+. . ..
T Consensus 2 Igvi~~~~~~~~~~----~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~--~----~~ 71 (273)
T cd06292 2 VGLLVPELSNPIFP----AFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHAD--T----HA 71 (273)
T ss_pred EEEEeCCCcCchHH----HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCc--c----cc
Confidence 78887665555432 23344667788889887665432211000000 1468999997642211 1 11
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 025645 84 LCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGI 101 (250)
....++.+.+.++|++-+
T Consensus 72 ~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 72 DHSHYERLAERGLPVVLV 89 (273)
T ss_pred hhHHHHHHHhCCCCEEEE
Confidence 222345555668887665
No 205
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=73.86 E-value=3.4 Score=30.28 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=29.1
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC------CCCCCC-CCCcCEEEEcC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD------FPDFND-LHKYDGFVISG 69 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~------~~~~~~-l~~~dglIi~G 69 (250)
++|||+..+.+.. .+.....+.|.+.|.++..++...++ +++..+ -...|.+++.-
T Consensus 1 ksiAVvGaS~~~~-------~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~ 63 (116)
T PF13380_consen 1 KSIAVVGASDNPG-------KFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCV 63 (116)
T ss_dssp -EEEEET--SSTT-------SHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S
T ss_pred CEEEEEcccCCCC-------ChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEc
Confidence 4789998766543 45566677787788777666543322 222222 24566666654
No 206
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=73.82 E-value=6.1 Score=32.81 Aligned_cols=81 Identities=10% Similarity=-0.060 Sum_probs=43.7
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
+|+|+..+...+++.. ...-+.+.+++.|.++.++....+.... ...-.++||+|+.+...+.
T Consensus 1 ~i~vi~~~~~~~~~~~----~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~-------- 68 (277)
T cd06319 1 QIAYIVSDLRIPFWQI----MGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSA-------- 68 (277)
T ss_pred CeEEEeCCCCchHHHH----HHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhh--------
Confidence 5888886665555332 3344567778888887665322110000 0012579999987542111
Q ss_pred HHHHHHHHHHhcCCcEEEE
Q 025645 83 KLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGI 101 (250)
..+.++.+.+.++|++-+
T Consensus 69 -~~~~l~~~~~~~ipvV~~ 86 (277)
T cd06319 69 -AVTLLKLAAQAKIPVVIA 86 (277)
T ss_pred -hHHHHHHHHHCCCCEEEE
Confidence 122345555667887643
No 207
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=73.65 E-value=29 Score=26.05 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCceE-EEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcE--EEEe
Q 025645 31 VFVAAFGEEGERWD-LFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKV--LGIC 102 (250)
Q Consensus 31 ~~~~~l~~~g~~~~-~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pi--lGIC 102 (250)
.+.+.+...|.+++ ++++.... ....++.++|.||+..+.... ...+ .....+++.....++.+ +|.|
T Consensus 20 ~ia~~l~~~g~~v~~~~~~~~~~-~~~~~~~~~d~iilgs~t~~~-g~~p--~~~~~fl~~l~~~~k~~avfgtg 90 (140)
T TIGR01754 20 MIQDYLQKDGHEVDILHRIGTLA-DAPLDPENYDLVFLGTWTWER-GRTP--DEMKDFIAELGYKPSNVAIFGTG 90 (140)
T ss_pred HHHHHHhhCCeeEEecccccccc-cCcCChhhCCEEEEEcCeeCC-CcCC--HHHHHHHHHhcccCCEEEEEEcC
Confidence 35566777787765 23222101 112346678988777542211 1222 23445555544455554 5544
No 208
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=73.06 E-value=5 Score=33.23 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=43.8
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-C-----CCCCcCEEEEcCCCCCCCCCChhH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-N-----DLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~-----~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
+|+++......++... ...-+.+.+++.|.++.++... .+.... . .-.++||||+.++...
T Consensus 1 ~Ig~i~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~~~~vdgii~~~~~~~-------- 67 (273)
T cd06305 1 RIAVVRYGGSGDFDQA----YLAGTKAEAEALGGDLRVYDAG-GDDAKQADQIDQAIAQKVDAIIIQHGRAE-------- 67 (273)
T ss_pred CeEEEeecCCCcHHHH----HHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEecCChh--------
Confidence 5788876555554332 2234567788889887765321 111000 0 0137899999753211
Q ss_pred HHHHHHHHHHHhcCCcEEEE
Q 025645 82 LKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGI 101 (250)
...+.++.+.+.++|+..+
T Consensus 68 -~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 68 -VLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred -hhHHHHHHHHHcCCCEEEe
Confidence 1123455666678887655
No 209
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.98 E-value=5.9 Score=33.05 Aligned_cols=78 Identities=10% Similarity=-0.012 Sum_probs=41.1
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-CC-----CCCCcCEEEEcCCCCCCCCCChhH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-FN-----DLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~-----~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
+|+++..+...+++.. ....+.+.+++.|.++.+..... +... .. .-.++||||+.+...+
T Consensus 1 ~igv~~~~~~~~~~~~----~~~~i~~~~~~~g~~v~~~~~~~-~~~~~~~~i~~~~~~~~Dgiii~~~~~~-------- 67 (282)
T cd06318 1 KIGFSQYTLNSPFFAA----LTEAAKAHAKALGYELISTDAQG-DLTKQIADVEDLLTRGVNVLIINPVDPE-------- 67 (282)
T ss_pred CeeEEeccccCHHHHH----HHHHHHHHHHHcCCEEEEEcCCC-CHHHHHHHHHHHHHcCCCEEEEecCCcc--------
Confidence 5888876555554332 23445677888898876543211 1000 00 0146899999753211
Q ss_pred HHHHHHHHHHHhcCCcEE
Q 025645 82 LKLCFMLQTLDAMQKKVL 99 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~Pil 99 (250)
...+.++.+.+.++|++
T Consensus 68 -~~~~~i~~~~~~~iPvV 84 (282)
T cd06318 68 -GLVPAVAAAKAAGVPVV 84 (282)
T ss_pred -chHHHHHHHHHCCCCEE
Confidence 11233455556677754
No 210
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=72.38 E-value=5.6 Score=33.43 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=28.1
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
++++|.+|.-||-+ .++...+.+...++|||||=.|.
T Consensus 23 ~~~~Dlvi~iGGDG----------TlL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 23 IEEADVIVALGGDG----------FMLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cccCCEEEEECCCH----------HHHHHHHHhcCCCCeEEEEeCCC
Confidence 45689999999943 34455666666789999999886
No 211
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=72.17 E-value=4.7 Score=36.57 Aligned_cols=68 Identities=15% Similarity=0.074 Sum_probs=41.8
Q ss_pred ccceEEEEecCCCCh------hHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----CCCCCcCEEEEcCCCC
Q 025645 5 EEKRYALFLAAKDSD------YVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----NDLHKYDGFVISGSPY 72 (250)
Q Consensus 5 ~~~riail~~~~~~~------~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~l~~~dglIi~Gg~~ 72 (250)
++.||+||.+++.-- .--+.|.+..-++..+|++.|.++..+.+..++.... ..+.++|.||++||.+
T Consensus 176 ~~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S 254 (411)
T PRK10680 176 RKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_pred CCCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCC
Confidence 356899998764310 0122344445567889999999877665554432110 1135789999999854
No 212
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=71.81 E-value=9.9 Score=32.18 Aligned_cols=85 Identities=7% Similarity=0.064 Sum_probs=47.1
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCC
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGND 78 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~ 78 (250)
+++..|+++..+...++.. .....+.+.+++.|.++.+.....+...... .-.++||+|+.+...
T Consensus 24 ~~~~~I~vi~~~~~~~f~~----~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~------ 93 (295)
T PRK10653 24 MAKDTIALVVSTLNNPFFV----SLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDS------ 93 (295)
T ss_pred ccCCeEEEEecCCCChHHH----HHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCh------
Confidence 3566899988655555433 2334567788889988776543211100000 014689999975321
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEE
Q 025645 79 NWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 79 ~~~~~~~~~i~~~~~~~~PilGI 101 (250)
....+.++.+.+.++|++-+
T Consensus 94 ---~~~~~~l~~~~~~~ipvV~~ 113 (295)
T PRK10653 94 ---DAVGNAVKMANQANIPVITL 113 (295)
T ss_pred ---HHHHHHHHHHHHCCCCEEEE
Confidence 11123445555667887755
No 213
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=71.67 E-value=15 Score=30.22 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=50.2
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-------CCCCCCcCEEEEcCCCCCCCCCChhH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-------FNDLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-------~~~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
|+|+....+.++... +..-+.+.+++.|.++.++ .....-+. ...-.++||||+.....+.
T Consensus 1 I~vi~~~~~~~~~~~----~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~------- 68 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQ----VIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDS------- 68 (257)
T ss_dssp EEEEESSSSSHHHHH----HHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTT-------
T ss_pred cEEEeCCCCCHHHHH----HHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHH-------
Confidence 688888877775332 2344567788889888875 11111000 0012579999998653322
Q ss_pred HHHHHHHHHHHhcCCcEEEEehH
Q 025645 82 LKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGIC~G 104 (250)
....++.+.+.++|++.+=-+
T Consensus 69 --~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 69 --LAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp --THHHHHHHHHTTSEEEEESST
T ss_pred --HHHHHHHHhhcCceEEEEecc
Confidence 235667788889999886443
No 214
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=71.27 E-value=28 Score=27.94 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=33.2
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhc-CCCceEEEEeecCCCC------------------CCCCCCCcCEEEE
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE-EGERWDLFRVVEGDFP------------------DFNDLHKYDGFVI 67 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~------------------~~~~l~~~dglIi 67 (250)
+||+|+-.+.. .... ...+.+.+.+++ .|++++++.+... .| ..+++.++|+||+
T Consensus 2 ~kilIvy~S~~-G~T~----~lA~~ia~g~~~~~G~ev~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~ 75 (200)
T PRK03767 2 AKVLVLYYSMY-GHIE----TMAEAVAEGAREVAGAEVTIKRVPET-VPEEVAKKAGGKTDQAAPVATPDELADYDAIIF 75 (200)
T ss_pred CeEEEEEcCCC-CHHH----HHHHHHHHHHhhcCCcEEEEEecccc-CCHHHHHhcCCCcccCCCccCHHHHHhCCEEEE
Confidence 47888876543 1111 112334566666 8999988876421 11 1345678998877
Q ss_pred cC
Q 025645 68 SG 69 (250)
Q Consensus 68 ~G 69 (250)
.-
T Consensus 76 gs 77 (200)
T PRK03767 76 GT 77 (200)
T ss_pred Ee
Confidence 63
No 215
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=71.11 E-value=5.2 Score=36.28 Aligned_cols=66 Identities=6% Similarity=-0.024 Sum_probs=40.3
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPYD 73 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~~ 73 (250)
||++|+..++.-- .-+.+..-..++.+.|++.|.++....+..++... ...++.+|.||++||-+.
T Consensus 1 m~v~Ii~tGdEll-~G~i~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlgp 71 (413)
T TIGR00200 1 LKAEIISVGDELL-LGQIVNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLGP 71 (413)
T ss_pred CEEEEEEECcccc-CCcEEEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 5788887664311 11122233456788999999998766555443221 112457899999998553
No 216
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=70.64 E-value=3.2 Score=37.52 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=43.1
Q ss_pred ccceEEEEecCCCCh--h----HHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCC
Q 025645 5 EEKRYALFLAAKDSD--Y----VLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPY 72 (250)
Q Consensus 5 ~~~riail~~~~~~~--~----~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~ 72 (250)
++.||+|+.++...- . .-+.|.+-..++..++++.|.++...-+..++... ...++++|.||++||.+
T Consensus 175 rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~S 253 (404)
T COG0303 175 RKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGVS 253 (404)
T ss_pred cCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCcc
Confidence 457899998774411 1 12345555567889999999977666544433211 11245699999999854
No 217
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=70.58 E-value=27 Score=29.86 Aligned_cols=36 Identities=33% Similarity=0.389 Sum_probs=26.5
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
+.+|.+++.||-+. ++...+.....++||+||=.|+
T Consensus 54 ~~~d~ivvlGGDGt----------lL~~~~~~~~~~~pilgin~G~ 89 (281)
T COG0061 54 EKADLIVVLGGDGT----------LLRAARLLARLDIPVLGINLGH 89 (281)
T ss_pred cCceEEEEeCCcHH----------HHHHHHHhccCCCCEEEEeCCC
Confidence 56788888887433 3445566666789999999994
No 218
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=69.30 E-value=9.9 Score=32.29 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=38.7
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-CC-----CCCcCEEEEcCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-ND-----LHKYDGFVISGS 70 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~-----l~~~dglIi~Gg 70 (250)
+.|+|+..+...+++.. ...-+.+.+++.|..+.+.....+. +. .. -.++||+|+.+.
T Consensus 2 ~~IGvivp~~~npff~~----ii~gIe~~a~~~Gy~l~l~~t~~~~--~~e~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAE----IIRGIEQEAREHGYQLLLCNTGDDE--EKEEYIELLLQRRVDGIILASS 65 (279)
T ss_dssp CEEEEEESSSTSHHHHH----HHHHHHHHHHHTTCEEEEEEETTTH--HHHHHHHHHHHTTSSEEEEESS
T ss_pred CEEEEEECCCCCcHHHH----HHHHHHHHHHHcCCEEEEecCCCch--HHHHHHHHHHhcCCCEEEEecc
Confidence 57999998888776433 3445678888999988776543321 11 11 147899999954
No 219
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=69.21 E-value=0.88 Score=26.33 Aligned_cols=17 Identities=41% Similarity=0.837 Sum_probs=11.3
Q ss_pred cEEEEehHHHHHHHHcC
Q 025645 97 KVLGICFGHQVLCRALG 113 (250)
Q Consensus 97 PilGIC~G~Qlla~a~g 113 (250)
-..|-|+|.|++..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T PF09075_consen 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SS--TTTTTHHHHTTT-
T ss_pred Cccccccchhhhhhccc
Confidence 46789999999976543
No 220
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=68.81 E-value=7.3 Score=33.97 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=41.6
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCC-CcCEEEEcCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLH-KYDGFVISGSPY 72 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~-~~dglIi~Gg~~ 72 (250)
+++|++|+.++.... .-..++.....+...|++.|.++....+.+++... ...++ ++|.||++||.+
T Consensus 158 r~~rv~II~TG~Ev~-~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 158 RPLRVGLIVTGSEVY-GGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred CCCEEEEEEcCCcCC-CCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 467899999775321 11224455667888999999988766554433111 00123 389999999854
No 221
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=68.80 E-value=12 Score=31.36 Aligned_cols=52 Identities=13% Similarity=0.018 Sum_probs=37.6
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHH
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCR 110 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~ 110 (250)
+.+++||+++||-...+-..-...++.+.|++....+.-+-|...|.-++..
T Consensus 104 v~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAGAavM~~ 155 (293)
T COG4242 104 VENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAGAAVMSD 155 (293)
T ss_pred HHhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcCceecccccchhhcCC
Confidence 5689999999997643221111235667778878889999999999888764
No 222
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=68.79 E-value=17 Score=29.80 Aligned_cols=78 Identities=13% Similarity=0.038 Sum_probs=42.4
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
|+++..+...++... +...+.+.+++.|.++.+.....+...... .-.++||+|+.+...+ .
T Consensus 2 Ig~i~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--------~- 68 (268)
T cd01575 2 VAVLVPSLSNSVFAD----VLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHT--------E- 68 (268)
T ss_pred EEEEeCCCcchhHHH----HHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC--------H-
Confidence 678876655554332 234456778888988766543211100000 0247999999864321 1
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 025645 84 LCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGI 101 (250)
..++.+...++|++.+
T Consensus 69 --~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 69 --RTRQLLRAAGIPVVEI 84 (268)
T ss_pred --HHHHHHHhcCCCEEEE
Confidence 1233444567888765
No 223
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=68.71 E-value=12 Score=31.05 Aligned_cols=79 Identities=8% Similarity=0.132 Sum_probs=42.0
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCC---C--CCcCEEEEcCCCCCCCCCChhHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFND---L--HKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~---l--~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
|+|+..+...+++.. ....+.+.+++.|.++.+.....+....... + .++||+|+.++..+. .
T Consensus 2 Igvv~~~~~~~~~~~----~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~-------~- 69 (269)
T cd06281 2 IGCLVSDITNPLLAQ----LFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERD-------P- 69 (269)
T ss_pred EEEEecCCccccHHH----HHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCc-------H-
Confidence 788876655555332 2344567788889887655422111000000 1 478999998753211 1
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 025645 84 LCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGI 101 (250)
.+++.+.+.++|+.-+
T Consensus 70 --~~~~~~~~~~ipvV~i 85 (269)
T cd06281 70 --ELVDALASLDLPIVLL 85 (269)
T ss_pred --HHHHHHHhCCCCEEEE
Confidence 1233444567776555
No 224
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=68.71 E-value=11 Score=31.89 Aligned_cols=81 Identities=17% Similarity=0.094 Sum_probs=46.0
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
.|+|+..+...+++... ...+.+.+++.|.++.++....+...... .-.++||||+.+...+.
T Consensus 1 ~I~vi~~~~~~~~~~~~----~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~-------- 68 (288)
T cd01538 1 KIGLSLPTKTEERWIRD----RPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEA-------- 68 (288)
T ss_pred CeEEEEeCCCcHHHHHH----HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhh--------
Confidence 37888866555554322 34456778888988877653221100000 11479999998642221
Q ss_pred HHHHHHHHHHhcCCcEEEE
Q 025645 83 KLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGI 101 (250)
..+.++.+.+.++|+..+
T Consensus 69 -~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 69 -LASAVEKAADAGIPVIAY 86 (288)
T ss_pred -HHHHHHHHHHCCCCEEEE
Confidence 123455666678898766
No 225
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=68.62 E-value=8 Score=32.00 Aligned_cols=80 Identities=9% Similarity=0.110 Sum_probs=43.9
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhc-CCCceEEEEeecCCCCC-CCC-----CCCcCEEEEcCCCCCCCCCChh
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGE-EGERWDLFRVVEGDFPD-FND-----LHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~-~~~-----l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
||+|+..+...+++.. ...-+.+.+++ .|.++.+..... +... ... -.++||+|+.+...+
T Consensus 1 ~igvi~~~~~~~~~~~----~~~gi~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~~~~------- 68 (272)
T cd06301 1 KIGVSMANFDDNFLTL----LRNAMKEHAKVLGGVELQFEDAKN-DVATQLSQVENFIAQGVDAIIVVPVDTA------- 68 (272)
T ss_pred CeeEeecccCCHHHHH----HHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEecCchh-------
Confidence 5888886655655332 23345667777 787776653211 1000 000 136899999764221
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
...+.++.+.+.++|++.+
T Consensus 69 --~~~~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 69 --ATAPIVKAANAAGIPLVYV 87 (272)
T ss_pred --hhHHHHHHHHHCCCeEEEe
Confidence 1123456666778887754
No 226
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=68.00 E-value=15 Score=28.94 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=39.2
Q ss_pred cceEEEEecCCCChhHHHhh-CCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----CCCCC-cCEEEEcCCCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVY-GGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----NDLHK-YDGFVISGSPYD 73 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~l~~-~dglIi~Gg~~~ 73 (250)
+.+++|+..++..- ...+ +.-...+.++|+++|.++..+.+.+++.... +.+.+ +|.||.+||-+-
T Consensus 7 ~~~~~VvTVSd~r~--~~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~ 79 (169)
T COG0521 7 PLRIAVVTVSDRRS--TGEYEDKSGPLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGI 79 (169)
T ss_pred ceeEEEEEEecccc--cCCccccchhHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccC
Confidence 46799987443320 0111 2234567899999999986565555442210 00122 899999998764
No 227
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=67.98 E-value=58 Score=27.64 Aligned_cols=83 Identities=17% Similarity=0.071 Sum_probs=45.7
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhc--CCCceEEEEeecC--------C------CCCC-CCCCCcC
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE--EGERWDLFRVVEG--------D------FPDF-NDLHKYD 63 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~~~~~~~--------~------~~~~-~~l~~~d 63 (250)
|.+|.++||+|+.++.- ...+.+.|.+ .+.++..+.-... . +.+. +.+.+.|
T Consensus 1 ~~~m~~irIGIIG~G~I-----------G~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D 69 (271)
T PRK13302 1 MSSRPELRVAIAGLGAI-----------GKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHAD 69 (271)
T ss_pred CCCCCeeEEEEECccHH-----------HHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCC
Confidence 77888899999987642 2334445543 3444432211000 0 1111 1245689
Q ss_pred EEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 64 GFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 64 glIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
.|++.-+.. ...+++..+++.+++++-.+.|
T Consensus 70 ~Vvi~tp~~----------~h~e~~~~aL~aGk~Vi~~s~g 100 (271)
T PRK13302 70 IVVEAAPAS----------VLRAIVEPVLAAGKKAIVLSVG 100 (271)
T ss_pred EEEECCCcH----------HHHHHHHHHHHcCCcEEEecch
Confidence 999885432 1244556666778888766666
No 228
>PRK00549 competence damage-inducible protein A; Provisional
Probab=67.85 E-value=8 Score=35.12 Aligned_cols=67 Identities=9% Similarity=-0.024 Sum_probs=40.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPYDA 74 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~~~ 74 (250)
|+++||..+...- .-..+..-..++.+.|.+.|.++..+.+..++... ...++++|.||++||-+.-
T Consensus 1 m~~~ii~~G~Ell-~G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlGpt 72 (414)
T PRK00549 1 MKAEIIAVGTELL-LGQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLGPT 72 (414)
T ss_pred CEEEEEEeccccc-CCceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCCCC
Confidence 4678877654311 01122333457788999999988776655443211 0124578999999986543
No 229
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=67.78 E-value=9.4 Score=31.69 Aligned_cols=80 Identities=9% Similarity=-0.020 Sum_probs=43.4
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
|+++.....+++... ....+.+.+++.|.++.+.....+...... .-.++||+|+.+...+.
T Consensus 2 ~g~~~~~~~~~~~~~----~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~--------- 68 (273)
T cd06309 2 VGFSQVGAESPWRTA----ETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETG--------- 68 (273)
T ss_pred eeeccCCCCCHHHHH----HHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccc---------
Confidence 667665555554332 345567788888988877643221100000 01468999997643211
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 025645 84 LCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGI 101 (250)
....++.+.+.++|++.+
T Consensus 69 ~~~~i~~~~~~~iPvV~~ 86 (273)
T cd06309 69 WDPVLKEAKAAGIPVILV 86 (273)
T ss_pred chHHHHHHHHCCCCEEEE
Confidence 112345555667776554
No 230
>PRK03670 competence damage-inducible protein A; Provisional
Probab=67.39 E-value=7 Score=32.97 Aligned_cols=70 Identities=14% Similarity=0.057 Sum_probs=39.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCC-CcCEEEEcCCCCCCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLH-KYDGFVISGSPYDAYGN 77 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~-~~dglIi~Gg~~~~~~~ 77 (250)
|+.+||..++.--. -..+..-...+.+.|.+.|+++..+.+..++... ...+. .+|.||++||-+...+|
T Consensus 1 m~a~Ii~iGdEll~-G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt~dD 76 (252)
T PRK03670 1 MFAEIITVGDELLT-GNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGPTHDD 76 (252)
T ss_pred CEEEEEEeCCcCcC-CeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccCCCCC
Confidence 46677765543210 0111223346788899999998776655443211 00123 47999999986544343
No 231
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=66.52 E-value=9.6 Score=31.41 Aligned_cols=78 Identities=10% Similarity=0.050 Sum_probs=42.5
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
|+|+..+..+++... +...+.+.+++.|.++.+.....+...... .-.++||+|+.+...+. .
T Consensus 2 igvi~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~--------~ 69 (264)
T cd06274 2 IGLIIPDLENRSFAR----IAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSLPPD--------D 69 (264)
T ss_pred EEEEeccccCchHHH----HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCch--------H
Confidence 678876655554332 234456777888988877654221100000 12478999998753211 1
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 025645 84 LCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGI 101 (250)
.++.+.+.++|++-+
T Consensus 70 ---~~~~~~~~~ipvV~~ 84 (264)
T cd06274 70 ---PYYLCQKAGLPVVAL 84 (264)
T ss_pred ---HHHHHHhcCCCEEEe
Confidence 134455567776555
No 232
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=66.04 E-value=19 Score=30.80 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=34.8
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEc
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVIS 68 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~ 68 (250)
|||+||--+...+.-.... -...+.+.|++.|.++..+.....-......+.++|.++..
T Consensus 1 ~~v~v~~gg~s~e~~~sl~--s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~ 60 (299)
T PRK14571 1 MRVALLMGGVSREREISLR--SGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNV 60 (299)
T ss_pred CeEEEEeCCCCCCccchHH--HHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEe
Confidence 4799997665554322221 12456788999999988876432211111224567876655
No 233
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=66.00 E-value=5 Score=30.04 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=29.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCC
Q 025645 27 GYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPY 72 (250)
Q Consensus 27 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~ 72 (250)
.....+..+|++.|.++....+..++... ...++.+|.||.+||.+
T Consensus 18 ~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG 68 (135)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 33456788999999887655544432110 01124689999999865
No 234
>PRK03673 hypothetical protein; Provisional
Probab=65.95 E-value=7.3 Score=35.14 Aligned_cols=70 Identities=9% Similarity=0.032 Sum_probs=42.0
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCCCCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPYDAYGN 77 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~~~~~~ 77 (250)
+|++|+..++.-- .-+.+.+-..++.+.|.+.|+++....+..++... ...+..+|.||++||-+.-.+|
T Consensus 2 ~~v~Iis~GdEll-~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlGpt~dD 76 (396)
T PRK03673 2 LRVEMLSTGDEVL-HGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLGPTSDD 76 (396)
T ss_pred CEEEEEEecccCC-CCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCCCCCcc
Confidence 5788888764421 11222333456788999999998766554433111 1124578999999986543333
No 235
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=65.91 E-value=19 Score=29.61 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=42.4
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC----CC--CCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD----FN--DLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~----~~--~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
|+|+..+...++... +..-+.+.+++.|.++.+.....+.... .. .-.++||+|+.+.... .
T Consensus 2 I~vi~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~---~----- 69 (270)
T cd01545 2 IGLLYDNPSPGYVSE----IQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSD---N----- 69 (270)
T ss_pred EEEEEcCCCcccHHH----HHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCC---c-----
Confidence 677775555444322 2344567788889888776543221100 00 1246899999865311 1
Q ss_pred HHHHHHHHHHhcCCcEEEE
Q 025645 83 KLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGI 101 (250)
.+.++.+.+.++|++-+
T Consensus 70 --~~~~~~~~~~~ipvv~i 86 (270)
T cd01545 70 --PELLDLLDEAGVPYVRI 86 (270)
T ss_pred --cHHHHHHHhcCCCEEEE
Confidence 11234455567787654
No 236
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.73 E-value=7.7 Score=32.87 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=27.3
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHH
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQ 106 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q 106 (250)
+++|.+|.-||-+ .++..++.+...++|++||=.|+-
T Consensus 32 ~~~D~vi~iGGDG----------T~L~a~~~~~~~~iPilGIN~G~l 68 (259)
T PRK00561 32 DGADYLFVLGGDG----------FFVSTAANYNCAGCKVVGINTGHL 68 (259)
T ss_pred CCCCEEEEECCcH----------HHHHHHHHhcCCCCcEEEEecCCC
Confidence 4589999999943 234455666667899999998853
No 237
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=65.62 E-value=16 Score=33.65 Aligned_cols=87 Identities=8% Similarity=0.044 Sum_probs=46.5
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
..|+.|++..+..+ ...+.+.|...|+++.++.+..-.+. +...+-|++.+...-......-..+-.
T Consensus 385 ~frVvVVDSRP~~E---------G~~~lr~Lv~~GinctYv~I~a~syi----m~evtkvfLGahailsNG~vysR~GTa 451 (556)
T KOG1467|consen 385 KFRVVVVDSRPNLE---------GRKLLRRLVDRGINCTYVLINAASYI----MLEVTKVFLGAHAILSNGAVYSRVGTA 451 (556)
T ss_pred ceEEEEEeCCCCcc---------hHHHHHHHHHcCCCeEEEEehhHHHH----HHhcceeeechhhhhcCcchhhhcchH
Confidence 34666665544432 23456788899999998876543332 233455555543321111110011222
Q ss_pred HHHHHHHhcCCcEEEEehHH
Q 025645 86 FMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~ 105 (250)
.+.--+.+.++|||-.|=-+
T Consensus 452 ~valvAna~nVPVlVCCE~y 471 (556)
T KOG1467|consen 452 CVALVANAFNVPVLVCCEAY 471 (556)
T ss_pred HHHHHhcccCCCEEEEechh
Confidence 22233456799999999554
No 238
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=65.24 E-value=10 Score=32.99 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=48.4
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC---C--CCCcCEEEEcCCCCCCCCCChh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN---D--LHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~---~--l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
+.+|+++..+..++++... ...+.+.+++.|.++.+.....+...... . -.++||||+.+...+
T Consensus 25 ~~~Ig~i~~~~~~~f~~~~----~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~------- 93 (330)
T PRK10355 25 EVKIGMAIDDLRLERWQKD----RDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQ------- 93 (330)
T ss_pred CceEEEEecCCCchHHHHH----HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh-------
Confidence 4689999987777654332 34456778888988776643211100000 0 147999999864211
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
...+.++.+.+.++|++-+
T Consensus 94 --~~~~~l~~~~~~~iPvV~i 112 (330)
T PRK10355 94 --VLSNVIKEAKQEGIKVLAY 112 (330)
T ss_pred --hHHHHHHHHHHCCCeEEEE
Confidence 1123445666677887766
No 239
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=65.03 E-value=15 Score=30.03 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=43.9
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC---C--CCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN---D--LHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~---~--l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
|+|+..+...++... ....+.+.+++.|..+.+.....+...... . -.++||+|+.++.... .
T Consensus 2 igvv~~~~~~~~~~~----~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~-------~- 69 (266)
T cd06282 2 VGVVLPSLANPVFAE----CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAAT-------S- 69 (266)
T ss_pred eEEEeCCCCcchHHH----HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCc-------h-
Confidence 677775555554332 233456777888988877653211100000 0 1468999997542111 1
Q ss_pred HHHHHHHHHhcCCcEEEEe
Q 025645 84 LCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC 102 (250)
+.++.+.+.++|++.+.
T Consensus 70 --~~~~~~~~~~ipvV~~~ 86 (266)
T cd06282 70 --PALDLLDAERVPYVLAY 86 (266)
T ss_pred --HHHHHHhhCCCCEEEEe
Confidence 13455566789987664
No 240
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=64.71 E-value=12 Score=30.88 Aligned_cols=82 Identities=5% Similarity=-0.088 Sum_probs=41.8
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcC-CCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChhH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEE-GERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
+|+++..+...++.. .+..-+.+.+.+. |.++.+.....+.....+ .-.++||||+.+...+..
T Consensus 1 ~ig~~~~~~~~~~~~----~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~------ 70 (270)
T cd06308 1 VIGFSQCNLADPWRA----AMNDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAAPL------ 70 (270)
T ss_pred CEEEEeeCCCCHHHH----HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchhhc------
Confidence 477777554444322 2233455666765 777765532211100000 014689999986432211
Q ss_pred HHHHHHHHHHHhcCCcEEEEe
Q 025645 82 LKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGIC 102 (250)
.+.++.+.+.++|+.-+.
T Consensus 71 ---~~~~~~~~~~~ipvV~~~ 88 (270)
T cd06308 71 ---TPVVEEAYRAGIPVILLD 88 (270)
T ss_pred ---hHHHHHHHHCCCCEEEeC
Confidence 123455556788887664
No 241
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=64.66 E-value=15 Score=31.25 Aligned_cols=80 Identities=15% Similarity=0.001 Sum_probs=41.9
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-C---C--CCCcCEEEEcCCCCCCCCCChhH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-N---D--LHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~---~--l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
+|+++......++... ...-+.+.+++.|.++.++.....+.... . . -.++||||+.+...
T Consensus 1 ~I~vi~~~~~~~f~~~----i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~--------- 67 (298)
T cd06302 1 TIAFVPKVTGIPYFNR----MEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPNDP--------- 67 (298)
T ss_pred CEEEEEcCCCChHHHH----HHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCCH---------
Confidence 4788876555554332 23445667778888776542111111000 0 0 14689999975321
Q ss_pred HHHHHHHHHHHhcCCcEEE
Q 025645 82 LKLCFMLQTLDAMQKKVLG 100 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilG 100 (250)
......++.+.+.++|+.-
T Consensus 68 ~~~~~~~~~~~~~~iPvV~ 86 (298)
T cd06302 68 DALEPVLKKAREAGIKVVT 86 (298)
T ss_pred HHHHHHHHHHHHCCCeEEE
Confidence 1123344555566777654
No 242
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=64.57 E-value=44 Score=25.55 Aligned_cols=77 Identities=18% Similarity=0.135 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeecC-CCC--------CCCCCCCcCEEEEcCCCCCCCCC---ChhHHHHHHHHHHHHh
Q 025645 26 GGYFNVFVAAFGEEGERWDLFRVVEG-DFP--------DFNDLHKYDGFVISGSPYDAYGN---DNWILKLCFMLQTLDA 93 (250)
Q Consensus 26 ~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~--------~~~~l~~~dglIi~Gg~~~~~~~---~~~~~~~~~~i~~~~~ 93 (250)
.+|...+.+.|.+.+..+.++...-+ ... ....-.++|.|+|..|..+.... ..+...+.++++.+.+
T Consensus 20 ~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~ 99 (177)
T cd01822 20 EGWPALLQKRLDARGIDVTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQA 99 (177)
T ss_pred CchHHHHHHHHHHhCCCeEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHH
Confidence 45777778888766666666554322 110 00011368999999776654322 2345566777777766
Q ss_pred cCCcEEEEe
Q 025645 94 MQKKVLGIC 102 (250)
Q Consensus 94 ~~~PilGIC 102 (250)
.+.+++=++
T Consensus 100 ~~~~vil~~ 108 (177)
T cd01822 100 RGAPVLLVG 108 (177)
T ss_pred CCCeEEEEe
Confidence 565555443
No 243
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=64.50 E-value=14 Score=30.61 Aligned_cols=82 Identities=11% Similarity=0.030 Sum_probs=43.4
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-C-----CCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-N-----DLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~-----~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
|+|+..+...+++... ..-+.+.+++.|..+.+..... +.... . .-.++||+|+.++..+..+..
T Consensus 2 igvv~~~~~~~~~~~~----~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~---- 72 (273)
T cd01541 2 IGVITTYISDYIFPSI----IRGIESVLSEKGYSLLLASTNN-DPERERKCLENMLSQGIDGLIIEPTKSALPNPN---- 72 (273)
T ss_pred eEEEeCCccchhHHHH----HHHHHHHHHHcCCEEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEecccccccccc----
Confidence 6777766556554432 3445677888898886654321 11000 0 014789999976533221111
Q ss_pred HHHHHHHHHHhcCCcEEEE
Q 025645 83 KLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGI 101 (250)
...++.+.+.++|+.-+
T Consensus 73 --~~~~~~~~~~~ipvV~~ 89 (273)
T cd01541 73 --IDLYLKLEKLGIPYVFI 89 (273)
T ss_pred --HHHHHHHHHCCCCEEEE
Confidence 12334455567776644
No 244
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=64.32 E-value=37 Score=27.18 Aligned_cols=40 Identities=5% Similarity=-0.105 Sum_probs=23.0
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEee
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVV 49 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 49 (250)
|||.+|..++........ ..+.+.+.+.+.|.+++.+.+.
T Consensus 1 mkIl~I~GSpr~~S~t~~---l~~~~~~~l~~~g~ev~~idL~ 40 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSA---LLEYAREWLNGLGVEVYHWNLQ 40 (191)
T ss_pred CEEEEEEcCCCCCChHHH---HHHHHHHHHHhCCCEEEEEEcc
Confidence 478888766543211100 1233456677788888877654
No 245
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=63.09 E-value=14 Score=30.43 Aligned_cols=78 Identities=13% Similarity=0.023 Sum_probs=41.4
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
|+|+..+...++... +..-+.+.+++.|..+..+....+.... .-.-.++||||+.+...+.
T Consensus 2 igvv~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--------- 68 (265)
T cd06299 2 IGVIVPDIRNPYFAS----LATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQSA--------- 68 (265)
T ss_pred EEEEecCCCCccHHH----HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCh---------
Confidence 677775544444332 2334567778889887766432111000 0001468999998753211
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 025645 84 LCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGI 101 (250)
..++.+.+.++|+.-+
T Consensus 69 --~~~~~l~~~~ipvV~~ 84 (265)
T cd06299 69 --EQLEDLLKRGIPVVFV 84 (265)
T ss_pred --HHHHHHHhCCCCEEEE
Confidence 1245555667776433
No 246
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=62.98 E-value=39 Score=25.64 Aligned_cols=51 Identities=18% Similarity=0.035 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhc
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAM 94 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~ 94 (250)
..+.+.|.+.|+.++++. ...++.+|+.||+|.-.... ....+.++...+.
T Consensus 29 ~~~~~~l~~~gi~~d~v~-------~~~~l~~y~~vi~P~~~~~~-------~~~~~~l~~~v~~ 79 (154)
T cd03143 29 LALYRALRELGIPVDVVP-------PDADLSGYKLVVLPDLYLLS-------DATAAALRAYVEN 79 (154)
T ss_pred HHHHHHHHHCCCCEEEEC-------CCCCcccCCEEEECchhcCC-------HHHHHHHHHHHHC
Confidence 345678889999998885 22357789999999764322 2445555665554
No 247
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=62.23 E-value=5.9 Score=35.68 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=42.4
Q ss_pred ccceEEEEecCCCCh------hHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCC
Q 025645 5 EEKRYALFLAAKDSD------YVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPY 72 (250)
Q Consensus 5 ~~~riail~~~~~~~------~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~ 72 (250)
.+.||+|+.++..-- .--..|.+...++..+|++.|.++..+.+..++... ...++.+|.||.+||.+
T Consensus 167 ~~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s 245 (394)
T cd00887 167 RRPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVS 245 (394)
T ss_pred cCCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 356899998764311 012234455567888999999988766554433211 01234689999999854
No 248
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=61.02 E-value=57 Score=27.23 Aligned_cols=77 Identities=16% Similarity=0.078 Sum_probs=43.7
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-------CCC--------CCCCCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-------FPD--------FNDLHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-------~~~--------~~~l~~~dglIi~Gg 70 (250)
.+||+|+.. +.. +..+.+.++|++.|+++.-+.-..-. .+. ..+..+.|+|++++.
T Consensus 120 ~~RIalvTP-Y~~--------~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCT 190 (239)
T TIGR02990 120 VRRISLLTP-YTP--------ETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCT 190 (239)
T ss_pred CCEEEEECC-CcH--------HHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 578999953 222 13355788999999988665321110 000 011346899999976
Q ss_pred CCCCCCCChhHHHHHHHHHHHH-hcCCcEEEE
Q 025645 71 PYDAYGNDNWILKLCFMLQTLD-AMQKKVLGI 101 (250)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~-~~~~PilGI 101 (250)
..... +++..+. +.|+||+-.
T Consensus 191 nLrt~----------~vi~~lE~~lGkPVlsS 212 (239)
T TIGR02990 191 ALRAA----------TCAQRIEQAIGKPVVTS 212 (239)
T ss_pred CchhH----------HHHHHHHHHHCCCEEEH
Confidence 54332 2333332 248999865
No 249
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.62 E-value=12 Score=31.32 Aligned_cols=83 Identities=17% Similarity=0.066 Sum_probs=43.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChhH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
++|+++..+...+++. .+..-+.+.+++.|..+.+.....+...... .-.++||+|+.+...+.
T Consensus 1 ~~ig~i~~~~~~~~~~----~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~------- 69 (280)
T cd06315 1 KNIIFVASDLKNGGIL----GVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAE------- 69 (280)
T ss_pred CeEEEEecccCCcHHH----HHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHH-------
Confidence 4688888665554422 2233455677888887665432211000000 12578999998642111
Q ss_pred HHHHHHHHHHHhcCCcEEEEe
Q 025645 82 LKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGIC 102 (250)
....++.+.+.++|+.-+.
T Consensus 70 --~~~~~~~~~~~~iPvV~~d 88 (280)
T cd06315 70 --LQAELELAQKAGIPVVGWH 88 (280)
T ss_pred --HHHHHHHHHHCCCCEEEec
Confidence 1122344445678877663
No 250
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=60.59 E-value=25 Score=29.16 Aligned_cols=55 Identities=24% Similarity=0.178 Sum_probs=31.8
Q ss_pred eEEEEecCC-----CChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcC
Q 025645 8 RYALFLAAK-----DSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISG 69 (250)
Q Consensus 8 riail~~~~-----~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~G 69 (250)
|||++.... .++++. .+..-+.+.+++.|..+.+..... . ......++||+|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~----~~~~gi~~~~~~~g~~~~~~~~~~-~--~~~~~~~vdgii~~~ 60 (270)
T cd01544 1 RIAIVQWYSEEEELDDPYYL----SIRLGIEKRAQELGIELTKFFRDD-D--LLEILEDVDGIIAIG 60 (270)
T ss_pred CeEEEEeccccccccCccHH----HHHHHHHHHHHHcCCEEEEEeccc-h--hHHhccCcCEEEEec
Confidence 688888622 122221 223345677888898887765321 1 112346799999975
No 251
>PRK05569 flavodoxin; Provisional
Probab=60.44 E-value=67 Score=23.82 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=23.1
Q ss_pred HHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcC
Q 025645 31 VFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISG 69 (250)
Q Consensus 31 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~G 69 (250)
.+++-+++.|.+++++.+...+ ..++.++|+||+.-
T Consensus 21 ~i~~~~~~~g~~v~~~~~~~~~---~~~~~~~d~iilgs 56 (141)
T PRK05569 21 TIADGAKEAGAEVTIKHVADAK---VEDVLEADAVAFGS 56 (141)
T ss_pred HHHHHHHhCCCeEEEEECCcCC---HHHHhhCCEEEEEC
Confidence 3455566678887777654322 23567899988864
No 252
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=60.34 E-value=15 Score=30.04 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=31.5
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC--C-----CCCCcCEEEEcCC
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF--N-----DLHKYDGFVISGS 70 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~-----~l~~~dglIi~Gg 70 (250)
|+|+..+...++.. ....-+.+.+++.|..+.+.....+ ++. . .-.++||+|+.+.
T Consensus 2 igvv~~~~~~~~~~----~~~~gi~~~~~~~g~~~~~~~~~~~--~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 2 IGVIVPRLDSFSTS----RTVKGILAALYENGYQMLLMNTNFS--IEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred eEEEecCCccchHH----HHHHHHHHHHHHCCCEEEEEeCCCC--HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 67776555444422 2334456777888988766543211 110 0 0257899999864
No 253
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=60.05 E-value=14 Score=30.15 Aligned_cols=59 Identities=15% Similarity=0.040 Sum_probs=31.7
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCC
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGS 70 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg 70 (250)
||+++..+...++... ...-+.+.+++.|.++.+.....+.... .-.-.++||||+.+.
T Consensus 1 ~ig~i~p~~~~~~~~~----~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (267)
T cd01536 1 KIGLVVPSLNNPFWQA----MNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPV 64 (267)
T ss_pred CEEEEeccccCHHHHH----HHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5788876544443222 2233456677788887766533211000 001137899999764
No 254
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=60.04 E-value=34 Score=27.50 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=24.1
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
..+|.||+.... .....++++...++|+.|+|
T Consensus 126 ~~Pdlviv~~~~-----------~~~~ai~Ea~~l~IP~I~i~ 157 (193)
T cd01425 126 RLPDLVIVLDPR-----------KEHQAIREASKLGIPVIAIV 157 (193)
T ss_pred cCCCEEEEeCCc-----------cchHHHHHHHHcCCCEEEEe
Confidence 457899998632 12346788888999999998
No 255
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=59.95 E-value=47 Score=32.03 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=55.3
Q ss_pred eEEEEecCCCC-----------hhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCC
Q 025645 8 RYALFLAAKDS-----------DYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYG 76 (250)
Q Consensus 8 riail~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~ 76 (250)
|||||++=-.. -..+++| +|.+.+ ..|. |..+++-.+.-++.-....++++|-||=.|....+..
T Consensus 440 kvavLn~WG~~RsW~~~~v~ha~~ykq~y-sy~Gvl-E~LS--G~p~dV~FisFdDi~~~gi~~didViIN~G~a~ta~S 515 (719)
T TIGR02336 440 KVAVLNSWGKMRSWMAFQVAHALPYKQTY-SYYGIL-ECLS--GMPVEVEFISFDDILEHGIDSDIDVIINGGDADTAWS 515 (719)
T ss_pred eEEEEecccccchHhhhhhhhhhhhhhhh-hHHHHH-HHhc--CCCeeEEEecHHHHhhcCCCcCCcEEEecCccccccc
Confidence 89999842221 1123444 244432 3443 5555443332223222245678999998888777765
Q ss_pred CC-hhH-HHHHHHHHHHHhcCCcEEEEehH
Q 025645 77 ND-NWI-LKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 77 ~~-~~~-~~~~~~i~~~~~~~~PilGIC~G 104 (250)
.. .|. +.+.+.|++..+.|--++||+=-
T Consensus 516 GG~~W~d~~~~~aLr~fV~~GGglIGVgDp 545 (719)
T TIGR02336 516 GGDVWTNPKLVETVRAWVRGGGGFVGVGEP 545 (719)
T ss_pred CccccCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 54 443 46678889888889888898854
No 256
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=59.80 E-value=19 Score=29.59 Aligned_cols=58 Identities=9% Similarity=0.029 Sum_probs=32.4
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCC
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGS 70 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg 70 (250)
|+++..+...++... +...+.+.+++.|..+.+.....+...... .-.++||+|+.+.
T Consensus 2 i~vi~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 2 VGVIIPDITNSYFAE----LARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred EEEEECCCcchHHHH----HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 678776655554332 234456678888988776643211100000 1147899999864
No 257
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.74 E-value=17 Score=29.91 Aligned_cols=80 Identities=9% Similarity=0.020 Sum_probs=42.0
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
|+|+..+...++... ....+.+.+++.|.++.+.....+...... .-.++||+|+.+.... .
T Consensus 2 i~~~~~~~~~~~~~~----~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~---------~ 68 (267)
T cd06322 2 IGASLLTQQHPFYIE----LANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSK---------G 68 (267)
T ss_pred eeEeecCcccHHHHH----HHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChh---------h
Confidence 677765544544332 234456778888988766543211100000 0247999999753111 1
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 025645 84 LCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGI 101 (250)
..+.++.+.+.++|++.+
T Consensus 69 ~~~~~~~~~~~~ipvV~~ 86 (267)
T cd06322 69 IRAAIAKAKKAGIPVITV 86 (267)
T ss_pred hHHHHHHHHHCCCCEEEE
Confidence 122345555667887665
No 258
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=59.72 E-value=15 Score=30.28 Aligned_cols=78 Identities=10% Similarity=0.063 Sum_probs=41.6
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
|+|+..+...++... +...+.+.+++.|..+.+.....+...... .-.++||+|+.|...+ .
T Consensus 2 i~vv~p~~~~~~~~~----~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--------~- 68 (268)
T cd06273 2 IGAIVPTLDNAIFAR----VIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDHS--------P- 68 (268)
T ss_pred eEEEeCCCCCchHHH----HHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC--------H-
Confidence 778876544444322 233456778888988766432111000000 0136899999864321 1
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 025645 84 LCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGI 101 (250)
..++.+.+.++|++.+
T Consensus 69 --~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 69 --ALLDLLARRGVPYVAT 84 (268)
T ss_pred --HHHHHHHhCCCCEEEE
Confidence 2234455678888765
No 259
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=59.68 E-value=73 Score=24.79 Aligned_cols=97 Identities=11% Similarity=0.017 Sum_probs=51.4
Q ss_pred cceEEEEecCCCChhHHH-hhCCHHHHHHHHHhcCC-CceEEEEeecCCCCC--------CCCCCCcCEEEEcCCCCCCC
Q 025645 6 EKRYALFLAAKDSDYVLK-VYGGYFNVFVAAFGEEG-ERWDLFRVVEGDFPD--------FNDLHKYDGFVISGSPYDAY 75 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~-~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~--------~~~l~~~dglIi~Gg~~~~~ 75 (250)
++||+++.++.....-.. .-..|.+.+.+.|.+.. ..+.+....-+.... ......+|.|+|..|..+..
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~~~~~~pd~Vii~~G~ND~~ 81 (191)
T cd01836 2 PLRLLVLGDSTAAGVGVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAPLPETRFDVAVISIGVNDVT 81 (191)
T ss_pred CeEEEEEeccccccccccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHhcccCCCCEEEEEecccCcC
Confidence 467888765543332111 11246677777776542 234444332221110 01124689999997766653
Q ss_pred CC---ChhHHHHHHHHHHHHh--cCCcEEEEe
Q 025645 76 GN---DNWILKLCFMLQTLDA--MQKKVLGIC 102 (250)
Q Consensus 76 ~~---~~~~~~~~~~i~~~~~--~~~PilGIC 102 (250)
.. ..+...+.++++.+.+ .+.+|+-++
T Consensus 82 ~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~ 113 (191)
T cd01836 82 HLTSIARWRKQLAELVDALRAKFPGARVVVTA 113 (191)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 32 2445667777777766 456666554
No 260
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=59.68 E-value=66 Score=25.79 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=30.9
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcC-CCceEEEEeecCCC---------------C--CCCCCCCcCEEEEcC
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEE-GERWDLFRVVEGDF---------------P--DFNDLHKYDGFVISG 69 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~---------------~--~~~~l~~~dglIi~G 69 (250)
||+|+-.+.. .+... ..+.+.+-+++. |.+++++++..... | +..++.++|+||+.-
T Consensus 2 kilIiY~S~~-G~T~~----lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GS 76 (197)
T TIGR01755 2 KVLVLYYSMY-GHIET----MARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGT 76 (197)
T ss_pred eEEEEEeCCC-CHHHH----HHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEe
Confidence 6788765432 11111 112344556554 88888877643210 0 124567899988764
Q ss_pred C
Q 025645 70 S 70 (250)
Q Consensus 70 g 70 (250)
.
T Consensus 77 P 77 (197)
T TIGR01755 77 P 77 (197)
T ss_pred c
Confidence 3
No 261
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.23 E-value=20 Score=29.66 Aligned_cols=82 Identities=17% Similarity=0.036 Sum_probs=45.4
Q ss_pred eEEEEecCC-CChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-C-----CCCCcCEEEEcCCCCCCCCCChh
Q 025645 8 RYALFLAAK-DSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-N-----DLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 8 riail~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~-----~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
||+++..+. ..+++.. ....+.+.+++.|.++.+......+.... . .-.++||+|+.+...+
T Consensus 1 ~i~~i~~~~~~~~~~~~----~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~------- 69 (271)
T cd06312 1 KIAFVTHGPAGDPFWTV----VKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPD------- 69 (271)
T ss_pred CEEEecCCCCCCcHHHH----HHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChH-------
Confidence 578887655 4444332 23445677778888877654322011000 0 0146899999864211
Q ss_pred HHHHHHHHHHHHhcCCcEEEEe
Q 025645 81 ILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGIC 102 (250)
...+.++.+.+.++|++-+.
T Consensus 70 --~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 70 --ALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred --HhHHHHHHHHHCCCeEEEeC
Confidence 12234566666788887774
No 262
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=58.84 E-value=57 Score=25.40 Aligned_cols=57 Identities=23% Similarity=0.058 Sum_probs=36.3
Q ss_pred CEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH--------HHHHHHHcCceEEecC
Q 025645 63 DGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG--------HQVLCRALGGKVGKAY 120 (250)
Q Consensus 63 dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G--------~Qlla~a~gg~v~~~~ 120 (250)
-.|+|+-|..+... .+......++.+.+.+.++++..|+.| ++-||.+.||+....+
T Consensus 101 ~ivliTDG~~~~g~-~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~ 165 (178)
T cd01451 101 LIVVITDGRANVGP-DPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLP 165 (178)
T ss_pred EEEEECCCCCCCCC-CchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcC
Confidence 45666766444321 121112255667777889999999987 4667888888876554
No 263
>PRK07308 flavodoxin; Validated
Probab=58.52 E-value=55 Score=24.61 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCC
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSP 71 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~ 71 (250)
..+.+.+++.|..+++..+...+ ..++.++|+||+ |.|
T Consensus 20 ~~ia~~l~~~g~~~~~~~~~~~~---~~~l~~~d~vi~-g~~ 57 (146)
T PRK07308 20 DIVADKLRELGHDVDVDECTTVD---ASDFEDADIAIV-ATY 57 (146)
T ss_pred HHHHHHHHhCCCceEEEecccCC---HhHhccCCEEEE-EeC
Confidence 34556677788887776543322 234678899998 544
No 264
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=58.37 E-value=14 Score=30.59 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=42.8
Q ss_pred ceEEEEecC-------CCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-CCC--CCcCEEEEcCCCCCCCC
Q 025645 7 KRYALFLAA-------KDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-NDL--HKYDGFVISGSPYDAYG 76 (250)
Q Consensus 7 ~riail~~~-------~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~l--~~~dglIi~Gg~~~~~~ 76 (250)
..|+|+... .+.++.. .+..-+.+.+++.|.++.++.....+.... +.+ .++||||+.+...+
T Consensus 4 ~~i~vi~p~~~~~~~~~~~~~~~----~~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~--- 76 (275)
T cd06295 4 DTIALVVPEPHERDQSFSDPFFL----SLLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHDQ--- 76 (275)
T ss_pred eEEEEEecCccccccccCCchHH----HHHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCC---
Confidence 468998853 2333222 122335677888898887765332210000 011 47999999864321
Q ss_pred CChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 77 NDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 77 ~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
. ..++.+.+.++|+..+
T Consensus 77 -----~---~~~~~~~~~~ipvV~~ 93 (275)
T cd06295 77 -----D---PLPERLAETGLPFVVW 93 (275)
T ss_pred -----h---HHHHHHHhCCCCEEEE
Confidence 1 1245566678887643
No 265
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=57.90 E-value=15 Score=31.24 Aligned_cols=81 Identities=7% Similarity=0.007 Sum_probs=42.3
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhc--CCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChh
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGE--EGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
||+|+......++... ...-+.+.+++ .|.++.+.....+...... .-.++||+|+.+...
T Consensus 1 ~Igviv~~~~~~~~~~----~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~-------- 68 (303)
T cd01539 1 KIGVFLYKFDDTFISL----VRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDP-------- 68 (303)
T ss_pred CeEEEeeCCCChHHHH----HHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCch--------
Confidence 6888876555544322 22335566776 5666554432111000000 124789999975321
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
......++.+.+.++|+.-+
T Consensus 69 -~~~~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 69 -TAAQTVINKAKQKNIPVIFF 88 (303)
T ss_pred -hhHHHHHHHHHHCCCCEEEe
Confidence 11234556666778998754
No 266
>PRK06455 riboflavin synthase; Provisional
Probab=57.68 E-value=88 Score=24.30 Aligned_cols=87 Identities=9% Similarity=0.034 Sum_probs=43.8
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhc--CCCceEEEEeec-CCCCCC----CCCCCcCEEEEcCCCCCCCCCCh
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE--EGERWDLFRVVE-GDFPDF----NDLHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~~~~~~-~~~~~~----~~l~~~dglIi~Gg~~~~~~~~~ 79 (250)
+||+|+++.-....+. .--.+.|++ .+.++.++++.. -+.|-. ..-.+||++|..|-.+.-. ...
T Consensus 2 ~kigIV~s~fn~~~L~-------~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~-h~d 73 (155)
T PRK06455 2 MKIGIADTTFARVDMG-------SAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPTE-KDK 73 (155)
T ss_pred cEEEEEEEecchHHHH-------HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceeccC-cch
Confidence 6899998554332211 112355666 446666666532 132210 0114699999999653221 112
Q ss_pred hH--HHHHHHHHHHHhcCCcEEEE
Q 025645 80 WI--LKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 80 ~~--~~~~~~i~~~~~~~~PilGI 101 (250)
++ .-...+++..++.++||.=+
T Consensus 74 ~Va~~vS~GL~~lsL~t~~PVi~v 97 (155)
T PRK06455 74 YCAHEASIGLIMAQLMTNKHIIEV 97 (155)
T ss_pred hHHHHHHHHHHHHHhhhCCCEEEE
Confidence 22 22234455555666776544
No 267
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=57.39 E-value=14 Score=30.92 Aligned_cols=81 Identities=14% Similarity=0.084 Sum_probs=43.9
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCC-----CCCcCEEEEcCCCCCCCCCChhHH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFND-----LHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-----l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
+|+++..+...+++.. ...-+.+.+++.|.++.++... +.-..... -.++||||+.+... .
T Consensus 1 ~Ig~v~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~-~-------- 66 (289)
T cd01540 1 KIGFIVKQPEEPWFQT----EWKFAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDV-K-------- 66 (289)
T ss_pred CeeeecCCCCCcHHHH----HHHHHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCch-h--------
Confidence 5788875554444332 2334567788889887655322 11000000 14689999986321 1
Q ss_pred HHHHHHHHHHhcCCcEEEEe
Q 025645 83 KLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGIC 102 (250)
.....++.+.+.++|++.+.
T Consensus 67 ~~~~~~~~~~~~~iPvV~~~ 86 (289)
T cd01540 67 LGPAIVAKAKAYNMKVVAVD 86 (289)
T ss_pred hhHHHHHHHHhCCCeEEEec
Confidence 11234566667788877653
No 268
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=57.35 E-value=26 Score=28.65 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=32.9
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-C---C--CCCcCEEEEcCC
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-N---D--LHKYDGFVISGS 70 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~---~--l~~~dglIi~Gg 70 (250)
|+|+..+.++++... +...+.+.+++.|..+.+......+.... . . -.++||+|+.+.
T Consensus 2 i~vi~~~~~~~~~~~----~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (264)
T cd01574 2 IGVVTTDLALHGPSS----TLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAP 65 (264)
T ss_pred EEEEeCCCCcccHHH----HHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCC
Confidence 778876665554332 33445677888888877664322110000 0 0 146899999864
No 269
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.79 E-value=29 Score=28.57 Aligned_cols=81 Identities=9% Similarity=-0.019 Sum_probs=41.1
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC--C-----CCCCcCEEEEcCCCCCCCCCChh
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF--N-----DLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~-----~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
+|+++..+...+++... ...+.+.+++.|..+.++......-++. . .-.++||+|+.+...+
T Consensus 1 ~Ig~v~~~~~~~~~~~~----~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~------- 69 (271)
T cd06321 1 KIGVSVGDLGNPFFVAL----AKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSK------- 69 (271)
T ss_pred CeEEEecccCCHHHHHH----HHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCChh-------
Confidence 47888866666554332 3345667777444444332211111100 0 0247899999753211
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
...+.++.+.+.++|++-+
T Consensus 70 --~~~~~i~~~~~~~ipvv~~ 88 (271)
T cd06321 70 --GIAPAVKRAQAAGIVVVAV 88 (271)
T ss_pred --HhHHHHHHHHHCCCeEEEe
Confidence 1123445566667887666
No 270
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=56.76 E-value=38 Score=27.33 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=26.6
Q ss_pred HHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEE
Q 025645 32 FVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVL 99 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pil 99 (250)
+.++|.+.|+.++++.. ..+|++|..||+|.-.... +...+-++++.+.|--++
T Consensus 35 ~y~al~~~gi~vDvv~~-------~~dL~~Ykllv~P~~~~l~-------~~~~~~L~~yV~~GG~li 88 (207)
T PF08532_consen 35 WYRALRELGIPVDVVSP-------DDDLSGYKLLVLPSLYILS-------PEFAERLRAYVENGGTLI 88 (207)
T ss_dssp HHHHHHTTT--EEEE-T-------TS--TT-SEEEES--SC---------HHH---HHHHHT-SS-EE
T ss_pred HHHHHHHcCCceEEecC-------cCCcccCcEEEEeeEEEEC-------hHHHHHHHHHHHCCCEEE
Confidence 44688999999999872 2368899999999753221 344455566666554443
No 271
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=56.62 E-value=28 Score=28.11 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=43.3
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----CCCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----NDLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
+|+++......++.... ...+...+++.|.++.+.....+..... ..-.++|++|+.+...+..
T Consensus 1 ~i~~v~~~~~~~~~~~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~------- 69 (264)
T cd06267 1 TIGVIVPDISNPFFAEL----LRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDE------- 69 (264)
T ss_pred CEEEEECCCCCHHHHHH----HHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchH-------
Confidence 37788766555543322 2345566777787776554221100000 0014789999987643321
Q ss_pred HHHHHHHHHHhcCCcEEEE
Q 025645 83 KLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGI 101 (250)
. ++.+.+.++|++.+
T Consensus 70 --~--~~~~~~~~ipvv~~ 84 (264)
T cd06267 70 --L--LEELAALGIPVVLV 84 (264)
T ss_pred --H--HHHHHHcCCCEEEe
Confidence 1 45566778888766
No 272
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=56.24 E-value=32 Score=29.45 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=33.5
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-C-----CCCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-N-----DLHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~-----~l~~~dglIi~Gg 70 (250)
...|+++..+...+++.. ...-+.+.+++.|..+.+..... +.... . .-.++||||+.+.
T Consensus 61 ~~~Igvv~~~~~~~~~~~----l~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 61 TRSIGLIIPDLENTSYAR----IAKYLERQARQRGYQLLIACSDD-QPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred CceEEEEeCCCCCchHHH----HHHHHHHHHHHcCCEEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 346899876544444322 23345667788898877654321 11000 0 0146899999764
No 273
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=56.19 E-value=26 Score=28.33 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=42.1
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
||+++......+... .+..-+.+.+++.|.++.++....+...... .-.++|++|+.+...+..
T Consensus 1 ~ig~v~~~~~~~~~~----~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~------- 69 (264)
T cd01537 1 TIGVLVPDLDNPFFA----QVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAP------- 69 (264)
T ss_pred CeEEEEcCCCChHHH----HHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcch-------
Confidence 478887554443322 2334456677888887766543221100000 013689999986533221
Q ss_pred HHHHHHHHHHhcCCcEEEE
Q 025645 83 KLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGI 101 (250)
. .++.+.+.++|++.+
T Consensus 70 --~-~~~~l~~~~ip~v~~ 85 (264)
T cd01537 70 --T-IVKLARKAGIPVVLV 85 (264)
T ss_pred --h-HHHHhhhcCCCEEEe
Confidence 1 234555667787665
No 274
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=56.14 E-value=9.4 Score=32.23 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCceEEEEeecCCCCCC-----CCCCCcCEEEEcCCCCCCCCC
Q 025645 29 FNVFVAAFGEEGERWDLFRVVEGDFPDF-----NDLHKYDGFVISGSPYDAYGN 77 (250)
Q Consensus 29 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~l~~~dglIi~Gg~~~~~~~ 77 (250)
..++.+.|.+.|+++..+.+..++.... ...+++|-||++||-+-..||
T Consensus 23 a~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT~DD 76 (255)
T COG1058 23 AAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPTHDD 76 (255)
T ss_pred HHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCCccH
Confidence 3568899999999998877665442211 113569999999987655454
No 275
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.15 E-value=28 Score=28.67 Aligned_cols=79 Identities=19% Similarity=0.138 Sum_probs=41.8
Q ss_pred EEEEecCC-CChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC----C--CCCCcCEEEEcCCCCCCCCCChhH
Q 025645 9 YALFLAAK-DSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF----N--DLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 9 iail~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~----~--~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
|+++..+. ..++... ...-+...+++.|.++.++... .+.... . .-.++||+|+.+...+.
T Consensus 2 i~vi~p~~~~~~~~~~----~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiii~~~~~~~------- 69 (275)
T cd06317 2 IGYTQNNVGSHSYQTT----YNKAFQAAAEEDGVEVIVLDAN-GDVARQAAQVEDLIAQKVDGIILWPTDGQA------- 69 (275)
T ss_pred eEEEecccCCCHHHHH----HHHHHHHHHHhcCCEEEEEcCC-cCHHHHHHHHHHHHHcCCCEEEEecCCccc-------
Confidence 67777554 4444322 2334556677789887665321 110000 0 01478999997642211
Q ss_pred HHHHHHHHHHHhcCCcEEEE
Q 025645 82 LKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGI 101 (250)
..+.++.+.+.++|++.+
T Consensus 70 --~~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 70 --YIPGLRKAKQAGIPVVIT 87 (275)
T ss_pred --cHHHHHHHHHCCCcEEEe
Confidence 122345566678887654
No 276
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=54.81 E-value=72 Score=22.38 Aligned_cols=78 Identities=19% Similarity=0.088 Sum_probs=41.9
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
.++|.++ |+.+...-. ....+.+.+++.|.++++......+.++ ...++|.|+++.- +....
T Consensus 3 ~~~ILl~-C~~G~sSS~-----l~~k~~~~~~~~gi~~~v~a~~~~~~~~--~~~~~Dvill~pq----------i~~~~ 64 (95)
T TIGR00853 3 ETNILLL-CAAGMSTSL-----LVNKMNKAAEEYGVPVKIAAGSYGAAGE--KLDDADVVLLAPQ----------VAYML 64 (95)
T ss_pred ccEEEEE-CCCchhHHH-----HHHHHHHHHHHCCCcEEEEEecHHHHHh--hcCCCCEEEECch----------HHHHH
Confidence 3566655 776632200 1234567888899998776654433322 3457886666532 12223
Q ss_pred HHHHH-HHhcCCcEEEE
Q 025645 86 FMLQT-LDAMQKKVLGI 101 (250)
Q Consensus 86 ~~i~~-~~~~~~PilGI 101 (250)
+-++. +.+.++|+.-|
T Consensus 65 ~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 65 PDLKKETDKKGIPVEVI 81 (95)
T ss_pred HHHHHHhhhcCCCEEEe
Confidence 33343 33456788655
No 277
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=54.60 E-value=28 Score=28.62 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=42.0
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
|+|+..+...+++.. +..-+.+.+++.|.++.+.....+.....+ .-.++||||+.+...+ .
T Consensus 2 i~vi~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~--------~- 68 (270)
T cd06296 2 IGLVFPDLDSPWASE----VLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPELT--------S- 68 (270)
T ss_pred eEEEECCCCCccHHH----HHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCC--------h-
Confidence 678876555554332 223456677888888766653322100000 0146899999754211 0
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 025645 84 LCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGI 101 (250)
..++.+.+.++|++-+
T Consensus 69 --~~~~~~~~~~ipvV~i 84 (270)
T cd06296 69 --AQRAALRRTGIPFVVV 84 (270)
T ss_pred --HHHHHHhcCCCCEEEE
Confidence 1245555667887655
No 278
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=54.16 E-value=39 Score=27.98 Aligned_cols=80 Identities=13% Similarity=0.045 Sum_probs=43.3
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC--CC-----CCCcCEEEEcCCCCCCCCCChh
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF--ND-----LHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~-----l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
||+|+..+...+++.. ...-+.+.+++.|.++.+......+-... .. -.++||||+.+...+
T Consensus 1 ~Igvi~~~~~~~f~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~------- 69 (268)
T cd06306 1 KLCVLYPHLKDAYWLS----VNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPD------- 69 (268)
T ss_pred CeEEEcCCCCCHHHHH----HHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChh-------
Confidence 5888886655554332 22345567788898876653221110000 01 147999999853211
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
... .++.+.+.++|++-+
T Consensus 70 --~~~-~~~~~~~~giPvV~~ 87 (268)
T cd06306 70 --GLN-EILQQVAASIPVIAL 87 (268)
T ss_pred --hHH-HHHHHHHCCCCEEEe
Confidence 111 235556678887644
No 279
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=54.00 E-value=28 Score=29.67 Aligned_cols=80 Identities=15% Similarity=0.040 Sum_probs=41.8
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCC-----CCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFND-----LHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-----l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
|+++...-.++++. .....+.+.+++.|.++.+.....+....... -.++||||+.+...+ .
T Consensus 1 ig~~~~~~~~~~~~----~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~---------~ 67 (302)
T TIGR02634 1 IGVSIDDLRLERWQ----KDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNGQ---------V 67 (302)
T ss_pred CeeecCccchhhHH----HHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh---------H
Confidence 45665555555433 23445677888889887655422111000001 146899999863211 1
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 025645 84 LCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGI 101 (250)
....++.+.+.++|+..+
T Consensus 68 ~~~~l~~~~~~~iPvV~~ 85 (302)
T TIGR02634 68 LSNAVQEAKDEGIKVVAY 85 (302)
T ss_pred HHHHHHHHHHCCCeEEEe
Confidence 223455556667776544
No 280
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=53.92 E-value=39 Score=29.29 Aligned_cols=86 Identities=6% Similarity=0.052 Sum_probs=47.6
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChh--HHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNW--ILK 83 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~--~~~ 83 (250)
.+||-|++++..... -....++.|++.|+++.++. ++. --..++++|.+++..- +...+... ..+
T Consensus 143 ~k~~~V~VtESRP~~-------eG~~~ak~L~~~gI~~~~I~--Dsa--~~~~~~~vd~VivGad--~I~~nG~lvnkiG 209 (301)
T COG1184 143 GKRFKVIVTESRPRG-------EGRIMAKELRQSGIPVTVIV--DSA--VGAFMSRVDKVLVGAD--AILANGALVNKIG 209 (301)
T ss_pred CCceEEEEEcCCCcc-------hHHHHHHHHHHcCCceEEEe--chH--HHHHHHhCCEEEECcc--ceecCCcEEeccc
Confidence 456777776654321 13456789999999988774 110 0012356787777532 11111111 112
Q ss_pred HHHHHHHHHhcCCcEEEEehH
Q 025645 84 LCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G 104 (250)
-..+.-.+.+.++|++..|--
T Consensus 210 T~~lA~~A~e~~~Pf~v~aes 230 (301)
T COG1184 210 TSPLALAARELRVPFYVVAES 230 (301)
T ss_pred hHHHHHHHHHhCCCEEEEeee
Confidence 333445567789999998843
No 281
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=53.88 E-value=13 Score=35.00 Aligned_cols=67 Identities=12% Similarity=0.183 Sum_probs=41.3
Q ss_pred cceEEEEecCCCCh------hHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----CCCCCcCEEEEcCCCC
Q 025645 6 EKRYALFLAAKDSD------YVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----NDLHKYDGFVISGSPY 72 (250)
Q Consensus 6 ~~riail~~~~~~~------~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~l~~~dglIi~Gg~~ 72 (250)
+.||+||.+++.-- ..-+.|.+-..++..++++.|.++..+.+..++.... ..++++|.||++||.+
T Consensus 179 rprV~IisTGdELv~pg~~l~~G~I~dsNs~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGtS 256 (546)
T PRK14497 179 KPKIYLIATGDELVEPGNSLSPGKIYESNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGTS 256 (546)
T ss_pred CCEEEEEEcCCcccCCCCCCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 45899998774210 0123344444577888999998876665544432210 1235789999999854
No 282
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=53.60 E-value=88 Score=28.64 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=34.1
Q ss_pred CccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC----C----------CCCCCCCCcCEEEE
Q 025645 2 DLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD----F----------PDFNDLHKYDGFVI 67 (250)
Q Consensus 2 ~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----~----------~~~~~l~~~dglIi 67 (250)
+..+.+||+|+..+..- ...++++|.+.|.++........+ + ..++.++++|.||+
T Consensus 3 ~~~~~~~v~viG~G~sG----------~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~ 72 (461)
T PRK00421 3 ELRRIKRIHFVGIGGIG----------MSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVY 72 (461)
T ss_pred CcCCCCEEEEEEEchhh----------HHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEE
Confidence 33345678888755311 122467888888887665432110 0 01123457899999
Q ss_pred cCCC
Q 025645 68 SGSP 71 (250)
Q Consensus 68 ~Gg~ 71 (250)
+.|-
T Consensus 73 spgi 76 (461)
T PRK00421 73 SSAI 76 (461)
T ss_pred CCCC
Confidence 8774
No 283
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=53.25 E-value=51 Score=29.50 Aligned_cols=60 Identities=15% Similarity=0.053 Sum_probs=36.6
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEE---EEehHHHHH-HHHcCceEEec
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVL---GICFGHQVL-CRALGGKVGKA 119 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pil---GIC~G~Qll-a~a~gg~v~~~ 119 (250)
.++|+|+++|..+...+..+........++++...++||+ ||..|..++ |.++|++..-.
T Consensus 244 ~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~i 307 (367)
T PLN02493 244 AGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 307 (367)
T ss_pred cCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 4689999997544333333222233333344444568887 788899887 56788765543
No 284
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=52.85 E-value=29 Score=28.77 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=33.2
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC-C-C-CCC--CCcCEEEEcCC
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP-D-F-NDL--HKYDGFVISGS 70 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-~-~-~~l--~~~dglIi~Gg 70 (250)
|+++..+...++.. .....+.+.+++.|.++.+......+.. . . ..+ .++||||+.+.
T Consensus 2 Igvi~p~~~~~~~~----~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (269)
T cd06297 2 ISVLLPVVATEFYR----RLLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASY 64 (269)
T ss_pred EEEEeCCCcChhHH----HHHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 67777655454422 2334567788888988877654321100 0 0 011 36899999864
No 285
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=52.71 E-value=1.1e+02 Score=26.56 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=29.3
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeec
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVE 50 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 50 (250)
|+++||+||--+...+.-...- ......+.|.+.|.++..+.+..
T Consensus 1 m~~~~i~vl~GG~S~E~~vSl~--s~~~v~~~l~~~~~~~~~~~~~~ 45 (333)
T PRK01966 1 MMKMRVALLFGGRSAEHEVSLV--SAKSVLKALDKEKYEVVPIGITK 45 (333)
T ss_pred CCCcEEEEEeCCCCCcchhhHH--HHHHHHHHhcccCCEEEEEEECC
Confidence 3467999998665554322211 12456688888999988877654
No 286
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=52.43 E-value=13 Score=35.60 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=41.6
Q ss_pred ccceEEEEecCCCChh------HHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCC
Q 025645 5 EEKRYALFLAAKDSDY------VLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPY 72 (250)
Q Consensus 5 ~~~riail~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~ 72 (250)
++.||+|+.++..--. ..+.|.+..-++..+|++.|.++..+.+..++... ...++++|.||.+||.+
T Consensus 366 ~~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG~s 444 (597)
T PRK14491 366 RRPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGGVS 444 (597)
T ss_pred cCCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 3568999987643110 11233444456888999999987766554433211 01235689999999854
No 287
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=51.53 E-value=62 Score=23.75 Aligned_cols=38 Identities=32% Similarity=0.559 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCC
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGS 70 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg 70 (250)
+.+.+.+.+.|.++.++.+... +..++.++|+||+..+
T Consensus 17 ~~i~~~~~~~g~~v~~~~~~~~---~~~~l~~~d~iilgsp 54 (140)
T TIGR01753 17 NIIAEGLKEAGAEVDLLEVADA---DAEDLLSYDAVLLGCS 54 (140)
T ss_pred HHHHHHHHhcCCeEEEEEcccC---CHHHHhcCCEEEEEcC
Confidence 3455667777888887765432 2234667898887743
No 288
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=51.29 E-value=19 Score=29.43 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=40.5
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-CC-----CCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-FN-----DLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~-----~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
|+++..+.+.+++.. +..-+.+.+++.|..+.++.... +... .. .-.++||||+.+...+.
T Consensus 2 igvi~~~~~~~~~~~----~~~~i~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~~dgiii~~~~~~~-------- 68 (267)
T cd06283 2 IGVIVADITNPFSSL----VLKGIEDVCRAHGYQVLVCNSDN-DPEKEKEYLESLLAYQVDGLIVNPTGNNK-------- 68 (267)
T ss_pred EEEEecCCccccHHH----HHHHHHHHHHHcCCEEEEEcCCC-CHHHHHHHHHHHHHcCcCEEEEeCCCCCh--------
Confidence 677775555544332 23345667778888776554221 1100 00 01468999998642211
Q ss_pred HHHHHHHHHHhcCCcEEEE
Q 025645 83 KLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGI 101 (250)
. .++.+.+.++|+..+
T Consensus 69 ~---~l~~~~~~~ipvV~~ 84 (267)
T cd06283 69 E---LYQRLAKNGKPVVLV 84 (267)
T ss_pred H---HHHHHhcCCCCEEEE
Confidence 1 134455567787665
No 289
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.01 E-value=37 Score=27.73 Aligned_cols=77 Identities=14% Similarity=0.087 Sum_probs=40.5
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC--C-----CCCCcCEEEEcCCCCCCCCCChhH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF--N-----DLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~-----~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
|+++..+...++... +..-+.+.+++.|.++.++.... + +.. . .-.++||+|+.+...+.
T Consensus 2 I~vi~~~~~~~~~~~----~~~g~~~~a~~~g~~~~~~~~~~-~-~~~~~~~i~~~~~~~vdgiii~~~~~~~------- 68 (268)
T cd06289 2 IGLVINDLTNPFFAE----LAAGLEEVLEEAGYTVFLANSGE-D-VERQEQLLSTMLEHGVAGIILCPAAGTS------- 68 (268)
T ss_pred EEEEecCCCcchHHH----HHHHHHHHHHHcCCeEEEecCCC-C-hHHHHHHHHHHHHcCCCEEEEeCCCCcc-------
Confidence 678775544444322 22334567777887765442111 1 110 0 01468999998642211
Q ss_pred HHHHHHHHHHHhcCCcEEEE
Q 025645 82 LKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGI 101 (250)
.+.++.+.+.++|+.-+
T Consensus 69 ---~~~~~~~~~~~ipvV~~ 85 (268)
T cd06289 69 ---PDLLKRLAESGIPVVLV 85 (268)
T ss_pred ---HHHHHHHHhcCCCEEEE
Confidence 11345566678887654
No 290
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=50.91 E-value=37 Score=30.14 Aligned_cols=121 Identities=18% Similarity=0.158 Sum_probs=68.9
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCC
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPC 139 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~ 139 (250)
.++|+|-++=||+-+..- ..++.....-+...++|++|| |++.|.|+-.+..... .++-.-.+
T Consensus 102 ~dldaIAVT~gPGl~lsL---~vGl~fA~glA~~l~kPlipV---HHMeAHAL~~rl~~~~--v~FPFl~l--------- 164 (405)
T KOG2707|consen 102 KDLDAIAVTRGPGLPLSL---KVGLSFAKGLAVKLQKPLIPV---HHMEAHALSIRLVDDS--VRFPFLAL--------- 164 (405)
T ss_pred ccceeEEEecCCCceeeh---hhhHHHHHHHHHhccCCccch---hHHHHhHHHHHhccCC--cCCceeeE---------
Confidence 468999999888755321 234444445566779999999 8888888866554321 11111111
Q ss_pred CcccccCCCCCceEEEeeecccc-cccCCccEEEEEcCCCc-eEEEEECCcEEEEecCCCCCHHHHHHHHHHHh
Q 025645 140 SFLEDLGEIPGSLSIMECHRDEV-WKVPIGAEVIGFSDKTG-VEMFTIGDHILGIQGHPEYTKDILYNLIDRLL 211 (250)
Q Consensus 140 ~l~~~~~~l~~~~~~~~~H~~~v-~~lp~~~~~la~s~~~~-v~~~~~~~~~~g~QfHPE~~~~~~~~~~~~~~ 211 (250)
.+...|..-| .+-..++++++.+-|.. =+++..-.+-+|+-+||| ...-+..+++.+.
T Consensus 165 -------------LvSGGH~llvla~~~~~~~llg~TvDiApGe~lDK~ar~Lgl~~~~e-~~~~~g~aie~la 224 (405)
T KOG2707|consen 165 -------------LVSGGHTLLVLANGVGDHELLGQTVDIAPGEALDKCARRLGLLGHPE-DARSGGKAIEHLA 224 (405)
T ss_pred -------------eeeCCceEEEEeccccceeeeecccccchHHHHHHHHHHhcCCCCcc-chhhhhhHHHHHH
Confidence 1222233222 23345677887775543 234443336789999999 4444555555443
No 291
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.74 E-value=83 Score=28.89 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=33.3
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC--------------CCCCCCCcCEEE
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP--------------DFNDLHKYDGFV 66 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~--------------~~~~l~~~dglI 66 (250)
|.+-..+||+|+..+..- ...+++|.. |+++.+..-.....+ ....+.++|.||
T Consensus 1 ~~~~~~~~v~v~G~G~sG-----------~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV 68 (454)
T PRK01368 1 MNSHTKQKIGVFGLGKTG-----------ISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIV 68 (454)
T ss_pred CcCCCCCEEEEEeecHHH-----------HHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEE
Confidence 555566789998766421 223567774 887766541100000 011245689899
Q ss_pred EcCCC
Q 025645 67 ISGSP 71 (250)
Q Consensus 67 i~Gg~ 71 (250)
++.|-
T Consensus 69 ~SPgI 73 (454)
T PRK01368 69 LSPGI 73 (454)
T ss_pred ECCCC
Confidence 98774
No 292
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=50.62 E-value=30 Score=28.42 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=41.6
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-C-----CCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-N-----DLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~-----~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
|+|+......++.. .+..-+.+.+++.|..+.++....+. ... . .-.++||+|+.+...+ .
T Consensus 2 igvi~p~~~~~~~~----~~~~g~~~~a~~~g~~~~~~~~~~~~-~~~~~~i~~~~~~~vdgii~~~~~~~--------~ 68 (268)
T cd06270 2 IGLVVSDLDGPFFG----PLLSGVESVARKAGKHLIITAGHHSA-EKEREAIEFLLERRCDALILHSKALS--------D 68 (268)
T ss_pred EEEEEccccCcchH----HHHHHHHHHHHHCCCEEEEEeCCCch-HHHHHHHHHHHHcCCCEEEEecCCCC--------H
Confidence 67777655554432 22334567788889888765432111 100 0 1147899999874211 1
Q ss_pred HHHHHHHHHHhcCCcEEEE
Q 025645 83 KLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGI 101 (250)
. .++.+.+.++|+.-+
T Consensus 69 ~---~~~~~~~~~ipvV~~ 84 (268)
T cd06270 69 D---ELIELAAQVPPLVLI 84 (268)
T ss_pred H---HHHHHhhCCCCEEEE
Confidence 1 145555667776544
No 293
>PRK00170 azoreductase; Reviewed
Probab=50.61 E-value=45 Score=26.47 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=26.1
Q ss_pred ceEEEEecCCCCh-hHHHhhCCHHHHHHHHHhcC--CCceEEEEeecCCCC
Q 025645 7 KRYALFLAAKDSD-YVLKVYGGYFNVFVAAFGEE--GERWDLFRVVEGDFP 54 (250)
Q Consensus 7 ~riail~~~~~~~-~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~~~~ 54 (250)
|||++|..++... -... ...+.+.+.+++. |.+++++++...++|
T Consensus 2 mkil~i~gSpr~~~s~s~---~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p 49 (201)
T PRK00170 2 SKVLVIKSSILGDYSQSM---QLGDAFIEAYKEAHPDDEVTVRDLAAEPIP 49 (201)
T ss_pred CeEEEEecCCCCCCcHHH---HHHHHHHHHHHHhCCCCeEEEEECCCCCCC
Confidence 5899998776543 1110 1223345566666 788888876554443
No 294
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.27 E-value=32 Score=29.23 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=41.4
Q ss_pred EEEEecCC-CChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC----C-CC--CcCEEEEcCCCCCCCCCChh
Q 025645 9 YALFLAAK-DSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN----D-LH--KYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 9 iail~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~----~-l~--~~dglIi~Gg~~~~~~~~~~ 80 (250)
|+|+..+. ..+++.. ....+.+.+++.|.++.+.....+...... . -. ++||||+.+... .
T Consensus 2 Igvi~~~~~~~~~~~~----~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~-~------ 70 (305)
T cd06324 2 VVFLNPGKSDEPFWNS----VARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKS-V------ 70 (305)
T ss_pred eEEecCCCCCCcHHHH----HHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCcc-c------
Confidence 77877554 4544332 233456777888888766542211100000 0 14 799999975421 1
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
..+.++.+.+.++|++-+
T Consensus 71 ---~~~~~~~~~~~giPvV~~ 88 (305)
T cd06324 71 ---APELLRLAEGAGVKLFLV 88 (305)
T ss_pred ---hHHHHHHHHhCCCeEEEE
Confidence 112345555667776543
No 295
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=50.23 E-value=1.4e+02 Score=28.31 Aligned_cols=82 Identities=21% Similarity=0.154 Sum_probs=45.6
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeec-CCC--CCCCCCCCcCEEEEcCCCCCCCCCChhH
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVE-GDF--PDFNDLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~--~~~~~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
..++|+++. +++...... ...+.+.|+ .+.++..+.... ... ..+++|.++|.+||.|-..+. .
T Consensus 182 ~~~~V~~l~-ghGE~~~~~-----~~~l~~~L~-~~y~v~~l~l~~~~~~~~~ip~~l~d~d~LvI~~P~~~l------s 248 (552)
T TIGR03521 182 REKRIAVLK-GNGELADLQ-----IADLVSTLK-EYYFIAPFTLDSVAANPAKTLADLKKFDLIVIAKPTEAF------S 248 (552)
T ss_pred cCceEEEEe-CCCCCChHH-----HHHHHHHHH-hcCceeeecchhcccCcccccccccCcCEEEEeCCCccC------C
Confidence 356788886 333221110 133556666 566666665432 111 123346689999999753333 2
Q ss_pred HHHHHHHHHHHhcCCcEE
Q 025645 82 LKLCFMLQTLDAMQKKVL 99 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~Pil 99 (250)
+.+...|++++..|.++|
T Consensus 249 ~~e~~~Ldqfl~~GG~ll 266 (552)
T TIGR03521 249 EREKYILDQYIMNGGKAL 266 (552)
T ss_pred HHHHHHHHHHHHcCCeEE
Confidence 456677777777776654
No 296
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.16 E-value=32 Score=28.26 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=40.6
Q ss_pred EEEEecC---CCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CCC--CCCcCEEEEcCCCCCCCCCChh
Q 025645 9 YALFLAA---KDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FND--LHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 9 iail~~~---~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~~--l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
|+|+..+ ...+++... ...+.+.+++.|..+.........-.. ... -.++||||+.+...+
T Consensus 2 vgv~~~~~~~~~~~~~~~~----~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~------- 70 (268)
T cd06277 2 IGLIASKRILNSPAFYSEI----YRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGIST------- 70 (268)
T ss_pred eEEEEeccccccCCcHHHH----HHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCCCh-------
Confidence 6777755 334433322 233566777889887766543221000 000 147999999763211
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
. .++.+.+.++|++.+
T Consensus 71 --~---~~~~l~~~~ipvV~~ 86 (268)
T cd06277 71 --E---YIKEIKELGIPFVLV 86 (268)
T ss_pred --H---HHHHHhhcCCCEEEE
Confidence 1 145555667776654
No 297
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=50.01 E-value=85 Score=26.43 Aligned_cols=33 Identities=6% Similarity=0.151 Sum_probs=23.8
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
+..+|.||++.-.. ....|+++..-++|+.|+|
T Consensus 116 f~~P~llIV~Dp~~-----------d~qAI~EA~~lnIPvIal~ 148 (249)
T PTZ00254 116 FMEPRLLIVTDPRT-----------DHQAIREASYVNIPVIALC 148 (249)
T ss_pred cCCCCEEEEeCCCc-----------chHHHHHHHHhCCCEEEEe
Confidence 34578899885211 1346788888899999999
No 298
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=50.00 E-value=26 Score=29.95 Aligned_cols=61 Identities=10% Similarity=-0.003 Sum_probs=33.3
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg 70 (250)
...|+++..+...+++.. +...+.+.+++.|..+.+.....+.-.... .-.++||+|+.+.
T Consensus 59 ~~~Igvv~~~~~~~f~~~----l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 59 TTTVGVIIPDISNIYYAE----LARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred CCEEEEEeCCCCchhHHH----HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 346999886544444322 233455677778888766542211100000 0146899999763
No 299
>PRK09701 D-allose transporter subunit; Provisional
Probab=50.00 E-value=78 Score=27.00 Aligned_cols=83 Identities=14% Similarity=0.168 Sum_probs=45.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC-CCCCC-C---C--CCCcCEEEEcCCCCCCCCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG-DFPDF-N---D--LHKYDGFVISGSPYDAYGND 78 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~~-~---~--l~~~dglIi~Gg~~~~~~~~ 78 (250)
..+|+++..+...+++... ..-+.+.+++.|.++.++..... +.... . . -.++||+||.+...+.
T Consensus 24 ~~~Igvi~~~~~~~f~~~~----~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~---- 95 (311)
T PRK09701 24 AAEYAVVLKTLSNPFWVDM----KKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVN---- 95 (311)
T ss_pred CCeEEEEeCCCCCHHHHHH----HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHH----
Confidence 4589999876666654332 23345677788888776532111 11000 0 0 1468999998642111
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEE
Q 025645 79 NWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 79 ~~~~~~~~~i~~~~~~~~PilGI 101 (250)
....+..+.+.++|+.-+
T Consensus 96 -----~~~~l~~~~~~giPvV~~ 113 (311)
T PRK09701 96 -----LVMPVARAWKKGIYLVNL 113 (311)
T ss_pred -----HHHHHHHHHHCCCcEEEe
Confidence 111234455667887644
No 300
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=49.44 E-value=76 Score=26.13 Aligned_cols=82 Identities=15% Similarity=0.124 Sum_probs=42.7
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEee--cC-CCCC----CCC-CCCcCEEEEcCCCCCCCCCCh
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVV--EG-DFPD----FND-LHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~--~~-~~~~----~~~-l~~~dglIi~Gg~~~~~~~~~ 79 (250)
||+++..+...+++... ...+.+.+++.|.......+. .. +... ... ..++||+|+.+...
T Consensus 1 ~ig~v~~~~~~~~~~~~----~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vdgiii~~~~~------- 69 (275)
T cd06307 1 RLGFLLPKGSNAFYREL----AAALEAAAAAFPDARIRVRIHFVESFDPAALAAALLRLGARSDGVALVAPDH------- 69 (275)
T ss_pred CeEEEeCCCCChHHHHH----HHHHHHHHhhhhccCceEEEEEccCCCHHHHHHHHHHHHhcCCEEEEeCCCc-------
Confidence 58888876665553322 234556667766544333221 11 1000 000 12799999975321
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEe
Q 025645 80 WILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGIC 102 (250)
....+.++.+.+.++|++-+.
T Consensus 70 --~~~~~~i~~~~~~~ipvV~~~ 90 (275)
T cd06307 70 --PQVRAAVARLAAAGVPVVTLV 90 (275)
T ss_pred --HHHHHHHHHHHHCCCcEEEEe
Confidence 122345566667788987653
No 301
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.23 E-value=48 Score=27.01 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=42.3
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
|+++..+...++.... ..-+.+.+++.|..+.++...... .... .-.++||+|+.+...+ .
T Consensus 2 I~~i~~~~~~~~~~~~----~~~i~~~~~~~g~~~~~~~~~~~~-~~~~~i~~~~~~~vdgiii~~~~~~--------~- 67 (266)
T cd06278 2 IGVVVADLDNPFYSEL----LEALSRALQARGYQPLLINTDDDE-DLDAALRQLLQYRVDGVIVTSGTLS--------S- 67 (266)
T ss_pred EEEEeCCCCCchHHHH----HHHHHHHHHHCCCeEEEEcCCCCH-HHHHHHHHHHHcCCCEEEEecCCCC--------H-
Confidence 6777755555544332 233567788889887766433211 0000 1147899999764211 1
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 025645 84 LCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGI 101 (250)
..++.+.+.++|+..+
T Consensus 68 --~~~~~~~~~~ipvV~~ 83 (266)
T cd06278 68 --ELAEECRRNGIPVVLI 83 (266)
T ss_pred --HHHHHHhhcCCCEEEE
Confidence 1245555668887665
No 302
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=49.00 E-value=62 Score=25.22 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=46.0
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCC---ceEEEEeec-CCCCCC----CCCCCcCEEEEcCCCCCC-C
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGE---RWDLFRVVE-GDFPDF----NDLHKYDGFVISGSPYDA-Y 75 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~-~~~~~~----~~l~~~dglIi~Gg~~~~-~ 75 (250)
...||+|+...-..+ +.+. ..+-..+.|.+.|. +++++++.. -+.|.. ..-.+||++|..|---.- .
T Consensus 9 ~~~riaIV~srfn~~-It~~---Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT 84 (158)
T PRK12419 9 TPQRIAFIQARWHAD-IVDQ---ARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGI 84 (158)
T ss_pred CCCEEEEEEecCCHH-HHHH---HHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCC
Confidence 456999997554332 1111 11112356777784 466666532 122210 112469999999842110 0
Q ss_pred CCChhHHH--HHHHHHHHHhcCCcE-EEE
Q 025645 76 GNDNWILK--LCFMLQTLDAMQKKV-LGI 101 (250)
Q Consensus 76 ~~~~~~~~--~~~~i~~~~~~~~Pi-lGI 101 (250)
....++.. ...+.+-.++.++|| +||
T Consensus 85 ~H~e~V~~~v~~gl~~vsl~~~~PV~fGV 113 (158)
T PRK12419 85 YRHEFVAQAVIDGLMRVQLDTEVPVFSVV 113 (158)
T ss_pred chhHHHHHHHHHHHHHHHhccCCCEEEEe
Confidence 11122222 344556667788995 344
No 303
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=48.71 E-value=43 Score=28.82 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=33.6
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg 70 (250)
+..|+++......+++... ..-+.+.+++.|.++.++....+.... .-.-.++||||+.++
T Consensus 59 ~~~i~vi~~~~~~~~~~~~----~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 59 TKSIGLLATSSEAPYFAEI----IEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred CCeEEEEeCCCCCchHHHH----HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3478998866555443322 233566778888776655422110000 001146899999875
No 304
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.43 E-value=88 Score=28.82 Aligned_cols=32 Identities=19% Similarity=0.035 Sum_probs=21.6
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEE
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFR 47 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 47 (250)
..+||+|+..+.. ....+++|.+.|.++.+..
T Consensus 7 ~~~~v~v~G~G~s-----------G~~~~~~l~~~g~~v~~~d 38 (468)
T PRK04690 7 EGRRVALWGWGRE-----------GRAAYRALRAHLPAQALTL 38 (468)
T ss_pred CCCEEEEEccchh-----------hHHHHHHHHHcCCEEEEEc
Confidence 4578988876632 1234678888998876654
No 305
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=48.31 E-value=25 Score=28.72 Aligned_cols=58 Identities=10% Similarity=0.053 Sum_probs=31.6
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC---CC--CCcCEEEEcCC
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN---DL--HKYDGFVISGS 70 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~---~l--~~~dglIi~Gg 70 (250)
|+++..+...+++.. +..-+.+.+++.|..+.++....+...... .+ .++||+|+.+.
T Consensus 2 i~~v~~~~~~~~~~~----~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06284 2 ILVLVPDIANPFFSE----ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDG 64 (267)
T ss_pred EEEEECCCCCccHHH----HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 677776655554332 234456778888988765542211100000 01 46899999754
No 306
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=48.29 E-value=39 Score=29.29 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=25.8
Q ss_pred CcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHH
Q 025645 61 KYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQ 106 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q 106 (250)
.+|.|||.=|.+|.. + -|.-....+.+...+..+||+ ...||+
T Consensus 75 ~~Dviii~RGGGs~e-D-L~~FN~e~varai~~~~~Pvi-saIGHe 117 (319)
T PF02601_consen 75 DFDVIIIIRGGGSIE-D-LWAFNDEEVARAIAASPIPVI-SAIGHE 117 (319)
T ss_pred cccEEEEecCCCChH-H-hcccChHHHHHHHHhCCCCEE-EecCCC
Confidence 699999993334431 1 122234466777778889976 234554
No 307
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=47.81 E-value=35 Score=29.25 Aligned_cols=81 Identities=9% Similarity=0.043 Sum_probs=42.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
...|+++..+...+++. ....-+.+.+++.|.++.+.....+.-.... .-.++||+|+.+.. . .
T Consensus 63 ~~~Igvi~~~~~~~~~~----~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~~~--~-~---- 131 (331)
T PRK14987 63 SRAIGVLLPSLTNQVFA----EVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERT--H-T---- 131 (331)
T ss_pred CCEEEEEeCCCcchhHH----HHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCC--C-C----
Confidence 34688887654444432 2334456778888988765432211100000 01478999997531 1 1
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
. +.++.+.+.++|+.-+
T Consensus 132 -~---~~~~~l~~~~iPvV~~ 148 (331)
T PRK14987 132 -P---RTLKMIEVAGIPVVEL 148 (331)
T ss_pred -H---HHHHHHHhCCCCEEEE
Confidence 1 1234445567887644
No 308
>PRK10342 glycerate kinase I; Provisional
Probab=47.44 E-value=25 Score=31.60 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=26.6
Q ss_pred CCCCCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 57 NDLHKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 57 ~~l~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
+.+++.| +||+| |..+...-.. +-...+.+.+.+.++|++.||--
T Consensus 280 ~~l~~AD-LVITGEG~~D~QTl~G--K~p~gVa~~A~~~~vPviai~G~ 325 (381)
T PRK10342 280 EHIHDCT-LVITGEGRIDSQSIHG--KVPIGVANVAKKYHKPVIGIAGS 325 (381)
T ss_pred HHhccCC-EEEECCCcCcccccCC--ccHHHHHHHHHHhCCCEEEEecc
Confidence 3467788 66676 5443211111 12234556777789999999943
No 309
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=47.43 E-value=52 Score=28.25 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=32.9
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC---C--CCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN---D--LHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~---~--l~~~dglIi~Gg 70 (250)
...|+++..+...+++.. +..-+.+.+++.|..+.+.....+...... . -.++||||+.+.
T Consensus 64 ~~~Igvv~~~~~~~~~~~----i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 129 (342)
T PRK10014 64 SGVIGLIVRDLSAPFYAE----LTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGA 129 (342)
T ss_pred CCEEEEEeCCCccchHHH----HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 356899886554544322 223355677788877655432211000000 0 146899999875
No 310
>PLN02979 glycolate oxidase
Probab=47.40 E-value=71 Score=28.54 Aligned_cols=60 Identities=15% Similarity=0.053 Sum_probs=36.4
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEE---EEehHHHHH-HHHcCceEEec
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVL---GICFGHQVL-CRALGGKVGKA 119 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pil---GIC~G~Qll-a~a~gg~v~~~ 119 (250)
.++|+|+++|..+...+..+........++++...++||+ ||..|..++ |.++|+...-.
T Consensus 243 ~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~i 306 (366)
T PLN02979 243 AGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 306 (366)
T ss_pred cCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 4689999997544333333322223333344444568887 788898876 56788765543
No 311
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=47.32 E-value=16 Score=35.07 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=41.5
Q ss_pred cceEEEEecCCCCh------hHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCC
Q 025645 6 EKRYALFLAAKDSD------YVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPY 72 (250)
Q Consensus 6 ~~riail~~~~~~~------~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~ 72 (250)
..||+|+.++..-- .--..+.+...++..+|++.|.++..+.+..++... ...++++|.||++||.+
T Consensus 186 ~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s 263 (633)
T PRK14498 186 KPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTS 263 (633)
T ss_pred CcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCc
Confidence 56899998764310 011233445567888999999988766554433211 01124689999999864
No 312
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=47.22 E-value=57 Score=25.00 Aligned_cols=59 Identities=12% Similarity=-0.036 Sum_probs=31.6
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC--CCCCCCCCCcCEEEEcC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD--FPDFNDLHKYDGFVISG 69 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~l~~~dglIi~G 69 (250)
++.||.|...+-+. |.--.....++|++.|.++...-...+. ......-++.|.|.+|+
T Consensus 11 ~rprvlvak~GlDg------Hd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSs 71 (143)
T COG2185 11 ARPRVLVAKLGLDG------HDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSS 71 (143)
T ss_pred CCceEEEeccCccc------cccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEe
Confidence 45677776544221 1111245678999999987654322211 00001125789999986
No 313
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=47.07 E-value=29 Score=28.35 Aligned_cols=41 Identities=24% Similarity=0.222 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCC--C-CCCC--CCcCEEEEcCC
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFP--D-FNDL--HKYDGFVISGS 70 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~--~-~~~l--~~~dglIi~Gg 70 (250)
..+.+.+++.|.++.+......... . ...+ .++||+|+.+.
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRT 68 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4456778888988776653321100 0 0011 36899999865
No 314
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=46.85 E-value=74 Score=30.86 Aligned_cols=79 Identities=14% Similarity=0.004 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCCceEEEEeecCCC-CCC-------CCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDF-PDF-------NDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~-~~~-------~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
..+...|++.|.++..+....-.. ++. ..+.+||.||++-..+ + ....+.++...-.+.|++.|
T Consensus 16 ~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nA-V-------~~~~~~l~~~~~~~~~i~AV 87 (656)
T PRK06975 16 AALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNA-V-------DRALARLDAIWPHALPVAVV 87 (656)
T ss_pred HHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHH-H-------HHHHHHHHhhCccCCeEEEE
Confidence 346789999999887654433211 111 3467899999995421 1 11122222222246788888
Q ss_pred ehHHHHHHHHcCceE
Q 025645 102 CFGHQVLCRALGGKV 116 (250)
Q Consensus 102 C~G~Qlla~a~gg~v 116 (250)
.-+---....+|..+
T Consensus 88 G~~Ta~aL~~~Gi~~ 102 (656)
T PRK06975 88 GPGSVAALARHGIAA 102 (656)
T ss_pred CHHHHHHHHHcCCCC
Confidence 777665555666543
No 315
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=46.69 E-value=1.4e+02 Score=25.39 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=38.8
Q ss_pred HHHhcCCCceEEEEeec--CCCC-CCCCCCCcCEEEEcC--CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 34 AAFGEEGERWDLFRVVE--GDFP-DFNDLHKYDGFVISG--SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 34 ~~l~~~g~~~~~~~~~~--~~~~-~~~~l~~~dglIi~G--g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
..|.+..+.+..+...+ +++. ....+..+|-||+.| |+...--+..|+.. +-+++.+.++|++=-=+|
T Consensus 158 p~L~~~pa~~rflS~EPLLg~i~l~~~~~~~IdWVIvGGESG~~ARp~~~~Wvr~---irdqC~~~gvpFffKQwG 230 (261)
T PF07505_consen 158 PILLETPAKVRFLSCEPLLGPIDLSKLDLEGIDWVIVGGESGPGARPMHPDWVRS---IRDQCAAAGVPFFFKQWG 230 (261)
T ss_pred HHHHhCCccEEEEEeccccCCcCcccccCCCCCEEEECCCcCCCCCcCCHHHHHH---HHHHHHHcCCcEEEEeCC
Confidence 34556666655544332 2221 023566788888887 33222233456554 445677789999877777
No 316
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=46.59 E-value=19 Score=34.88 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=41.7
Q ss_pred cceEEEEecCCCCh-------hHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----CCC-CCcCEEEEcCCCC
Q 025645 6 EKRYALFLAAKDSD-------YVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----NDL-HKYDGFVISGSPY 72 (250)
Q Consensus 6 ~~riail~~~~~~~-------~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~l-~~~dglIi~Gg~~ 72 (250)
+.||+||.++..-- .--..|.+...++..++++.|.++..+.+..++.... +.+ .++|.||++||.+
T Consensus 181 kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGGts 260 (659)
T PLN02699 181 RPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILLTSGGVS 260 (659)
T ss_pred CCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 56899998764321 0123344445678889999999887766554432110 112 3689999999854
No 317
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=46.43 E-value=34 Score=27.96 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=32.0
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC-CCCCCCCCCCcCEEEEcCC
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG-DFPDFNDLHKYDGFVISGS 70 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~l~~~dglIi~Gg 70 (250)
|+|+..+...+++.. +..-+.+.+++.|..+.+...... +......-.++||+|+.+.
T Consensus 2 igvv~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 60 (261)
T cd06272 2 IGLIWPSVSRVALTE----LVTGINQAISKNGYNMNVSITPSLAEAEDLFKENRFDGVIIFGE 60 (261)
T ss_pred EEEEecCCCchhHHH----HHHHHHHHHHHcCCEEEEEecccHHHHHHHHHHcCcCEEEEeCC
Confidence 678876655554332 233456677788888776643210 0000001147999999864
No 318
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.39 E-value=45 Score=27.78 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=40.4
Q ss_pred EEEEecC-----CCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC-CCCCCCCCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 9 YALFLAA-----KDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG-DFPDFNDLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 9 iail~~~-----~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
|+|++.. ..++++.. +..-+.+.+++.|.++.++..... +......-.++||+|+.+...+ .
T Consensus 2 igvi~p~~~~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~~----~---- 69 (283)
T cd06279 2 VGVVLTDSLSYAFSDPVASQ----FLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGVPRD----D---- 69 (283)
T ss_pred EEEEeCCcccccccCccHHH----HHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCCCCC----h----
Confidence 6777754 23333222 223456778888988877653210 0000011257899999864211 0
Q ss_pred HHHHHHHHHHhcCCcEEEE
Q 025645 83 KLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGI 101 (250)
..++.+.+.++|+.-+
T Consensus 70 ---~~~~~~~~~~ipvV~~ 85 (283)
T cd06279 70 ---PLVAALLRRGLPVVVV 85 (283)
T ss_pred ---HHHHHHHHcCCCEEEE
Confidence 1244555567776533
No 319
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=46.37 E-value=13 Score=20.79 Aligned_cols=37 Identities=5% Similarity=-0.023 Sum_probs=16.2
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCce
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERW 43 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 43 (250)
|||||++.+.....++..-.+-+-.+.+.+.+.|.++
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~v 37 (38)
T PF09198_consen 1 MKIAIINMGNNIQNFKTTPSSETIYLFKCISDMGLNV 37 (38)
T ss_dssp -EEEEEESSS--SSSSSHHHHHHHHHHHHHHTTT-EE
T ss_pred CeEEEEecCCceeceeecCccceEeHHHHHHHhCCCC
Confidence 5899999765432211000001112346677777654
No 320
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=46.00 E-value=1e+02 Score=27.03 Aligned_cols=84 Identities=13% Similarity=0.065 Sum_probs=51.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC-CCCC--CCCCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG-DFPD--FNDLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~--~~~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
.++|+++- ++..++... -.+.+.+.++..|.++....+... +.+. ...+.+.|.+++|=.... ..
T Consensus 159 ak~Igv~Y-~p~E~ns~~----l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i-------~s 226 (322)
T COG2984 159 AKSIGVLY-NPGEANSVS----LVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLI-------VS 226 (322)
T ss_pred CeeEEEEe-CCCCcccHH----HHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchHH-------HH
Confidence 56898884 444322111 224577888999999887765432 2221 112367788888744322 23
Q ss_pred HHHHHHHHHHhcCCcEEEE
Q 025645 83 KLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGI 101 (250)
....++..+.+.++|+++-
T Consensus 227 ~~~~l~~~a~~~kiPli~s 245 (322)
T COG2984 227 AIESLLQVANKAKIPLIAS 245 (322)
T ss_pred HHHHHHHHHHHhCCCeecC
Confidence 4555677888889999864
No 321
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=45.52 E-value=61 Score=27.66 Aligned_cols=61 Identities=7% Similarity=0.025 Sum_probs=34.0
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC---C--CCCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF---N--DLHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~---~--~l~~~dglIi~Gg 70 (250)
...|+++..+...+++. .+...+.+.+++.|..+.+.....+..... . .-.++||+|+.+.
T Consensus 60 ~~~Igvi~~~~~~~~~~----~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 60 SRTIGLVIPDLENYSYA----RIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASC 125 (327)
T ss_pred CceEEEEeCCCCCccHH----HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 35699987654444322 233445677788898887654322110000 0 1146899999764
No 322
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=45.46 E-value=51 Score=26.98 Aligned_cols=58 Identities=9% Similarity=0.106 Sum_probs=32.4
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCC
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGS 70 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg 70 (250)
|+|+..+.+.+++.. +...+.+.+++.|.++.++....+...... .-.++||+|+.+.
T Consensus 2 I~vi~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (265)
T cd06291 2 IGLIVPTISNPFFSE----LARAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTH 64 (265)
T ss_pred EEEEECCCCChhHHH----HHHHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 788877666554332 334456778888888765532211100000 0146899999864
No 323
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=44.89 E-value=1.3e+02 Score=23.67 Aligned_cols=35 Identities=14% Similarity=-0.059 Sum_probs=22.8
Q ss_pred CcCEEEEcCCCCCCCCC--------ChhHHHHHHHHHHHHhcC
Q 025645 61 KYDGFVISGSPYDAYGN--------DNWILKLCFMLQTLDAMQ 95 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~--------~~~~~~~~~~i~~~~~~~ 95 (250)
++|.|||..|..+.... ..+...+.++++.+.+.+
T Consensus 65 ~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~ 107 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKG 107 (198)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence 68999999887665432 135556666776665543
No 324
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=44.83 E-value=44 Score=32.06 Aligned_cols=188 Identities=19% Similarity=0.259 Sum_probs=81.6
Q ss_pred ccceEEEEecC----------CCCh-hHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCC
Q 025645 5 EEKRYALFLAA----------KDSD-YVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYD 73 (250)
Q Consensus 5 ~~~riail~~~----------~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~ 73 (250)
.+.|||||++= ..+. ..+++| +|.+.+ ..|.-...+++.+... +......++++|-||=.|..++
T Consensus 434 ~~~kVAvLn~WGklRsW~~~~v~Hal~ykq~y-sy~Gil-EaLSGlp~dV~FISFd--Di~~~gi~~didViINaGdA~T 509 (716)
T PF09508_consen 434 CPFKVAVLNSWGKLRSWQCHMVAHALYYKQIY-SYIGIL-EALSGLPFDVEFISFD--DIRENGILEDIDVIINAGDAGT 509 (716)
T ss_dssp -SSEEEEEESSGGGGTTTTT-SSTT---TTTH-HHHHHH-HHHHTSSSEEEEEEHH--HHHHH-S-TT--EEEEEESTTS
T ss_pred ccceEEEeechhhhchhhhcccccccchhhhh-hHHHHH-HHhcCCCceeEEecHH--HHhhcCCcccCCEEEecCcccc
Confidence 35799999842 1111 112222 233422 3444344444444432 2111135678999999998888
Q ss_pred CCCCC-hhH-HHHHHHHHHHHhcCCcEEEEehH--HH------HHHHHcCceEEecCCCceee--EEEEEEecCCCCCCc
Q 025645 74 AYGND-NWI-LKLCFMLQTLDAMQKKVLGICFG--HQ------VLCRALGGKVGKAYTGWDIG--LRRVRIVNDLAPCSF 141 (250)
Q Consensus 74 ~~~~~-~~~-~~~~~~i~~~~~~~~PilGIC~G--~Q------lla~a~gg~v~~~~~~~~~g--~~~i~~~~~~~~~~l 141 (250)
++... .|. +.+...||++...|-=++||+== +| -|+..||-.-.. ++..+ .+..... ..+-+
T Consensus 510 A~SGG~~W~d~~iv~~lr~fV~~GGGfIGVGEPsA~~~~g~~FqLadVLGVDkE~---g~tl~~dky~~~~~---~~HFI 583 (716)
T PF09508_consen 510 AWSGGENWKDPKIVTALREFVYNGGGFIGVGEPSAHQGQGRFFQLADVLGVDKET---GFTLSTDKYNWEVE---PEHFI 583 (716)
T ss_dssp TTT-GGGGG-HHHHHHHHHHHHTT-EEEEEESTEEEEETTEEETTHHHHSEEE-----SS-TTB--B---------S-TT
T ss_pred cccCccccCCHHHHHHHHHHHHcCCCEEEcCCCccccCCCeEEeehhccCccccc---ccccccCcCCCcCC---CCcee
Confidence 77654 554 56788899999999988888621 11 144555532211 11121 1222222 12333
Q ss_pred ccccCCCCCceEEEeeecccccccCCccEEEEEcCCCceEEEE-ECC-c---EEEEecCCCCCHHHHHHH
Q 025645 142 LEDLGEIPGSLSIMECHRDEVWKVPIGAEVIGFSDKTGVEMFT-IGD-H---ILGIQGHPEYTKDILYNL 206 (250)
Q Consensus 142 ~~~~~~l~~~~~~~~~H~~~v~~lp~~~~~la~s~~~~v~~~~-~~~-~---~~g~QfHPE~~~~~~~~~ 206 (250)
..+ ++..+..-..-. .|..++...++|..++.....+.. ++. + +-|+++-||-++-+.+.+
T Consensus 584 ~~d---~~~~~dfGe~~~-~iy~~~~~t~vL~~~~~~v~la~n~yGkGR~VYlaGlpyS~~NtRlL~rai 649 (716)
T PF09508_consen 584 TED---IDGELDFGEGKK-NIYALSGDTEVLAQSDGEVQLAVNEYGKGRGVYLAGLPYSPENTRLLYRAI 649 (716)
T ss_dssp TTT---S---S---S--T-TEEESSTTSEEEE-GTTS-SEEEEEETTEEEEEES-----HHHHHHHHHHH
T ss_pred ecC---CCcCcccCCCcC-ceEEcCCCeEEeeecCCeEEEEecccCCccEEEeCCCCCCHHHHHHHHHHH
Confidence 333 332222222211 123467778999988665433333 333 4 347777777655555443
No 325
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=44.83 E-value=34 Score=27.97 Aligned_cols=78 Identities=10% Similarity=0.063 Sum_probs=41.4
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-------CCCCcCEEEEcCCCCCCCCCChhH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-------DLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-------~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
|+++......++... +...+.+.+++.|.++.+.... .+ +... .-.++||+|+.+ ..+
T Consensus 2 I~vv~~~~~~~~~~~----~~~~i~~~~~~~g~~v~~~~~~-~~-~~~~~~~~~~~~~~~~dgii~~~-~~~-------- 66 (268)
T cd06323 2 IGLSVSTLNNPFFVT----LKDGAQKEAKELGYELTVLDAQ-ND-AAKQLNDIEDLITRGVDAIIINP-TDS-------- 66 (268)
T ss_pred eeEecccccCHHHHH----HHHHHHHHHHHcCceEEecCCC-CC-HHHHHHHHHHHHHcCCCEEEEcC-CCh--------
Confidence 677765555544332 2334567777888777654321 11 1100 014689999964 211
Q ss_pred HHHHHHHHHHHhcCCcEEEE
Q 025645 82 LKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGI 101 (250)
....+.++.+.+.++|++-+
T Consensus 67 ~~~~~~l~~l~~~~ipvv~~ 86 (268)
T cd06323 67 DAVVPAVKAANEAGIPVFTI 86 (268)
T ss_pred HHHHHHHHHHHHCCCcEEEE
Confidence 11223455566678888766
No 326
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=44.74 E-value=62 Score=27.55 Aligned_cols=50 Identities=16% Similarity=0.038 Sum_probs=34.2
Q ss_pred EEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH--------------------HHHHHHHcCceEEe
Q 025645 64 GFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG--------------------HQVLCRALGGKVGK 118 (250)
Q Consensus 64 glIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G--------------------~Qlla~a~gg~v~~ 118 (250)
.|+++.|..+.. ...+.++++.+.+.+++|..|.+| ++-||..-||+...
T Consensus 168 iIllTDG~~~~~-----~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~ 237 (296)
T TIGR03436 168 LIVISDGGDNRS-----RDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFY 237 (296)
T ss_pred EEEEecCCCcch-----HHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEec
Confidence 566666643221 234556677777889999999986 66778888888654
No 327
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.70 E-value=47 Score=27.30 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=32.4
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCC
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGS 70 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg 70 (250)
|||+..+..+++... +..-+.+.+++.|.++.+.....+...... .-.++||+|+.+.
T Consensus 2 Ig~i~~~~~~~~~~~----~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 2 IGLVVPDIANPFFAE----LADAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred EEEEeCCCCCCcHHH----HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 788875544444322 233456778888988876643321100000 0246999999864
No 328
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=44.70 E-value=47 Score=30.60 Aligned_cols=92 Identities=22% Similarity=0.195 Sum_probs=46.6
Q ss_pred ceEEEEecCCCChh---HHHhhCCHHHHHHHHHhcCCCceEE--EEeec--CCCCCCCCCCCcCEEEEcCCCCCCCCC--
Q 025645 7 KRYALFLAAKDSDY---VLKVYGGYFNVFVAAFGEEGERWDL--FRVVE--GDFPDFNDLHKYDGFVISGSPYDAYGN-- 77 (250)
Q Consensus 7 ~riail~~~~~~~~---~~~~~~~~~~~~~~~l~~~g~~~~~--~~~~~--~~~~~~~~l~~~dglIi~Gg~~~~~~~-- 77 (250)
||.+|++--.|.|. +..--+-|..-.+-+|.++|.++++ +.++. ......+.+.++|.+|+-||-..+...
T Consensus 1 m~~~IiDGY~DEPAglGVPPYi~~YpRY~aGAl~~~g~~~~v~Y~tID~lR~~~~~~~~l~k~d~~V~I~G~~vPGKYlg 80 (560)
T COG1031 1 MRAAIIDGYTDEPAGLGVPPYIGPYPRYAAGALKKAGKDVEVDYVTIDRLRENFKTLEILNKYDLVVFIAGVTVPGKYLG 80 (560)
T ss_pred CceeeeccccCCcccCCCCCcccccHHHHHHHHHHcCCCceeEEEEHHHhhccchhhhhhhcCCEEEEEeccccCccccC
Confidence 46778763333321 1111123444455678888755543 33321 112234558899999999986544322
Q ss_pred -Chh-HHHHHHHHHHHHhcCCcEEE
Q 025645 78 -DNW-ILKLCFMLQTLDAMQKKVLG 100 (250)
Q Consensus 78 -~~~-~~~~~~~i~~~~~~~~PilG 100 (250)
.|- ...+..++.. ..++.|||
T Consensus 81 a~P~tl~E~~~i~~~--~~gvkilG 103 (560)
T COG1031 81 ATPATLEELLRILSI--ADGVKILG 103 (560)
T ss_pred CCCCCHHHHHHHHHH--hcCcEEec
Confidence 221 2233333322 24678887
No 329
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=44.40 E-value=62 Score=25.07 Aligned_cols=89 Identities=16% Similarity=0.108 Sum_probs=46.0
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCC---CceEEEEeec-CCCCCC----CCCCCcCEEEEcCCC--CCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEG---ERWDLFRVVE-GDFPDF----NDLHKYDGFVISGSP--YDA 74 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~-~~~~~~----~~l~~~dglIi~Gg~--~~~ 74 (250)
...||+|+...-..+-... ..+...+.|.+.| ..+.++++.. -+.|-. ..-.+|||+|..|-- +..
T Consensus 11 ~~~riaIV~s~~n~~i~~~----l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavIalG~VIrG~T 86 (154)
T PRK00061 11 KGLRIGIVVARFNDFITDA----LLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAESGKYDAVIALGAVIRGET 86 (154)
T ss_pred CCCEEEEEEecCcHHHHHH----HHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHHcCCCCEEEEEeeEEcCCC
Confidence 4569999986654432111 1122345677778 4566666432 122210 011469999999853 111
Q ss_pred CCCChhH--HHHHHHHHHHHhcCCcE
Q 025645 75 YGNDNWI--LKLCFMLQTLDAMQKKV 98 (250)
Q Consensus 75 ~~~~~~~--~~~~~~i~~~~~~~~Pi 98 (250)
+ ...++ .-...+++-.++.++||
T Consensus 87 ~-H~e~V~~~v~~gl~~v~l~~~~PV 111 (154)
T PRK00061 87 P-HFDYVANEVAKGLADVSLETGVPV 111 (154)
T ss_pred c-hHHHHHHHHHHHHHHHHhccCCCE
Confidence 1 11222 12344566667788995
No 330
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=43.70 E-value=1.7e+02 Score=24.27 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=38.3
Q ss_pred HHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 32 FVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
|...|...|..+..+............+..-|.+|+.--.+. .....+.++.+.+.+.|+++||-.
T Consensus 18 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~-------t~~~~~~~~~a~~~g~~ii~iT~~ 83 (268)
T TIGR00393 18 IVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGE-------SLELLNLIPHLKRLSHKIIAFTGS 83 (268)
T ss_pred HHHHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCC-------CHHHHHHHHHHHHcCCcEEEEECC
Confidence 555666778776544321111111122334455555532221 256778889999999999999964
No 331
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=43.37 E-value=23 Score=30.28 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=26.8
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHH
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQ 106 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q 106 (250)
.+++|.+|.-||-+ .++...+.+...++||+||=.|.-
T Consensus 74 ~~~~D~ii~lGGDG----------T~L~~~~~~~~~~~Pilgin~G~l 111 (285)
T PF01513_consen 74 EEGVDLIIVLGGDG----------TFLRAARLFGDYDIPILGINTGTL 111 (285)
T ss_dssp CCCSSEEEEEESHH----------HHHHHHHHCTTST-EEEEEESSSS
T ss_pred ccCCCEEEEECCCH----------HHHHHHHHhccCCCcEEeecCCCc
Confidence 36799999999932 344555555556899999998863
No 332
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.16 E-value=63 Score=26.50 Aligned_cols=57 Identities=18% Similarity=0.012 Sum_probs=28.5
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhc-CCCceEEEEeecCCCCCCCCCCCcCEEEEcC
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGE-EGERWDLFRVVEGDFPDFNDLHKYDGFVISG 69 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~l~~~dglIi~G 69 (250)
|||+++.. ..++.. .+..-+.+.+++ .|..+........+....-.-.++||+|+.+
T Consensus 1 ~ig~i~~~-~~~~~~----~~~~gi~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~vdGiI~~~ 58 (265)
T cd01543 1 RVALLVET-SSSYGR----GVLRGIARYAREHGPWSIYLEPRGLQEPLRWLKDWQGDGIIARI 58 (265)
T ss_pred CeEEEecc-cchhhH----HHHHHHHHHHHhcCCeEEEEecccchhhhhhccccccceEEEEC
Confidence 68888753 233322 233445667777 6666554321110111110114689999974
No 333
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=42.95 E-value=22 Score=31.00 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCc-----------eEEEEECCcEEEEecCCCC
Q 025645 166 PIGAEVIGFSDKTG-----------VEMFTIGDHILGIQGHPEY 198 (250)
Q Consensus 166 p~~~~~la~s~~~~-----------v~~~~~~~~~~g~QfHPE~ 198 (250)
+.|=.+|..|.+.. ..-++...++|+.||||--
T Consensus 75 ~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k 118 (405)
T KOG1273|consen 75 RDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRK 118 (405)
T ss_pred CCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeecccc
Confidence 45555555555533 3445667799999999973
No 334
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=42.84 E-value=91 Score=23.80 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=51.9
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCc---eEEEEeec-CCCCCC----CCCCCcCEEEEcCCCCCC-C
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGER---WDLFRVVE-GDFPDF----NDLHKYDGFVISGSPYDA-Y 75 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---~~~~~~~~-~~~~~~----~~l~~~dglIi~Gg~~~~-~ 75 (250)
+..||+|+...-..+-... ..+-..+.|.+.|.+ ++++++.. -+.|.. ..-.+||++|..|---.- .
T Consensus 6 ~~~ri~IV~s~fn~~I~~~----Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT 81 (141)
T PLN02404 6 EGLRFGVVVARFNEIITKN----LLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDT 81 (141)
T ss_pred CCCEEEEEEecCcHHHHHH----HHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCC
Confidence 4579999986654432111 111223567777875 56665532 122210 011469999999842110 0
Q ss_pred CCChhHH--HHHHHHHHHHhcCCcE-EEE---ehHHHHHHHH
Q 025645 76 GNDNWIL--KLCFMLQTLDAMQKKV-LGI---CFGHQVLCRA 111 (250)
Q Consensus 76 ~~~~~~~--~~~~~i~~~~~~~~Pi-lGI---C~G~Qlla~a 111 (250)
....++. -...+.+-.++.++|| +|| =-=.|.+.++
T Consensus 82 ~H~e~V~~~v~~gl~~vsl~~~~PV~~GVLt~~~~eQA~~Ra 123 (141)
T PLN02404 82 THYDAVANSAASGVLSAGLNSGVPCIFGVLTCDDMEQALNRA 123 (141)
T ss_pred chhHHHHHHHHHHHHHHHhccCCCEEEEEcCCCCHHHHHHHh
Confidence 1112222 2345556667788995 343 2334555555
No 335
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.79 E-value=62 Score=26.49 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=40.2
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-C-----CCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-N-----DLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~-----~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
|+|+..+...+++.. +...+.+.+++.|..+.+.... .+.... + .-..+||+|+.+...+ .
T Consensus 2 igvi~p~~~~~~~~~----~~~gi~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~dgiii~~~~~~----~---- 68 (265)
T cd06285 2 IGVLVPRLTDTVMAT----MYEGIEEAAAERGYSTFVANTG-DNPDAQRRAIEMLLDRRVDGLILGDARSD----D---- 68 (265)
T ss_pred EEEEeCCCCCccHHH----HHHHHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEecCCCC----h----
Confidence 677776555554332 2344567788888887544321 111000 0 1247899999753211 1
Q ss_pred HHHHHHHHHHhcCCcEE
Q 025645 83 KLCFMLQTLDAMQKKVL 99 (250)
Q Consensus 83 ~~~~~i~~~~~~~~Pil 99 (250)
. .++.+.+.++|+.
T Consensus 69 ~---~~~~~~~~~iPvv 82 (265)
T cd06285 69 H---FLDELTRRGVPFV 82 (265)
T ss_pred H---HHHHHHHcCCCEE
Confidence 1 2455556678873
No 336
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=42.37 E-value=1.5e+02 Score=25.86 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=26.0
Q ss_pred CCcCEEEEcCCCCCCCC--CChhHHHHHHHHHHHH-hcCCcEEEEeh
Q 025645 60 HKYDGFVISGSPYDAYG--NDNWILKLCFMLQTLD-AMQKKVLGICF 103 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~--~~~~~~~~~~~i~~~~-~~~~PilGIC~ 103 (250)
...-|++.+.......+ +..|.....+.+.... ...-|-.|||+
T Consensus 50 ~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l~~l~rs~~a~~aGV~l 96 (342)
T KOG3923|consen 50 DVAAGLFRPDLSDGTPQEINRQWGKDTFNYLAHLARSEEAGEAGVCL 96 (342)
T ss_pred ccccceeecccCCCCcHHHHHHHHHHHHHHHHHHhccccccccceEE
Confidence 34677887764333222 2356655555554443 35789999997
No 337
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=42.30 E-value=1.1e+02 Score=25.64 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCceEEEEeecCCC--C-CCCCCCCcCEEEEcC
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDF--P-DFNDLHKYDGFVISG 69 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~--~-~~~~l~~~dglIi~G 69 (250)
..+.+.|++.|++++.+.+..... . ...++.++|.+++-.
T Consensus 13 ~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~ 55 (280)
T TIGR02144 13 KMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRC 55 (280)
T ss_pred HHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcC
Confidence 557789999999998765443211 1 112456789988853
No 338
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=42.10 E-value=39 Score=27.34 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=24.2
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
...+|.||+.+-. .....++++...++|+.|||
T Consensus 106 ~~~Pdlliv~dp~-----------~~~~Av~EA~~l~IP~Iai~ 138 (196)
T TIGR01012 106 FREPEVVVVTDPR-----------ADHQALKEASEVGIPIVALC 138 (196)
T ss_pred cCCCCEEEEECCc-----------cccHHHHHHHHcCCCEEEEe
Confidence 3457889997422 12346788888999999999
No 339
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=41.95 E-value=1.3e+02 Score=21.71 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEeh
Q 025645 82 LKLCFMLQTLDAMQKKVLGICF 103 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGIC~ 103 (250)
....+.++.+.+.+.|+++|+-
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~ 82 (120)
T cd05710 61 KETVAAAKFAKEKGATVIGLTD 82 (120)
T ss_pred hHHHHHHHHHHHcCCeEEEEEC
Confidence 4667788888889999999984
No 340
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=41.82 E-value=1.1e+02 Score=24.69 Aligned_cols=43 Identities=16% Similarity=0.006 Sum_probs=22.2
Q ss_pred cCEEEEcCCCCC---CCCCChhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 62 YDGFVISGSPYD---AYGNDNWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 62 ~dglIi~Gg~~~---~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
.|.+|+.||... ......+. ........+...++|++-++.|.
T Consensus 64 ~~~vii~GGg~~~~~~~~~~~~~-~~~~~~~~~~~~~~pv~~~g~g~ 109 (286)
T PF04230_consen 64 ADDVIIGGGGGSDNNFIDLWSLP-IFLRWLFLAKKLGKPVIILGQGI 109 (286)
T ss_pred CCeEEEECCcccccCCCcchhhH-HHHHHHHHHHhcCCCeEEECceE
Confidence 466888877421 11111222 23444555666788865555554
No 341
>PRK11914 diacylglycerol kinase; Reviewed
Probab=41.80 E-value=74 Score=27.29 Aligned_cols=66 Identities=11% Similarity=-0.029 Sum_probs=34.3
Q ss_pred cccceEEEEecCC-CChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC-CCC---CCCCCCCcCEEEEcCCCCC
Q 025645 4 MEEKRYALFLAAK-DSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG-DFP---DFNDLHKYDGFVISGSPYD 73 (250)
Q Consensus 4 ~~~~riail~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~---~~~~l~~~dglIi~Gg~~~ 73 (250)
|+.+|+.+|.... ....... ....+.+.|++.|.++.++..... +.. ......++|.||+.||-+.
T Consensus 6 ~~~~~~~iI~NP~sG~g~~~~----~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGT 76 (306)
T PRK11914 6 HEIGKVTVLTNPLSGHGAAPH----AAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGV 76 (306)
T ss_pred CCCceEEEEECCCCCCCcHHH----HHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchH
Confidence 4446777765322 2211111 112356788888988776543221 100 0011246799999999554
No 342
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=41.69 E-value=1.7e+02 Score=23.64 Aligned_cols=80 Identities=20% Similarity=0.066 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCCceEEEEeecCCC-CCC------CCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHH-H--HhcCCcEE
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDF-PDF------NDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQT-L--DAMQKKVL 99 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~-~~~------~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~-~--~~~~~Pil 99 (250)
+.+.+.|++.|.++..+.+..... +.. ..+.++|.||++-+.+ + ..+.+.++. . .-.+.+++
T Consensus 14 ~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~a-v-------~~~~~~~~~~~~~~~~~~~~~ 85 (249)
T PRK05928 14 EELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNA-V-------EFLLSALKKKKLKWPKNKKYA 85 (249)
T ss_pred HHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHH-H-------HHHHHHHHhcCcCCCCCCEEE
Confidence 346789999999887655443221 111 3467899999995421 1 122222220 0 01245666
Q ss_pred EEehHHHHHHHHcCceEE
Q 025645 100 GICFGHQVLCRALGGKVG 117 (250)
Q Consensus 100 GIC~G~Qlla~a~gg~v~ 117 (250)
.|.-.-.-..+.+|.++.
T Consensus 86 avG~~Ta~~l~~~G~~~~ 103 (249)
T PRK05928 86 AIGEKTALALKKLGGKVV 103 (249)
T ss_pred EECHHHHHHHHHcCCCcc
Confidence 665555555556676543
No 343
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.59 E-value=64 Score=26.35 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=36.1
Q ss_pred cEEEEecCC-C----CCHHHHHHHHHHHhcCCCccHHHHHHHHhhccccCCcH
Q 025645 188 HILGIQGHP-E----YTKDILYNLIDRLLNNNSIEREFAENAKFGLEIAEPDR 235 (250)
Q Consensus 188 ~~~g~QfHP-E----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (250)
|-.++|||| + ++..+++..+...+..+.+.+.........+.....|.
T Consensus 94 pq~~~~~~p~~~~d~~s~~ll~AmIaAAkaDGhIDe~ERa~I~~~l~esG~d~ 146 (225)
T COG2979 94 PQADSQFTPLATEDEFSLTLLRAMIAAAKADGHIDEKERARIMQKLQESGVDP 146 (225)
T ss_pred CcccCCCCCccccchHHHHHHHHHHHHHhhcCCcCHHHHHHHHHHHHHcCCCH
Confidence 457889999 3 56778888888888899998887777776666655553
No 344
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=41.11 E-value=2.5e+02 Score=24.58 Aligned_cols=44 Identities=5% Similarity=-0.008 Sum_probs=28.8
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeec
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVE 50 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 50 (250)
+++|||||--+...+.-...-+ .....+.|.+.+.++..+.+..
T Consensus 2 ~~~~i~vl~GG~S~E~evSl~s--~~~v~~~l~~~~~~v~~i~i~~ 45 (343)
T PRK14568 2 NRIKVGILFGGCSEEHPVSVKS--AIEVARNLDTEKYEPFYIGITK 45 (343)
T ss_pred CCcEEEEEECCCCCchHHHHHh--HHHHHHhhcccCCeEEEEEECC
Confidence 4579999986665554332211 2345678888899888776654
No 345
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=40.99 E-value=1.6e+02 Score=22.86 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=46.3
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceE---EEEeec-CCCCC----CCCCCCcCEEEEcCCC--CCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWD---LFRVVE-GDFPD----FNDLHKYDGFVISGSP--YDA 74 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~-~~~~~----~~~l~~~dglIi~Gg~--~~~ 74 (250)
+..||+|+...-.. .+.+. ...-..+.+.+.|...+ ++++.. -+.|- ...-.+||+||-.|-- ++.
T Consensus 11 ~~~riaIV~arfn~-~I~d~---ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T 86 (152)
T COG0054 11 KGLRIAIVVARFND-DITDA---LLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGET 86 (152)
T ss_pred CCceEEEEEeehhH-HHHHH---HHHHHHHHHHHcCCCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCC
Confidence 45799999754322 21111 11122456666776654 665532 23331 1112569999988742 111
Q ss_pred CCCChhH--HHHHHHHHHHHhcCCcEE
Q 025645 75 YGNDNWI--LKLCFMLQTLDAMQKKVL 99 (250)
Q Consensus 75 ~~~~~~~--~~~~~~i~~~~~~~~Pil 99 (250)
+ ...++ .-...+.+-.++.++||.
T Consensus 87 ~-Hfd~Va~~~~~gl~~vsl~~~~PV~ 112 (152)
T COG0054 87 Y-HFDYVANEVARGLMDVSLETGVPVT 112 (152)
T ss_pred c-cHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 1 11222 223556677788899964
No 346
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=40.91 E-value=1.3e+02 Score=21.50 Aligned_cols=64 Identities=8% Similarity=-0.088 Sum_probs=35.7
Q ss_pred HHHHHhcCC-CceEEEEeecCCCC-CCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 32 FVAAFGEEG-ERWDLFRVVEGDFP-DFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 32 ~~~~l~~~g-~~~~~~~~~~~~~~-~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
+...|...+ ..+..+. ..+.. ....+..-|.+|+..-.+.. ....+.++.+.+.+.|+++|+-.
T Consensus 17 ~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~I~iS~sG~t-------~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 17 AKYLLERLAGIPVEVEA--ASEFRYRRPLLDEDTLVIAISQSGET-------ADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred HHHHHHHhcCCceEEEe--hhHhhhcCCCCCCCcEEEEEeCCcCC-------HHHHHHHHHHHHcCCeEEEEECC
Confidence 455666655 6665544 11111 11123344555554322221 45677888888999999999964
No 347
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=40.74 E-value=51 Score=28.78 Aligned_cols=65 Identities=9% Similarity=0.097 Sum_probs=39.0
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC----CCC--CCCcCEEEEcCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD----FND--LHKYDGFVISGSPY 72 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~----~~~--l~~~dglIi~Gg~~ 72 (250)
.+++||..++.... -..+..-..++..+|++.|.++..+.+.+++... ... .+++|.||.+||-+
T Consensus 156 ~~~aIltvsde~~~-G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg 226 (312)
T PRK03604 156 TSAAVLVLSDSIAA-GTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTG 226 (312)
T ss_pred cEEEEEEECCcCCC-CcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCC
Confidence 36778876543210 1122233456788999999988777665543210 001 24689999999854
No 348
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=40.66 E-value=1.3e+02 Score=25.05 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=33.2
Q ss_pred eEEEEecCCC-ChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-C-CCC--C---C--CCCcCEEEEcCC
Q 025645 8 RYALFLAAKD-SDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-F-PDF--N---D--LHKYDGFVISGS 70 (250)
Q Consensus 8 riail~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~-~~~--~---~--l~~~dglIi~Gg 70 (250)
||+|+..+.. .+++. .....+.+.+++.|..+.+....... . +.. . . -.++||||+.+.
T Consensus 1 ~Igvi~~~~~~~~~~~----~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~ 69 (280)
T cd06303 1 KIAVIYPGQQISDYWV----RNIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLD 69 (280)
T ss_pred CeeEEecCccHHHHHH----HHHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 5888876542 34432 23345677888889887765332211 0 000 0 0 147899999864
No 349
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.55 E-value=1.9e+02 Score=26.28 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=21.6
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEe
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRV 48 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 48 (250)
|+ +..++|+|+..+. . .-..+++|.+.|..+..+..
T Consensus 1 ~~-~~~~~~~v~G~g~-~----------G~~~a~~l~~~g~~v~~~d~ 36 (445)
T PRK04308 1 MT-FQNKKILVAGLGG-T----------GISMIAYLRKNGAEVAAYDA 36 (445)
T ss_pred CC-CCCCEEEEECCCH-H----------HHHHHHHHHHCCCEEEEEeC
Confidence 44 3356788876541 1 12236788888887766553
No 350
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=40.34 E-value=1.2e+02 Score=26.40 Aligned_cols=85 Identities=18% Similarity=0.062 Sum_probs=45.3
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC----C--CCCCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF----N--DLHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~----~--~l~~~dglIi~Gg~~~~~~~~~ 79 (250)
.+|++++..+..... +....+...+++.|.++......+....+. . .-.++|+|++.+...+
T Consensus 133 ~k~vaii~~d~~~g~------~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~~~pd~v~~~~~~~~------ 200 (348)
T cd06355 133 GKRFYLVGSDYVYPR------TANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAAKPDVVVSTVNGDS------ 200 (348)
T ss_pred CCeEEEECCcchHHH------HHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHHhCCCEEEEeccCCc------
Confidence 468999865543221 123456678888898876433222111110 0 1146899988754322
Q ss_pred hHHHHHHHHHHHHhcC-----CcEEEEehHHH
Q 025645 80 WILKLCFMLQTLDAMQ-----KKVLGICFGHQ 106 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~-----~PilGIC~G~Q 106 (250)
...+++++.+.+ +|+++-+.+-+
T Consensus 201 ----~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 228 (348)
T cd06355 201 ----NVAFFKQLKAAGITASKVPVLSFSVAEE 228 (348)
T ss_pred ----hHHHHHHHHHcCCCccCCeeEEccccHH
Confidence 233556665554 36777654433
No 351
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.28 E-value=1e+02 Score=23.96 Aligned_cols=69 Identities=17% Similarity=0.101 Sum_probs=33.9
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC-CCC------------CCCCCCCcCEEEEcCCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG-DFP------------DFNDLHKYDGFVISGSPY 72 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~------------~~~~l~~~dglIi~Gg~~ 72 (250)
++||++|.++.....-......|...+.+.+.+.+..+.++...-+ ... ......++|.|+|.-|..
T Consensus 1 ~~~i~~lGDSit~G~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gi~G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~N 80 (193)
T cd01835 1 PKRLIVVGDSLVYGWGDPEGGGWVGRLRARWMNLGDDPVLYNLGVRGDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLN 80 (193)
T ss_pred CcEEEEEcCccccCCCCCCCCChHHHHHHHhhccCCCeeEEeecCCCCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCc
Confidence 4678888754332211112345666666555444445554443211 110 000124689999996655
Q ss_pred CC
Q 025645 73 DA 74 (250)
Q Consensus 73 ~~ 74 (250)
+.
T Consensus 81 D~ 82 (193)
T cd01835 81 DT 82 (193)
T ss_pred cc
Confidence 54
No 352
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=39.96 E-value=1.8e+02 Score=24.93 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=41.5
Q ss_pred HHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH-HHHHHH
Q 025645 32 FVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG-HQVLCR 110 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G-~Qlla~ 110 (250)
+...|...|..+..+............+..-|.+|+.-..+.. ....+.++.+.+.+.|+++|+-. .--|+.
T Consensus 60 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t-------~~~~~~~~~ak~~g~~vI~iT~~~~s~la~ 132 (321)
T PRK11543 60 IAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGA-------KELDLIIPRLEDKSIALLAMTGKPTSPLGL 132 (321)
T ss_pred HHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCc-------HHHHHHHHHHHHcCCeEEEEECCCCChhHH
Confidence 4566777888766553211101111223334555554322222 46778889999999999999973 334444
Q ss_pred H
Q 025645 111 A 111 (250)
Q Consensus 111 a 111 (250)
.
T Consensus 133 ~ 133 (321)
T PRK11543 133 A 133 (321)
T ss_pred h
Confidence 4
No 353
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=39.61 E-value=59 Score=24.43 Aligned_cols=68 Identities=28% Similarity=0.336 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHH--hcCCcEEEEehH
Q 025645 29 FNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLD--AMQKKVLGICFG 104 (250)
Q Consensus 29 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~--~~~~PilGIC~G 104 (250)
...+++.|.+.+..+++..+. ....++.++|.||+.++-.. .. +...+.++++... -.++|+.-+|-|
T Consensus 15 A~~ia~~l~~~~~~v~~~~~~----~~~~~~~~yD~vi~gspiy~--g~--~~~~~~~fi~~~~~~l~~k~v~~f~~~ 84 (143)
T PF12724_consen 15 AEWIAEKLGEEGELVDLEKVE----EDEPDLSDYDAVIFGSPIYA--GR--IPGEMREFIKKNKDNLKNKKVALFSVG 84 (143)
T ss_pred HHHHHHHHhhhccEEEHHhhh----hcccccccCCEEEEEEEEEC--Cc--CCHHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 345556665554444333211 12346789999998865322 11 1233455555432 246776555443
No 354
>PRK05568 flavodoxin; Provisional
Probab=39.33 E-value=1.6e+02 Score=21.79 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCC
Q 025645 31 VFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGS 70 (250)
Q Consensus 31 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg 70 (250)
.+.+.+++.|.+++++.+...+ ..++.++|+||+.-.
T Consensus 21 ~i~~~~~~~g~~v~~~~~~~~~---~~~~~~~d~iilgsp 57 (142)
T PRK05568 21 LIAEGAKENGAEVKLLNVSEAS---VDDVKGADVVALGSP 57 (142)
T ss_pred HHHHHHHHCCCeEEEEECCCCC---HHHHHhCCEEEEECC
Confidence 3455666778888887654332 235778998887643
No 355
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=39.20 E-value=85 Score=23.84 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=44.0
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCc---eEEEEeec-CCCCCC----CCCCCcCEEEEcCCC--CCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGER---WDLFRVVE-GDFPDF----NDLHKYDGFVISGSP--YDAYG 76 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---~~~~~~~~-~~~~~~----~~l~~~dglIi~Gg~--~~~~~ 76 (250)
+||+|+...-..+-... ..+-..+.|.+.|.. +.++++.. -+.|-. ..-.+|||+|..|-- +..+
T Consensus 1 ~ri~IV~s~~n~~i~~~----L~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavI~LG~VIrG~T~- 75 (138)
T TIGR00114 1 VRVGIVIARFNRDITDM----LLKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAETGKYDAVIALGCVIRGGTP- 75 (138)
T ss_pred CEEEEEEecCCHHHHHH----HHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEeeEEeCCCc-
Confidence 48999976544332111 112234567777875 34555432 122210 011469999999843 1111
Q ss_pred CChhH--HHHHHHHHHHHhcCCcE
Q 025645 77 NDNWI--LKLCFMLQTLDAMQKKV 98 (250)
Q Consensus 77 ~~~~~--~~~~~~i~~~~~~~~Pi 98 (250)
...++ .-...+++-.++.++||
T Consensus 76 H~e~v~~~v~~gl~~~sl~~~~PV 99 (138)
T TIGR00114 76 HFEYVADEAAKGIADLALDYDKPV 99 (138)
T ss_pred hhHHHHHHHHHHHHHHHhhhCCCE
Confidence 11222 22345556667778985
No 356
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=39.19 E-value=66 Score=22.05 Aligned_cols=20 Identities=10% Similarity=0.291 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhcCCcEEEE
Q 025645 82 LKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGI 101 (250)
....+.++.+.+.++|++||
T Consensus 40 ~dv~r~~~~~~~~~vpilGv 59 (81)
T PF10609_consen 40 ADVRRAIDMFRKLNVPILGV 59 (81)
T ss_dssp HHHHHHHHHHHCTT-EEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEE
Confidence 55677778888899999997
No 357
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=38.89 E-value=50 Score=28.86 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=35.6
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISG 69 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~G 69 (250)
.-|+++..+...++ |..+..-+.+.+++.|..+.+.....+.... .-.-..+||||+.|
T Consensus 59 ~~Ig~i~p~~~~~~----~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 59 KTIGLVVPDITNPF----FAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CEEEEEeCCCCCch----HHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 45888876555543 2234455677888899998877543311000 00124799999998
No 358
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=38.89 E-value=25 Score=23.38 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=14.0
Q ss_pred cCCcEEEEehHHHHHHHHcCc
Q 025645 94 MQKKVLGICFGHQVLCRALGG 114 (250)
Q Consensus 94 ~~~PilGIC~G~Qlla~a~gg 114 (250)
.++-|.|+|.| ||+++|-
T Consensus 10 ~nr~iaGVcgG---la~yf~i 27 (70)
T COG1983 10 KNRMIAGVCGG---LAEYFGI 27 (70)
T ss_pred cCCEeeeeehh---HHHHhCC
Confidence 46889999999 6776653
No 359
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=38.36 E-value=1.2e+02 Score=21.74 Aligned_cols=82 Identities=11% Similarity=-0.004 Sum_probs=42.1
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
.||.++.++... . ....+...|...|..+..+.-..........+..-|.+|+-.-.+.. ....+
T Consensus 14 ~~i~i~g~g~s~-~-------~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~-------~~~~~ 78 (139)
T cd05013 14 RRIYIFGVGSSG-L-------VAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGET-------KETVE 78 (139)
T ss_pred CEEEEEEcCchH-H-------HHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCC-------HHHHH
Confidence 567777666522 1 22345667777777655442111000000012223445444322221 35667
Q ss_pred HHHHHHhcCCcEEEEeh
Q 025645 87 MLQTLDAMQKKVLGICF 103 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~ 103 (250)
.++.+.+.+.++++|+-
T Consensus 79 ~~~~a~~~g~~iv~iT~ 95 (139)
T cd05013 79 AAEIAKERGAKVIAITD 95 (139)
T ss_pred HHHHHHHcCCeEEEEcC
Confidence 77888888999999874
No 360
>PRK05839 hypothetical protein; Provisional
Probab=38.27 E-value=2.5e+02 Score=24.66 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=39.2
Q ss_pred HHHHHhcCCCceEEEEeecC-CC-CCC--CCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEE
Q 025645 32 FVAAFGEEGERWDLFRVVEG-DF-PDF--NDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVL 99 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~-~~-~~~--~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pil 99 (250)
+...+...|.++..+..... .+ ++. ..+++.+.|+++ .|.++....--...+.++++.+.+.+++|+
T Consensus 122 ~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~k~v~i~-nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii 192 (374)
T PRK05839 122 YEGAAIASRAKVLLMPLTKENDFTPSLNEKELQEVDLVILN-SPNNPTGRTLSLEELIEWVKLALKHDFILI 192 (374)
T ss_pred hHHHHHhcCCEEEEeecccccCCcCCcchhhhccccEEEEe-CCCCCcCcccCHHHHHHHHHHHHHcCCEEE
Confidence 34556677888887765422 11 111 123567888887 777765543223456667777766666554
No 361
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=38.19 E-value=2.2e+02 Score=23.60 Aligned_cols=88 Identities=17% Similarity=0.176 Sum_probs=52.6
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC--------CCCCcCEEEEcCCCCCCCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN--------DLHKYDGFVISGSPYDAYGN 77 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~--------~l~~~dglIi~Gg~~~~~~~ 77 (250)
.+||.++..+...+ .+.+.|...|+++..+.++....+... ....+|.|+++-+.
T Consensus 123 ~~~vl~~~~~~~r~-----------~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~------ 185 (248)
T COG1587 123 GKRVLILRGNGGRE-----------VLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSS------ 185 (248)
T ss_pred CCeEEEEcCCCchH-----------HHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHH------
Confidence 35788876555442 367889999999988887765543322 24678999999552
Q ss_pred ChhHHHHHHHHHHHHhcCCc----EEEEehHHHHHHHH--cCce
Q 025645 78 DNWILKLCFMLQTLDAMQKK----VLGICFGHQVLCRA--LGGK 115 (250)
Q Consensus 78 ~~~~~~~~~~i~~~~~~~~P----ilGIC~G~Qlla~a--~gg~ 115 (250)
....++..+.....+ .--+|.|-+....+ +|.+
T Consensus 186 -----~v~~~~~~~~~~~~~~~~~~~v~~IG~~Ta~~l~~~G~~ 224 (248)
T COG1587 186 -----AVRALLALAPESGIEFLERKRVASIGPRTAETLKELGIT 224 (248)
T ss_pred -----HHHHHHHHccccchhHhhCceEEEecHHHHHHHHHcCCc
Confidence 222333333332222 44567777765543 4443
No 362
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=38.07 E-value=73 Score=27.29 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=31.6
Q ss_pred EEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 64 GFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 64 glIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
||+.+||+.... -..+..+++.+...+..++|+..|+.-|...
T Consensus 4 ~Il~sGG~apG~-----Na~i~~~v~~a~~~g~~v~g~~~G~~GL~~~ 46 (282)
T PF00365_consen 4 AILTSGGDAPGM-----NAAIRGVVRYAIRRGWEVYGIRNGFEGLLNG 46 (282)
T ss_dssp EEEEESS--TTH-----HHHHHHHHHHHHHTTSEEEEETTHHHHHHHC
T ss_pred EEEecCCCchhh-----hHHHHHHHHHHHhcCCEEEEEEccCccceee
Confidence 577788866542 2456677788888899999999999988763
No 363
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=37.72 E-value=1.4e+02 Score=20.84 Aligned_cols=59 Identities=8% Similarity=-0.025 Sum_probs=35.1
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC---CCCCCCCcCEEEEcCCC
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP---DFNDLHKYDGFVISGSP 71 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~---~~~~l~~~dglIi~Gg~ 71 (250)
++|..|+...-.-.- -...+.+++++.|.++.+..-...... +.+++...|.||+.|..
T Consensus 2 ~~i~ac~~G~a~s~l----aa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~ 63 (96)
T cd05569 2 VAVTACPTGIAHTYM----AAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADV 63 (96)
T ss_pred EEEEECCCchhHHHH----HHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCC
Confidence 456667766432110 114577889999998776533322111 12457789999999864
No 364
>PRK13054 lipid kinase; Reviewed
Probab=37.72 E-value=96 Score=26.56 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=24.8
Q ss_pred HHHHHhcCCCceEEEEeec-CCCCC---CCCCCCcCEEEEcCCCCC
Q 025645 32 FVAAFGEEGERWDLFRVVE-GDFPD---FNDLHKYDGFVISGSPYD 73 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~-~~~~~---~~~l~~~dglIi~Gg~~~ 73 (250)
+.+.|++.|.+++++.... ++... .....++|.||+.||-+.
T Consensus 23 ~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGT 68 (300)
T PRK13054 23 AVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGT 68 (300)
T ss_pred HHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccH
Confidence 4567888998877654322 11100 011246899999999554
No 365
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=37.37 E-value=11 Score=28.57 Aligned_cols=45 Identities=18% Similarity=0.103 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCCC
Q 025645 29 FNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPYD 73 (250)
Q Consensus 29 ~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~~ 73 (250)
...+.++|++.|.++..+.+.+++... ...+++.|.||.+||-+-
T Consensus 19 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~ 68 (144)
T PF00994_consen 19 GPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGP 68 (144)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSS
T ss_pred HHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCc
Confidence 356778999999988766655543211 011356799999998653
No 366
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=37.32 E-value=1.9e+02 Score=22.13 Aligned_cols=95 Identities=13% Similarity=0.081 Sum_probs=49.9
Q ss_pred cceEEEEecCCCChhHHH-hhC-CHHHHHHHHHhc---CCCceEEEEeecCCCCCCC-CC--CCcCEEEEcCCCCCCCCC
Q 025645 6 EKRYALFLAAKDSDYVLK-VYG-GYFNVFVAAFGE---EGERWDLFRVVEGDFPDFN-DL--HKYDGFVISGSPYDAYGN 77 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~-~~~-~~~~~~~~~l~~---~g~~~~~~~~~~~~~~~~~-~l--~~~dglIi~Gg~~~~~~~ 77 (250)
.+|+++++.+...+.+.. ..+ .....+...+++ .+.++.+++..+.-..... .+ ...|.+|++-.|....
T Consensus 28 g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s-- 105 (169)
T cd02037 28 GYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVA-- 105 (169)
T ss_pred CCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhh--
Confidence 568899887654432111 000 111223334432 4567777765443211000 11 3578888886544221
Q ss_pred ChhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 78 DNWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 78 ~~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
.....++++.+.+.+.|++|+..-+
T Consensus 106 ---~~~~~~~~~~l~~~~~~~~gvv~N~ 130 (169)
T cd02037 106 ---LDDVRKAIDMFKKVNIPILGVVENM 130 (169)
T ss_pred ---HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 3455666777777788999987543
No 367
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=36.89 E-value=76 Score=26.73 Aligned_cols=59 Identities=10% Similarity=0.039 Sum_probs=32.4
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC--CC-----CCCcCEEEEcCC
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF--ND-----LHKYDGFVISGS 70 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~-----l~~~dglIi~Gg 70 (250)
||+|+..+...+++... ..-+.+.+++.|..+.+......+-+.. .. -.++||||+.+.
T Consensus 1 ~igvvvp~~~n~f~~~~----~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 66 (295)
T TIGR02955 1 KLCALYPHLKDSYWLSI----NYGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTV 66 (295)
T ss_pred CeeEEecCCCcHHHHHH----HHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 57888766555543322 2334566777888877654321110100 00 147899999753
No 368
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.81 E-value=57 Score=26.63 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=31.6
Q ss_pred EEEEecCC-CChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCC
Q 025645 9 YALFLAAK-DSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGS 70 (250)
Q Consensus 9 iail~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg 70 (250)
|+++..+. ..++.... ...+.+.+++.|..+.++....+...... .-.++||+|+.+.
T Consensus 2 ig~v~~~~~~~~~~~~~----~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 65 (269)
T cd06288 2 IGLISDEIATTPFAVEI----ILGAQDAAREHGYLLLVVNTGGDDELEAEAVEALLDHRVDGIIYATM 65 (269)
T ss_pred eEEEeCCCCCCccHHHH----HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 67877664 44443322 23456677888988766543221100000 0136899999874
No 369
>CHL00067 rps2 ribosomal protein S2
Probab=36.50 E-value=45 Score=27.66 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=23.3
Q ss_pred CcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 61 KYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
.+|.||+.+...+ ..+++++...++|+.|||
T Consensus 161 ~P~~iiv~d~~~~-----------~~ai~Ea~~l~IPvIaiv 191 (230)
T CHL00067 161 LPDIVIIIDQQEE-----------YTALRECRKLGIPTISIL 191 (230)
T ss_pred CCCEEEEeCCccc-----------HHHHHHHHHcCCCEEEEE
Confidence 3688888864321 246788888999999999
No 370
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=36.42 E-value=37 Score=28.34 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCCceEEEEeecCC-CCCC-------CCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHH--hcCCcEE
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGD-FPDF-------NDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLD--AMQKKVL 99 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~-~~~~-------~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~--~~~~Pil 99 (250)
..+.+.|++.|.++..+....-. .++. ..+++||.||++-..+ + ....+.++... -.+.|+.
T Consensus 16 ~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~na-V-------~~~~~~l~~~~~~~~~~~~~ 87 (255)
T PRK05752 16 AALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPA-A-------RLGLELLDRYWPQPPQQPWF 87 (255)
T ss_pred HHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHH-H-------HHHHHHHHhhCCCCcCCEEE
Confidence 44778999999987754322211 1110 3467899999994211 1 12222222211 0136777
Q ss_pred EEehHHHHHHHHcCceE
Q 025645 100 GICFGHQVLCRALGGKV 116 (250)
Q Consensus 100 GIC~G~Qlla~a~gg~v 116 (250)
.|.-+=--....+|-.+
T Consensus 88 aVG~~Ta~al~~~G~~~ 104 (255)
T PRK05752 88 SVGAATAAILQDYGLDV 104 (255)
T ss_pred EECHHHHHHHHHcCCCc
Confidence 77666554445555443
No 371
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=36.38 E-value=15 Score=28.23 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=32.9
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC-----C--CCC---CCCCCCcCEEEEcCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG-----D--FPD---FNDLHKYDGFVISGSPY 72 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-----~--~~~---~~~l~~~dglIi~Gg~~ 72 (250)
..+||+++..-. | +.+.|.+.+.++.++..... . ++. .+.+.++|.+++||+.-
T Consensus 10 ~~~~V~~VG~f~--P------------~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsTl 73 (147)
T PF04016_consen 10 PGDKVGMVGYFQ--P------------LVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGSTL 73 (147)
T ss_dssp TTSEEEEES--H--C------------CHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHHC
T ss_pred CCCEEEEEcCcH--H------------HHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeeee
Confidence 456888885321 1 35677778888888876551 1 111 12367899999999743
No 372
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=36.11 E-value=78 Score=26.91 Aligned_cols=62 Identities=10% Similarity=0.082 Sum_probs=34.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSP 71 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~ 71 (250)
...|+++......+++. .+..-+.+.+++.|..+.+.....+...... .-.++||+|+.+..
T Consensus 56 ~~~Igvi~~~~~~~~~~----~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 122 (327)
T PRK10423 56 TRTIGMLITASTNPFYS----ELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTE 122 (327)
T ss_pred CCeEEEEeCCCCCCcHH----HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 34699988655444422 2334456778888988765432211100000 01468999998643
No 373
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=36.00 E-value=1.8e+02 Score=24.66 Aligned_cols=73 Identities=19% Similarity=0.188 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCceEEEEeecC-CCC---CCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHh-cCCcEEE-EehH
Q 025645 31 VFVAAFGEEGERWDLFRVVEG-DFP---DFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDA-MQKKVLG-ICFG 104 (250)
Q Consensus 31 ~~~~~l~~~g~~~~~~~~~~~-~~~---~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~-~~~PilG-IC~G 104 (250)
.+.+.|++.|.++.++..... +.. ....-.++|.||+.||-+.. .+.++.+.. .+.|.+| |=.|
T Consensus 23 ~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl----------~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 23 EVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTI----------NEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred HHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChH----------HHHHHHHhcCCCCCcEEEEcCc
Confidence 356788888988877654332 111 00111357999999995543 233344333 3567788 5555
Q ss_pred HH-HHHHHcC
Q 025645 105 HQ-VLCRALG 113 (250)
Q Consensus 105 ~Q-lla~a~g 113 (250)
-- .+++.+|
T Consensus 93 t~N~~a~~l~ 102 (293)
T TIGR00147 93 TANDFARSLG 102 (293)
T ss_pred CHHHHHHHcC
Confidence 33 3455555
No 374
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.79 E-value=73 Score=26.04 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=32.5
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC---CC--CCCcCEEEEcCC
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF---ND--LHKYDGFVISGS 70 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~---~~--l~~~dglIi~Gg 70 (250)
|+++..+...+++.. +...+.+.+++.|.++.+.....+..... .. -..+||||+.+.
T Consensus 2 Ig~i~p~~~~~~~~~----~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 2 VGLIVADIRNPFFTA----VSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred EEEEecccccccHHH----HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 788876655544332 33445677888898876654322110000 00 136899999874
No 375
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=35.79 E-value=1.2e+02 Score=20.00 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEe
Q 025645 82 LKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGIC 102 (250)
....+.++.+.+.+.|+++|+
T Consensus 61 ~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 61 EELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 356677888888999999999
No 376
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=35.65 E-value=77 Score=22.83 Aligned_cols=83 Identities=13% Similarity=0.043 Sum_probs=43.7
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-CCCCCCcCEEEEcCCCCCCCCCChhHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-FNDLHKYDGFVISGSPYDAYGNDNWILKL 84 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~l~~~dglIi~Gg~~~~~~~~~~~~~~ 84 (250)
..||.|+..+.... . ...+...|.+.|..+............ ...+..=|.+|+-.-++. ....
T Consensus 5 ~~~i~i~G~G~s~~--~------A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~-------~~~~ 69 (131)
T PF01380_consen 5 AKRIYIYGSGSSYG--V------AQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGE-------TREL 69 (131)
T ss_dssp SSEEEEEESTHHHH--H------HHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSST-------THHH
T ss_pred CCEEEEEEcchHHH--H------HHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeecccc-------chhh
Confidence 45777876654332 1 122345555555554433221111111 122333465555532221 2467
Q ss_pred HHHHHHHHhcCCcEEEEeh
Q 025645 85 CFMLQTLDAMQKKVLGICF 103 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~ 103 (250)
.+.++.+.+.+.|++.||-
T Consensus 70 ~~~~~~ak~~g~~vi~iT~ 88 (131)
T PF01380_consen 70 IELLRFAKERGAPVILITS 88 (131)
T ss_dssp HHHHHHHHHTTSEEEEEES
T ss_pred hhhhHHHHhcCCeEEEEeC
Confidence 7788888889999999983
No 377
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=35.45 E-value=69 Score=29.74 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=36.5
Q ss_pred ccceEEEEecC-CCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC-C---CCCCCCCCCcCEEEEcCCCCC
Q 025645 5 EEKRYALFLAA-KDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG-D---FPDFNDLHKYDGFVISGSPYD 73 (250)
Q Consensus 5 ~~~riail~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~---~~~~~~l~~~dglIi~Gg~~~ 73 (250)
+++|+.|+... ......... +...+...|++.|++++++..... + +....++.++|+||+.||-+.
T Consensus 110 ~~kr~lvIvNP~SGkg~a~k~---~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGDGT 180 (481)
T PLN02958 110 RPKRLLVFVNPFGGKKSASKI---FFDVVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGI 180 (481)
T ss_pred CCcEEEEEEcCCCCCcchhHH---HHHHHHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCCCH
Confidence 45788877532 222211111 223355688999998876653321 1 111122467899999999553
No 378
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=35.33 E-value=3e+02 Score=24.42 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=23.8
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcE
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKV 98 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pi 98 (250)
.+.+.|+++ .|.++....--.....++++.+.+.+..|
T Consensus 172 ~~~~~i~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~i 209 (402)
T TIGR03542 172 PKIDIIYLC-SPNNPTGTVLTKEQLKELVDYANEHGSLI 209 (402)
T ss_pred CCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCeEE
Confidence 457888887 77777554322345566666666655554
No 379
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=35.27 E-value=50 Score=27.31 Aligned_cols=31 Identities=10% Similarity=-0.017 Sum_probs=23.2
Q ss_pred CcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 61 KYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
.+|.||+.+-.. ....++++...++|+.|+|
T Consensus 155 ~Pd~vii~d~~~-----------~~~ai~Ea~~l~IP~I~iv 185 (225)
T TIGR01011 155 LPDLLFVIDPVK-----------EKIAVAEARKLGIPVVAIV 185 (225)
T ss_pred CCCEEEEeCCCc-----------cHHHHHHHHHcCCCEEEEe
Confidence 478888886422 2346788888999999999
No 380
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=34.99 E-value=46 Score=27.16 Aligned_cols=30 Identities=10% Similarity=0.094 Sum_probs=22.5
Q ss_pred cCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 62 YDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 62 ~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
+|.||+.+-..+ ..+++++...++|+.|+|
T Consensus 144 P~~vii~~~~~~-----------~~~i~Ea~~l~IP~i~i~ 173 (211)
T PF00318_consen 144 PDLVIILDPNKN-----------KNAIREANKLNIPTIAIV 173 (211)
T ss_dssp BSEEEESSTTTT-----------HHHHHHHHHTTS-EEEEE
T ss_pred CcEEEEeccccc-----------chhHHHHHhcCceEEEee
Confidence 788999864222 346788889999999999
No 381
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=34.69 E-value=40 Score=24.95 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
+.+.+.+|+.-|+... ...|+.. .|..+++.++||+||.+.
T Consensus 68 i~~s~~~IVLig~~T~--~s~wV~~---EI~~A~~~~~~Ii~V~~~ 108 (130)
T PF08937_consen 68 IKNSSVTIVLIGPNTA--KSKWVNW---EIEYALKKGKPIIGVYLP 108 (130)
T ss_dssp HHTEEEEEEE--TT------HHHHH---HHHHHTTT---EEEEETT
T ss_pred HhcCCEEEEEeCCCcc--cCcHHHH---HHHHHHHCCCCEEEEECC
Confidence 3567888888887653 3456654 455677889999999875
No 382
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=34.65 E-value=28 Score=25.72 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=15.9
Q ss_pred cCCcEEEEehHHHHHHHHcCceE
Q 025645 94 MQKKVLGICFGHQVLCRALGGKV 116 (250)
Q Consensus 94 ~~~PilGIC~G~Qlla~a~gg~v 116 (250)
.+..|.|||.| ||.++|-.+
T Consensus 14 ~~~~i~GVCaG---iA~y~gi~~ 33 (118)
T PRK10697 14 QQGMVKGVCAG---IAHYFDVPV 33 (118)
T ss_pred CCCEEeeeHHH---HHHHHCCCH
Confidence 46899999999 788887543
No 383
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=34.56 E-value=1.3e+02 Score=27.67 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=39.5
Q ss_pred HHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhc-C-CcEEEEehHHHHHHHHc
Q 025645 35 AFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAM-Q-KKVLGICFGHQVLCRAL 112 (250)
Q Consensus 35 ~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~-~-~PilGIC~G~Qlla~a~ 112 (250)
.++.+|.+-.++. ++ +.....|+++|...+.- -.-.+.+++.+... + .-|+||..|++-|...+
T Consensus 64 ~~~~agpr~~i~f-------~p---~~~riaIvtsGG~~PGm----N~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~ 129 (443)
T PRK06830 64 SFEKAGPREKIYF-------DP---SKVKAAIVTCGGLCPGL----NDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRY 129 (443)
T ss_pred hhhhcCCcceeEE-------cC---cccEEEEECCCCCchHH----HHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhcc
Confidence 5566777666554 22 23455566644333321 13345666766654 4 67999999999887644
Q ss_pred Cce
Q 025645 113 GGK 115 (250)
Q Consensus 113 gg~ 115 (250)
+++
T Consensus 130 ~~~ 132 (443)
T PRK06830 130 GHD 132 (443)
T ss_pred CCC
Confidence 333
No 384
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=34.32 E-value=3.2e+02 Score=24.35 Aligned_cols=38 Identities=13% Similarity=-0.000 Sum_probs=22.9
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcE
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKV 98 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pi 98 (250)
.+.+.|+++ .|.++....--.+...++++.+.+.+..|
T Consensus 175 ~~~k~i~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~i 212 (409)
T PRK07590 175 EKVDIIYLC-FPNNPTGTVLTKEQLKAWVDYAKENGSLI 212 (409)
T ss_pred cCceEEEEe-CCCCCcCCcCCHHHHHHHHHHHHHcCeEE
Confidence 467888887 77776544322345566666665555443
No 385
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=33.96 E-value=3e+02 Score=23.44 Aligned_cols=83 Identities=13% Similarity=-0.010 Sum_probs=46.5
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC-CCCC------CCCCCCcCEEEEcCCCCCCCCCCh
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG-DFPD------FNDLHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~------~~~l~~~dglIi~Gg~~~~~~~~~ 79 (250)
.+|+++......+++... ..-+.+...+.|........... +.+. .....++|+|++...-.
T Consensus 34 ~~i~~~~~~~~~~f~~~~----~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~------- 102 (322)
T COG1879 34 KTIGVVVPTLGNPFFQAV----RKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDP------- 102 (322)
T ss_pred ceEEEEeccCCChHHHHH----HHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCCh-------
Confidence 578888877777654322 12244556666762333322211 1100 00136899999986522
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEe
Q 025645 80 WILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGIC 102 (250)
..+...++++.+.++||..+=
T Consensus 103 --~~~~~~v~~a~~aGIpVv~~d 123 (322)
T COG1879 103 --DALTPAVKKAKAAGIPVVTVD 123 (322)
T ss_pred --hhhHHHHHHHHHCCCcEEEEe
Confidence 244567788888888876553
No 386
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.95 E-value=1e+02 Score=28.18 Aligned_cols=56 Identities=14% Similarity=0.053 Sum_probs=32.3
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCC-----------C-CCCCCCCcCEEEEcCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDF-----------P-DFNDLHKYDGFVISGSP 71 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-----------~-~~~~l~~~dglIi~Gg~ 71 (250)
..+||.|+..+..- -..+++|.+.|.++...+...... + ....+.++|.||.+.|-
T Consensus 8 ~~~~i~viG~G~~G-----------~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i 75 (460)
T PRK01390 8 AGKTVAVFGLGGSG-----------LATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGV 75 (460)
T ss_pred CCCEEEEEeecHhH-----------HHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCC
Confidence 34688888765421 123678888898876655322100 0 01124568989988764
No 387
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=33.83 E-value=73 Score=26.24 Aligned_cols=79 Identities=18% Similarity=0.019 Sum_probs=40.0
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-C-----CCCCcCEEEEcCCCCCCCCCChhH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-N-----DLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~-----~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
+|+++.. ...+++.. ....+.+.+++.|..+.+......+.... + .-.++||+|+.+...+
T Consensus 1 ~i~~v~~-~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~-------- 67 (271)
T cd06314 1 TIAVVTN-GASPFWKI----AEAGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPIDPK-------- 67 (271)
T ss_pred CeEEEcC-CCcHHHHH----HHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecCChh--------
Confidence 4777763 23444322 23345567788888876652111110000 0 0147899999863211
Q ss_pred HHHHHHHHHHHhcCCcEEEE
Q 025645 82 LKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGI 101 (250)
...+.++.+.+ ++|+.-+
T Consensus 68 -~~~~~l~~~~~-~ipvV~~ 85 (271)
T cd06314 68 -AVIPALNKAAA-GIKLITT 85 (271)
T ss_pred -HhHHHHHHHhc-CCCEEEe
Confidence 12234455555 7777665
No 388
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=33.74 E-value=33 Score=22.07 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=13.9
Q ss_pred cCCcEEEEehHHHHHHHHcCc
Q 025645 94 MQKKVLGICFGHQVLCRALGG 114 (250)
Q Consensus 94 ~~~PilGIC~G~Qlla~a~gg 114 (250)
.++-+.|+|-| ||+.+|-
T Consensus 9 ~~~~i~GVcaG---lA~~~gi 26 (61)
T PF04024_consen 9 DDRVIAGVCAG---LAEYFGI 26 (61)
T ss_pred CCCEEeeeHHH---HHHHHCc
Confidence 47899999999 5666654
No 389
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=33.52 E-value=1.5e+02 Score=25.69 Aligned_cols=82 Identities=15% Similarity=0.113 Sum_probs=44.9
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC-CCCC-CCC-----CCCcCEEEEcCCCCCCCCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG-DFPD-FND-----LHKYDGFVISGSPYDAYGND 78 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~-~~~-----l~~~dglIi~Gg~~~~~~~~ 78 (250)
+++|+++..+..++++... ...+.+.+++.|..+.+...... +... ... -.++||||+.+...+
T Consensus 46 t~~Igvv~p~~~~~f~~~~----~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~~~----- 116 (343)
T PRK10936 46 AWKLCALYPHLKDSYWLSV----NYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVTPD----- 116 (343)
T ss_pred CeEEEEEecCCCchHHHHH----HHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChH-----
Confidence 4689998866555554332 23456677888988776643211 1000 000 146899999753211
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEE
Q 025645 79 NWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 79 ~~~~~~~~~i~~~~~~~~PilGI 101 (250)
.+.+.+ .+.+.++|++-+
T Consensus 117 ----~~~~~l-~~~~~giPvV~~ 134 (343)
T PRK10936 117 ----GLNPDL-ELQAANIPVIAL 134 (343)
T ss_pred ----HhHHHH-HHHHCCCCEEEe
Confidence 112233 455678898644
No 390
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=33.25 E-value=2.4e+02 Score=24.61 Aligned_cols=82 Identities=15% Similarity=-0.006 Sum_probs=44.6
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC------CCCCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN------DLHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~------~l~~~dglIi~Gg~~~~~~~~~ 79 (250)
.+|++|+..+..... +....+.+.+++.|.++......+....+.. .-.++|+|++.+...+
T Consensus 140 ~~kvaiv~~~~~~g~------~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~~------ 207 (351)
T cd06334 140 GKKIALVYHDSPFGK------EPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVM------ 207 (351)
T ss_pred CCeEEEEeCCCccch------hhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccch------
Confidence 478999976554321 2335577888999988654322221111100 0146899998875432
Q ss_pred hHHHHHHHHHHHHhcC--CcEEEEeh
Q 025645 80 WILKLCFMLQTLDAMQ--KKVLGICF 103 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~--~PilGIC~ 103 (250)
...+++.+.+.+ .+++|.-.
T Consensus 208 ----~~~~~~~~~~~G~~~~~~~~~~ 229 (351)
T cd06334 208 ----NPVAIKEAKRVGLDDKFIGNWW 229 (351)
T ss_pred ----HHHHHHHHHHcCCCceEEEeec
Confidence 233556555544 45665433
No 391
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=32.72 E-value=57 Score=26.59 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=23.2
Q ss_pred CcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 61 KYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
.+|.||+..-. .....++++...++|+.|+|
T Consensus 114 ~Pdliiv~dp~-----------~~~~AI~EA~kl~IP~Iaiv 144 (204)
T PRK04020 114 EPDVVVVTDPR-----------GDAQAVKEAIEVGIPVVALC 144 (204)
T ss_pred CCCEEEEECCc-----------ccHHHHHHHHHhCCCEEEEE
Confidence 46888888632 12346788888899999999
No 392
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=32.68 E-value=1.5e+02 Score=25.67 Aligned_cols=65 Identities=15% Similarity=0.009 Sum_probs=39.2
Q ss_pred HHHHHhcCCCceEEEEeecCCCCCCCCC--CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcE
Q 025645 32 FVAAFGEEGERWDLFRVVEGDFPDFNDL--HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKV 98 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~~~~~~l--~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pi 98 (250)
+...++..|.++..+.+.... ++.+.+ .+.+.++++ .|.++....--.+.+.++++.+.+.+..|
T Consensus 92 y~~~~~~~G~~v~~vp~~~~~-~~~~~l~~~~~k~v~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~i 158 (332)
T PRK06425 92 YKGYAFTHGIRISALPFNLIN-NNPEILNNYNFDLIFIV-SPDNPLGNLISRDSLLTISEICRKKGALL 158 (332)
T ss_pred HHHHHHHcCCeEEEEeCCccc-CcHHHHhhcCCCEEEEe-CCCCCcCCccCHHHHHHHHHHHHHcCCEE
Confidence 456777789988877654321 112222 256788888 78877655322455666777766655544
No 393
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=32.42 E-value=93 Score=27.75 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=26.2
Q ss_pred CcCEEEEcCCCCCCCCCCh-hHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 61 KYDGFVISGSPYDAYGNDN-WILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~~~-~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
++|.||+.|=-.+.....+ -.....+.++++...++||+.|=.=
T Consensus 40 ~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GN 84 (390)
T COG0420 40 KVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGN 84 (390)
T ss_pred cCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCC
Confidence 4588888874433322222 1334566666666678898887543
No 394
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=32.35 E-value=57 Score=27.62 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=23.0
Q ss_pred CcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 61 KYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
.+|.||+..-.. ....++++...++|+.|+|
T Consensus 157 ~Pd~iii~d~~~-----------~~~ai~Ea~kl~IPiIaiv 187 (258)
T PRK05299 157 LPDALFVVDPNK-----------EHIAVKEARKLGIPVVAIV 187 (258)
T ss_pred CCCEEEEeCCCc-----------cHHHHHHHHHhCCCEEEEe
Confidence 468888886421 2346788888999999999
No 395
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=32.25 E-value=1.5e+02 Score=26.67 Aligned_cols=59 Identities=22% Similarity=0.166 Sum_probs=34.5
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEE---EEehHHHHH-HHHcCceEEe
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVL---GICFGHQVL-CRALGGKVGK 118 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pil---GIC~G~Qll-a~a~gg~v~~ 118 (250)
.++|+|+++|..+...+..+........++.+...++||+ ||-.|..++ +.++|+...-
T Consensus 273 ~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~ 335 (383)
T cd03332 273 AGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVL 335 (383)
T ss_pred CCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEE
Confidence 4789999996544333332222223333444444568987 677787776 4477876543
No 396
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=31.85 E-value=3.2e+02 Score=23.48 Aligned_cols=83 Identities=11% Similarity=0.101 Sum_probs=44.9
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
+||-++..+... ... ..+...|...|..+...............+..-|.+|+.--.+. ...+.+
T Consensus 48 ~~I~i~G~G~S~--~~a------~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~-------t~~~~~ 112 (326)
T PRK10892 48 GKVVVMGMGKSG--HIG------RKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGE-------SSEILA 112 (326)
T ss_pred CeEEEEeCcHhH--HHH------HHHHHHHhcCCceeEEeChHHhhccccccCCCCCEEEEEeCCCC-------CHHHHH
Confidence 467666655322 111 22455667788877654211111001112333355554432222 246788
Q ss_pred HHHHHHhcCCcEEEEehH
Q 025645 87 MLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G 104 (250)
.++.+.+.+.|+++|+-.
T Consensus 113 ~~~~ak~~g~~vi~iT~~ 130 (326)
T PRK10892 113 LIPVLKRLHVPLICITGR 130 (326)
T ss_pred HHHHHHHCCCcEEEEECC
Confidence 889999999999999954
No 397
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.77 E-value=2.2e+02 Score=26.02 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=19.7
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEE
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFR 47 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 47 (250)
.+||+|+..+.. ....+++|.+.|.++....
T Consensus 14 ~~~i~v~G~G~s-----------G~a~a~~L~~~G~~V~~~D 44 (458)
T PRK01710 14 NKKVAVVGIGVS-----------NIPLIKFLVKLGAKVTAFD 44 (458)
T ss_pred CCeEEEEcccHH-----------HHHHHHHHHHCCCEEEEEC
Confidence 467888865532 1235677888888776655
No 398
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=31.61 E-value=90 Score=23.86 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=22.4
Q ss_pred cCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEE
Q 025645 62 YDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVL 99 (250)
Q Consensus 62 ~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pil 99 (250)
.++|.++||. .. ...+.++++.+.+.+.++.
T Consensus 62 ~~gVt~SGGE--l~-----~~~l~~ll~~lk~~Gl~i~ 92 (147)
T TIGR02826 62 ISCVLFLGGE--WN-----REALLSLLKIFKEKGLKTC 92 (147)
T ss_pred CCEEEEechh--cC-----HHHHHHHHHHHHHCCCCEE
Confidence 4799999997 21 2467778888777777663
No 399
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.51 E-value=1.4e+02 Score=24.80 Aligned_cols=40 Identities=20% Similarity=0.084 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCC
Q 025645 29 FNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGS 70 (250)
Q Consensus 29 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg 70 (250)
...+.+.+++.|..+.+......+ ..-.-.++||+|+.+.
T Consensus 26 ~~~i~~~~~~~gy~~~~~~~~~~~--~~l~~~~vdgiIi~~~ 65 (269)
T cd06287 26 AAAAAESALERGLALCLVPPHEAD--SPLDALDIDGAILVEP 65 (269)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCch--hhhhccCcCeEEEecC
Confidence 345667888899888776543111 1111247999999753
No 400
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=31.43 E-value=4.1e+02 Score=24.33 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=24.6
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEe
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRV 48 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 48 (250)
+++++|+|+..+.+.. ++...+.+.|.+.|.+-.++.+
T Consensus 5 ~~p~siavvGaS~~~~-------~~g~~~~~~l~~~gf~g~v~~V 42 (447)
T TIGR02717 5 FNPKSVAVIGASRDPG-------KVGYAIMKNLIEGGYKGKIYPV 42 (447)
T ss_pred cCCCEEEEEccCCCCC-------chHHHHHHHHHhCCCCCcEEEE
Confidence 4578899998665432 3556677788888864344433
No 401
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=31.27 E-value=1e+02 Score=27.13 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=23.6
Q ss_pred CCCcCEEEEcCCC-CCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 59 LHKYDGFVISGSP-YDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 59 l~~~dglIi~Gg~-~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
+.+.|-|||..|. ...--..--++++.+.+++ ...|+++||
T Consensus 187 I~~AD~IviGPgSl~TSIlP~Lllp~I~eaLr~---~~ap~i~v~ 228 (323)
T COG0391 187 IKEADLIVIGPGSLFTSILPILLLPGIAEALRE---TVAPIVYVC 228 (323)
T ss_pred HHhCCEEEEcCCccHhhhchhhchhHHHHHHHh---CCCCEEEec
Confidence 5678999997553 2211111113444555544 678999999
No 402
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=31.15 E-value=1.7e+02 Score=23.32 Aligned_cols=53 Identities=15% Similarity=0.178 Sum_probs=32.4
Q ss_pred EEEEcCCCceEEEEECCcEEEEecCCCCCHHHHHHHHHHHhcCCCccHHHHHHHHhh
Q 025645 171 VIGFSDKTGVEMFTIGDHILGIQGHPEYTKDILYNLIDRLLNNNSIEREFAENAKFG 227 (250)
Q Consensus 171 ~la~s~~~~v~~~~~~~~~~g~QfHPE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (250)
+|+.--++.+..+..+++++|+-|++++.-+.+..++.. ..+|+++.+....-
T Consensus 29 vL~dvl~aNvyIis~kGkiLGy~~~~~~~~~~~~~~~~~----~~fpe~yn~~ll~i 81 (177)
T PF06018_consen 29 VLSDVLEANVYIISRKGKILGYSFIDDFECDRMEEMLEE----KRFPEEYNERLLNI 81 (177)
T ss_dssp HHHHHHTSEEEEEETTSBEEEEE-SS----HHHHHHHHH----TB--HHHHHHHHT-
T ss_pred HHHHhhcCcEEEEeCCccEEEEeccCCCCcHHHHHHHhc----CcCCHHHHHHHhcC
Confidence 344444566777777889999999999988888876543 46888877776553
No 403
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=31.11 E-value=2.2e+02 Score=25.07 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=44.0
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC------CCCCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN------DLHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~------~l~~~dglIi~Gg~~~~~~~~~ 79 (250)
.++++++..++... . +....+.+.+++.|.++...........+.. .-.++|+|++.|...
T Consensus 161 ~k~va~i~~d~~~g--~----~~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~~~~~~------- 227 (369)
T PRK15404 161 PKRIAVLHDKQQYG--E----GLARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYYGGYHP------- 227 (369)
T ss_pred CCEEEEEeCCCchh--H----HHHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEECCCch-------
Confidence 46889987654321 1 2334567888999988764322221111110 124689888765422
Q ss_pred hHHHHHHHHHHHHhcC--CcEEEEe
Q 025645 80 WILKLCFMLQTLDAMQ--KKVLGIC 102 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~--~PilGIC 102 (250)
....+++++.+.+ .|++|.+
T Consensus 228 ---~~~~~~k~~~~~G~~~~~i~~~ 249 (369)
T PRK15404 228 ---EMGQILRQAREAGLKTQFMGPE 249 (369)
T ss_pred ---HHHHHHHHHHHCCCCCeEEecC
Confidence 2234566666554 5677765
No 404
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=31.06 E-value=1.2e+02 Score=26.91 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=33.6
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEE---EEehHHHHH-HHHcCceEEec
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVL---GICFGHQVL-CRALGGKVGKA 119 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pil---GIC~G~Qll-a~a~gg~v~~~ 119 (250)
.++|+|+++|-.+...|..+.....+..++.+...+.||+ ||..|.-++ +.++|++..-.
T Consensus 245 ~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~i 308 (356)
T PF01070_consen 245 AGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGI 308 (356)
T ss_dssp TT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEE
T ss_pred cCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEE
Confidence 4689999995333222332222333344455556689998 688898776 56788876544
No 405
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=30.84 E-value=1e+02 Score=27.12 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCC-hhHHHHHHHHHHHHhcCCcEEEEehHHH
Q 025645 28 YFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGND-NWILKLCFMLQTLDAMQKKVLGICFGHQ 106 (250)
Q Consensus 28 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~-~~~~~~~~~i~~~~~~~~PilGIC~G~Q 106 (250)
+...+.+.|++.|.++.+..-..+...+.-+.-+++..++.+-..+..+.. .+..+..++.+.+.+ .+|=+.||.|--
T Consensus 15 fFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~-~~pDv~is~~s~ 93 (335)
T PF04007_consen 15 FFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKK-FKPDVAISFGSP 93 (335)
T ss_pred HHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh-hCCCEEEecCcH
Confidence 344567889999999876643322222222345788888876333332221 234445555555543 578788887754
Q ss_pred HHH---HHcCceE
Q 025645 107 VLC---RALGGKV 116 (250)
Q Consensus 107 lla---~a~gg~v 116 (250)
-++ ..+|-..
T Consensus 94 ~a~~va~~lgiP~ 106 (335)
T PF04007_consen 94 EAARVAFGLGIPS 106 (335)
T ss_pred HHHHHHHHhCCCe
Confidence 444 3455443
No 406
>PLN02204 diacylglycerol kinase
Probab=30.83 E-value=1.3e+02 Score=28.87 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=38.2
Q ss_pred cccceEEEEecC-CCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC-CCC------CCCCCCCcCEEEEcCCCCC
Q 025645 4 MEEKRYALFLAA-KDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG-DFP------DFNDLHKYDGFVISGSPYD 73 (250)
Q Consensus 4 ~~~~riail~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~------~~~~l~~~dglIi~Gg~~~ 73 (250)
.+++++.|++.. ......... +. .....|+++++++.++..... +.. ...+++.+|+||..||-+.
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~---~~-~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt 230 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRT---WE-TVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGF 230 (601)
T ss_pred CCCceEEEEECCCCCCcchHHH---HH-HHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccH
Confidence 356788887632 222222222 22 356788999998877654432 111 1123678999999999553
No 407
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=30.77 E-value=76 Score=23.17 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=31.8
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC--------CCCCCCcCEEEEc
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD--------FNDLHKYDGFVIS 68 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~--------~~~l~~~dglIi~ 68 (250)
..+.+++..+.+.... .|..+..+..++.|+.+..+.+..+.... ...=.++|||++-
T Consensus 29 ~P~Laii~vg~d~~S~-----~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlvq 94 (117)
T PF00763_consen 29 TPKLAIILVGDDPASI-----SYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGILVQ 94 (117)
T ss_dssp --EEEEEEES--HHHH-----HHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred CcEEEEEecCCChhHH-----HHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEEc
Confidence 3578888777664321 25666778889999999988764332110 0001468999985
No 408
>PRK09739 hypothetical protein; Provisional
Probab=30.67 E-value=1.3e+02 Score=24.03 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=26.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG 51 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 51 (250)
.+||++|..++...-... ...+.+.+.+++.|.+++++.+...
T Consensus 3 mmkiliI~~sp~~~s~s~---~l~~~~~~~~~~~g~~v~~~dL~~~ 45 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTA---KVAEAIHQRAQERGHQVEELDLYRS 45 (199)
T ss_pred CceEEEEEcCCCCCCcHH---HHHHHHHHHHHHCCCEEEEEEhhhh
Confidence 368999987765321100 1224456667778888888776543
No 409
>PLN02884 6-phosphofructokinase
Probab=30.66 E-value=77 Score=28.83 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=0.0
Q ss_pred CcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcC--CcEEEE-------------ehHHHHHHHH
Q 025645 61 KYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQ--KKVLGI-------------CFGHQVLCRA 111 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~--~PilGI-------------C~G~Qlla~a 111 (250)
++|+||+-||.++. .....+-+.+.+.+ +|+.|| |+|+.-.+..
T Consensus 143 ~Id~LivIGGdgS~-------~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~ 201 (411)
T PLN02884 143 GINMLFVLGGNGTH-------AGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEE 201 (411)
T ss_pred CCCEEEEECCchHH-------HHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHH
No 410
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.65 E-value=1.4e+02 Score=24.72 Aligned_cols=80 Identities=10% Similarity=-0.080 Sum_probs=39.7
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
+++.+.+...+++.. ...-+.+.+++.|.++.+.....+.....+ .-.++||||+.+. +. ..
T Consensus 2 ~~~~~~~~~~~f~~~----~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~--~~-------~~ 68 (272)
T cd06313 2 AAFSNIGLQATWCAQ----GKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPL--GI-------GT 68 (272)
T ss_pred cceeecccCChHHHH----HHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC--Ch-------HH
Confidence 455554433444322 223455677788988776643221100000 1246899999643 11 11
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 025645 84 LCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGI 101 (250)
..+.++.+.+.++|+.-+
T Consensus 69 ~~~~i~~~~~~~iPvV~~ 86 (272)
T cd06313 69 LTEAVQKAIARGIPVIDM 86 (272)
T ss_pred hHHHHHHHHHCCCcEEEe
Confidence 223456666667776543
No 411
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=30.64 E-value=2.1e+02 Score=20.71 Aligned_cols=88 Identities=11% Similarity=0.050 Sum_probs=45.6
Q ss_pred EEEEecCCCChhHHHhhCCHHH-----------HHHHHHhc-CCCceEEEEee-cCCCCCCCC---CCCcCEEEEcCCCC
Q 025645 9 YALFLAAKDSDYVLKVYGGYFN-----------VFVAAFGE-EGERWDLFRVV-EGDFPDFND---LHKYDGFVISGSPY 72 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~-----------~~~~~l~~-~g~~~~~~~~~-~~~~~~~~~---l~~~dglIi~Gg~~ 72 (250)
||++..+.+++.+...-..+.+ --.++|++ .|+.++.+.+. .+..|...+ -..+|.||-+..+.
T Consensus 2 ~~l~a~d~dK~~~~~~a~~~~~ll~Gf~i~AT~gTa~~L~~~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~~~ 81 (115)
T cd01422 2 IALIAHDNKKEDLVEFVKQHQELLSRHRLVATGTTGLLIQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPL 81 (115)
T ss_pred EeEEecccchHHHHHHHHHHHHHhcCCEEEEechHHHHHHHhhCCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCCCC
Confidence 6777777776654322111111 12456777 78888776331 111111100 14689999997652
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCCcEE
Q 025645 73 DAYGNDNWILKLCFMLQTLDAMQKKVL 99 (250)
Q Consensus 73 ~~~~~~~~~~~~~~~i~~~~~~~~Pil 99 (250)
..... ...-..+-|.+.+.++|++
T Consensus 82 ~~~~~---~~dg~~iRr~a~~~~Ip~~ 105 (115)
T cd01422 82 TAQPH---EPDVKALLRLCDVYNIPLA 105 (115)
T ss_pred CCCcc---cccHHHHHHHHHHcCCCEE
Confidence 21110 1223445567888899986
No 412
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=29.83 E-value=1.7e+02 Score=23.11 Aligned_cols=81 Identities=14% Similarity=0.021 Sum_probs=39.9
Q ss_pred eEEEEecCC-CChhHHHhhCCHHHHHHHHHhc--CCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCCCCCCCCh
Q 025645 8 RYALFLAAK-DSDYVLKVYGGYFNVFVAAFGE--EGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 8 riail~~~~-~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~~~~~~~~ 79 (250)
||+++.... ..++... +..-+...+++ .+.++.++....+.... .-.-.++|++|+++.....
T Consensus 1 ~Ig~i~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~----- 71 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQ----LLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSA----- 71 (269)
T ss_pred CceEEeecCCCcHHHHH----HHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHH-----
Confidence 578887555 3333222 22334456666 45554444321110000 0001368999998764221
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEe
Q 025645 80 WILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGIC 102 (250)
....+.+.+.++|++.+=
T Consensus 72 -----~~~~~~~~~~~ip~v~~~ 89 (269)
T cd01391 72 -----LAVVELAAAAGIPVVSLD 89 (269)
T ss_pred -----HHHHHHHHHcCCcEEEec
Confidence 113455566789987763
No 413
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=29.82 E-value=2.1e+02 Score=23.55 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=31.8
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CCCCCCcCEEEEcC
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FNDLHKYDGFVISG 69 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~~l~~~dglIi~G 69 (250)
||+||....+.. ...+.+.+++.|+++.++......... ...+..+|.++.-.
T Consensus 1 ~~~~~~~~~~~~---------~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~ 56 (277)
T TIGR00768 1 KLAILYDRIRLD---------EKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRI 56 (277)
T ss_pred CEEEEEcCCCHH---------HHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEec
Confidence 588887654432 245778999999998887654322110 01144578776644
No 414
>PHA02698 hypothetical protein; Provisional
Probab=29.56 E-value=48 Score=22.26 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=23.4
Q ss_pred ecCCCCCHHHHHHHHHHHhc---CCCccHHHHHHHHhhc
Q 025645 193 QGHPEYTKDILYNLIDRLLN---NNSIEREFAENAKFGL 228 (250)
Q Consensus 193 QfHPE~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 228 (250)
|+-||....++.+|++.+.- -+.++++..++.+..+
T Consensus 40 ~CsPEdMs~mLD~FLediq~ksElqLLsqEEMdELl~El 78 (89)
T PHA02698 40 QCSPEDMSDMLDNFLEDIQYKSELQLLSQEEMDELLVEL 78 (89)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 67788888899999986632 2334555555555443
No 415
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=29.54 E-value=70 Score=27.23 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=41.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-CCC--CCCCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-FPD--FNDLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~~~--~~~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
.+||+|+........ .. ....+.+..++.|.++..+.+...+ +.. .....+.|+++++.... . ..
T Consensus 131 ~k~igvl~~~~~~~~-~~----~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~-~------~~ 198 (294)
T PF04392_consen 131 AKRIGVLYDPSEPNS-VA----QIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLPDNL-V------DS 198 (294)
T ss_dssp --EEEEEEETT-HHH-HH----HHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HH-H------HH
T ss_pred CCEEEEEecCCCccH-HH----HHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEECCcc-h------Hh
Confidence 468988865443211 11 2244566777889888776654321 000 00124679999875421 1 12
Q ss_pred HHHHHHHHHHhcCCcEEEEe
Q 025645 83 KLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGIC 102 (250)
....++..+.+.++|++|..
T Consensus 199 ~~~~i~~~~~~~~iPv~~~~ 218 (294)
T PF04392_consen 199 NFEAILQLANEAKIPVFGSS 218 (294)
T ss_dssp THHHHHHHCCCTT--EEESS
T ss_pred HHHHHHHHHHhcCCCEEECC
Confidence 22335566667899999965
No 416
>PRK15482 transcriptional regulator MurR; Provisional
Probab=29.51 E-value=2.2e+02 Score=24.09 Aligned_cols=83 Identities=8% Similarity=-0.104 Sum_probs=43.3
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
.+||-|+..+... .. ...+...|...|..+....-..........+..=|.+|+-.-++. .....
T Consensus 135 A~~I~i~G~G~S~--~~------A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~-------t~~~~ 199 (285)
T PRK15482 135 APFIQITGLGGSA--LV------GRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGS-------KKEIV 199 (285)
T ss_pred CCeeEEEEeChhH--HH------HHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCC-------CHHHH
Confidence 4567777665432 11 223455666778776543200000000112233355555432222 24667
Q ss_pred HHHHHHHhcCCcEEEEeh
Q 025645 86 FMLQTLDAMQKKVLGICF 103 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~ 103 (250)
+.++.+.+.|.|+++||-
T Consensus 200 ~~~~~a~~~g~~iI~IT~ 217 (285)
T PRK15482 200 LCAEAARKQGATVIAITS 217 (285)
T ss_pred HHHHHHHHCCCEEEEEeC
Confidence 788888888999999984
No 417
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=29.43 E-value=1e+02 Score=26.94 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=26.4
Q ss_pred CCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 60 HKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
.+++||||-| |.++.. ..+.+.++++.++++||.-+
T Consensus 234 ~~~~GlVl~~~G~Gn~p------~~~~~~l~~a~~~gipVV~~ 270 (323)
T smart00870 234 SGAKGLVLEGTGAGNVP------PDLLEALKEALERGIPVVRT 270 (323)
T ss_pred CCCCEEEEEeeCCCCCC------HHHHHHHHHHHHCCCEEEEe
Confidence 3579999997 555543 24677778888889998866
No 418
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=29.41 E-value=1.2e+02 Score=26.80 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=26.5
Q ss_pred CCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 60 HKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
.+++||||-| |.++...+ ..+.+.++++.++++||.=+
T Consensus 232 ~~~~GiVl~~~G~Gn~p~~----~~~~~~l~~~~~~Gi~VV~~ 270 (335)
T PRK09461 232 QPVKALILRSYGVGNAPQN----PALLQELKEASERGIVVVNL 270 (335)
T ss_pred CCCCEEEEccCCCCCCCCC----HHHHHHHHHHHHCCCEEEEe
Confidence 3589999997 55554322 34566778888888998765
No 419
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=29.38 E-value=88 Score=22.03 Aligned_cols=35 Identities=9% Similarity=0.112 Sum_probs=19.5
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
.+..++|++||..-. .+.++.+.+.++|++.+=+.
T Consensus 60 ~~i~~iIltg~~~~~----------~~v~~la~~~~i~vi~t~~d 94 (105)
T PF07085_consen 60 AGIACIILTGGLEPS----------EEVLELAKELGIPVISTPYD 94 (105)
T ss_dssp TTECEEEEETT--------------HHHHHHHHHHT-EEEE-SS-
T ss_pred hCCCEEEEeCCCCCC----------HHHHHHHHHCCCEEEEECCC
Confidence 468999999874221 23445556678998876443
No 420
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=29.29 E-value=1.6e+02 Score=27.98 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHh----cCCcEEEEehHH
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDA----MQKKVLGICFGH 105 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~----~~~PilGIC~G~ 105 (250)
++++++|.+.|.++-.+.-.. |+. ......-..|+..+.+.|+.+.+ ..+-++|.|.|-
T Consensus 237 ~SlVr~lv~qG~~VflIsW~n---P~~--------------~~r~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~GyC~GG 299 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRN---PDK--------------AHREWGLSTYVDALKEAVDAVRAITGSRDLNLLGACAGG 299 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCC---CCh--------------hhcCCCHHHHHHHHHHHHHHHHHhcCCCCeeEEEECcch
Confidence 467788888888765554111 110 00001112344444555554432 346799999999
Q ss_pred HHHHH
Q 025645 106 QVLCR 110 (250)
Q Consensus 106 Qlla~ 110 (250)
-+++.
T Consensus 300 tl~a~ 304 (560)
T TIGR01839 300 LTCAA 304 (560)
T ss_pred HHHHH
Confidence 88875
No 421
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=29.26 E-value=2.6e+02 Score=21.25 Aligned_cols=104 Identities=15% Similarity=0.035 Sum_probs=60.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHH-----------HHHHHhcC-CCceEEEEeecC--CCCCCCC---CCCcCEEEEc
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNV-----------FVAAFGEE-GERWDLFRVVEG--DFPDFND---LHKYDGFVIS 68 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~-g~~~~~~~~~~~--~~~~~~~---l~~~dglIi~ 68 (250)
.++|+|...+.+++.+...-..+... -.++|++. |+.+..+ +... .-+...+ -..+|.||-+
T Consensus 4 ~~~v~lsv~d~dK~~l~~~a~~l~~ll~Gf~l~AT~gTa~~L~~~~Gi~v~~v-i~~~~gg~~~i~~~I~~g~i~lVInt 82 (142)
T PRK05234 4 RKRIALIAHDHKKDDLVAWVKAHKDLLEQHELYATGTTGGLIQEATGLDVTRL-LSGPLGGDQQIGALIAEGKIDMLIFF 82 (142)
T ss_pred CcEEEEEEeccchHHHHHHHHHHHHHhcCCEEEEeChHHHHHHhccCCeeEEE-EcCCCCCchhHHHHHHcCceeEEEEe
Confidence 36788888888877654322112121 24566777 8877765 3220 1111000 1468889887
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcC
Q 025645 69 GSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALG 113 (250)
Q Consensus 69 Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~g 113 (250)
..|..... .......+-|.+.+.++|++=-=-++..+..++.
T Consensus 83 ~dp~~~~~---~~~D~~~IRR~Av~~~IP~~T~l~tA~a~~~al~ 124 (142)
T PRK05234 83 RDPLTAQP---HDPDVKALLRLADVWNIPVATNRATADFLISSLL 124 (142)
T ss_pred cCCCCCCc---ccchHHHHHHHHHHcCCCEEcCHHHHHHHHHHHh
Confidence 53222111 0123345667788999999988888888888764
No 422
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=29.26 E-value=2e+02 Score=24.75 Aligned_cols=59 Identities=15% Similarity=-0.065 Sum_probs=31.4
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC------CCCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN------DLHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~------~l~~~dglIi~Gg 70 (250)
..|+++|..+..... +....+.+.+++.|.++......+....+.. .-.++|+|++.+.
T Consensus 132 ~~~vail~~d~~~g~------~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~ 196 (334)
T cd06356 132 GKKVYTIAADYNFGQ------ISAEWVRKIVEENGGEVVGEEFIPLDVSDFGSTIQKIQAAKPDFVMSILV 196 (334)
T ss_pred CCeEEEECCCchhhH------HHHHHHHHHHHHcCCEEEeeeecCCCchhHHHHHHHHHhcCCCEEEEecc
Confidence 357888875443221 1234567788888987753322211111100 0146899998764
No 423
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=29.23 E-value=1.4e+02 Score=21.25 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=24.5
Q ss_pred HHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEc
Q 025645 31 VFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVIS 68 (250)
Q Consensus 31 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~ 68 (250)
...+.+++.|.++++.-....+.++ ..+++|.++++
T Consensus 19 km~~~a~~~gi~~~i~a~~~~e~~~--~~~~~Dvill~ 54 (99)
T cd05565 19 ALNKGAKERGVPLEAAAGAYGSHYD--MIPDYDLVILA 54 (99)
T ss_pred HHHHHHHHCCCcEEEEEeeHHHHHH--hccCCCEEEEc
Confidence 3567889999998877655555443 45678955554
No 424
>PRK06242 flavodoxin; Provisional
Probab=29.16 E-value=1.8e+02 Score=21.58 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=9.6
Q ss_pred CCCCCcCEEEEcC
Q 025645 57 NDLHKYDGFVISG 69 (250)
Q Consensus 57 ~~l~~~dglIi~G 69 (250)
.++.++|.||+..
T Consensus 39 ~~~~~~d~ii~g~ 51 (150)
T PRK06242 39 EDLSEYDLIGFGS 51 (150)
T ss_pred ccHhHCCEEEEeC
Confidence 4577899887764
No 425
>PRK09267 flavodoxin FldA; Validated
Probab=29.15 E-value=2.6e+02 Score=21.37 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=10.2
Q ss_pred CCCCCcCEEEEcCC
Q 025645 57 NDLHKYDGFVISGS 70 (250)
Q Consensus 57 ~~l~~~dglIi~Gg 70 (250)
.++.++|+||+..+
T Consensus 42 ~~l~~~d~vi~g~p 55 (169)
T PRK09267 42 EDFEAYDLLILGIP 55 (169)
T ss_pred hhHhhCCEEEEEec
Confidence 35778999887754
No 426
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=29.13 E-value=1.4e+02 Score=21.33 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=29.6
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEc
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVIS 68 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~ 68 (250)
+||.+ .|+.+...- -......+.+++.|.++++.....++.+......++|.++++
T Consensus 2 kkILl-vCg~G~STS-----lla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~ 57 (104)
T PRK09590 2 KKALI-ICAAGMSSS-----MMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVS 57 (104)
T ss_pred cEEEE-ECCCchHHH-----HHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEC
Confidence 35544 477664220 012345678888999887755444333321122358866554
No 427
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=29.07 E-value=1.3e+02 Score=24.38 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=32.4
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCC
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGS 70 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg 70 (250)
|+++..+...++.... ..-+.+.+++.|.++.+.....+.....+ .-.++||+|+.+.
T Consensus 2 i~~i~~~~~~~~~~~i----~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (260)
T cd06286 2 IGVVLPYINHPYFSQL----VDGIEKAALKHGYKVVLLQTNYDKEKELEYLELLKTKQVDGLILCSR 64 (260)
T ss_pred EEEEeCCCCCchHHHH----HHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6777766555543322 23456677788988876543221100000 1246899999864
No 428
>PRK07236 hypothetical protein; Provisional
Probab=28.95 E-value=87 Score=27.71 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=27.1
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEE
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFR 47 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 47 (250)
|++|+.++|+|+..+..- -..+..|.+.|+++.++.
T Consensus 1 ~~~~~~~~ViIVGaG~aG-----------l~~A~~L~~~G~~v~v~E 36 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGG-----------LFAALLLRRAGWDVDVFE 36 (386)
T ss_pred CCCCCCCeEEEECCCHHH-----------HHHHHHHHhCCCCEEEEe
Confidence 889999999999765321 124567888999988876
No 429
>PF07380 Pneumo_M2: Pneumovirus M2 protein; InterPro: IPR009969 This family consists of several Pneumovirus M2 proteins. The M2-1 protein of respiratory syncytial virus (RSV) is a transcription processivity factor that is essential for virus replication [].
Probab=28.79 E-value=78 Score=21.50 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=34.0
Q ss_pred EEEcCCCceEEEEECCcEEEEecCCCCCHHHHHHHHHHHhcCCCccHHHHHHHHhhc
Q 025645 172 IGFSDKTGVEMFTIGDHILGIQGHPEYTKDILYNLIDRLLNNNSIEREFAENAKFGL 228 (250)
Q Consensus 172 la~s~~~~v~~~~~~~~~~g~QfHPE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (250)
+--++.|.|..+.+++-.+.-|+||....-.....++.+ -|.+++.++....-+
T Consensus 20 iLI~s~~~v~~~n~kn~L~~nqn~~~nh~ys~N~~fdeI---hWTsq~Lid~~q~fL 73 (89)
T PF07380_consen 20 ILITSECRVTMYNHKNTLYFNQNNYNNHMYSPNHMFDEI---HWTSQDLIDATQNFL 73 (89)
T ss_pred EEEeccceeEEEeccchhhhhccCCCccccccCccchhh---ccchHHHHHHHHHHH
Confidence 333456778889988888899999984322222223333 467777766665443
No 430
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=28.60 E-value=1.8e+02 Score=24.35 Aligned_cols=33 Identities=27% Similarity=0.194 Sum_probs=20.3
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
.++||||+.+. +. ......++.+.+.++|++.+
T Consensus 55 ~~vdgiIi~~~--~~-------~~~~~~l~~~~~~giPvV~~ 87 (302)
T TIGR02637 55 QKVDAIAISAN--DP-------DALVPALKKAMKRGIKVVTW 87 (302)
T ss_pred cCCCEEEEeCC--Ch-------HHHHHHHHHHHHCCCEEEEe
Confidence 47899999753 11 22334556666677877644
No 431
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=28.51 E-value=1.7e+02 Score=30.16 Aligned_cols=46 Identities=11% Similarity=-0.059 Sum_probs=25.6
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeec
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVE 50 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 50 (250)
..+||.||..+...--.-..++.......+.|++.|.++..+...+
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~np 598 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNP 598 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCc
Confidence 3568888876653100000011122345788999999988776443
No 432
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=28.38 E-value=1.1e+02 Score=24.82 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCceEEEEeec--CCCCC-CCCCCCcCEEEEc--CCCCCCCCCChh-----HHHHHHHHHHHHhcCCc--
Q 025645 30 NVFVAAFGEEGERWDLFRVVE--GDFPD-FNDLHKYDGFVIS--GSPYDAYGNDNW-----ILKLCFMLQTLDAMQKK-- 97 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~--~~~~~-~~~l~~~dglIi~--Gg~~~~~~~~~~-----~~~~~~~i~~~~~~~~P-- 97 (250)
+.+.+.|+..+.+++.-..-. ..+|. -+.|+.||+|||+ |+..-......| .+...++|+...+.+-=
T Consensus 35 d~Ll~~Lr~g~~dv~yMpAH~~q~~FPqtme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~likdyV~~GGGLL 114 (254)
T COG5426 35 DPLLKALRGGEYDVTYMPAHDAQEKFPQTMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIKDYVENGGGLL 114 (254)
T ss_pred hHHHHHHhCCCcceEEechHHHHHhcchhhhhhcccceEEEeecCCceeeccccceeecccCccHHHHHHHHHhcCCcEE
Confidence 567788888888776533111 12332 2457889999999 443322222222 35567888888876543
Q ss_pred EEEEehHHHHH
Q 025645 98 VLGICFGHQVL 108 (250)
Q Consensus 98 ilGIC~G~Qll 108 (250)
++|=-+.+|-|
T Consensus 115 MiGGY~SF~GI 125 (254)
T COG5426 115 MIGGYLSFQGI 125 (254)
T ss_pred EEccEEEEeee
Confidence 33444444443
No 433
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=28.11 E-value=84 Score=29.75 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=40.3
Q ss_pred ccceEEEEecC-CCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC----CCCCCCCCCcCEEEEcCCCCCC
Q 025645 5 EEKRYALFLAA-KDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD----FPDFNDLHKYDGFVISGSPYDA 74 (250)
Q Consensus 5 ~~~riail~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----~~~~~~l~~~dglIi~Gg~~~~ 74 (250)
+++|+.|++.. ..+...... |.......|.+++++++++...... +....++..|||||..||-+-.
T Consensus 178 r~~~lLV~iNP~gGkGka~~~---F~~~v~Pll~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDGl~ 249 (579)
T KOG1116|consen 178 RPRRLLVFINPFGGKGKAKKL---FKNHVEPLLSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDGLL 249 (579)
T ss_pred CCccEEEEECCCCCCccHHHH---HHhhhhhhhhhcCceEEEEEecCccHHHHHHHhhhccccceEEEecCCcCH
Confidence 45677776632 233332332 3334456788899998877543321 1223367899999999996643
No 434
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=28.09 E-value=80 Score=26.72 Aligned_cols=80 Identities=13% Similarity=-0.016 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCCceEEEEeec---CCCC----CCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 30 NVFVAAFGEEGERWDLFRVVE---GDFP----DFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~---~~~~----~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
..+.+.|++.|.++..+.... .+.. ....+.+||.||++...+ + ..+.++.+...-.+.|++.|.
T Consensus 31 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NA-V-------~~~~~~~~~~~~~~~~~~AVG 102 (266)
T PRK08811 31 APLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAA-V-------RAAHRLLPLQRPARAHWLSVG 102 (266)
T ss_pred HHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHH-H-------HHHHHHhcccCccCCeEEEEC
Confidence 457889999999887654321 1100 012456899999995321 1 111111111112367888887
Q ss_pred hHHHHHHHHcCceEE
Q 025645 103 FGHQVLCRALGGKVG 117 (250)
Q Consensus 103 ~G~Qlla~a~gg~v~ 117 (250)
-+=.-....+|....
T Consensus 103 ~~TA~aL~~~G~~~~ 117 (266)
T PRK08811 103 EGTARALQACGIDEV 117 (266)
T ss_pred HHHHHHHHHcCCCce
Confidence 776666666665543
No 435
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=28.01 E-value=1.8e+02 Score=24.42 Aligned_cols=81 Identities=15% Similarity=0.027 Sum_probs=43.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-C-CCCCCCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-F-PDFNDLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~-~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
..||-|+..+... .. ...+...|...|..+.... +.. . .....+..=|.+|+-.-.+. ...
T Consensus 128 a~~I~i~G~G~s~--~~------A~~~~~~l~~~g~~~~~~~--d~~~~~~~~~~~~~~Dv~I~iS~sg~-------~~~ 190 (278)
T PRK11557 128 ARRIILTGIGASG--LV------AQNFAWKLMKIGINAVAER--DMHALLATVQALSPDDLLLAISYSGE-------RRE 190 (278)
T ss_pred CCeEEEEecChhH--HH------HHHHHHHHhhCCCeEEEcC--ChHHHHHHHHhCCCCCEEEEEcCCCC-------CHH
Confidence 4567777655322 11 2335566777787664321 110 0 00112334465555532222 145
Q ss_pred HHHHHHHHHhcCCcEEEEeh
Q 025645 84 LCFMLQTLDAMQKKVLGICF 103 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~ 103 (250)
..+.++.+.+.|.||++|+-
T Consensus 191 ~~~~~~~ak~~ga~iI~IT~ 210 (278)
T PRK11557 191 LNLAADEALRVGAKVLAITG 210 (278)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 67778888888999998873
No 436
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=27.93 E-value=1.3e+02 Score=26.04 Aligned_cols=77 Identities=19% Similarity=0.164 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCCceEEEEeecC-CCC---CCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE--
Q 025645 28 YFNVFVAAFGEEGERWDLFRVVEG-DFP---DFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI-- 101 (250)
Q Consensus 28 ~~~~~~~~l~~~g~~~~~~~~~~~-~~~---~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI-- 101 (250)
+.......|++.|.+...+.+... +.. ......++|.||..||-+.. .+.+..+...+.|.|||
T Consensus 21 ~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv----------~evingl~~~~~~~LgilP 90 (301)
T COG1597 21 LLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTV----------NEVANGLAGTDDPPLGILP 90 (301)
T ss_pred HHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchH----------HHHHHHHhcCCCCceEEec
Confidence 345567889999999887765443 211 01112479999999995543 23444455555554555
Q ss_pred ehHHHHHHHHcCc
Q 025645 102 CFGHQVLCRALGG 114 (250)
Q Consensus 102 C~G~Qlla~a~gg 114 (250)
|.=+-.+|+++|.
T Consensus 91 ~GT~NdfAr~Lgi 103 (301)
T COG1597 91 GGTANDFARALGI 103 (301)
T ss_pred CCchHHHHHHcCC
Confidence 3334445555554
No 437
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.76 E-value=2.7e+02 Score=25.70 Aligned_cols=33 Identities=6% Similarity=0.048 Sum_probs=21.5
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEE
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFR 47 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 47 (250)
+..++|+|+..+..- -.++++|.+.|.++....
T Consensus 5 ~~~~~i~v~G~G~sG-----------~s~a~~L~~~G~~v~~~D 37 (498)
T PRK02006 5 LQGPMVLVLGLGESG-----------LAMARWCARHGARLRVAD 37 (498)
T ss_pred cCCCEEEEEeecHhH-----------HHHHHHHHHCCCEEEEEc
Confidence 445688888765321 225788888888776554
No 438
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=27.56 E-value=4.4e+02 Score=24.02 Aligned_cols=71 Identities=21% Similarity=0.348 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCC-C-CCCChhHHHHHHHHHHHHhc----CCcEEE
Q 025645 27 GYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYD-A-YGNDNWILKLCFMLQTLDAM----QKKVLG 100 (250)
Q Consensus 27 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~-~-~~~~~~~~~~~~~i~~~~~~----~~PilG 100 (250)
.|...++..+++.|.++.+++ .-| +.|.+-. + .=...|..++.+.++...+. .+-..|
T Consensus 141 ~YVr~lv~~a~~~G~r~VVfN--------------~RG--~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~a~l~avG 204 (409)
T KOG1838|consen 141 SYVRHLVHEAQRKGYRVVVFN--------------HRG--LGGSKLTTPRLFTAGWTEDLREVVNHIKKRYPQAPLFAVG 204 (409)
T ss_pred HHHHHHHHHHHhCCcEEEEEC--------------CCC--CCCCccCCCceeecCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 467778888899998887775 122 2222221 1 01124456667777666542 334567
Q ss_pred EehHHHHHHHHcC
Q 025645 101 ICFGHQVLCRALG 113 (250)
Q Consensus 101 IC~G~Qlla~a~g 113 (250)
+-+|.-+|..+||
T Consensus 205 ~S~Gg~iL~nYLG 217 (409)
T KOG1838|consen 205 FSMGGNILTNYLG 217 (409)
T ss_pred ecchHHHHHHHhh
Confidence 7788889999987
No 439
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=27.42 E-value=62 Score=25.94 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=28.5
Q ss_pred CcCEEEEcCCCCCCCCC-----ChhHHHHHHHHHHHHhcCCc-EEEEehHHHHHH
Q 025645 61 KYDGFVISGSPYDAYGN-----DNWILKLCFMLQTLDAMQKK-VLGICFGHQVLC 109 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~-----~~~~~~~~~~i~~~~~~~~P-ilGIC~G~Qlla 109 (250)
.+|.+|+||-..+.... ..|-+....--.......+| .+|+|+--|++.
T Consensus 128 ~lDLiivPGvAFd~~g~RlGhGkGYYD~flkry~~~~~~~kp~~vgL~l~EQI~~ 182 (200)
T KOG3093|consen 128 PLDLIIVPGVAFDRKGARLGHGKGYYDDFLKRYQIHAPEQKPLLVGLCLKEQILS 182 (200)
T ss_pred cceEEEecccccchhhhhccCCcchHHHHHHHHHHhccccCchhhhhhhhHhhcc
Confidence 48999999976654322 12223322222222233444 789999999986
No 440
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=27.23 E-value=2.4e+02 Score=24.52 Aligned_cols=82 Identities=15% Similarity=-0.003 Sum_probs=42.6
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC----C--CCCCcCEEEEcCCCCCCCCCChh
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF----N--DLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~----~--~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
+|++++..+++... +....+.+.+++.|.++..........++. . .-.++|+|++.+....
T Consensus 135 k~v~~l~~d~~~g~------~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~s~~v~~l~~~~pDav~~~~~~~~------- 201 (359)
T TIGR03407 135 KRFFLLGSDYVFPR------TANKIIKAYLKSLGGTVVGEDYTPLGHTDFQTIINKIKAFKPDVVFNTLNGDS------- 201 (359)
T ss_pred ceEEEecCccHHHH------HHHHHHHHHHHHcCCEEEeeEEecCChHhHHHHHHHHHHhCCCEEEEeccCCC-------
Confidence 68888864432221 123456788899998875332222111110 0 1246898887543221
Q ss_pred HHHHHHHHHHHHhcC-----CcEEEEehH
Q 025645 81 ILKLCFMLQTLDAMQ-----KKVLGICFG 104 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~-----~PilGIC~G 104 (250)
...+++.+.+.+ +|++|.+.+
T Consensus 202 ---~~~~~~~~~~~G~~~~~~~~~~~~~~ 227 (359)
T TIGR03407 202 ---NVAFFKQLKNAGITAKDVPVVSFSVA 227 (359)
T ss_pred ---HHHHHHHHHHcCCCccCCcEEEeecC
Confidence 123455555554 467887654
No 441
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=27.22 E-value=1.1e+02 Score=27.31 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=26.7
Q ss_pred CCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 60 HKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
..++||||-| |.++. -....+.++++.+.++||.=+
T Consensus 253 ~g~~GiVie~~G~G~~------~~~~~~~i~~~~~~gi~VV~s 289 (351)
T COG0252 253 SGAKGLVLEGTGSGNV------TPALIESIERASKRGIPVVYS 289 (351)
T ss_pred cCCCEEEEEEECCCCC------ChHHHHHHHHHHHCCCeEEEE
Confidence 5789999997 44433 256777888888889988754
No 442
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.08 E-value=4e+02 Score=24.08 Aligned_cols=35 Identities=14% Similarity=0.034 Sum_probs=19.4
Q ss_pred ccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEe
Q 025645 3 LMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRV 48 (250)
Q Consensus 3 ~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 48 (250)
.+..++++|+..+. .. ...++.|.+.|.++..+..
T Consensus 2 ~~~~k~v~iiG~g~-~G----------~~~A~~l~~~G~~V~~~d~ 36 (450)
T PRK14106 2 ELKGKKVLVVGAGV-SG----------LALAKFLKKLGAKVILTDE 36 (450)
T ss_pred CcCCCEEEEECCCH-HH----------HHHHHHHHHCCCEEEEEeC
Confidence 34556777775443 11 1245666777777665543
No 443
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=27.03 E-value=95 Score=28.39 Aligned_cols=44 Identities=9% Similarity=0.186 Sum_probs=26.1
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHH
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQ 106 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q 106 (250)
.++|.|||.=|.++. +| -|.-....+++......+||+ ...||.
T Consensus 186 ~~~dviii~RGGGs~-eD-L~~Fn~e~~~rai~~~~~Pvi-s~iGHe 229 (432)
T TIGR00237 186 NECDVLIVGRGGGSL-ED-LWSFNDEKVARAIFLSKIPII-SAVGHE 229 (432)
T ss_pred CCCCEEEEecCCCCH-HH-hhhcCcHHHHHHHHcCCCCEE-EecCcC
Confidence 348999999444443 22 223334456777777889986 234444
No 444
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=26.77 E-value=1.3e+02 Score=23.44 Aligned_cols=23 Identities=22% Similarity=0.021 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEehH
Q 025645 82 LKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGIC~G 104 (250)
..+.+.++.+.+.++||.+..-|
T Consensus 58 ~~~~~~i~~~~~~~kpVia~v~G 80 (177)
T cd07014 58 EVIRAELAAARAAGKPVVASGGG 80 (177)
T ss_pred HHHHHHHHHHHhCCCCEEEEECC
Confidence 34555677776779999965543
No 445
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=26.70 E-value=3.2e+02 Score=25.15 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=25.5
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEE
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVL 99 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pil 99 (250)
..++|.||+.=|.+|.. +-|.-..-.++|.+.+..+||.
T Consensus 191 ~~~~DvlIVaRGGGSiE--DLW~FNdE~vaRAi~~s~iPvI 229 (440)
T COG1570 191 RGDVDVLIVARGGGSIE--DLWAFNDEIVARAIAASRIPVI 229 (440)
T ss_pred cCCCCEEEEecCcchHH--HHhccChHHHHHHHHhCCCCeE
Confidence 45699999995545542 2243344456777778888876
No 446
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.41 E-value=76 Score=26.14 Aligned_cols=33 Identities=18% Similarity=0.052 Sum_probs=20.5
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
.++||||+.+...+ ...+.++.+.+.++|+.-+
T Consensus 59 ~~vDgiii~~~~~~---------~~~~~i~~~~~~gIpvV~~ 91 (274)
T cd06311 59 RKIDALVILPFESA---------PLTQPVAKAKKAGIFVVVV 91 (274)
T ss_pred cCCCEEEEeCCCch---------hhHHHHHHHHHCCCeEEEE
Confidence 46899999864211 1223456666778887654
No 447
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.39 E-value=1.8e+02 Score=26.90 Aligned_cols=13 Identities=23% Similarity=0.148 Sum_probs=9.7
Q ss_pred CCCcCEEEEcCCC
Q 025645 59 LHKYDGFVISGSP 71 (250)
Q Consensus 59 l~~~dglIi~Gg~ 71 (250)
+.++|.||.+.|-
T Consensus 68 l~~~D~VV~SpGi 80 (488)
T PRK03369 68 IADYALVVTSPGF 80 (488)
T ss_pred hhcCCEEEECCCC
Confidence 4568989988763
No 448
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=26.37 E-value=3.6e+02 Score=21.98 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCCceEEEEee---cCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH
Q 025645 30 NVFVAAFGEEGERWDLFRVV---EGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~---~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
..|+..|.+.|.+.-++.+. .++.| .+..=|.||.--+++.. ..+..++..+.+.+.|+.+|.--
T Consensus 55 kk~Aa~L~s~G~~a~fv~p~ea~hgdlg---~i~~~DvviaiS~SGeT-------~el~~~~~~aK~~g~~liaiT~~ 122 (202)
T COG0794 55 KKFAARLASTGTPAFFVGPAEALHGDLG---MITPGDVVIAISGSGET-------KELLNLAPKAKRLGAKLIAITSN 122 (202)
T ss_pred HHHHHHHHccCCceEEecCchhccCCcc---CCCCCCEEEEEeCCCcH-------HHHHHHHHHHHHcCCcEEEEeCC
Confidence 45778889999888766533 22333 24445766655443332 46777888888889999998843
No 449
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.33 E-value=3e+02 Score=23.46 Aligned_cols=80 Identities=16% Similarity=0.071 Sum_probs=42.6
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC------CCCCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN------DLHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~------~l~~~dglIi~Gg~~~~~~~~~ 79 (250)
.++|+++..+.+... .....+.+.+++.|.++...........+.. .-.+.|+|++.|.+..
T Consensus 135 ~~~v~ii~~~~~~g~------~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~------ 202 (340)
T cd06349 135 FKKVAILSVNTDWGR------TSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILISYYND------ 202 (340)
T ss_pred CcEEEEEecCChHhH------HHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEccccch------
Confidence 357898876654321 1234567788888988764332221111100 1246799988875332
Q ss_pred hHHHHHHHHHHHHhc--CCcEEEE
Q 025645 80 WILKLCFMLQTLDAM--QKKVLGI 101 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~--~~PilGI 101 (250)
...+++.+.+. ..|++|.
T Consensus 203 ----~~~~~~~~~~~g~~~~~~~~ 222 (340)
T cd06349 203 ----GAPIARQARAVGLDIPVVAS 222 (340)
T ss_pred ----HHHHHHHHHHcCCCCcEEcc
Confidence 23355555443 3466653
No 450
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=26.25 E-value=1.2e+02 Score=24.02 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=21.8
Q ss_pred CCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 58 DLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 58 ~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
++...|-|+|-.-..+ .....++.+++.+.++|+.+||
T Consensus 78 ~lt~~DRVllfs~~~~-------~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 78 ELTETDRVLLFSPFST-------DEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp ---TT-EEEEEES-S---------HHHHHHHHHHHHHT--EEEEE
T ss_pred cccccceEEEEeCCCC-------CHHHHHHHHHHHHCCCCEEEEE
Confidence 3556677776632111 1456778888999999999999
No 451
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=26.08 E-value=2.6e+02 Score=27.84 Aligned_cols=55 Identities=13% Similarity=0.030 Sum_probs=30.1
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC----C----------CCCCCCCCcCEEEEcCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD----F----------PDFNDLHKYDGFVISGSP 71 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----~----------~~~~~l~~~dglIi~Gg~ 71 (250)
++|.|+..+..- ...++++|.+.|+++......... + ...+.+.++|.||++.|-
T Consensus 5 ~~i~viG~G~sG----------~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI 73 (809)
T PRK14573 5 LFYHFIGIGGIG----------MSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSI 73 (809)
T ss_pred ceEEEEEecHHh----------HHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCc
Confidence 367777654211 123567888888887665432110 0 011224568888888763
No 452
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=25.77 E-value=2.7e+02 Score=23.89 Aligned_cols=82 Identities=11% Similarity=-0.021 Sum_probs=41.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhc--CCCceEEEEeecCCC-CCCC----C--CCCcCEEEEcCCCCCCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE--EGERWDLFRVVEGDF-PDFN----D--LHKYDGFVISGSPYDAYG 76 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~~~~~~~~~-~~~~----~--l~~~dglIi~Gg~~~~~~ 76 (250)
.+|++|+..+... -. +....+.+.+++ .|.++.......... ++.. . -.+.|.|++.+.+.+
T Consensus 143 ~k~v~i~~~~~~~--g~----~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~~--- 213 (342)
T cd06329 143 GKKVYLINQDYSW--GQ----DVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGND--- 213 (342)
T ss_pred CceEEEEeCChHH--HH----HHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCch---
Confidence 4678888654321 11 123456778888 787764322222111 1100 0 146799998774322
Q ss_pred CChhHHHHHHHHHHHHhc--CCcEEEEeh
Q 025645 77 NDNWILKLCFMLQTLDAM--QKKVLGICF 103 (250)
Q Consensus 77 ~~~~~~~~~~~i~~~~~~--~~PilGIC~ 103 (250)
...+++.+.+. ..|+++...
T Consensus 214 -------~~~~~~~~~~~g~~~~~~~~~~ 235 (342)
T cd06329 214 -------LLLLVKQAADAGLKLPFYTPYL 235 (342)
T ss_pred -------HHHHHHHHHHcCCCceEEeccc
Confidence 12345555553 356666543
No 453
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=25.77 E-value=3.3e+02 Score=23.04 Aligned_cols=59 Identities=17% Similarity=0.030 Sum_probs=29.3
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC----C--CCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN----D--LHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~----~--l~~~dglIi~Gg 70 (250)
.++|+++..+.. +-.. ....+.+.+++.|.++...........+.. . -.++|+|++.+.
T Consensus 134 ~~~v~~l~~~~~--~g~~----~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~~~~ 198 (336)
T cd06360 134 YKKVVTVAWDYA--FGYE----VVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVFFA 198 (336)
T ss_pred CCeEEEEeccch--hhHH----HHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEEecc
Confidence 357888864332 1111 123466778888887753322221111100 0 135788888654
No 454
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=25.28 E-value=1.3e+02 Score=27.39 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=26.1
Q ss_pred CCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 60 HKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
.+++||||-| |.++.. ..+.+.++++.+.++||.-+
T Consensus 298 ~g~~GiVleg~G~G~vp------~~~~~~l~~a~~~GipVV~t 334 (404)
T TIGR02153 298 KGYKGIVIEGTGLGHVS------EDWIPSIKRATDDGVPVVMT 334 (404)
T ss_pred CCCCEEEEeeECCCCCC------HHHHHHHHHHHHCCCEEEEe
Confidence 3589999997 555553 24667778888888988765
No 455
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=25.24 E-value=1.9e+02 Score=24.43 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEe
Q 025645 82 LKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGIC 102 (250)
....++++.+.+.|.|+++|+
T Consensus 201 ~~~~~~~~~ak~~g~~ii~IT 221 (292)
T PRK11337 201 SDVIEAVELAKKNGAKIICIT 221 (292)
T ss_pred HHHHHHHHHHHHCCCeEEEEe
Confidence 356677888888889998887
No 456
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.08 E-value=1.1e+02 Score=25.02 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCC--CC-CCC--CCcCEEEEcCC
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFP--DF-NDL--HKYDGFVISGS 70 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~--~~-~~l--~~~dglIi~Gg 70 (250)
.-+.+.+++.|.++.+......... .. ..+ .++||+|+.++
T Consensus 24 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 24 RGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecC
Confidence 3355677888888765432111000 00 001 35899999854
No 457
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=25.07 E-value=2.9e+02 Score=21.03 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeecCCC--C-------CCCCCCCcCEEEEcCCCCCCCC-C---ChhHHHHHHHHHHHH
Q 025645 26 GGYFNVFVAAFGEEGERWDLFRVVEGDF--P-------DFNDLHKYDGFVISGSPYDAYG-N---DNWILKLCFMLQTLD 92 (250)
Q Consensus 26 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~--~-------~~~~l~~~dglIi~Gg~~~~~~-~---~~~~~~~~~~i~~~~ 92 (250)
..|...+.+.|.+....+.++...-+.. . ......++|.|||.-|..+... . ..+...+..+++.+.
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~~N~g~~G~~~~~~~~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~ 102 (185)
T cd01832 23 RGWADRLAAALAAADPGIEYANLAVRGRRTAQILAEQLPAALALRPDLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLR 102 (185)
T ss_pred ccHHHHHHHHhcccCCCceEeeccCCcchHHHHHHHHHHHHHhcCCCEEEEeccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 4577777777766444444443322110 0 0001246899999877655432 1 133455666666665
Q ss_pred hcCCcEEEE
Q 025645 93 AMQKKVLGI 101 (250)
Q Consensus 93 ~~~~PilGI 101 (250)
..+.+|+-+
T Consensus 103 ~~~~~vil~ 111 (185)
T cd01832 103 AAGARVVVF 111 (185)
T ss_pred hCCCEEEEe
Confidence 444444443
No 458
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=25.03 E-value=4e+02 Score=22.77 Aligned_cols=60 Identities=18% Similarity=0.014 Sum_probs=31.6
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC------CCCCcCEEEEcCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN------DLHKYDGFVISGSP 71 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~------~l~~~dglIi~Gg~ 71 (250)
.+||+++..+..... .....+.+.+++.|.++...........+.. .-.+.|+|++.+.+
T Consensus 144 ~~~va~l~~~~~~g~------~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~ 209 (344)
T cd06345 144 FKTAAIVAEDAAWGK------GIDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGFSG 209 (344)
T ss_pred CceEEEEecCchhhh------HHHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHhcCCCEEEEeecC
Confidence 458998875543221 2335567788888877654322211111100 01357888887643
No 459
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=24.76 E-value=1.3e+02 Score=27.43 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=26.2
Q ss_pred CCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 60 HKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
.+++||||-| |.++.. ..+.+.++++.+.++||.=+
T Consensus 311 ~g~~GiVleg~G~Gnvp------~~~~~~l~~a~~~Gi~VV~t 347 (419)
T PRK04183 311 KGYKGIVIEGTGLGHVS------TDLIPSIKRATDDGIPVVMT 347 (419)
T ss_pred CCCCEEEEEeECCCCCC------HHHHHHHHHHHHCCCEEEEe
Confidence 4589999997 555553 24667778888888988765
No 460
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=24.66 E-value=1.1e+02 Score=26.53 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=26.1
Q ss_pred CCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 60 HKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 60 ~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
..++|||+-| |.++. -..+.+.++++.+.++||+-+-
T Consensus 223 ~~~~GlVl~~~G~Gn~------~~~~~~~l~~a~~~gipVV~~s 260 (313)
T PF00710_consen 223 AGAKGLVLEGYGAGNV------PPALLEALARAVERGIPVVVTS 260 (313)
T ss_dssp TT-SEEEEEEBTTTBS------SHHHHHHHHHHHHTTSEEEEEE
T ss_pred ccCCEEEEeccCCCCC------CHHHHHHHHHHHhcCceEEEec
Confidence 5679999986 44442 2567778888888899987663
No 461
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=24.54 E-value=3.4e+02 Score=21.05 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=25.9
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEeh
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICF 103 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~ 103 (250)
+.++|.|++..+-... .. .....++++.+...++-++|+|.
T Consensus 37 ~~~yD~i~lG~w~d~G-~~---d~~~~~fl~~l~~KkV~lF~T~G 77 (160)
T PF12641_consen 37 LEDYDLIFLGFWIDKG-TP---DKDMKEFLKKLKGKKVALFGTAG 77 (160)
T ss_pred CCCCCEEEEEcCccCC-CC---CHHHHHHHHHccCCeEEEEEecC
Confidence 7789999888664322 11 14566777776555566777763
No 462
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.20 E-value=1.8e+02 Score=23.57 Aligned_cols=58 Identities=7% Similarity=0.079 Sum_probs=31.7
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCC
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGS 70 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg 70 (250)
|||+..+...+++... ..-+.+.+++.|..+.++....+...... .-.++||+|+.+.
T Consensus 2 i~vi~~~~~~~~~~~~----~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06290 2 IGVLTQDFASPFYGRI----LKGMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGG 64 (265)
T ss_pred EEEEECCCCCchHHHH----HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 7888766555543322 23345677888988766543211100000 0146899999864
No 463
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=24.19 E-value=1.6e+02 Score=21.53 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCC----CCCCCCc-CEEEEcCCC
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPD----FNDLHKY-DGFVISGSP 71 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~----~~~l~~~-dglIi~Gg~ 71 (250)
..+.+.++..+.++.++.+...+... ...+.++ |.||+.||-
T Consensus 18 ~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGD 64 (130)
T PF00781_consen 18 KKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGD 64 (130)
T ss_dssp HHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESH
T ss_pred HHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCc
Confidence 34677888888888776654321100 0123455 899999983
No 464
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=24.18 E-value=1.4e+02 Score=26.01 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=26.3
Q ss_pred CCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 60 HKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
.+++||||-| |.++.. ..+.+.++++.++++||.-+
T Consensus 232 ~g~~GiVl~~~G~Gn~p------~~~~~~l~~a~~~gi~VV~~ 268 (323)
T cd00411 232 AGYKGIVLAGYGAGNVP------TDLIDELEEAAERGVVVVNS 268 (323)
T ss_pred CCCCEEEEEeECCCCCC------HHHHHHHHHHHHCCCEEEEe
Confidence 3579999987 555543 24667778888889998876
No 465
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=23.79 E-value=1.7e+02 Score=25.22 Aligned_cols=44 Identities=9% Similarity=-0.003 Sum_probs=23.9
Q ss_pred CCcCEEEEcCCCCCCCC-CChhHHHHHHHHHHHHhcCCcEE-EEeh
Q 025645 60 HKYDGFVISGSPYDAYG-NDNWILKLCFMLQTLDAMQKKVL-GICF 103 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~-~~~~~~~~~~~i~~~~~~~~Pil-GIC~ 103 (250)
.++|||++.|+.+.... .......+.+.+.+....++|++ ||+.
T Consensus 40 ~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~ 85 (303)
T PRK03620 40 YGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG 85 (303)
T ss_pred cCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 36899999997654321 11112233333333344568876 7763
No 466
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.77 E-value=5.4e+02 Score=23.18 Aligned_cols=36 Identities=14% Similarity=0.033 Sum_probs=21.6
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEE
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFR 47 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 47 (250)
|..+..++|.|+..+..- -.-.++|.+.|.++...+
T Consensus 1 ~~~~~~~~i~v~G~G~sG-----------~s~~~~l~~~G~~v~~~D 36 (438)
T PRK03806 1 MADYQGKKVVIIGLGLTG-----------LSCVDFFLARGVTPRVID 36 (438)
T ss_pred CcccCCCEEEEEeeCHHH-----------HHHHHHHHHCCCeEEEEc
Confidence 444555788888755321 112357888888776655
No 467
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=23.72 E-value=2.2e+02 Score=21.14 Aligned_cols=42 Identities=19% Similarity=0.115 Sum_probs=23.1
Q ss_pred CEEEEcCCCCCCCCCChh-HHHHHHHHHHHHhcCCcEEEEehH
Q 025645 63 DGFVISGSPYDAYGNDNW-ILKLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 63 dglIi~Gg~~~~~~~~~~-~~~~~~~i~~~~~~~~PilGIC~G 104 (250)
|++|+.||........+. ..++...++.+.+...|.+=+|.|
T Consensus 1 d~IvVLG~~~~~~~~~~~~~~R~~~a~~l~~~~~~~~ii~sGg 43 (150)
T cd06259 1 DAIVVLGGGVNGDGPSPILAERLDAAAELYRAGPAPKLIVSGG 43 (150)
T ss_pred CEEEEeCCccCCCCCChHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 678888876554322221 233444444444555677777766
No 468
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=23.54 E-value=1.9e+02 Score=28.20 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=32.7
Q ss_pred ccceEEEEecCCCC--hhHHHhhCCHHHHHHHHHhc----C-CCceEEEEeecCCCCC----CCC---CCCcCEEEEcCC
Q 025645 5 EEKRYALFLAAKDS--DYVLKVYGGYFNVFVAAFGE----E-GERWDLFRVVEGDFPD----FND---LHKYDGFVISGS 70 (250)
Q Consensus 5 ~~~riail~~~~~~--~~~~~~~~~~~~~~~~~l~~----~-g~~~~~~~~~~~~~~~----~~~---l~~~dglIi~Gg 70 (250)
..+|++||..+... ....+.. ...+.+++++ . |.++..+.+..++... ... ...+|.||.+||
T Consensus 457 ~~~rvaIIt~sde~~~~~~~D~s---g~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItTGG 533 (659)
T PLN02699 457 PEVKVAILTVSDTVSSGAGPDRS---GPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTLGG 533 (659)
T ss_pred CCcEEEEEEECCcccCCCccccc---chHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 45789999866531 1101110 1122334433 3 7777666554433210 001 246899999998
Q ss_pred CC
Q 025645 71 PY 72 (250)
Q Consensus 71 ~~ 72 (250)
.+
T Consensus 534 ts 535 (659)
T PLN02699 534 TG 535 (659)
T ss_pred cc
Confidence 54
No 469
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=23.45 E-value=2.4e+02 Score=25.05 Aligned_cols=67 Identities=15% Similarity=0.055 Sum_probs=36.1
Q ss_pred HHHHHhcCCCceEEEEee-cC-CCCCCCCCC-------CcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcE
Q 025645 32 FVAAFGEEGERWDLFRVV-EG-DFPDFNDLH-------KYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKV 98 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~-~~-~~~~~~~l~-------~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pi 98 (250)
+...++..|.++..+... .+ .-++.+.++ .-..+++...|.++....--.+...++++.+.+.+..|
T Consensus 133 ~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~i 208 (396)
T PRK09257 133 HRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIP 208 (396)
T ss_pred HHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEE
Confidence 345666778888776642 11 112222221 12567777777777554322345566666666666554
No 470
>PRK06348 aspartate aminotransferase; Provisional
Probab=23.42 E-value=3.7e+02 Score=23.63 Aligned_cols=65 Identities=14% Similarity=0.092 Sum_probs=33.0
Q ss_pred HHHHhcCCCceEEEEeec-CCC-CCCCCC-----CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcE
Q 025645 33 VAAFGEEGERWDLFRVVE-GDF-PDFNDL-----HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKV 98 (250)
Q Consensus 33 ~~~l~~~g~~~~~~~~~~-~~~-~~~~~l-----~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pi 98 (250)
...++..|.++..+.... ..+ .+.+.+ .+.+.|+++ .|.++....--.+...++++.+.+.++.|
T Consensus 127 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~i 198 (384)
T PRK06348 127 KDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILN-SPNNPTGAVFSKETLEEIAKIAIEYDLFI 198 (384)
T ss_pred HHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCeEE
Confidence 445566677766654422 111 121222 345777776 67666444322345556666665555443
No 471
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=23.39 E-value=2.2e+02 Score=22.19 Aligned_cols=95 Identities=15% Similarity=0.192 Sum_probs=48.9
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-CCCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-NDLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
|--+||+|--|-.-..+ ...|.+.|++.|.++.-+-...+..+.. -.+.+-+- +-+|. ..+ ...|-.
T Consensus 53 mgykkiGiAfCiGL~~E--------A~~~~~iL~~~gFev~sV~CKvg~i~K~~igi~~~~k-~~~~~-~e~-mCNPi~- 120 (157)
T PF08901_consen 53 MGYKKIGIAFCIGLRKE--------ARILAKILEANGFEVYSVCCKVGGIDKEEIGIPEEDK-IKPGT-FEA-MCNPIL- 120 (157)
T ss_pred cCCCeeeehhhHhHHHH--------HHHHHHHHHHCCCEEEEEEecCCCccHHHcCCchhhc-cCCCC-CCc-CcCHHH-
Confidence 33467888765443322 2457889999998876655444443221 01122222 23332 222 223322
Q ss_pred HHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 83 KLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
..+++.+....=-=++|.|.||=.|..-
T Consensus 121 -QA~~LN~~~TdlNI~lGLCVGHDsLF~K 148 (157)
T PF08901_consen 121 -QAKLLNEAGTDLNIILGLCVGHDSLFIK 148 (157)
T ss_pred -HHHHHhhcCCceeEEeeehhchHHHHHH
Confidence 2233443322223589999999988753
No 472
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=23.34 E-value=67 Score=25.69 Aligned_cols=33 Identities=12% Similarity=0.020 Sum_probs=20.8
Q ss_pred HHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEc
Q 025645 32 FVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVIS 68 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~ 68 (250)
-.+..++.|.++.+....+ -.+.+++.|-||.+
T Consensus 48 ~~~~~~~~~~~~~v~~ttd----~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 48 ARRMVEEAGADLKVEATTD----RREALEGADFVINQ 80 (183)
T ss_dssp HHHHHHHCTTSSEEEEESS----HHHHHTTESEEEE-
T ss_pred HHHHHHhcCCCeEEEEeCC----HHHHhCCCCEEEEE
Confidence 3466788888887654221 12346788988887
No 473
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=23.22 E-value=5.2e+02 Score=25.71 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=29.2
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeec
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVE 50 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 50 (250)
++++||+||--+...+.-.+.- ......+.|.+.|.++..+.+..
T Consensus 449 ~~~~~i~vl~GG~S~E~~vSl~--s~~~v~~al~~~~~~v~~~~i~~ 493 (809)
T PRK14573 449 PKKLSLGLVCGGKSCEHDISLL--SAKNIAKYLSPEFYDVSYFLINR 493 (809)
T ss_pred CCCcEEEEEECCCCCchHHHHH--hHHHHHHhhcccCcEEEEEEECC
Confidence 3467899998666655433221 12345678888999988776554
No 474
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=23.22 E-value=1.4e+02 Score=26.41 Aligned_cols=41 Identities=22% Similarity=0.158 Sum_probs=29.4
Q ss_pred EEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHH
Q 025645 64 GFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLC 109 (250)
Q Consensus 64 glIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla 109 (250)
||+.+||+.... -..+..+++.+...+.-++|+..|..-|.
T Consensus 4 ~Il~sGG~apG~-----N~~i~~~v~~~~~~g~~v~G~~~G~~GL~ 44 (338)
T cd00363 4 GVLTSGGDAPGM-----NAAIRGVVRSAIAEGLEVYGIYEGYAGLV 44 (338)
T ss_pred EEEccCCCchhH-----HHHHHHHHHHHHHCCCEEEEEecChHHhC
Confidence 466667765432 23456677778778899999999998664
No 475
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=23.20 E-value=3.5e+02 Score=20.82 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=20.5
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEee
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVV 49 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 49 (250)
||.+|..+....-... ...+.+.+.+++.|.+++.+.+.
T Consensus 1 kil~I~gS~r~~S~t~---~l~~~~~~~l~~~~~~~~~idl~ 39 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSS---ALLRHVREALQEQGVEVDHLSVR 39 (171)
T ss_pred CEEEEECCCCCCChHH---HHHHHHHHHHHHCCCeEEEEEec
Confidence 4677766554321000 01123455666678888777654
No 476
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.02 E-value=5.7e+02 Score=23.13 Aligned_cols=13 Identities=23% Similarity=0.038 Sum_probs=9.1
Q ss_pred CCCcCEEEEcCCC
Q 025645 59 LHKYDGFVISGSP 71 (250)
Q Consensus 59 l~~~dglIi~Gg~ 71 (250)
+.++|.||++.|-
T Consensus 66 ~~~~d~vV~SpgI 78 (438)
T PRK04663 66 LLEADLVVTNPGI 78 (438)
T ss_pred hccCCEEEECCCC
Confidence 4567888887764
No 477
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=22.90 E-value=3.4e+02 Score=24.03 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=35.7
Q ss_pred HHHHhcCCCceEEEEeecC-CC-CCCCCC-----CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcE
Q 025645 33 VAAFGEEGERWDLFRVVEG-DF-PDFNDL-----HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKV 98 (250)
Q Consensus 33 ~~~l~~~g~~~~~~~~~~~-~~-~~~~~l-----~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pi 98 (250)
...++..|.++..+.+... .+ ++.+.+ .+..+++++ .|.++....--...+.++++.+.+.++.|
T Consensus 131 ~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~i 202 (396)
T PRK09147 131 EGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVC-SPGNPTGAVLPLDDWKKLFALSDRYGFVI 202 (396)
T ss_pred HHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEc-CCCCCcCccCCHHHHHHHHHHHHHcCeEE
Confidence 4456667888777665422 11 222222 256788877 77777544322345566666666655544
No 478
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=22.77 E-value=1e+02 Score=27.06 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=23.5
Q ss_pred CcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 61 KYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
.+|.||+.+-.. ....|+++...++|+.|||
T Consensus 152 ~Pd~viv~d~~~-----------e~~AI~EA~kl~IPvIaiv 182 (326)
T PRK12311 152 LPDLLFVIDTNK-----------EDIAIQEAQRLGIPVAAIV 182 (326)
T ss_pred CCCEEEEeCCcc-----------chHHHHHHHHcCCCEEEEe
Confidence 478888886322 2346788889999999999
No 479
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=22.45 E-value=2e+02 Score=26.17 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=9.5
Q ss_pred CCcCEEEEcCCCC
Q 025645 60 HKYDGFVISGSPY 72 (250)
Q Consensus 60 ~~~dglIi~Gg~~ 72 (250)
.++|.||++|=-.
T Consensus 41 ~~vD~VLiaGDLF 53 (405)
T TIGR00583 41 QDVDMILLGGDLF 53 (405)
T ss_pred cCCCEEEECCccC
Confidence 3589999998533
No 480
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=22.36 E-value=77 Score=26.66 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=33.4
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg 70 (250)
...|+++..+...++... ...-+.+.+++.|..+.+.....+...... .-.++||||+.+.
T Consensus 35 ~~~ig~v~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 100 (309)
T PRK11041 35 SRTILVIVPDICDPFFSE----IIRGIEVTAAEHGYLVLIGDCAHQNQQEKTFVNLIITKQIDGMLLLGS 100 (309)
T ss_pred CcEEEEEeCCCcCccHHH----HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 457999886654443322 223356677778887766543221100000 1246899999864
No 481
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=22.32 E-value=3.3e+02 Score=20.08 Aligned_cols=52 Identities=21% Similarity=0.129 Sum_probs=26.0
Q ss_pred CceEEEEeecCCCCCCC-----CCCCcCEEEEcCCC-CCC-CCC-ChhHHHHHHHHHHHH
Q 025645 41 ERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSP-YDA-YGN-DNWILKLCFMLQTLD 92 (250)
Q Consensus 41 ~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~-~~~-~~~-~~~~~~~~~~i~~~~ 92 (250)
..+.++++.-..-.++. -.+++|||++.|-+ ++. |.. ..|...-.+.+++.+
T Consensus 27 ~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L 86 (124)
T PF02662_consen 27 PNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLL 86 (124)
T ss_pred CCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence 34666766543322211 12679999999854 332 222 234444444444443
No 482
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=22.29 E-value=1.3e+02 Score=26.07 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHH
Q 025645 64 GFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLC 109 (250)
Q Consensus 64 glIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla 109 (250)
||+.+||+..-. -.....+++.+...+.-++|+..|++-|.
T Consensus 3 aIltsGG~apG~-----Na~i~~vv~~a~~~g~~v~G~~~G~~GL~ 43 (301)
T TIGR02482 3 GILTSGGDAPGM-----NAAIRAVVRTAIYHGFEVYGIRRGYKGLI 43 (301)
T ss_pred EEEccCCCcHHH-----HHHHHHHHHHHHHCCCEEEEEecCHHHhc
Confidence 567777764322 23455677777777889999999999764
No 483
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=22.22 E-value=3.2e+02 Score=23.20 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcC
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISG 69 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~G 69 (250)
.-+...+++.|..+.+.. ..+ ......++||+|+.+
T Consensus 87 ~~i~~~~~~~g~~~~~~~--~~~--~~~~~~~vDgiI~~~ 122 (327)
T PRK10339 87 HGIETQCEKLGIELTNCY--EHS--GLPDIKNVTGILIVG 122 (327)
T ss_pred HHHHHHHHHCCCEEEEee--ccc--cccccccCCEEEEeC
Confidence 345567778888875442 111 112357899999986
No 484
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=22.18 E-value=1.5e+02 Score=25.56 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=32.2
Q ss_pred ccceEEEEecCCC-ChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCC
Q 025645 5 EEKRYALFLAAKD-SDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPY 72 (250)
Q Consensus 5 ~~~riail~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~ 72 (250)
..+++|||+..-. ... .+....+.+.++++|.+.-++.+..-.......+.++|++|+.+=|-
T Consensus 208 ~a~~~GIiv~tl~~q~~-----~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf~eid~fV~~aCPr 271 (307)
T PF01866_consen 208 DAKTFGIIVGTLGGQGY-----LELIKRLKKLLKKAGKKSYTLSVGEINPAKLANFPEIDAFVQIACPR 271 (307)
T ss_dssp T--EEEEEEE-STTT-------HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTTS---SEEEE-S-TH
T ss_pred cCCEEEEEEecCCCCCC-----HHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhcCcccCEEEEecCCC
Confidence 4568999984322 211 12234577889999998877765543322233445679999998663
No 485
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=22.15 E-value=2e+02 Score=26.12 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=22.3
Q ss_pred cCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEE
Q 025645 62 YDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVL 99 (250)
Q Consensus 62 ~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pil 99 (250)
+|.|||.=|.+|. +| -|.-....+++...+..+||+
T Consensus 193 ~Dviii~RGGGS~-eD-L~~Fn~e~v~~ai~~~~~Pvi 228 (438)
T PRK00286 193 EDVLIVARGGGSL-ED-LWAFNDEAVARAIAASRIPVI 228 (438)
T ss_pred CCEEEEecCCCCH-HH-hhccCcHHHHHHHHcCCCCEE
Confidence 7999999333343 22 122334567777778889976
No 486
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.08 E-value=3.4e+02 Score=22.87 Aligned_cols=79 Identities=20% Similarity=0.142 Sum_probs=40.7
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC------CCCCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN------DLHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~------~l~~~dglIi~Gg~~~~~~~~~ 79 (250)
.+|+++|..+.+... +....+.+.+++.|.++...........+.. .-.++|.|++.+.+.+
T Consensus 137 ~~~vail~~~~~~g~------~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~------ 204 (312)
T cd06346 137 YKSVATTYINNDYGV------GLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPET------ 204 (312)
T ss_pred CCeEEEEEccCchhh------HHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccch------
Confidence 368998875543211 1234567788888987653222211111100 0146889988865332
Q ss_pred hHHHHHHHHHHHHhcC--CcEEE
Q 025645 80 WILKLCFMLQTLDAMQ--KKVLG 100 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~--~PilG 100 (250)
...+++.+.+.+ .|++|
T Consensus 205 ----~~~~~~~~~~~G~~~~~~~ 223 (312)
T cd06346 205 ----GSGILRSAYEQGLFDKFLL 223 (312)
T ss_pred ----HHHHHHHHHHcCCCCceEe
Confidence 233455555544 45665
No 487
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=22.03 E-value=6e+02 Score=24.46 Aligned_cols=22 Identities=18% Similarity=0.012 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCcEEEEehH
Q 025645 83 KLCFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGIC~G 104 (250)
+-++.++.+.+.+.+++|||--
T Consensus 345 DTl~ALr~ak~~G~~tlaItNv 366 (597)
T COG0449 345 DTLAALRLAKEQGAKTLAITNV 366 (597)
T ss_pred HHHHHHHHHHHcCCCEEEEEec
Confidence 3456778888889999999953
No 488
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=21.99 E-value=1.9e+02 Score=20.44 Aligned_cols=61 Identities=10% Similarity=-0.049 Sum_probs=32.2
Q ss_pred HHHHhcCCCceEEEEeecCCCCCCCC---CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEE
Q 025645 33 VAAFGEEGERWDLFRVVEGDFPDFND---LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVL 99 (250)
Q Consensus 33 ~~~l~~~g~~~~~~~~~~~~~~~~~~---l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pil 99 (250)
.++|++.|+.+..+.......+...+ -.++|.||-.-.... .. ..-..+-|.+.+.++|++
T Consensus 36 ~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~~~~-~~-----~~~~~iRR~Av~~~ipl~ 99 (110)
T cd01424 36 AKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKR-AI-----RDGFSIRRAALEYKVPYF 99 (110)
T ss_pred HHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCCCCc-cC-----ccHHHHHHHHHHhCCCEE
Confidence 34566677776665433211111000 136788888633211 11 222345577889999998
No 489
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=21.95 E-value=4.2e+02 Score=21.18 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=32.6
Q ss_pred ceEEEEecCCCChhHHHhhCCHHH---HHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEc
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFN---VFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVIS 68 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~---~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~ 68 (250)
+||+|+.+.--. ..||+|+. .+...+.+.|.++.++-.....-.....-.+.+.+-++
T Consensus 2 kkIaIiGtrGIP----a~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 2 KKIAIIGTRGIP----ARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred ceEEEEeCCCCC----cccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 589999765322 34777764 44455666788887764322221122233455666665
No 490
>PRK14072 6-phosphofructokinase; Provisional
Probab=21.88 E-value=97 Score=28.22 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=0.0
Q ss_pred CcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcC--CcEEEE
Q 025645 61 KYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQ--KKVLGI 101 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~--~PilGI 101 (250)
++|+||+-||.++. .....+-+.+.+.+ +|+.||
T Consensus 103 ~Id~LivIGGdgS~-------~~a~~L~e~~~~~g~~i~vIgI 138 (416)
T PRK14072 103 DIGYFFYNGGNDSM-------DTALKVSQLAKKMGYPIRCIGI 138 (416)
T ss_pred CCCEEEEECChHHH-------HHHHHHHHHHHHhCCCceEEEe
No 491
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=21.78 E-value=1.6e+02 Score=26.06 Aligned_cols=35 Identities=11% Similarity=0.034 Sum_probs=24.3
Q ss_pred CcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 61 KYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 61 ~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
+++||||-| |.++.. ..+.+.++++.+.++||.-+
T Consensus 262 g~~GlVl~g~G~Gn~p------~~~~~al~~a~~~GipVV~~ 297 (349)
T TIGR00520 262 GAKGIVLAGVGNGSLS------AAGLKVNETAAKLGVPIVRS 297 (349)
T ss_pred CCCEEEEEeECCCCCC------HHHHHHHHHHHHCCCEEEEE
Confidence 478999987 544443 24566677777888888765
No 492
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=21.76 E-value=1.2e+02 Score=27.61 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=0.0
Q ss_pred CcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhc--CCcEEEE
Q 025645 61 KYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAM--QKKVLGI 101 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~--~~PilGI 101 (250)
++|+||+-||-++. .....+-+.+.+. ++|+.||
T Consensus 112 ~Id~Li~IGGdgS~-------~~a~~L~~~~~~~g~~i~vvgI 147 (403)
T PRK06555 112 GVDILHTIGGDDTN-------TTAADLAAYLAENGYDLTVVGL 147 (403)
T ss_pred CCCEEEEECChhHH-------HHHHHHHHHHHHhCCCceEEEe
No 493
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=21.69 E-value=2.2e+02 Score=20.26 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=17.5
Q ss_pred ccCCccEEEEEcCCCceEEEEE-CCcEEEEe
Q 025645 164 KVPIGAEVIGFSDKTGVEMFTI-GDHILGIQ 193 (250)
Q Consensus 164 ~lp~~~~~la~s~~~~v~~~~~-~~~~~g~Q 193 (250)
+||++-...+.-++..+..|+. ++.+|+++
T Consensus 10 ~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~ 40 (104)
T PF13806_consen 10 DLPPGEGRAVEVDGRQIALFRVRDGEVYAID 40 (104)
T ss_dssp TSCTTSEEEEEETTEEEEEEEESTTEEEEEE
T ss_pred HCCCCCcEEEEECCeEEEEEEeCCCCEEEEe
Confidence 4555555555555555666666 55666665
No 494
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=21.63 E-value=41 Score=24.98 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=15.8
Q ss_pred cCCcEEEEehHHHHHHHHcCceE
Q 025645 94 MQKKVLGICFGHQVLCRALGGKV 116 (250)
Q Consensus 94 ~~~PilGIC~G~Qlla~a~gg~v 116 (250)
.+..|.|+|.| ||..+|-.+
T Consensus 9 ~~~~i~GVcaG---lA~y~gi~~ 28 (121)
T TIGR02978 9 QNGKIAGVCAG---LADYFGVEV 28 (121)
T ss_pred CCCEehhHHHH---HHHHHCcCH
Confidence 46789999999 788887553
No 495
>PRK13410 molecular chaperone DnaK; Provisional
Probab=21.41 E-value=1.6e+02 Score=28.66 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=33.8
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhc-----CCcEEEEehHHHHHHHHcCce
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAM-----QKKVLGICFGHQVLCRALGGK 115 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~-----~~PilGIC~G~Qlla~a~gg~ 115 (250)
.++|.|++.||... ++.+.++++..... --|--.|+.|+-+.|..+.+.
T Consensus 327 ~dId~VvLVGGssR-------iP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~ 380 (668)
T PRK13410 327 EDIDEVVLVGGSTR-------MPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGE 380 (668)
T ss_pred hhCcEEEEECCccc-------cHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhccc
Confidence 35789999999643 24555566655432 236778999999988877664
No 496
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=21.29 E-value=1.6e+02 Score=27.10 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=31.8
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg 70 (250)
..+|||++-.. .+. ..++ ..|.+.|++.|.++.+..+ .+|+--||.+..||
T Consensus 185 ~P~IAIvDf~~-~~~----~~Ef-~~f~~~f~~~G~~~vI~d~--------~~L~y~~g~L~~~~ 235 (445)
T PF14403_consen 185 KPNIAIVDFLE-YPT----LSEF-EVFQRLFEEHGYDCVICDP--------RDLEYRDGRLYAGG 235 (445)
T ss_pred CCcEEEEeccc-CCc----cchH-HHHHHHHHHcCCceEecCh--------HHceecCCEEEECC
Confidence 45899887332 111 0112 3588999999999988753 34554566666665
No 497
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=21.29 E-value=1.2e+02 Score=26.09 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=32.6
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-CCCCCcCEEEEcC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-NDLHKYDGFVISG 69 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~l~~~dglIi~G 69 (250)
.+|||+|+..+. ....+++.|.+.|.++.++..... .+. +.+++.|.||+.=
T Consensus 3 ~~m~I~iiG~G~-----------~G~~lA~~l~~~G~~V~~~~r~~~--~~~~~~~~~advvi~~v 55 (308)
T PRK14619 3 QPKTIAILGAGA-----------WGSTLAGLASANGHRVRVWSRRSG--LSLAAVLADADVIVSAV 55 (308)
T ss_pred CCCEEEEECccH-----------HHHHHHHHHHHCCCEEEEEeCCCC--CCHHHHHhcCCEEEEEC
Confidence 457899996543 445678888889998865543221 121 2245678777763
No 498
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=21.24 E-value=1.7e+02 Score=22.26 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=50.3
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC--C------CCCCCCC-CCcCEEEEcCCCCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG--D------FPDFNDL-HKYDGFVISGSPYDAY 75 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~------~~~~~~l-~~~dglIi~Gg~~~~~ 75 (250)
+.++|||+..+++.+- ......+.|.+.|.++.++++... + +++..++ ..+|-|-+-=
T Consensus 15 ~~K~IAvVG~S~~P~r-------~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR------ 81 (140)
T COG1832 15 SAKTIAVVGASDKPDR-------PSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFR------ 81 (140)
T ss_pred hCceEEEEecCCCCCc-------cHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEec------
Confidence 4678999997766432 122346889999988888765211 1 2221111 2344443321
Q ss_pred CCChhHHHHHHHHHHHHhcCCcEEEEehHHH
Q 025645 76 GNDNWILKLCFMLQTLDAMQKKVLGICFGHQ 106 (250)
Q Consensus 76 ~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q 106 (250)
. -..+.+.++++++.+.+++-.=+|.+
T Consensus 82 -~---~e~~~~i~~eal~~~~kv~W~QlGi~ 108 (140)
T COG1832 82 -R---SEAAPEVAREALEKGAKVVWLQLGIR 108 (140)
T ss_pred -C---hhhhHHHHHHHHhhCCCeEEEecCcC
Confidence 1 23456778888888888877766654
No 499
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=21.21 E-value=2.6e+02 Score=23.14 Aligned_cols=53 Identities=17% Similarity=0.424 Sum_probs=33.2
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC--------CCCCcCEEEEcC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN--------DLHKYDGFVISG 69 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~--------~l~~~dglIi~G 69 (250)
..+|+++-..... ..+.+.|++.|+++..+.++....+... .-..+|+|+++-
T Consensus 130 ~~~vLi~rg~~~r-----------~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ftS 190 (255)
T PRK05752 130 DPRVLIMRGEGGR-----------ELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSS 190 (255)
T ss_pred CCEEEEEccCccH-----------HHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEECC
Confidence 4567776544333 3467899999999887776654322211 113589999993
No 500
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=21.18 E-value=1.9e+02 Score=24.87 Aligned_cols=83 Identities=6% Similarity=-0.029 Sum_probs=40.8
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCC-CceEEEEeecCCCCC---CCC--CCCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEG-ERWDLFRVVEGDFPD---FND--LHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~---~~~--l~~~dglIi~Gg~~~~~~~~~ 79 (250)
.++|+++..+...+++.. +..-+.+.+++.| ..+.......+.-.. ... -.++||+|+.+.....
T Consensus 24 ~~~Igvv~~~~~~~f~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~----- 94 (330)
T PRK15395 24 DTRIGVTIYKYDDNFMSV----VRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAA----- 94 (330)
T ss_pred CceEEEEEecCcchHHHH----HHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccCHHH-----
Confidence 457898876544444332 2233456677664 444432211110000 000 1479999998643211
Q ss_pred hHHHHHHHHHHHHhcCCcEEEE
Q 025645 80 WILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGI 101 (250)
..+.++.+.+.++|+.-+
T Consensus 95 ----~~~~l~~l~~~giPvV~v 112 (330)
T PRK15395 95 ----APTVIEKARGQDVPVVFF 112 (330)
T ss_pred ----HHHHHHHHHHCCCcEEEE
Confidence 122345556677886544
Done!