Query 025645
Match_columns 250
No_of_seqs 221 out of 1481
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 14:34:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m3p_A Glutamine amido transfe 100.0 6.1E-40 2.1E-44 274.0 21.0 192 4-211 1-192 (250)
2 3l7n_A Putative uncharacterize 100.0 1.2E-39 4E-44 271.1 16.2 190 7-211 1-195 (236)
3 1o1y_A Conserved hypothetical 100.0 1E-36 3.4E-41 253.7 26.2 187 6-210 12-200 (239)
4 1qdl_B Protein (anthranilate s 100.0 8.2E-35 2.8E-39 235.2 17.6 177 9-208 4-193 (195)
5 2a9v_A GMP synthase; structura 100.0 3.8E-34 1.3E-38 234.1 16.8 178 6-210 13-199 (212)
6 3uow_A GMP synthetase; structu 100.0 1.8E-33 6.3E-38 259.1 20.5 211 1-231 2-252 (556)
7 3tqi_A GMP synthase [glutamine 100.0 7.9E-34 2.7E-38 260.4 16.9 202 3-230 7-226 (527)
8 2h2w_A Homoserine O-succinyltr 100.0 2.9E-33 9.8E-38 238.8 18.8 192 3-208 44-259 (312)
9 2vdj_A Homoserine O-succinyltr 100.0 1.8E-33 6.2E-38 239.5 17.4 193 3-208 32-248 (301)
10 1wl8_A GMP synthase [glutamine 100.0 6.9E-33 2.3E-37 222.8 16.3 176 9-210 3-186 (189)
11 1gpm_A GMP synthetase, XMP ami 100.0 3.8E-33 1.3E-37 256.0 16.7 200 4-230 5-223 (525)
12 3fij_A LIN1909 protein; 11172J 100.0 2.2E-32 7.5E-37 229.6 14.3 175 30-211 31-241 (254)
13 2vpi_A GMP synthase; guanine m 100.0 1E-32 3.6E-37 226.3 11.9 175 7-209 25-209 (218)
14 2ywb_A GMP synthase [glutamine 100.0 5.9E-32 2E-36 247.0 14.6 194 9-230 2-205 (503)
15 1i1q_B Anthranilate synthase c 100.0 1.1E-30 3.7E-35 210.5 18.0 178 7-211 1-190 (192)
16 3r75_A Anthranilate/para-amino 100.0 8.4E-31 2.9E-35 244.2 17.9 183 6-211 446-634 (645)
17 2vxo_A GMP synthase [glutamine 100.0 2.3E-30 7.8E-35 243.1 12.7 199 4-230 27-236 (697)
18 2ywj_A Glutamine amidotransfer 100.0 1.4E-30 4.8E-35 208.8 8.5 171 7-210 1-183 (186)
19 1l9x_A Gamma-glutamyl hydrolas 100.0 6.5E-31 2.2E-35 226.8 6.3 236 5-245 29-297 (315)
20 4gud_A Imidazole glycerol phos 100.0 8.7E-31 3E-35 214.0 6.7 176 7-210 3-204 (211)
21 1gpw_B Amidotransferase HISH; 100.0 1.6E-29 5.4E-34 205.0 11.6 169 7-210 1-197 (201)
22 1a9x_B Carbamoyl phosphate syn 100.0 7.9E-29 2.7E-33 217.2 16.8 174 6-210 190-373 (379)
23 2w7t_A CTP synthetase, putativ 100.0 1.8E-29 6.3E-34 213.6 11.8 193 7-211 9-255 (273)
24 3d54_D Phosphoribosylformylgly 100.0 3.2E-28 1.1E-32 198.9 16.4 180 7-209 3-210 (213)
25 1ka9_H Imidazole glycerol phos 100.0 3.8E-29 1.3E-33 202.7 9.1 164 7-201 3-184 (200)
26 2nv0_A Glutamine amidotransfer 100.0 4.7E-29 1.6E-33 201.5 9.5 176 7-210 2-187 (196)
27 1q7r_A Predicted amidotransfer 100.0 3.8E-29 1.3E-33 205.5 7.3 179 4-210 21-209 (219)
28 2ywd_A Glutamine amidotransfer 100.0 5.7E-28 1.9E-32 194.2 11.6 176 6-210 2-189 (191)
29 2v4u_A CTP synthase 2; pyrimid 99.9 2.4E-27 8.3E-32 202.1 12.3 188 6-211 25-275 (289)
30 2iss_D Glutamine amidotransfer 99.9 6.3E-28 2.1E-32 196.7 7.1 177 5-209 19-206 (208)
31 2abw_A PDX2 protein, glutamina 99.9 4.5E-27 1.5E-31 194.1 7.3 184 5-210 2-213 (227)
32 3nva_A CTP synthase; rossman f 99.9 1.3E-25 4.3E-30 201.5 15.9 192 6-210 293-532 (535)
33 1jvn_A Glutamine, bifunctional 99.9 2.4E-26 8.1E-31 212.0 5.6 177 7-209 5-214 (555)
34 1vco_A CTP synthetase; tetrame 99.9 3.1E-25 1.1E-29 202.1 11.0 190 7-210 301-543 (550)
35 1s1m_A CTP synthase; CTP synth 99.9 6.2E-25 2.1E-29 199.9 9.5 190 7-210 290-536 (545)
36 3ugj_A Phosphoribosylformylgly 99.3 7.1E-11 2.4E-15 117.0 17.0 180 6-199 1047-1272(1303)
37 3l4e_A Uncharacterized peptida 98.9 1.7E-10 5.7E-15 93.2 -0.6 103 5-111 26-129 (206)
38 1fy2_A Aspartyl dipeptidase; s 98.8 3.2E-10 1.1E-14 93.1 -1.7 99 6-112 31-130 (229)
39 1oi4_A Hypothetical protein YH 98.8 1.3E-08 4.3E-13 81.2 7.6 97 6-111 23-134 (193)
40 1vhq_A Enhancing lycopene bios 98.6 7E-08 2.4E-12 79.2 6.5 107 1-113 1-151 (232)
41 2rk3_A Protein DJ-1; parkinson 98.6 3.3E-08 1.1E-12 79.0 4.3 99 5-111 2-115 (197)
42 3l18_A Intracellular protease 98.6 7.3E-08 2.5E-12 74.9 5.9 97 6-111 2-111 (168)
43 2vrn_A Protease I, DR1199; cys 98.6 4.5E-08 1.5E-12 77.6 4.8 101 3-111 6-124 (190)
44 4hcj_A THIJ/PFPI domain protei 98.5 1.6E-07 5.5E-12 73.8 6.0 77 33-111 28-117 (177)
45 3ej6_A Catalase-3; heme, hydro 98.5 9.5E-07 3.2E-11 82.0 11.4 102 4-111 535-646 (688)
46 3l3b_A ES1 family protein; ssg 98.5 5.6E-07 1.9E-11 74.2 9.0 102 5-112 22-168 (242)
47 4e08_A DJ-1 beta; flavodoxin-l 98.4 4.9E-07 1.7E-11 71.7 7.1 99 5-111 4-116 (190)
48 3efe_A THIJ/PFPI family protei 98.4 2.1E-06 7.1E-11 69.3 10.4 98 4-111 3-121 (212)
49 2ab0_A YAJL; DJ-1/THIJ superfa 98.4 1.4E-07 4.7E-12 75.9 3.3 97 7-111 3-116 (205)
50 3f5d_A Protein YDEA; unknow pr 98.3 2.8E-06 9.5E-11 68.3 9.1 95 6-111 3-109 (206)
51 3cne_A Putative protease I; st 98.3 1.2E-06 3.9E-11 68.5 6.3 52 60-111 65-120 (175)
52 3er6_A Putative transcriptiona 98.3 1.8E-06 6E-11 69.6 7.3 54 58-111 71-124 (209)
53 3gra_A Transcriptional regulat 98.3 2.5E-06 8.5E-11 68.4 7.9 49 59-111 69-117 (202)
54 1u9c_A APC35852; structural ge 98.3 1.1E-06 3.8E-11 71.4 5.8 79 32-111 34-138 (224)
55 3ot1_A 4-methyl-5(B-hydroxyeth 98.2 5.4E-07 1.9E-11 72.6 3.5 103 1-111 4-121 (208)
56 3kkl_A Probable chaperone prot 98.2 1.3E-06 4.5E-11 72.1 5.8 51 60-111 97-147 (244)
57 2iuf_A Catalase; oxidoreductas 98.2 4.5E-06 1.5E-10 77.7 9.8 103 3-111 526-648 (688)
58 3ttv_A Catalase HPII; heme ori 98.2 2.3E-06 7.8E-11 80.1 6.9 99 3-111 597-708 (753)
59 3n7t_A Macrophage binding prot 98.2 2.4E-06 8.3E-11 70.6 5.8 51 60-111 104-154 (247)
60 1rw7_A YDR533CP; alpha-beta sa 98.1 1.4E-06 5E-11 71.8 4.3 51 60-111 97-147 (243)
61 3noq_A THIJ/PFPI family protei 98.1 5.6E-06 1.9E-10 67.7 7.5 98 5-111 4-113 (231)
62 2fex_A Conserved hypothetical 98.1 3.6E-06 1.2E-10 66.5 5.3 95 7-111 2-110 (188)
63 1sy7_A Catalase 1; heme oxidat 98.0 5.6E-06 1.9E-10 77.8 6.3 102 4-113 532-646 (715)
64 3fse_A Two-domain protein cont 98.0 1.2E-05 4E-10 70.1 7.1 98 5-111 9-121 (365)
65 3mgk_A Intracellular protease/ 98.0 6.6E-06 2.3E-10 66.3 5.2 98 5-111 3-113 (211)
66 3uk7_A Class I glutamine amido 97.9 9.4E-06 3.2E-10 71.6 5.9 97 6-111 12-137 (396)
67 1n57_A Chaperone HSP31, protei 97.9 1.8E-05 6.1E-10 67.0 7.0 79 33-112 82-195 (291)
68 3uk7_A Class I glutamine amido 97.9 1.6E-05 5.5E-10 70.1 6.5 97 6-111 205-330 (396)
69 3ewn_A THIJ/PFPI family protei 97.9 2.7E-05 9.2E-10 64.5 7.4 97 6-111 23-133 (253)
70 4gdh_A DJ-1, uncharacterized p 97.6 2.8E-05 9.7E-10 61.7 2.9 94 7-108 5-120 (194)
71 3en0_A Cyanophycinase; serine 97.2 3.3E-05 1.1E-09 65.2 -1.0 98 7-110 57-160 (291)
72 3bhn_A THIJ/PFPI domain protei 97.1 0.00021 7.1E-09 58.5 2.8 95 5-111 19-128 (236)
73 4e5v_A Putative THUA-like prot 96.1 0.48 1.6E-05 39.4 18.9 172 6-195 4-226 (281)
74 1t0b_A THUA-like protein; treh 96.1 0.48 1.6E-05 38.7 17.0 177 6-195 7-202 (252)
75 3ff4_A Uncharacterized protein 94.5 0.087 3E-06 38.2 6.0 97 4-107 2-117 (122)
76 1u0t_A Inorganic polyphosphate 93.5 0.21 7.1E-06 42.1 7.5 84 7-105 5-109 (307)
77 2r47_A Uncharacterized protein 91.8 0.072 2.5E-06 40.0 2.0 43 60-103 83-125 (157)
78 1eiw_A Hypothetical protein MT 91.0 0.65 2.2E-05 32.9 6.3 56 30-101 18-73 (111)
79 3cs3_A Sugar-binding transcrip 89.9 1.5 5.1E-05 35.4 8.6 80 5-101 7-86 (277)
80 1z0s_A Probable inorganic poly 89.5 0.5 1.7E-05 39.3 5.3 73 6-105 29-101 (278)
81 1y5e_A Molybdenum cofactor bio 88.9 0.2 6.7E-06 38.4 2.3 67 5-74 12-85 (169)
82 2i2c_A Probable inorganic poly 88.9 1.4 4.9E-05 36.2 7.8 69 7-105 1-71 (272)
83 2pjk_A 178AA long hypothetical 88.4 0.28 9.6E-06 37.9 2.9 69 5-73 14-93 (178)
84 3pzy_A MOG; ssgcid, seattle st 88.1 0.11 3.7E-06 39.8 0.3 69 3-73 4-78 (164)
85 2an1_A Putative kinase; struct 87.6 0.24 8.1E-06 41.3 2.2 84 7-105 6-97 (292)
86 3l6u_A ABC-type sugar transpor 87.6 0.74 2.5E-05 37.5 5.2 85 5-102 7-96 (293)
87 1mkz_A Molybdenum cofactor bio 87.3 0.28 9.5E-06 37.7 2.2 68 4-74 8-82 (172)
88 3iwt_A 178AA long hypothetical 86.6 0.56 1.9E-05 36.0 3.7 73 5-77 14-97 (178)
89 2zki_A 199AA long hypothetical 85.9 1.1 3.6E-05 34.6 5.0 38 7-50 5-42 (199)
90 3kbq_A Protein TA0487; structu 85.2 0.23 8E-06 38.2 0.8 68 6-74 3-75 (172)
91 3rht_A (gatase1)-like protein; 84.4 2 6.9E-05 35.1 6.2 80 7-101 5-85 (259)
92 4hs4_A Chromate reductase; tri 84.4 0.98 3.4E-05 35.3 4.2 41 1-48 1-45 (199)
93 3rot_A ABC sugar transporter, 84.3 3.6 0.00012 33.5 7.8 85 4-101 1-92 (297)
94 3rfq_A Pterin-4-alpha-carbinol 84.2 0.33 1.1E-05 37.8 1.3 67 5-73 29-101 (185)
95 3g1w_A Sugar ABC transporter; 84.0 1.1 3.7E-05 36.7 4.5 84 6-102 4-93 (305)
96 3l49_A ABC sugar (ribose) tran 83.6 4.6 0.00016 32.5 8.2 84 5-101 4-92 (291)
97 4gi5_A Quinone reductase; prot 83.4 2.1 7.2E-05 35.5 5.9 47 4-53 20-66 (280)
98 2zuv_A Lacto-N-biose phosphory 83.3 1.4 4.7E-05 41.0 5.1 108 6-118 438-569 (759)
99 3h75_A Periplasmic sugar-bindi 83.0 0.8 2.7E-05 38.6 3.3 85 4-102 1-93 (350)
100 2fn9_A Ribose ABC transporter, 82.7 7.7 0.00026 31.1 9.2 81 7-101 3-89 (290)
101 1di6_A MOGA, molybdenum cofact 82.2 0.66 2.3E-05 36.4 2.3 69 4-73 1-78 (195)
102 2a5l_A Trp repressor binding p 81.6 2.9 0.0001 32.0 5.9 58 7-69 6-79 (200)
103 3m9w_A D-xylose-binding peripl 81.3 6.6 0.00022 32.1 8.4 83 6-101 2-89 (313)
104 3qk7_A Transcriptional regulat 81.0 5.2 0.00018 32.5 7.6 81 4-102 4-95 (294)
105 3gbv_A Putative LACI-family tr 80.5 3 0.0001 33.8 6.0 85 5-102 7-101 (304)
106 3pfn_A NAD kinase; structural 80.5 3.5 0.00012 35.5 6.4 86 5-105 37-142 (365)
107 3jy6_A Transcriptional regulat 80.4 9.9 0.00034 30.3 9.0 82 5-102 6-92 (276)
108 3gv0_A Transcriptional regulat 80.0 3.1 0.0001 33.7 5.8 82 5-101 7-95 (288)
109 1ydg_A Trp repressor binding p 79.5 2.2 7.7E-05 33.1 4.6 45 1-50 1-45 (211)
110 3tb6_A Arabinose metabolism tr 79.4 1.5 5E-05 35.6 3.6 87 6-102 15-106 (298)
111 2x7x_A Sensor protein; transfe 78.5 14 0.00049 30.3 9.6 87 1-101 1-93 (325)
112 3o74_A Fructose transport syst 78.1 13 0.00045 29.3 9.1 82 6-101 2-88 (272)
113 3uug_A Multiple sugar-binding 77.9 6.1 0.00021 32.5 7.1 83 6-101 3-90 (330)
114 2pbq_A Molybdenum cofactor bio 77.2 0.68 2.3E-05 35.7 0.9 67 5-73 4-80 (178)
115 3clk_A Transcription regulator 76.8 4.1 0.00014 32.9 5.6 83 5-102 7-95 (290)
116 2is8_A Molybdopterin biosynthe 76.7 0.67 2.3E-05 35.2 0.7 66 7-73 2-74 (164)
117 2g2c_A Putative molybdenum cof 76.0 0.5 1.7E-05 36.0 -0.2 68 5-73 4-81 (167)
118 2qv7_A Diacylglycerol kinase D 75.8 4 0.00014 34.4 5.4 95 4-113 22-125 (337)
119 3bbl_A Regulatory protein of L 75.6 4.8 0.00017 32.5 5.8 81 6-102 4-94 (287)
120 2q62_A ARSH; alpha/beta, flavo 75.4 3.9 0.00013 33.1 5.0 44 4-50 32-75 (247)
121 3s2y_A Chromate reductase; ura 77.0 0.6 2E-05 36.6 0.0 64 1-68 1-80 (199)
122 3kke_A LACI family transcripti 74.8 4 0.00014 33.3 5.1 82 6-102 15-101 (303)
123 3ksm_A ABC-type sugar transpor 74.0 13 0.00044 29.4 7.9 82 7-101 1-90 (276)
124 3egc_A Putative ribose operon 73.7 2.5 8.5E-05 34.3 3.5 63 5-71 7-74 (291)
125 3o1i_D Periplasmic protein TOR 73.4 12 0.00042 30.0 7.8 83 5-101 4-93 (304)
126 2fep_A Catabolite control prot 73.4 15 0.00052 29.5 8.3 83 5-102 15-102 (289)
127 2rgy_A Transcriptional regulat 73.2 5.6 0.00019 32.2 5.6 83 5-102 7-97 (290)
128 3f6r_A Flavodoxin; FMN binding 73.0 6.5 0.00022 28.5 5.4 55 7-69 2-57 (148)
129 3k9c_A Transcriptional regulat 71.8 4.7 0.00016 32.7 4.8 61 5-71 11-76 (289)
130 2dri_A D-ribose-binding protei 71.3 18 0.00061 28.7 8.2 82 7-101 2-88 (271)
131 2h0a_A TTHA0807, transcription 71.1 8 0.00027 30.8 6.0 80 8-102 1-85 (276)
132 3g85_A Transcriptional regulat 71.1 13 0.00044 29.7 7.3 62 5-70 10-77 (289)
133 3h5o_A Transcriptional regulat 70.0 4.5 0.00015 33.7 4.3 81 6-101 62-147 (339)
134 3k4h_A Putative transcriptiona 69.8 9.5 0.00033 30.6 6.2 82 5-101 7-98 (292)
135 2ioy_A Periplasmic sugar-bindi 69.4 24 0.00081 28.2 8.6 80 7-101 2-88 (283)
136 2vk2_A YTFQ, ABC transporter p 68.9 27 0.00091 28.2 8.9 82 6-101 2-89 (306)
137 2fvy_A D-galactose-binding per 68.6 17 0.00059 29.2 7.6 83 6-102 2-91 (309)
138 1f4p_A Flavodoxin; electron tr 68.2 9.5 0.00032 27.5 5.4 55 7-69 1-56 (147)
139 1ehs_A STB, heat-stable entero 68.2 0.56 1.9E-05 26.3 -1.1 17 97-113 31-47 (48)
140 3hp4_A GDSL-esterase; psychrot 67.9 5 0.00017 29.8 3.9 97 6-102 2-110 (185)
141 1rtt_A Conserved hypothetical 67.7 9.7 0.00033 29.0 5.6 37 6-49 6-45 (193)
142 1jg7_A BGT, DNA beta-glucosylt 67.4 6.1 0.00021 31.6 4.2 69 7-75 1-72 (351)
143 2ark_A Flavodoxin; FMN, struct 67.4 14 0.00047 28.0 6.3 55 7-69 5-60 (188)
144 3kjx_A Transcriptional regulat 66.6 5.7 0.0002 33.1 4.3 81 6-101 68-153 (344)
145 3e61_A Putative transcriptiona 66.3 15 0.00051 29.1 6.7 80 5-101 7-92 (277)
146 2gk3_A Putative cytoplasmic pr 66.1 0.85 2.9E-05 37.2 -1.0 72 31-102 44-125 (256)
147 1uuy_A CNX1, molybdopterin bio 66.0 2.3 7.8E-05 32.2 1.5 68 5-73 4-83 (167)
148 1jlj_A Gephyrin; globular alph 65.8 1.5 5.1E-05 34.1 0.4 68 5-73 13-90 (189)
149 8abp_A L-arabinose-binding pro 65.1 3.1 0.0001 33.9 2.3 82 6-102 2-89 (306)
150 3e3m_A Transcriptional regulat 63.6 5.9 0.0002 33.2 3.9 81 6-101 70-155 (355)
151 1tjy_A Sugar transport protein 63.5 12 0.0004 30.8 5.6 83 6-101 3-91 (316)
152 1wu2_A MOEA protein, molybdopt 63.5 2.6 8.9E-05 36.7 1.6 68 5-72 181-261 (396)
153 3nbm_A PTS system, lactose-spe 63.3 30 0.001 24.0 6.9 80 6-102 6-85 (108)
154 2o20_A Catabolite control prot 62.9 31 0.001 28.3 8.2 61 6-70 63-128 (332)
155 3brs_A Periplasmic binding pro 62.7 3.9 0.00013 32.9 2.4 84 5-101 4-96 (289)
156 3c3k_A Alanine racemase; struc 62.5 6.6 0.00022 31.6 3.8 62 5-70 7-73 (285)
157 3d8u_A PURR transcriptional re 62.3 4.7 0.00016 32.2 2.8 82 6-102 3-89 (275)
158 3b6i_A Flavoprotein WRBA; flav 61.9 19 0.00064 27.2 6.2 57 7-68 2-75 (198)
159 3huu_A Transcription regulator 61.7 14 0.00048 29.9 5.8 82 5-101 21-112 (305)
160 3d02_A Putative LACI-type tran 61.6 7.6 0.00026 31.4 4.1 84 6-102 4-93 (303)
161 3soz_A ORF 245 protein, cytopl 61.5 21 0.00071 28.9 6.5 154 30-193 36-217 (248)
162 1gud_A ALBP, D-allose-binding 61.4 7.3 0.00025 31.4 3.9 82 7-101 2-90 (288)
163 3qq5_A Small GTP-binding prote 61.4 18 0.0006 31.7 6.6 64 34-105 343-407 (423)
164 1iuk_A Hypothetical protein TT 61.1 36 0.0012 24.5 7.3 99 5-110 12-133 (140)
165 3bio_A Oxidoreductase, GFO/IDH 60.4 40 0.0014 27.7 8.4 15 1-15 4-18 (304)
166 3hly_A Flavodoxin-like domain; 60.2 11 0.00038 27.9 4.4 58 7-69 1-59 (161)
167 2iks_A DNA-binding transcripti 60.0 7.4 0.00025 31.4 3.7 61 6-70 20-85 (293)
168 2xed_A Putative maleate isomer 59.2 37 0.0013 27.6 7.8 54 60-113 89-145 (273)
169 3dbi_A Sugar-binding transcrip 58.7 42 0.0014 27.5 8.3 61 6-70 61-128 (338)
170 3hcw_A Maltose operon transcri 57.7 20 0.00069 28.8 6.0 82 5-101 6-97 (295)
171 1uz5_A MOEA protein, 402AA lon 57.7 1.9 6.5E-05 37.7 -0.3 68 5-72 179-257 (402)
172 2rjo_A Twin-arginine transloca 57.4 35 0.0012 27.9 7.6 84 6-102 5-95 (332)
173 2h3h_A Sugar ABC transporter, 56.6 10 0.00035 30.9 4.0 82 7-102 2-89 (313)
174 3hs3_A Ribose operon repressor 55.8 1.7 5.7E-05 35.2 -1.0 61 5-69 9-75 (277)
175 3eag_A UDP-N-acetylmuramate:L- 55.3 86 0.003 25.9 9.7 40 32-71 20-76 (326)
176 3f2v_A General stress protein 54.9 15 0.00051 28.3 4.5 78 7-93 2-86 (192)
177 1g8l_A Molybdopterin biosynthe 54.1 3.5 0.00012 36.1 0.7 68 5-72 176-254 (411)
178 1rli_A Trp repressor binding p 54.0 31 0.001 25.6 6.2 36 7-50 4-39 (184)
179 3brq_A HTH-type transcriptiona 53.6 36 0.0012 27.0 6.9 82 6-102 19-108 (296)
180 2hna_A Protein MIOC, flavodoxi 53.0 59 0.002 23.1 7.9 36 30-70 20-55 (147)
181 2fts_A Gephyrin; gephyrin, neu 52.8 3.4 0.00012 36.2 0.5 67 6-72 181-258 (419)
182 2q9u_A A-type flavoprotein; fl 52.7 44 0.0015 28.5 7.7 87 7-102 257-348 (414)
183 2bon_A Lipid kinase; DAG kinas 51.8 11 0.00036 31.8 3.4 91 7-113 30-129 (332)
184 1dbq_A Purine repressor; trans 51.7 52 0.0018 26.0 7.6 61 5-70 6-72 (289)
185 3gyb_A Transcriptional regulat 51.1 34 0.0012 27.0 6.3 59 5-69 4-67 (280)
186 1t5b_A Acyl carrier protein ph 50.8 54 0.0019 24.5 7.2 41 7-53 2-48 (201)
187 3bil_A Probable LACI-family tr 50.7 9.9 0.00034 31.8 3.1 81 6-101 66-151 (348)
188 3lk7_A UDP-N-acetylmuramoylala 50.5 56 0.0019 28.5 8.0 34 4-48 7-40 (451)
189 1jx6_A LUXP protein; protein-l 49.9 21 0.00071 29.4 4.9 82 6-101 43-134 (342)
190 2fzv_A Putative arsenical resi 49.7 16 0.00054 30.1 4.0 39 5-50 57-99 (279)
191 2xw6_A MGS, methylglyoxal synt 49.4 2.3 8E-05 31.1 -1.0 105 6-113 3-123 (134)
192 3qvl_A Putative hydantoin race 49.1 67 0.0023 25.6 7.7 43 60-114 68-110 (245)
193 1jr2_A Uroporphyrinogen-III sy 48.7 14 0.00047 30.2 3.5 57 3-70 18-85 (286)
194 3re1_A Uroporphyrinogen-III sy 48.0 3.8 0.00013 33.4 -0.0 57 3-70 11-75 (269)
195 2fz5_A Flavodoxin; alpha/beta 48.0 27 0.00093 24.3 4.7 38 30-70 18-55 (137)
196 2hsg_A Glucose-resistance amyl 47.3 14 0.00048 30.4 3.4 61 6-70 60-125 (332)
197 3u7r_A NADPH-dependent FMN red 47.3 55 0.0019 25.0 6.7 83 7-102 3-111 (190)
198 5nul_A Flavodoxin; electron tr 46.6 20 0.00068 25.4 3.8 37 30-69 17-53 (138)
199 3svl_A Protein YIEF; E. coli C 45.7 28 0.00094 26.7 4.7 36 6-48 4-43 (193)
200 2i0f_A 6,7-dimethyl-8-ribityll 45.4 27 0.00091 26.1 4.3 100 7-111 13-130 (157)
201 2c92_A 6,7-dimethyl-8-ribityll 45.1 10 0.00035 28.6 2.0 101 6-111 17-129 (160)
202 1di0_A Lumazine synthase; tran 44.2 59 0.002 24.2 6.1 93 4-101 8-113 (158)
203 2eq5_A 228AA long hypothetical 44.0 1.1E+02 0.0037 23.6 10.1 16 1-16 1-16 (228)
204 4fe7_A Xylose operon regulator 43.6 59 0.002 27.6 7.0 78 6-102 25-104 (412)
205 1sqs_A Conserved hypothetical 43.5 89 0.003 24.4 7.6 41 7-50 2-43 (242)
206 3fni_A Putative diflavin flavo 43.3 31 0.0011 25.4 4.5 59 6-69 4-64 (159)
207 3h5t_A Transcriptional regulat 43.2 56 0.0019 27.1 6.7 83 6-101 68-157 (366)
208 3s40_A Diacylglycerol kinase; 43.2 35 0.0012 28.1 5.3 99 1-113 3-108 (304)
209 1czn_A Flavodoxin; FMN binding 42.3 29 0.00098 25.5 4.2 35 31-69 20-54 (169)
210 2vzf_A NADH-dependent FMN redu 42.3 5.5 0.00019 30.6 0.1 60 7-69 3-77 (197)
211 3edo_A Flavoprotein, putative 42.0 93 0.0032 22.3 7.8 13 57-69 72-84 (151)
212 1qpz_A PURA, protein (purine n 41.9 1.1E+02 0.0038 24.9 8.3 60 6-70 58-123 (340)
213 2b99_A Riboflavin synthase; lu 41.9 25 0.00084 26.3 3.6 87 7-102 3-100 (156)
214 3jvd_A Transcriptional regulat 40.6 4.9 0.00017 33.5 -0.5 58 6-70 64-128 (333)
215 4em8_A Ribose 5-phosphate isom 40.5 37 0.0013 25.1 4.4 36 3-46 4-39 (148)
216 2ohh_A Type A flavoprotein FPR 38.9 46 0.0016 28.1 5.5 59 6-69 256-315 (404)
217 4a3s_A 6-phosphofructokinase; 38.9 33 0.0011 28.8 4.4 42 64-110 5-46 (319)
218 1e2b_A Enzyme IIB-cellobiose; 38.7 48 0.0016 22.7 4.6 54 7-68 4-57 (106)
219 3lcm_A SMU.1420, putative oxid 38.3 1.3E+02 0.0043 22.7 7.5 38 7-52 1-42 (196)
220 4gmf_A Yersiniabactin biosynth 38.0 1.2E+02 0.0043 25.7 8.1 15 1-15 1-16 (372)
221 1zh8_A Oxidoreductase; TM0312, 37.8 42 0.0014 28.0 5.0 15 1-15 13-27 (340)
222 4dik_A Flavoprotein; TM0755, e 36.9 86 0.0029 27.1 6.9 68 30-98 284-355 (410)
223 1t0i_A YLR011WP; FMN binding p 36.5 41 0.0014 25.2 4.3 41 7-50 1-47 (191)
224 3gfs_A FMN-dependent NADPH-azo 36.4 48 0.0016 24.4 4.7 10 59-68 61-70 (174)
225 2hpv_A FMN-dependent NADH-azor 36.1 39 0.0013 25.7 4.2 37 7-49 2-45 (208)
226 1f06_A MESO-diaminopimelate D- 36.0 1.1E+02 0.0037 25.3 7.2 13 60-72 57-69 (320)
227 3fvw_A Putative NAD(P)H-depend 35.9 69 0.0024 24.2 5.6 39 7-49 3-41 (192)
228 1b93_A Protein (methylglyoxal 34.9 25 0.00085 26.2 2.7 103 6-111 11-129 (152)
229 3q2i_A Dehydrogenase; rossmann 34.6 68 0.0023 26.7 5.8 14 3-16 10-23 (354)
230 3d7n_A Flavodoxin, WRBA-like p 34.0 30 0.001 26.2 3.2 16 1-16 1-16 (193)
231 3klb_A Putative flavoprotein; 34.0 74 0.0025 23.3 5.3 42 57-102 74-115 (162)
232 4ici_A Putative flavoprotein; 33.5 1E+02 0.0035 22.8 6.1 42 57-102 83-124 (171)
233 4ew6_A D-galactose-1-dehydroge 33.4 2E+02 0.0069 23.6 9.3 15 2-16 21-35 (330)
234 3tty_A Beta-GAL, beta-galactos 33.3 74 0.0025 29.5 6.2 56 31-100 429-484 (675)
235 2amj_A Modulator of drug activ 32.7 27 0.00092 26.9 2.7 62 7-68 13-77 (204)
236 3r6m_A YEAZ, resuscitation pro 32.1 88 0.003 24.4 5.7 41 59-103 54-95 (213)
237 3rpe_A MDAB, modulator of drug 32.0 33 0.0011 27.0 3.1 80 7-93 26-111 (218)
238 2a3n_A Putative glucosamine-fr 31.9 1E+02 0.0034 25.9 6.4 84 6-104 54-138 (355)
239 1y81_A Conserved hypothetical 31.8 92 0.0032 22.2 5.4 35 5-46 13-47 (138)
240 2obx_A DMRL synthase 1, 6,7-di 31.7 1.1E+02 0.0037 22.7 5.8 93 4-101 9-114 (157)
241 1pfk_A Phosphofructokinase; tr 31.5 73 0.0025 26.7 5.3 41 64-109 6-46 (320)
242 1zxx_A 6-phosphofructokinase; 31.3 81 0.0028 26.4 5.6 42 64-110 5-46 (319)
243 1o7j_A L-asparaginase; atomic 30.9 51 0.0017 27.7 4.3 36 60-101 240-276 (327)
244 3nxk_A Cytoplasmic L-asparagin 30.7 48 0.0017 28.0 4.1 36 60-101 244-280 (334)
245 2wlt_A L-asparaginase; hydrola 30.7 51 0.0018 27.7 4.3 36 60-101 241-277 (332)
246 1ykg_A SIR-FP, sulfite reducta 30.1 46 0.0016 24.5 3.6 37 30-69 28-64 (167)
247 1wsa_A Asparaginase, asparagin 30.0 54 0.0018 27.5 4.3 36 60-101 238-274 (330)
248 1obo_A Flavodoxin; electron tr 29.8 39 0.0013 24.7 3.1 53 7-69 2-54 (169)
249 3tem_A Ribosyldihydronicotinam 29.6 87 0.003 24.5 5.3 43 7-52 2-44 (228)
250 3evn_A Oxidoreductase, GFO/IDH 29.6 1.7E+02 0.0057 23.9 7.4 14 4-17 3-16 (329)
251 1nns_A L-asparaginase II; amid 29.3 56 0.0019 27.4 4.3 36 60-101 234-270 (326)
252 3re1_A Uroporphyrinogen-III sy 29.1 85 0.0029 25.1 5.3 55 5-70 140-202 (269)
253 3p0r_A Azoreductase; structura 29.1 87 0.003 24.0 5.2 45 7-54 5-53 (211)
254 1yt5_A Inorganic polyphosphate 28.9 20 0.00068 28.9 1.4 35 60-105 40-74 (258)
255 3fxa_A SIS domain protein; str 28.6 1.1E+02 0.0038 22.9 5.7 65 32-103 63-127 (201)
256 3lkb_A Probable branched-chain 28.4 1.5E+02 0.0052 24.4 7.1 80 6-101 143-230 (392)
257 4eg0_A D-alanine--D-alanine li 28.4 90 0.0031 25.4 5.5 59 5-68 12-72 (317)
258 1jye_A Lactose operon represso 28.3 42 0.0015 27.7 3.4 60 6-69 61-126 (349)
259 2gel_A Putative GRAM negative 28.1 87 0.003 24.6 5.1 59 30-108 40-99 (231)
260 3kto_A Response regulator rece 27.9 38 0.0013 23.3 2.6 36 1-46 1-36 (136)
261 1byk_A Protein (trehalose oper 27.6 19 0.00064 28.2 1.0 61 6-70 2-67 (255)
262 1wcw_A Uroporphyrinogen III sy 27.6 31 0.0011 27.4 2.4 56 3-70 5-68 (261)
263 3nq4_A 6,7-dimethyl-8-ribityll 27.5 1.9E+02 0.0064 21.4 6.7 102 5-111 11-129 (156)
264 3p9z_A Uroporphyrinogen III co 27.5 90 0.0031 24.2 5.1 53 6-69 110-169 (229)
265 3miz_A Putative transcriptiona 26.8 16 0.00054 29.5 0.4 62 5-70 12-79 (301)
266 2ioj_A Hypothetical protein AF 26.5 71 0.0024 22.7 4.0 40 61-110 74-113 (139)
267 4evq_A Putative ABC transporte 26.1 1.8E+02 0.006 23.7 7.0 81 6-102 151-239 (375)
268 4es6_A Uroporphyrinogen-III sy 26.0 74 0.0025 25.1 4.4 55 5-70 132-194 (254)
269 1hqk_A 6,7-dimethyl-8-ribityll 25.9 48 0.0016 24.6 2.9 102 5-111 11-128 (154)
270 1rvv_A Riboflavin synthase; tr 25.9 1.2E+02 0.0041 22.4 5.1 102 5-111 11-128 (154)
271 3snk_A Response regulator CHEY 25.7 70 0.0024 21.7 3.8 38 30-68 28-66 (135)
272 4hv4_A UDP-N-acetylmuramate--L 25.6 1E+02 0.0036 27.2 5.7 55 7-71 23-91 (494)
273 3e18_A Oxidoreductase; dehydro 25.5 1.2E+02 0.0042 25.3 5.9 12 4-15 3-14 (359)
274 3grc_A Sensor protein, kinase; 25.4 39 0.0013 23.2 2.3 90 1-106 1-91 (140)
275 3bch_A 40S ribosomal protein S 25.2 67 0.0023 26.0 3.8 33 59-102 149-181 (253)
276 1lc0_A Biliverdin reductase A; 25.2 77 0.0026 25.7 4.4 16 1-16 1-17 (294)
277 3u3x_A Oxidoreductase; structu 25.2 1.8E+02 0.0063 24.2 7.0 14 5-18 25-38 (361)
278 3afo_A NADH kinase POS5; alpha 25.1 33 0.0011 29.6 2.2 36 61-106 114-150 (388)
279 3hyn_A Putative signal transdu 25.0 61 0.0021 24.9 3.4 41 59-104 77-118 (189)
280 3lwz_A 3-dehydroquinate dehydr 24.9 2.1E+02 0.0071 21.1 6.1 44 30-73 39-85 (153)
281 3lop_A Substrate binding perip 24.8 1.7E+02 0.0057 23.9 6.6 33 6-44 141-173 (364)
282 2h4a_A YRAM (HI1655); perplasm 24.8 15 0.00052 30.7 -0.1 85 6-105 122-211 (325)
283 1ag9_A Flavodoxin; electron tr 24.7 65 0.0022 23.8 3.6 25 42-69 29-53 (175)
284 1tvm_A PTS system, galactitol- 24.6 1.7E+02 0.0058 20.0 8.3 56 7-69 22-77 (113)
285 1tlt_A Putative oxidoreductase 24.6 1.4E+02 0.0047 24.3 5.9 13 4-16 3-15 (319)
286 4fxs_A Inosine-5'-monophosphat 24.5 1.5E+02 0.0053 26.2 6.5 57 61-117 293-360 (496)
287 3sho_A Transcriptional regulat 24.0 89 0.003 23.1 4.3 81 7-102 40-121 (187)
288 2d59_A Hypothetical protein PH 23.8 2E+02 0.0068 20.4 8.5 77 6-101 22-107 (144)
289 1uf3_A Hypothetical protein TT 23.8 1.2E+02 0.0042 22.6 5.2 39 61-102 32-70 (228)
290 2qu7_A Putative transcriptiona 23.7 1.3E+02 0.0045 23.5 5.5 61 5-71 7-73 (288)
291 1uc8_A LYSX, lysine biosynthes 23.3 2.6E+02 0.0089 21.6 7.4 52 9-69 2-56 (280)
292 3usb_A Inosine-5'-monophosphat 22.9 1.5E+02 0.0052 26.4 6.1 57 61-117 318-385 (511)
293 3eqz_A Response regulator; str 22.9 44 0.0015 22.6 2.1 33 4-46 1-33 (135)
294 3llv_A Exopolyphosphatase-rela 22.8 76 0.0026 22.1 3.5 36 1-47 1-36 (141)
295 2him_A L-asparaginase 1; hydro 22.8 96 0.0033 26.3 4.6 38 60-101 252-290 (358)
296 2xhz_A KDSD, YRBH, arabinose 5 22.6 1.4E+02 0.0048 21.8 5.2 63 32-103 67-131 (183)
297 3cwc_A Putative glycerate kina 22.4 85 0.0029 27.0 4.2 42 59-103 285-327 (383)
298 3ctp_A Periplasmic binding pro 22.3 1.6E+02 0.0055 23.7 5.9 38 6-47 60-97 (330)
299 1e4e_A Vancomycin/teicoplanin 22.1 1.2E+02 0.0042 24.9 5.2 44 4-49 1-44 (343)
300 2i87_A D-alanine-D-alanine lig 22.1 1E+02 0.0034 25.8 4.6 44 4-49 1-44 (364)
301 2rir_A Dipicolinate synthase, 22.0 49 0.0017 27.0 2.6 53 4-67 5-66 (300)
302 3ibs_A Conserved hypothetical 22.0 1.2E+02 0.004 22.9 4.7 36 63-105 114-149 (218)
303 3etn_A Putative phosphosugar i 21.9 1.9E+02 0.0065 22.2 6.0 81 6-103 59-143 (220)
304 3vot_A L-amino acid ligase, BL 21.8 3.6E+02 0.012 22.7 8.3 52 5-69 4-55 (425)
305 4pga_A Glutaminase-asparaginas 21.8 53 0.0018 27.7 2.8 36 60-101 244-280 (337)
306 3lp6_A Phosphoribosylaminoimid 21.8 1.1E+02 0.0039 23.1 4.3 33 5-45 6-39 (174)
307 3ggo_A Prephenate dehydrogenas 21.7 77 0.0026 26.1 3.8 54 5-69 32-102 (314)
308 4fu0_A D-alanine--D-alanine li 21.6 1E+02 0.0035 25.7 4.6 44 4-49 1-44 (357)
309 3dfz_A SIRC, precorrin-2 dehyd 21.6 2.9E+02 0.0099 21.5 7.0 33 4-47 29-61 (223)
310 2raf_A Putative dinucleotide-b 21.3 1.3E+02 0.0046 22.8 4.9 48 5-69 18-65 (209)
311 3mw8_A Uroporphyrinogen-III sy 21.2 77 0.0026 24.7 3.5 55 5-70 119-181 (240)
312 1e5d_A Rubredoxin\:oxygen oxid 21.2 1.5E+02 0.005 24.9 5.6 60 6-70 252-312 (402)
313 3ipc_A ABC transporter, substr 21.1 1.9E+02 0.0065 23.4 6.1 33 6-44 138-170 (356)
314 3lft_A Uncharacterized protein 21.0 78 0.0027 25.2 3.6 60 6-70 2-71 (295)
315 1bvy_F Protein (cytochrome P45 21.0 2.7E+02 0.0092 20.9 8.2 56 6-70 21-76 (191)
316 4b4t_W RPN10, 26S proteasome r 21.0 1.4E+02 0.0048 24.2 5.1 47 63-114 109-163 (268)
317 2duw_A Putative COA-binding pr 21.0 1.7E+02 0.0057 20.9 5.1 56 6-68 13-77 (145)
318 2zkq_b 40S ribosomal protein S 20.9 80 0.0027 26.1 3.5 33 59-102 116-148 (295)
319 3hut_A Putative branched-chain 20.7 2.6E+02 0.0088 22.5 6.9 35 6-46 139-173 (358)
320 1agx_A Glutaminase-asparaginas 20.5 68 0.0023 26.9 3.1 36 60-101 238-275 (331)
321 2a6a_A Hypothetical protein TM 20.4 1.2E+02 0.004 23.7 4.4 47 60-111 65-112 (218)
322 3jtx_A Aminotransferase; NP_28 20.3 3.3E+02 0.011 22.2 7.6 66 33-99 134-205 (396)
323 3i33_A Heat shock-related 70 k 20.3 30 0.001 29.4 1.0 48 60-114 350-403 (404)
324 1j5x_A Glucosamine-6-phosphate 20.2 1.9E+02 0.0064 24.0 5.9 82 6-103 52-135 (342)
325 2e11_A Hydrolase; dimethylarse 20.2 61 0.0021 25.7 2.8 16 4-19 1-16 (266)
326 1c2y_A Protein (lumazine synth 20.2 1.4E+02 0.005 22.0 4.6 103 5-111 12-128 (156)
327 3lte_A Response regulator; str 20.1 53 0.0018 22.1 2.1 36 1-46 1-36 (132)
328 3d4o_A Dipicolinate synthase s 20.1 62 0.0021 26.3 2.8 54 4-68 3-65 (293)
No 1
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=100.00 E-value=6.1e-40 Score=274.03 Aligned_cols=192 Identities=21% Similarity=0.296 Sum_probs=164.6
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
|+.++|+||....... .+++.++|++.|.++.++++..++. .+.++.++|||||+||+.+++++.+|+..
T Consensus 1 m~~~~vliiqh~~~e~---------~~~i~~~l~~~G~~v~v~~~~~~~~-~p~~~~~~d~lIl~GGp~~~~d~~~~~~~ 70 (250)
T 3m3p_A 1 MSLKPVMIIQFSASEG---------PGHFGDFLAGEHIPFQVLRMDRSDP-LPAEIRDCSGLAMMGGPMSANDDLPWMPT 70 (250)
T ss_dssp -CCCCEEEEESSSSCC---------CHHHHHHHHHTTCCEEEEEGGGTCC-CCSCGGGSSEEEECCCSSCTTSCCTTHHH
T ss_pred CCCCeEEEEECCCCCC---------HHHHHHHHHHCCCeEEEEeccCCCc-CcCccccCCEEEECCCCCcccccchHHHH
Confidence 4467899998654322 2557889999999999998876552 22357889999999999998888899999
Q ss_pred HHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc
Q 025645 84 LCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW 163 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~ 163 (250)
+.++++.+.+.++|+||||+|||+|+.++||+|.+.+. ++.||.+|++++.+..+++| + +++.+.++++|++.|
T Consensus 71 ~~~~i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~~~-~e~G~~~v~~~~~~~~~~l~-g---~~~~~~v~~~H~~~v- 144 (250)
T 3m3p_A 71 LLALIRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDSPH-AEIGWVRAWPQHVPQALEWL-G---TWDELELFEWHYQTF- 144 (250)
T ss_dssp HHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEE-EEEEEEEEEECSSHHHHHHH-S---CSSCEEEEEEEEEEE-
T ss_pred HHHHHHHHHHcCCCEEEECHHHHHHHHHhCCEEEeCCC-CceeeEEEEEecCCCCcccc-c---CCCccEEEEEcccee-
Confidence 99999999999999999999999999999999999865 78999999987532235788 6 788999999999998
Q ss_pred ccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCHHHHHHHHHHHh
Q 025645 164 KVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTKDILYNLIDRLL 211 (250)
Q Consensus 164 ~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~~~~~~~~~~~~ 211 (250)
.+|++++++|++++|.+++++++++++|+|||||++.+++..|++...
T Consensus 145 ~lp~~~~vlA~s~~~~~~a~~~~~~~~GvQfHPE~~~~~~~~~l~~~~ 192 (250)
T 3m3p_A 145 SIPPGAVHILRSEHCANQAYVLDDLHIGFQCHIEMQAHMVREWCSISP 192 (250)
T ss_dssp CCCTTEEEEEEETTEEEEEEEETTTEEEESSCTTCCHHHHHHHHHHCG
T ss_pred ecCCCCEEEEEeCCCCEEEEEECCeeEEEEeCCcCCHHHHHHHHHhhH
Confidence 799999999999999999999988999999999999999999998653
No 2
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=100.00 E-value=1.2e-39 Score=271.12 Aligned_cols=190 Identities=19% Similarity=0.246 Sum_probs=162.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCC---CCCChhHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDA---YGNDNWILK 83 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~---~~~~~~~~~ 83 (250)
|||++|....... .+.+.+++++.|.++.++++..++.. ++++.++|+|||+|||.++ .++.+|+..
T Consensus 1 m~i~vi~h~~~e~---------~g~~~~~l~~~g~~~~~~~~~~~~~~-p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~ 70 (236)
T 3l7n_A 1 MRIHFILHETFEA---------PGAYLAWAALRGHDVSMTKVYRYEKL-PKDIDDFDMLILMGGPQSPSSTKKEFPYYDA 70 (236)
T ss_dssp CEEEEEECCTTSC---------CHHHHHHHHHTTCEEEEEEGGGTCCC-CSCGGGCSEEEECCCSSCTTCCTTTCTTCCH
T ss_pred CeEEEEeCCCCCC---------chHHHHHHHHCCCeEEEEeeeCCCCC-CCCccccCEEEECCCCCCcccccccCcccch
Confidence 5899998654432 24577899999999999998776532 2357889999999999985 345689854
Q ss_pred --HHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccc
Q 025645 84 --LCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDE 161 (250)
Q Consensus 84 --~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~ 161 (250)
+.++|+++.+.++||||||+|||+|+.++||+|.+.+. ++.|+.+++++..+..+++|++ +++.+.++++|++.
T Consensus 71 ~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~-~~~G~~~v~~~~~~~~~~l~~~---~~~~~~v~~~H~~~ 146 (236)
T 3l7n_A 71 QAEVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSPK-KEIGNYLISLTEAGKMDSYLSD---FSDDLLVGHWHGDM 146 (236)
T ss_dssp HHHHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEEEE-EEEEEEEEEECTTGGGCGGGTT---SCSEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecCCC-ceeeeEEEEEccCcccChHHhc---CCCCcEEEEecCCc
Confidence 88999999999999999999999999999999998765 6899999999865445789988 88899999999987
Q ss_pred ccccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCHHHHHHHHHHHh
Q 025645 162 VWKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTKDILYNLIDRLL 211 (250)
Q Consensus 162 v~~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~~~~~~~~~~~~ 211 (250)
..+|++++++|++++|.+++++.+++++|+|||||++.+++++|++...
T Consensus 147 -~~lp~~~~vla~s~~~~~~a~~~~~~v~gvQfHPE~~~~~~~~~~~~~~ 195 (236)
T 3l7n_A 147 -PGLPDKAQVLAISQGCPRQIIKFGPKQYAFQCHLEFTPELVAALIAQED 195 (236)
T ss_dssp -CCCCTTCEEEEECSSCSCSEEEEETTEEEESSBSSCCHHHHHHHHHHCS
T ss_pred -ccCCChheEEEECCCCCEEEEEECCCEEEEEeCCCCCHHHHHHHHHhhh
Confidence 6799999999999999999999988999999999999999999998753
No 3
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=100.00 E-value=1e-36 Score=253.75 Aligned_cols=187 Identities=23% Similarity=0.339 Sum_probs=157.7
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCC--ChhHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGN--DNWILK 83 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~--~~~~~~ 83 (250)
-.||.||....... ...+.+++++.|.++.++.+...+ +.+.++.++||||||||+.+++++ .+|...
T Consensus 12 ~~~~~~i~~~~~~~---------~~~i~~~l~~~G~~v~v~~~~~~~-~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~ 81 (239)
T 1o1y_A 12 HVRVLAIRHVEIED---------LGMMEDIFREKNWSFDYLDTPKGE-KLERPLEEYSLVVLLGGYMGAYEEEKYPFLKY 81 (239)
T ss_dssp CCEEEEECSSTTSS---------CTHHHHHHHHTTCEEEEECGGGTC-CCSSCGGGCSEEEECCCSCCTTCTTTCTHHHH
T ss_pred eeEEEEEECCCCCC---------chHHHHHHHhCCCcEEEeCCcCcc-ccccchhcCCEEEECCCCccccCCccChhHHH
Confidence 35788887554432 234778999999998877665432 123457789999999999888875 688888
Q ss_pred HHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc
Q 025645 84 LCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW 163 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~ 163 (250)
+.++++++.+.++|+||||+|||+|+.++||++.+.+.+++.|+.+++.. ..+++|++ +++.+.++++|++.+
T Consensus 82 ~~~~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~G~~~v~~~---~~~~l~~~---~~~~~~~~~~H~~~v- 154 (239)
T 1o1y_A 82 EFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFVEKV---SDNKFFRE---FPDRLRVFQWHGDTF- 154 (239)
T ss_dssp HHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEEEEEEC---CCCGGGTT---SCSEEEEEEEESEEE-
T ss_pred HHHHHHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCCCCccccEEEEEC---CCCchHHh---CCCCceeEeecCCcc-
Confidence 99999999999999999999999999999999999877689999999865 35788887 788899999999997
Q ss_pred ccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCHHHHHHHHHHH
Q 025645 164 KVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTKDILYNLIDRL 210 (250)
Q Consensus 164 ~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~~~~~~~~~~~ 210 (250)
.+|++++++|+++++.++++++++ ++|+|||||.+.+++++|++..
T Consensus 155 ~lp~~~~vlA~s~~~~iea~~~~~-i~gvQfHPE~~~~~~~~~~~~~ 200 (239)
T 1o1y_A 155 DLPRRATRVFTSEKYENQGFVYGK-AVGLQFHIEVGARTMKRWIEAY 200 (239)
T ss_dssp CCCTTCEEEEECSSCSCSEEEETT-EEEESSBSSCCHHHHHHHHHHT
T ss_pred ccCCCCEEEEEcCCCCEEEEEECC-EEEEEeCccCCHHHHHHHHHHh
Confidence 799999999999999999999987 9999999999999999998753
No 4
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=100.00 E-value=8.2e-35 Score=235.20 Aligned_cols=177 Identities=22% Similarity=0.282 Sum_probs=140.9
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCC--CcCEEEEcCCCCCCCCCC--hhHHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLH--KYDGFVISGSPYDAYGND--NWILKL 84 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~--~~dglIi~Gg~~~~~~~~--~~~~~~ 84 (250)
|+||+.. ++|...+.++|++.|.++.+++..... .+++. ++|||||+||++++++.. +| .
T Consensus 4 i~iid~~----------~s~~~~~~~~l~~~G~~~~v~~~~~~~---~~~~~~~~~dglil~gG~~~~~~~~~~~~---~ 67 (195)
T 1qdl_B 4 TLIIDNY----------DSFVYNIAQIVGELGSYPIVIRNDEIS---IKGIERIDPDRLIISPGPGTPEKREDIGV---S 67 (195)
T ss_dssp EEEEECS----------CSSHHHHHHHHHHTTCEEEEEETTTSC---HHHHHHHCCSEEEECCCSSCTTSHHHHTT---H
T ss_pred EEEEECC----------CchHHHHHHHHHhCCCEEEEEeCCCCC---HHHHhhCCCCEEEECCCCCChhhhhhhhH---H
Confidence 8888732 234566789999999998887743211 11233 599999999998876531 22 3
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCC--CcccccCCCCCceEEEeeecccc
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPC--SFLEDLGEIPGSLSIMECHRDEV 162 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~--~l~~~~~~l~~~~~~~~~H~~~v 162 (250)
.++++++ +.++|+||||+|||+|+.++||++.+.+...+.++.++.+++ .+ ++|++ +++.+.++++|++.|
T Consensus 68 ~~~i~~~-~~~~PvLGIC~G~QlL~~~~gg~v~~~~~~~~g~~~~v~~~~---~~~~~l~~~---~~~~~~v~~~H~~~v 140 (195)
T 1qdl_B 68 LDVIKYL-GKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVN---NSPLSLYYG---IAKEFKATRYHSLVV 140 (195)
T ss_dssp HHHHHHH-TTTSCEEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEEECC---SSCCSTTTT---CCSEEEEEEEEEEEE
T ss_pred HHHHHHh-cCCCcEEEEehHHHHHHHHhCCEEeccCCCcCCCceEEEECC---CCHhHHHhc---CCCceEEeccccchh
Confidence 4677775 779999999999999999999999987655566788888763 34 78888 788899999999999
Q ss_pred cccCCccEEEEEc-CCCceEEEEECC-cEEEEecCCCCC-----HHHHHHHHH
Q 025645 163 WKVPIGAEVIGFS-DKTGVEMFTIGD-HILGIQGHPEYT-----KDILYNLID 208 (250)
Q Consensus 163 ~~lp~~~~~la~s-~~~~v~~~~~~~-~~~g~QfHPE~~-----~~~~~~~~~ 208 (250)
..+|++++++|++ +++.++++++++ +++|+|||||.+ ..++++|++
T Consensus 141 ~~l~~~~~vla~s~~~g~i~a~~~~~~~~~gvQfHPE~~~~~~g~~l~~~f~~ 193 (195)
T 1qdl_B 141 DEVHRPLIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLN 193 (195)
T ss_dssp ECCCTTEEEEEEESSSCCEEEEEESSSSEEEESSBTTSTTCTTHHHHHHHHHH
T ss_pred hhCCCCcEEEEEECCCCcEEEEEeCCCCEEEEecCCCCCCCccHHHHHHHHHh
Confidence 8899999999999 889999999986 899999999964 478888875
No 5
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=100.00 E-value=3.8e-34 Score=234.13 Aligned_cols=178 Identities=23% Similarity=0.288 Sum_probs=145.3
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCC-CCCCCCC--ChhHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGS-PYDAYGN--DNWIL 82 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg-~~~~~~~--~~~~~ 82 (250)
.+||.+++... +|..++.++|++.|.++.+++... +.+++.++|||||||| +.++++. .+|+
T Consensus 13 ~~~i~~id~~~----------~~~~~~~~~l~~~G~~~~vv~~~~----~~~~l~~~DglIl~GG~p~~~~~~~~~~~l- 77 (212)
T 2a9v_A 13 MLKIYVVDNGG----------QWTHREWRVLRELGVDTKIVPNDI----DSSELDGLDGLVLSGGAPNIDEELDKLGSV- 77 (212)
T ss_dssp CCBEEEEEESC----------CTTCHHHHHHHHTTCBCCEEETTS----CGGGGTTCSEEEEEEECSCGGGTGGGHHHH-
T ss_pred cceEEEEeCCC----------ccHHHHHHHHHHCCCEEEEEeCCC----CHHHHhCCCEEEECCCCCCCCcccccchhH-
Confidence 35888887543 345678899999999988876432 2345677999999999 8888765 2332
Q ss_pred HHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccc
Q 025645 83 KLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEV 162 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v 162 (250)
.+.+.+.++|+||||+|||+|+.++||++.+.+. ++.|++++.+++ .+++|++ +++.+.++++|++.|
T Consensus 78 -----~~~~~~~~~PiLGIC~G~Qll~~~lGg~v~~~~~-~~~G~~~v~~~~---~~~l~~~---~~~~~~v~~~H~~~v 145 (212)
T 2a9v_A 78 -----GKYIDDHNYPILGICVGAQFIALHFGASVVKAKH-PEFGKTKVSVMH---SENIFGG---LPSEITVWENHNDEI 145 (212)
T ss_dssp -----HHHHHHCCSCEEEETHHHHHHHHHTTCEEEEEEE-EEEEEEEEEESC---CCGGGTT---CCSEEEEEEEEEEEE
T ss_pred -----HHHHHhCCCCEEEEChHHHHHHHHhCCEEEcCCC-cccCceeeEECC---CChhHhc---CCCceEEEeEhhhhH
Confidence 3344578999999999999999999999998754 689999998873 5678887 788899999999999
Q ss_pred cccCCccEEEEEcCCCceEEEEEC-CcEEEEecCCCCC-----HHHHHHHHHHH
Q 025645 163 WKVPIGAEVIGFSDKTGVEMFTIG-DHILGIQGHPEYT-----KDILYNLIDRL 210 (250)
Q Consensus 163 ~~lp~~~~~la~s~~~~v~~~~~~-~~~~g~QfHPE~~-----~~~~~~~~~~~ 210 (250)
..+|++++++|+++++.+++++.+ ++++|+|||||.+ ..++++|++..
T Consensus 146 ~~l~~~~~vlA~s~d~~i~ai~~~~~~i~gvQfHPE~~~~~~g~~l~~~F~~~~ 199 (212)
T 2a9v_A 146 INLPDDFTLAASSATCQVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIGIC 199 (212)
T ss_dssp ESCCTTEEEEEECSSCSCSEEEESSSSEEEESSCTTSTTSTTHHHHHHHHHHHH
T ss_pred hhCCCCcEEEEEeCCCCEEEEEECCCCEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 889999999999999999999986 5799999999965 47899998754
No 6
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=100.00 E-value=1.8e-33 Score=259.07 Aligned_cols=211 Identities=21% Similarity=0.304 Sum_probs=165.1
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCC--CCcCEEEEcCCCCCCCCCC
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDL--HKYDGFVISGSPYDAYGND 78 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l--~~~dglIi~Gg~~~~~~~~ 78 (250)
|..+...+|+||+.+. +|+.++++.+++.|..+++++... +.+++ .++|||||||||.++++..
T Consensus 2 ~~~~~~~~IlilD~Gs----------~~~~~I~r~lre~Gv~~eiv~~~~----~~~~i~~~~~dgIIlsGGp~s~~~~~ 67 (556)
T 3uow_A 2 MEGEEYDKILVLNFGS----------QYFHLIVKRLNNIKIFSETKDYGV----ELKDIKDMNIKGVILSGGPYSVTEAG 67 (556)
T ss_dssp -----CCEEEEEESSC----------TTHHHHHHHHHHTTCCEEEEETTC----CGGGTTTSCEEEEEECCCSCCTTSTT
T ss_pred CCCCCCCEEEEEECCC----------ccHHHHHHHHHHCCCeEEEEECCC----CHHHHhhcCCCEEEECCCCCcccccC
Confidence 4444557899998764 356788999999999998886421 12223 3789999999999988654
Q ss_pred -hhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCC---------------------
Q 025645 79 -NWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDL--------------------- 136 (250)
Q Consensus 79 -~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~--------------------- 136 (250)
+|... .+++.+.+.++|+||||+|||+|+.++||+|.+... .+.|...+.+.+..
T Consensus 68 ~~~~~~--~l~~~a~~~g~PvLGIC~G~QlLa~~lGG~V~~~~~-~E~G~~~l~~~~~~~~~~~p~v~~~~~~~~~mg~~ 144 (556)
T 3uow_A 68 SPHLKK--EVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKT-SEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLY 144 (556)
T ss_dssp CCCCCH--HHHHHHHHTTCCEEEETHHHHHHHHHTTCEEEEEEE-EEEEEEEEEECCTTGGGGCSGGGGC---CCHHHHH
T ss_pred CcchhH--HHHHHhhhcCCCEEEECHHHHHHHHHhCCcEecCCC-cccCCcceeeccCcccccccceecccccccccccc
Confidence 44332 456667778999999999999999999999998754 68899888887542
Q ss_pred -------CCCCcccccCCC-CCceEEEeeecccccccCCccEEEEEcCCCceEEEEE-CCcEEEEecCCCCC-----HHH
Q 025645 137 -------APCSFLEDLGEI-PGSLSIMECHRDEVWKVPIGAEVIGFSDKTGVEMFTI-GDHILGIQGHPEYT-----KDI 202 (250)
Q Consensus 137 -------~~~~l~~~~~~l-~~~~~~~~~H~~~v~~lp~~~~~la~s~~~~v~~~~~-~~~~~g~QfHPE~~-----~~~ 202 (250)
..+++|++ + ++.+.++++|++.|..+|++++++|+++++.++++++ ++++||+|||||.+ ..+
T Consensus 145 ~n~~~~~~~~~Lf~g---l~~~~~~v~~~H~d~V~~lp~g~~vlA~s~~~~i~ai~~~~~~i~GvQFHPE~~~~~~G~~l 221 (556)
T 3uow_A 145 SNYKLMNETCCLFEN---IKSDITTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELM 221 (556)
T ss_dssp TTSCCCC--CGGGTT---CCSSEEEEEEEEEEEEEECCTTCEEEEEETTEEEEEEEETTTTEEEESSCTTSTTSTTHHHH
T ss_pred cccccccccchhhcc---cccCceEEEEEccceeeccCCCcEEEEEeCCCCEEEEEECCCCEEEEEcCCCCCccccchHH
Confidence 12378888 7 8889999999999999999999999999999999999 45899999999964 569
Q ss_pred HHHHHHHHh--cCCCccHHHHHHHHhhcccc
Q 025645 203 LYNLIDRLL--NNNSIEREFAENAKFGLEIA 231 (250)
Q Consensus 203 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 231 (250)
+++|+..++ ...|.++.++++..+.+++.
T Consensus 222 l~nFl~~i~g~~~~~~~~~~~~~~i~~ir~~ 252 (556)
T 3uow_A 222 FYNFAYNICKCKKQFDPIRYHELELKNIEKY 252 (556)
T ss_dssp HHHHHTTTTCCCC-CCHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhhccccccccccccccceeeeeec
Confidence 999997664 36788888888887777664
No 7
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=100.00 E-value=7.9e-34 Score=260.43 Aligned_cols=202 Identities=22% Similarity=0.332 Sum_probs=152.2
Q ss_pred ccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCC--CcCEEEEcCCCCCCCCCChh
Q 025645 3 LMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLH--KYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 3 ~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~--~~dglIi~Gg~~~~~~~~~~ 80 (250)
.|+..||+||+.+. +|+.++++.+++.|..++++.... +.+++. ++|||||||||.++++...
T Consensus 7 ~~~~~~I~IlD~g~----------~~~~~i~r~lr~~Gv~~~i~p~~~----~~~~i~~~~~dgIILsGGp~sv~~~~~- 71 (527)
T 3tqi_A 7 DIHQHRILILDFGS----------QYAQLIARRVREIGVYCELMPCDI----DEETIRDFNPHGIILSGGPETVTLSHT- 71 (527)
T ss_dssp -CCCSEEEEEECSC----------TTHHHHHHHHHHHTCEEEEEETTC----CSSSSTTTCCSEEEECCCCC--------
T ss_pred cccCCeEEEEECCC----------ccHHHHHHHHHHCCCeEEEEECCC----CHHHHHhcCCCEEEECCcCcccccCCC-
Confidence 45567899998754 356778999999999988875422 122333 4699999999999876431
Q ss_pred HHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCC--------ce
Q 025645 81 ILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPG--------SL 152 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~--------~~ 152 (250)
..+.+.+.+.++||||||+|||+|+.++||+|.+.+. .+.|++.+.+.+ .+++|++ +++ .+
T Consensus 72 ----~~~~~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~~~~-~e~G~~~v~~~~---~~~l~~~---l~~~~~~~~~~~~ 140 (527)
T 3tqi_A 72 ----LRAPAFIFEIGCPVLGICYGMQTMAYQLGGKVNRTAK-AEFGHAQLRVLN---PAFLFDG---IEDQVSPQGEPLL 140 (527)
T ss_dssp ------CCCSTTTSSSCEEEETHHHHHHHHHSSSCBC------CEEEEEEEESS---CTTTTSS---CCSBCCTTSCCEE
T ss_pred ----hhhHHHHHhcCCCEEEEChHHHHHHHHcCCeEEeCCC-ccccceEEEEcC---CChhhcC---Cccccccccccce
Confidence 1223445677999999999999999999999998765 689999999874 4678988 676 68
Q ss_pred EEEeeecccccccCCccEEEEEcCCCceEEEEEC-CcEEEEecCCCCC-----HHHHHHHHHHHh--cCCCccHHHHHHH
Q 025645 153 SIMECHRDEVWKVPIGAEVIGFSDKTGVEMFTIG-DHILGIQGHPEYT-----KDILYNLIDRLL--NNNSIEREFAENA 224 (250)
Q Consensus 153 ~~~~~H~~~v~~lp~~~~~la~s~~~~v~~~~~~-~~~~g~QfHPE~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~ 224 (250)
.++++|+|.|..+|++++++|+++++.+++++++ +++||+|||||.+ .+++++|+..++ ...|.++.++++.
T Consensus 141 ~v~~~H~d~v~~lp~g~~v~A~s~~~~i~ai~~~~~~~~GvQFHPE~~~t~~G~~ll~nF~~~i~~~~~~w~~~~~~~~~ 220 (527)
T 3tqi_A 141 DVWMSHGDIVSELPPGFEATACTDNSPLAAMADFKRRFFGLQFHPEVTHTPQGHRILAHFVIHICQCIPNWTTKHIIEDS 220 (527)
T ss_dssp EEEEESSSCBCSCCTTCEEEEEETTEEEEEEECSSSCEEEESBCSSSTTSTTHHHHHHHHHHTTSCCCCCCCSHHHHHHH
T ss_pred EEEEEcccchhccCCCCEEEEEeCCCcEEEEEcCCCCEEEEEeccccccccccchhhhhhhhhcccccchhhHHHHHHHH
Confidence 9999999999999999999999999999999984 5899999999964 579999997664 4677777777777
Q ss_pred Hhhccc
Q 025645 225 KFGLEI 230 (250)
Q Consensus 225 ~~~~~~ 230 (250)
.+.+.+
T Consensus 221 i~~i~~ 226 (527)
T 3tqi_A 221 IRDIQE 226 (527)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 8
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-33 Score=238.76 Aligned_cols=192 Identities=16% Similarity=0.182 Sum_probs=151.7
Q ss_pred ccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC--CCCC------------CC--CCCCcCEEE
Q 025645 3 LMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG--DFPD------------FN--DLHKYDGFV 66 (250)
Q Consensus 3 ~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~~~------------~~--~l~~~dglI 66 (250)
+++++||+||++.+... ++..+|.++|...+.++++..+... +.+. .+ ..+++||+|
T Consensus 44 dirplkI~ILnlmp~k~-------~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglI 116 (312)
T 2h2w_A 44 DIRPLEILILNLMPDKI-------KTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFI 116 (312)
T ss_dssp -CCCEEEEEECCCSSHH-------HHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEE
T ss_pred CCCCceEEEEeCCCCcC-------chHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEE
Confidence 46789999999977764 4678899999998877776544332 3221 11 246799999
Q ss_pred EcCCCCC--CCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccc
Q 025645 67 ISGSPYD--AYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLED 144 (250)
Q Consensus 67 i~Gg~~~--~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~ 144 (250)
|+|||.+ .+++.+|+..+.++++++.+.++|+||||||+|+++.++||..+....+++.|+.++++++ .++++++
T Consensus 117 ITGsP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~~~~~---~~pL~~g 193 (312)
T 2h2w_A 117 ITGAPVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKLSGVYKHRVAK---DSVLFRG 193 (312)
T ss_dssp ECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEESS---CCGGGTT
T ss_pred ECCCCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCEEEEEEEEEcC---CCccccC
Confidence 9999975 4567799999999999999999999999999999888777744444445789999998884 6789988
Q ss_pred cCCCCCceEEEeeeccc-----ccccCCccEEEEEcCCCceEEEEE-CCcEEEEecCCCCCHHHHHHHHH
Q 025645 145 LGEIPGSLSIMECHRDE-----VWKVPIGAEVIGFSDKTGVEMFTI-GDHILGIQGHPEYTKDILYNLID 208 (250)
Q Consensus 145 ~~~l~~~~~~~~~H~~~-----v~~lp~~~~~la~s~~~~v~~~~~-~~~~~g~QfHPE~~~~~~~~~~~ 208 (250)
+++.+.+.++|... |..+ +++++||+|+.|++++++. +++++++|||||++...++++..
T Consensus 194 ---~~~~f~vphsr~~e~~~~~v~~~-pga~vLA~S~~~~~q~~~~~~~~~~~vQgHPEyd~~~l~~ey~ 259 (312)
T 2h2w_A 194 ---HDDFFWAPHSRYTEVKKEDIDKV-PELEILAESDEAGVYVVANKSERQIFVTGHPEYDRYTLRDEYY 259 (312)
T ss_dssp ---CCSEEEEEEEEEEECCHHHHTTC-C-CEEEEEETTTEEEEEECSSSSEEEECSCTTCCTTHHHHHHH
T ss_pred ---CCCceEeeEEeccccCHHHccCC-CCCEEEEcCCCCcceEEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 78899999885533 3333 5999999999999999998 45899999999999998886654
No 9
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=100.00 E-value=1.8e-33 Score=239.49 Aligned_cols=193 Identities=15% Similarity=0.211 Sum_probs=152.2
Q ss_pred ccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC--CCCC------------CC--CCCCcCEEE
Q 025645 3 LMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG--DFPD------------FN--DLHKYDGFV 66 (250)
Q Consensus 3 ~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~~~------------~~--~l~~~dglI 66 (250)
+++++||+||++.+... ++..+|.++|...+.++++..+... +.+. .+ ..+++||+|
T Consensus 32 ~irplkI~ILnlmp~k~-------~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglI 104 (301)
T 2vdj_A 32 DIRALKIAILNLMPTKQ-------ETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLI 104 (301)
T ss_dssp TSCCEEEEEECCCSSHH-------HHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEE
T ss_pred CCCCceEEEEeCCCCcC-------chHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEE
Confidence 46789999999977764 4678899999998877776544332 2111 00 236799999
Q ss_pred EcCCCCCC--CCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccc
Q 025645 67 ISGSPYDA--YGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLED 144 (250)
Q Consensus 67 i~Gg~~~~--~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~ 144 (250)
|+|||.+. +++.+|+..+.++++++.++++|+||||||||+++.++||..+.....++.|+.+++++. ..++++++
T Consensus 105 ITGap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~~~~~--~~~pL~~g 182 (301)
T 2vdj_A 105 ITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVFEHEVRE--QHVKLLQG 182 (301)
T ss_dssp ECCCTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECC--SSCGGGTT
T ss_pred ECCCCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCCCCEEEEEEEEecC--CCCccccC
Confidence 99999754 567799999999999999999999999999999777776643333344689999998874 46889988
Q ss_pred cCCCCCceEEEeee-----cccccccCCccEEEEEcCCCceEEEEE-CCcEEEEecCCCCCHHHHHHHHH
Q 025645 145 LGEIPGSLSIMECH-----RDEVWKVPIGAEVIGFSDKTGVEMFTI-GDHILGIQGHPEYTKDILYNLID 208 (250)
Q Consensus 145 ~~~l~~~~~~~~~H-----~~~v~~lp~~~~~la~s~~~~v~~~~~-~~~~~g~QfHPE~~~~~~~~~~~ 208 (250)
+++.+.+.++| .+.|..+| ++++||+|+.|++++++. +++++++|||||++...++++..
T Consensus 183 ---~~~~f~~phsr~~~~~~~~v~~~p-ga~vLA~S~~~~~~~~~~~~~~~~~vQgHpEyd~~~l~~ey~ 248 (301)
T 2vdj_A 183 ---FDELFFAVHSRHTEVRESDIREVK-ELTLLANSEEAGVHLVIGQEGRQVFALGHSEYSCDTLKQEYE 248 (301)
T ss_dssp ---CCSEEEEEEEEEEECCHHHHHTCT-TEEEEEEETTTEEEEEEEGGGTEEEECSCTTCCTTHHHHHHH
T ss_pred ---CCCceEeeeEeccCcCHHHccCCC-CCEEEEeCCCCcceEEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 78899999874 45566665 999999999999999999 45899999999999998886554
No 10
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=100.00 E-value=6.9e-33 Score=222.82 Aligned_cols=176 Identities=23% Similarity=0.420 Sum_probs=139.0
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCC--CCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDL--HKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l--~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
|+|++.... +..++.++|++.|.++.+++... +.+++ .++||||||||+ ++.+ . ..+.+
T Consensus 3 i~iid~~~~----------~~~~~~~~l~~~G~~~~~~~~~~----~~~~~~~~~~dglil~Gg~-~~~~-~---~~~~~ 63 (189)
T 1wl8_A 3 IVIMDNGGQ----------YVHRIWRTLRYLGVETKIIPNTT----PLEEIKAMNPKGIIFSGGP-SLEN-T---GNCEK 63 (189)
T ss_dssp EEEEECSCT----------THHHHHHHHHHTTCEEEEEETTC----CHHHHHHTCCSEEEECCCS-CTTC-C---TTHHH
T ss_pred EEEEECCCc----------hHHHHHHHHHHCCCeEEEEECCC----ChHHhcccCCCEEEECCCC-Chhh-h---hhHHH
Confidence 888875543 34567899999999988876432 11123 359999999998 5533 2 12466
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccccC
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKVP 166 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~lp 166 (250)
+++.+.+.++|+||||+|||+|+.++||++.+.+. .+.|+..+.++. .+++|++ +++.+.++++|++.+.++|
T Consensus 64 ~i~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~-~~~G~~~~~~~~---~~~l~~~---~~~~~~~~~~h~~~v~~l~ 136 (189)
T 1wl8_A 64 VLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGEK-AEYSLVEIEIID---EXEIFKG---LPKRLKVWESHMDEVKELP 136 (189)
T ss_dssp HHHTGGGTCSCEEEETHHHHHHHHHHTCEEEECSC-CSCEEEEEEESC---C--CCTT---SCSEEEEEECCSEEEEECC
T ss_pred HHHHHhhCCCeEEEEcHHHHHHHHHhCCceecCCC-cccCceeEEEec---CchHHhC---CCCceEEEEEeeeehhhCC
Confidence 77777678999999999999999999999998754 478998888763 5678887 7888999999999988899
Q ss_pred CccEEEEEcCCCceEEEEECCc-EEEEecCCCCC-----HHHHHHHHHHH
Q 025645 167 IGAEVIGFSDKTGVEMFTIGDH-ILGIQGHPEYT-----KDILYNLIDRL 210 (250)
Q Consensus 167 ~~~~~la~s~~~~v~~~~~~~~-~~g~QfHPE~~-----~~~~~~~~~~~ 210 (250)
++++++|+++++.+++++++++ ++|+|||||.. ..++++|++..
T Consensus 137 ~~~~vla~s~~g~i~a~~~~~~~~~gvQfHPE~~~~~~g~~l~~~f~~~~ 186 (189)
T 1wl8_A 137 PKFKILARSETCPIEAMKHEELPIYGVQFHPEVAHTEKGEEILRNFAKLC 186 (189)
T ss_dssp TTEEEEEEESSCSCSEEEESSSCEEEESSCTTSTTSTTHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEecCCCcCCCcchHHHHHHHHHHH
Confidence 9999999999999999998764 99999999964 47899988754
No 11
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=100.00 E-value=3.8e-33 Score=255.95 Aligned_cols=200 Identities=19% Similarity=0.301 Sum_probs=160.3
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCC--CcCEEEEcCCCCCCCCCC-hh
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLH--KYDGFVISGSPYDAYGND-NW 80 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~--~~dglIi~Gg~~~~~~~~-~~ 80 (250)
|+.++|+||+.+. +|..++++++++.|..+++++... +.+++. ++|||||||||.++++.. ++
T Consensus 5 ~~~~~IlIlD~g~----------~~~~~i~r~lr~~G~~~~i~p~~~----~~~~i~~~~~dgiILsGGp~s~~~~~~~~ 70 (525)
T 1gpm_A 5 IHKHRILILDFGS----------QYTQLVARRVRELGVYCELWAWDV----TEAQIRDFNPSGIILSGGPESTTEENSPR 70 (525)
T ss_dssp TTSSEEEEEECSC----------TTHHHHHHHHHHTTCEEEEEESCC----CHHHHHHHCCSEEEECCCSSCTTSTTCCC
T ss_pred CCCCEEEEEECCC----------ccHHHHHHHHHHCCCEEEEEECCC----CHHHHhccCCCEEEECCcCccccccCCcc
Confidence 4557899997654 355678899999999988876422 112233 459999999999988754 44
Q ss_pred HHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCC--------ce
Q 025645 81 ILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPG--------SL 152 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~--------~~ 152 (250)
.. +.+.+.++||||||+|||+|+.++||+|.+.+. ++.|++.+++.+ .+++|++ +++ .+
T Consensus 71 ~~------~~~~~~g~PvLGIC~G~Qlla~~~GG~V~~~~~-~e~G~~~v~~~~---~~~L~~~---l~~~~~~~~~~~~ 137 (525)
T 1gpm_A 71 AP------QYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNE-REFGYAQVEVVN---DSALVRG---IEDALTADGKPLL 137 (525)
T ss_dssp CC------GGGGTSSSCEEEETHHHHHHHHHHTCEEECCSS-CEEEEEEEEECS---CCTTTTT---CCSEECTTSCEEE
T ss_pred hH------HHHHHCCCCEEEEChHHHHHHHHcCCEEEeCCC-cccceEEEEeCC---CCHhhcc---Cccccccccccce
Confidence 32 344567999999999999999999999998764 689999998863 4678988 777 78
Q ss_pred EEEeeecccccccCCccEEEEEcCCCceEEEEEC-CcEEEEecCCCCC-----HHHHHHHHHHHh--cCCCccHHHHHHH
Q 025645 153 SIMECHRDEVWKVPIGAEVIGFSDKTGVEMFTIG-DHILGIQGHPEYT-----KDILYNLIDRLL--NNNSIEREFAENA 224 (250)
Q Consensus 153 ~~~~~H~~~v~~lp~~~~~la~s~~~~v~~~~~~-~~~~g~QfHPE~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~ 224 (250)
.++++|++.|..+|++++++|+++++.++|++++ +++||+|||||.+ ..++++|+..+. ...|.+++++++.
T Consensus 138 ~v~~~H~~~V~~lp~g~~v~A~s~~~~i~ai~~~~~~i~gvQFHPE~~~~~~g~~ll~nF~~~i~~~~~~~~~~~~~~~~ 217 (525)
T 1gpm_A 138 DVWMSHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDA 217 (525)
T ss_dssp EEEEEECSEEEECCTTCEEEEECSSCSCSEEEETTTTEEEESBCTTSTTSTTHHHHHHHHHHTTSCCCCCCCHHHHHHHH
T ss_pred EEEEEccceeeeCCCCCEEEEECCCCCEEEEEECCCCEEEEecCCCCCcchhHHHHHHHHHHhhhhccccchHHHHHHhh
Confidence 9999999999999999999999999999999984 5899999999954 579999997654 4678888887777
Q ss_pred Hhhccc
Q 025645 225 KFGLEI 230 (250)
Q Consensus 225 ~~~~~~ 230 (250)
.+.+++
T Consensus 218 ~~~ir~ 223 (525)
T 1gpm_A 218 VARIRE 223 (525)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 666554
No 12
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.98 E-value=2.2e-32 Score=229.56 Aligned_cols=175 Identities=18% Similarity=0.216 Sum_probs=137.2
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCC---CCCCCC--hh--------HHHHHHHHHHHHhcCC
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPY---DAYGND--NW--------ILKLCFMLQTLDAMQK 96 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~---~~~~~~--~~--------~~~~~~~i~~~~~~~~ 96 (250)
..+.++++++|..+.++....+.. .++.++++||||||||++ +.|++. +| ...+.++++++.+.++
T Consensus 31 ~~~~~~l~~aG~~pv~lp~~~~~~-~~~~l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~ 109 (254)
T 3fij_A 31 QRYVDAIQKVGGFPIALPIDDPST-AVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGK 109 (254)
T ss_dssp HHHHHHHHHHTCEEEEECCCCGGG-HHHHHHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCEEEEEeCCCchH-HHHHHhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCC
Confidence 456788888998887775432111 111256899999999986 334332 22 1337889999999999
Q ss_pred cEEEEehHHHHHHHHcCceEEecC-------------CCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc
Q 025645 97 KVLGICFGHQVLCRALGGKVGKAY-------------TGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW 163 (250)
Q Consensus 97 PilGIC~G~Qlla~a~gg~v~~~~-------------~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~ 163 (250)
||||||+|||+|+.++||++.+.. ..++.|++++++++ .+.+++. +++.+.+.++|++.|.
T Consensus 110 PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~~v~~~~---~s~l~~~---~~~~~~v~~~H~~~v~ 183 (254)
T 3fij_A 110 PIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEP---TSELAKH---HPNKKLVNSLHHQFIK 183 (254)
T ss_dssp CEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCEEEEECT---TSSGGGT---CCTTEEECCBCSCEES
T ss_pred CEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceEEEEeCC---CChHHHh---cCCcEEEEEeccchhh
Confidence 999999999999999999987641 23568999999984 4678887 7778899999999999
Q ss_pred ccCCccEEEEEcCCCceEEEEEC-C--cEEEEecCCCCC-------HHHHHHHHHHHh
Q 025645 164 KVPIGAEVIGFSDKTGVEMFTIG-D--HILGIQGHPEYT-------KDILYNLIDRLL 211 (250)
Q Consensus 164 ~lp~~~~~la~s~~~~v~~~~~~-~--~~~g~QfHPE~~-------~~~~~~~~~~~~ 211 (250)
++|++++++|.++++.+++++++ + +++|+|||||+. ..++++|++..+
T Consensus 184 ~l~~g~~v~a~s~dg~ieai~~~~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~ 241 (254)
T 3fij_A 184 KLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESK 241 (254)
T ss_dssp SCCSSEEEEEEETTCCEEEEEESSCSSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEeCCCcEEEEEecCCCCeEEEEEcCCccCCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999998 6 499999999965 457888887654
No 13
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.98 E-value=1e-32 Score=226.33 Aligned_cols=175 Identities=26% Similarity=0.391 Sum_probs=132.9
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCC--CCcCEEEEcCCCCCCCCC-ChhHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDL--HKYDGFVISGSPYDAYGN-DNWILK 83 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l--~~~dglIi~Gg~~~~~~~-~~~~~~ 83 (250)
+||+||+.+.. |..++.+.|++.|.++.++++... .+++ .++||||||||+.++++. .+|.
T Consensus 25 ~~I~iiD~g~~----------~~~~i~~~l~~~G~~~~vv~~~~~----~~~l~~~~~dglil~Gg~~~~~~~~~~~~-- 88 (218)
T 2vpi_A 25 GAVVILDAGAQ----------YGKVIDRRVRELFVQSEIFPLETP----AFAIKEQGFRAIIISGGPNSVYAEDAPWF-- 88 (218)
T ss_dssp TCEEEEECSTT----------TTHHHHHHHHHTTCCEEEECTTCC----HHHHHHHTCSEEEEEC---------CCCC--
T ss_pred CeEEEEECCCc----------hHHHHHHHHHHCCCEEEEEECCCC----hHHHhhcCCCEEEECCCCcccccccchhH--
Confidence 68999987643 234577899999999887764321 1122 459999999999877643 2332
Q ss_pred HHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccc
Q 025645 84 LCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW 163 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~ 163 (250)
.+.+.+.++|+||||+|||+|+.++||++.+.+. .+.|++++++++ .+++|++ +++.+.++++|++.|.
T Consensus 89 ----~~~~~~~~~PilGIC~G~Qll~~~~GG~v~~~~~-~~~G~~~v~~~~---~~~l~~~---l~~~~~v~~~H~~~v~ 157 (218)
T 2vpi_A 89 ----DPAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSV-REDGVFNISVDN---TCSLFRG---LQKEEVVLLTHGDSVD 157 (218)
T ss_dssp ----CGGGGTSSCCEEEETHHHHHHHHHTTCCEEEEEE-CSCEEEEEEECT---TSGGGTT---CCSEEEEEECSEEEES
T ss_pred ----HHHHHHcCCCEEEEcHHHHHHHHHhCCceEeCCC-CcccEEEEEEcc---CChhHhc---CCCCcEEeehhhhHhh
Confidence 2334567999999999999999999999998765 578999998873 5789988 7888999999999998
Q ss_pred ccCCccEEEEEcCCCceEEEEEC-CcEEEEecCCCCC-----HHHHHHHH-HH
Q 025645 164 KVPIGAEVIGFSDKTGVEMFTIG-DHILGIQGHPEYT-----KDILYNLI-DR 209 (250)
Q Consensus 164 ~lp~~~~~la~s~~~~v~~~~~~-~~~~g~QfHPE~~-----~~~~~~~~-~~ 209 (250)
.+|++++++|++ ++.+++++++ ++++|+|||||.+ ..++++|+ +.
T Consensus 158 ~l~~~~~vlA~s-~~~i~ai~~~~~~i~gvQfHPE~~~~~~g~~l~~~F~~~~ 209 (218)
T 2vpi_A 158 KVADGFKVVARS-GNIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDI 209 (218)
T ss_dssp SCCTTCEEEEEE-TTEEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHHTTT
T ss_pred hcCCCCEEEEEc-CCeEEEEEECCCCEEEEEcCCCCCCChhHHHHHHHHHHHH
Confidence 899999999999 4579999974 4799999999965 46888888 44
No 14
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.97 E-value=5.9e-32 Score=246.97 Aligned_cols=194 Identities=19% Similarity=0.265 Sum_probs=153.2
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCC--CcCEEEEcCCCCCCCCCC-hhHHHHH
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLH--KYDGFVISGSPYDAYGND-NWILKLC 85 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~--~~dglIi~Gg~~~~~~~~-~~~~~~~ 85 (250)
|+||+.+. +|..++++.+++.|..++++.... +.+++. ++|||||||||.++++.. +|..
T Consensus 2 i~ilD~g~----------~~~~~i~r~l~~~G~~~~i~p~~~----~~~~i~~~~~dgiIlsGGp~s~~~~~~~~~~--- 64 (503)
T 2ywb_A 2 VLVLDFGS----------QYTRLIARRLRELRAFSLILPGDA----PLEEVLKHRPQALILSGGPRSVFDPDAPRPD--- 64 (503)
T ss_dssp EEEEESSC----------TTHHHHHHHHHTTTCCEEEEETTC----CHHHHHTTCCSEEEECCCSSCSSCTTCCCCC---
T ss_pred EEEEECCC----------cHHHHHHHHHHHCCCEEEEEECCC----CHHHHHhcCCCEEEECCCCchhccCCCcchH---
Confidence 77887653 356788999999999988876421 112232 459999999999988754 4432
Q ss_pred HHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeeccccccc
Q 025645 86 FMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWKV 165 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~l 165 (250)
+.+.+.++||||||+|||+|+.++||+|.+.+. ++.|++.+.+.+ +++|++ +++.+.++++|++.|..+
T Consensus 65 ---~~~~~~~~PvLGIC~G~Qlla~~~GG~v~~~~~-~e~G~~~v~~~~----~~l~~~---~~~~~~v~~~H~~~v~~l 133 (503)
T 2ywb_A 65 ---PRLFSSGLPLLGICYGMQLLAQELGGRVERAGR-AEYGKALLTRHE----GPLFRG---LEGEVQVWMSHQDAVTAP 133 (503)
T ss_dssp ---GGGGCSSCCEEEETHHHHHHHHTTTCEEECC----CEEEEECSEEC----SGGGTT---CCSCCEEEEECSCEEEEC
T ss_pred ---HHHHhCCCCEEEECHHHHHHHHHhCCeEeeCCC-CccceEEEEecC----cHHhhc---CCCccEEEEECCCccccC
Confidence 344567999999999999999999999998764 689999988862 688988 788899999999999999
Q ss_pred CCccEEEEEcCCCceEEEEEC-CcEEEEecCCCCC-----HHHHHHHHHHHh-cCCCccHHHHHHHHhhccc
Q 025645 166 PIGAEVIGFSDKTGVEMFTIG-DHILGIQGHPEYT-----KDILYNLIDRLL-NNNSIEREFAENAKFGLEI 230 (250)
Q Consensus 166 p~~~~~la~s~~~~v~~~~~~-~~~~g~QfHPE~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 230 (250)
|++++++|+++++.+++++++ +++||+|||||.. ..++++|++... ...|.++.++++..+.+++
T Consensus 134 p~g~~v~A~s~~~~i~ai~~~~~~~~gvQFHPE~~~~~~g~~ll~~F~~~~~~~~~~~~~~~~~~~i~~ir~ 205 (503)
T 2ywb_A 134 PPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELAGVKRDWTPEHVLEELLREVRE 205 (503)
T ss_dssp CTTCEEEEECSSCSCSEEECTTSSEEEESBCTTSTTSTTHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCEEEEEeCCCCEEEEecCCCcccccccHHHHHHHHHHhhhhccccchhhhHHHHHhhhh
Confidence 999999999999999999984 5899999999954 579999995443 3577888787777665544
No 15
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.97 E-value=1.1e-30 Score=210.52 Aligned_cols=178 Identities=19% Similarity=0.194 Sum_probs=128.5
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCC------CCcCEEEEcCCCCCCCCCChh
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDL------HKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l------~~~dglIi~Gg~~~~~~~~~~ 80 (250)
+||+||+ ++++|+..+.++|++.|+++.+++... +.+++ .+.+++||+||++++.+. .+
T Consensus 1 ~~i~iiD----------n~~s~~~~i~~~l~~~G~~~~v~~~~~----~~~~i~~~l~~~~~~~iil~gGpg~~~~~-~~ 65 (192)
T 1i1q_B 1 ADILLLD----------NIDSFTWNLADQLRTNGHNVVIYRNHI----PAQTLIDRLATMKNPVLMLSPGPGVPSEA-GC 65 (192)
T ss_dssp CEEEEEE----------CSCSSHHHHHHHHHHTTCEEEEEETTS----CSHHHHHHHTTCSSEEEEECCCSSCGGGS-TT
T ss_pred CcEEEEE----------CCccHHHHHHHHHHHCCCeEEEEECCC----CHHHHHHHhhhccCCeEEECCCCcCchhC-ch
Confidence 3788887 234567788999999999988876431 11112 134579999999987543 22
Q ss_pred HHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecc
Q 025645 81 ILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRD 160 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~ 160 (250)
. .++++. .+.++|+||||+|||+|+.++||++.+.+. ...|....... ..+++|++ +++.+.++++|++
T Consensus 66 ~---~~l~~~-~~~~~PilGIC~G~Qll~~~~Gg~v~~~~~-~~~g~~~~~~~---~~~~l~~~---~~~~~~v~~~H~~ 134 (192)
T 1i1q_B 66 M---PELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQAGE-ILHGKATSIEH---DGQAMFAG---LANPLPVARYHSL 134 (192)
T ss_dssp H---HHHHHH-HBTTBCEEEETHHHHHHHHHTSCCCCC----CCSSEEEEEEE---CCCGGGTT---SCSSEEEEECCC-
T ss_pred H---HHHHHH-HhcCCCEEEECcChHHHHHHhCCEEEeCCC-cEecceeEEec---CCChHHhc---CCCCcEEEechhh
Confidence 2 334444 467899999999999999999999876643 34555443332 24688888 7889999999999
Q ss_pred cccccCCccEEEEEcCCCceEEEEEC-CcEEEEecCCCCC-----HHHHHHHHHHHh
Q 025645 161 EVWKVPIGAEVIGFSDKTGVEMFTIG-DHILGIQGHPEYT-----KDILYNLIDRLL 211 (250)
Q Consensus 161 ~v~~lp~~~~~la~s~~~~v~~~~~~-~~~~g~QfHPE~~-----~~~~~~~~~~~~ 211 (250)
.|..+|++++++|.++ ..++++++. ++++|+|||||.. .+++++|++.+.
T Consensus 135 ~v~~lp~~~~v~a~~~-~~~~ai~~~~~~~~gvQfHPE~~~~~~g~~il~nf~~~~~ 190 (192)
T 1i1q_B 135 VGSNVPAGLTINAHFN-GMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQ 190 (192)
T ss_dssp --CCCCTTCEEEEEET-TEEEEEEETTTTEEEESSBTTSTTCTTHHHHHHHHHHHHT
T ss_pred HhhhCCCccEEEECCC-CcEEEEEECCCCEEEEEccCcccCCcccHHHHHHHHHHHh
Confidence 9989999999999664 457888874 5899999999954 678999987653
No 16
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.97 E-value=8.4e-31 Score=244.17 Aligned_cols=183 Identities=16% Similarity=0.094 Sum_probs=150.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCC-hhHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGND-NWILKL 84 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~-~~~~~~ 84 (250)
.++|+|++.. ++|+.++.+++++.|.++++++.... .++.++|||||+|||+++++.. +|+..+
T Consensus 446 Gk~IlviD~g----------dsf~~~l~~~l~~~G~~v~Vv~~d~~-----~~~~~~DgIIlsGGPg~p~d~~~p~i~~~ 510 (645)
T 3r75_A 446 GCRALIVDAE----------DHFTAMIAQQLSSLGLATEVCGVHDA-----VDLARYDVVVMGPGPGDPSDAGDPRIARL 510 (645)
T ss_dssp TCEEEEEESS----------CTHHHHHHHHHHHTTCEEEEEETTCC-----CCGGGCSEEEECCCSSCTTCTTSHHHHHH
T ss_pred CCEEEEEECC----------ccHHHHHHHHHHHCCCEEEEEECCCc-----ccccCCCEEEECCCCCChhhhhhhhHHHH
Confidence 4688888643 35788899999999999988874321 2356899999999999998775 899889
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccc
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWK 164 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~ 164 (250)
.++|+.+.+.++||||||+|||+|+.++||+|.+.+.+.+.+...+.+. .++++.+ ++..+.++.+|.+.+..
T Consensus 511 ~~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~~~~~~G~~~~i~~~----~~~l~~~---~~~~~~v~~~h~~~~~~ 583 (645)
T 3r75_A 511 YAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRREVPNQGIQVEIDLF----GQRERVG---FYNTYVAQTVRDEMDVD 583 (645)
T ss_dssp HHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEET----TEEEEEE---EEEEEEEBCSCSEEEET
T ss_pred HHHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcCCCcccccceEEeee----cCcceec---CCCcEEEEEehhhcccc
Confidence 9999999999999999999999999999999998876544444566554 3566766 56777777778776667
Q ss_pred cCCccEEEEEcCCCceEEEEECCcEEEEecCCCC-----CHHHHHHHHHHHh
Q 025645 165 VPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEY-----TKDILYNLIDRLL 211 (250)
Q Consensus 165 lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~-----~~~~~~~~~~~~~ 211 (250)
+|++++++|.++++.++++++++ ++|+|||||. +..++++|+..+.
T Consensus 584 lp~g~~v~A~s~dg~i~Ai~~~~-~~GVQFHPE~~~t~~G~~Ll~nFl~~~~ 634 (645)
T 3r75_A 584 GVGTVAISRDPRTGEVHALRGPT-FSSMQFHAESVLTVDGPRILGEAITHAI 634 (645)
T ss_dssp TTEEEEEEECTTTCBEEEEEETT-EEEESSBTTSTTCTTHHHHHHHHHHHHT
T ss_pred CCCCeEEEEEcCCCcEEEEEcCC-EEEEEeCCeecCCcchHHHHHHHHHHHH
Confidence 99999999999999999999875 7999999994 4679999998774
No 17
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=243.12 Aligned_cols=199 Identities=23% Similarity=0.324 Sum_probs=144.5
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCC--CCcCEEEEcCCCCCCCCC-Chh
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDL--HKYDGFVISGSPYDAYGN-DNW 80 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l--~~~dglIi~Gg~~~~~~~-~~~ 80 (250)
+...+|+||+.+.. |...+.+.+++.|+.+++++... +.+++ .++|||||||||+++++. .+|
T Consensus 27 ~~~~~I~VLDfg~q----------~~~liar~lre~Gv~~~ivp~~~----~~e~i~~~~~dGIILsGGp~s~~~~~~~~ 92 (697)
T 2vxo_A 27 HYEGAVVILDAGAQ----------YGKVIDRRVRELFVQSEIFPLET----PAFAIKEQGFRAIIISGGPNSVYAEDAPW 92 (697)
T ss_dssp --CCCEEEEEEC------------CHHHHHHHHHHTTCCEEEEETTC----CHHHHHHHTCSEEEEEECC-------CCC
T ss_pred CCCCEEEEEECCCc----------hHHHHHHHHHHCCCEEEEEECCC----CHHHHhhcCCCEEEECCCCCcccCccchh
Confidence 34568999987653 45567889999999988886432 11122 478999999999998754 344
Q ss_pred HHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecc
Q 025645 81 ILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRD 160 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~ 160 (250)
.. +.+.+.++||||||+|||+|+.++||++.+.+. .+.|++++.+.+ .+++|++ +++.+.++++|++
T Consensus 93 ~~------~~i~~~g~PvLGIC~G~QlLa~~lGG~v~~~~~-~e~G~~~v~~~~---~~~Lf~~---l~~~~~v~~~H~~ 159 (697)
T 2vxo_A 93 FD------PAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSV-REDGVFNISVDN---TCSLFRG---LQKEEVVLLTHGD 159 (697)
T ss_dssp CC------GGGTTSSCCEEEEEHHHHHHHHHTTCCBCC--------CEEEEECT---TSGGGTT---CCSEEEECCCSSC
T ss_pred HH------HHHHhCCCCEEEECHHHHHHHHHhCCeEeecCC-CccceEEEEecC---CChhhhc---CCccCcceeeccc
Confidence 32 233467899999999999999999999988764 588999999863 4789998 7888999999999
Q ss_pred cccccCCccEEEEEcCCCceEEEEECC-cEEEEecCCCCC-----HHHHHHHHHHHh--cCCCccHHHHHHHHhhccc
Q 025645 161 EVWKVPIGAEVIGFSDKTGVEMFTIGD-HILGIQGHPEYT-----KDILYNLIDRLL--NNNSIEREFAENAKFGLEI 230 (250)
Q Consensus 161 ~v~~lp~~~~~la~s~~~~v~~~~~~~-~~~g~QfHPE~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 230 (250)
.|..+|++++++|++++ .++++++.+ ++||+|||||.. ..++++|+..+. ...|.++.++++..+.+++
T Consensus 160 ~V~~lp~g~~vlA~s~~-~i~ai~~~~~~i~GvQFHPE~~~t~~g~~ll~nFl~~i~~~~~~~~~~~~~~~~i~~Ir~ 236 (697)
T 2vxo_A 160 SVDKVADGFKVVARSGN-IVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFTVQNRELECIREIKE 236 (697)
T ss_dssp CBSSCCTTCEEEEEETT-EEEEEEETTTTEEEESSCTTSSSSTTHHHHHHHHHTTTTCCCSCCCHHHHHHHHHHHHHH
T ss_pred ceecCCCCeEEEEEeCC-ceEEEEeCCCCEEEEEecccCCCCccchhhhhhhhhccccccccchhhHHHHHHHHHHHH
Confidence 99999999999999965 899999854 799999999964 579999984332 4567777777766665544
No 18
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.4e-30 Score=208.78 Aligned_cols=171 Identities=16% Similarity=0.172 Sum_probs=121.0
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
|||+||+... +|.. +.++|++.|.++.+++ .+++++++||||+|||+.+++++..+...+.+
T Consensus 1 m~i~vl~~~g----------~~~~-~~~~l~~~G~~~~~~~-------~~~~~~~~dglil~GG~~~~~~~~~~~~~~~~ 62 (186)
T 2ywj_A 1 MIIGVLAIQG----------DVEE-HEEAIKKAGYEAKKVK-------RVEDLEGIDALIIPGGESTAIGKLMKKYGLLE 62 (186)
T ss_dssp CEEEEECSSS----------CCHH-HHHHHHHTTSEEEEEC-------SGGGGTTCSEEEECCSCHHHHHHHHHHTTHHH
T ss_pred CEEEEEecCc----------chHH-HHHHHHHCCCEEEEEC-------ChHHhccCCEEEECCCCchhhhhhhhccCHHH
Confidence 4799996421 2333 4588889998877664 12357789999999998766543222222334
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCC--C------CCCcccccCCCCCceEEEeee
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDL--A------PCSFLEDLGEIPGSLSIMECH 158 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~--~------~~~l~~~~~~l~~~~~~~~~H 158 (250)
.++ +.++|+||||+|||+|+.++||++.. .|+.+....... . .+.+|.+ + ..+.++++|
T Consensus 63 ~i~---~~~~PilGIC~G~Qll~~~~gg~~~~------lg~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~H 129 (186)
T 2ywj_A 63 KIK---NSNLPILGTCAGMVLLSKGTGINQIL------LELMDITVKRNAYGRQVDSFEKEIEFKD---L-GKVYGVFIR 129 (186)
T ss_dssp HHH---TCCCCEEEETHHHHHHSSCCSSCCCC------CCCSSEEEETTTTCSSSCCEEEEEEETT---T-EEEEEEESS
T ss_pred HHH---hcCCcEEEECHHHHHHHHHhCCCcCc------cCCCceeEEeccCCCcccceeccccccc---C-CcEEEEEEe
Confidence 444 77999999999999999999998532 222222222110 0 1134444 4 578899999
Q ss_pred ccccccc-CCccEEEEEcCCCceEEEEECCcEEEEecCCCCC---HHHHHHHHHHH
Q 025645 159 RDEVWKV-PIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYT---KDILYNLIDRL 210 (250)
Q Consensus 159 ~~~v~~l-p~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~---~~~~~~~~~~~ 210 (250)
++.|..+ |++++++|++ +..+++++++ +++|+|||||.+ ..++++|++..
T Consensus 130 ~~~v~~l~~~~~~v~a~s-d~~~~a~~~~-~~~gvQfHPE~~~~g~~l~~~F~~~~ 183 (186)
T 2ywj_A 130 APVVDKILSDDVEVIARD-GDKIVGVKQG-KYMALSFHPELSEDGYKVYKYFVENC 183 (186)
T ss_dssp CCEEEEECCTTCEEEEEE-TTEEEEEEET-TEEEESSCGGGSTTHHHHHHHHHHHH
T ss_pred cceeeecCCCCeEEEEEE-CCEEEEEeeC-CEEEEECCCCcCCchhHHHHHHHHHH
Confidence 9999888 9999999999 5668999875 799999999975 56888888765
No 19
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.96 E-value=6.5e-31 Score=226.78 Aligned_cols=236 Identities=11% Similarity=0.079 Sum_probs=143.0
Q ss_pred ccceEEEEecCCCChhHHH-hhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhH--
Q 025645 5 EEKRYALFLAAKDSDYVLK-VYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWI-- 81 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~-- 81 (250)
++..|+|+........... .+.-....+.++|+++|..+.+++...+.......++++||||||||+.++.+. .|-
T Consensus 29 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~-~~~~~ 107 (315)
T 1l9x_A 29 KKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRS-DYAKV 107 (315)
T ss_dssp CCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTC-HHHHH
T ss_pred CCCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChh-hhhHH
Confidence 3457999865332211110 000012346789999999988876432100000113578999999999876432 222
Q ss_pred -HHHHHHHHHHHhc--CCcEEEEehHHHHHHHHcCceEEecCCCceeeE-EEEEEecCCCCCCcccccCCCCCc------
Q 025645 82 -LKLCFMLQTLDAM--QKKVLGICFGHQVLCRALGGKVGKAYTGWDIGL-RRVRIVNDLAPCSFLEDLGEIPGS------ 151 (250)
Q Consensus 82 -~~~~~~i~~~~~~--~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~l~~~~~~l~~~------ 151 (250)
..+.+.+++..+. ++||||||+|||+|+.++||++..... .+.|. .++........+++|+. +|+.
T Consensus 108 ~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~~-~~~g~~~p~~~~~~~~~s~L~~~---~~~~~~~~l~ 183 (315)
T 1l9x_A 108 AKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTAT-DTVDVAMPLNFTGGQLHSRMFQN---FPTELLLSLA 183 (315)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEEE-EEEEEEECCEECSTTTTCSTTTT---SCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCccccccc-cccCCCCCeeeccCCCCChHHHh---cChhhhhhcc
Confidence 2233333333333 599999999999999999998654432 22343 45555433346788887 6643
Q ss_pred --eEEEeeeccccc--------ccCCccEEEEEcCCCceEEE---EEC-CcEEEEecCCCCCH----H--HHHHHHHHHh
Q 025645 152 --LSIMECHRDEVW--------KVPIGAEVIGFSDKTGVEMF---TIG-DHILGIQGHPEYTK----D--ILYNLIDRLL 211 (250)
Q Consensus 152 --~~~~~~H~~~v~--------~lp~~~~~la~s~~~~v~~~---~~~-~~~~g~QfHPE~~~----~--~~~~~~~~~~ 211 (250)
..++++|+++|. .+|++++++|.++++.++++ +++ .+++|+|||||... . -...-.+.+.
T Consensus 184 ~~~~~~~~H~~~V~~~~~~~~~~l~~g~~v~A~s~dg~ve~i~~i~~~~~~i~GVQfHPE~~~~e~~~~~~~p~s~~a~~ 263 (315)
T 1l9x_A 184 VEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVK 263 (315)
T ss_dssp HSCCEEEEEEEECBHHHHHTCHHHHHHEEEEEEEESSSCEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCCHHHHH
T ss_pred ccceEEEhhhhhcCccccccccccCCCCEEEEEcCCCCEEEEEEeccCCCCEEEEEeCCCCCcccccccccCCccHHHHH
Confidence 124569999997 68999999999998887766 554 47999999999532 0 0000000000
Q ss_pred cCCCccHHHHHHHHhhccccCCcHHHHHHHHHHH
Q 025645 212 NNNSIEREFAENAKFGLEIAEPDRKCWEKICRNF 245 (250)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 245 (250)
....+-+.|++.++++.+.+....++.+.+|+||
T Consensus 264 ~~~~lf~~Fv~~a~~~~~~f~~~~~~~~~liyn~ 297 (315)
T 1l9x_A 264 TAFYLAEFFVNEARKNNHHFKSESEEEKALIYQF 297 (315)
T ss_dssp HHHHHHHHHHHHHTTSCCCCSSHHHHHHHSGGGC
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHhhhccC
Confidence 0011224455666677777766677788899987
No 20
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.96 E-value=8.7e-31 Score=214.00 Aligned_cols=176 Identities=18% Similarity=0.191 Sum_probs=125.5
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
+||+||+.+... ..++.++|++.|+++++++ +++++.++|+||+||+.. +.+... ......
T Consensus 3 ~~I~iiD~g~~n----------~~si~~al~~~G~~~~v~~-------~~~~l~~~D~lilPG~g~-~~~~~~-~~~~~~ 63 (211)
T 4gud_A 3 QNVVIIDTGCAN----------ISSVKFAIERLGYAVTISR-------DPQVVLAADKLFLPGVGT-ASEAMK-NLTERD 63 (211)
T ss_dssp CCEEEECCCCTT----------HHHHHHHHHHTTCCEEEEC-------CHHHHHHCSEEEECCCSC-HHHHHH-HHHHTT
T ss_pred CEEEEEECCCCh----------HHHHHHHHHHCCCEEEEEC-------CHHHHhCCCEEEECCCCC-HHHHHH-HHHhcC
Confidence 689999876542 3567899999999988764 445678899999998532 211111 112334
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCC---------------------CceeeEEEEEEecCCCCCCccccc
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYT---------------------GWDIGLRRVRIVNDLAPCSFLEDL 145 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~---------------------~~~~g~~~i~~~~~~~~~~l~~~~ 145 (250)
+++.+.+.++|+||||+|||+|+.++|+.+.+... ..+.++..+... ..+++|.+
T Consensus 64 ~i~~~~~~~~PvlGIClG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~- 139 (211)
T 4gud_A 64 LIELVKRVEKPLLGICLGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQVK---EGHPLFNG- 139 (211)
T ss_dssp CHHHHHHCCSCEEEETHHHHTTSSEECCC----CCCEECCCSSSCEEEECCCTTSCSSEEEEECCEEC---TTCGGGTT-
T ss_pred hHHHHHHcCCCEEEEchhHhHHHHHhCCcccccCCccccceeccceEEEcccCCcceeeccceeeeee---ccChhhcC-
Confidence 56777888999999999999999999876654321 134455555554 35788888
Q ss_pred CCCCCceEEEeeecccccccCCccEEEEEcCCCceEEEE-ECCcEEEEecCCCCC----HHHHHHHHHHH
Q 025645 146 GEIPGSLSIMECHRDEVWKVPIGAEVIGFSDKTGVEMFT-IGDHILGIQGHPEYT----KDILYNLIDRL 210 (250)
Q Consensus 146 ~~l~~~~~~~~~H~~~v~~lp~~~~~la~s~~~~v~~~~-~~~~~~g~QfHPE~~----~~~~~~~~~~~ 210 (250)
++....++++|++.+ |.+..++|.++++...+.. .++++||+|||||.+ .+++++|++..
T Consensus 140 --l~~~~~~~~~H~~~v---~~~~~~~a~~~~g~~~~~~v~~~~v~GvQFHPE~s~~~G~~ll~nFl~~~ 204 (211)
T 4gud_A 140 --IEPDAYFYFVHSFAM---PVGDYTIAQCEYGQPFSAAIQAGNYYGVQFHPERSSKAGARLIQNFLELR 204 (211)
T ss_dssp --CCTTCCEEEEESEEC---CCCTTEEEEEESSSEEEEEEEETTEEEESSCGGGSHHHHHHHHHHHHHC-
T ss_pred --CCCCcEEEEEeeEEe---CCCCeEEEEecCCCeEEEEEeCCCEEEEEccCEecCccHHHHHHHHHHHh
Confidence 888899999999985 6677888988877654433 245899999999943 56899999754
No 21
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.96 E-value=1.6e-29 Score=205.02 Aligned_cols=169 Identities=18% Similarity=0.146 Sum_probs=121.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCC-----CceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEG-----ERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
|||+||+.+... + +++.++|++.| +++.+++. +++ .++|||||||| ++..+..+|.
T Consensus 1 m~I~iid~~~g~---------~-~s~~~~l~~~G~~~~~~~~~~~~~-------~~~-~~~dglilpG~-g~~~~~~~~l 61 (201)
T 1gpw_B 1 MRIGIISVGPGN---------I-MNLYRGVKRASENFEDVSIELVES-------PRN-DLYDLLFIPGV-GHFGEGMRRL 61 (201)
T ss_dssp CEEEEECCSSSC---------C-HHHHHHHHHHSTTBSSCEEEEECS-------CCS-SCCSEEEECCC-SCSHHHHHHH
T ss_pred CEEEEEecCCch---------H-HHHHHHHHHcCCCCCceEEEEECC-------Ccc-cCCCEEEECCC-CcHHHHHHHH
Confidence 479999755322 1 44677888888 77776652 123 67999999985 3322233444
Q ss_pred H--HHHHHHHHHHhcCCcEEEEehHHHHHHHHcC------------ceEEecC--CCceeeEEEEEEecCCCCCCccccc
Q 025645 82 L--KLCFMLQTLDAMQKKVLGICFGHQVLCRALG------------GKVGKAY--TGWDIGLRRVRIVNDLAPCSFLEDL 145 (250)
Q Consensus 82 ~--~~~~~i~~~~~~~~PilGIC~G~Qlla~a~g------------g~v~~~~--~~~~~g~~~i~~~~~~~~~~l~~~~ 145 (250)
. .+.++++++.+.++||||||+|||+|+.++| +++.+.. ..++.|++++...
T Consensus 62 ~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~g~~G~~~~l~~~~g~v~~~~~~~~~~~g~~~l~~~------------ 129 (201)
T 1gpw_B 62 RENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFK------------ 129 (201)
T ss_dssp HHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEETTEEEEECCCSSSEEEEECCCSSCSEEEEEEEEES------------
T ss_pred HhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhhccCCCCCCcceeeeEEEEcCCCCCCcccceeeEec------------
Confidence 3 2678889888899999999999999999986 4555443 2235566655443
Q ss_pred CCCC-CceEEEeeecccccccCCccEEEEEcCC--CceEEEEECCcEEEEecCCCCCH----HHHHHHHHHH
Q 025645 146 GEIP-GSLSIMECHRDEVWKVPIGAEVIGFSDK--TGVEMFTIGDHILGIQGHPEYTK----DILYNLIDRL 210 (250)
Q Consensus 146 ~~l~-~~~~~~~~H~~~v~~lp~~~~~la~s~~--~~v~~~~~~~~~~g~QfHPE~~~----~~~~~~~~~~ 210 (250)
.+ +.+.++++|++.|..+ +++++|++++ +.+++++++++++|+|||||.+. .++++|++..
T Consensus 130 --~~~~~~~v~~~H~~~v~~~--~~~vla~s~~~g~~~~a~~~~~~i~gvQfHPE~~~~~~~~l~~~f~~~~ 197 (201)
T 1gpw_B 130 --DTFPNGYYYFVHTYRAVCE--EEHVLGTTEYDGEIFPSAVRKGRILGFQFHPEKSSKIGRKLLEKVIECS 197 (201)
T ss_dssp --SSSCCEEEEEEESEEEEEC--GGGEEEEEEETTEEEEEEEEETTEEEESSCGGGSHHHHHHHHHHHHHHS
T ss_pred --cCCCCCeEEEECcceeccC--CCEEEEEEccCCceEEEEEECCCEEEEECCCcccCHhHHHHHHHHHHHh
Confidence 22 4578999999999655 7899999876 47999988779999999999764 4677776653
No 22
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.96 E-value=7.9e-29 Score=217.18 Aligned_cols=174 Identities=20% Similarity=0.194 Sum_probs=130.6
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
.+||+|++++.. ..+.++|++.|+++.+++...+ ++.-...++|||||+|||+++.+. ....
T Consensus 190 ~~~V~viD~G~k------------~ni~r~L~~~G~~v~vvp~~~~--~e~i~~~~~DGliLsGGPgdp~~~----~~~~ 251 (379)
T 1a9x_B 190 PFHVVAYDFGAK------------RNILRMLVDRGCRLTIVPAQTS--AEDVLKMNPDGIFLSNGPGDPAPC----DYAI 251 (379)
T ss_dssp CEEEEEEESSCC------------HHHHHHHHHTTEEEEEEETTCC--HHHHHTTCCSEEEECCCSBCSTTC----HHHH
T ss_pred CCEEEEEECCCh------------HHHHHHHHHCCCEEEEEeccCC--HHHHhhcCCCEEEEeCCCCChHHH----HHHH
Confidence 358999988543 2367889999998888764321 000011369999999999988643 4567
Q ss_pred HHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCCCCCCcccccCCCCCceEEEeeecccccc-
Q 025645 86 FMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWK- 164 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~- 164 (250)
++++++.+.++||||||+|||+|+.++||++.+++.+.+...+++.... .+ ..+.+.++|++.|..
T Consensus 252 ~~Ir~~~~~~~PILGIClG~QLLa~A~GG~v~k~~~gh~g~n~pv~~~~--------~g-----~v~its~~H~~aV~~~ 318 (379)
T 1a9x_B 252 TAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVE--------KN-----VVMITAQNHGFAVDEA 318 (379)
T ss_dssp HHHHHHTTSCCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETT--------TT-----EEEEEEEEEEEEECST
T ss_pred HHHHHHHHcCCCEEEECchHHHHHHHhCcEEEecccccccCceeeEecC--------CC-----cEEEEecCccceEecc
Confidence 8889998889999999999999999999999998655444445554221 01 223356789999975
Q ss_pred -cCCccEEEEEc-CCCceEEEEEC-CcEEEEecCCCCC------HHHHHHHHHHH
Q 025645 165 -VPIGAEVIGFS-DKTGVEMFTIG-DHILGIQGHPEYT------KDILYNLIDRL 210 (250)
Q Consensus 165 -lp~~~~~la~s-~~~~v~~~~~~-~~~~g~QfHPE~~------~~~~~~~~~~~ 210 (250)
+|+++++++.+ +++.+++++++ .+++|+|||||.. ..++++|++.+
T Consensus 319 ~Lp~~~~v~a~s~~Dg~ieai~~~~~pi~gVQFHPE~~~~p~d~~~Lf~~Fl~~~ 373 (379)
T 1a9x_B 319 TLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGNPEASPGPHDAAPLFDHFIELI 373 (379)
T ss_dssp TCCTTEEEEEEETTTCCEEEEEESSSSEEEESSCTTCSSSCSTTTHHHHHHHHHH
T ss_pred cCCCCeEEEEEeCCCCcEEEEEECCCCEEEEEeCCcCCCCcccHHHHHHHHHHHH
Confidence 89999999998 67889999985 4899999999954 46899998765
No 23
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.96 E-value=1.8e-29 Score=213.64 Aligned_cols=193 Identities=20% Similarity=0.172 Sum_probs=138.2
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC------CCCCCcCEEEEcCCCCCCCCCChh
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF------NDLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~------~~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
.||||+... . -.+.++|.++...+.++..+.+.++.++++...+.... ..++++||||||||+++. .
T Consensus 9 ~~Iaivg~y-~-~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~-----~ 81 (273)
T 2w7t_A 9 VRIAFVGKY-L-QDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGNR-----G 81 (273)
T ss_dssp EEEEEEECC-H-HHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTTT-----T
T ss_pred CEEEEEeCC-C-cCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCCc-----C
Confidence 689998422 1 12334566677777777777788898888776443221 246689999999997652 2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEe-----cC-C---------------------CceeeEEEEEEe
Q 025645 81 ILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGK-----AY-T---------------------GWDIGLRRVRIV 133 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~-----~~-~---------------------~~~~g~~~i~~~ 133 (250)
.....++++.+.+.++|+||||+|||+|+.++||++.. .. . ..+.|+++++++
T Consensus 82 ~~~~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~v~~~ 161 (273)
T 2w7t_A 82 VDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGACDVYIV 161 (273)
T ss_dssp HHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEEEEEEEEC
T ss_pred chhHHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccCCcccccceEEEEe
Confidence 34677889999888999999999999999999998731 00 0 015789999886
Q ss_pred cCCCCCCcccccCCCCCceEEEe--eeccccc-----cc-CCccEEEEEcCC----C-ceEEEEECC-c-EEEEecCCCC
Q 025645 134 NDLAPCSFLEDLGEIPGSLSIME--CHRDEVW-----KV-PIGAEVIGFSDK----T-GVEMFTIGD-H-ILGIQGHPEY 198 (250)
Q Consensus 134 ~~~~~~~l~~~~~~l~~~~~~~~--~H~~~v~-----~l-p~~~~~la~s~~----~-~v~~~~~~~-~-~~g~QfHPE~ 198 (250)
.. .+.+++. ++....+++ .|++.|. .+ |++++++|++++ + .++++++++ + ++|+|||||.
T Consensus 162 ~~--~s~l~~~---~~~~~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~ 236 (273)
T 2w7t_A 162 EK--SSIMAKI---YSKSNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEF 236 (273)
T ss_dssp CT--TSHHHHH---TTTCSEEEEEEEECCEECGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGG
T ss_pred cC--CcHHHHH---hCCCceEEeecccccccCHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCc
Confidence 31 3456554 454444544 6677663 36 789999999988 4 799999875 4 6699999994
Q ss_pred C------HHHHHHHHHHHh
Q 025645 199 T------KDILYNLIDRLL 211 (250)
Q Consensus 199 ~------~~~~~~~~~~~~ 211 (250)
. ..++++|++...
T Consensus 237 ~~~~~~~~~l~~~Fv~~~~ 255 (273)
T 2w7t_A 237 ISTPMDPAPTYLSFMAAAA 255 (273)
T ss_dssp SCBTTBCCHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHH
Confidence 3 578999988664
No 24
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.96 E-value=3.2e-28 Score=198.88 Aligned_cols=180 Identities=16% Similarity=0.187 Sum_probs=133.3
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCC----ChhHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGN----DNWIL 82 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~----~~~~~ 82 (250)
+||+||..+..... ..+.++|+++|.++.++... +++.++|+||||||+....+. ..+..
T Consensus 3 ~~i~il~~~~~~~~---------~~~~~~l~~~g~~~~~~~~~-------~~~~~~d~lil~Gg~~~~~~~~~~~~~~~~ 66 (213)
T 3d54_D 3 PRACVVVYPGSNCD---------RDAYHALEINGFEPSYVGLD-------DKLDDYELIILPGGFSYGDYLRPGAVAARE 66 (213)
T ss_dssp CEEEEECCTTEEEH---------HHHHHHHHTTTCEEEEECTT-------CCCSSCSEEEECEECGGGGCSSTTHHHHTS
T ss_pred cEEEEEEcCCCCcc---------HHHHHHHHHCCCEEEEEecC-------CCcccCCEEEECCCCchhhhhccccccccH
Confidence 68999986654321 12467888899888776421 246789999999996532211 11224
Q ss_pred HHHHHHHHHHhcCCcEEEEehHHHHHHHH--cCceEEecCCC-ceeeEEEEEEecCCCCCCcccccCCCCC--ceEEEee
Q 025645 83 KLCFMLQTLDAMQKKVLGICFGHQVLCRA--LGGKVGKAYTG-WDIGLRRVRIVNDLAPCSFLEDLGEIPG--SLSIMEC 157 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGIC~G~Qlla~a--~gg~v~~~~~~-~~~g~~~i~~~~~~~~~~l~~~~~~l~~--~~~~~~~ 157 (250)
.+.++++++.+.++||||||+|+|+|+.+ ++|++.+.+.. ++.|++++++.. ..+++|++ +++ .+.+..+
T Consensus 67 ~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~~v~~~~--~~~~l~~~---~~~~~~~~~~~~ 141 (213)
T 3d54_D 67 KIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVEN--NDTPFTNA---FEKGEKIRIPIA 141 (213)
T ss_dssp TTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEEEEEECC--CSSTTSTT---SCTTCEEEEECC
T ss_pred HHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeEEEEeCC--CCCceeec---cCCCCEEEEEee
Confidence 56788888888899999999999999999 99999887643 488999999863 25678887 664 5666668
Q ss_pred e---cccccccCCccEEEEEcCC-----CceEEEEE-CCcEEEEecCCCCCH----------HHHHHHHHH
Q 025645 158 H---RDEVWKVPIGAEVIGFSDK-----TGVEMFTI-GDHILGIQGHPEYTK----------DILYNLIDR 209 (250)
Q Consensus 158 H---~~~v~~lp~~~~~la~s~~-----~~v~~~~~-~~~~~g~QfHPE~~~----------~~~~~~~~~ 209 (250)
| ++.+ .|+++.++|++++ +.++|+++ +++++|+|||||.+. .++++|++.
T Consensus 142 H~~~s~~~--~~~~~~~~a~~~~~ng~~~~i~a~~~~~~~~~gvQfHPE~~~~~~~~~~~g~~l~~~f~~~ 210 (213)
T 3d54_D 142 HGFGRYVK--IDDVNVVLRYVKDVNGSDERIAGVLNESGNVFGLMPHPERAVEELIGGEDGKKVFQSILNY 210 (213)
T ss_dssp BSSCEEEC--SSCCEEEEEESSCSSCCGGGEEEEECSSSCEEEECSCSTTTTSTTTTCSTTSHHHHHHHHH
T ss_pred cCceEEEe--cCCCcEEEEEcCCCCCCccceeEEEcCCCCEEEEeCCHHHhcCHhhhcCccHHHHHHHHHH
Confidence 9 5555 2578999999876 57999987 568999999999653 567777654
No 25
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.96 E-value=3.8e-29 Score=202.70 Aligned_cols=164 Identities=16% Similarity=0.110 Sum_probs=121.9
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhH--HHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWI--LKL 84 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~--~~~ 84 (250)
+||+|++.+... + ..+.++|++.|.++.++. .++++.++||||||||. ++.+..+|. ..+
T Consensus 3 ~~I~iid~~~~~---------~-~~~~~~l~~~G~~~~~~~-------~~~~l~~~d~lil~G~g-~~~~~~~~l~~~~~ 64 (200)
T 1ka9_H 3 MKALLIDYGSGN---------L-RSAAKALEAAGFSVAVAQ-------DPKAHEEADLLVLPGQG-HFGQVMRAFQESGF 64 (200)
T ss_dssp CEEEEECSSCSC---------H-HHHHHHHHHTTCEEEEES-------STTSCSSCSEEEECCCS-CHHHHHHTTSSSCT
T ss_pred cEEEEEeCCCcc---------H-HHHHHHHHHCCCeEEEec-------ChHHcccCCEEEECCCC-cHHHHHHHHHhcCH
Confidence 689999654222 2 346789999999887764 12356789999998843 221122333 226
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHH---cC---------ceEEecC--CCceeeEEEEEEecCCCCCCcccccCCCCC
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRA---LG---------GKVGKAY--TGWDIGLRRVRIVNDLAPCSFLEDLGEIPG 150 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a---~g---------g~v~~~~--~~~~~g~~~i~~~~~~~~~~l~~~~~~l~~ 150 (250)
.++++++.+.++||||||+|||+|+.+ +| |++.+.+ ..++.|++++++++ . |.+ +++
T Consensus 65 ~~~i~~~~~~~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~~G~~~v~~~~-----~-l~~---~~~ 135 (200)
T 1ka9_H 65 VERVRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNALEFGG-----A-FAP---LTG 135 (200)
T ss_dssp HHHHHHHHHTTCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEEEEEECEECG-----G-GGG---GTT
T ss_pred HHHHHHHHHcCCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECCCCCCCceeEEEEEech-----h-hhc---CCC
Confidence 778888888999999999999999999 58 7888775 45689999998873 3 666 566
Q ss_pred ceEEEeeecccccccCCccEEEEEcCC--CceEEEEECCcEEEEecCCCCCHH
Q 025645 151 SLSIMECHRDEVWKVPIGAEVIGFSDK--TGVEMFTIGDHILGIQGHPEYTKD 201 (250)
Q Consensus 151 ~~~~~~~H~~~v~~lp~~~~~la~s~~--~~v~~~~~~~~~~g~QfHPE~~~~ 201 (250)
+.++++|++.+ .++++ .+ |++++ +.++++.++++++|+|||||.+.+
T Consensus 136 -~~~~~~Hs~~~-~~~~~-~v-a~s~~~g~~~~~~~~~~~i~gvQfHPE~~~~ 184 (200)
T 1ka9_H 136 -RHFYFANSYYG-PLTPY-SL-GKGEYEGTPFTALLAKENLLAPQFHPEKSGK 184 (200)
T ss_dssp -CEEEEEESEEC-CCCTT-CC-EEEEETTEEEEEEEECSSEEEESSCTTSSHH
T ss_pred -CCEEEeccccc-CCCCC-cE-EEEEeCCeEEEEEEeeCCEEEEecCCCcCcc
Confidence 88999999998 65443 56 87776 478888887799999999998753
No 26
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.96 E-value=4.7e-29 Score=201.46 Aligned_cols=176 Identities=15% Similarity=0.186 Sum_probs=125.0
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
|||+|++... +|... .++|++.|+++.++.. ++++.++|+||+|||+.+.+++..|...+.+
T Consensus 2 m~I~il~~~~----------~~~~~-~~~l~~~g~~~~~~~~-------~~~l~~~d~iil~GG~~~~~~~~~~~~~~~~ 63 (196)
T 2nv0_A 2 LTIGVLGLQG----------AVREH-IHAIEACGAAGLVVKR-------PEQLNEVDGLILPGGESTTMRRLIDTYQFME 63 (196)
T ss_dssp CEEEEECSSS----------CCHHH-HHHHHHTTCEEEEECS-------GGGGGGCSEEEECCSCHHHHHHHHHHTTCHH
T ss_pred cEEEEEEccC----------CcHHH-HHHHHHCCCEEEEeCC-------hHHHhhCCEEEECCCChhhHHHHhhhHHHHH
Confidence 5899997421 23333 4788888988776642 2346789999999998665543344445578
Q ss_pred HHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecC--CCC------CCcccccCCCCCceEEEeee
Q 025645 87 MLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVND--LAP------CSFLEDLGEIPGSLSIMECH 158 (250)
Q Consensus 87 ~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~--~~~------~~l~~~~~~l~~~~~~~~~H 158 (250)
+++.+.+.++|+||||+|||+|+.++||.+.+ ..|+.+++.+.. +.. +..+.+ ++.++.++++|
T Consensus 64 ~i~~~~~~~~pilgIC~G~q~l~~~~gg~~~~-----~lg~~~~~~~~~~~g~~~~~~~~~~~~~~---~g~~~~~~~~h 135 (196)
T 2nv0_A 64 PLREFAAQGKPMFGTCAGLIILAKEIAGSDNP-----HLGLLNVVVERNSFGRQVDSFEADLTIKG---LDEPFTGVFIR 135 (196)
T ss_dssp HHHHHHHTTCCEEEETHHHHHHSBCCC----C-----CCCCSCEEEECCCSCTTTSEEEEEECCTT---CSSCEEEEEES
T ss_pred HHHHHHHCCCcEEEECHHHHHHHHHhcCCCCC-----cccCCceeEeccCCCcccccccCCccccc---CCCceEEEEEe
Confidence 88999899999999999999999999997532 234333333211 000 123444 56788899999
Q ss_pred cccccccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCH--HHHHHHHHHH
Q 025645 159 RDEVWKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTK--DILYNLIDRL 210 (250)
Q Consensus 159 ~~~v~~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~--~~~~~~~~~~ 210 (250)
++.|..+|++++++|.+ ++.+++++++ +++|+|||||++. .++++|++..
T Consensus 136 ~~~v~~~~~~~~v~a~~-d~~~~a~~~~-~~~gvQfHPE~~~~~~l~~~fl~~~ 187 (196)
T 2nv0_A 136 APHILEAGENVEVLSEH-NGRIVAAKQG-QFLGCSFHPELTEDHRVTQLFVEMV 187 (196)
T ss_dssp CCEEEEECTTCEEEEEE-TTEEEEEEET-TEEEESSCTTSSSCCHHHHHHHHHH
T ss_pred cceecccCCCcEEEEEE-CCEEEEEEEC-CEEEEEECCccCCchHHHHHHHHHH
Confidence 99988889999999998 4557888875 7999999999864 5888888765
No 27
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.95 E-value=3.8e-29 Score=205.47 Aligned_cols=179 Identities=16% Similarity=0.190 Sum_probs=128.4
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
++++||+|+.... +|.+ +.++|++.|.++.++.. ++++.++||||||||+.+.+++..|...
T Consensus 21 ~~~~~I~il~~~~----------~~~~-~~~~l~~~G~~~~~~~~-------~~~l~~~Dglil~GG~~~~~~~~~~~~~ 82 (219)
T 1q7r_A 21 QSNMKIGVLGLQG----------AVRE-HVRAIEACGAEAVIVKK-------SEQLEGLDGLVLPGGESTTMRRLIDRYG 82 (219)
T ss_dssp CCCCEEEEESCGG----------GCHH-HHHHHHHTTCEEEEECS-------GGGGTTCSEEEECCCCHHHHHHHHHHTT
T ss_pred CCCCEEEEEeCCC----------CcHH-HHHHHHHCCCEEEEECC-------HHHHhhCCEEEECCCChHHHHHHhhhhH
Confidence 4567899995411 2233 24678888998877652 2346789999999998655443344445
Q ss_pred HHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecC--CCC------CCcccccCCCCCceEEE
Q 025645 84 LCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVND--LAP------CSFLEDLGEIPGSLSIM 155 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~--~~~------~~l~~~~~~l~~~~~~~ 155 (250)
+.++++++.+.++||||||+|||+|+.++||.+.+ ..|+.++++... +.. +..+.+ ++..+.++
T Consensus 83 ~~~~i~~~~~~~~PilGIC~G~QlL~~~~gg~~~~-----~lg~~~~~~~~~~~g~~~~~~~~~~~~~g---~g~~~~~~ 154 (219)
T 1q7r_A 83 LMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYDEP-----HLGLMDITVERNSFGRQRESFEAELSIKG---VGDGFVGV 154 (219)
T ss_dssp CHHHHHHHHHTTCCEEEETTHHHHHEEEEESSCCC-----CCCCEEEEEECHHHHCCCCCEEEEEEETT---TEEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEECHHHHHHHHHhCCCCcC-----CcCccceEEEecCCCccccceecCcccCC---CCCceEEE
Confidence 57889999999999999999999999999987632 234333333210 000 112333 44578889
Q ss_pred eeecccccccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCH--HHHHHHHHHH
Q 025645 156 ECHRDEVWKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTK--DILYNLIDRL 210 (250)
Q Consensus 156 ~~H~~~v~~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~--~~~~~~~~~~ 210 (250)
++|++.|..+|++++++|.+ ++.+++++++ +++|+|||||++. .++++|++..
T Consensus 155 ~~h~~~v~~l~~~~~v~a~s-dg~~ea~~~~-~i~GvQfHPE~~~~~~l~~~fl~~~ 209 (219)
T 1q7r_A 155 FIRAPHIVEAGDGVDVLATY-NDRIVAARQG-QFLGCSFHPELTDDHRLMQYFLNMV 209 (219)
T ss_dssp ESSCCEEEEECTTCEEEEEE-TTEEEEEEET-TEEEESSCGGGSSCCHHHHHHHHHH
T ss_pred EEecceeeccCCCcEEEEEc-CCEEEEEEEC-CEEEEEECcccCCCHHHHHHHHHHH
Confidence 99999988899999999998 5678999985 7999999999764 5888888764
No 28
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.95 E-value=5.7e-28 Score=194.22 Aligned_cols=176 Identities=14% Similarity=0.126 Sum_probs=123.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
+++|+|+.... ++ ..+.++|++.|.++.+++ .++++.++||||||||+....+...+...+.
T Consensus 2 ~p~Igi~~~~~----------~~-~~~~~~l~~~G~~~~~~~-------~~~~l~~~dglil~GG~~~~~~~~~~~~~~~ 63 (191)
T 2ywd_A 2 RGVVGVLALQG----------DF-REHKEALKRLGIEAKEVR-------KKEHLEGLKALIVPGGESTTIGKLAREYGIE 63 (191)
T ss_dssp -CCEEEECSSS----------CH-HHHHHHHHTTTCCCEEEC-------SGGGGTTCSEEEECSSCHHHHHHHHHHTTHH
T ss_pred CcEEEEEecCC----------ch-HHHHHHHHHCCCEEEEeC-------ChhhhccCCEEEECCCChhhhHHhhhhhhHH
Confidence 36899997532 12 235789999999988775 2235678999999999533222222223467
Q ss_pred HHHHHHHhcC-CcEEEEehHHHHHHHHcCc-eEEecCCCceeeEEEEEEecC--CCC------CCcccccCCCCCceEEE
Q 025645 86 FMLQTLDAMQ-KKVLGICFGHQVLCRALGG-KVGKAYTGWDIGLRRVRIVND--LAP------CSFLEDLGEIPGSLSIM 155 (250)
Q Consensus 86 ~~i~~~~~~~-~PilGIC~G~Qlla~a~gg-~v~~~~~~~~~g~~~i~~~~~--~~~------~~l~~~~~~l~~~~~~~ 155 (250)
++++++.+.+ +||||||+|||+|+.++|+ .+. ...|+.+.+.... +.. +..+.+ + ..+.++
T Consensus 64 ~~i~~~~~~~~~PilGiC~G~Q~l~~~~gg~~~~-----~~lg~~~~~~~~~~~g~~~~~~~~~~~~~~---~-~~~~~~ 134 (191)
T 2ywd_A 64 DEVRKRVEEGSLALFGTCAGAIWLAKEIVGYPEQ-----PRLGVLEAWVERNAFGRQVESFEEDLEVEG---L-GSFHGV 134 (191)
T ss_dssp HHHHHHHHTTCCEEEEETHHHHHHEEEETTCTTC-----CCCCCEEEEEETTCSCCSSSEEEEEEEETT---T-EEEEEE
T ss_pred HHHHHHHHCCCCeEEEECHHHHHHHHHhCCCCCC-----ccccccceEEEcCCcCCccccccccccccC---C-CceeEE
Confidence 7888888889 9999999999999999998 431 1234433333211 000 112233 4 467788
Q ss_pred eeecccccccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCH--HHHHHHHHHH
Q 025645 156 ECHRDEVWKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTK--DILYNLIDRL 210 (250)
Q Consensus 156 ~~H~~~v~~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~--~~~~~~~~~~ 210 (250)
++|++.+..+|++++++|.+ ++.+++++++ +++|+|||||.+. .++++|++..
T Consensus 135 ~~Hs~~v~~l~~~~~~~a~~-~~~~~a~~~~-~~~gvQfHPE~~~~~~l~~~f~~~~ 189 (191)
T 2ywd_A 135 FIRAPVFRRLGEGVEVLARL-GDLPVLVRQG-KVLASSFHPELTEDPRLHRYFLELA 189 (191)
T ss_dssp EESCCEEEEECTTCEEEEEE-TTEEEEEEET-TEEEESSCGGGSSCCHHHHHHHHHH
T ss_pred EEcccceeccCCCcEEEEEE-CCEEEEEEEC-CEEEEEeCCCCCCCcHHHHHHHHHh
Confidence 99999987789999999999 5778999987 5999999999653 6888888654
No 29
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.94 E-value=2.4e-27 Score=202.14 Aligned_cols=188 Identities=19% Similarity=0.188 Sum_probs=128.3
Q ss_pred cceEEEE-ecCCCChhHHHhhCCHHHHHHHHHhcCCC----ceEEEEeecCCCC------CCC-------CCCCcCEEEE
Q 025645 6 EKRYALF-LAAKDSDYVLKVYGGYFNVFVAAFGEEGE----RWDLFRVVEGDFP------DFN-------DLHKYDGFVI 67 (250)
Q Consensus 6 ~~riail-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----~~~~~~~~~~~~~------~~~-------~l~~~dglIi 67 (250)
.+||+|| ......+. | ..+.+.|+++|+ ++.++++...++. +++ .+.++|||||
T Consensus 25 ~~~Iavv~d~~~~~~s-------~-~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil 96 (289)
T 2v4u_A 25 ICSIALVGKYTKLRDC-------Y-ASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILV 96 (289)
T ss_dssp EEEEEEEESCSSCCGG-------G-HHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEecCcCCCcc-------H-HHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhCCEEEe
Confidence 4589998 44122220 1 134566666654 4566666543322 111 1567999999
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEe---cC------------------C-----
Q 025645 68 SGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGK---AY------------------T----- 121 (250)
Q Consensus 68 ~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~---~~------------------~----- 121 (250)
|||+++. +...+.++++.+.+.++||||||+|||+|+.++||++.. .+ .
T Consensus 97 ~GG~~~~-----~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~~~~ 171 (289)
T 2v4u_A 97 PGGFGIR-----GTLGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPGNL 171 (289)
T ss_dssp CSCCSST-----THHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBCCTTCS
T ss_pred cCCCCch-----hHHHHHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhhccccc
Confidence 9997652 246788899999999999999999999999999998841 10 0
Q ss_pred --CceeeEEEEEEecCCCCCCcccccCCCCCceEEEeee--c-----ccccccC-CccEEEEEcCCCc-eEEEEECC-c-
Q 025645 122 --GWDIGLRRVRIVNDLAPCSFLEDLGEIPGSLSIMECH--R-----DEVWKVP-IGAEVIGFSDKTG-VEMFTIGD-H- 188 (250)
Q Consensus 122 --~~~~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H--~-----~~v~~lp-~~~~~la~s~~~~-v~~~~~~~-~- 188 (250)
..+.|++++.+... .+.+++. ++..+.+..+| + +.+..+| ++++++|.++++. ++++++++ +
T Consensus 172 ~~~~~~g~~~v~~~~~--~s~l~~~---~~~~~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~~~p~ 246 (289)
T 2v4u_A 172 GGTMRLGIRRTVFKTE--NSILRKL---YGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPY 246 (289)
T ss_dssp SCBCEEEEEEEEESCS--CCHHHHH---TTSCSEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEESSSSC
T ss_pred CCccccceEEEEEecC--CCHHHHh---cCCCceEEEecccccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcCCCCe
Confidence 01257788888521 3456554 44434555454 4 5666789 9999999999997 99999975 4
Q ss_pred EEEEecCCCCC------HHHHHHHHHHHh
Q 025645 189 ILGIQGHPEYT------KDILYNLIDRLL 211 (250)
Q Consensus 189 ~~g~QfHPE~~------~~~~~~~~~~~~ 211 (250)
++|+|||||+. ..++++|++..+
T Consensus 247 ~lGvQfHPE~~~~~~~~~~lf~~Fv~~~~ 275 (289)
T 2v4u_A 247 FVGVQFHPEFSSRPMKPSPPYLGLLLAAT 275 (289)
T ss_dssp EEEESSBGGGGCBTTBCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCchHHHHHHHHHHHH
Confidence 56999999943 467888887653
No 30
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=6.3e-28 Score=196.68 Aligned_cols=177 Identities=12% Similarity=0.129 Sum_probs=123.2
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHH
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKL 84 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~ 84 (250)
.++||+|+.. .. +|.. +.+.|++.|+++.++.. .+++.++|+||||||+.+.++...|...+
T Consensus 19 ~~~~I~ii~~-~~---------~~~~-~~~~l~~~g~~~~~~~~-------~~~l~~~d~iil~GG~~~~~~~~~~~~~~ 80 (208)
T 2iss_D 19 SHMKIGVLGV-QG---------DVRE-HVEALHKLGVETLIVKL-------PEQLDMVDGLILPGGESTTMIRILKEMDM 80 (208)
T ss_dssp -CCEEEEECS-SS---------CHHH-HHHHHHHTTCEEEEECS-------GGGGGGCSEEEECSSCHHHHHHHHHHTTC
T ss_pred CCcEEEEEEC-CC---------chHH-HHHHHHHCCCEEEEeCC-------hHHHhhCCEEEECCCcHHHHHhhhhhhhH
Confidence 3578999953 11 2433 35677778988776641 23467899999999965444333344446
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCCceeeEEEEEEecCC--C------CCCcccccCCCC-CceEEE
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTGWDIGLRRVRIVNDL--A------PCSFLEDLGEIP-GSLSIM 155 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~--~------~~~l~~~~~~l~-~~~~~~ 155 (250)
.++|+++.+.++|+||||+|||+|+.++||... ...|+.+.+..... . .+..+.+ ++ .++.++
T Consensus 81 ~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~-----~~lg~~~~~v~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~ 152 (208)
T 2iss_D 81 DEKLVERINNGLPVFATCAGVILLAKRIKNYSQ-----EKLGVLDITVERNAYGRQVESFETFVEIPA---VGKDPFRAI 152 (208)
T ss_dssp HHHHHHHHHTTCCEEEETHHHHHHEEEEC---C-----CCCCCEEEEEETTTTCSGGGCEEEEECCGG---GCSSCEEEE
T ss_pred HHHHHHHHHCCCeEEEECHHHHHHHHHcCCCCC-----CCccccceEEEecCCCcccccccCCccccc---CCCCceEEE
Confidence 788898888999999999999999999998531 23444444443221 0 0122344 33 578899
Q ss_pred eeecccccccCCccEEEEEcCCCceEEEEECCcEEEEecCCCCCH--HHHHHHHHH
Q 025645 156 ECHRDEVWKVPIGAEVIGFSDKTGVEMFTIGDHILGIQGHPEYTK--DILYNLIDR 209 (250)
Q Consensus 156 ~~H~~~v~~lp~~~~~la~s~~~~v~~~~~~~~~~g~QfHPE~~~--~~~~~~~~~ 209 (250)
++|++.+..+|++++++|.+ ++.+++++.+ +++|+|||||++. .++++|++.
T Consensus 153 ~~h~~~v~~~~~~~~v~a~~-d~~~~a~~~~-~i~GvQfHPE~~~~~~l~~~fl~~ 206 (208)
T 2iss_D 153 FIRAPRIVETGKNVEILATY-DYDPVLVKEG-NILACTFHPELTDDLRLHRYFLEM 206 (208)
T ss_dssp ESSCCEEEEECSSCEEEEEE-TTEEEEEEET-TEEEESSCGGGSSCCHHHHHHHTT
T ss_pred EEeCcccccCCCCcEEEEEE-CCEEEEEEEC-CEEEEEeCCCcCCcHHHHHHHHHH
Confidence 99999987789999999998 5778999876 6999999999764 588888753
No 31
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.93 E-value=4.5e-27 Score=194.08 Aligned_cols=184 Identities=15% Similarity=0.128 Sum_probs=127.0
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcC---CCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhH
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEE---GERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
++++|+|+...... .+ +.++|++. |.++.++. .++++.++||||||||+.+.++...+.
T Consensus 2 ~~~~I~Il~~~~~~----------~~-~~~~l~~~~~~G~~~~~~~-------~~~~l~~~dglil~GG~~~~~~~~~~~ 63 (227)
T 2abw_A 2 SEITIGVLSLQGDF----------EP-HINHFIKLQIPSLNIIQVR-------NVHDLGLCDGLVIPGGESTTVRRCCAY 63 (227)
T ss_dssp CCEEEEEECTTSCC----------HH-HHHHHHTTCCTTEEEEEEC-------SHHHHHTCSEEEECCSCHHHHHHHTTH
T ss_pred CCcEEEEEeCCCCc----------HH-HHHHHHHhccCCeEEEEEc-------CccccccCCEEEECCCcHHHHHHHHHH
Confidence 45789999754221 11 35677777 87665553 123467799999999985544332232
Q ss_pred --HHHHHHHHHHHhc-CCcEEEEehHHHHHHHHcCceEEecC--CCceeeEEEEEEecCC--CC------CCcccccCCC
Q 025645 82 --LKLCFMLQTLDAM-QKKVLGICFGHQVLCRALGGKVGKAY--TGWDIGLRRVRIVNDL--AP------CSFLEDLGEI 148 (250)
Q Consensus 82 --~~~~~~i~~~~~~-~~PilGIC~G~Qlla~a~gg~v~~~~--~~~~~g~~~i~~~~~~--~~------~~l~~~~~~l 148 (250)
..+.++|+++.+. ++||||||+|||+|+.++||.+.... .....|+.+++..... .. ...+.+ +
T Consensus 64 d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~~~~~~~~~~g~~~~~~~~~~~~~~---~ 140 (227)
T 2abw_A 64 ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIIS---D 140 (227)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECC---C
T ss_pred hHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCceeEEEEecCCCcccccccccccccc---c
Confidence 4568889998899 99999999999999999998763321 1235666666554221 00 011122 2
Q ss_pred ----CCceEEEeeeccccccc-CCccEEEEEcC-----CCceEEEEECCcEEEEecCCCCC--HHHHHHHHHHH
Q 025645 149 ----PGSLSIMECHRDEVWKV-PIGAEVIGFSD-----KTGVEMFTIGDHILGIQGHPEYT--KDILYNLIDRL 210 (250)
Q Consensus 149 ----~~~~~~~~~H~~~v~~l-p~~~~~la~s~-----~~~v~~~~~~~~~~g~QfHPE~~--~~~~~~~~~~~ 210 (250)
+..+..++.|++.|..+ |++++++|+++ ++.+++++.+ +++|+|||||++ ..++++|++..
T Consensus 141 ~~~~g~~~~~~~~h~~~v~~~~~~~~~vla~~~~~~~g~~~~~a~~~~-~v~gvQfHPE~~~~~~l~~~Fl~~~ 213 (227)
T 2abw_A 141 SSAFKKDLTAACIRAPYIREILSDEVKVLATFSHESYGPNIIAAVEQN-NCLGTVFHPELLPHTAFQQYFYEKV 213 (227)
T ss_dssp CTTCCTTCEEEEESCCEEEEECCTTCEEEEEEEETTTEEEEEEEEEET-TEEEESSCGGGSSCCHHHHHHHHHH
T ss_pred cccCCCceeEEEEEcceEeecCCCCcEEEEEcccccCCCCceEEEEEC-CEEEEEECCeeCCCcHHHHHHHHHH
Confidence 35677888999988777 99999999986 4567888875 699999999976 46888888764
No 32
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.93 E-value=1.3e-25 Score=201.52 Aligned_cols=192 Identities=18% Similarity=0.177 Sum_probs=142.0
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCCCCCCCChh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
..+||++.--... .++|.++...+..+..+.+.++.+.|+...++.. .+.++++||||+|||+++. .
T Consensus 293 ~v~IalVGKY~~l---~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G~~-----~ 364 (535)
T 3nva_A 293 TINIALVGKYTKL---KDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGSR-----G 364 (535)
T ss_dssp EEEEEEEESCTTS---GGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCSST-----T
T ss_pred eeEEEEEecCcCC---chhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCCCc-----c
Confidence 4679988743332 4567777777777777788899999887754322 2568899999999998654 2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecC--------------------C---------CceeeEEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAY--------------------T---------GWDIGLRRVR 131 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~--------------------~---------~~~~g~~~i~ 131 (250)
...+.++++++.+.++|+||||+|||+|+.++||++.... . ..+.|.+++.
T Consensus 365 ~~g~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~~~~pvI~~m~eq~~~~~~ggtmrlg~h~v~ 444 (535)
T 3nva_A 365 AEGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKII 444 (535)
T ss_dssp HHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTTCSCEEEECBCSSSCBCSSCCCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEECcchhHHHHHhhccccCccCCcccccCCCCCCCeeecchhcccccccCCccccCceEEE
Confidence 4678889999999999999999999999999999873210 0 1234788888
Q ss_pred EecCCCCCCcccccCCCCCceEEEeeecccccc-----c-CCccEEEEEcCCCceEEEEECC-c-EEEEecCCCC-----
Q 025645 132 IVNDLAPCSFLEDLGEIPGSLSIMECHRDEVWK-----V-PIGAEVIGFSDKTGVEMFTIGD-H-ILGIQGHPEY----- 198 (250)
Q Consensus 132 ~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~~-----l-p~~~~~la~s~~~~v~~~~~~~-~-~~g~QfHPE~----- 198 (250)
+.+++....+|+. +.+...+.|++.|.+ + +++++++|.++++.++|+++++ + ++|+|||||+
T Consensus 445 l~~gS~L~~iyG~-----~~I~erHrHryeVNs~h~q~l~~~GL~vsA~s~DG~IEAIE~~~~pf~vGVQfHPE~~~~p~ 519 (535)
T 3nva_A 445 LKEGTIAYQLYGK-----KVVYERHRHRYEVNPKYVDILEDAGLVVSGISENGLVEIIELPSNKFFVATQAHPEFKSRPT 519 (535)
T ss_dssp ECTTSHHHHHHTS-----SEEEEEEEECCEECHHHHHHHHHTTCEEEEECTTCCEEEEECTTSSCEEEESSCGGGGCCSS
T ss_pred EcCCCcHHHHhCC-----CeeeecccccceechHHHhhcccCCeEEEEEeCCCCEEEEEeCCCCcEEEEEeCCEecCCCC
Confidence 8753222223322 345566777877732 3 7899999999999999999876 5 7999999994
Q ss_pred -CHHHHHHHHHHH
Q 025645 199 -TKDILYNLIDRL 210 (250)
Q Consensus 199 -~~~~~~~~~~~~ 210 (250)
+..+|++|++..
T Consensus 520 ~~~~LF~~Fv~Aa 532 (535)
T 3nva_A 520 NPSPIYLGFIRAV 532 (535)
T ss_dssp SCCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHH
Confidence 356899998765
No 33
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.92 E-value=2.4e-26 Score=211.96 Aligned_cols=177 Identities=12% Similarity=0.068 Sum_probs=128.6
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCC-CCCCCChhH--HH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPY-DAYGNDNWI--LK 83 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~-~~~~~~~~~--~~ 83 (250)
++|+|++.+... ...+.++|++.|.++.+++.. ....+.++||||||||.. +.. ..+. ..
T Consensus 5 ~~I~Iid~~~g~----------~~~~~~~l~~~G~~~~vv~~~-----~~~~l~~~DglILpGgG~~~~~--~~~l~~~~ 67 (555)
T 1jvn_A 5 PVVHVIDVESGN----------LQSLTNAIEHLGYEVQLVKSP-----KDFNISGTSRLILPGVGNYGHF--VDNLFNRG 67 (555)
T ss_dssp CEEEEECCSCSC----------CHHHHHHHHHTTCEEEEESSG-----GGCCSTTCSCEEEEECSCHHHH--HHHHHHTT
T ss_pred CEEEEEECCCCC----------HHHHHHHHHHCCCEEEEECCc-----cccccccCCEEEECCCCchHhH--hhhhhhcc
Confidence 589999754211 124678889999988776521 112367899999998532 211 1111 12
Q ss_pred HHHHHHHHHhcCCcEEEEehHHHHHHHHc------------CceEEecC----CCceeeEEEEEEecCCCCCCcccccCC
Q 025645 84 LCFMLQTLDAMQKKVLGICFGHQVLCRAL------------GGKVGKAY----TGWDIGLRRVRIVNDLAPCSFLEDLGE 147 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G~Qlla~a~------------gg~v~~~~----~~~~~g~~~i~~~~~~~~~~l~~~~~~ 147 (250)
+.++++++.+.++|+||||+|||+|+.++ ||++.+.+ ..++.||++++++ +++|.+
T Consensus 68 ~~~~i~~~~~~g~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~~v~~~-----~~L~~~--- 139 (555)
T 1jvn_A 68 FEKPIREYIESGKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPS-----ENLFFG--- 139 (555)
T ss_dssp CHHHHHHHHHTTCCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEECCCCC-----TTCCTT---
T ss_pred HHHHHHHHHHcCCcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCCccccceEEEEc-----CHHHhh---
Confidence 56788888888999999999999999998 78888754 2357899887653 678887
Q ss_pred CCCceEEEeeeccccccc-------CCccEEEEEcCC---CceEEEEECCcEEEEecCCCCCHH----HHHHHHHH
Q 025645 148 IPGSLSIMECHRDEVWKV-------PIGAEVIGFSDK---TGVEMFTIGDHILGIQGHPEYTKD----ILYNLIDR 209 (250)
Q Consensus 148 l~~~~~~~~~H~~~v~~l-------p~~~~~la~s~~---~~v~~~~~~~~~~g~QfHPE~~~~----~~~~~~~~ 209 (250)
+++.+.++++|++.+..+ |+++.++|.++. +.+++++. ++++|+|||||.+.+ ++++|++.
T Consensus 140 l~~~~~~~~vHS~~~~~i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~-~~i~GvQFHPE~s~~~g~~l~~~Fl~~ 214 (555)
T 1jvn_A 140 LDPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNK-NNIFATQFHPEKSGKAGLNVIENFLKQ 214 (555)
T ss_dssp CCTTSCEEEEESEECBCCHHHHHHHHHTTCEEEEEEETTEEEEEEEEE-TTEEEESSBGGGSHHHHHHHHHHHHTT
T ss_pred CCCCceEEEEEEEEEEecccccccCCCCCEEEEEEcCCCCCeEEEEEe-CCEEEEEeCcEecChhHHHHHHHHHhc
Confidence 777777888898887532 577899998874 45788885 579999999998754 88888764
No 34
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.92 E-value=3.1e-25 Score=202.07 Aligned_cols=190 Identities=18% Similarity=0.181 Sum_probs=131.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC-C-C-CCCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP-D-F-NDLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-~-~-~~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
.+|+++.... .+.++|.++...+.+++.+.|.++.++++...+.. . . +.+.++||||||||++++. ...
T Consensus 301 v~I~ivgkyv---~l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfGd~~-----~~g 372 (550)
T 1vco_A 301 VKIAIAGKYV---KMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVRG-----IEG 372 (550)
T ss_dssp EEEEEEESCC------CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSSTT-----HHH
T ss_pred eEEcccCCeE---EEEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCCCcc-----hhh
Confidence 4566654321 23455656677777788788889988877654321 1 1 2367899999999987753 346
Q ss_pred HHHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCC-----------------------------ceeeEEEEEEec
Q 025645 84 LCFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTG-----------------------------WDIGLRRVRIVN 134 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~-----------------------------~~~g~~~i~~~~ 134 (250)
..++++++.+.++|+||||+|||+|+.++||++.+++.. ...|++++.+.+
T Consensus 373 ~i~~ir~a~e~~iPiLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~ 452 (550)
T 1vco_A 373 KVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKP 452 (550)
T ss_dssp HHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECT
T ss_pred hHHHHHHHHHCCCcEEEECcCHHHHHHHhCcccccCCccccccccCCCCCCeEEeccccccccccCCcccccceEEEEcc
Confidence 678899999899999999999999999999877643211 012666777653
Q ss_pred CCCCCCcccccCCCC-CceEEEeeeccccc-----ccC-CccEEEEEcCCC------ceEEEEECC-cEE-EEecCCCC-
Q 025645 135 DLAPCSFLEDLGEIP-GSLSIMECHRDEVW-----KVP-IGAEVIGFSDKT------GVEMFTIGD-HIL-GIQGHPEY- 198 (250)
Q Consensus 135 ~~~~~~l~~~~~~l~-~~~~~~~~H~~~v~-----~lp-~~~~~la~s~~~------~v~~~~~~~-~~~-g~QfHPE~- 198 (250)
.+++..+ .. ..+...+.|.|.|. .++ ++++++|.+.++ .++++++++ |+| |+|||||+
T Consensus 453 ----~s~l~~i--y~~~~v~e~h~H~Y~Vns~~~~~l~~~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~ 526 (550)
T 1vco_A 453 ----GTLLHRL--YGKEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFK 526 (550)
T ss_dssp ----TSHHHHH--HCCSEEEEEEEESEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGG
T ss_pred ----CchhhHh--cCCceeeeeccceEEEchHHhhccccCCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEeCCccC
Confidence 2333321 11 23335677777773 455 789999999884 699999976 677 99999994
Q ss_pred -----CHHHHHHHHHHH
Q 025645 199 -----TKDILYNLIDRL 210 (250)
Q Consensus 199 -----~~~~~~~~~~~~ 210 (250)
+..+|++|++..
T Consensus 527 ~~p~~g~~LF~~Fv~aa 543 (550)
T 1vco_A 527 SRPMRPSPPFVGFVEAA 543 (550)
T ss_dssp CBTTBCCHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHH
Confidence 457899998765
No 35
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.91 E-value=6.2e-25 Score=199.90 Aligned_cols=190 Identities=16% Similarity=0.189 Sum_probs=126.3
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC--CCCCCCCcCEEEEcCCCCCCCCCChhHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP--DFNDLHKYDGFVISGSPYDAYGNDNWILKL 84 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~ 84 (250)
.+||+...-.. +.++|.++...+.+.....|.++.++++...+.. ..+.+.++||||+|||++++. ....
T Consensus 290 v~i~~vGkyv~---l~D~y~Si~~aL~~~G~~~~~~V~i~~~d~e~i~~~~~~~l~~~DGIilsGGpg~~~-----~~g~ 361 (545)
T 1s1m_A 290 VTIGMVGKYIE---LPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRG-----VEGM 361 (545)
T ss_dssp EEEEEEESSCS---SGGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTT-----HHHH
T ss_pred EEeCCcCCeEE---EEEHHHHHHHHHHHhCcccCCeEEEccCCHHHhhhhhhhhhhcCCEEEECCCCCCcc-----chhh
Confidence 35676542221 2345655555555444444556677776543211 113467899999999987753 3567
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHcCceEEecCCC---------------------------------------cee
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRALGGKVGKAYTG---------------------------------------WDI 125 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~gg~v~~~~~~---------------------------------------~~~ 125 (250)
.++++++.+.++|+||||+|||+|+.++||++.+++.. ...
T Consensus 362 ~~~i~~a~~~~~PiLGIClG~Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrl 441 (545)
T 1s1m_A 362 ITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRL 441 (545)
T ss_dssp HHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEE
T ss_pred HHHHHHHHHCCCcEEEECChHHHHHHHhCCceecCCCCcccccCCCCCCceEEeecccccccccccccccccccCccccc
Confidence 78899999889999999999999999999987643211 012
Q ss_pred eEEEEEEecCCCCCCcccccCCCC-CceEEEeeeccccc-----cc-CCccEEEEEcCCC-ceEEEEECC-cEE-EEecC
Q 025645 126 GLRRVRIVNDLAPCSFLEDLGEIP-GSLSIMECHRDEVW-----KV-PIGAEVIGFSDKT-GVEMFTIGD-HIL-GIQGH 195 (250)
Q Consensus 126 g~~~i~~~~~~~~~~l~~~~~~l~-~~~~~~~~H~~~v~-----~l-p~~~~~la~s~~~-~v~~~~~~~-~~~-g~QfH 195 (250)
|++++.+.+ .+++... +. ..+...+.|.+.|. .+ +++++++|.+.++ .++++++++ +++ |+|||
T Consensus 442 G~~~v~l~~----~s~l~~i--yg~~~v~e~h~Hry~VNs~~~~~l~~~gl~v~a~s~dg~~VEaie~~~~p~flGVQFH 515 (545)
T 1s1m_A 442 GAQQCQLVD----DSLVRQL--YNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFH 515 (545)
T ss_dssp EEEEEEECT----TCHHHHH--TTSSEEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSC
T ss_pred cceeeEecc----CCHHHHh--cCCceEEEecCcceEEChHHhhhcccCCeEEEEECCCCCceEEEEeCCCCEEEEEeCC
Confidence 455666643 2222221 22 23345677887773 34 4899999999998 699999976 555 99999
Q ss_pred CCC------CHHHHHHHHHHH
Q 025645 196 PEY------TKDILYNLIDRL 210 (250)
Q Consensus 196 PE~------~~~~~~~~~~~~ 210 (250)
||+ +..+|++|++..
T Consensus 516 PE~~~~p~~g~~LF~~Fv~aa 536 (545)
T 1s1m_A 516 PEFTSTPRDGHPLFAGFVKAA 536 (545)
T ss_dssp GGGTCCTTTCCHHHHHHHHHH
T ss_pred CCCCCCCCChHHHHHHHHHHH
Confidence 994 357899998765
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.29 E-value=7.1e-11 Score=117.04 Aligned_cols=180 Identities=17% Similarity=0.268 Sum_probs=112.0
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCC--CCCCCC-hhH-
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPY--DAYGND-NWI- 81 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~--~~~~~~-~~~- 81 (250)
++||+||+..-... .....++|+.+|.++..+++.+ ....+..++++|+||+|||.. +..... .|.
T Consensus 1047 ~pkVaIi~~~G~N~---------~~~~~~A~~~aG~~~~~v~~~d-l~~~~~~l~~~d~lvlPGGfSygD~l~~g~~~a~ 1116 (1303)
T 3ugj_A 1047 RPKVAVLREQGVNS---------HVEMAAAFHRAGFDAIDVHMSD-LLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAK 1116 (1303)
T ss_dssp CCEEEEEECTTCCC---------HHHHHHHHHHTTCEEEEEEHHH-HHTTSCCGGGCSEEEECCSCGGGGTTSTTHHHHH
T ss_pred CCEEEEEecCCcCC---------HHHHHHHHHHhCCceEEEeecc-cccCcccHhhCCEEEECCCCcchhhhccchhHHH
Confidence 46899998532221 1224678899999988775421 011234578999999999953 211111 121
Q ss_pred -----HHHHHHHHHHH-hcCCcEEEEehHHHHHHHH---cCce-----EEecCCC-ceeeEEEEEEecCCCCCCcccccC
Q 025645 82 -----LKLCFMLQTLD-AMQKKVLGICFGHQVLCRA---LGGK-----VGKAYTG-WDIGLRRVRIVNDLAPCSFLEDLG 146 (250)
Q Consensus 82 -----~~~~~~i~~~~-~~~~PilGIC~G~Qlla~a---~gg~-----v~~~~~~-~~~g~~~i~~~~~~~~~~l~~~~~ 146 (250)
..+.+.++++. +.++|+||||.|||+|+.+ +.|. +.++... ++..|..+++.. ..+++++++
T Consensus 1117 ~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~~~~p~l~~N~s~~f~~r~~~~~v~~--~~s~~~~~~- 1193 (1303)
T 3ugj_A 1117 SILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQ--SPSLLLQGM- 1193 (1303)
T ss_dssp HHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEEEEEECC--CSCGGGTTC-
T ss_pred HHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCCCCCCeEecCCCCCeEEeCeEEEECC--CCChhhhcc-
Confidence 34555666644 5799999999999999986 2333 5665543 456677777764 367788873
Q ss_pred CCCCceEEEeeecccccccC----------CccEEEEEc-------------CCC---ceEEEEEC-CcEEEEecCCCCC
Q 025645 147 EIPGSLSIMECHRDEVWKVP----------IGAEVIGFS-------------DKT---GVEMFTIG-DHILGIQGHPEYT 199 (250)
Q Consensus 147 ~l~~~~~~~~~H~~~v~~lp----------~~~~~la~s-------------~~~---~v~~~~~~-~~~~g~QfHPE~~ 199 (250)
-...+.++..|++.=...+ .+..++-+. .++ .++++... ++++|...|||..
T Consensus 1194 -~g~~~~i~vaHgEG~~~~~~~~~l~~l~~~~~v~~rY~d~~g~~~~~yp~NPNGS~~~IaGi~s~~Grvlg~MpHPEr~ 1272 (1303)
T 3ugj_A 1194 -VGSQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVTIMMPHPERV 1272 (1303)
T ss_dssp -TTCEEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCSTTTSSSCCGGGEEEEECTTSSEEEESSBGGGS
T ss_pred -CCCEEeeeeEeCCCCeeeCCHHHHHHHHhCCcEEEEEeCCCCCcccCCCCCCCCChhhceEeECCCCCEEEEcCChHHc
Confidence 1356778888876521111 223333332 222 37788875 4899999999953
No 37
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.87 E-value=1.7e-10 Score=93.18 Aligned_cols=103 Identities=13% Similarity=0.009 Sum_probs=68.2
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-CCCCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-FNDLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
...||+++.+....+. +..|...+.++|++.|+++..+++...+.++ .+.+.++|+|++|||........-...+
T Consensus 26 ~~~~i~~Ip~As~~~~----~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~l~~~L~~~g 101 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEE----VTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELKRTG 101 (206)
T ss_dssp TTCEEEEECGGGGGCS----CCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCC----HHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHHCC
Confidence 3578999985543211 2235677889999999987776543311000 0346789999999985432111111234
Q ss_pred HHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 84 LCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
+.+.|+++.+.++|++|||.|+|+++..
T Consensus 102 l~~~l~~~~~~G~p~~G~sAGa~~l~~~ 129 (206)
T 3l4e_A 102 ADKLILEEIAAGKLYIGESAGAVITSPN 129 (206)
T ss_dssp HHHHHHHHHHTTCEEEEETHHHHTTSSB
T ss_pred hHHHHHHHHHcCCeEEEECHHHHHhccc
Confidence 6788888888899999999999999753
No 38
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.79 E-value=3.2e-10 Score=93.09 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=65.6
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-CCCCCcCEEEEcCCCCCCCCCChhHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-NDLHKYDGFVISGSPYDAYGNDNWILKL 84 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~l~~~dglIi~Gg~~~~~~~~~~~~~~ 84 (250)
..||+++.+...... +..|...+.++|++.|+++..++.. .+. +.+.++|+|++|||........-....+
T Consensus 31 ~~~i~iI~~a~~~~~----~~~~~~~~~~al~~lG~~~~~v~~~----~d~~~~l~~ad~I~lpGG~~~~~~~~l~~~gl 102 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQT----WDEYTDKTAEVLAPLGVNVTGIHRV----ADPLAAIEKAEIIIVGGGNTFQLLKESRERGL 102 (229)
T ss_dssp CCEEEEECTTCCSSC----HHHHHHHHHHHHGGGTCEEEETTSS----SCHHHHHHHCSEEEECCSCHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCC----HHHHHHHHHHHHHHCCCEEEEEecc----ccHHHHHhcCCEEEECCCcHHHHHHHHHHCCh
Confidence 468999987642111 1135567788999999876555322 122 4577899999999854321110001235
Q ss_pred HHHHHHHHhcCCcEEEEehHHHHHHHHc
Q 025645 85 CFMLQTLDAMQKKVLGICFGHQVLCRAL 112 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G~Qlla~a~ 112 (250)
.+.|+++.+.++|++|+|.|+|+++...
T Consensus 103 ~~~l~~~~~~G~p~~G~sAG~~~l~~~~ 130 (229)
T 1fy2_A 103 LAPMADRVKRGALYIGWSAGANLACPTI 130 (229)
T ss_dssp HHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred HHHHHHHHHcCCEEEEECHHHHhhcccc
Confidence 6778888888999999999999998753
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=98.78 E-value=1.3e-08 Score=81.25 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=65.9
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-C----------CC--CC--CCCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-F----------PD--FN--DLHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~----------~~--~~--~l~~~dglIi~Gg 70 (250)
.+||+||..+..... . + ....+.|+.+|.++.++....+. . ++ .+ ...++|+||||||
T Consensus 23 ~~kV~ill~~g~~~~-e-----~-~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG 95 (193)
T 1oi4_A 23 SKKIAVLITDEFEDS-E-----F-TSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG 95 (193)
T ss_dssp CCEEEEECCTTBCTH-H-----H-HHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB
T ss_pred CCEEEEEECCCCCHH-H-----H-HHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCC
Confidence 468999986533321 0 1 12456788889988887654332 0 00 01 2357899999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 71 PYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
.. . ........+.++++++.+.++||.|||.|.++|+.+
T Consensus 96 ~~-~-~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 96 HS-P-DYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp TH-H-HHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred cC-H-HHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 43 2 112223678899999999999999999999999987
No 40
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=98.59 E-value=7e-08 Score=79.16 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=67.4
Q ss_pred CCccccceEEEEecC----CCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCC-----------------------
Q 025645 1 MDLMEEKRYALFLAA----KDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDF----------------------- 53 (250)
Q Consensus 1 m~~~~~~riail~~~----~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~----------------------- 53 (250)
|+-+..+||+||..+ ++..... + ......|+++|.++.++....+..
T Consensus 1 ~~~~~m~kv~ill~~~~~~~g~~~~E-----~-~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~ 74 (232)
T 1vhq_A 1 MSLITMKKIGVILSGCGVYDGSEIHE-----A-VLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAAR 74 (232)
T ss_dssp -----CCEEEEECCSBSTTTSBCHHH-----H-HHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTT
T ss_pred CccccCCeEEEEEccCCCCCCeeHHH-----H-HHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHH
Confidence 443444689999873 2222111 1 113467888899998887543221
Q ss_pred ------CCCCC--CCCcCEEEEcCCCCCC--CCCCh-------hHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcC
Q 025645 54 ------PDFND--LHKYDGFVISGSPYDA--YGNDN-------WILKLCFMLQTLDAMQKKVLGICFGHQVLCRALG 113 (250)
Q Consensus 54 ------~~~~~--l~~~dglIi~Gg~~~~--~~~~~-------~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~g 113 (250)
...++ .+++|+||||||.... ..+.+ ....+.++++++.+.+++|.+||.|.++|+.++.
T Consensus 75 ~~~~~~~~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~ 151 (232)
T 1vhq_A 75 ITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD 151 (232)
T ss_dssp TTTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred hhhcCCCCHHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhc
Confidence 01112 3469999999996431 11111 1367889999999999999999999999999854
No 41
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=98.58 E-value=3.3e-08 Score=78.98 Aligned_cols=99 Identities=21% Similarity=0.248 Sum_probs=67.5
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-C---------CC--CCCC---CCcCEEEEcC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-F---------PD--FNDL---HKYDGFVISG 69 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~---------~~--~~~l---~~~dglIi~G 69 (250)
+++||+||..+..... . + ....+.|+.+|.++.++....+. . ++ .+++ .++|+|||||
T Consensus 2 m~~~v~ill~~g~~~~-e-----~-~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpG 74 (197)
T 2rk3_A 2 ASKRALVILAKGAEEM-E-----T-VIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPG 74 (197)
T ss_dssp CCCEEEEEECTTCCHH-H-----H-HHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECC
T ss_pred CCCEEEEEECCCCcHH-H-----H-HHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECC
Confidence 4578999987544331 1 1 12356788889988877654321 0 11 0123 6799999999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 70 SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 70 g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
|.... ........+.++++++.+.+++|.+||.|.++|+.+
T Consensus 75 G~~~~-~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 75 GNLGA-QNLSESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp CHHHH-HHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred CchhH-HHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 96322 112334678899999999999999999999999986
No 42
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=98.57 E-value=7.3e-08 Score=74.88 Aligned_cols=97 Identities=20% Similarity=0.247 Sum_probs=65.4
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----------CCCC--CCcCEEEEcCCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----------FNDL--HKYDGFVISGSPY 72 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----------~~~l--~~~dglIi~Gg~~ 72 (250)
++||+||..+..... . + ....+.|+.+|.++.++....+.... .+++ .++|+||+|||..
T Consensus 2 ~~ki~il~~~g~~~~-e-----~-~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~ 74 (168)
T 3l18_A 2 SMKVLFLSADGFEDL-E-----L-IYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKA 74 (168)
T ss_dssp CCEEEEECCTTBCHH-H-----H-HHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSH
T ss_pred CcEEEEEeCCCccHH-H-----H-HHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcC
Confidence 478999987654331 1 1 12346788889888877643211100 1122 3699999999963
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 73 DAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 73 ~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
. +.......+.++++++.++++||.+||.|.++|+.+
T Consensus 75 ~--~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 75 P--EIVRLNEKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp H--HHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred H--HHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 2 111223678899999999999999999999999986
No 43
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=98.57 E-value=4.5e-08 Score=77.65 Aligned_cols=101 Identities=18% Similarity=0.265 Sum_probs=65.9
Q ss_pred ccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCC--------------CC--CCCC--CCcCE
Q 025645 3 LMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDF--------------PD--FNDL--HKYDG 64 (250)
Q Consensus 3 ~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--------------~~--~~~l--~~~dg 64 (250)
+|..+||+||..+..... . + ......|+.+|.++.++....+.. ++ .+++ .++|+
T Consensus 6 ~~~~~~v~il~~~g~~~~-e-----~-~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~ 78 (190)
T 2vrn_A 6 DLTGKKIAILAADGVEEI-E-----L-TSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDG 78 (190)
T ss_dssp CCTTCEEEEECCTTCBHH-H-----H-HHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSE
T ss_pred CCCCCEEEEEeCCCCCHH-H-----H-HHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCE
Confidence 456689999976543321 1 1 123467888888887765432111 11 1122 47999
Q ss_pred EEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 65 FVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 65 lIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
||||||..... +......+.++++++.+.++||.+||.|.++|+.+
T Consensus 79 livpGG~~~~~-~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 79 LLLPGGTVNPD-KLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp EEECCCTHHHH-HHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred EEECCCchhHH-HHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 99999963221 11224678899999999999999999999999986
No 44
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=98.49 E-value=1.6e-07 Score=73.81 Aligned_cols=77 Identities=18% Similarity=0.048 Sum_probs=55.7
Q ss_pred HHHHhcCCCceEEEEeecCCC---------C----CCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEE
Q 025645 33 VAAFGEEGERWDLFRVVEGDF---------P----DFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVL 99 (250)
Q Consensus 33 ~~~l~~~g~~~~~~~~~~~~~---------~----~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pil 99 (250)
.+.|+++|+++.++....+.. + +..+..+||+||||||++.. .....+.+.++++++.+.++||.
T Consensus 28 ~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~--~l~~~~~~~~~l~~~~~~~k~ia 105 (177)
T 4hcj_A 28 KKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCI--TLWDDWRTQGLAKLFLDNQKIVA 105 (177)
T ss_dssp HHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGG--GGTTCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHH--HHhhCHHHHHHHHHHHHhCCEEE
Confidence 467889999988776433211 1 11124579999999997531 22223578889999999999999
Q ss_pred EEehHHHHHHHH
Q 025645 100 GICFGHQVLCRA 111 (250)
Q Consensus 100 GIC~G~Qlla~a 111 (250)
+||.|.++|+.+
T Consensus 106 aIC~g~~~La~a 117 (177)
T 4hcj_A 106 GIGSGVVIMANA 117 (177)
T ss_dssp EETTHHHHHHHT
T ss_pred EecccHHHHHHC
Confidence 999999999886
No 45
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=98.47 E-value=9.5e-07 Score=82.05 Aligned_cols=102 Identities=10% Similarity=0.027 Sum_probs=71.3
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC----CCCCCCCCCcCEEEEcCCCCCC-----
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD----FPDFNDLHKYDGFVISGSPYDA----- 74 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----~~~~~~l~~~dglIi~Gg~~~~----- 74 (250)
..++|||||..+.+.+...- ....+.|+++|+.+.++....+. .-+......||+||||||....
T Consensus 535 l~grKVaILvadG~fE~~El------~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~ 608 (688)
T 3ej6_A 535 IATLRVGVLSTTKGGSLDKA------KALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKG 608 (688)
T ss_dssp CTTCEEEEECCSSSSHHHHH------HHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTT
T ss_pred ccCCEEEEEccCCCccHHHH------HHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCccccccccc
Confidence 45689999987542332221 12468899999999998764331 0111223469999999996542
Q ss_pred -CCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 75 -YGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 75 -~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
.+.........++++.+.+++|||-+||-|-++|..+
T Consensus 609 ~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 609 AMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp TCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred chhhhccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 1233333578899999999999999999999999876
No 46
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=98.47 E-value=5.6e-07 Score=74.24 Aligned_cols=102 Identities=17% Similarity=0.219 Sum_probs=66.2
Q ss_pred ccceEEEEecC----CCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC--------------------------
Q 025645 5 EEKRYALFLAA----KDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP-------------------------- 54 (250)
Q Consensus 5 ~~~riail~~~----~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-------------------------- 54 (250)
+.+||+|+..+ ++.+...- ......|+++|.++.++.+..+..+
T Consensus 22 M~kkV~ill~~~~~~dG~e~~E~------~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~ 95 (242)
T 3l3b_A 22 MALNSAVILAGCGHMDGSEIREA------VLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARG 95 (242)
T ss_dssp --CEEEEECCCSSTTTSCCHHHH------HHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTT
T ss_pred ccCEEEEEEecCCCCCCeeHHHH------HHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccc
Confidence 34789999863 22222111 1134678889999988765432100
Q ss_pred ---CCCC--CCCcCEEEEcCCCCCC-----C-----CCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHc
Q 025645 55 ---DFND--LHKYDGFVISGSPYDA-----Y-----GNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRAL 112 (250)
Q Consensus 55 ---~~~~--l~~~dglIi~Gg~~~~-----~-----~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~ 112 (250)
..++ ..+||+||||||.... + +.......+.++++++.+.++||.+||.|..+|+.+.
T Consensus 96 ~~~~l~dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 96 SVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp CEEEGGGCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred cCCChHHCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 0112 2479999999996421 0 1112236788999999999999999999999999885
No 47
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=98.42 E-value=4.9e-07 Score=71.67 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=66.0
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeec-CCCC---------C--CCC--CCCcCEEEEcCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVE-GDFP---------D--FND--LHKYDGFVISGS 70 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~~---------~--~~~--l~~~dglIi~Gg 70 (250)
+++||+|+..+...+. . + ......|+++|.++.++.... .... + .++ ..++|+||||||
T Consensus 4 m~kkv~ill~~g~~~~-e-----~-~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG 76 (190)
T 4e08_A 4 MSKSALVILAPGAEEM-E-----F-IIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGG 76 (190)
T ss_dssp CCCEEEEEECTTCCHH-H-----H-HHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCC
T ss_pred CCcEEEEEECCCchHH-H-----H-HHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCC
Confidence 3478999987544321 1 1 123468888999988877544 2110 0 111 246899999998
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 71 PYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
.... ........+.++++++.+.+++|.+||-|.++|+.+
T Consensus 77 ~~~~-~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 77 LGGS-NAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp HHHH-HHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred ChHH-HHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 4221 111223567889999999999999999999999985
No 48
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=98.39 E-value=2.1e-06 Score=69.33 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=64.8
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHh--------cCCCceEEEEeecCCC---------CC--CCCC--CCc
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFG--------EEGERWDLFRVVEGDF---------PD--FNDL--HKY 62 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~--------~~g~~~~~~~~~~~~~---------~~--~~~l--~~~ 62 (250)
|+.+||+|+..+..... ++.. ....|+ +.+.++.++....+.. ++ .+++ .++
T Consensus 3 m~m~~v~ill~~g~~~~------e~~~-~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~ 75 (212)
T 3efe_A 3 MQTKKAFLYVFNTMSDW------EYGY-LIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESK 75 (212)
T ss_dssp --CCCEEEEECTTCCTT------TTHH-HHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTT
T ss_pred CcccEEEEEECCCccHH------HHHH-HHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCC
Confidence 44578999986644321 1111 234555 5678888776543211 11 1222 379
Q ss_pred CEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 63 DGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 63 dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
|+||||||.... ......+.++++++.+.+++|.+||-|..+|+.+
T Consensus 76 D~livpGG~~~~---~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 76 DLLILPGGTTWS---EEIHQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp CEEEECCCSCTT---SGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred CEEEECCCCccc---cccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 999999996532 2334678899999999999999999999999986
No 49
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=98.39 E-value=1.4e-07 Score=75.91 Aligned_cols=97 Identities=16% Similarity=0.099 Sum_probs=65.9
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC---C---------CC--CC--CCCCcCEEEEcCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD---F---------PD--FN--DLHKYDGFVISGS 70 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~---~---------~~--~~--~l~~~dglIi~Gg 70 (250)
+||+||..+..... . + ......|+.+|.++.++....+. . ++ .+ ...++|+||||||
T Consensus 3 ~kV~ill~~g~~~~-e-----~-~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG 75 (205)
T 2ab0_A 3 ASALVCLAPGSEET-E-----A-VTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGG 75 (205)
T ss_dssp CEEEEEECTTCCHH-H-----H-HHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCC
T ss_pred cEEEEEEcCCCcHH-H-----H-HHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCC
Confidence 68999987654321 1 1 12346788889998887654331 1 11 01 1257999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHH-HHHHHH
Q 025645 71 PYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGH-QVLCRA 111 (250)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~-Qlla~a 111 (250)
.... .+......+.++++++.+.++||.+||.|. ++|+.+
T Consensus 76 ~~~~-~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 76 IKGA-ECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHHH-HHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred cccH-HHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 5432 112334678899999999999999999999 999865
No 50
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=98.30 E-value=2.8e-06 Score=68.33 Aligned_cols=95 Identities=14% Similarity=0.103 Sum_probs=63.0
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcC-CCceEEEEeecC-----CC---CC--CCCC-CCcCEEEEcCCCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEE-GERWDLFRVVEG-----DF---PD--FNDL-HKYDGFVISGSPYD 73 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~-----~~---~~--~~~l-~~~dglIi~Gg~~~ 73 (250)
.+||+||..+..... +... ....|++. +.++.++....+ .. ++ .+++ .++|.||||||...
T Consensus 3 m~kV~ill~~g~~~~------E~~~-~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpGG~~~ 75 (206)
T 3f5d_A 3 LKKALFLILDQYADW------EGVY-LASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGDSW 75 (206)
T ss_dssp CEEEEEECCSSBCTT------TSHH-HHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBSCC
T ss_pred ccEEEEEEcCCCcHH------HHHH-HHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcCCCCh
Confidence 468999986543321 1111 34566666 777776654321 00 00 1122 37999999999743
Q ss_pred CCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 74 AYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 74 ~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
.. ....+.++++++.+.+++|.+||-|..+|+.+
T Consensus 76 ~~----~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 76 SN----DNKKLLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp CC----CCHHHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred hh----cCHHHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 22 23678899999999999999999999999986
No 51
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.28 E-value=1.2e-06 Score=68.51 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=41.8
Q ss_pred CCcCEEEEcCC--CCCCC--CCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 60 HKYDGFVISGS--PYDAY--GNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 60 ~~~dglIi~Gg--~~~~~--~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
.++|+||+||| ...+. .+.+....+.++++++.+.+++|.+||.|.++|+.+
T Consensus 65 ~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 65 DEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred ccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 67899999999 42221 122356778999999999999999999999999986
No 52
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=98.27 E-value=1.8e-06 Score=69.62 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=41.5
Q ss_pred CCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 58 DLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 58 ~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
++.++|.||||||...........+.+.++++++.+.+++|.+||-|..+|+.+
T Consensus 71 ~~~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 71 SFDFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp GCSCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred ccCCCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 356799999999964211100113578889999999999999999999999987
No 53
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=98.26 E-value=2.5e-06 Score=68.37 Aligned_cols=49 Identities=24% Similarity=0.212 Sum_probs=41.1
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
..++|.||||||...... . +.+.++++++.+.+++|.+||-|..+|+.+
T Consensus 69 ~~~~D~livpGG~~~~~~--~--~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLK--Y--PELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp GTTCSEEEEECCTTCCSC--C--TTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred CCCCCEEEEeCCCchhhc--c--HHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 467999999999754322 2 577889999999999999999999999987
No 54
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=98.25 E-value=1.1e-06 Score=71.37 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=56.1
Q ss_pred HHHHHhcCCCceEEEEeecCCCCC---------------------C---CC--CCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 32 FVAAFGEEGERWDLFRVVEGDFPD---------------------F---ND--LHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~~~---------------------~---~~--l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
....|+.+|.++.++....+.... + ++ ..++|+||||||..... +......+.
T Consensus 34 p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~-~l~~~~~l~ 112 (224)
T 1u9c_A 34 PYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMF-DFPDNETLQ 112 (224)
T ss_dssp HHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHH-HSTTCHHHH
T ss_pred HHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHH-HhhcCHHHH
Confidence 346788889998887654322210 0 11 24799999999975321 112236788
Q ss_pred HHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 86 FMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
++++++.+.++||.+||.|.++|+.+
T Consensus 113 ~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 113 YVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 99999999999999999999999875
No 55
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=98.24 E-value=5.4e-07 Score=72.57 Aligned_cols=103 Identities=16% Similarity=0.156 Sum_probs=64.8
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeec-CCC---------CC--CCCC--CCcCEEE
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVE-GDF---------PD--FNDL--HKYDGFV 66 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~---------~~--~~~l--~~~dglI 66 (250)
|+..+.+||+||..+..... . + ......|+.+|.++.++.... ... ++ .+++ .++|+||
T Consensus 4 ~~~~m~~~v~ill~~g~~~~-e-----~-~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~li 76 (208)
T 3ot1_A 4 MEQGMSKRILVPVAHGSEEM-E-----T-VIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALA 76 (208)
T ss_dssp -----CCEEEEEECTTCCHH-H-----H-HHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEE
T ss_pred cccccCCeEEEEECCCCcHH-H-----H-HHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEE
Confidence 44445579999987644321 1 1 123467888899888876542 111 10 1122 4799999
Q ss_pred EcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHH-HHHHHH
Q 025645 67 ISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGH-QVLCRA 111 (250)
Q Consensus 67 i~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~-Qlla~a 111 (250)
||||..... .......+.++++++.+.+++|.+||-|. .+|+.+
T Consensus 77 vpGG~~~~~-~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 77 LPGGVGGAQ-AFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp ECCCHHHHH-HHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred ECCCchHHH-HHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 999953211 11113578889999999999999999998 888764
No 56
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=98.23 E-value=1.3e-06 Score=72.12 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=40.9
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
.+||+|+||||.... .+......+.++++++.+.++||.+||.|..+|+.+
T Consensus 97 ~~yD~l~vpGG~~~~-~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 97 SDYKVFFASAGHGAL-FDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGCSEEEECCSTTHH-HHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCCEEEEcCCCchh-hhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 468999999997532 122234678899999999999999999999999876
No 57
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=98.22 E-value=4.5e-06 Score=77.71 Aligned_cols=103 Identities=13% Similarity=0.055 Sum_probs=71.2
Q ss_pred ccccceEEEEecC-CCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC----CCCCCCcCEEEEcCCCCC----
Q 025645 3 LMEEKRYALFLAA-KDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD----FNDLHKYDGFVISGSPYD---- 73 (250)
Q Consensus 3 ~~~~~riail~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~----~~~l~~~dglIi~Gg~~~---- 73 (250)
++..+||+||... .+.+..+. ....+.|+++|+.+.++....++..+ ..+...||+||||||..+
T Consensus 526 ~l~g~kVaIL~a~~dGfe~~E~------~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~ 599 (688)
T 2iuf_A 526 KLDGLKVGLLASVNKPASIAQG------AKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGA 599 (688)
T ss_dssp CCTTCEEEEECCTTCHHHHHHH------HHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCT
T ss_pred CCCCCEEEEEecCCCCCcHHHH------HHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccc
Confidence 3556899999762 23332221 23568999999999998765433221 122357999999999533
Q ss_pred -----------CCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 74 -----------AYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 74 -----------~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
..+...-.....++++.+.+.+|||-+||.|-++|..+
T Consensus 600 ~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 600 DSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp TTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred cccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 01222224578899999999999999999999999875
No 58
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=98.18 E-value=2.3e-06 Score=80.06 Aligned_cols=99 Identities=9% Similarity=-0.045 Sum_probs=67.9
Q ss_pred ccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCC---------C----CCCCCCCcCEEEEcC
Q 025645 3 LMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDF---------P----DFNDLHKYDGFVISG 69 (250)
Q Consensus 3 ~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~---------~----~~~~l~~~dglIi~G 69 (250)
++.++||+||..+...+ .. + ....+.|+++|+.+.++....+.. + +......||+|||||
T Consensus 597 ti~grKVaILlaDGfEe-~E-----l-~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPG 669 (753)
T 3ttv_A 597 DVKGRVVAILLNDEVRS-AD-----L-LAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPC 669 (753)
T ss_dssp CCTTCEEEEECCTTCCH-HH-----H-HHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECC
T ss_pred CCCCCEEEEEecCCCCH-HH-----H-HHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECC
Confidence 34568999998654332 21 1 124578999999998876543211 0 111123589999999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 70 SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 70 g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
| +. +.......+.++++++.++++||-+||-|-++|+.+
T Consensus 670 G-g~--~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 670 G-NI--ADIADNGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp S-CG--GGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred C-Ch--HHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 9 21 222223678899999999999999999999999876
No 59
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=98.15 E-value=2.4e-06 Score=70.59 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=40.9
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
++||+|+||||.+.. .+......+.++++++.+.++||.+||.|..+|+.+
T Consensus 104 ~~yD~l~ipGG~g~~-~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 104 HDYGLMFVCGGHGAL-YDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GGCSEEEECCSTTHH-HHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hhCCEEEEeCCCchh-hhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 468999999997431 122334678899999999999999999999999775
No 60
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=98.14 E-value=1.4e-06 Score=71.76 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=40.8
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
++||+||||||..... +......+.++++++.+.++||.+||.|..+|+.+
T Consensus 97 ~~~D~livpGG~~~~~-~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLF-DYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GGEEEEEECCSTTHHH-HGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCcEEEECCCCCchh-hcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 4799999999965321 12223678899999999999999999999998876
No 61
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=98.13 E-value=5.6e-06 Score=67.72 Aligned_cols=98 Identities=14% Similarity=0.046 Sum_probs=64.6
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhc-CCCceEEEEeecCCC---------C--CCCCCCCcCEEEEcCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE-EGERWDLFRVVEGDF---------P--DFNDLHKYDGFVISGSPY 72 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~---------~--~~~~l~~~dglIi~Gg~~ 72 (250)
+++||+||..+..... . +.. ..+.|+. .+.++.++....+.. + ..+++.++|.||||||++
T Consensus 4 m~~~V~ill~~gf~~~-e-----~~~-p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~~~~D~livpGG~g 76 (231)
T 3noq_A 4 MAVQIGFLLFPEVQQL-D-----LTG-PHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCPPLDVICIPGGTG 76 (231)
T ss_dssp CCEEEEEECCTTCCHH-H-----HHH-HHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTCCCCSEEEECCSTT
T ss_pred CcEEEEEEEeCCCcHH-H-----HHH-HHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHCCcCCEEEECCCCC
Confidence 3479999987654432 1 111 3456766 677777665332110 0 122356799999999964
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 73 DAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 73 ~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
.. .......+.++++++.+.+++|.+||-|..+|+.+
T Consensus 77 ~~--~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 77 VG--ALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp HH--HHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred hh--hhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 21 11113578889999999999999999999999986
No 62
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=98.08 E-value=3.6e-06 Score=66.52 Aligned_cols=95 Identities=23% Similarity=0.219 Sum_probs=61.5
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhc-CCCceEEEEeecCCC---------CC--CCCC--CCcCEEEEcCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE-EGERWDLFRVVEGDF---------PD--FNDL--HKYDGFVISGSPY 72 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~---------~~--~~~l--~~~dglIi~Gg~~ 72 (250)
+||+|+..+..... ++.. ....|+. .|.++.++....+.. ++ .++. .++|+||||||..
T Consensus 2 ~~i~ill~~g~~~~------e~~~-~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~ 74 (188)
T 2fex_A 2 TRIAIALAQDFADW------EPAL-LAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLS 74 (188)
T ss_dssp CEEEEECCTTBCTT------SSHH-HHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSH
T ss_pred cEEEEEeCCCchHH------HHHH-HHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCc
Confidence 58999986533221 1112 3456666 888888776543211 11 1122 3799999999963
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 73 DAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 73 ~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
..... ...+.++++++.+.+++|.+||.|.++|+.+
T Consensus 75 ~~~~~---~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 75 WEKGT---AADLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp HHHTC---CCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred ccccc---cHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 21111 2346778899999999999999999999986
No 63
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=98.03 E-value=5.6e-06 Score=77.82 Aligned_cols=102 Identities=12% Similarity=0.068 Sum_probs=67.9
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCC--------CCC---CC--CCCcCEEEEcCC
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDF--------PDF---ND--LHKYDGFVISGS 70 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--------~~~---~~--l~~~dglIi~Gg 70 (250)
|..+||+||..+..... . + ......|+.+|.++.++....+.. ..+ ++ ...+|+||||||
T Consensus 532 m~~rkVaILl~dGfe~~-E-----l-~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG 604 (715)
T 1sy7_A 532 IKSRRVAIIIADGYDNV-A-----Y-DAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGG 604 (715)
T ss_dssp CTTCEEEEECCTTBCHH-H-----H-HHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCC
T ss_pred CCCCEEEEEEcCCCCHH-H-----H-HHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCC
Confidence 56679999987543321 1 1 124567888899988876543211 011 11 246899999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcC
Q 025645 71 PYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALG 113 (250)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~g 113 (250)
.... ........+.++++++.+.+++|.+||-|..+|+.++|
T Consensus 605 ~~~~-~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 605 AKAA-ETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp HHHH-HHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred cccH-hhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence 4221 11111256888999999999999999999999999864
No 64
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=97.99 E-value=1.2e-05 Score=70.06 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=65.0
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-C---------CC---CCCC--CCcCEEEEcC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-F---------PD---FNDL--HKYDGFVISG 69 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~---------~~---~~~l--~~~dglIi~G 69 (250)
+.+||+||..+..... . + ......|+.+|.++.++....+. . .. .+++ .++|+|||||
T Consensus 9 ~mkkV~ILl~dgf~~~-E-----l-~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPG 81 (365)
T 3fse_A 9 GKKKVAILIEQAVEDT-E-----F-IIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPG 81 (365)
T ss_dssp --CEEEEECCTTBCHH-H-----H-HHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECC
T ss_pred CceEEEEEECCCCcHH-H-----H-HHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEEC
Confidence 3468999986644321 1 1 12356788889988877654332 1 10 1122 2689999999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 70 SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 70 g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
|... ........+.++++.+.+.+++|.+||-|..+|+.+
T Consensus 82 G~g~--~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 82 GMAP--DKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp BTHH--HHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred Ccch--hhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 9732 111123578899999999999999999999999986
No 65
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=97.98 E-value=6.6e-06 Score=66.33 Aligned_cols=98 Identities=14% Similarity=0.072 Sum_probs=61.7
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCC--CceEEEEeecCCC-----------CCCCCCCCcCEEEEcCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEG--ERWDLFRVVEGDF-----------PDFNDLHKYDGFVISGSP 71 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~-----------~~~~~l~~~dglIi~Gg~ 71 (250)
.++||+||..+..... . + ....+.|+.++ .++.++....+.. ...++...+|.||||||.
T Consensus 3 ~~~~V~ill~~g~~~~-e-----~-~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~~~~D~livpGG~ 75 (211)
T 3mgk_A 3 LSYRIDVLLFNKFETL-D-----V-FGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPGGS 75 (211)
T ss_dssp -CEEEEEECCTTCCHH-H-----H-HHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCSSSEEEEEECCST
T ss_pred CceEEEEEEeCCcchh-H-----H-HHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhCCCCCEEEECCCc
Confidence 3579999987654432 1 1 12346777663 5555543221100 012234468999999996
Q ss_pred CCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 72 YDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
... .......+.++++++.+.+++|.+||-|..+|+.+
T Consensus 76 ~~~--~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 76 GTR--EKVNDDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp HHH--HHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred chh--hhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 421 11112578889999999999999999999999986
No 66
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=97.95 E-value=9.4e-06 Score=71.59 Aligned_cols=97 Identities=22% Similarity=0.264 Sum_probs=64.9
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC------------------------C-C--CCC-
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD------------------------F-P--DFN- 57 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~------------------------~-~--~~~- 57 (250)
.+||+||..+...+ .. + ......|+++|.++.++...... + + ..+
T Consensus 12 ~~kv~ill~dg~e~-~E-----~-~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 84 (396)
T 3uk7_A 12 SRTVLILCGDYMED-YE-----V-MVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDE 84 (396)
T ss_dssp CCEEEEECCTTEEH-HH-----H-HHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGG
T ss_pred CCeEEEEeCCCccH-HH-----H-HHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhh
Confidence 47899998643322 11 1 12356888899988877543210 0 0 011
Q ss_pred -CCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 58 -DLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 58 -~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
+..++|+||+|||... ........+.++++++.++++||.+||-|.++|+.+
T Consensus 85 ~~~~~~D~livpGG~~~--~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 85 VDLSKYDGLVIPGGRAP--EYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp CCGGGCSEEEECCBSHH--HHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred cCcccCCEEEECCCcch--hhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 1357999999999642 111123578889999999999999999999999986
No 67
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=97.92 E-value=1.8e-05 Score=66.97 Aligned_cols=79 Identities=10% Similarity=0.060 Sum_probs=57.7
Q ss_pred HHHHhcCCCceEEEEeecCCCC--------------------------C---CC------CCCCcCEEEEcCCCCCCCCC
Q 025645 33 VAAFGEEGERWDLFRVVEGDFP--------------------------D---FN------DLHKYDGFVISGSPYDAYGN 77 (250)
Q Consensus 33 ~~~l~~~g~~~~~~~~~~~~~~--------------------------~---~~------~l~~~dglIi~Gg~~~~~~~ 77 (250)
...|+++|.++.++....+..+ + .+ +..++|+||||||.+... +
T Consensus 82 ~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~-~ 160 (291)
T 1n57_A 82 LYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALI-G 160 (291)
T ss_dssp HHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGS-S
T ss_pred HHHHHHCCCEEEEEeCCCCcccccccccccccHHHHHHHHhccceecCCccHHHHhhhccCcccCCEEEecCCcchhh-h
Confidence 4678889999998876443221 0 11 246899999999964321 2
Q ss_pred ChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHc
Q 025645 78 DNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRAL 112 (250)
Q Consensus 78 ~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~ 112 (250)
......+.++++++.+.+++|.+||.|..+|+.+-
T Consensus 161 l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 161 LPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred hhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence 33346788999999999999999999999887763
No 68
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=97.90 E-value=1.6e-05 Score=70.10 Aligned_cols=97 Identities=22% Similarity=0.255 Sum_probs=64.4
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC------------------------C---CCCC-
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD------------------------F---PDFN- 57 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~------------------------~---~~~~- 57 (250)
.+||+||..+.... .. + ......|+++|.++.++....+. + ...+
T Consensus 205 ~~ki~ill~dg~~~-~e-----~-~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 277 (396)
T 3uk7_A 205 NKRILFLCGDYMED-YE-----V-KVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDD 277 (396)
T ss_dssp CCEEEEECCTTEEH-HH-----H-HHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGG
T ss_pred cceEEEEecCCCcc-hh-----H-HHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHH
Confidence 46899997653332 11 1 12346788889888877543211 0 0111
Q ss_pred -CCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 58 -DLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 58 -~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
...++|.||+|||... +.......+.++++++.+.++||.+||-|.++|+.+
T Consensus 278 ~~~~~~D~livpGg~~~--~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 278 LVSSSYDALVIPGGRAP--EYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp CCGGGCSEEEECCBSHH--HHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred CCcccCCEEEECCCcch--hhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 1347999999999641 111123578889999999999999999999999986
No 69
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=97.89 E-value=2.7e-05 Score=64.54 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=63.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHH-hcCCCceEEEEeecCCC---------CC--CCCC-CCcCEEEEcCCC-
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAF-GEEGERWDLFRVVEGDF---------PD--FNDL-HKYDGFVISGSP- 71 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~---------~~--~~~l-~~~dglIi~Gg~- 71 (250)
++||+||..+..... . +.. ..+.| +..|.++.++....+.. ++ .+++ ..||.||||||.
T Consensus 23 ~~~I~ill~~gf~~~-e-----~~~-p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~~~yD~liVPGG~~ 95 (253)
T 3ewn_A 23 DEQIAMLVYPGMTVM-D-----LVG-PHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCPRDLTVLFAPGGTD 95 (253)
T ss_dssp CCEEEEECCTTBCHH-H-----HHH-HHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSCSSCSEEEECCBSH
T ss_pred CeEEEEEeCCCCcHH-H-----HHH-HHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcCCCCCEEEECCCcc
Confidence 378999986644331 1 112 34566 56788888776543221 11 1112 357999999996
Q ss_pred CCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 72 YDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
+.. .......+.++++++.+.+++|.+||-|..+|+.+
T Consensus 96 g~~--~l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 96 GTL--AAASDAETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp HHH--HHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred chh--hhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 321 11112578889999999999999999999999986
No 70
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=97.59 E-value=2.8e-05 Score=61.73 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=56.8
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCC------------CC--CCC-------CCCcCEE
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDF------------PD--FND-------LHKYDGF 65 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~------------~~--~~~-------l~~~dgl 65 (250)
+||+||..+...+ +.- .. ....|+++|.++.++.+..+.. ++ .++ .++||+|
T Consensus 5 ~kV~ill~dGfe~-~E~-----~~-p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~l 77 (194)
T 4gdh_A 5 VKVCLFVADGTDE-IEF-----SA-PWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIA 77 (194)
T ss_dssp CCEEEEEETTCCH-HHH-----HH-HHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEE
T ss_pred CEEEEEECCCcCH-HHH-----HH-HHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEE
Confidence 5899998764432 221 11 2467888999888776543211 00 011 1348999
Q ss_pred EEcCCCCCCCCCChhHHHHHHHHHHHHh-cCCcEEEEehHHHHH
Q 025645 66 VISGSPYDAYGNDNWILKLCFMLQTLDA-MQKKVLGICFGHQVL 108 (250)
Q Consensus 66 Ii~Gg~~~~~~~~~~~~~~~~~i~~~~~-~~~PilGIC~G~Qll 108 (250)
|||||.... +.....+.+.++++++.+ .++++-.||.|..++
T Consensus 78 vvPGG~~~~-~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~l~ 120 (194)
T 4gdh_A 78 IIPGGGLGA-KTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTA 120 (194)
T ss_dssp EECCCHHHH-HHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGHHH
T ss_pred EECCCchhH-hHhhhCHHHHHHHHHhhhcCCceEEeecccccch
Confidence 999984321 111112567788888765 478999999998443
No 71
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=97.23 E-value=3.3e-05 Score=65.22 Aligned_cols=98 Identities=10% Similarity=0.012 Sum_probs=63.6
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCC-ceEEEEeecCC-CCCC---CCCCCcCEEEEcCCCCCCCCCChhH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGE-RWDLFRVVEGD-FPDF---NDLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~-~~~~---~~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
.||+++-+....+. .|.+.+.+.|++.|+ ++..+.+...+ ..++ +.+.++|+|+++||....+-..-.-
T Consensus 57 ~~I~~IptAs~~~~------~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~ 130 (291)
T 3en0_A 57 AIIGIIPSASREPL------LIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLAD 130 (291)
T ss_dssp CEEEEECTTCSSHH------HHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHHHHHTT
T ss_pred CeEEEEeCCCCChH------HHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHHHHHHh
Confidence 58999876554432 244556788888898 56666553211 1111 1356789999999964221110001
Q ss_pred HHHHHHHHHHHhcC-CcEEEEehHHHHHHH
Q 025645 82 LKLCFMLQTLDAMQ-KKVLGICFGHQVLCR 110 (250)
Q Consensus 82 ~~~~~~i~~~~~~~-~PilGIC~G~Qlla~ 110 (250)
..+.+.|+++.+.+ .|+.|+|.|+-+++.
T Consensus 131 t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 131 TPLMDRIRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp CHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred CCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence 35677888888888 999999999988765
No 72
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=97.12 E-value=0.00021 Score=58.50 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=54.9
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCC--CceEEEEeecCCC---------CC--CCCCCCcCEEEEcCC-
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEG--ERWDLFRVVEGDF---------PD--FNDLHKYDGFVISGS- 70 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~---------~~--~~~l~~~dglIi~Gg- 70 (250)
..+||+||..+..... . +. .....|+..+ .++.++. ..+.. ++ .++..++|.||||||
T Consensus 19 ~~~kV~ill~dGf~~~-e-----~~-~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~~~~~D~liVPGG~ 90 (236)
T 3bhn_A 19 GMYKVGIVLFDDFTDV-D-----FF-LMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSEVKEQDVVLITSGY 90 (236)
T ss_dssp -CEEEEEECCTTBCHH-H-----HH-HHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGGGGGCSEEEECCCT
T ss_pred CCCEEEEEeCCCChHH-H-----HH-HHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCcccccccCCCEEEEcCCc
Confidence 4578999986543321 1 11 1345666655 4666554 22110 11 122467999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhcCC-cEEEEehHHHHHHHH
Q 025645 71 PYDAYGNDNWILKLCFMLQTLDAMQK-KVLGICFGHQVLCRA 111 (250)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~~~~~-PilGIC~G~Qlla~a 111 (250)
++.. +......+.+++ ..+.++ +|.+||-|..+|+.+
T Consensus 91 ~g~~--~l~~~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 91 RGIP--AALQDENFMSAL--KLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp THHH--HHHTCHHHHHHC--CCCTTTCEEEEETTHHHHHHHT
T ss_pred cCHh--hhccCHHHHHHH--HhCCCCCEEEEEcHHHHHHHHc
Confidence 4321 111124556666 334456 999999999999986
No 73
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=96.13 E-value=0.48 Score=39.43 Aligned_cols=172 Identities=12% Similarity=0.037 Sum_probs=94.2
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCC-CceEEEEeec-----CCCCCCCCCCCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEG-ERWDLFRVVE-----GDFPDFNDLHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~-----~~~~~~~~l~~~dglIi~Gg~~~~~~~~~ 79 (250)
+.||+|+.-...++. . .....+.++|++.| .++++..... ..+ . +.|+++|.||+.-. .. .
T Consensus 4 ~~kvLiv~G~~~H~~-~----~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f-~-~~L~~~D~vV~~~~-~~-----~ 70 (281)
T 4e5v_A 4 PIKTLLITGQNNHNW-Q----VSHVVLKQILENSGRFDVDFVISPEQGKDMSGF-V-LDFSPYQLVVLDYN-GD-----S 70 (281)
T ss_dssp CEEEEEEESCCSSCH-H----HHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTC-C-CCCTTCSEEEECCC-SS-----C
T ss_pred ceEEEEEcCCCCCCh-H----HHHHHHHHHHHhcCCEEEEEEeCCccccchhHH-h-hhhhcCCEEEEeCC-CC-----c
Confidence 467888864333331 1 13356888999888 7877765321 122 2 36899999997432 11 1
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEehHHHH------HHHHcC-ceE------------------Eec-CC---Ccee--eEE
Q 025645 80 WILKLCFMLQTLDAMQKKVLGICFGHQV------LCRALG-GKV------------------GKA-YT---GWDI--GLR 128 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGIC~G~Ql------la~a~g-g~v------------------~~~-~~---~~~~--g~~ 128 (250)
+.....+.+...++.|.+++|+..+.-. -...+| |.- .+. .. ..|. ...
T Consensus 71 l~~~~~~~l~~yV~~Ggglv~~H~a~~~~~~w~~y~~liG~g~f~~r~~~~gp~~~~~~g~~v~~~~~g~~~~Hp~~~~~ 150 (281)
T 4e5v_A 71 WPEETNRRFLEYVQNGGGVVIYHAADNAFSKWPEFNRICALGGWEGRNENSGPYVYWKDGKLVKDSSAGPGGSHGRQHEY 150 (281)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEGGGGGSCTTCHHHHHHHSCBCCTTCSGGGCCEEEEETTEEEEECCSCCSCBCCSCEEE
T ss_pred CCHHHHHHHHHHHHcCCCEEEEecccccCCCCHHHHHheecccccccccccccceeecccccccccccccccCCCCCceE
Confidence 2345566667777889999999876432 234456 532 110 00 1112 223
Q ss_pred EEEEecCCCCCCcccccCCCCCceEEEeeeccccc-ccCCccEEEEEcCCC-------c--eEEEEE---CCc-EEEEec
Q 025645 129 RVRIVNDLAPCSFLEDLGEIPGSLSIMECHRDEVW-KVPIGAEVIGFSDKT-------G--VEMFTI---GDH-ILGIQG 194 (250)
Q Consensus 129 ~i~~~~~~~~~~l~~~~~~l~~~~~~~~~H~~~v~-~lp~~~~~la~s~~~-------~--v~~~~~---~~~-~~g~Qf 194 (250)
.|.+.+ ..+|+.++ +|+.+....---|... ...++..+|++.... . -.+..+ +++ +|...+
T Consensus 151 ~v~v~~--~~HPit~G---l~~~~~~~~dE~Y~~~~~p~~~~~VL~t~~~~~~~~~~g~~~Pv~W~~~~g~GRvFyt~lG 225 (281)
T 4e5v_A 151 VLNGRD--KVHPVVKG---LPLKWRHAKDELYDRMRGPGNIRDILYTAYSDKETNGSGREEPLVFTVDYGNARIFHTMLG 225 (281)
T ss_dssp EEEESC--SSSTTTTT---SCSEEEEEEECCCBSCBSCCCEEEEEEEEECCGGGTCCSSEEEEEEEECSTTCEEEEECCC
T ss_pred EEEEcC--CCCchhhC---CCCcccccccCCcccccCCCCCCEEEEEEeccCcCCCCCCcceEEEEEEeCCeeEEEECCC
Confidence 444433 47899888 7765442222222222 233568888877541 1 223333 235 677888
Q ss_pred C
Q 025645 195 H 195 (250)
Q Consensus 195 H 195 (250)
|
T Consensus 226 H 226 (281)
T 4e5v_A 226 H 226 (281)
T ss_dssp C
T ss_pred C
Confidence 8
No 74
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=96.05 E-value=0.48 Score=38.74 Aligned_cols=177 Identities=15% Similarity=0.099 Sum_probs=95.4
Q ss_pred cceEEEEecCCCChh----HHHhhC-CHHHHHHHHHhcCCCceEEEEeecC-CCCCCCCCCCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDY----VLKVYG-GYFNVFVAAFGEEGERWDLFRVVEG-DFPDFNDLHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~----~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~l~~~dglIi~Gg~~~~~~~~~ 79 (250)
++||.|..- ..++. +...|. ...+.+.++|++.|.+++....... ...+++.|+++|.||+-|.... + .
T Consensus 7 ~~~vlv~~~-~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~--~--~ 81 (252)
T 1t0b_A 7 PIRVVVWNE-FRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAH--D--E 81 (252)
T ss_dssp CCEEEEEEC-CCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCG--G--G
T ss_pred CcEEEEECC-ccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCC--C--c
Confidence 468888863 23322 222222 2345678899999988877543221 1223345889999999542110 0 1
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEehHH--HHHHHHcCceEEecCCCce--eeEEEEEEecCCCCCCcccccCCCCCceEEE
Q 025645 80 WILKLCFMLQTLDAMQKKVLGICFGH--QVLCRALGGKVGKAYTGWD--IGLRRVRIVNDLAPCSFLEDLGEIPGSLSIM 155 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGIC~G~--Qlla~a~gg~v~~~~~~~~--~g~~~i~~~~~~~~~~l~~~~~~l~~~~~~~ 155 (250)
+.+...+.+++..+.|..++||=.|+ +.....+||... ..+. .....+.+.+ ..+++.++ +|+.+.+.
T Consensus 82 l~~~~~~al~~~V~~GgG~vgiH~a~~~~~y~~llGg~f~---~~~~~~~~~~~v~v~~--~~HPit~g---l~~~f~~~ 153 (252)
T 1t0b_A 82 VKDEVVERVHRRVLEGMGLIVLHSGHFSKIFKKLMGTTCN---LKWREADEKERLWVVA--PGHPIVEG---IGPYIELE 153 (252)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEEGGGGGSHHHHHHHCSCCC---CEEEEEEEEEEEEESC--TTSGGGTT---CCSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCEEEEcccCCcHHHHhhhCCccc---CCCccCCceEEEEECC--CCChhhcC---CCCCcEec
Confidence 22455666777788899999996553 334556777632 1122 1123344433 47889888 77666554
Q ss_pred eeeccc-ccc-cCCccEEEEEcC-CCc----eEEEEEC-CcEEEEe-cC
Q 025645 156 ECHRDE-VWK-VPIGAEVIGFSD-KTG----VEMFTIG-DHILGIQ-GH 195 (250)
Q Consensus 156 ~~H~~~-v~~-lp~~~~~la~s~-~~~----v~~~~~~-~~~~g~Q-fH 195 (250)
.-.-|. ... ..++..++.... ++. ..+..++ ++++.+. +|
T Consensus 154 dee~Y~~~~~~p~~~~~vl~~~~~~G~~~~~p~~w~~g~GRvfY~~lGH 202 (252)
T 1t0b_A 154 QEEMYGEFFDIPEPDETIFISWFEGGEVFRSGCTFTRGKGKIFYFRPGH 202 (252)
T ss_dssp EEEEEESCCCSCCCSEEEEEEEETTSCEEEEEEEEEETTEEEEEECCCC
T ss_pred cceeeeeccCCCCCCceEEeeeccCCccccEEEEEEECCccEEEECCCC
Confidence 221221 012 222344444322 341 2234444 3776665 99
No 75
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=94.48 E-value=0.087 Score=38.20 Aligned_cols=97 Identities=9% Similarity=0.038 Sum_probs=53.9
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC------CCCCCCCCCcCEEEEcCCCCCCCCC
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD------FPDFNDLHKYDGFVISGSPYDAYGN 77 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~------~~~~~~l~~~dglIi~Gg~~~~~~~ 77 (250)
.++++|||+..+.+.. .+.....+.|.+.|.++.+++....+ +++..++...|.++|.=.+....+-
T Consensus 2 ~~p~siAVVGaS~~~~-------~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~vDlavi~~p~~~v~~~ 74 (122)
T 3ff4_A 2 NAMKKTLILGATPETN-------RYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYINPQNQLSE 74 (122)
T ss_dssp CCCCCEEEETCCSCTT-------SHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSCHHHHGGG
T ss_pred CCCCEEEEEccCCCCC-------CHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCCCCEEEEEeCHHHHHHH
Confidence 3467899998776543 35555677787888876666543322 3444444335666655322100000
Q ss_pred ----------ChhHH---HHHHHHHHHHhcCCcEEEEehHHHH
Q 025645 78 ----------DNWIL---KLCFMLQTLDAMQKKVLGICFGHQV 107 (250)
Q Consensus 78 ----------~~~~~---~~~~~i~~~~~~~~PilGIC~G~Ql 107 (250)
.-|+. ...++.+.+.+.++.++|=|+|.++
T Consensus 75 v~e~~~~g~k~v~~~~G~~~~e~~~~a~~~Girvv~nC~gv~l 117 (122)
T 3ff4_A 75 YNYILSLKPKRVIFNPGTENEELEEILSENGIEPVIGCTLVML 117 (122)
T ss_dssp HHHHHHHCCSEEEECTTCCCHHHHHHHHHTTCEEEESCHHHHH
T ss_pred HHHHHhcCCCEEEECCCCChHHHHHHHHHcCCeEECCcCeEEe
Confidence 00100 0135566667778888888888765
No 76
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=93.52 E-value=0.21 Score=42.10 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=46.7
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-----------------CCC---C-CCCCCcCEE
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-----------------FPD---F-NDLHKYDGF 65 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-----------------~~~---~-~~l~~~dgl 65 (250)
+||+|+.. +..+... .....+.++|++.|.++.+....... ... . ...+++|.+
T Consensus 5 ~ki~iI~n-~~~~~~~----~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~v 79 (307)
T 1u0t_A 5 RSVLLVVH-TGRDEAT----ETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELV 79 (307)
T ss_dssp CEEEEEES-SSGGGGS----HHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCE
T ss_pred CEEEEEEe-CCCHHHH----HHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEE
Confidence 57888753 3333221 23455788999999887654322211 110 0 123468999
Q ss_pred EEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 66 VISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 66 Ii~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
|..||-+ .+...++.+...++|++||=.|.
T Consensus 80 i~~GGDG----------T~l~a~~~~~~~~~pvlgi~~G~ 109 (307)
T 1u0t_A 80 LVLGGDG----------TFLRAAELARNASIPVLGVNLGR 109 (307)
T ss_dssp EEEECHH----------HHHHHHHHHHHHTCCEEEEECSS
T ss_pred EEEeCCH----------HHHHHHHHhccCCCCEEEEeCCC
Confidence 9999832 34455565556689999997773
No 77
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.80 E-value=0.072 Score=40.00 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=32.7
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEeh
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICF 103 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~ 103 (250)
.++|.|||.||-.-+.-... .+...++|..+.+.+.+|+|||+
T Consensus 83 ~~~D~vVllGGLAMPk~~v~-~e~v~~li~ki~~~~~kiiGvCF 125 (157)
T 2r47_A 83 GNVDVLVLLGGLSMPGIGSD-IEDVKKLVEDALEEGGELMGLCY 125 (157)
T ss_dssp CCEEEEEEEGGGGSTTTSCC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEEeccccCCCCCCC-HHHHHHHHHHhhcCCCCEEEEEh
Confidence 58999999999655432211 46778888888777788999997
No 78
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=91.05 E-value=0.65 Score=32.94 Aligned_cols=56 Identities=14% Similarity=0.278 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
+.|..+|...|.++.- ..++..|++|+.-|..+.+ .+|+. ..|+.+.+.++|++||
T Consensus 18 ~~L~~~l~~~~f~~~~-----------~~I~~~~~vIvL~G~~t~~--s~wv~---~EI~~A~~~gkpIigV 73 (111)
T 1eiw_A 18 RVFLERLEQSGLEWRP-----------ATPEDADAVIVLAGLWGTR--RDEIL---GAVDLARKSSKPIITV 73 (111)
T ss_dssp HHHHHHHHHHCSCEEE-----------CCSSSCSEEEEEGGGTTTS--HHHHH---HHHHHHTTTTCCEEEE
T ss_pred HHHHHHHhCCCCeeec-----------CccccCCEEEEEeCCCcCC--ChHHH---HHHHHHHHcCCCEEEE
Confidence 3455666555766543 3578899999998866543 34544 3567788899999998
No 79
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=89.90 E-value=1.5 Score=35.40 Aligned_cols=80 Identities=6% Similarity=0.031 Sum_probs=45.6
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHH
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKL 84 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~ 84 (250)
.+.+|+++..+...++... +..-+.+.+++.|.++.++....+. .....+ ++||||+.+...+ .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~-~~~~~~-~vdgiI~~~~~~~--------~-- 70 (277)
T 3cs3_A 7 QTNIIGVYLADYGGSFYGE----LLEGIKKGLALFDYEMIVCSGKKSH-LFIPEK-MVDGAIILDWTFP--------T-- 70 (277)
T ss_dssp CCCEEEEEECSSCTTTHHH----HHHHHHHHHHTTTCEEEEEESTTTT-TCCCTT-TCSEEEEECTTSC--------H--
T ss_pred CCcEEEEEecCCCChhHHH----HHHHHHHHHHHCCCeEEEEeCCCCH-HHHhhc-cccEEEEecCCCC--------H--
Confidence 4567999986655544322 2344567788889888766533211 111123 7999999875321 1
Q ss_pred HHHHHHHHhcCCcEEEE
Q 025645 85 CFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGI 101 (250)
+.++.+.+.++|++-+
T Consensus 71 -~~~~~l~~~~iPvV~~ 86 (277)
T 3cs3_A 71 -KEIEKFAERGHSIVVL 86 (277)
T ss_dssp -HHHHHHHHTTCEEEES
T ss_pred -HHHHHHHhcCCCEEEE
Confidence 1233444567777654
No 80
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=89.53 E-value=0.5 Score=39.27 Aligned_cols=73 Identities=22% Similarity=0.272 Sum_probs=45.4
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
.|||+|+... ..+ ...+.++|++.|+++.... . ....+.++|.+|.-||-+ .++
T Consensus 29 ~mki~iv~~~-~~~---------~~~l~~~L~~~g~~v~~~~---~---~~~~~~~~DlvIvlGGDG----------T~L 82 (278)
T 1z0s_A 29 GMRAAVVYKT-DGH---------VKRIEEALKRLEVEVELFN---Q---PSEELENFDFIVSVGGDG----------TIL 82 (278)
T ss_dssp -CEEEEEESS-STT---------HHHHHHHHHHTTCEEEEES---S---CCGGGGGSSEEEEEECHH----------HHH
T ss_pred ceEEEEEeCC-cHH---------HHHHHHHHHHCCCEEEEcc---c---cccccCCCCEEEEECCCH----------HHH
Confidence 4688888543 232 2346789999998875432 1 112345789999999832 223
Q ss_pred HHHHHHHhcCCcEEEEehHH
Q 025645 86 FMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC~G~ 105 (250)
...+.+... +||+||=.|.
T Consensus 83 ~aa~~~~~~-~PilGIN~G~ 101 (278)
T 1z0s_A 83 RILQKLKRC-PPIFGINTGR 101 (278)
T ss_dssp HHHTTCSSC-CCEEEEECSS
T ss_pred HHHHHhCCC-CcEEEECCCC
Confidence 333443334 9999998885
No 81
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=88.89 E-value=0.2 Score=38.38 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=43.2
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCC--CcCEEEEcCCCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLH--KYDGFVISGSPYDA 74 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~--~~dglIi~Gg~~~~ 74 (250)
+++|++||.+++.-. ..++.-...+.+.|++.|.++..+.+..++... ...++ ++|.||.+||-+-.
T Consensus 12 ~~~rv~Ii~tGdElg---~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g 85 (169)
T 1y5e_A 12 KEVRCKIVTISDTRT---EETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGIT 85 (169)
T ss_dssp CCCEEEEEEECSSCC---TTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSS
T ss_pred cCCEEEEEEEcCccC---eeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 356899999776542 233344467788999999988766555443211 01134 78999999986543
No 82
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=88.88 E-value=1.4 Score=36.18 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=44.8
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCF 86 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~ 86 (250)
|||+|+.. + .+... .....+.++|++.|.++. .+++|.||..||-+ .+..
T Consensus 1 mki~ii~n-~-~~~~~----~~~~~l~~~l~~~g~~v~--------------~~~~D~vv~lGGDG----------T~l~ 50 (272)
T 2i2c_A 1 MKYMITSK-G-DEKSD----LLRLNMIAGFGEYDMEYD--------------DVEPEIVISIGGDG----------TFLS 50 (272)
T ss_dssp CEEEEEEC-C-SHHHH----HHHHHHHHHHTTSSCEEC--------------SSSCSEEEEEESHH----------HHHH
T ss_pred CEEEEEEC-C-CHHHH----HHHHHHHHHHHHCCCEeC--------------CCCCCEEEEEcCcH----------HHHH
Confidence 47888865 3 22221 123456788999998751 24689999999832 3344
Q ss_pred HHHHHHhc--CCcEEEEehHH
Q 025645 87 MLQTLDAM--QKKVLGICFGH 105 (250)
Q Consensus 87 ~i~~~~~~--~~PilGIC~G~ 105 (250)
..+.+... ++|++||=.|.
T Consensus 51 aa~~~~~~~~~~PilGIn~G~ 71 (272)
T 2i2c_A 51 AFHQYEERLDEIAFIGIHTGH 71 (272)
T ss_dssp HHHHTGGGTTTCEEEEEESSS
T ss_pred HHHHHhhcCCCCCEEEEeCCC
Confidence 55555554 89999998774
No 83
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=88.37 E-value=0.28 Score=37.91 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=42.1
Q ss_pred ccceEEEEecCCCCh-hH-H--HhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCC--cCEEEEcCCCCC
Q 025645 5 EEKRYALFLAAKDSD-YV-L--KVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHK--YDGFVISGSPYD 73 (250)
Q Consensus 5 ~~~riail~~~~~~~-~~-~--~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~--~dglIi~Gg~~~ 73 (250)
+++|++||.+++..- .. . ..++.-..++..+|++.|.++..+.+..++... ...+++ +|.||.+||-+-
T Consensus 14 ~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~ 93 (178)
T 2pjk_A 14 KSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred CCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 356899999874210 00 1 123344467889999999988776655443211 011234 899999998653
No 84
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=88.14 E-value=0.11 Score=39.75 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=41.3
Q ss_pred ccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----CCC-CCcCEEEEcCCCCC
Q 025645 3 LMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----NDL-HKYDGFVISGSPYD 73 (250)
Q Consensus 3 ~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~l-~~~dglIi~Gg~~~ 73 (250)
+|+++|++||.+++.-- .-..++....++..+|++.|.++..+.+..++ ... ..+ .++|.||.+||-+-
T Consensus 4 ~~~~~rv~ii~tGdEl~-~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~ 78 (164)
T 3pzy_A 4 SMTTRSARVIIASTRAS-SGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGI 78 (164)
T ss_dssp ---CCEEEEEEECHHHH-C----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred CCCCCEEEEEEECCCCC-CCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 56778999998764311 11344556678889999999987655444433 211 012 36899999998653
No 85
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=87.63 E-value=0.24 Score=41.28 Aligned_cols=84 Identities=14% Similarity=0.072 Sum_probs=47.9
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-----CC--C-CCCCCCcCEEEEcCCCCCCCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-----FP--D-FNDLHKYDGFVISGSPYDAYGND 78 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-----~~--~-~~~l~~~dglIi~Gg~~~~~~~~ 78 (250)
+||+|+... ..+.. ......+.++|++.|.++.+....... .+ . .....++|.||..||-+
T Consensus 6 kki~ii~np-~~~~~----~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDG------ 74 (292)
T 2an1_A 6 KCIGIVGHP-RHPTA----LTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDG------ 74 (292)
T ss_dssp CEEEEECC------------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHH------
T ss_pred cEEEEEEcC-CCHHH----HHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCcH------
Confidence 578888543 22221 134455778899999887654321111 00 0 00113579999999932
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 79 NWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 79 ~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
.+.+.++.+...++|+|||=.|.
T Consensus 75 ----T~l~a~~~~~~~~~P~lGI~~Gt 97 (292)
T 2an1_A 75 ----NMLGAARTLARYDINVIGINRGN 97 (292)
T ss_dssp ----HHHHHHHHHTTSSCEEEEBCSSS
T ss_pred ----HHHHHHHHhhcCCCCEEEEECCC
Confidence 34555666666689999997664
No 86
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=87.62 E-value=0.74 Score=37.46 Aligned_cols=85 Identities=9% Similarity=0.051 Sum_probs=49.6
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCC-----CCCcCEEEEcCCCCCCCCCCh
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFND-----LHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-----l~~~dglIi~Gg~~~~~~~~~ 79 (250)
++.+|+++..+...++... +..-+.+.+++.|.++.+.....+....... -.++||||+.+...+.
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~----- 77 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQR----LINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVY----- 77 (293)
T ss_dssp --CEEEEEESCSCSHHHHH----HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTT-----
T ss_pred CCcEEEEEEecCCcHHHHH----HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHH-----
Confidence 4568999997776665433 2344567788889988776532110000000 1479999998753222
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEe
Q 025645 80 WILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGIC 102 (250)
..+.++.+.+.++|++-+.
T Consensus 78 ----~~~~~~~~~~~~iPvV~~~ 96 (293)
T 3l6u_A 78 ----IGSAIEEAKKAGIPVFAID 96 (293)
T ss_dssp ----THHHHHHHHHTTCCEEEES
T ss_pred ----HHHHHHHHHHcCCCEEEec
Confidence 1234556667788887663
No 87
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=87.27 E-value=0.28 Score=37.68 Aligned_cols=68 Identities=10% Similarity=-0.027 Sum_probs=43.8
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----CCCC--CcCEEEEcCCCCCC
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----NDLH--KYDGFVISGSPYDA 74 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~l~--~~dglIi~Gg~~~~ 74 (250)
.+++|++||.+++.... .++.-..++.+.|++.|.++..+.+..++.... ..++ ++|.||.+||-+-.
T Consensus 8 ~~~~~v~Ii~tGdE~g~---i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~ 82 (172)
T 1mkz_A 8 FIPTRIAILTVSNRRGE---EDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLT 82 (172)
T ss_dssp CCCCEEEEEEECSSCCG---GGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSS
T ss_pred CCCCEEEEEEEeCCCCc---ccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCC
Confidence 34679999998766432 334445678899999999887665554432110 0122 48999999986543
No 88
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=86.58 E-value=0.56 Score=35.96 Aligned_cols=73 Identities=10% Similarity=0.066 Sum_probs=43.3
Q ss_pred ccceEEEEecCCCChhHHH----hhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-------CCCCCcCEEEEcCCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLK----VYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-------NDLHKYDGFVISGSPYD 73 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~----~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-------~~l~~~dglIi~Gg~~~ 73 (250)
.++|++||..++....-.. .++.-..++.++|++.|+++....+..++.... ....++|.||.+||-+-
T Consensus 14 ~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 14 KSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred CCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 3568999987642100000 012233568899999999988776655432110 11356899999998654
Q ss_pred CCCC
Q 025645 74 AYGN 77 (250)
Q Consensus 74 ~~~~ 77 (250)
..+|
T Consensus 94 ~~~D 97 (178)
T 3iwt_A 94 SPTD 97 (178)
T ss_dssp STTC
T ss_pred CCCC
Confidence 3333
No 89
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=85.87 E-value=1.1 Score=34.63 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=23.3
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeec
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVE 50 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 50 (250)
+||+|+..+ .. .-. ...+.+.+.+++.|.+++++.+..
T Consensus 5 mkilii~~S-~g-~T~----~la~~i~~~l~~~g~~v~~~~l~~ 42 (199)
T 2zki_A 5 PNILVLFYG-YG-SIV----ELAKEIGKGAEEAGAEVKIRRVRE 42 (199)
T ss_dssp CEEEEEECC-SS-HHH----HHHHHHHHHHHHHSCEEEEEECCC
T ss_pred cEEEEEEeC-cc-HHH----HHHHHHHHHHHhCCCEEEEEehhH
Confidence 589988766 32 211 122345566676788888887654
No 90
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=85.18 E-value=0.23 Score=38.19 Aligned_cols=68 Identities=15% Similarity=-0.038 Sum_probs=41.2
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCCCCcCEEEEcCCCCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDLHKYDGFVISGSPYDA 74 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l~~~dglIi~Gg~~~~ 74 (250)
.+|++||.+++.--. -+.+..-..++.++|++.|+++..+.+..++... ...++++|.||.+||-+-.
T Consensus 3 ~~~v~IistGdEll~-G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~ 75 (172)
T 3kbq_A 3 AKNASVITVGNEILK-GRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPT 75 (172)
T ss_dssp -CEEEEEEECHHHHT-TSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSS
T ss_pred CCEEEEEEEcccccC-CcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCC
Confidence 478999987642100 1122233457889999999998777665443211 0112458999999986543
No 91
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=84.41 E-value=2 Score=35.15 Aligned_cols=80 Identities=11% Similarity=-0.073 Sum_probs=50.3
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC-CCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP-DFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
+|++|+. ++..+ .-...|..+|++.|.+++.+.. .+.+ +.++|.+||.||++--... .+.....
T Consensus 5 ~~vLiV~-g~~~~-------~~a~~l~~aL~~~g~~V~~i~~--~~~~~~~~~L~~yDvIIl~d~~~~-----~l~~~~~ 69 (259)
T 3rht_A 5 TRVLYCG-DTSLE-------TAAGYLAGLMTSWQWEFDYIPS--HVGLDVGELLAKQDLVILSDYPAE-----RMTAQAI 69 (259)
T ss_dssp -CEEEEE-SSCTT-------TTHHHHHHHHHHTTCCCEEECT--TSCBCSSHHHHTCSEEEEESCCGG-----GBCHHHH
T ss_pred ceEEEEC-CCCch-------hHHHHHHHHHHhCCceEEEecc--cccccChhHHhcCCEEEEcCCccc-----cCCHHHH
Confidence 5777774 33211 2335678899999999987653 3333 3456889999999842211 1234556
Q ss_pred HHHHHHHhcCCcEEEE
Q 025645 86 FMLQTLDAMQKKVLGI 101 (250)
Q Consensus 86 ~~i~~~~~~~~PilGI 101 (250)
+.++.+.+.|.=++.+
T Consensus 70 ~~L~~yV~~GGgLi~~ 85 (259)
T 3rht_A 70 DQLVTMVKAGCGLVML 85 (259)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhCCeEEEe
Confidence 6677777777777776
No 92
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=84.36 E-value=0.98 Score=35.34 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=21.3
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhc---CCCceE-EEEe
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE---EGERWD-LFRV 48 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~~~-~~~~ 48 (250)
|..|++|||++|..+.... +++..+.+.+.+ .|.+++ ++.+
T Consensus 1 m~~M~~mkIl~I~GS~r~~-------s~t~~la~~~~~~~~~g~~v~~~idL 45 (199)
T 4hs4_A 1 MTTTSPLHFVTLLGSLRKA-------SFNAAVARALPEIAPEGIAITPLGSI 45 (199)
T ss_dssp ----CCEEEEEEECCCSTT-------CHHHHHHHHHHHHCCTTEEEEECCCG
T ss_pred CCCCCCCEEEEEEcCCCCC-------ChHHHHHHHHHHHccCCCEEEEEEeh
Confidence 6677889999998775532 344434433322 366666 5544
No 93
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=84.30 E-value=3.6 Score=33.48 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=48.5
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC--C-----CCCCcCEEEEcCCCCCCCC
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF--N-----DLHKYDGFVISGSPYDAYG 76 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~-----~l~~~dglIi~Gg~~~~~~ 76 (250)
|...+|+++..+...++.... ..-+.+.+++.|.++.+.......-+.. . .-.++||||+.+...+..
T Consensus 1 ~~~~~Igvi~~~~~~~~~~~~----~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~- 75 (297)
T 3rot_A 1 MVRDKYYLITHGSQDPYWTSL----FQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAF- 75 (297)
T ss_dssp --CCEEEEECSCCCSHHHHHH----HHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTT-
T ss_pred CceEEEEEEecCCCCchHHHH----HHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH-
Confidence 345789999887766654332 3445677788898877654221000000 0 015789999986533221
Q ss_pred CChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 77 NDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 77 ~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
...++.+.+.++|++-+
T Consensus 76 --------~~~~~~~~~~giPvV~~ 92 (297)
T 3rot_A 76 --------SKSLQRANKLNIPVIAV 92 (297)
T ss_dssp --------HHHHHHHHHHTCCEEEE
T ss_pred --------HHHHHHHHHCCCCEEEE
Confidence 22445666678888765
No 94
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=84.20 E-value=0.33 Score=37.82 Aligned_cols=67 Identities=16% Similarity=-0.034 Sum_probs=43.7
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-----CCCC-CCcCEEEEcCCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-----FNDL-HKYDGFVISGSPYD 73 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~l-~~~dglIi~Gg~~~ 73 (250)
+++|++||.+++.--. -+ ++....++..+|++.|.++..+.+..++... ...+ +++|.||.+||-+-
T Consensus 29 ~~~rvaIistGdEl~~-G~-~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~ 101 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAH-GD-EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGV 101 (185)
T ss_dssp CCEEEEEEEECHHHHT-TC-CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred CCCEEEEEEECcccCC-CC-cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 4668999987643110 11 5556678889999999988776665543211 0112 57899999998653
No 95
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=83.96 E-value=1.1 Score=36.71 Aligned_cols=84 Identities=11% Similarity=0.032 Sum_probs=48.2
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-CCC-----CCCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-FND-----LHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~-----l~~~dglIi~Gg~~~~~~~~~ 79 (250)
.++|+++..+...++... +..-+.+.+++.|.++.++.....+... ... -.++||||+.+......
T Consensus 4 ~~~I~~i~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~---- 75 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKR----CLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVEL---- 75 (305)
T ss_dssp -CEEEEEESSTTSTHHHH----HHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTT----
T ss_pred CceEEEEEccCCChHHHH----HHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHH----
Confidence 468999998877765433 2344567778889888764321111000 000 14689999987533221
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEe
Q 025645 80 WILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGIC 102 (250)
...++.+.+.++|++-+-
T Consensus 76 -----~~~~~~~~~~~iPvV~~~ 93 (305)
T 3g1w_A 76 -----TDTINKAVDAGIPIVLFD 93 (305)
T ss_dssp -----HHHHHHHHHTTCCEEEES
T ss_pred -----HHHHHHHHHCCCcEEEEC
Confidence 224455666788887553
No 96
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=83.65 E-value=4.6 Score=32.50 Aligned_cols=84 Identities=17% Similarity=0.140 Sum_probs=50.2
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCC-----CCCcCEEEEcCCCCCCCCCCh
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFND-----LHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-----l~~~dglIi~Gg~~~~~~~~~ 79 (250)
.+.+|+++..+...++... ...-+.+.+++.|.++.+.....+....... -.++||||+.+...
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------- 72 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLK----AYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNL------- 72 (291)
T ss_dssp TTCEEEEEESCCSSHHHHH----HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCH-------
T ss_pred CCcEEEEEeCCCCChHHHH----HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh-------
Confidence 4568999998776665432 2344667788889888776532110000000 14689999986521
Q ss_pred hHHHHHHHHHHHHhcCCcEEEE
Q 025645 80 WILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGI 101 (250)
......++.+.+.++|++-+
T Consensus 73 --~~~~~~~~~~~~~~iPvV~~ 92 (291)
T 3l49_A 73 --DVLNPWLQKINDAGIPLFTV 92 (291)
T ss_dssp --HHHHHHHHHHHHTTCCEEEE
T ss_pred --hhhHHHHHHHHHCCCcEEEe
Confidence 12334566667778887765
No 97
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=83.42 E-value=2.1 Score=35.49 Aligned_cols=47 Identities=9% Similarity=0.107 Sum_probs=30.1
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCC
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDF 53 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 53 (250)
|++|||+||...+....+... ..+.+.+.+++.|.+|+++++++..+
T Consensus 20 m~~MKiLII~aHP~~~S~n~a---L~~~~~~~l~~~G~eV~v~DLy~~~f 66 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGA---LKNFAIRHLQQAGHEVQVSDLYAMRW 66 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHH---HHHHHHHHHHHTTCEEEEEETTTTTC
T ss_pred hhCCeEEEEEeCCCCccHHHH---HHHHHHHHHHHCCCeEEEEEccccCC
Confidence 667899999877654321111 23445677888999999998765443
No 98
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=83.35 E-value=1.4 Score=41.00 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=67.5
Q ss_pred cceEEEEecCCCChhHH-----------HhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCC
Q 025645 6 EKRYALFLAAKDSDYVL-----------KVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDA 74 (250)
Q Consensus 6 ~~riail~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~ 74 (250)
+.|||||.+-...+... +.| +|.+ +.++|...+++++.+.... ....+.|+++|.||.+|-..++
T Consensus 438 ~~kVAVLnsWGklRSW~~~~vaHak~~kq~y-sy~G-ilEALsg~~~dV~FIsfdD--I~e~e~L~d~DVIIn~G~A~Ta 513 (759)
T 2zuv_A 438 ELNVAILNSWGKMRSWMAFTVAHALPNKQTY-SYYG-ILESLSGMRVNVRFISFDD--VLAHGIDSDIDVIINGGPVDTA 513 (759)
T ss_dssp CSEEEEEESSGGGGTTTTTCSSTTCCCTTTH-HHHH-HHHHHHTSSSEEEEEEHHH--HHHHCCCTTCCEEEEEECTTST
T ss_pred CceEEEEecCCCCcccccccccccccccccc-cHHH-HHHHHhcCCCceEEecHHH--hccccccccCCEEEecCcchhc
Confidence 46899998543222100 011 2333 6678888888888776432 1111457899999998855555
Q ss_pred CCCC-hh-HHHHHHHHHHHHhcCCcEEEEehH-----------HHHHHHHcCceEEe
Q 025645 75 YGND-NW-ILKLCFMLQTLDAMQKKVLGICFG-----------HQVLCRALGGKVGK 118 (250)
Q Consensus 75 ~~~~-~~-~~~~~~~i~~~~~~~~PilGIC~G-----------~Qlla~a~gg~v~~ 118 (250)
.... .| .+...++||++...|--++||.-= +| |+..||.....
T Consensus 514 lSgg~~W~~p~~~~aLR~fV~~GGgLIgVGepSsfqg~g~gryFq-LADVLGVd~e~ 569 (759)
T 2zuv_A 514 FTGGDVWTNPKLVETVRAWVRGGGAFVGVGEPSSAPRFQTGRFFQ-LADVIGVDEER 569 (759)
T ss_dssp TTCGGGGGCHHHHHHHHHHHHTTCEEEEEESTTEEEEEETTEEET-THHHHSEEECC
T ss_pred ccCccccCCHHHHHHHHHHHHcCCcEEEeCCccccccccCccccc-HHhhcCccccc
Confidence 4433 44 256788999999988888877531 23 77777765443
No 99
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=82.95 E-value=0.8 Score=38.57 Aligned_cols=85 Identities=11% Similarity=0.081 Sum_probs=49.3
Q ss_pred cccceEEEEecCCCC-hhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC----CC---CCcCEEEEcCCCCCCC
Q 025645 4 MEEKRYALFLAAKDS-DYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN----DL---HKYDGFVISGSPYDAY 75 (250)
Q Consensus 4 ~~~~riail~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~----~l---~~~dglIi~Gg~~~~~ 75 (250)
|++++|+++..+... ++... +..-+.+.+++.|.++.+.....+...... .+ .++||||+.+. ..
T Consensus 1 ~~~~~Ig~i~p~~~~~~f~~~----~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~--~~- 73 (350)
T 3h75_A 1 MSLTSVVFLNPGNSTETFWVS----YSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNE--QY- 73 (350)
T ss_dssp --CCEEEEEECSCTTCHHHHH----HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECC--SS-
T ss_pred CCCCEEEEECCCCCCChHHHH----HHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCc--hh-
Confidence 356789999877655 54332 234456777888998877643211000000 01 37999999852 11
Q ss_pred CCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 76 GNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 76 ~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
.....++.+.+.++|++-+.
T Consensus 74 -------~~~~~~~~~~~~giPvV~~~ 93 (350)
T 3h75_A 74 -------VAPQILRLSQGSGIKLFIVN 93 (350)
T ss_dssp -------HHHHHHHHHTTSCCEEEEEE
T ss_pred -------hHHHHHHHHHhCCCcEEEEc
Confidence 22345667777889988764
No 100
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=82.66 E-value=7.7 Score=31.14 Aligned_cols=81 Identities=11% Similarity=0.157 Sum_probs=45.6
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC----CC--CCCCcCEEEEcCCCCCCCCCChh
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD----FN--DLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~----~~--~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
.+|+++..+...++... +..-+.+.+++.|.++.+..... +... .. .-.++||||+.+...+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~~~~------ 71 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVV----LAETAKQRAEQLGYEATIFDSQN-DTAKESAHFDAIIAAGYDAIIFNPTDADG------ 71 (290)
T ss_dssp CEEEEEESCSSSHHHHH----HHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCSCTTT------
T ss_pred eEEEEEeCCCCChHHHH----HHHHHHHHHHHcCCEEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEecCChHH------
Confidence 68999987666655332 23445677888898876654221 1000 00 01478999998643221
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
..+.++.+.+.++|++-+
T Consensus 72 ---~~~~~~~~~~~~iPvV~~ 89 (290)
T 2fn9_A 72 ---SIANVKRAKEAGIPVFCV 89 (290)
T ss_dssp ---THHHHHHHHHTTCCEEEE
T ss_pred ---HHHHHHHHHHCCCeEEEE
Confidence 012344455568887654
No 101
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=82.22 E-value=0.66 Score=36.37 Aligned_cols=69 Identities=7% Similarity=-0.083 Sum_probs=38.6
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCc--eEEEEeecCCCCCC-----CCCC--CcCEEEEcCCCCC
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGER--WDLFRVVEGDFPDF-----NDLH--KYDGFVISGSPYD 73 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~~~~~~-----~~l~--~~dglIi~Gg~~~ 73 (250)
|+.+|++||.+++.-- .-..++.....+.++|++.|.+ +..+.+..++.... ..++ ++|.||.+||-+-
T Consensus 1 ~~~~rv~IIttGdEl~-~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~ 78 (195)
T 1di6_A 1 MATLRIGLVSISDRAS-SGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGP 78 (195)
T ss_dssp -CCEEEEEEEEECC--------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCCCEEEEEEECCCCC-CCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 3467999998765431 1123444556788999999987 34333333321110 0122 5899999998654
No 102
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=81.56 E-value=2.9 Score=31.98 Aligned_cols=58 Identities=9% Similarity=0.079 Sum_probs=33.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC----------------CCCCCCCcCEEEEcC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP----------------DFNDLHKYDGFVISG 69 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~----------------~~~~l~~~dglIi~G 69 (250)
+||+|+..+..... . ...+.+.+.+++.|.+++++.+.....+ ...++.++|+||+.-
T Consensus 6 ~kilii~~S~~g~T-~----~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gs 79 (200)
T 2a5l_A 6 PYILVLYYSRHGAT-A----EMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGS 79 (200)
T ss_dssp CEEEEEECCSSSHH-H----HHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEE
T ss_pred ceEEEEEeCCCChH-H----HHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEc
Confidence 58999876643211 1 1223455667778888888776442100 122356789998863
No 103
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=81.29 E-value=6.6 Score=32.08 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=48.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
+++|+++..+...++... +..-+.+.+++.|.++.+.....+...... .-.++||||+.+...+..
T Consensus 2 ~~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~----- 72 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQK----DRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVL----- 72 (313)
T ss_dssp -CEEEEEESCCSSSTTHH----HHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSC-----
T ss_pred CcEEEEEeCCCCChHHHH----HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhh-----
Confidence 357999987765554332 334466788888988877653211000000 015799999997633221
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
.+.++.+.+.++|++-+
T Consensus 73 ----~~~~~~~~~~~iPvV~~ 89 (313)
T 3m9w_A 73 ----SNVVKEAKQEGIKVLAY 89 (313)
T ss_dssp ----HHHHHHHHTTTCEEEEE
T ss_pred ----HHHHHHHHHCCCeEEEE
Confidence 23456666778888655
No 104
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=81.00 E-value=5.2 Score=32.47 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=47.1
Q ss_pred cccceEEEEec----CCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-C------CCCcCEEEEcCCCC
Q 025645 4 MEEKRYALFLA----AKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-D------LHKYDGFVISGSPY 72 (250)
Q Consensus 4 ~~~~riail~~----~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-~------l~~~dglIi~Gg~~ 72 (250)
.++..|+++.. +...+++.. +..-+.+.+++.|..+.+..... +... . -.++||||+.+...
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~vdGiIi~~~~~ 76 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLE----MISWIGIELGKRGLDLLLIPDEP---GEKYQSLIHLVETRRVDALIVAHTQP 76 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHH----HHHHHHHHHHHTTCEEEEEEECT---TCCCHHHHHHHHHTCCSEEEECSCCS
T ss_pred CccceEEEEecCCCccccChhHHH----HHHHHHHHHHHCCCEEEEEeCCC---hhhHHHHHHHHHcCCCCEEEEeCCCC
Confidence 34568999986 444444322 33445677888899888776432 1111 0 14799999987533
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 73 DAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 73 ~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
+. +.++.+.+.++|+.-+.
T Consensus 77 ~~-----------~~~~~l~~~~iPvV~~~ 95 (294)
T 3qk7_A 77 ED-----------FRLQYLQKQNFPFLALG 95 (294)
T ss_dssp SC-----------HHHHHHHHTTCCEEEES
T ss_pred Ch-----------HHHHHHHhCCCCEEEEC
Confidence 21 12344555677776553
No 105
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=80.52 E-value=3 Score=33.78 Aligned_cols=85 Identities=9% Similarity=-0.021 Sum_probs=48.9
Q ss_pred ccceEEEEecCC-CChhHHHhhCCHHHHHHHHHhcC-CCceEEEEeecCCCCCC------C--CCCCcCEEEEcCCCCCC
Q 025645 5 EEKRYALFLAAK-DSDYVLKVYGGYFNVFVAAFGEE-GERWDLFRVVEGDFPDF------N--DLHKYDGFVISGSPYDA 74 (250)
Q Consensus 5 ~~~riail~~~~-~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~------~--~l~~~dglIi~Gg~~~~ 74 (250)
++.+|+++..+. ..++... +..-+.+.+++. |..+.+........... . .-.++||||+.+...+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~----~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 82 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTD----VQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQY 82 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHH----HHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGG
T ss_pred CcceEEEEecCCCCchHHHH----HHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHH
Confidence 456899998776 5554332 234456777777 88887765432211100 0 12579999999753221
Q ss_pred CCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 75 YGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 75 ~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
....++.+.+.++|++-+.
T Consensus 83 ---------~~~~~~~~~~~~iPvV~~~ 101 (304)
T 3gbv_A 83 ---------TKGFTDALNELGIPYIYID 101 (304)
T ss_dssp ---------THHHHHHHHHHTCCEEEES
T ss_pred ---------HHHHHHHHHHCCCeEEEEe
Confidence 1224455556688877654
No 106
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=80.49 E-value=3.5 Score=35.53 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=48.7
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC--------C-----------CC-CCCCCCcCE
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD--------F-----------PD-FNDLHKYDG 64 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~--------~-----------~~-~~~l~~~dg 64 (250)
..++|+|+.--.+ +.+... ...+.++|.+.|+++.+-.-...+ + .+ .+..+++|.
T Consensus 37 ~~k~I~iv~K~~~-~~~~~~----~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 111 (365)
T 3pfn_A 37 SPKSVLVIKKMRD-ASLLQP----FKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDF 111 (365)
T ss_dssp CCCEEEEEECTTC-GGGHHH----HHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSE
T ss_pred CCCEEEEEecCCC-HHHHHH----HHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCE
Confidence 4567888864333 333222 244678888888766432110000 0 01 122357899
Q ss_pred EEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 65 FVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 65 lIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
+|..||-+. ++...+.+...+.||+||=.|.
T Consensus 112 vI~lGGDGT----------~L~aa~~~~~~~~PvlGiN~G~ 142 (365)
T 3pfn_A 112 IICLGGDGT----------LLYASSLFQGSVPPVMAFHLGS 142 (365)
T ss_dssp EEEESSTTH----------HHHHHHHCSSSCCCEEEEESSS
T ss_pred EEEEcChHH----------HHHHHHHhccCCCCEEEEcCCC
Confidence 999999442 2333444445679999999985
No 107
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=80.44 E-value=9.9 Score=30.30 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=48.5
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CC--CCCCcCEEEEcCCCCCCCCCCh
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FN--DLHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~--~l~~~dglIi~Gg~~~~~~~~~ 79 (250)
++.+|+++..+...++... +...+.+.+++.|.++.++....+.... .. .-.++||||+.+...
T Consensus 6 ~s~~Igvi~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------- 74 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTE----LFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN------- 74 (276)
T ss_dssp CCCEEEEEESCTTSHHHHH----HHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC-------
T ss_pred CCcEEEEEeCCCCchHHHH----HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc-------
Confidence 4568999987766665433 3344667888889888776532210000 00 015799999997532
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEe
Q 025645 80 WILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGIC 102 (250)
.+.++.+.+.++|+.-+.
T Consensus 75 -----~~~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 75 -----PQTVQEILHQQMPVVSVD 92 (276)
T ss_dssp -----HHHHHHHHTTSSCEEEES
T ss_pred -----HHHHHHHHHCCCCEEEEe
Confidence 123445555677776554
No 108
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=79.98 E-value=3.1 Score=33.72 Aligned_cols=82 Identities=10% Similarity=0.029 Sum_probs=45.1
Q ss_pred ccceEEEEecCCCC--hhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC---CC--CCcCEEEEcCCCCCCCCC
Q 025645 5 EEKRYALFLAAKDS--DYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN---DL--HKYDGFVISGSPYDAYGN 77 (250)
Q Consensus 5 ~~~riail~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~---~l--~~~dglIi~Gg~~~~~~~ 77 (250)
++.+|+|+..+... +++. .+..-+.+.+++.|.++.+.....+...... .+ .++||||+.+...+.
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~----~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--- 79 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTS----QMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND--- 79 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHH----HHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC---
T ss_pred CCCEEEEEecCCccccHHHH----HHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc---
Confidence 45679999865442 4322 2334456778888988776543221100000 01 579999998642211
Q ss_pred ChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 78 DNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 78 ~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
+.++.+.+.++|++-+
T Consensus 80 --------~~~~~l~~~~iPvV~i 95 (288)
T 3gv0_A 80 --------PRVRFMTERNMPFVTH 95 (288)
T ss_dssp --------HHHHHHHHTTCCEEEE
T ss_pred --------HHHHHHhhCCCCEEEE
Confidence 1234445567777654
No 109
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=79.46 E-value=2.2 Score=33.14 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=25.7
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeec
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVE 50 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 50 (250)
|+-+..+||+|+..+..... . ...+.+.+.+++.|.+++++.+..
T Consensus 1 ~~~~~mmkilii~~S~~g~T-~----~la~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 1 MSLTAPVKLAIVFYSSTGTG-Y----AMAQEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp ----CCCEEEEEECCSSSHH-H----HHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCcCCCCeEEEEEECCCChH-H----HHHHHHHHHHhcCCCEEEEEeccc
Confidence 43333468999987653211 1 122345566777899998888765
No 110
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=79.39 E-value=1.5 Score=35.62 Aligned_cols=87 Identities=9% Similarity=0.008 Sum_probs=49.2
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCC-----CCCcCEEEEcCCCCCCCCCChh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFND-----LHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-----l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
..+|+++..+...++.... ..-+.+.+++.|.++.++....+....... -.++||||+.+...+..+..
T Consensus 15 ~~~Igvi~~~~~~~~~~~~----~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~-- 88 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSI----IRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPN-- 88 (298)
T ss_dssp CCEEEEEESCSSSTTHHHH----HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTT--
T ss_pred CceEEEEeCCCCchHHHHH----HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCc--
Confidence 3679999877666553332 344567788889988776532110000000 15799999987643221111
Q ss_pred HHHHHHHHHHHHhcCCcEEEEe
Q 025645 81 ILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGIC 102 (250)
.+.++.+.+.++|+.-+.
T Consensus 89 ----~~~~~~~~~~~iPvV~~~ 106 (298)
T 3tb6_A 89 ----IGYYLNLEKNGIPFAMIN 106 (298)
T ss_dssp ----HHHHHHHHHTTCCEEEES
T ss_pred ----HHHHHHHHhcCCCEEEEe
Confidence 123455556688877654
No 111
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=78.48 E-value=14 Score=30.29 Aligned_cols=87 Identities=11% Similarity=0.023 Sum_probs=44.9
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcC-CCceEEEEeecCCCCC---CCC--CCCcCEEEEcCCCCCC
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEE-GERWDLFRVVEGDFPD---FND--LHKYDGFVISGSPYDA 74 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~---~~~--l~~~dglIi~Gg~~~~ 74 (250)
|...++.+|+++..+ ..++... +..-+.+.+++. |.++.+.....+.... ... -.++||||+.+...
T Consensus 1 ~~~~~~~~Igvi~~~-~~~~~~~----~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-- 73 (325)
T 2x7x_A 1 MDDTPHFRIGVAQCS-DDSWRHK----MNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEA-- 73 (325)
T ss_dssp -----CCEEEEEESC-CSHHHHH----HHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSH--
T ss_pred CCCCCCeEEEEEecC-CCHHHHH----HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCH--
Confidence 455556789999876 5544221 233455677777 8887665422110000 000 15799999986421
Q ss_pred CCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 75 YGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 75 ~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
......++.+.+.++|++.+
T Consensus 74 -------~~~~~~~~~~~~~~iPvV~~ 93 (325)
T 2x7x_A 74 -------APMTPIVEEAYQKGIPVILV 93 (325)
T ss_dssp -------HHHHHHHHHHHHTTCCEEEE
T ss_pred -------HHHHHHHHHHHHCCCeEEEe
Confidence 11223455555678887654
No 112
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=78.10 E-value=13 Score=29.28 Aligned_cols=82 Identities=9% Similarity=0.092 Sum_probs=46.9
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CC--CCCCcCEEEEcCCCCCCCCCChh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FN--DLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~--~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
+.+|+++..+...++... +..-+.+.+++.|.++.++....+.... .. .-.++||||+.+..... .+
T Consensus 2 s~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~---~~- 73 (272)
T 3o74_A 2 TRTLGFILPDLENPSYAR----IAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE---DD- 73 (272)
T ss_dssp CCEEEEEESCTTCHHHHH----HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS---CC-
T ss_pred ceEEEEEeCCCcChhHHH----HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc---HH-
Confidence 468999988776665433 3344667788889988776532110000 00 01478999998753211 11
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
.++.+.+.++|++-+
T Consensus 74 ------~~~~~~~~~iPvV~~ 88 (272)
T 3o74_A 74 ------SYRELQDKGLPVIAI 88 (272)
T ss_dssp ------HHHHHHHTTCCEEEE
T ss_pred ------HHHHHHHcCCCEEEE
Confidence 223445567777654
No 113
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=77.86 E-value=6.1 Score=32.48 Aligned_cols=83 Identities=17% Similarity=0.095 Sum_probs=48.5
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCC-----CCCcCEEEEcCCCCCCCCCChh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFND-----LHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-----l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
+.+|+++..+...+++.. +..-+.+.+++.|.++.+.....+....... -.++||||+.+....
T Consensus 3 ~~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~------- 71 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWID----DGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGT------- 71 (330)
T ss_dssp CCEEEEEECCSSSTHHHH----HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGG-------
T ss_pred CcEEEEEeCCCcchHHHH----HHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCch-------
Confidence 468999998776665432 2344667788889988776521110000000 146899999875321
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
.....++.+.+.++|++-+
T Consensus 72 --~~~~~~~~~~~~giPvV~~ 90 (330)
T 3uug_A 72 --TLSDVLKQAGEQGIKVIAY 90 (330)
T ss_dssp --GGHHHHHHHHHTTCEEEEE
T ss_pred --hHHHHHHHHHHCCCCEEEE
Confidence 1123456666778887654
No 114
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=77.16 E-value=0.68 Score=35.65 Aligned_cols=67 Identities=4% Similarity=-0.121 Sum_probs=38.2
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHh---cCCCceEEEEeecCCCCC-----CCCCC--CcCEEEEcCCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFG---EEGERWDLFRVVEGDFPD-----FNDLH--KYDGFVISGSPYD 73 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~---~~g~~~~~~~~~~~~~~~-----~~~l~--~~dglIi~Gg~~~ 73 (250)
+++|++||.+++.. .--..++.-..++.++|+ +.|.++ .+.+..++... ...++ ++|.||.+||-+-
T Consensus 4 ~~~rv~IistGdE~-~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~ 80 (178)
T 2pbq_A 4 KKAVIGVVTISDRA-SKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGP 80 (178)
T ss_dssp -CCEEEEEEECHHH-HHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCCEEEEEEeCCcC-CCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 45799999876421 001122333456778777 899988 44444433111 00122 6899999998654
No 115
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=76.79 E-value=4.1 Score=32.95 Aligned_cols=83 Identities=7% Similarity=-0.015 Sum_probs=41.1
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEE-EeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLF-RVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGND 78 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~ 78 (250)
++.+|+++..+...++... +..-+.+.+++.|.++.+. ....+...... .-.++||||+.+...+.
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~---- 78 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQ----ILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALTD---- 78 (290)
T ss_dssp -CCEEEEECCCCSSSHHHH----HHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC-------
T ss_pred cCCEEEEEeCCCCChHHHH----HHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCCH----
Confidence 3467999986655554332 2344567788889887665 32211100000 01578999998753211
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 79 NWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 79 ~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
+.++.+.+.++|++-+.
T Consensus 79 -------~~~~~l~~~~iPvV~~~ 95 (290)
T 3clk_A 79 -------DNLQLLQSSDVPYCFLS 95 (290)
T ss_dssp --------CHHHHHCC--CEEEES
T ss_pred -------HHHHHHHhCCCCEEEEc
Confidence 12233445678877653
No 116
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=76.65 E-value=0.67 Score=35.15 Aligned_cols=66 Identities=8% Similarity=-0.022 Sum_probs=41.0
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----CCCC--CcCEEEEcCCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----NDLH--KYDGFVISGSPYD 73 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~l~--~~dglIi~Gg~~~ 73 (250)
+|++||.+++.- .--..++.-..++.++|++.|.++..+.+..++.... ..++ ++|.||.+||-+-
T Consensus 2 ~~v~Ii~tGdEl-~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 74 (164)
T 2is8_A 2 FRVGILTVSDKG-FRGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGL 74 (164)
T ss_dssp EEEEEEEECHHH-HHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred cEEEEEEEcCcc-cCCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCC
Confidence 589999876431 1112344455678899999999887665554432110 0123 6899999998654
No 117
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=76.01 E-value=0.5 Score=35.98 Aligned_cols=68 Identities=7% Similarity=-0.051 Sum_probs=38.8
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHH----HhcCCCceEEEEeecCCCCCC-----CCCC-CcCEEEEcCCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAA----FGEEGERWDLFRVVEGDFPDF-----NDLH-KYDGFVISGSPYD 73 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~----l~~~g~~~~~~~~~~~~~~~~-----~~l~-~~dglIi~Gg~~~ 73 (250)
+.+|++||.+++.. ..-..++.-...+.++ |++.|.++..+.+..++.... ..++ ++|.||.+||-+-
T Consensus 4 m~~~v~Ii~~GdEl-~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g~ 81 (167)
T 2g2c_A 4 MHIKSAIIVVSDRI-STGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTGI 81 (167)
T ss_dssp CEEEEEEEEECHHH-HHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred CccEEEEEEECCcc-cCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 44799999876432 1112234455678888 999998877665554432110 0123 4899999998654
No 118
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=75.78 E-value=4 Score=34.44 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=52.6
Q ss_pred cccceEEEEecCCCCh--hHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-C---CCCCCCCCcCEEEEcCCCCCCCCC
Q 025645 4 MEEKRYALFLAAKDSD--YVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-F---PDFNDLHKYDGFVISGSPYDAYGN 77 (250)
Q Consensus 4 ~~~~riail~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~---~~~~~l~~~dglIi~Gg~~~~~~~ 77 (250)
|+.+|++|+. ++... .... ....+.+.|++.|.++.++...... . ......+++|.||+.||-+
T Consensus 22 m~m~~i~vI~-NP~sg~~~~~~----~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDG----- 91 (337)
T 2qv7_A 22 MMRKRARIIY-NPTSGKEQFKR----ELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG----- 91 (337)
T ss_dssp SCCEEEEEEE-CTTSTTSCHHH----HHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHH-----
T ss_pred cccceEEEEE-CCCCCCCchHH----HHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCch-----
Confidence 4335787775 33322 1111 2244678899899887766432211 0 0001124689999999833
Q ss_pred ChhHHHHHHHHHHH--HhcCCcEEEEehHHH-HHHHHcC
Q 025645 78 DNWILKLCFMLQTL--DAMQKKVLGICFGHQ-VLCRALG 113 (250)
Q Consensus 78 ~~~~~~~~~~i~~~--~~~~~PilGIC~G~Q-lla~a~g 113 (250)
.+.+.++.+ ...+.|+.+|=.|-- .+|+.+|
T Consensus 92 -----Tv~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg 125 (337)
T 2qv7_A 92 -----TLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALH 125 (337)
T ss_dssp -----HHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred -----HHHHHHHHHHhCCCCCcEEEecCCcHhHHHHHcC
Confidence 334455555 345788888877644 3555544
No 119
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=75.59 E-value=4.8 Score=32.48 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=43.4
Q ss_pred cceEEEEecC-C---CChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC------CCCCcCEEEEcCCCCCCC
Q 025645 6 EKRYALFLAA-K---DSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN------DLHKYDGFVISGSPYDAY 75 (250)
Q Consensus 6 ~~riail~~~-~---~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~------~l~~~dglIi~Gg~~~~~ 75 (250)
+.+|+++..+ . ..++... +..-+.+.+++.|.++.+..... +..... .-.++||||+.+...+
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~~-- 76 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQ----FLSSMVREAGAVNYFVLPFPFSE-DRSQIDIYRDLIRSGNVDGFVLSSINYN-- 76 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHH----HHHHHHHHHHHTTCEEEECCCCS-STTCCHHHHHHHHTTCCSEEEECSCCTT--
T ss_pred eeEEEEEecccccccCChhHHH----HHHHHHHHHHHcCCEEEEEeCCC-chHHHHHHHHHHHcCCCCEEEEeecCCC--
Confidence 3579999866 4 4444222 23445677788898776543211 111000 0147899999864321
Q ss_pred CCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 76 GNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 76 ~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
+ +.++.+.+.++|++.+.
T Consensus 77 -~--------~~~~~l~~~~iPvV~~~ 94 (287)
T 3bbl_A 77 -D--------PRVQFLLKQKFPFVAFG 94 (287)
T ss_dssp -C--------HHHHHHHHTTCCEEEES
T ss_pred -c--------HHHHHHHhcCCCEEEEC
Confidence 1 12334445678876653
No 120
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=75.39 E-value=3.9 Score=33.12 Aligned_cols=44 Identities=7% Similarity=-0.058 Sum_probs=25.6
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeec
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVE 50 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 50 (250)
++.+||++|..+....-... ...+.+.+.+++.|.+++++.+..
T Consensus 32 ~~~mkIliI~GS~r~~s~t~---~La~~~~~~l~~~g~eve~idL~~ 75 (247)
T 2q62_A 32 THRPRILILYGSLRTVSYSR---LLAEEARRLLEFFGAEVKVFDPSG 75 (247)
T ss_dssp CSCCEEEEEECCCCSSCHHH---HHHHHHHHHHHHTTCEEEECCCTT
T ss_pred CCCCeEEEEEccCCCCCHHH---HHHHHHHHHHhhCCCEEEEEEhhc
Confidence 44579999987654321000 012334555677798888877644
No 121
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=77.04 E-value=0.6 Score=36.60 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=33.9
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEE-EeecC-----C-----CC-----CCCCCCCcCE
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLF-RVVEG-----D-----FP-----DFNDLHKYDG 64 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~~-----~-----~~-----~~~~l~~~dg 64 (250)
|+++++|||++|..+....-.. ....+.+.+.+.+ |.+++++ .+..- + .+ ..+.+..+|+
T Consensus 1 ~~~~~~mkIliI~gS~r~~s~t---~~la~~~~~~~~~-g~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~ 76 (199)
T 3s2y_A 1 MTTTSPLHFVTLLGSLRKASFN---AAVARALPEIAPE-GIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADA 76 (199)
Confidence 6777788999998665421000 0111223344444 7777777 55320 0 00 1124567899
Q ss_pred EEEc
Q 025645 65 FVIS 68 (250)
Q Consensus 65 lIi~ 68 (250)
||+.
T Consensus 77 iIi~ 80 (199)
T 3s2y_A 77 VVIV 80 (199)
Confidence 9886
No 122
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=74.78 E-value=4 Score=33.32 Aligned_cols=82 Identities=11% Similarity=-0.021 Sum_probs=46.6
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC---C--CCCCcCEEEEcCCCCCCCCCChh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF---N--DLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~---~--~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
+..|+++..+...++... +..-+.+.+++.|..+.+.....+..... . .-.++||||+.+...+.
T Consensus 15 s~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~------ 84 (303)
T 3kke_A 15 SGTIGLIVPDVNNAVFAD----MFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFD------ 84 (303)
T ss_dssp --CEEEEESCTTSTTHHH----HHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCC------
T ss_pred CCEEEEEeCCCcChHHHH----HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCc------
Confidence 457999987766655332 23445677888899988765332110000 0 02579999998753321
Q ss_pred HHHHHHHHHHHHhcCCcEEEEe
Q 025645 81 ILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGIC 102 (250)
. +.++.+.+ ++|+.-+.
T Consensus 85 -~---~~~~~l~~-~iPvV~i~ 101 (303)
T 3kke_A 85 -D---DMLAAVLE-GVPAVTIN 101 (303)
T ss_dssp -H---HHHHHHHT-TSCEEEES
T ss_pred -H---HHHHHHhC-CCCEEEEC
Confidence 1 13444555 88877653
No 123
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=73.98 E-value=13 Score=29.37 Aligned_cols=82 Identities=13% Similarity=0.036 Sum_probs=46.9
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC--CC-----CCC-cCEEEEcCCCCCCCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF--ND-----LHK-YDGFVISGSPYDAYGND 78 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~-----l~~-~dglIi~Gg~~~~~~~~ 78 (250)
.+|+++..+...++.... ..-+.+.+++.|.++.+.......-+.. .. -.+ +||||+.+......
T Consensus 1 ~~Ig~i~~~~~~~~~~~~----~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~--- 73 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQV----YLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDL--- 73 (276)
T ss_dssp CEEEEECSCSSSTHHHHH----HHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTT---
T ss_pred CeEEEEeCCCCChHHHHH----HHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHH---
Confidence 379999877666654332 3445667778898876654211110000 00 135 99999987532211
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEE
Q 025645 79 NWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 79 ~~~~~~~~~i~~~~~~~~PilGI 101 (250)
.+.++.+.+.++|++-+
T Consensus 74 ------~~~~~~~~~~~ipvV~~ 90 (276)
T 3ksm_A 74 ------TPSVAQYRARNIPVLVV 90 (276)
T ss_dssp ------HHHHHHHHHTTCCEEEE
T ss_pred ------HHHHHHHHHCCCcEEEE
Confidence 23445666778998766
No 124
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=73.71 E-value=2.5 Score=34.27 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=38.2
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CC--CCCCcCEEEEcCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FN--DLHKYDGFVISGSP 71 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~--~l~~~dglIi~Gg~ 71 (250)
++.+|+++..+...++... +..-+.+.+++.|.++.++....+.... .+ .-.++||||+.+..
T Consensus 7 ~~~~Igvv~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAE----VASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp CCCEEEEEESCTTSHHHHH----HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred CCcEEEEEECCCcchHHHH----HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4568999987766665433 2344567788889888776532210000 00 01478999998764
No 125
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=73.44 E-value=12 Score=30.04 Aligned_cols=83 Identities=10% Similarity=0.078 Sum_probs=48.4
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC--CC-----CCCcCEEEEcCCCCCCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF--ND-----LHKYDGFVISGSPYDAYGN 77 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~-----l~~~dglIi~Gg~~~~~~~ 77 (250)
++.+|+++..+...++... +..-+.+.+++.|.++.++......-+.. .. -.++||||+.+...+....
T Consensus 4 ~~~~Igvi~~~~~~~~~~~----~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~ 79 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLS----VNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEH 79 (304)
T ss_dssp -CCEEEEEESCSCSHHHHH----HHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTT
T ss_pred CCcEEEEEeCCCCCcHHHH----HHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHH
Confidence 4578999988776665332 23445677788898887765332000000 00 1368999999754332111
Q ss_pred ChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 78 DNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 78 ~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
.++.+. .++|++-+
T Consensus 80 ---------~~~~~~-~~iPvV~~ 93 (304)
T 3o1i_D 80 ---------NLKSWV-GNTPVFAT 93 (304)
T ss_dssp ---------THHHHT-TTSCEEEC
T ss_pred ---------HHHHHc-CCCCEEEe
Confidence 234555 78998877
No 126
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=73.37 E-value=15 Score=29.46 Aligned_cols=83 Identities=8% Similarity=-0.038 Sum_probs=45.3
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CCC--CCCcCEEEEcCCCCCCCCCCh
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FND--LHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~~--l~~~dglIi~Gg~~~~~~~~~ 79 (250)
++.+|+|+..+...++... +..-+.+.+++.|.++.+.....+.... ... -.++||||+.+...+
T Consensus 15 ~s~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~------ 84 (289)
T 2fep_A 15 KTTTVGVIIPDISSIFYSE----LARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNIT------ 84 (289)
T ss_dssp -CCEEEEEESCTTSHHHHH----HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC------
T ss_pred CCCeEEEEeCCCCCchHHH----HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC------
Confidence 3467999987766655332 2344567788889887765422110000 000 157899999875221
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEe
Q 025645 80 WILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGIC 102 (250)
. +.++.+.+.++|++-+.
T Consensus 85 --~---~~~~~l~~~~iPvV~~~ 102 (289)
T 2fep_A 85 --D---EHVAEFKRSPVPIVLAA 102 (289)
T ss_dssp --H---HHHHHHHHSSSCEEEES
T ss_pred --H---HHHHHHHhcCCCEEEEc
Confidence 1 12334445677776553
No 127
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=73.19 E-value=5.6 Score=32.15 Aligned_cols=83 Identities=13% Similarity=0.045 Sum_probs=45.5
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC---C-----CCCcCEEEEcCCCCCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN---D-----LHKYDGFVISGSPYDAYG 76 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~---~-----l~~~dglIi~Gg~~~~~~ 76 (250)
++.+|+++..+...++... +..-+.+.+++.|.++.+.....+...... . -.++||||+.+...+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--- 79 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGT----ILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH--- 79 (290)
T ss_dssp -CCEEEEECSCSCSHHHHH----HHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC---
T ss_pred CCCeEEEEeCCCCCchHHH----HHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC---
Confidence 3467999987665654332 234456778888988766543211100001 1 147899999875321
Q ss_pred CChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 77 NDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 77 ~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
.. .++.+.+.++|++-+.
T Consensus 80 -----~~---~~~~l~~~~iPvV~~~ 97 (290)
T 2rgy_A 80 -----DE---DLDELHRMHPKMVFLN 97 (290)
T ss_dssp -----HH---HHHHHHHHCSSEEEES
T ss_pred -----HH---HHHHHhhcCCCEEEEc
Confidence 11 2333444578887664
No 128
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=73.00 E-value=6.5 Score=28.46 Aligned_cols=55 Identities=9% Similarity=0.191 Sum_probs=33.3
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCC-CcCEEEEcC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLH-KYDGFVISG 69 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~-~~dglIi~G 69 (250)
+||+|+-.+.. .... .+...+.+.+++.|.+++++.+...+ ..++. ++|+||+.-
T Consensus 2 ~ki~I~y~S~t-GnT~----~~A~~ia~~l~~~g~~v~~~~~~~~~---~~~l~~~~d~ii~g~ 57 (148)
T 3f6r_A 2 SKVLIVFGSST-GNTE----SIAQKLEELIAAGGHEVTLLNAADAS---AENLADGYDAVLFGC 57 (148)
T ss_dssp CEEEEEEECSS-SHHH----HHHHHHHHHHHTTTCEEEEEETTTBC---CTTTTTTCSEEEEEE
T ss_pred CeEEEEEECCC-chHH----HHHHHHHHHHHhCCCeEEEEehhhCC---HhHhcccCCEEEEEe
Confidence 47888764432 1111 12344666778889888887754322 23566 899888874
No 129
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=71.83 E-value=4.7 Score=32.66 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=37.1
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSP 71 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~ 71 (250)
++.+|+|+. +...+++.. +..-+.+.+++.|.++.+.....+.. ... .-.++||||+.+..
T Consensus 11 ~~~~Igvi~-~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~-~~~~~~~l~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 11 SSRLLGVVF-ELQQPFHGD----LVEQIYAAATRRGYDVMLSAVAPSRA-EKVAVQALMRERCEAAILLGTR 76 (289)
T ss_dssp --CEEEEEE-ETTCHHHHH----HHHHHHHHHHHTTCEEEEEEEBTTBC-HHHHHHHHTTTTEEEEEEETCC
T ss_pred CCCEEEEEE-ecCCchHHH----HHHHHHHHHHHCCCEEEEEeCCCCHH-HHHHHHHHHhCCCCEEEEECCC
Confidence 345799998 665655332 33446678888899888776443211 100 11578999999753
No 130
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=71.34 E-value=18 Score=28.71 Aligned_cols=82 Identities=9% Similarity=0.050 Sum_probs=44.8
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC-----CCCCCCCcCEEEEcCCCCCCCCCChhH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP-----DFNDLHKYDGFVISGSPYDAYGNDNWI 81 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-----~~~~l~~~dglIi~Gg~~~~~~~~~~~ 81 (250)
++|+++..+...+++.. ...-+.+.+++.|.++.+.....+... ..-.-.++||||+.+...+. .
T Consensus 2 ~~Igvi~~~~~~~f~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~------~ 71 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVS----LKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDA------V 71 (271)
T ss_dssp CEEEEEESCSSSHHHHH----HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTT------T
T ss_pred cEEEEEecCCCCHHHHH----HHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHH------H
Confidence 57999987766665332 234456677788988766542111000 00012469999997642111 0
Q ss_pred HHHHHHHHHHHhcCCcEEEE
Q 025645 82 LKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 82 ~~~~~~i~~~~~~~~PilGI 101 (250)
...++.+.+.++|+.-+
T Consensus 72 ---~~~~~~~~~~~iPvV~i 88 (271)
T 2dri_A 72 ---GNAVKMANQANIPVITL 88 (271)
T ss_dssp ---HHHHHHHHHTTCCEEEE
T ss_pred ---HHHHHHHHHCCCcEEEe
Confidence 12344555667887654
No 131
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=71.10 E-value=8 Score=30.75 Aligned_cols=80 Identities=10% Similarity=0.077 Sum_probs=41.1
Q ss_pred eEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CCC--CCCcCEEEEcCCCCCCCCCChhHH
Q 025645 8 RYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FND--LHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 8 riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~~--l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
.|+++..+...++... +..-+.+.+++.|.++.+.....+.... ... -.++||||+.+...+.
T Consensus 1 ~Igvi~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------- 68 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRR----LVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLTE-------- 68 (276)
T ss_dssp CEEEEECCSCCHHHHH----HHHHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC---------
T ss_pred CEEEEECCCCCHHHHH----HHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH--------
Confidence 3788876665655332 3344567788889877654322111000 011 1468999998753221
Q ss_pred HHHHHHHHHHhcCCcEEEEe
Q 025645 83 KLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 83 ~~~~~i~~~~~~~~PilGIC 102 (250)
..++.+.+.++|++-+.
T Consensus 69 ---~~~~~~~~~~iPvV~~~ 85 (276)
T 2h0a_A 69 ---RFEEGRLPTERPVVLVD 85 (276)
T ss_dssp --------CCSCSSCEEEES
T ss_pred ---HHHHHHhhcCCCEEEEe
Confidence 12233344577776653
No 132
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=71.08 E-value=13 Score=29.73 Aligned_cols=62 Identities=6% Similarity=0.139 Sum_probs=36.8
Q ss_pred ccceEEEEec-CCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC---C--CCCCcCEEEEcCC
Q 025645 5 EEKRYALFLA-AKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF---N--DLHKYDGFVISGS 70 (250)
Q Consensus 5 ~~~riail~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~---~--~l~~~dglIi~Gg 70 (250)
++.+|+|+.. +...++... +..-+.+.+++.|..+.++....+..... . .-.++||||+.+.
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISR----FLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHH----HHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSC
T ss_pred CCceEEEEeccccchHHHHH----HHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecC
Confidence 3567999987 444554332 33445677888899987765432211110 1 1247899999864
No 133
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=70.03 E-value=4.5 Score=33.68 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=44.9
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
...|+++..+...+++.. +..-+.+.+++.|..+.+.....+...... .-.++||||+.+...+.
T Consensus 62 ~~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~------ 131 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLE----TLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAE------ 131 (339)
T ss_dssp -CEEEEEESCSTTCTTHH----HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCT------
T ss_pred CCEEEEEeCCCCCHHHHH----HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCH------
Confidence 456999987655554332 334456778888988876543211000000 01579999998753221
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
..++.+.+.++|+.-+
T Consensus 132 -----~~~~~l~~~~iPvV~~ 147 (339)
T 3h5o_A 132 -----PFERILSQHALPVVYM 147 (339)
T ss_dssp -----THHHHHHHTTCCEEEE
T ss_pred -----HHHHHHhcCCCCEEEE
Confidence 1223444567887665
No 134
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=69.77 E-value=9.5 Score=30.57 Aligned_cols=82 Identities=11% Similarity=0.018 Sum_probs=44.9
Q ss_pred ccceEEEEecC-----CCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CC--CCCCcCEEEEcCCCCCC
Q 025645 5 EEKRYALFLAA-----KDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FN--DLHKYDGFVISGSPYDA 74 (250)
Q Consensus 5 ~~~riail~~~-----~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~--~l~~~dglIi~Gg~~~~ 74 (250)
++.+|+++..+ ...++... +..-+.+.+++.|.++.+.....+.... .. .-.++||||+.+...+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~ 82 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPE----VIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND 82 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHH----HHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC
T ss_pred CCCEEEEEecCCccccccCHHHHH----HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh
Confidence 45689999877 45554332 2344567788889877654321100000 00 01579999998753221
Q ss_pred CCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 75 YGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 75 ~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
+.++.+.+.++|++-+
T Consensus 83 -----------~~~~~l~~~~iPvV~~ 98 (292)
T 3k4h_A 83 -----------RIIQYLHEQNFPFVLI 98 (292)
T ss_dssp -----------HHHHHHHHTTCCEEEE
T ss_pred -----------HHHHHHHHCCCCEEEE
Confidence 1334455567777654
No 135
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=69.39 E-value=24 Score=28.15 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=43.9
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC--CC-----CCCcCEEEEcCCCCCCCCCCh
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF--ND-----LHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~-----l~~~dglIi~Gg~~~~~~~~~ 79 (250)
.+|+++..+...++... ...-+.+.+++.|.++.+..... + +.. .. -.++||||+.+...+.
T Consensus 2 ~~Igvi~~~~~~~f~~~----~~~gi~~~~~~~g~~~~~~~~~~-~-~~~~~~~i~~l~~~~vdgiIi~~~~~~~----- 70 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVT----LKNGAEEKAKELGYKIIVEDSQN-D-SSKELSNVEDLIQQKVDVLLINPVDSDA----- 70 (283)
T ss_dssp CEEEEEESCSSSHHHHH----HHHHHHHHHHHHTCEEEEEECTT-C-HHHHHHHHHHHHHTTCSEEEECCSSTTT-----
T ss_pred eEEEEEecCCCCHHHHH----HHHHHHHHHHhcCcEEEEecCCC-C-HHHHHHHHHHHHHcCCCEEEEeCCchhh-----
Confidence 47999987766665332 23345567777898876654211 1 000 00 1468999997532111
Q ss_pred hHHHHHHHHHHHHhcCCcEEEE
Q 025645 80 WILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGI 101 (250)
..+.++.+.+.++|++-+
T Consensus 71 ----~~~~~~~~~~~~iPvV~~ 88 (283)
T 2ioy_A 71 ----VVTAIKEANSKNIPVITI 88 (283)
T ss_dssp ----THHHHHHHHHTTCCEEEE
T ss_pred ----hHHHHHHHHHCCCeEEEe
Confidence 012334455668887654
No 136
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=68.90 E-value=27 Score=28.21 Aligned_cols=82 Identities=10% Similarity=0.039 Sum_probs=45.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC----CCC--CCCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD----FND--LHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~----~~~--l~~~dglIi~Gg~~~~~~~~~ 79 (250)
+.+|+++......++.... ..-+.+.+++.|.++.+..... +... ... -.++||||+.+...+..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~----~~gi~~~a~~~g~~l~~~~~~~-~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~---- 72 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAE----TNVAKSEAEKRGITLKIADGQQ-KQENQIKAVRSFVAQGVDAIFIAPVVATGW---- 72 (306)
T ss_dssp CCEEEEEECCCCSHHHHHH----HHHHHHHHHHHTCEEEEEECTT-CHHHHHHHHHHHHHHTCSEEEECCSSSSSC----
T ss_pred CeEEEEEeCCCCCHHHHHH----HHHHHHHHHHcCCEEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEeCCChhhH----
Confidence 4689999877666543322 2335567778898877654211 1000 000 14689999986532211
Q ss_pred hHHHHHHHHHHHHhcCCcEEEE
Q 025645 80 WILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGI 101 (250)
. +.++.+.+.++|++-+
T Consensus 73 --~---~~~~~~~~~~iPvV~~ 89 (306)
T 2vk2_A 73 --E---PVLKEAKDAEIPVFLL 89 (306)
T ss_dssp --H---HHHHHHHHTTCCEEEE
T ss_pred --H---HHHHHHHHCCCCEEEe
Confidence 1 1334445568887654
No 137
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=68.60 E-value=17 Score=29.19 Aligned_cols=83 Identities=6% Similarity=-0.006 Sum_probs=47.3
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCC-ceEEEEeecCCCCC----CCC--CCCcCEEEEcCCCCCCCCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGE-RWDLFRVVEGDFPD----FND--LHKYDGFVISGSPYDAYGND 78 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~----~~~--l~~~dglIi~Gg~~~~~~~~ 78 (250)
+.+|+++..+...++... +..-+.+.+++.|. ++.+..... +... ... -.++||||+.+...+
T Consensus 2 s~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~vdgiii~~~~~~----- 71 (309)
T 2fvy_A 2 DTRIGVTIYKYDDNFMSV----VRKAIEQDAKAAPDVQLLMNDSQN-DQSKQNDQIDVLLAKGVKALAINLVDPA----- 71 (309)
T ss_dssp CEEEEEEESCTTSHHHHH----HHHHHHHHHHTCTTEEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCSSGG-----
T ss_pred CcEEEEEeccCCcHHHHH----HHHHHHHHHHhcCCeEEEEecCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCcc-----
Confidence 368999987766655332 23445677888897 766554211 1000 000 157899999764221
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 79 NWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 79 ~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
.....++.+.+.++|++-+.
T Consensus 72 ----~~~~~~~~~~~~~iPvV~~~ 91 (309)
T 2fvy_A 72 ----AAGTVIEKARGQNVPVVFFN 91 (309)
T ss_dssp ----GHHHHHHHHHTTTCCEEEES
T ss_pred ----hhHHHHHHHHHCCCcEEEec
Confidence 11234555666789988664
No 138
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=68.24 E-value=9.5 Score=27.45 Aligned_cols=55 Identities=7% Similarity=0.063 Sum_probs=32.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCC-cCEEEEcC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHK-YDGFVISG 69 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~-~dglIi~G 69 (250)
|||.|+-.+.. ..-. .....+.+.+++.|.+++++.+...+ ..++.+ +|.||+.-
T Consensus 1 mki~iiy~S~~-Gnt~----~~a~~i~~~l~~~g~~v~~~~~~~~~---~~~l~~~~d~ii~~~ 56 (147)
T 1f4p_A 1 PKALIVYGSTT-GNTE----YTAETIARELADAGYEVDSRDAASVE---AGGLFEGFDLVLLGC 56 (147)
T ss_dssp CEEEEEEECSS-SHHH----HHHHHHHHHHHHHTCEEEEEEGGGCC---STTTTTTCSEEEEEE
T ss_pred CeEEEEEECCc-CHHH----HHHHHHHHHHHhcCCeeEEEehhhCC---HHHhcCcCCEEEEEe
Confidence 46777764432 1111 12234556667778888887765432 235777 99988863
No 139
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=68.24 E-value=0.56 Score=26.33 Aligned_cols=17 Identities=41% Similarity=0.837 Sum_probs=13.2
Q ss_pred cEEEEehHHHHHHHHcC
Q 025645 97 KVLGICFGHQVLCRALG 113 (250)
Q Consensus 97 PilGIC~G~Qlla~a~g 113 (250)
-..|-|+|.|++..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T 1ehs_A 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SSCCTTTTTHHHHTTTT
T ss_pred CccccccchhHhhhccc
Confidence 46788999999976644
No 140
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=67.86 E-value=5 Score=29.85 Aligned_cols=97 Identities=10% Similarity=0.037 Sum_probs=57.7
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-------CCC--CCcCEEEEcCCCCCCC-
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-------NDL--HKYDGFVISGSPYDAY- 75 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-------~~l--~~~dglIi~Gg~~~~~- 75 (250)
.+||+++.++.....-......|...+.+.|.+.+..+.++...-+..... ..+ .++|.|+|..|..+..
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~ 81 (185)
T 3hp4_A 2 DNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQYEPTHVLIELGANDGLR 81 (185)
T ss_dssp CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECCHHHHHT
T ss_pred CCeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhhcCCCEEEEEeecccCCC
Confidence 368888886654321111223678888888988888887775433221110 011 2679999997754431
Q ss_pred --CCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 76 --GNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 76 --~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
....+...+.++++.+.+.+.+++=++
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~vvl~~ 110 (185)
T 3hp4_A 82 GFPVKKMQTNLTALVKKSQAANAMTALME 110 (185)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 223456677788888877766665444
No 141
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=67.73 E-value=9.7 Score=28.96 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=20.4
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhc---CCCceEEEEee
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE---EGERWDLFRVV 49 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~~~~~~~~ 49 (250)
.|||+|+..+.... +.+..+++.+.+ .|.+++++.+.
T Consensus 6 ~Mkilii~gS~r~~-------g~t~~la~~i~~~l~~g~~v~~~dl~ 45 (193)
T 1rtt_A 6 DIKVLGISGSLRSG-------SYNSAALQEAIGLVPPGMSIELADIS 45 (193)
T ss_dssp -CEEEEEESCCSTT-------CHHHHHHHHHHTTCCTTCEEEECCCT
T ss_pred CceEEEEECCCCCC-------ChHHHHHHHHHHhccCCCeEEEEeHH
Confidence 46899998765421 234444444322 46777776654
No 142
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=67.45 E-value=6.1 Score=31.57 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=41.9
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC---CCCCCCCcCEEEEcCCCCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP---DFNDLHKYDGFVISGSPYDAY 75 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~---~~~~l~~~dglIi~Gg~~~~~ 75 (250)
||||||+.+.....+...-.+-+--+.+.+.+.|.+++++....+-+. ++.+...||-+++..+..+-+
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~vd~is~k~~iy~~~fd~vd~n~ydr~~vvn~s~nf~ 72 (351)
T 1jg7_A 1 MKIAIINMGNNVINFKTVPSSETIYLFKVISEMGLNVDIISLKNGVYTKSFDEVDVNDYDRLIVVNSSINFF 72 (351)
T ss_dssp CCEEEEESSSCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEESSCCSSEEEGGGSCGGGCSEEEEECCCCCCC
T ss_pred CceEEEecCCccccceecCccceeeHHHHHHHcCCCeeEEEeccceeeeecccCCccccceEEEEeceeecc
Confidence 589999977553221110001112245788999999999886554321 233567899999987655444
No 143
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=67.42 E-value=14 Score=28.02 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=32.6
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhc-CCCceEEEEeecCCCCCCCCCCCcCEEEEcC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE-EGERWDLFRVVEGDFPDFNDLHKYDGFVISG 69 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~l~~~dglIi~G 69 (250)
+||+|+..+... .-. ...+.+.+.+++ .|.+++++.+...+ ..++.++|+||+.-
T Consensus 5 ~kiliiy~S~~G-nT~----~~a~~i~~~l~~~~g~~v~~~~l~~~~---~~~l~~aD~ii~gs 60 (188)
T 2ark_A 5 GKVLVIYDTRTG-NTK----KMAELVAEGARSLEGTEVRLKHVDEAT---KEDVLWADGLAVGS 60 (188)
T ss_dssp EEEEEEECCSSS-HHH----HHHHHHHHHHHTSTTEEEEEEETTTCC---HHHHHHCSEEEEEE
T ss_pred CEEEEEEECCCc-HHH----HHHHHHHHHHhhcCCCeEEEEEhhhCC---HHHHHhCCEEEEEe
Confidence 588888755322 111 122345566777 78888877754321 23466789998863
No 144
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=66.57 E-value=5.7 Score=33.08 Aligned_cols=81 Identities=11% Similarity=-0.057 Sum_probs=46.6
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCCCCCCCCCChh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
..+|+++..+...+++.. +..-+.+.+++.|..+.+.....+...... .-.++||||+.+...+
T Consensus 68 ~~~Ig~i~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~------- 136 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPE----VLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHS------- 136 (344)
T ss_dssp CSEEEEEESCSSSSSHHH----HHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC-------
T ss_pred CCEEEEEeCCCCcHHHHH----HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCC-------
Confidence 457999987665554332 234466788888988866543211000000 0146899999864321
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
. ..++.+.+.++|+.-+
T Consensus 137 -~---~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 137 -E---AARAMLDAAGIPVVEI 153 (344)
T ss_dssp -H---HHHHHHHHCSSCEEEE
T ss_pred -H---HHHHHHHhCCCCEEEE
Confidence 1 2344555678888766
No 145
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=66.26 E-value=15 Score=29.12 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=45.2
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CCC--CCCcCEEEEcCCCCCCCCCCh
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FND--LHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~~--l~~~dglIi~Gg~~~~~~~~~ 79 (250)
+..+|+++..+...++... +..-+.+.+++.|..+.++....+.... ... -.++||||+.+. +
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~--~------ 74 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTL----IARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF--N------ 74 (277)
T ss_dssp ---CEEEEESCTTSHHHHH----HHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG--G------
T ss_pred CCCEEEEEECCCCCHHHHH----HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC--C------
Confidence 3467999987766665432 3344567788889988776532210000 000 157999999871 1
Q ss_pred hHHHHHHHHH-HHHhcCCcEEEE
Q 025645 80 WILKLCFMLQ-TLDAMQKKVLGI 101 (250)
Q Consensus 80 ~~~~~~~~i~-~~~~~~~PilGI 101 (250)
.. .++ .+.+.++|++-+
T Consensus 75 --~~---~~~~~l~~~~iPvV~~ 92 (277)
T 3e61_A 75 --EN---IIENTLTDHHIPFVFI 92 (277)
T ss_dssp --HH---HHHHHHHHC-CCEEEG
T ss_pred --hH---HHHHHHHcCCCCEEEE
Confidence 11 245 566678888765
No 146
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=66.10 E-value=0.85 Score=37.24 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=45.3
Q ss_pred HHHHHHhcCCCceEEEEee--cCCCCCC-CCCCCcCEEEEcCCCCCCCC--CChhH-----HHHHHHHHHHHhcCCcEEE
Q 025645 31 VFVAAFGEEGERWDLFRVV--EGDFPDF-NDLHKYDGFVISGSPYDAYG--NDNWI-----LKLCFMLQTLDAMQKKVLG 100 (250)
Q Consensus 31 ~~~~~l~~~g~~~~~~~~~--~~~~~~~-~~l~~~dglIi~Gg~~~~~~--~~~~~-----~~~~~~i~~~~~~~~PilG 100 (250)
.+.++|+..+.+++.+... ...+|+. +.|++||.||+.+.+..... ...|. ....+.++++.+.|..+++
T Consensus 44 ~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GGgll~ 123 (256)
T 2gk3_A 44 WLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLM 123 (256)
T ss_dssp HHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhcCceEEEEecccchhhCCcChhHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCCEEEE
Confidence 3677888888887776321 1144532 45789999999975432111 00111 3456777888888999999
Q ss_pred Ee
Q 025645 101 IC 102 (250)
Q Consensus 101 IC 102 (250)
|.
T Consensus 124 ig 125 (256)
T 2gk3_A 124 IG 125 (256)
T ss_dssp EC
T ss_pred EC
Confidence 93
No 147
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=65.95 E-value=2.3 Score=32.21 Aligned_cols=68 Identities=12% Similarity=-0.040 Sum_probs=38.3
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcC-----CCceEEEEeecCCCCCC-----CCC--CCcCEEEEcCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEE-----GERWDLFRVVEGDFPDF-----NDL--HKYDGFVISGSPY 72 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~-----g~~~~~~~~~~~~~~~~-----~~l--~~~dglIi~Gg~~ 72 (250)
+++|++||.+++.. ..-..++.-...+.+.+++. |.++..+.+..++.... ..+ .++|.||.+||-+
T Consensus 4 ~~~rv~IistGde~-~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 82 (167)
T 1uuy_A 4 PEYKVAILTVSDTV-SAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTG 82 (167)
T ss_dssp CSEEEEEEEECHHH-HTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCcEEEEEEECCcc-cCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 45799999876421 00011222234566777777 88777665554432110 011 3689999999865
Q ss_pred C
Q 025645 73 D 73 (250)
Q Consensus 73 ~ 73 (250)
-
T Consensus 83 ~ 83 (167)
T 1uuy_A 83 F 83 (167)
T ss_dssp S
T ss_pred C
Confidence 3
No 148
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=65.77 E-value=1.5 Score=34.12 Aligned_cols=68 Identities=6% Similarity=0.006 Sum_probs=39.6
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhc---CCCceEEEEeecCCCCCC-----CCCC--CcCEEEEcCCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE---EGERWDLFRVVEGDFPDF-----NDLH--KYDGFVISGSPYD 73 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~~~~~-----~~l~--~~dglIi~Gg~~~ 73 (250)
+++|++||.+++.--. -..++....++..+|++ .|.++....+..++.... ..++ ++|.||.+||-+-
T Consensus 13 ~~~rv~IistGdEl~~-g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttGGtg~ 90 (189)
T 1jlj_A 13 HQIRVGVLTVSDSCFR-NLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGF 90 (189)
T ss_dssp CCCEEEEEEECHHHHT-TSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCCEEEEEEECCccCC-CcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcCCCCC
Confidence 3578999987643100 01122233567788888 788877665554432110 0122 6899999998654
No 149
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=65.12 E-value=3.1 Score=33.87 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=48.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-CC-----CCCCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-FN-----DLHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~-----~l~~~dglIi~Gg~~~~~~~~~ 79 (250)
+.+|+++..+...++.... ..-+.+.+++.|.++.++.. .+... .. .-.++||||+.+...+
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~----~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~------ 69 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTE----WKFADKAGKDLGFEVIKIAV--PDGEKTLNAIDSLAASGAKGFVICTPDPK------ 69 (306)
T ss_dssp CEEEEEEESCTTSHHHHHH----HHHHHHHHHHHTEEEEEEEC--CSHHHHHHHHHHHHHTTCCEEEEECSCGG------
T ss_pred CeEEEEEeCCCCchHHHHH----HHHHHHHHHHcCCEEEEeCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCch------
Confidence 4689999887777654432 34456677778887765542 11000 00 0146899999874221
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEe
Q 025645 80 WILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGIC 102 (250)
.....++.+.+.++|++-+-
T Consensus 70 ---~~~~~~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 70 ---LGSAIVAKARGYDMKVIAVD 89 (306)
T ss_dssp ---GHHHHHHHHHHTTCEEEEES
T ss_pred ---hhHHHHHHHHHCCCcEEEeC
Confidence 12234566667788887553
No 150
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=63.65 E-value=5.9 Score=33.20 Aligned_cols=81 Identities=10% Similarity=-0.011 Sum_probs=47.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCC-----CCCcCEEEEcCCCCCCCCCChh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFND-----LHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-----l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
...|+++..+...+++.. +..-+.+.+++.|..+.+.....+....... -.++||||+.+...+
T Consensus 70 ~~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~------- 138 (355)
T 3e3m_A 70 SGFVGLLLPSLNNLHFAQ----TAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT------- 138 (355)
T ss_dssp -CEEEEEESCSBCHHHHH----HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC-------
T ss_pred CCEEEEEeCCCCchHHHH----HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-------
Confidence 356999987766665332 3344667888889988766432110000000 147899999865321
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
. ..++.+.+.++|+.-+
T Consensus 139 -~---~~~~~l~~~~iPvV~i 155 (355)
T 3e3m_A 139 -E---QTIRLLQRASIPIVEI 155 (355)
T ss_dssp -H---HHHHHHHHCCSCEEEE
T ss_pred -H---HHHHHHHhCCCCEEEE
Confidence 1 2344555678888766
No 151
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=63.53 E-value=12 Score=30.79 Aligned_cols=83 Identities=19% Similarity=0.116 Sum_probs=45.3
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC----CCC--CCCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD----FND--LHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~----~~~--l~~~dglIi~Gg~~~~~~~~~ 79 (250)
.++|+++......+++.. ...-+.+.+++.|.++.+......+... .+. -.++||||+.+...+.
T Consensus 3 ~~~Igvi~~~~~~~~~~~----~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~----- 73 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFTS----GGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDG----- 73 (316)
T ss_dssp CCEEEEECSSSSSHHHHH----HHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSST-----
T ss_pred CCEEEEEeCCCCChHHHH----HHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH-----
Confidence 468999987666665432 2334566777788776543111111000 000 1578999998642221
Q ss_pred hHHHHHHHHHHHHhcCCcEEEE
Q 025645 80 WILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGI 101 (250)
+...++.+.+.++|++-+
T Consensus 74 ----~~~~~~~a~~~gipvV~~ 91 (316)
T 1tjy_A 74 ----LCPALKRAMQRGVKILTW 91 (316)
T ss_dssp ----THHHHHHHHHTTCEEEEE
T ss_pred ----HHHHHHHHHHCcCEEEEe
Confidence 122445566678888765
No 152
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=63.52 E-value=2.6 Score=36.75 Aligned_cols=68 Identities=10% Similarity=0.006 Sum_probs=40.5
Q ss_pred ccceEEEEecCCCCh-h-------HHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----CCCCCcCEEEEcCCC
Q 025645 5 EEKRYALFLAAKDSD-Y-------VLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----NDLHKYDGFVISGSP 71 (250)
Q Consensus 5 ~~~riail~~~~~~~-~-------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~l~~~dglIi~Gg~ 71 (250)
+++|++||.+++.-- . .-..|++...++..+|++.|.++..+.+..++.... ..++++|.||.+||.
T Consensus 181 ~~prv~IistGdEl~~~~g~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG~ 260 (396)
T 1wu2_A 181 VKPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGS 260 (396)
T ss_dssp CCCEEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC---
T ss_pred CCCEEEEEEcCcccccCCCCcccCCCcEecchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 356899998774421 0 123455666788899999999887666554432110 012468999999986
Q ss_pred C
Q 025645 72 Y 72 (250)
Q Consensus 72 ~ 72 (250)
+
T Consensus 261 s 261 (396)
T 1wu2_A 261 A 261 (396)
T ss_dssp -
T ss_pred C
Confidence 4
No 153
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=63.29 E-value=30 Score=23.96 Aligned_cols=80 Identities=11% Similarity=0.008 Sum_probs=42.8
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
.+||.++ |..+...-. ......+..++.|.++++.....++.. +.++++|.|+++ |.-.| .+.
T Consensus 6 ~mkIlL~-C~aGmSTsl-----lv~km~~~a~~~gi~v~i~a~~~~~~~--~~~~~~DvvLLg--PQV~y-------~~~ 68 (108)
T 3nbm_A 6 ELKVLVL-CAGSGTSAQ-----LANAINEGANLTEVRVIANSGAYGAHY--DIMGVYDLIILA--PQVRS-------YYR 68 (108)
T ss_dssp CEEEEEE-ESSSSHHHH-----HHHHHHHHHHHHTCSEEEEEEETTSCT--TTGGGCSEEEEC--GGGGG-------GHH
T ss_pred CceEEEE-CCCCCCHHH-----HHHHHHHHHHHCCCceEEEEcchHHHH--hhccCCCEEEEC--hHHHH-------HHH
Confidence 4676666 555432100 112344566777999887654444433 345789988884 43332 111
Q ss_pred HHHHHHHhcCCcEEEEe
Q 025645 86 FMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC 102 (250)
++-+.+...++||.-|=
T Consensus 69 ~ik~~~~~~~ipV~vI~ 85 (108)
T 3nbm_A 69 EMKVDAERLGIQIVATR 85 (108)
T ss_dssp HHHHHHTTTTCEEEECC
T ss_pred HHHHHhhhcCCcEEEeC
Confidence 22223334578987664
No 154
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=62.87 E-value=31 Score=28.30 Aligned_cols=61 Identities=15% Similarity=0.042 Sum_probs=35.2
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CCC--CCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FND--LHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~~--l~~~dglIi~Gg 70 (250)
..+|+++..+...+++.. +..-+.+.+++.|..+.+.....+.... ... -.++||||+.+.
T Consensus 63 ~~~Ig~i~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 63 TTTVGVILPTITSTYFAA----ITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp CCEEEEEESCTTCHHHHH----HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CCEEEEEeCCCCCcHHHH----HHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 457999987655554332 3344567778889887765422110000 000 157899999875
No 155
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=62.75 E-value=3.9 Score=32.93 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=43.9
Q ss_pred ccceEEEEecCCC--ChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----CC--CCCcCEEEEcCCCCCCC
Q 025645 5 EEKRYALFLAAKD--SDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----ND--LHKYDGFVISGSPYDAY 75 (250)
Q Consensus 5 ~~~riail~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~--l~~~dglIi~Gg~~~~~ 75 (250)
++.+|+++..+.. .++... +..-+.+.+++.|.++.++......-+.. .. -.++||||+.+...+.
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~- 78 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSV----LVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEK- 78 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHH----HHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTT-
T ss_pred CCcEEEEEeCCCCCCchHHHH----HHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHH-
Confidence 3468999987655 554332 23345667777888776543210110000 00 1478999998753221
Q ss_pred CCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 76 GNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 76 ~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
..+.++.+.+.++|++.+
T Consensus 79 --------~~~~~~~~~~~~iPvV~~ 96 (289)
T 3brs_A 79 --------TYDAAKEIKDAGIKLIVI 96 (289)
T ss_dssp --------THHHHTTTGGGTCEEEEE
T ss_pred --------hHHHHHHHHHCCCcEEEE
Confidence 012234444567776654
No 156
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=62.53 E-value=6.6 Score=31.62 Aligned_cols=62 Identities=8% Similarity=0.023 Sum_probs=36.0
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC---CCC--CCCCcCEEEEcCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP---DFN--DLHKYDGFVISGS 70 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~---~~~--~l~~~dglIi~Gg 70 (250)
++.+|+++..+...++... +..-+.+.+++.|.++.+.....+... ..+ .-.++||||+.+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAA----VVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp CCCEEEEEESCTTSHHHHH----HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCCEEEEEeCCCCCchHHH----HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3568999987666655332 234456778888988776542211000 000 0157899999864
No 157
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=62.25 E-value=4.7 Score=32.15 Aligned_cols=82 Identities=20% Similarity=0.115 Sum_probs=44.7
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CC--CCCCcCEEEEcCCCCCCCCCChh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FN--DLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~--~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
+.+|+++..+...++... +..-+.+.+++.|.++.+.....+.... .. .-.++||||+.+...+
T Consensus 3 s~~Ig~i~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~------- 71 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAH----FLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS------- 71 (275)
T ss_dssp -CEEEEEESCSSCHHHHH----HHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-------
T ss_pred ceEEEEEeCCCccccHHH----HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-------
Confidence 467999987665554332 2344567788889877655422110000 00 1246899999875321
Q ss_pred HHHHHHHHHHHHhcCCcEEEEe
Q 025645 81 ILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGIC 102 (250)
. +.++.+.+.++|++-+.
T Consensus 72 -~---~~~~~l~~~~iPvV~~~ 89 (275)
T 3d8u_A 72 -Q---RTHQLLEASNTPVLEIA 89 (275)
T ss_dssp -H---HHHHHHHHHTCCEEEES
T ss_pred -H---HHHHHHHhCCCCEEEEe
Confidence 1 12344445678877653
No 158
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=61.86 E-value=19 Score=27.20 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=34.1
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhc-CCCceEEEEeecCC----------------CCCCCCCCCcCEEEEc
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE-EGERWDLFRVVEGD----------------FPDFNDLHKYDGFVIS 68 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~----------------~~~~~~l~~~dglIi~ 68 (250)
+||+|+..+... .-. ...+.+.+.+++ .|.+++++++.... .....++.++|+||+.
T Consensus 2 mkilii~~S~~g-~t~----~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g 75 (198)
T 3b6i_A 2 AKVLVLYYSMYG-HIE----TMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFG 75 (198)
T ss_dssp CEEEEEECCSSS-HHH----HHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEE
T ss_pred CeEEEEEeCCCc-HHH----HHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEE
Confidence 478888766322 111 122345566777 79999888875420 0013456789999886
No 159
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=61.73 E-value=14 Score=29.90 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=43.6
Q ss_pred ccceEEEEecC-----CCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CC--CCCCcCEEEEcCCCCCC
Q 025645 5 EEKRYALFLAA-----KDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FN--DLHKYDGFVISGSPYDA 74 (250)
Q Consensus 5 ~~~riail~~~-----~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~--~l~~~dglIi~Gg~~~~ 74 (250)
++.+|+++..+ ...++... +..-+.+.+++.|..+.+.....+.... .. .-.++||||+.+...+.
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 96 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSD----VLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD 96 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHH----HHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC
T ss_pred CCCEEEEEeCCCccccccCcHHHH----HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc
Confidence 34579999876 34443222 2334566777889887664321110000 00 01579999998753221
Q ss_pred CCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 75 YGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 75 ~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
+.++.+.+.++|+.-+
T Consensus 97 -----------~~~~~l~~~~iPvV~i 112 (305)
T 3huu_A 97 -----------PIEHLLNEFKVPYLIV 112 (305)
T ss_dssp -----------HHHHHHHHTTCCEEEE
T ss_pred -----------HHHHHHHHcCCCEEEE
Confidence 1234444567777655
No 160
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=61.56 E-value=7.6 Score=31.38 Aligned_cols=84 Identities=18% Similarity=0.017 Sum_probs=46.4
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC----CCC--CCCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD----FND--LHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~----~~~--l~~~dglIi~Gg~~~~~~~~~ 79 (250)
+.+|+++..+...++... ...-+.+.+++.|.++.++.....+... ... -.++||||+.+.. .
T Consensus 4 ~~~Ig~i~~~~~~~~~~~----~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~--~----- 72 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNR----MGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPND--A----- 72 (303)
T ss_dssp CEEEEEECSCSSCHHHHH----HHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSC--H-----
T ss_pred ceEEEEEeccCCChHHHH----HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCC--h-----
Confidence 468999986666554332 2334566777888766543211111000 000 1578999998641 1
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEe
Q 025645 80 WILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGIC 102 (250)
......++.+.+.++|++-+.
T Consensus 73 --~~~~~~~~~~~~~~ipvV~~~ 93 (303)
T 3d02_A 73 --NVLEPVFKKARDAGIVVLTNE 93 (303)
T ss_dssp --HHHHHHHHHHHHTTCEEEEES
T ss_pred --HHHHHHHHHHHHCCCeEEEEe
Confidence 122344566666788887654
No 161
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=61.50 E-value=21 Score=28.85 Aligned_cols=154 Identities=13% Similarity=0.133 Sum_probs=80.8
Q ss_pred HHHHHHHhcCCCceEEEEeec--CCCCC-CCCCCCcCEEEEcCCCCCCC--CCChh-----HHHHHHHHHHHHhcCCcEE
Q 025645 30 NVFVAAFGEEGERWDLFRVVE--GDFPD-FNDLHKYDGFVISGSPYDAY--GNDNW-----ILKLCFMLQTLDAMQKKVL 99 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~--~~~~~-~~~l~~~dglIi~Gg~~~~~--~~~~~-----~~~~~~~i~~~~~~~~Pil 99 (250)
..+..+|+..|.+++.+.... ..+|. .+.|++||.||+..-..+.. ....| .....+.|++..+.|-=++
T Consensus 36 ~~~~~aL~~~~~~V~~i~~~~~~~~fP~~~~~L~~yDvIIl~d~~~~~~l~~~~~~~~~~~~~~~~~~l~~~V~~GGgLi 115 (248)
T 3soz_A 36 DYLLSCLRQGNIDVDYMPAHIVQTRFPQTAEALACYDAIVISDIGSNTFLLQNRTFYNMDIIPDALQLIADYVAEGGGLL 115 (248)
T ss_dssp HHHHHHHTTTTCEEEEEETTHHHHSCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhcCCceeEEeCchhhhhhCCCChHHHhcCCEEEEcCCCcchhccCccccccccCCHHHHHHHHHHHHhCCEEE
Confidence 457789999999988776422 34553 35678999999994322110 00011 1233567777777788777
Q ss_pred EEeh--HHH-----------HHHHHcCceEEecCCCce--eeEEEEEEecCCCCCCcccccCCCCCceE-EEeeeccccc
Q 025645 100 GICF--GHQ-----------VLCRALGGKVGKAYTGWD--IGLRRVRIVNDLAPCSFLEDLGEIPGSLS-IMECHRDEVW 163 (250)
Q Consensus 100 GIC~--G~Q-----------lla~a~gg~v~~~~~~~~--~g~~~i~~~~~~~~~~l~~~~~~l~~~~~-~~~~H~~~v~ 163 (250)
++-- ++| .|+..|+..........+ .|.... + .+..++++++ ++ .+. ...+.. +
T Consensus 116 ~~gG~~~f~g~~~~g~~~~t~l~~vLPV~~~~~~~r~e~p~g~~~~-~--~~~~Hpit~~---l~-~~p~~~g~~~--v- 185 (248)
T 3soz_A 116 MIGGYLSFTGIEAKANYKNTVLAEVLPVDMLDVDDRVELPQGCKAV-N--TAVEHVITQP---FS-EWPPLLGYNK--L- 185 (248)
T ss_dssp EECSTTSSSCGGGCSCGGGSTHHHHSSEECCSSCCEEEEEEEEEEE-E--CSSCCTTTTT---CS-EEEEEEEEEC--C-
T ss_pred EEcCchhccccccccccccCcHHHhCCccccccCcccccCCCcccc-c--cccCChhhcc---cc-cCCcccccee--e-
Confidence 7732 222 155666544321111011 222221 2 2246788877 44 222 222222 2
Q ss_pred ccCCccEEEEEcCCCceEEEE-EC-CcEEEEe
Q 025645 164 KVPIGAEVIGFSDKTGVEMFT-IG-DHILGIQ 193 (250)
Q Consensus 164 ~lp~~~~~la~s~~~~v~~~~-~~-~~~~g~Q 193 (250)
...++.++++..++.+..+.. ++ +++..+-
T Consensus 186 ~~k~ga~vl~~~~g~PlLa~~~~G~GRv~~la 217 (248)
T 3soz_A 186 IAKENSQVLAEINGDPLLVMGTYHKGKVCCFA 217 (248)
T ss_dssp EECSSCEEEEEETTEEEEEEEEETTEEEEEES
T ss_pred EeCCCCEEEEecCCceEEEEeccCCcEEEEEe
Confidence 245667888887655544433 33 3555444
No 162
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=61.42 E-value=7.3 Score=31.43 Aligned_cols=82 Identities=10% Similarity=0.062 Sum_probs=45.0
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----C--CCCCcCEEEEcCCCCCCCCCCh
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----N--DLHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~--~l~~~dglIi~Gg~~~~~~~~~ 79 (250)
.+|+++..+...+++.. ...-+.+.+++.|.++.+..+....-+.. + .-.++||||+.+...+.
T Consensus 2 ~~Igvi~~~~~~~f~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~----- 72 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVD----MKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVN----- 72 (288)
T ss_dssp CEEEEEESCSSSHHHHH----HHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSST-----
T ss_pred cEEEEEeCCCCchHHHH----HHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHH-----
Confidence 47899987766665332 23345667788898877654211110000 0 01468999998642211
Q ss_pred hHHHHHHHHHHHHhcCCcEEEE
Q 025645 80 WILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~~PilGI 101 (250)
. ...++.+.+.++|+.-+
T Consensus 73 -~---~~~~~~~~~~~iPvV~~ 90 (288)
T 1gud_A 73 -L---VMPVARAWKKGIYLVNL 90 (288)
T ss_dssp -T---HHHHHHHHHTTCEEEEE
T ss_pred -H---HHHHHHHHHCCCeEEEE
Confidence 0 11234455668887655
No 163
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=61.38 E-value=18 Score=31.69 Aligned_cols=64 Identities=11% Similarity=0.169 Sum_probs=43.5
Q ss_pred HHHhc-CCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 34 AAFGE-EGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 34 ~~l~~-~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
+||++ .|.++..-.+...++|+.++|.+||.||=+||=+-- ...+..-++.+.+.++|+- =+|.
T Consensus 343 ~~~~~~~~~~~~~~~~~g~~~p~~~~~~~~~l~i~cg~cm~~------~~~~~~r~~~~~~~~~p~~--nyg~ 407 (423)
T 3qq5_A 343 RWLVNHTGAQLNFKVIAGKDFPDLEEIENAKLIIHCGGCILN------RSAMMRRVRMAKRLGIPMT--NYGV 407 (423)
T ss_dssp HHHHHHSCSCCEEEEECSSSCCCHHHHSSCSEEEECTTTCCC------HHHHHHHHHHHHHTTCCEE--EHHH
T ss_pred HHHHHHhCCCcEEEEecCCCCCCccCcccCcEEEECcchhcC------HHHHHHHHHHHHHcCCCee--cHHH
Confidence 44433 355666555556677764478999999999984422 2456667788899999984 4665
No 164
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=61.05 E-value=36 Score=24.51 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=53.8
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEee--cCC------CCCCCCC-CCcCEEEEcCCCCCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVV--EGD------FPDFNDL-HKYDGFVISGSPYDAY 75 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~--~~~------~~~~~~l-~~~dglIi~Gg~~~~~ 75 (250)
++++|||+..+.+.. .+...+.+.|.+.|.++-.++.. ..+ +++..++ +.+|.++|.=.+....
T Consensus 12 ~p~~vaVvGas~~~g-------~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp~~~~~ 84 (140)
T 1iuk_A 12 QAKTIAVLGAHKDPS-------RPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPPSALM 84 (140)
T ss_dssp HCCEEEEETCCSSTT-------SHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCHHHHT
T ss_pred CCCEEEEECCCCCCC-------ChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeCHHHHH
Confidence 467899998765542 34555677788888864444332 111 2333333 2467776663221100
Q ss_pred CC----------ChhHH---HHHHHHHHHHhcCCcEEE-EehHHHHHHH
Q 025645 76 GN----------DNWIL---KLCFMLQTLDAMQKKVLG-ICFGHQVLCR 110 (250)
Q Consensus 76 ~~----------~~~~~---~~~~~i~~~~~~~~PilG-IC~G~Qlla~ 110 (250)
+- .-|+. ...++.+.+.+.++.++| =|.|.+.-..
T Consensus 85 ~v~~~~~~~gi~~i~~~~g~~~~~~~~~a~~~Gir~vgpnc~g~~~~~~ 133 (140)
T 1iuk_A 85 DHLPEVLALRPGLVWLQSGIRHPEFEKALKEAGIPVVADRCLMVEHKRL 133 (140)
T ss_dssp TTHHHHHHHCCSCEEECTTCCCHHHHHHHHHTTCCEEESCCHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCcCHHHHHHHHHHcCCEEEcCCccceEChhh
Confidence 00 00100 024566667778899999 8999876443
No 165
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=60.40 E-value=40 Score=27.75 Aligned_cols=15 Identities=20% Similarity=-0.013 Sum_probs=8.8
Q ss_pred CCccccceEEEEecC
Q 025645 1 MDLMEEKRYALFLAA 15 (250)
Q Consensus 1 m~~~~~~riail~~~ 15 (250)
|+.|.++||+|+.++
T Consensus 4 M~~M~~irv~IIG~G 18 (304)
T 3bio_A 4 MTDDKKIRAAIVGYG 18 (304)
T ss_dssp ----CCEEEEEECCS
T ss_pred CccCCCCEEEEECCh
Confidence 445667899999764
No 166
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=60.23 E-value=11 Score=27.90 Aligned_cols=58 Identities=9% Similarity=0.055 Sum_probs=30.1
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-CCCCCCcCEEEEcC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-FNDLHKYDGFVISG 69 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~l~~~dglIi~G 69 (250)
|||+|+-.+.. .... .....+.+.+.+.|++++++.+...+..+ ..++.++|+||+.-
T Consensus 1 Mkv~IvY~S~t-GnT~----~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gs 59 (161)
T 3hly_A 1 MSVLIGYLSDY-GYSD----RLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGT 59 (161)
T ss_dssp -CEEEEECTTS-TTHH----HHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEEC
T ss_pred CEEEEEEECCC-hHHH----HHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEc
Confidence 46777764432 1111 12234566677789988887754322110 01234689888863
No 167
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=60.04 E-value=7.4 Score=31.39 Aligned_cols=61 Identities=10% Similarity=0.104 Sum_probs=35.2
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CCC--CCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FND--LHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~~--l~~~dglIi~Gg 70 (250)
+.+|+++..+...++... +..-+.+.+++.|.++.+.....+.... ... -.++||||+.+.
T Consensus 20 ~~~Ig~i~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 85 (293)
T 2iks_A 20 TRSIGLVIPDLENTSYTR----IANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTS 85 (293)
T ss_dssp CCEEEEEESCSCSHHHHH----HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CcEEEEEeCCCcCcHHHH----HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 457999987666655332 2344566778889887765422110000 000 146899999875
No 168
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=59.19 E-value=37 Score=27.58 Aligned_cols=54 Identities=11% Similarity=-0.166 Sum_probs=28.4
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHH---hcCCcEEEEehHHHHHHHHcC
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLD---AMQKKVLGICFGHQVLCRALG 113 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~---~~~~PilGIC~G~Qlla~a~g 113 (250)
.++|+|+++-...+..-...+.....+.+++.. +.++|++++....--....+|
T Consensus 89 ~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~~~A~~~al~~~g 145 (273)
T 2xed_A 89 AAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALD 145 (273)
T ss_dssp TCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEHHHHHHHHHHHTT
T ss_pred cCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecHHHHHHHHHHHcC
Confidence 468999998532221111122334445555543 227999998544433334455
No 169
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=58.68 E-value=42 Score=27.46 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=35.6
Q ss_pred cceEEEEecC--CCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC---CC--CCCcCEEEEcCC
Q 025645 6 EKRYALFLAA--KDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF---ND--LHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~---~~--l~~~dglIi~Gg 70 (250)
+.+|+++..+ ...+++.. +..-+.+.+++.|..+.+.....+..... +. -.++||||+.+.
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSE----LLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHH----HHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCEEEEEecCCcccChhHHH----HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4579999876 45554332 23445677888899887765221100000 00 147899999874
No 170
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=57.74 E-value=20 Score=28.83 Aligned_cols=82 Identities=11% Similarity=0.027 Sum_probs=42.7
Q ss_pred ccceEEEEecCC-----CChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CC--CCCCcCEEEEcCCCCCC
Q 025645 5 EEKRYALFLAAK-----DSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FN--DLHKYDGFVISGSPYDA 74 (250)
Q Consensus 5 ~~~riail~~~~-----~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~--~l~~~dglIi~Gg~~~~ 74 (250)
++..|||+..+. ..+++. .+..-+.+.+++.|..+.+.....+.... .. .-.++||||+.+...+.
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~----~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~ 81 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYI----NVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEND 81 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHH----HHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTC
T ss_pred CCcEEEEEeecCCcccccChHHH----HHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccCh
Confidence 356799998432 233322 23344567788889887654321100000 00 01579999998653211
Q ss_pred CCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 75 YGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 75 ~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
+.++.+.+.++|+.-+
T Consensus 82 -----------~~~~~l~~~~iPvV~i 97 (295)
T 3hcw_A 82 -----------PIKQMLIDESMPFIVI 97 (295)
T ss_dssp -----------HHHHHHHHTTCCEEEE
T ss_pred -----------HHHHHHHhCCCCEEEE
Confidence 1234444567777654
No 171
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=57.66 E-value=1.9 Score=37.68 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=42.5
Q ss_pred ccceEEEEecCCCCh------hHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----CCCCCcCEEEEcCCCC
Q 025645 5 EEKRYALFLAAKDSD------YVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----NDLHKYDGFVISGSPY 72 (250)
Q Consensus 5 ~~~riail~~~~~~~------~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~l~~~dglIi~Gg~~ 72 (250)
+++|++||.+++.-- ..-+.|.+...++..+|++.|.++..+.+..++.... ..++++|.||.+||.+
T Consensus 179 ~~prv~IistGdEl~~~g~~~~~G~i~DsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s 257 (402)
T 1uz5_A 179 RKPKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGAS 257 (402)
T ss_dssp CCCEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC-
T ss_pred CCCEEEEEEcCccccCCCCCCCCCcEEcchHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 356899998764321 0123455566778899999999887666554331110 0123589999999864
No 172
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=57.45 E-value=35 Score=27.87 Aligned_cols=84 Identities=6% Similarity=-0.058 Sum_probs=47.2
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CCC--CCC--cCEEEEcCCCCCCCCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FND--LHK--YDGFVISGSPYDAYGND 78 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~~--l~~--~dglIi~Gg~~~~~~~~ 78 (250)
+.+|+++..+...++... +..-+.+.+++.|.++.+.....+.... ... -.+ +||||+.+...
T Consensus 5 s~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~------ 74 (332)
T 2rjo_A 5 QTTLACSFRSLTNPYYTA----FNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDS------ 74 (332)
T ss_dssp CCEEEEEESCTTSHHHHH----HHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSH------
T ss_pred ccEEEEEecCCCcHHHHH----HHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH------
Confidence 468999987666655332 2344566778889888766422110000 000 135 99999986421
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 79 NWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 79 ~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
....+.++.+.+.++|++.+.
T Consensus 75 ---~~~~~~~~~~~~~~iPvV~~~ 95 (332)
T 2rjo_A 75 ---ADARVIVEACSKAGAYVTTIW 95 (332)
T ss_dssp ---HHHHHHHHHHHHHTCEEEEES
T ss_pred ---HHHHHHHHHHHHCCCeEEEEC
Confidence 122234555556688887653
No 173
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=56.57 E-value=10 Score=30.92 Aligned_cols=82 Identities=15% Similarity=0.020 Sum_probs=43.5
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC----CC--CCCCcCEEEEcCCCCCCCCCChh
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD----FN--DLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~----~~--~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
.+|+++..+... +.. .+..-+.+.+++.|.++.+......+... .. .-.++||||+.+...+.
T Consensus 2 ~~Ig~i~~~~~~-~~~----~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~------ 70 (313)
T 2h3h_A 2 LTIGVIGKSVHP-YWS----QVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTA------ 70 (313)
T ss_dssp CEEEEECSCSSH-HHH----HHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTT------
T ss_pred eEEEEEeCCCcH-HHH----HHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHH------
Confidence 578998765443 322 23344566777789877654321111000 00 01579999998653221
Q ss_pred HHHHHHHHHHHHhcCCcEEEEe
Q 025645 81 ILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGIC 102 (250)
....++.+.+.++|++.+.
T Consensus 71 ---~~~~~~~~~~~~iPvV~~~ 89 (313)
T 2h3h_A 71 ---VIPTIKKALEMGIPVVTLD 89 (313)
T ss_dssp ---THHHHHHHHHTTCCEEEES
T ss_pred ---HHHHHHHHHHCCCeEEEeC
Confidence 1123455556788887653
No 174
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=55.82 E-value=1.7 Score=35.17 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=36.0
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCc-eEEEEeecCCCCC---CCC--CCCcCEEEEcC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGER-WDLFRVVEGDFPD---FND--LHKYDGFVISG 69 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~~---~~~--l~~~dglIi~G 69 (250)
++.+|+++..+...++... +..-+.+.+++.|.+ +.+.....+.... ... -.++||||+.+
T Consensus 9 ~~~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 9 KSKMIGIIIPDLNNRFYAQ----IIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCEEEEEESCTTSHHHHH----HHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCEEEEEeCCCCChhHHH----HHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 4567999987766665433 234456778888988 6654322110000 000 14789999987
No 175
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=55.27 E-value=86 Score=25.89 Aligned_cols=40 Identities=23% Similarity=0.047 Sum_probs=23.3
Q ss_pred HHHHHhcCCCceEEEEeecCCC---------------CCCCCC--CCcCEEEEcCCC
Q 025645 32 FVAAFGEEGERWDLFRVVEGDF---------------PDFNDL--HKYDGFVISGSP 71 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~---------------~~~~~l--~~~dglIi~Gg~ 71 (250)
++++|.+.|.++...+...... .+++.+ .++|.||++.|-
T Consensus 20 ~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi 76 (326)
T 3eag_A 20 LAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVA 76 (326)
T ss_dssp HHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTC
T ss_pred HHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCc
Confidence 5677777888777665432110 012233 368999998763
No 176
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=54.90 E-value=15 Score=28.33 Aligned_cols=78 Identities=12% Similarity=0.057 Sum_probs=46.2
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-------CCCCCcCEEEEcCCCCCCCCCCh
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-------NDLHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-------~~l~~~dglIi~Gg~~~~~~~~~ 79 (250)
+||+||...+.... +.+...+.+.+++.|.+++++.+........ +.+..+|+||+. .|.--+.- |
T Consensus 2 mkiLiI~gsp~~~~-----s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~-~P~y~~~~-p 74 (192)
T 3f2v_A 2 PKTLIILAHPNISQ-----STVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQ-FPIYWFNC-P 74 (192)
T ss_dssp CCEEEEECCTTGGG-----CSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEE-EECBTTBC-C
T ss_pred CEEEEEEeCCCccH-----HHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEE-cChhhcCC-C
Confidence 57999987765431 2456667788888899999988764322111 124678998887 33221111 1
Q ss_pred hHHHHHHHHHHHHh
Q 025645 80 WILKLCFMLQTLDA 93 (250)
Q Consensus 80 ~~~~~~~~i~~~~~ 93 (250)
..++.++.++..
T Consensus 75 --a~lK~~iDrv~~ 86 (192)
T 3f2v_A 75 --PLLKQWLDEVLT 86 (192)
T ss_dssp --HHHHHHHHHHSC
T ss_pred --HHHHHHHHHHhh
Confidence 344556665543
No 177
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=54.07 E-value=3.5 Score=36.12 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=42.9
Q ss_pred ccceEEEEecCCCChh------HHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----CCCCCcCEEEEcCCCC
Q 025645 5 EEKRYALFLAAKDSDY------VLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----NDLHKYDGFVISGSPY 72 (250)
Q Consensus 5 ~~~riail~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~l~~~dglIi~Gg~~ 72 (250)
+++|++||.+++.--. .-+.|.+...++..+|++.|.++..+.+..++.... ..++++|.||.+||.+
T Consensus 176 ~~~rv~iistGdEl~~~g~~~~~G~i~dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~s 254 (411)
T 1g8l_A 176 RKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_dssp CCCEEEEEEECTTEECTTSCCCSSCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSSC
T ss_pred CCCEEEEEEcCccccCCCCCCCCCcEEcCchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCCC
Confidence 3568999987653210 112355566778899999999887665554331110 0124689999999854
No 178
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=54.01 E-value=31 Score=25.57 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=19.2
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeec
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVE 50 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 50 (250)
|||+|+..++... +.+..+++.+.+ +.+++.+.+..
T Consensus 4 Mkilii~~S~r~~-------g~t~~la~~~~~-~~~~~~~~l~~ 39 (184)
T 1rli_A 4 MKIAVINGGTRSG-------GNTDVLAEKAVQ-GFDAEHIYLQK 39 (184)
T ss_dssp -CEEEEESSCSSC-------CHHHHHHHHHHT-TTCCEEEEC--
T ss_pred cEEEEEECCCCCC-------ccHHHHHHHHHc-CCeEEEEEcCC
Confidence 5899988765421 344555555544 45566555543
No 179
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=53.56 E-value=36 Score=27.01 Aligned_cols=82 Identities=9% Similarity=0.011 Sum_probs=42.9
Q ss_pred cceEEEEecC--CCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC---CCCC--CCCcCEEEEcCCCCCCCCCC
Q 025645 6 EKRYALFLAA--KDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP---DFND--LHKYDGFVISGSPYDAYGND 78 (250)
Q Consensus 6 ~~riail~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~---~~~~--l~~~dglIi~Gg~~~~~~~~ 78 (250)
+.+|+++..+ ...++... +..-+.+.+++.|.++.+.....+... ..+. -.++||||+.+...+
T Consensus 19 ~~~Ig~i~~~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~----- 89 (296)
T 3brq_A 19 TQTLGLVVTNTLYHGIYFSE----LLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS----- 89 (296)
T ss_dssp CCEEEEEECGGGCC--CHHH----HHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSC-----
T ss_pred CceEEEEeCCcccCCchHHH----HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCC-----
Confidence 4579999865 44443222 233456677888988765532111000 0000 147999999875321
Q ss_pred hhHHHHHHHHHHHHh-cCCcEEEEe
Q 025645 79 NWILKLCFMLQTLDA-MQKKVLGIC 102 (250)
Q Consensus 79 ~~~~~~~~~i~~~~~-~~~PilGIC 102 (250)
. ..++.+.+ .++|++-+.
T Consensus 90 ---~---~~~~~l~~~~~iPvV~~~ 108 (296)
T 3brq_A 90 ---V---DEIDDIIDAHSQPIMVLN 108 (296)
T ss_dssp ---H---HHHHHHHHTCSSCEEEES
T ss_pred ---h---HHHHHHHhcCCCCEEEEc
Confidence 1 12344445 688887653
No 180
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=52.98 E-value=59 Score=23.13 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCC
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGS 70 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg 70 (250)
..+.+.+.+.|.++.++.. .+..++.++|.||+..+
T Consensus 20 ~~ia~~l~~~g~~v~~~~~-----~~~~~l~~~d~vi~g~p 55 (147)
T 2hna_A 20 EHLAEKLEEAGFTTETLHG-----PLLEDLPASGIWLVISS 55 (147)
T ss_dssp HHHHHHHHHTTCCEEEECC-----TTSCSSCSEEEEEEECC
T ss_pred HHHHHHHHHCCCceEEecC-----CCHHHcccCCeEEEEEC
Confidence 4456677777888776542 13345778898888643
No 181
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=52.81 E-value=3.4 Score=36.25 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=42.4
Q ss_pred cceEEEEecCCCCh------hHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----CCCCCcCEEEEcCCCC
Q 025645 6 EKRYALFLAAKDSD------YVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----NDLHKYDGFVISGSPY 72 (250)
Q Consensus 6 ~~riail~~~~~~~------~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~l~~~dglIi~Gg~~ 72 (250)
+.|++||.+++.-- ..-+.|.+...++..+|++.|.++..+.+..++.... ..++++|.||.+||-+
T Consensus 181 ~prv~IistGdEl~~~g~~~~~G~i~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s 258 (419)
T 2fts_A 181 FPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVS 258 (419)
T ss_dssp CCCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred CCEEEEEEechhccCCCCCCCCCcEecCchHHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCCCc
Confidence 56899998765411 0123455566678899999999887666554331110 0124589999999854
No 182
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=52.72 E-value=44 Score=28.49 Aligned_cols=87 Identities=8% Similarity=0.016 Sum_probs=45.1
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-CCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-FNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
+||+|+..+..- .-. ...+.+.+.+.+.|.+++.+.+...+... ..++.++|+||+...-.. .... ..+.
T Consensus 257 ~kv~iiy~S~~G-nT~----~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y~-~~~~---~~~k 327 (414)
T 2q9u_A 257 KKVTVVLDSMYG-TTH----RMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFASPTLN-NTMM---PSVA 327 (414)
T ss_dssp SEEEEEECCSSS-HHH----HHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCBT-TBCC---HHHH
T ss_pred CeEEEEEECCCc-hHH----HHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCccC-cCch---HHHH
Confidence 578887655432 111 12234556677778888888764322110 014567999998743221 1222 2344
Q ss_pred HHHHHHHh----cCCcEEEEe
Q 025645 86 FMLQTLDA----MQKKVLGIC 102 (250)
Q Consensus 86 ~~i~~~~~----~~~PilGIC 102 (250)
.+++++.. .++|+.-+|
T Consensus 328 ~fld~l~~~~~~~~K~~~~~~ 348 (414)
T 2q9u_A 328 AALNYVRGLTLIKGKPAFAFG 348 (414)
T ss_dssp HHHHHHHHHTTTTTSBEEEEE
T ss_pred HHHHHHHhhcccCCCEEEEEE
Confidence 45554432 466765554
No 183
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=51.84 E-value=11 Score=31.77 Aligned_cols=91 Identities=13% Similarity=0.008 Sum_probs=49.9
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC-CCCC---CCCCCCcCEEEEcCCCCCCCCCChhHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG-DFPD---FNDLHKYDGFVISGSPYDAYGNDNWIL 82 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~---~~~l~~~dglIi~Gg~~~~~~~~~~~~ 82 (250)
+|++|+.. +..... . ....+.+.|++.|.++.+...... +... .....++|.||+.||-+
T Consensus 30 ~~~~vi~N-p~sg~~-~----~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDG---------- 93 (332)
T 2bon_A 30 PASLLILN-GKSTDN-L----PLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDG---------- 93 (332)
T ss_dssp CCEEEEEC-SSSTTC-H----HHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHH----------
T ss_pred ceEEEEEC-CCCCCC-c----hHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccch----------
Confidence 46877753 222211 1 123467789999998876653211 1000 00113579999999833
Q ss_pred HHHHHHHHHH----hcCCcEEEEehHHHH-HHHHcC
Q 025645 83 KLCFMLQTLD----AMQKKVLGICFGHQV-LCRALG 113 (250)
Q Consensus 83 ~~~~~i~~~~----~~~~PilGIC~G~Ql-la~a~g 113 (250)
.+.+.++.+. ..+.|+..|=.|--= ++..+|
T Consensus 94 Tl~~v~~~l~~~~~~~~~plgiiP~Gt~N~fa~~l~ 129 (332)
T 2bon_A 94 TINEVSTALIQCEGDDIPALGILPLGTANDFATSVG 129 (332)
T ss_dssp HHHHHHHHHHHCCSSCCCEEEEEECSSSCHHHHHTT
T ss_pred HHHHHHHHHhhcccCCCCeEEEecCcCHHHHHHhcC
Confidence 3445566665 457787777455432 555554
No 184
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=51.69 E-value=52 Score=25.96 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=34.2
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC----CCC--CCCcCEEEEcCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD----FND--LHKYDGFVISGS 70 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~----~~~--l~~~dglIi~Gg 70 (250)
++.+|+++..+...++... +..-+.+.+++.|.++.+..... +... .+. -.++||||+.+.
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgii~~~~ 72 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAE----IIEAVEKNCFQKGYTLILGNAWN-NLEKQRAYLSMMAQKRVDGLLVMCS 72 (289)
T ss_dssp --CEEEEEESCTTSHHHHH----HHHHHHHHHHHHTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCEEEEEeCCCCChHHHH----HHHHHHHHHHHcCCeEEEEcCCC-ChHHHHHHHHHHHhCCCCEEEEEec
Confidence 3468999987666654332 23345667777898876653211 1000 000 147899999875
No 185
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=51.06 E-value=34 Score=26.97 Aligned_cols=59 Identities=8% Similarity=0.200 Sum_probs=36.1
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCC-----CCCcCEEEEcC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFND-----LHKYDGFVISG 69 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-----l~~~dglIi~G 69 (250)
++.+|+++..+...++... +..-+.+.+++.|.++.+.... +....... -.++|||| .+
T Consensus 4 ~~~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI-~~ 67 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFID----LIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII-IA 67 (280)
T ss_dssp CCCEEEEEESCTTSGGGHH----HHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE-EE
T ss_pred ccCEEEEEeCCCCChHHHH----HHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE-ec
Confidence 3468999987766665433 2344667888889988776544 11111111 14789999 44
No 186
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=50.78 E-value=54 Score=24.50 Aligned_cols=41 Identities=7% Similarity=0.177 Sum_probs=24.3
Q ss_pred ceEEEEecCCCChhHHHhhCCHH----HHHHHHHhcCC--CceEEEEeecCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYF----NVFVAAFGEEG--ERWDLFRVVEGDF 53 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~----~~~~~~l~~~g--~~~~~~~~~~~~~ 53 (250)
+||+||..++..+. +.+ +.+.+.+++.| .+++++.+...++
T Consensus 2 mkilii~~S~~~~~------s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~ 48 (201)
T 1t5b_A 2 SKVLVLKSSILAGY------SQSGQLTDYFIEQWREKHVADEITVRDLAANPV 48 (201)
T ss_dssp CEEEEEECCSSGGG------CHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCC
T ss_pred CeEEEEEeCCCCCC------ChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCC
Confidence 48999987765311 222 33455566655 7888887665444
No 187
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=50.72 E-value=9.9 Score=31.76 Aligned_cols=81 Identities=11% Similarity=0.045 Sum_probs=43.0
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CCC--CCCcCEEEEcCCCCCCCCCChh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FND--LHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~~--l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
..+|+++..+...+++.. +..-+.+.+++.|.++.+.....+.... ... -.++||||+.+...+
T Consensus 66 s~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~------- 134 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAA----MVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC------- 134 (348)
T ss_dssp --CEEEEESCSSSHHHHH----HHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG-------
T ss_pred CCEEEEEeCCCCCcHHHH----HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-------
Confidence 346999987665655332 3344567788889988766432110000 000 147899999864211
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 025645 81 ILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGI 101 (250)
. +.++.+.+.++|++-+
T Consensus 135 -~---~~~~~l~~~~iPvV~i 151 (348)
T 3bil_A 135 -A---NQLEDLQKQGMPVVLV 151 (348)
T ss_dssp -H---HHHHHHHHC-CCEEEE
T ss_pred -h---HHHHHHHhCCCCEEEE
Confidence 1 2234444567777654
No 188
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=50.52 E-value=56 Score=28.52 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=22.8
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEe
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRV 48 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 48 (250)
+..+||+|+..+..- -..+++|.+.|.++.....
T Consensus 7 ~~~k~v~viG~G~sG-----------~s~A~~l~~~G~~V~~~D~ 40 (451)
T 3lk7_A 7 FENKKVLVLGLARSG-----------EAAARLLAKLGAIVTVNDG 40 (451)
T ss_dssp TTTCEEEEECCTTTH-----------HHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEEeeCHHH-----------HHHHHHHHhCCCEEEEEeC
Confidence 456789998765321 1236788888888877664
No 189
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=49.94 E-value=21 Score=29.40 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=43.0
Q ss_pred cceEEEEecC-CCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC--CCCCC-----CC--CCCcCEEEEcCCCCCCC
Q 025645 6 EKRYALFLAA-KDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG--DFPDF-----ND--LHKYDGFVISGSPYDAY 75 (250)
Q Consensus 6 ~~riail~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~~~~-----~~--l~~~dglIi~Gg~~~~~ 75 (250)
+.+|+++..+ ...++... +..-+.+.+++.|.++.+...... .-+.. .. -.++||||+++.. ..
T Consensus 43 ~~~Igvi~~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~- 116 (342)
T 1jx6_A 43 PIKISVVYPGQQVSDYWVR----NIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDT-TR- 116 (342)
T ss_dssp CEEEEEEECCCSSCCHHHH----HHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSS-ST-
T ss_pred ceEEEEEecCCcccHHHHH----HHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCCh-Hh-
Confidence 4579999876 34444322 234456778888988776532221 10100 00 1479999995422 11
Q ss_pred CCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 76 GNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 76 ~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
. . ..++.+.+.++|++-+
T Consensus 117 -~----~---~~~~~~~~~~ip~V~~ 134 (342)
T 1jx6_A 117 -H----R---KFVEHVLDSTNTKLIL 134 (342)
T ss_dssp -T----H---HHHHHHHHHCSCEEEE
T ss_pred -H----H---HHHHHHHHcCCCEEEE
Confidence 0 1 1234444567886644
No 190
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=49.66 E-value=16 Score=30.11 Aligned_cols=39 Identities=10% Similarity=0.084 Sum_probs=25.1
Q ss_pred ccceEEEEecCCCChhHHHhhCCHH----HHHHHHHhcCCCceEEEEeec
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYF----NVFVAAFGEEGERWDLFRVVE 50 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~----~~~~~~l~~~g~~~~~~~~~~ 50 (250)
+.+||++|..+.... +++ +.+.+.+++.|++++++.+..
T Consensus 57 ~~mKILiI~GS~R~~-------S~T~~La~~~~~~l~~~G~eveiidL~d 99 (279)
T 2fzv_A 57 PPVRILLLYGSLRAR-------SFSRLAVEEAARLLQFFGAETRIFDPSD 99 (279)
T ss_dssp SCCEEEEEESCCSSS-------CHHHHHHHHHHHHHHHTTCEEEEBCCTT
T ss_pred CCCEEEEEEeCCCCC-------CHHHHHHHHHHHHHhhCCCEEEEEehhc
Confidence 357999998765432 233 334556677799888877644
No 191
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=49.42 E-value=2.3 Score=31.11 Aligned_cols=105 Identities=11% Similarity=0.032 Sum_probs=62.4
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHH-----------HHHHHhc-CCCceEEEEeec-CCCCCCCC---CCCcCEEEEcC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNV-----------FVAAFGE-EGERWDLFRVVE-GDFPDFND---LHKYDGFVISG 69 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~-----------~~~~l~~-~g~~~~~~~~~~-~~~~~~~~---l~~~dglIi~G 69 (250)
.|+||+.+.+.+++.+...-..+.+. =.++|++ .|++++.+.-.. +.-|...+ -.++|.||.+-
T Consensus 3 ~~~ialsv~D~dK~~~v~~a~~~~~ll~Gf~l~AT~gTa~~L~e~~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVInt~ 82 (134)
T 2xw6_A 3 MRALALIAHDAKKEEMVAFCQRHREVLARFPLVATGTTGRRIEEATGLTVEKLLSGPLGGDQQMGARVAEGRILAVIFFR 82 (134)
T ss_dssp SCEEEEEECGGGHHHHHHHHHHTHHHHTTSCEEECHHHHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTCEEEEEEEC
T ss_pred ccEEEEEEecccHHHHHHHHHHHHHHhCCCEEEEccHHHHHHHHhhCceEEEEEecCCCCcchHHHHHHCCCccEEEEcc
Confidence 46899999998887754332222222 1355666 788887764221 11010000 14689999997
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcC
Q 025645 70 SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALG 113 (250)
Q Consensus 70 g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~g 113 (250)
.|....... .+...+.|.+...++|++=-=-+...+..++.
T Consensus 83 ~pl~~~~h~---~D~~~IrR~A~~~~IP~~T~latA~a~v~al~ 123 (134)
T 2xw6_A 83 DPLTAQPHE---PDVQALLRVCDVHGVPLATNPMAAEALIPWLQ 123 (134)
T ss_dssp CTTTCCTTS---CCSHHHHHHHHHHTCCEECSHHHHHHHHHHHH
T ss_pred CcccCCCcc---chHHHHHHHHHHcCCCeEcCHHHHHHHHHHHH
Confidence 754321101 12234567788889999888788888877763
No 192
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=49.07 E-value=67 Score=25.59 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=23.8
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHHcCc
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGG 114 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a~gg 114 (250)
.++|++|+.-..... . +.+|+. .++||+||.--.-..+...|+
T Consensus 68 ~g~d~iviaCnt~~~------l----~~lr~~--~~iPvigi~e~~~~~a~~~~~ 110 (245)
T 3qvl_A 68 QGVDGHVIASFGDPG------L----LAAREL--AQGPVIGIAEAAMHMATMVAT 110 (245)
T ss_dssp HTCSEEEEC-CCCTT------H----HHHHHH--CSSCEEEHHHHHHHHHHHHCS
T ss_pred CCCCEEEEeCCChhH------H----HHHHHH--cCCCEECccHHHHHHHHHcCC
Confidence 368999998542221 1 234443 379999996543333444443
No 193
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=48.68 E-value=14 Score=30.20 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=32.2
Q ss_pred ccccceEEEEecC-CCC---hhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-------CCCCCcCEEEEcCC
Q 025645 3 LMEEKRYALFLAA-KDS---DYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-------NDLHKYDGFVISGS 70 (250)
Q Consensus 3 ~~~~~riail~~~-~~~---~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-------~~l~~~dglIi~Gg 70 (250)
...++||+|.-.. ... . .+.+.|++.|.++..+.+..-...+. ..+.++|.||++-.
T Consensus 18 ~l~g~~vlvtr~~~~~~~~~~-----------~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~ 85 (286)
T 1jr2_A 18 EGRHMKVLLLKDAKEDDCGQD-----------PYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSP 85 (286)
T ss_dssp ----CEEEEEESSCCCBTTBC-----------HHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCH
T ss_pred hhcCCEEEEEcCCCCCCCCCc-----------HHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCH
Confidence 4456788887654 321 2 25788999999876554332211111 23578999999954
No 194
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=48.04 E-value=3.8 Score=33.38 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=32.6
Q ss_pred ccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC--------CCCCCcCEEEEcCC
Q 025645 3 LMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF--------NDLHKYDGFVISGS 70 (250)
Q Consensus 3 ~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--------~~l~~~dglIi~Gg 70 (250)
+|..+||+| +.+... ...+.+.|++.|.++..+.+........ ..+.++|.||++-.
T Consensus 11 ~~~g~~Ilv--TRp~~~---------a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~ 75 (269)
T 3re1_A 11 DMSAWRLLL--TRPAEE---------SAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSK 75 (269)
T ss_dssp --CCCEEEE--CSCHHH---------HHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSH
T ss_pred ccCCCEEEE--eCChHH---------HHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECH
Confidence 466777654 443321 2347889999998876554332211111 13578999999943
No 195
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=47.98 E-value=27 Score=24.34 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCC
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGS 70 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg 70 (250)
..+.+.+++.|.+++++.+...+ ..++.++|+||+...
T Consensus 18 ~~i~~~l~~~g~~v~~~~~~~~~---~~~l~~~d~vi~g~p 55 (137)
T 2fz5_A 18 NEIEAAVKAAGADVESVRFEDTN---VDDVASKDVILLGCP 55 (137)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCC---HHHHHTCSEEEEECC
T ss_pred HHHHHHHHhCCCeEEEEEcccCC---HHHHhcCCEEEEEcc
Confidence 34556677778888887654321 234667899988743
No 196
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=47.35 E-value=14 Score=30.41 Aligned_cols=61 Identities=5% Similarity=-0.077 Sum_probs=33.5
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-----CCCCCCCCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-----FPDFNDLHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-----~~~~~~l~~~dglIi~Gg 70 (250)
..+|+++..+...++... +..-+.+.+++.|..+.+.....+. ....-.-.++||||+.+.
T Consensus 60 ~~~Ig~i~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 125 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAE----LARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSG 125 (332)
T ss_dssp CCEEEEEEC--CCSHHHH----HHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCS
T ss_pred CCEEEEEeCCCCCcHHHH----HHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecC
Confidence 457999986655554332 2334566777889887765422110 000001257999999874
No 197
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=47.33 E-value=55 Score=24.98 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=41.5
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHH---hcCCCceEEEEeecCCCCC---------C-------CCCCCcCEEEE
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAF---GEEGERWDLFRVVEGDFPD---------F-------NDLHKYDGFVI 67 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l---~~~g~~~~~~~~~~~~~~~---------~-------~~l~~~dglIi 67 (250)
++|+||.-+.... ++...+.+++ ...+.+++++.+.+ +|- + +.+...||+||
T Consensus 3 k~I~vi~GS~R~~-------S~~~~la~~~~~~~~~~~~~~~idl~d--LP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii 73 (190)
T 3u7r_A 3 KTVAVMVGSLRKD-------SLNHKLMKVLQKLAEGRLEFHLLHIGD--LPHYNDDLWADAPESVLRLKDRIEHSDAVLA 73 (190)
T ss_dssp EEEEEEESCCSTT-------CHHHHHHHHHHHHHTTTEEEEECCGGG--SCCCCGGGGGGCCHHHHHHHHHHHTSSEEEE
T ss_pred CEEEEEECCCCCC-------CHHHHHHHHHHHhccCCCEEEEEeccc--CCCCCCCcccCCCHHHHHHHHHHHhCCcEEE
Confidence 6899987554432 2333333332 23466766665432 321 0 12456899999
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHh-------cCCcEEEEe
Q 025645 68 SGSPYDAYGNDNWILKLCFMLQTLDA-------MQKKVLGIC 102 (250)
Q Consensus 68 ~Gg~~~~~~~~~~~~~~~~~i~~~~~-------~~~PilGIC 102 (250)
.--..+. .- -..++.+|.++.. .+||++-++
T Consensus 74 ~tPeYn~-s~---pg~LKn~iDwlsr~~~~~~~~gKpv~~v~ 111 (190)
T 3u7r_A 74 ITPEYNR-SY---PGMIKNAIDWATRPYGQNSWKGKPAAVIG 111 (190)
T ss_dssp ECCCBTT-BC---CHHHHHHHHHHHCSTTCCTTTTCEEEEEE
T ss_pred echhhcc-cC---CHHHHHHHHHhcccccCCccCCCEEEEEE
Confidence 8332221 11 1344555555421 367876665
No 198
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=46.56 E-value=20 Score=25.37 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcC
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISG 69 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~G 69 (250)
..+.+.+++.|.+++++.+...+ ..++.++|+||+..
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~~---~~~l~~~d~iiig~ 53 (138)
T 5nul_A 17 ELIAKGIIESGKDVNTINVSDVN---IDELLNEDILILGC 53 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGCC---HHHHTTCSEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEhhhCC---HHHHhhCCEEEEEc
Confidence 44566778889999888765432 23567899888864
No 199
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=45.71 E-value=28 Score=26.66 Aligned_cols=36 Identities=6% Similarity=0.108 Sum_probs=21.4
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhc---CCCceE-EEEe
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE---EGERWD-LFRV 48 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~~~-~~~~ 48 (250)
+|||++|..+.... +++..+.+++.+ .|++++ ++.+
T Consensus 4 ~mkil~I~GS~r~~-------s~t~~l~~~~~~~~~~g~~v~~~idL 43 (193)
T 3svl_A 4 KLQVVTLLGSLRKG-------SFNGMVARTLPKIAPASMEVNALPSI 43 (193)
T ss_dssp CEEEEEEECCCSTT-------CHHHHHHHHGGGTSCTTEEEEECCCS
T ss_pred CCEEEEEEccCCCC-------CHHHHHHHHHHHHccCCCEEEEEEeH
Confidence 47999998776543 455555655544 355555 4443
No 200
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=45.40 E-value=27 Score=26.14 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=54.2
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeec-CCCCCC----CCC-----CCcCEEEEcCCC--CCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVE-GDFPDF----NDL-----HKYDGFVISGSP--YDA 74 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~~~~----~~l-----~~~dglIi~Gg~--~~~ 74 (250)
.||+|+...-..+ +.+. ..+-..+.|.+.|.+++++++.. -+.|-. ..- .+||++|..|-- +..
T Consensus 13 ~ri~IV~arfn~~-I~~~---Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T 88 (157)
T 2i0f_A 13 PHLLIVEARFYDD-LADA---LLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGET 88 (157)
T ss_dssp CEEEEEEECSSHH-HHHH---HHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSS
T ss_pred cEEEEEEEeCcHH-HHHH---HHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCc
Confidence 6999998664432 2111 11223466777888888887632 122210 011 469999998743 111
Q ss_pred CCCChhH--HHHHHHHHHHHhcCCcE-EEEe---hHHHHHHHH
Q 025645 75 YGNDNWI--LKLCFMLQTLDAMQKKV-LGIC---FGHQVLCRA 111 (250)
Q Consensus 75 ~~~~~~~--~~~~~~i~~~~~~~~Pi-lGIC---~G~Qlla~a 111 (250)
+ ...++ .-...+++-.++.++|| +||- -=.|.+.++
T Consensus 89 ~-Hfd~Va~~v~~gl~~vsl~~~vPV~~GVLT~~~~eQA~~Ra 130 (157)
T 2i0f_A 89 Y-HFDIVSNESCRALTDLSVEESIAIGNGILTVENEEQAWVHA 130 (157)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHHh
Confidence 1 11222 22355666677889994 4543 245666665
No 201
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=45.07 E-value=10 Score=28.55 Aligned_cols=101 Identities=14% Similarity=0.047 Sum_probs=52.6
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCC-ceEEEEeec-CCCCCC--CCCCCcCEEEEcCCC--CCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGE-RWDLFRVVE-GDFPDF--NDLHKYDGFVISGSP--YDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~-~~~~~~--~~l~~~dglIi~Gg~--~~~~~~~~ 79 (250)
..||+|+...-..+ +.+. ...-..+.|.+.|. +++++++.. -+.|-. ...++||+||..|-. +..+ ...
T Consensus 17 ~~ri~IV~arfn~~-I~~~---Ll~gA~~~l~~~G~~~i~v~~VPGafEiP~aak~la~~yDavIaLG~VIrG~T~-Hfd 91 (160)
T 2c92_A 17 GVRLAIVASSWHGK-ICDA---LLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTP-HFD 91 (160)
T ss_dssp TCCEEEEEECSSHH-HHHH---HHHHHHHHHHHTTCSCCEEEEESSGGGHHHHHHHHHTSCSEEEEEEEEECCSST-HHH
T ss_pred CCEEEEEEEeCcHH-HHHH---HHHHHHHHHHHcCCCceEEEECCcHHHHHHHHHHHHhcCCEEEEEeeeecCCch-HHH
Confidence 46999998664432 1111 11223466777787 677776532 132210 012469999999843 1111 112
Q ss_pred hH--HHHHHHHHHHHhcCCcE-EE--Eeh-HHHHHHHH
Q 025645 80 WI--LKLCFMLQTLDAMQKKV-LG--ICF-GHQVLCRA 111 (250)
Q Consensus 80 ~~--~~~~~~i~~~~~~~~Pi-lG--IC~-G~Qlla~a 111 (250)
++ .-...+++-.++.++|| +| .|- =.|.+.++
T Consensus 92 ~Va~~vs~Gl~~v~L~~~vPV~~GVLT~~~~eQA~~Ra 129 (160)
T 2c92_A 92 YVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRA 129 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEEEESSHHHHHTTB
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEcCCCCHHHHHHHh
Confidence 22 22345666677789995 55 343 34444443
No 202
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=44.18 E-value=59 Score=24.22 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=47.9
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCc---eEEEEeec-CCCCCC----CCCCCcCEEEEcCCCC--C
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGER---WDLFRVVE-GDFPDF----NDLHKYDGFVISGSPY--D 73 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---~~~~~~~~-~~~~~~----~~l~~~dglIi~Gg~~--~ 73 (250)
++..||+|+...-..+ +.+. ...-..+.|.+.|.+ ++++++.. -+.|-. ..-.+||+||..|-.- .
T Consensus 8 ~~~~ri~IV~arfn~~-I~~~---Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~ 83 (158)
T 1di0_A 8 KTSFKIAFIQARWHAD-IVDE---ARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGG 83 (158)
T ss_dssp -CCEEEEEEEECTTHH-HHHH---HHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEECCCCS
T ss_pred CCCCEEEEEEEeCcHH-HHHH---HHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCC
Confidence 4567999998664432 1111 112234556666754 55666532 122210 0124699999998542 1
Q ss_pred CCCCChhH--HHHHHHHHHHHhcCCcE-EEE
Q 025645 74 AYGNDNWI--LKLCFMLQTLDAMQKKV-LGI 101 (250)
Q Consensus 74 ~~~~~~~~--~~~~~~i~~~~~~~~Pi-lGI 101 (250)
. ....++ .-...+++-.++.++|| +||
T Consensus 84 T-~Hfd~Va~~vs~Gl~~v~L~~~vPV~~GV 113 (158)
T 1di0_A 84 I-YDHDFVATAVINGMMQVQLETEVPVLSVV 113 (158)
T ss_dssp S-BCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred C-cHHHHHHHHHHHHHHHHHhhcCCCEEEEe
Confidence 1 111222 22355666677889995 453
No 203
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=43.96 E-value=1.1e+02 Score=23.59 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=9.8
Q ss_pred CCccccceEEEEecCC
Q 025645 1 MDLMEEKRYALFLAAK 16 (250)
Q Consensus 1 m~~~~~~riail~~~~ 16 (250)
|..+.+.||+++..+.
T Consensus 1 ~~~~~~~~ig~i~p~~ 16 (228)
T 2eq5_A 1 MYRMDKYTIGLIRVIT 16 (228)
T ss_dssp -----CEEEEEEESSC
T ss_pred CCCccceEEEEEeccC
Confidence 7777788999999876
No 204
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=43.56 E-value=59 Score=27.63 Aligned_cols=78 Identities=14% Similarity=0.220 Sum_probs=43.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCC--CCcCEEEEcCCCCCCCCCChhHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDL--HKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l--~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
+.+|||+.. ...++... +..-+.+.+++.|..+.+..... +......+ .++||||+.. . . .
T Consensus 25 s~~Igvv~~-~~~~f~~~----l~~gi~~~a~~~g~~~~i~~~~~-~~~~i~~l~~~~vDGiIi~~--~----~----~- 87 (412)
T 4fe7_A 25 RHRITLLFN-ANKAYDRQ----VVEGVGEYLQASQSEWDIFIEED-FRARIDKIKDWLGDGVIADF--D----D----K- 87 (412)
T ss_dssp CEEEEEECC-TTSHHHHH----HHHHHHHHHHHHTCCEEEEECC--CC--------CCCSEEEEET--T----C----H-
T ss_pred CceEEEEeC-CcchhhHH----HHHHHHHHHHhcCCCeEEEecCC-ccchhhhHhcCCCCEEEEec--C----C----h-
Confidence 456999984 44444322 23445677788898887765322 11111112 4689999931 1 1 1
Q ss_pred HHHHHHHHHhcCCcEEEEe
Q 025645 84 LCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC 102 (250)
+.++.+.+.++|++-+.
T Consensus 88 --~~~~~l~~~~iPvV~i~ 104 (412)
T 4fe7_A 88 --QIEQALADVDVPIVGVG 104 (412)
T ss_dssp --HHHHHHTTCCSCEEEEE
T ss_pred --HHHHHHhhCCCCEEEec
Confidence 23455666789987664
No 205
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=43.49 E-value=89 Score=24.41 Aligned_cols=41 Identities=2% Similarity=0.078 Sum_probs=22.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcC-CCceEEEEeec
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEE-GERWDLFRVVE 50 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~ 50 (250)
|||+|+..++...-... ...+.+.+.+++. |.+++++.+.+
T Consensus 2 mkIliI~gS~r~~s~T~---~la~~i~~~l~~~~g~~v~~~dl~~ 43 (242)
T 1sqs_A 2 NKIFIYAGVRNHNSKTL---EYTKRLSSIISSRNNVDISFRTPFN 43 (242)
T ss_dssp CEEEEEECCCCTTCHHH---HHHHHHHHHHHHHSCCEEEEECTTT
T ss_pred CeEEEEECCCCCCChHH---HHHHHHHHHHHHhcCCeEEEEEccc
Confidence 48888886654210000 0123344555555 88888877654
No 206
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=43.27 E-value=31 Score=25.39 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=32.0
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecC-CCCC-CCCCCCcCEEEEcC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEG-DFPD-FNDLHKYDGFVISG 69 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~-~~~l~~~dglIi~G 69 (250)
.++|+|+-.+.. .... ...+.+.+.+++.|++++++.+... +..+ ..++.++|+||+.-
T Consensus 4 ~~kv~IvY~S~~-GnT~----~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gs 64 (159)
T 3fni_A 4 ETSIGVFYVSEY-GYSD----RLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGM 64 (159)
T ss_dssp CCEEEEEECTTS-TTHH----HHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEEC
T ss_pred CCEEEEEEECCC-hHHH----HHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEc
Confidence 357888764432 1111 1223456677778998888776432 1110 01345689888863
No 207
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=43.24 E-value=56 Score=27.09 Aligned_cols=83 Identities=13% Similarity=0.074 Sum_probs=39.0
Q ss_pred cceEEEEecCCCChhHHHh-hCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC------CCCCcCEEEEcCCCCCCCCCC
Q 025645 6 EKRYALFLAAKDSDYVLKV-YGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN------DLHKYDGFVISGSPYDAYGND 78 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~------~l~~~dglIi~Gg~~~~~~~~ 78 (250)
...|+++..+.....+... |..+..-+.+.++ |..+.++....+...... .-.++||||+.+...+ .
T Consensus 68 s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~--g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~----~ 141 (366)
T 3h5t_A 68 AGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG--DTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVAKG----D 141 (366)
T ss_dssp CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS--SCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESCCTT----C
T ss_pred CCEEEEEecCCccccccCHHHHHHHHHHHHHHh--hCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecCCCC----h
Confidence 4569999866432211111 1111222334444 777766654322110000 0247899999865221 1
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEE
Q 025645 79 NWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 79 ~~~~~~~~~i~~~~~~~~PilGI 101 (250)
..++.+.+.++|+.-+
T Consensus 142 -------~~~~~l~~~~iPvV~i 157 (366)
T 3h5t_A 142 -------PHIDAIRARGLPAVIA 157 (366)
T ss_dssp -------HHHHHHHHHTCCEEEE
T ss_pred -------HHHHHHHHCCCCEEEE
Confidence 1233444557777655
No 208
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=43.23 E-value=35 Score=28.06 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=53.2
Q ss_pred CCccccceEEEEecC-CCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC-C--CCCCCCcCEEEEcCCCCCCCC
Q 025645 1 MDLMEEKRYALFLAA-KDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP-D--FNDLHKYDGFVISGSPYDAYG 76 (250)
Q Consensus 1 m~~~~~~riail~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-~--~~~l~~~dglIi~Gg~~~~~~ 76 (250)
|...+.+|+.|+... ......... ...+.+.|++.|.+++++........ . .+..+++|.||+.||-+
T Consensus 3 m~~~~m~~~~vi~Np~sG~~~~~~~----~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDG---- 74 (304)
T 3s40_A 3 MTKTKFEKVLLIVNPKAGQGDLHTN----LTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDG---- 74 (304)
T ss_dssp --CCSCSSEEEEECTTCSSSCHHHH----HHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHH----
T ss_pred CccCCCCEEEEEECcccCCCchHHH----HHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccch----
Confidence 443334677777532 222221111 23456788888988877653221100 0 00124789999999833
Q ss_pred CChhHHHHHHHHHHHHh--cCCcEEEEehHHH-HHHHHcC
Q 025645 77 NDNWILKLCFMLQTLDA--MQKKVLGICFGHQ-VLCRALG 113 (250)
Q Consensus 77 ~~~~~~~~~~~i~~~~~--~~~PilGIC~G~Q-lla~a~g 113 (250)
.+.+.++.+.. .+.|+..|=.|-- .+|+.+|
T Consensus 75 ------Tl~~v~~~l~~~~~~~~l~iiP~Gt~N~~ar~lg 108 (304)
T 3s40_A 75 ------TVFECTNGLAPLEIRPTLAIIPGGTCNDFSRTLG 108 (304)
T ss_dssp ------HHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred ------HHHHHHHHHhhCCCCCcEEEecCCcHHHHHHHcC
Confidence 23445555555 5677777776655 4666665
No 209
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=42.35 E-value=29 Score=25.47 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=20.4
Q ss_pred HHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcC
Q 025645 31 VFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISG 69 (250)
Q Consensus 31 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~G 69 (250)
.+.+.+... ..++++.+...+ ..++.++|.||+.-
T Consensus 20 ~ia~~l~~~-~~v~~~~~~~~~---~~~l~~~d~ii~g~ 54 (169)
T 1czn_A 20 SIQQEFGGE-SIVDLNDIANAD---ASDLNAYDYLIIGC 54 (169)
T ss_dssp HHHHHHTST-TTEEEEEGGGCC---GGGGGGCSEEEEEC
T ss_pred HHHHHhCcc-cceEEEEhhhCC---HhHHhhCCEEEEEe
Confidence 344445443 456777654322 23577899988864
No 210
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=42.32 E-value=5.5 Score=30.60 Aligned_cols=60 Identities=8% Similarity=0.083 Sum_probs=32.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHH-HhcCCCceEEEEeecCCC---------CC-----CCCCCCcCEEEEcC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAA-FGEEGERWDLFRVVEGDF---------PD-----FNDLHKYDGFVISG 69 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~-l~~~g~~~~~~~~~~~~~---------~~-----~~~l~~~dglIi~G 69 (250)
+||+|+..+....-... ...+.+.+. +++.|.+++++.+...+. ++ .+.+..+|+||+.-
T Consensus 3 mkilii~gS~r~~g~t~---~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~s 77 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTA---KLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVAT 77 (197)
T ss_dssp EEEEEEECCSSTTCHHH---HHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEE
T ss_pred ceEEEEECCCCCCChHH---HHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEe
Confidence 58988876643110000 012334455 666688888887654221 00 02355789998863
No 211
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=42.04 E-value=93 Score=22.29 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=10.0
Q ss_pred CCCCCcCEEEEcC
Q 025645 57 NDLHKYDGFVISG 69 (250)
Q Consensus 57 ~~l~~~dglIi~G 69 (250)
.++.++|+||+..
T Consensus 72 ~~l~~~d~iilG~ 84 (151)
T 3edo_A 72 IDYNNYDLILIGS 84 (151)
T ss_dssp CCGGGCSEEEEEE
T ss_pred hCHhhCCEEEEEc
Confidence 4577899998873
No 212
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=41.93 E-value=1.1e+02 Score=24.89 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=35.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC----CCC--CCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD----FND--LHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~----~~~--l~~~dglIi~Gg 70 (250)
..+|+++..+...++... +..-+.+.+++.|.++.+..... +... ... -.++||||+.+.
T Consensus 58 ~~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~ 123 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAE----IIEAVEKNCFQKGYTLILGNAWN-NLEKQRAYLSMMAQKRVDGLLVMCS 123 (340)
T ss_dssp CSEEEEEESCSCSHHHHH----HHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCEEEEEeCCCCChHHHH----HHHHHHHHHHHcCCEEEEEeCCC-CHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 457999987666655332 33445677788898876653211 1000 000 147899999865
No 213
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=41.91 E-value=25 Score=26.30 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=45.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEE--EEeecC--CCCCC----CCCCCcCEEEEcCCCCCCCCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDL--FRVVEG--DFPDF----NDLHKYDGFVISGSPYDAYGND 78 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~--~~~~~~--~~~~~----~~l~~~dglIi~Gg~~~~~~~~ 78 (250)
.||+|++..-....+. +-..+.|.+.|.+.++ +++ ++ +.|-. ..-.+||+||..|-.+.. .-.
T Consensus 3 ~ri~IV~arfn~~~Ll-------~gA~~~L~~~G~~~~i~~~~V-PGafEiP~aak~la~~~~yDavIaLG~VG~T-~Hf 73 (156)
T 2b99_A 3 KKVGIVDTTFARVDMA-------SIAIKKLKELSPNIKIIRKTV-PGIKDLPVACKKLLEEEGCDIVMALGMPGKA-EKD 73 (156)
T ss_dssp CEEEEEEESSCSSCCH-------HHHHHHHHHHCTTCEEEEEEE-SSGGGHHHHHHHHHHHSCCSEEEEEECCCSS-HHH
T ss_pred cEEEEEEEecchHHHH-------HHHHHHHHHcCCCCeEEEEEC-CcHHHHHHHHHHHHhcCCCCEEEEecccCCc-chh
Confidence 6899998553332221 2234667777765443 443 33 22210 011469999999976211 111
Q ss_pred hhHH--HHHHHHHHHHhcCCcE-EEEe
Q 025645 79 NWIL--KLCFMLQTLDAMQKKV-LGIC 102 (250)
Q Consensus 79 ~~~~--~~~~~i~~~~~~~~Pi-lGIC 102 (250)
.++. -...+.+-.++.++|| +|+|
T Consensus 74 d~Va~~vs~Gl~~v~L~~~vPV~~gt~ 100 (156)
T 2b99_A 74 KVCAHEASLGLMLAQLMTNKHIIEVFV 100 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhhCCCEEEEeC
Confidence 2221 2344556667788995 4544
No 214
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=40.64 E-value=4.9 Score=33.47 Aligned_cols=58 Identities=5% Similarity=0.037 Sum_probs=36.2
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----C--CCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----D--LHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~--l~~~dglIi~Gg 70 (250)
..+|+++..+...+++.. +..-+.+.+++.|.++.+..... +... . -.++||||+.+.
T Consensus 64 ~~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 64 SALVGVIVPDLSNEYYSE----SLQTIQQDLKAAGYQMLVAEANS---VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp CCEEEEEESCSSSHHHHH----HHHHHHHHHHHHTCEEEEEECCS---HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCEEEEEeCCCcChHHHH----HHHHHHHHHHHCCCEEEEECCCC---hHHHHHHHHHHHhCCCCEEEEcch
Confidence 457999987766665432 23445677788898887765322 1100 0 146899999875
No 215
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=40.51 E-value=37 Score=25.06 Aligned_cols=36 Identities=17% Similarity=-0.091 Sum_probs=21.9
Q ss_pred ccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEE
Q 025645 3 LMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLF 46 (250)
Q Consensus 3 ~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 46 (250)
+|+.|||+|= +++.-..+ -..+.++|++.|.++.-+
T Consensus 4 ~m~~mkI~ig-sDhaG~~l-------K~~i~~~L~~~G~eV~D~ 39 (148)
T 4em8_A 4 SMVVKRVFLS-SDHAGVEL-------RLFLSAYLRDLGCEVFDC 39 (148)
T ss_dssp CCSCSEEEEE-ECGGGHHH-------HHHHHHHHHHTTCEEEEC
T ss_pred cceeeEEEEE-ECchhHHH-------HHHHHHHHHHCCCEEEEe
Confidence 4555687765 34332222 345778999999776544
No 216
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=38.94 E-value=46 Score=28.15 Aligned_cols=59 Identities=10% Similarity=0.168 Sum_probs=32.6
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-CCCCCCcCEEEEcC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-FNDLHKYDGFVISG 69 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~l~~~dglIi~G 69 (250)
.+|+.|+-.+... .-. .....+.+.+.+.|.+++++.+...+.+. ..++.++|+||+.-
T Consensus 256 ~~k~~i~~~S~~g-nT~----~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigs 315 (404)
T 2ohh_A 256 DERVTVIYDTMHG-STR----KMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGA 315 (404)
T ss_dssp CSEEEEEECCSSS-HHH----HHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEEC
T ss_pred CCcEEEEEECCCh-HHH----HHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEEC
Confidence 3577777654322 111 12234556677778888887754321110 01366799999874
No 217
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=38.86 E-value=33 Score=28.80 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=32.2
Q ss_pred EEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHH
Q 025645 64 GFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCR 110 (250)
Q Consensus 64 glIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~ 110 (250)
||+-+||+.... -...+.+++.+...+.-++||..|.+-|..
T Consensus 5 gIltsGG~~pG~-----Na~ir~vv~~a~~~g~~v~Gi~~G~~Gl~~ 46 (319)
T 4a3s_A 5 GVLTSGGDSPGM-----NAAVRAVVRKAIYHDVEVYGIYNGYAGLIS 46 (319)
T ss_dssp EEEEESSCCTTH-----HHHHHHHHHHHHHTTCEEEEECSTTHHHHH
T ss_pred EEECcCCCcHHH-----HHHHHHHHHHHHHCCCEEEEEecchHHHcC
Confidence 678888865442 245667778888888999999999998865
No 218
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=38.73 E-value=48 Score=22.68 Aligned_cols=54 Identities=13% Similarity=-0.017 Sum_probs=31.5
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEc
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVIS 68 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~ 68 (250)
+||.++ |+.+...-. ......+++++.|+++++..+..++... .+.++|.++++
T Consensus 4 kkIll~-Cg~G~sTS~-----l~~k~~~~~~~~gi~~~i~a~~~~~~~~--~~~~~Dvil~~ 57 (106)
T 1e2b_A 4 KHIYLF-SSAGMSTSL-----LVSKMRAQAEKYEVPVIIEAFPETLAGE--KGQNADVVLLG 57 (106)
T ss_dssp EEEEEE-CSSSTTTHH-----HHHHHHHHHHHSCCSEEEEEECSSSTTH--HHHHCSEEEEC
T ss_pred cEEEEE-CCCchhHHH-----HHHHHHHHHHHCCCCeEEEEecHHHHHh--hccCCCEEEEc
Confidence 566655 665532100 1134567889999998876655554432 24568866654
No 219
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=38.30 E-value=1.3e+02 Score=22.73 Aligned_cols=38 Identities=0% Similarity=0.043 Sum_probs=23.5
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHH----HHHHHhcCCCceEEEEeecCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNV----FVAAFGEEGERWDLFRVVEGD 52 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~----~~~~l~~~g~~~~~~~~~~~~ 52 (250)
|||+||..++... +++.. +.+.+ +.|.+++++++....
T Consensus 1 MkiLiI~gspr~~-------s~t~~l~~~~~~~~-~~g~~v~~~dL~~~~ 42 (196)
T 3lcm_A 1 MKILIVYTHPNPT-------SFNAEILKQVQTNL-SKEHTVSTLDLYAEH 42 (196)
T ss_dssp CEEEEEECCSCTT-------SHHHHHHHHHHHHS-CTTSEEEEEETTTTT
T ss_pred CEEEEEEeCCCCC-------ChHHHHHHHHHHHh-cCCCeEEEEEcccCC
Confidence 5789998776532 23333 33444 568888888876543
No 220
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=38.01 E-value=1.2e+02 Score=25.66 Aligned_cols=15 Identities=20% Similarity=0.118 Sum_probs=8.0
Q ss_pred CCc-cccceEEEEecC
Q 025645 1 MDL-MEEKRYALFLAA 15 (250)
Q Consensus 1 m~~-~~~~riail~~~ 15 (250)
|.+ ..++||+|+.++
T Consensus 1 M~~~~~~~rv~VvG~G 16 (372)
T 4gmf_A 1 MPSASPKQRVLIVGAK 16 (372)
T ss_dssp ------CEEEEEECST
T ss_pred CCCCCCCCEEEEEehH
Confidence 543 446789998776
No 221
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=37.76 E-value=42 Score=27.96 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=10.1
Q ss_pred CCccccceEEEEecC
Q 025645 1 MDLMEEKRYALFLAA 15 (250)
Q Consensus 1 m~~~~~~riail~~~ 15 (250)
|+++.++||+|+.++
T Consensus 13 ~~~~~~irvgiIG~G 27 (340)
T 1zh8_A 13 MKPLRKIRLGIVGCG 27 (340)
T ss_dssp ---CCCEEEEEECCS
T ss_pred cCCCCceeEEEEecC
Confidence 566677899999876
No 222
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=36.92 E-value=86 Score=27.10 Aligned_cols=68 Identities=9% Similarity=0.112 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCC----CCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcE
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDF----NDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKV 98 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~----~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pi 98 (250)
+.+++-|.+.|+++.++.+..-+..+. .++.++|+||+. +|.--.+-.+-+..+...+....-.++++
T Consensus 284 ~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlG-spT~~~~~~p~~~~~l~~l~~~~~~~K~~ 355 (410)
T 4dik_A 284 KKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFG-VSTYEAEIHPLMRFTLLEIIDKANYEKPV 355 (410)
T ss_dssp HHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEE-ECCTTSSSCHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEE-eCCcCCcCCHHHHHHHHHHHhcccCCCEE
Confidence 346677888999988776654332221 235689999985 43221222233333333343333345554
No 223
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=36.47 E-value=41 Score=25.19 Aligned_cols=41 Identities=2% Similarity=0.035 Sum_probs=22.4
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcC------CCceEEEEeec
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEE------GERWDLFRVVE 50 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~------g~~~~~~~~~~ 50 (250)
|||+|+..+....-... ...+.+.+.+++. |.+++++.+..
T Consensus 1 Mkilii~gS~r~~~~t~---~la~~~~~~l~~~~~~~~~g~~v~~~dl~~ 47 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCP---EIAAYVKRTIENSEELIDQKLKIQVVDLQQ 47 (191)
T ss_dssp CEEEEEECCCCSSCSHH---HHHHHHHHHHHTCTTTTTTTCEEEEECHHH
T ss_pred CeEEEEeCCCCCCCchH---HHHHHHHHHHHHhhccCCCCceEEEEehhh
Confidence 47888886654210000 0123345556654 68888887654
No 224
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=36.43 E-value=48 Score=24.42 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=7.6
Q ss_pred CCCcCEEEEc
Q 025645 59 LHKYDGFVIS 68 (250)
Q Consensus 59 l~~~dglIi~ 68 (250)
+..+|+||+.
T Consensus 61 i~~aD~ii~~ 70 (174)
T 3gfs_A 61 VTKADAIVLL 70 (174)
T ss_dssp HHHCSSEEEE
T ss_pred HHHCCEEEEE
Confidence 4568998887
No 225
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=36.08 E-value=39 Score=25.73 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=23.3
Q ss_pred ceEEEEecCCCC-hhHHHhhCCHH----HHHHHHHhcCC--CceEEEEee
Q 025645 7 KRYALFLAAKDS-DYVLKVYGGYF----NVFVAAFGEEG--ERWDLFRVV 49 (250)
Q Consensus 7 ~riail~~~~~~-~~~~~~~~~~~----~~~~~~l~~~g--~~~~~~~~~ 49 (250)
+||+||..++.. + ++.+ +.+.+.+++.| .+++++.+.
T Consensus 2 ~kilii~gS~r~~~------~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 2 SKLLVVKAHPLTKE------ESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp CEEEEEECCSSCTT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CeEEEEEecCCCCC------CCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 489999877652 1 1233 34455666666 888888876
No 226
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=35.96 E-value=1.1e+02 Score=25.27 Aligned_cols=13 Identities=8% Similarity=0.036 Sum_probs=10.4
Q ss_pred CCcCEEEEcCCCC
Q 025645 60 HKYDGFVISGSPY 72 (250)
Q Consensus 60 ~~~dglIi~Gg~~ 72 (250)
.++|.||+.-.+.
T Consensus 57 ~~~DvViiatp~~ 69 (320)
T 1f06_A 57 DDVDVLFLCMGSA 69 (320)
T ss_dssp TTCSEEEECSCTT
T ss_pred cCCCEEEEcCCcH
Confidence 5789999997664
No 227
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=35.89 E-value=69 Score=24.19 Aligned_cols=39 Identities=8% Similarity=0.047 Sum_probs=20.7
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEee
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVV 49 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 49 (250)
+||++|..++...-.... ..+.+.+.++ .|.+++++.+.
T Consensus 3 ~kilii~gS~r~~s~t~~---la~~~~~~~~-~~~~v~~~dl~ 41 (192)
T 3fvw_A 3 KRILFIVGSFSEGSFNRQ---LAKKAETIIG-DRAQVSYLSYD 41 (192)
T ss_dssp CEEEEEESCCSTTCHHHH---HHHHHHHHHT-TSSEEEECCCS
T ss_pred CEEEEEEcCCCCCCHHHH---HHHHHHHhcC-CCCEEEEEeCc
Confidence 589999877643211000 1223344454 57777776654
No 228
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=34.90 E-value=25 Score=26.15 Aligned_cols=103 Identities=10% Similarity=-0.040 Sum_probs=62.3
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHH-----------HHHHHhc-CCCceEEEEeecC-CCCCCCC---CCCcCEEEEcC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNV-----------FVAAFGE-EGERWDLFRVVEG-DFPDFND---LHKYDGFVISG 69 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~-----------~~~~l~~-~g~~~~~~~~~~~-~~~~~~~---l~~~dglIi~G 69 (250)
..+|++.+.+.+++.+...-..+.+. =.++|++ .|++++.+.-... .-|...+ -.++|.||.+-
T Consensus 11 ~g~V~lsv~D~dK~~~v~~ak~~~~ll~Gf~l~AT~gTa~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVInt~ 90 (152)
T 1b93_A 11 RKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGTTGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFW 90 (152)
T ss_dssp SCEEEEEECGGGHHHHHHHHHHTHHHHTTSEEEEETTHHHHHHHHHCCCCEEECCGGGTHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCEEEEEEehhhHHHHHHHHHHHHHHhCCCEEEEccHHHHHHHHHhCceeEEEEecCCCCCchHHHHHHCCCccEEEEcC
Confidence 35799998888887654332222222 1345666 7888887742211 0010000 14689999997
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHHH
Q 025645 70 SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 70 g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a 111 (250)
.|... . +...+...+.|.+...++|++=-=-++..+..+
T Consensus 91 ~pl~~-~--~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~a 129 (152)
T 1b93_A 91 DPLNA-V--PHDPDVKALLRLATVWNIPVATNVATADFIIQS 129 (152)
T ss_dssp CTTSC-C--TTHHHHHHHHHHHHHTTCCEESSHHHHHHHHTS
T ss_pred CcccC-C--cccccHHHHHHHHHHcCCCEEeCHHHHHHHHHH
Confidence 75442 1 113456677788999999998777777776654
No 229
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=34.55 E-value=68 Score=26.70 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=10.3
Q ss_pred ccccceEEEEecCC
Q 025645 3 LMEEKRYALFLAAK 16 (250)
Q Consensus 3 ~~~~~riail~~~~ 16 (250)
.++++||+|+.++.
T Consensus 10 ~~~~~rvgiiG~G~ 23 (354)
T 3q2i_A 10 TDRKIRFALVGCGR 23 (354)
T ss_dssp CSSCEEEEEECCST
T ss_pred CCCcceEEEEcCcH
Confidence 34567999998864
No 230
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=34.02 E-value=30 Score=26.25 Aligned_cols=16 Identities=6% Similarity=0.021 Sum_probs=8.4
Q ss_pred CCccccceEEEEecCC
Q 025645 1 MDLMEEKRYALFLAAK 16 (250)
Q Consensus 1 m~~~~~~riail~~~~ 16 (250)
|++...+||+|+..+.
T Consensus 1 ~~~~~~~kiliiy~S~ 16 (193)
T 3d7n_A 1 MTTNSSSNTVVVYHSG 16 (193)
T ss_dssp -----CCCEEEEECCS
T ss_pred CCCCCCCEEEEEEECC
Confidence 6666667899987654
No 231
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=33.98 E-value=74 Score=23.26 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=21.3
Q ss_pred CCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 57 NDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 57 ~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
.++.++|.||+... .-.. ..+ ..+..+++...-.++++.-+|
T Consensus 74 ~~l~~yd~iilG~P-~~~g-~~~--~~~~~fl~~~~l~gk~v~~f~ 115 (162)
T 3klb_A 74 FHPEKYEVLFVGFP-VWWY-IAP--TIINTFLESYDFAGKIVVPFA 115 (162)
T ss_dssp SCGGGCSEEEEEEE-CBTT-BCC--HHHHHHHHTSCCTTCEEEEEE
T ss_pred cChhhCCEEEEEcc-cccC-CCC--HHHHHHHHhcCCCCCEEEEEE
Confidence 45778999888643 2211 111 334455554322456655554
No 232
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=33.45 E-value=1e+02 Score=22.79 Aligned_cols=42 Identities=12% Similarity=0.001 Sum_probs=21.1
Q ss_pred CCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 57 NDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 57 ~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
.++.++|.||+... .-...- + ..+..+++...-.++++.-+|
T Consensus 83 ~~l~~yD~iilg~P-vy~g~~-~--~~~~~fl~~~~l~gk~v~~f~ 124 (171)
T 4ici_A 83 ENIGTYDVVFIGYP-IWWDLA-P--RIINTFIEGHSLKGKTVVPFA 124 (171)
T ss_dssp TTGGGCSEEEEEEE-CBTTBC-C--HHHHHHHHHSCCTTSEEEEEE
T ss_pred ccHhHCCEEEEecc-cccCCc-h--HHHHHHHHHcCCCcCEEEEEE
Confidence 45778999988643 211111 1 334555555422456544443
No 233
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=33.35 E-value=2e+02 Score=23.60 Aligned_cols=15 Identities=20% Similarity=0.129 Sum_probs=11.3
Q ss_pred CccccceEEEEecCC
Q 025645 2 DLMEEKRYALFLAAK 16 (250)
Q Consensus 2 ~~~~~~riail~~~~ 16 (250)
+.|.++||+|+.++.
T Consensus 21 ~~M~~~rvgiiG~G~ 35 (330)
T 4ew6_A 21 QSMSPINLAIVGVGK 35 (330)
T ss_dssp CCCCCEEEEEECCSH
T ss_pred ccCCCceEEEEecCH
Confidence 356678999998763
No 234
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=33.32 E-value=74 Score=29.55 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=36.5
Q ss_pred HHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEE
Q 025645 31 VFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLG 100 (250)
Q Consensus 31 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilG 100 (250)
.+.+.|.+.|+.++++.. ..+|++|+.||+|.-..-. +...+.++...+.|--++.
T Consensus 429 ~~y~aL~~~gi~vD~v~~-------~~dL~~Yklvv~P~~~~~~-------~~~~~~L~~yV~~GG~lv~ 484 (675)
T 3tty_A 429 KYYDALYKQNIQTDMISV-------EEDLSKYKVVIAPVMYMVK-------PGFAERVERFVAQGGTFVT 484 (675)
T ss_dssp HHHHHHHTTTCCEEEECT-------TSCCTTCSEEEETTCCBCC-------TTHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCceEEEecC-------cCCcccCCEEEEeccEecC-------HHHHHHHHHHHhcCCEEEE
Confidence 456789999999998862 2468899999999754322 1233445555555554443
No 235
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=32.73 E-value=27 Score=26.94 Aligned_cols=62 Identities=10% Similarity=-0.001 Sum_probs=32.4
Q ss_pred ceEEEEecCCCChhHH-HhhCCHHHHHHHHHhcCCCceEEEEeecCCCC--CCCCCCCcCEEEEc
Q 025645 7 KRYALFLAAKDSDYVL-KVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP--DFNDLHKYDGFVIS 68 (250)
Q Consensus 7 ~riail~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~l~~~dglIi~ 68 (250)
-||+||+..+....-. ..-....+.+.+.+++.|.+++++.+...+-. ..+.+..+|+||+.
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~ 77 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQ 77 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEE
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEE
Confidence 4799998776621100 00001223445566667999988887542100 01234567999887
No 236
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=32.15 E-value=88 Score=24.43 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=25.1
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHH-HHHhcCCcEEEEeh
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQ-TLDAMQKKVLGICF 103 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~-~~~~~~~PilGIC~ 103 (250)
+.+.|+|.++-||++... . .-.+ ...+ -+...++|++||+-
T Consensus 54 ~~dld~Iav~~GPGsfTg-l--Rig~-~~AkgLa~~~~iPl~gVst 95 (213)
T 3r6m_A 54 LQDLDALAFGRGPGSFTG-V--RIGI-GIAQGLAFGAELPMIGVST 95 (213)
T ss_dssp TTTCSEEEEEEESSCHHH-H--HHHH-HHHHHHHHHTTCCEEEEEH
T ss_pred HHHccEEEEecCCCchhh-H--HHHH-HHHHHHHHHhCCCEEEEcC
Confidence 356899999999987421 0 0111 1111 13456899999985
No 237
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=32.04 E-value=33 Score=27.03 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=43.2
Q ss_pred ceEEEEecCCCC----hhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC--CCCCCCCcCEEEEcCCCCCCCCCChh
Q 025645 7 KRYALFLAAKDS----DYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP--DFNDLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 7 ~riail~~~~~~----~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
+||+||...+.. ...... ..+.+.+.+++.|.+++++.+....-. ..+.+..+|+||+. .|.--+. .|
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~---L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~-~P~y~~~-~p- 99 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLT---LTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQ-MPAWWMG-EP- 99 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHH---HHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEE-EECBTTB-CC-
T ss_pred cceEEEEeCCCcccCCChHHHH---HHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEE-CChHhcc-CC-
Confidence 589999877642 111111 223455667778999998887642100 01235678999987 3322111 11
Q ss_pred HHHHHHHHHHHHh
Q 025645 81 ILKLCFMLQTLDA 93 (250)
Q Consensus 81 ~~~~~~~i~~~~~ 93 (250)
..+..++.++..
T Consensus 100 -~~lK~~iD~v~~ 111 (218)
T 3rpe_A 100 -WILKKYIDEVFT 111 (218)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHh
Confidence 244555655543
No 238
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=31.86 E-value=1e+02 Score=25.86 Aligned_cols=84 Identities=10% Similarity=-0.127 Sum_probs=44.9
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhc-CCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE-EGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKL 84 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~ 84 (250)
..||.++.++.... .. ..+...+++ .|..+.........+..+..+..-|.+|+-.-++.. ...
T Consensus 54 ~~~I~i~G~G~S~~--~a------~~~~~~l~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~t-------~e~ 118 (355)
T 2a3n_A 54 FSSLFFASVGGSLA--PM------MAINEFAKELTTLPVYVEQAAELIHKGNKRLNKDSVVITLSKSGDT-------KES 118 (355)
T ss_dssp CSCEEEEECGGGHH--HH------HHHHHHHHHHCCSCEEEEEHHHHHHHCCTTCCTTCEEEEECSSSCC-------HHH
T ss_pred CCEEEEEEccHHHH--HH------HHHHHHHHhhcCCeEEEcCcHHHHhhchhcCCCCCEEEEEeCCCCC-------HHH
Confidence 35778777664321 11 113345555 687776543211001111123334555554332222 466
Q ss_pred HHHHHHHHhcCCcEEEEehH
Q 025645 85 CFMLQTLDAMQKKVLGICFG 104 (250)
Q Consensus 85 ~~~i~~~~~~~~PilGIC~G 104 (250)
.+.++.+.+.|.++++||-.
T Consensus 119 ~~a~~~ak~~Ga~vi~IT~~ 138 (355)
T 2a3n_A 119 VAIAEWCKAQGIRVVAITKN 138 (355)
T ss_dssp HHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHCCCeEEEEECC
Confidence 77888888899999999874
No 239
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=31.79 E-value=92 Score=22.21 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=22.7
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEE
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLF 46 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 46 (250)
.+++|||+..+.+.. .+...+.+.|.+.|.++..+
T Consensus 13 ~p~~IavIGaS~~~g-------~~G~~~~~~L~~~G~~V~~v 47 (138)
T 1y81_A 13 EFRKIALVGASKNPA-------KYGNIILKDLLSKGFEVLPV 47 (138)
T ss_dssp -CCEEEEETCCSCTT-------SHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEEeecCCCC-------CHHHHHHHHHHHCCCEEEEe
Confidence 467899998766542 34555667788888864333
No 240
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=31.70 E-value=1.1e+02 Score=22.74 Aligned_cols=93 Identities=17% Similarity=0.224 Sum_probs=47.9
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCc---eEEEEeec-CCCCCC----CCCCCcCEEEEcCCCC--C
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGER---WDLFRVVE-GDFPDF----NDLHKYDGFVISGSPY--D 73 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---~~~~~~~~-~~~~~~----~~l~~~dglIi~Gg~~--~ 73 (250)
.+..||+|+...-..+ +.+. ...-..+.|.+.|.+ ++++++.. -+.|-. ..-.+||+||..|-.- .
T Consensus 9 ~~~~ri~IV~arfn~~-I~~~---Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~ 84 (157)
T 2obx_A 9 YETVRIAVVRARWHAD-IVDQ---CVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLGTAFVVNGG 84 (157)
T ss_dssp CCCEEEEEEEECTTHH-HHHH---HHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEEEEEECCCCS
T ss_pred CCCCEEEEEEeeCcHH-HHHH---HHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCC
Confidence 3567999998664432 1111 111223556666754 55665532 122210 0114699999998542 1
Q ss_pred CCCCChhH--HHHHHHHHHHHhcCCcE-EEE
Q 025645 74 AYGNDNWI--LKLCFMLQTLDAMQKKV-LGI 101 (250)
Q Consensus 74 ~~~~~~~~--~~~~~~i~~~~~~~~Pi-lGI 101 (250)
.+ -..++ .-...+++-.++.++|| +||
T Consensus 85 T~-Hfd~Va~~vs~Gl~~v~L~~~vPV~~GV 114 (157)
T 2obx_A 85 IY-RHEFVASAVIDGMMNVQLSTGVPVLSAV 114 (157)
T ss_dssp SB-CCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred Cc-HHHHHHHHHHHHHHHHHhhcCCCEEEEe
Confidence 11 11222 22355666677789995 453
No 241
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=31.49 E-value=73 Score=26.68 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=30.0
Q ss_pred EEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHH
Q 025645 64 GFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLC 109 (250)
Q Consensus 64 glIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla 109 (250)
||+-+||+.... -...+.+++.+...+.-++||-.|++-|.
T Consensus 6 ~IltsGGdapGm-----Naair~vv~~a~~~g~~v~Gi~~G~~GL~ 46 (320)
T 1pfk_A 6 GVLTSGGDAPGM-----NAAIRGVVRSALTEGLEVMGIYDGYLGLY 46 (320)
T ss_dssp EEEECSSCCTTH-----HHHHHHHHHHHHHTTCEEEEESTHHHHHH
T ss_pred EEEccCCCchhH-----HHHHHHHHHHHHHCCCEEEEEecChHHhc
Confidence 456667754332 24567777888778899999999999885
No 242
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=31.31 E-value=81 Score=26.37 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=30.6
Q ss_pred EEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHH
Q 025645 64 GFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCR 110 (250)
Q Consensus 64 glIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~ 110 (250)
||+-+||+.... -...+.+++.+...+.-++||-.|++-|..
T Consensus 5 ~IltsGGdapGm-----Naair~vv~~a~~~g~~v~Gi~~G~~GL~~ 46 (319)
T 1zxx_A 5 GILTSGGDAPGM-----NAAVRAVTRVAIANGLEVFGIRYGFAGLVA 46 (319)
T ss_dssp EEEECSSCCTTH-----HHHHHHHHHHHHTTTCEEEEECTHHHHHHH
T ss_pred EEEccCCCchhH-----HHHHHHHHHHHHHCCCEEEEEccChHHHcC
Confidence 466667754332 245677778887788999999999998864
No 243
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=30.92 E-value=51 Score=27.67 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=25.5
Q ss_pred CCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 60 HKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
..++|||+-| |.++.. ..+.+.++++.++++||.=+
T Consensus 240 ~g~~GiVle~~G~Gn~p------~~~~~~l~~a~~~Gi~VV~~ 276 (327)
T 1o7j_A 240 HGVKGIVYAGMGAGSVS------VRGIAGMRKALEKGVVVMRS 276 (327)
T ss_dssp TTCSEEEEEEBTTTBCC------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEeeECCCCCC------HHHHHHHHHHHHCCceEEEE
Confidence 3689999987 555543 45666778888888887643
No 244
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=30.73 E-value=48 Score=27.95 Aligned_cols=36 Identities=22% Similarity=0.138 Sum_probs=25.4
Q ss_pred CCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 60 HKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
.+++||||-| |.++.. ..+.+.++++.+.++||.=+
T Consensus 244 ~g~~GiVle~~G~Gn~p------~~~~~~l~~a~~~Gi~VV~~ 280 (334)
T 3nxk_A 244 HGTKGIVVAGSGAGSIH------KNQKDVLKELLKKGLKVVVS 280 (334)
T ss_dssp TTCCEEEEEEBTTTBCC------HHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCEEEEeeECCCCCc------HHHHHHHHHHHHCCCEEEEe
Confidence 4589999987 444443 35667778888888888754
No 245
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=30.72 E-value=51 Score=27.71 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=25.8
Q ss_pred CCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 60 HKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
..++|||+-| |.++.. ..+.+.++++.++++||.=+
T Consensus 241 ~g~~GiVle~~G~Gn~p------~~~~~~l~~a~~~Gi~VV~~ 277 (332)
T 2wlt_A 241 SHAKGVVIAGVGNGNVS------AGFLKAMQEASQMGVVIVRS 277 (332)
T ss_dssp TTCSEEEEEEBTTTBCC------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEeeECCCCCC------HHHHHHHHHHHHCCCEEEEE
Confidence 4689999997 555543 45667778888888888644
No 246
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=30.08 E-value=46 Score=24.47 Aligned_cols=37 Identities=5% Similarity=0.030 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcC
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISG 69 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~G 69 (250)
..+.+.+.+.|.+++++.+...+ ..++.++|.||+..
T Consensus 28 ~~ia~~l~~~g~~v~~~~~~~~~---~~~l~~~d~ii~g~ 64 (167)
T 1ykg_A 28 EALRDDLLAAKLNVKLVNAGDYK---FKQIASEKLLIVVT 64 (167)
T ss_dssp HHHHHHHHHHTCCCEEEEGGGCC---GGGGGGCSEEEEEE
T ss_pred HHHHHHHHHCCCceEEeehhhCC---HHHhccCCeEEEEE
Confidence 44556677778888887764322 23567789888864
No 247
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=29.98 E-value=54 Score=27.55 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=25.7
Q ss_pred CCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 60 HKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
..++|||+-| |.++.. ..+.+.++++.++++||.=+
T Consensus 238 ~g~~GiVle~~G~Gn~p------~~~~~~l~~a~~~gi~VV~~ 274 (330)
T 1wsa_A 238 AGAKGIIHAGMGNGNPF------PLTQNALEKAAKSGVVVARS 274 (330)
T ss_dssp TTCSEEEEEEBTTTBCC------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEeeECCCCCC------HHHHHHHHHHHHCCCEEEEE
Confidence 4689999997 555543 45667778888888988644
No 248
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=29.78 E-value=39 Score=24.70 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=26.7
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISG 69 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~G 69 (250)
|||+|+-.+.. .+.. .....+.+.+... .++++.+... +..++.++|.||+.-
T Consensus 2 mkilIiY~S~t-GnT~----~vA~~ia~~l~~~--~v~~~~~~~~---~~~~l~~~d~ii~g~ 54 (169)
T 1obo_A 2 KKIGLFYGTQT-GKTE----SVAEIIRDEFGND--VVTLHDVSQA---EVTDLNDYQYLIIGC 54 (169)
T ss_dssp CSEEEEECCSS-SHHH----HHHHHHHHHHCTT--TEEEEETTTC---CGGGGGGCSEEEEEE
T ss_pred CeEEEEEECCC-chHH----HHHHHHHHHhCcC--CcEEEEcccC---CHHHHhhCCEEEEEE
Confidence 57888764432 1111 0122334444332 5566654322 224577899998863
No 249
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=29.61 E-value=87 Score=24.51 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=27.1
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD 52 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 52 (250)
|||+||..++...-.... ..+.+.+.+++.|.+++++++...+
T Consensus 2 mkiLiI~gspr~~S~t~~---l~~~~~~~l~~~g~ev~~~dL~~~~ 44 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGS---LKNVAVDELSRQGCTVTVSDLYAMN 44 (228)
T ss_dssp CEEEEEECCSCTTSHHHH---HHHHHHHHHHHHTCEEEEEETTTTT
T ss_pred CEEEEEEeCCCCCCHHHH---HHHHHHHHHHHCCCEEEEEEhhhcC
Confidence 689999877664311111 2234556677779999998876543
No 250
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=29.61 E-value=1.7e+02 Score=23.94 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=9.6
Q ss_pred cccceEEEEecCCC
Q 025645 4 MEEKRYALFLAAKD 17 (250)
Q Consensus 4 ~~~~riail~~~~~ 17 (250)
|.++||+|+.++.-
T Consensus 3 m~~~rigiiG~G~i 16 (329)
T 3evn_A 3 LSKVRYGVVSTAKV 16 (329)
T ss_dssp --CEEEEEEBCCTT
T ss_pred CCceEEEEEechHH
Confidence 55679999988753
No 251
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=29.31 E-value=56 Score=27.37 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=25.7
Q ss_pred CCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 60 HKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
..++|||+-| |.++.. ..+.+.++++.++++||.=+
T Consensus 234 ~g~~GiVl~~~G~Gn~p------~~~~~~l~~a~~~gi~VV~~ 270 (326)
T 1nns_A 234 AGYDGIVSAGVGNGNLY------KSVFDTLATAAKTGTAVVRS 270 (326)
T ss_dssp TTCSEEEEEEBTTTBCC------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEeeECCCCCC------HHHHHHHHHHHHCCCEEEEE
Confidence 4689999987 555543 45667778888888888644
No 252
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=29.15 E-value=85 Score=25.08 Aligned_cols=55 Identities=16% Similarity=0.356 Sum_probs=35.4
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC--CCC------CCcCEEEEcCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF--NDL------HKYDGFVISGS 70 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~l------~~~dglIi~Gg 70 (250)
..+||+++-.....+ .+.+.|++.|+++..+.++....+.. ..+ ..+|.|+++-+
T Consensus 140 ~g~~vLi~rg~~~r~-----------~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~ 202 (269)
T 3re1_A 140 PGSRVLIMRGNEGRE-----------LLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSG 202 (269)
T ss_dssp SSCEEEEEECSSCCC-----------HHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSH
T ss_pred CCCEEEEEccCccHH-----------HHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCH
Confidence 456888876544443 25688999999988777665433221 111 36899998854
No 253
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=29.14 E-value=87 Score=24.03 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=26.8
Q ss_pred ceEEEEecCCC--ChhHHHhhCCHHHHHHHHHhcC--CCceEEEEeecCCCC
Q 025645 7 KRYALFLAAKD--SDYVLKVYGGYFNVFVAAFGEE--GERWDLFRVVEGDFP 54 (250)
Q Consensus 7 ~riail~~~~~--~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~~~~ 54 (250)
+||++|..++. ..-.... ..+.+.+.+++. |.+++++++...++|
T Consensus 5 ~kiLiI~gSpr~~~~S~s~~---l~~~~~~~~~~~~~g~ev~~~dL~~~~~P 53 (211)
T 3p0r_A 5 TKVLFVKANNRPAEQAVSVK---LYEAFLASYKEAHPNDTVVELDLYKEELP 53 (211)
T ss_dssp CEEEEEECCCSCTTTCHHHH---HHHHHHHHHHHHCTTSEEEEEEGGGSCCC
T ss_pred CEEEEEEeCCCCCCCCHHHH---HHHHHHHHHHHhCCCCeEEEEECCCCCCC
Confidence 68999987765 2211100 123445556655 889988887765554
No 254
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=28.87 E-value=20 Score=28.92 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=24.7
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
+++|.+|..||-+ .+.+.++.+.. ++|++||=.|.
T Consensus 40 ~~~D~vv~~GGDG----------Tll~~a~~~~~-~~PilGIn~G~ 74 (258)
T 1yt5_A 40 VTADLIVVVGGDG----------TVLKAAKKAAD-GTPMVGFKAGR 74 (258)
T ss_dssp BCCSEEEEEECHH----------HHHHHHTTBCT-TCEEEEEESSS
T ss_pred CCCCEEEEEeCcH----------HHHHHHHHhCC-CCCEEEEECCC
Confidence 4689999999832 23444555545 88999998774
No 255
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=28.63 E-value=1.1e+02 Score=22.92 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=34.9
Q ss_pred HHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEeh
Q 025645 32 FVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICF 103 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~ 103 (250)
+...|...|..+..+............+..=|.+|+-..++.. ....+.++.+.+.+.|+++|+-
T Consensus 63 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS~sG~t-------~~~~~~~~~ak~~g~~vi~IT~ 127 (201)
T 3fxa_A 63 LVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNT-------GELLNLIPACKTKGSTLIGVTE 127 (201)
T ss_dssp HHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEEECSSSCC-------HHHHTTHHHHHHHTCEEEEEES
T ss_pred HHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEEEeCCCCC-------HHHHHHHHHHHHcCCeEEEEEC
Confidence 4556777788776543111000011123333555554322221 4566777888888999999874
No 256
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=28.43 E-value=1.5e+02 Score=24.45 Aligned_cols=80 Identities=14% Similarity=0.001 Sum_probs=42.4
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-C-----CCCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-D-----LHKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-~-----l~~~dglIi~Gg~~~~~~~~~ 79 (250)
.+||++|..+. .+-. ...+.|.+.+++.|.++...........+.. . -.++|+|++.+..
T Consensus 143 ~~~iaii~~~~--~~g~----~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~-------- 208 (392)
T 3lkb_A 143 GAKVALVVHPS--PFGR----APVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVA-------- 208 (392)
T ss_dssp TCEEEEEECSS--HHHH----TTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCH--------
T ss_pred CCEEEEEEeCC--chhh----hHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEecCc--------
Confidence 46899997432 2211 1234567788888987654332221111100 0 1357888876631
Q ss_pred hHHHHHHHHHHHHhc--CCcEEEE
Q 025645 80 WILKLCFMLQTLDAM--QKKVLGI 101 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~--~~PilGI 101 (250)
.....+++.+.+. ..|++|.
T Consensus 209 --~~a~~~~~~~~~~g~~~~~~~~ 230 (392)
T 3lkb_A 209 --GPVANILKDAKRLGLKMRHLGA 230 (392)
T ss_dssp --HHHHHHHHHHHHTTCCCEEEEC
T ss_pred --chHHHHHHHHHHcCCCceEEEe
Confidence 2334556666554 3577765
No 257
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=28.39 E-value=90 Score=25.44 Aligned_cols=59 Identities=8% Similarity=0.138 Sum_probs=34.1
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCC--CCcCEEEEc
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDL--HKYDGFVIS 68 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l--~~~dglIi~ 68 (250)
+.+||+||.-+...+.-.... -...+.+.|++.|.++..+... +.. ...+ .++|.++..
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~--s~~~v~~al~~~g~~v~~i~~~--~~~-~~~l~~~~~D~v~~~ 72 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLT--SGRLVLQGLRDAGIDAHPFDPA--ERP-LSALKDEGFVRAFNA 72 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHH--HHHHHHHHHHHTTCEEEEECTT--TSC-TTHHHHTTCCEEEEC
T ss_pred hcceEEEEECCCCCcceeeHH--HHHHHHHHHHHCCCEEEEEeCC--Cch-HHHhhhcCCCEEEEc
Confidence 457899997665544322111 1245678899999998877622 110 0111 357877764
No 258
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=28.28 E-value=42 Score=27.71 Aligned_cols=60 Identities=7% Similarity=-0.006 Sum_probs=34.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC----CC--CCCCcCEEEEcC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD----FN--DLHKYDGFVISG 69 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~----~~--~l~~~dglIi~G 69 (250)
...|+++..+...++... +..-+.+.+++.|..+.+.....++... .. .-.++||||+.+
T Consensus 61 ~~~Igvi~~~~~~~~~~~----~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 61 SLLIGVATSSLALHAPSQ----IVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp -CEEEEEESCTTSHHHHH----HHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCEEEEEeCCCCcccHHH----HHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEec
Confidence 357999986655554322 2344567778889887765432211000 00 015689999975
No 259
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=28.07 E-value=87 Score=24.63 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHH-HHhcCCcEEEEehHHHHH
Q 025645 30 NVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQT-LDAMQKKVLGICFGHQVL 108 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~-~~~~~~PilGIC~G~Qll 108 (250)
.++.+.|++.|.+ +.++|+|.++=||++... .... ....+. +...++|+.||+--.-+.
T Consensus 40 ~~i~~~L~~a~~~----------------~~did~Iav~~GPGsftg---lRig-~~~ak~la~~~~~Pl~~V~~l~a~a 99 (231)
T 2gel_A 40 PMVQEILAASGAS----------------LNEIDALAFGRGPGSFTG---VRIG-IGIAQGLALGANLPMIGVSTLATMA 99 (231)
T ss_dssp HHHHHHHHHTTCC----------------GGGCSEEEEECCSSCHHH---HHHH-HHHHHHHHHTTTCCEEEECHHHHHH
T ss_pred HHHHHHHHHcCCC----------------HHHCCEEEEEcCCChhHh---HHHH-HHHHHHHHHHcCCCEEEeccHHHHH
Confidence 3455677777653 346899999999976421 1111 122222 345689999999644333
No 260
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=27.91 E-value=38 Score=23.31 Aligned_cols=36 Identities=17% Similarity=0.039 Sum_probs=18.8
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEE
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLF 46 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 46 (250)
|.-+..+||+|+..+.. ....+...|++.|.++...
T Consensus 1 M~~~~~~~ilivdd~~~----------~~~~l~~~L~~~g~~v~~~ 36 (136)
T 3kto_A 1 MSLNHHPIIYLVDHQKD----------ARAALSKLLSPLDVTIQCF 36 (136)
T ss_dssp ------CEEEEECSCHH----------HHHHHHHHHTTSSSEEEEE
T ss_pred CCCCCCCeEEEEcCCHH----------HHHHHHHHHHHCCcEEEEe
Confidence 43334467887754322 2345678888888766543
No 261
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=27.61 E-value=19 Score=28.17 Aligned_cols=61 Identities=20% Similarity=0.116 Sum_probs=35.4
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC---CC--CCCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD---FN--DLHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~~--~l~~~dglIi~Gg 70 (250)
+.+|+++..+...++... +..-+.+.+++.|..+.+.....+.... .. .-.++||||+.+.
T Consensus 2 s~~Igvi~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 2 DKVVAIIVTRLDSLSENL----AVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CCEEEEEESCTTCHHHHH----HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCEEEEEeCCCCCccHHH----HHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 467999987666655332 2344567778889887765422110000 00 0157899999874
No 262
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=27.57 E-value=31 Score=27.41 Aligned_cols=56 Identities=20% Similarity=0.048 Sum_probs=30.5
Q ss_pred ccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCC-------C-CCcCEEEEcCC
Q 025645 3 LMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFND-------L-HKYDGFVISGS 70 (250)
Q Consensus 3 ~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-------l-~~~dglIi~Gg 70 (250)
++..+||+|.- +.. ...+.+.|++.|.++..+.+..-...+... + .++|.||++-.
T Consensus 5 ~l~g~~vlvtr--~~~----------~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~ 68 (261)
T 1wcw_A 5 EEDAVRVAYAG--LRR----------KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTG 68 (261)
T ss_dssp ---CCEEEECC--STT----------HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCH
T ss_pred CCCCCEEEEeC--CCc----------hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCH
Confidence 44567777653 221 133678999999887654332221111111 3 36999999954
No 263
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=27.47 E-value=1.9e+02 Score=21.41 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=52.5
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCC-C---ceEEEEeecC-CCCCC----CCCCCcCEEEEcCCC--CC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEG-E---RWDLFRVVEG-DFPDF----NDLHKYDGFVISGSP--YD 73 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~---~~~~~~~~~~-~~~~~----~~l~~~dglIi~Gg~--~~ 73 (250)
..+||+|+...-..+ +.+. ...-..+.|.+.| . +++++++... +.|-. ..-.+||++|..|-. +.
T Consensus 11 ~~~ri~IV~arfn~~-I~~~---Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~ 86 (156)
T 3nq4_A 11 PDARVAITIARFNQF-INDS---LLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGG 86 (156)
T ss_dssp TTCCEEEEEESTTHH-HHHH---HHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEEEEEEECCS
T ss_pred CCCEEEEEEeeCcHH-HHHH---HHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCC
Confidence 457999998654432 2111 1122345677778 4 6777775421 22210 011469999999843 11
Q ss_pred CCCCChhH--HHHHHHHHHHHhcCCcE-EEEe---hHHHHHHHH
Q 025645 74 AYGNDNWI--LKLCFMLQTLDAMQKKV-LGIC---FGHQVLCRA 111 (250)
Q Consensus 74 ~~~~~~~~--~~~~~~i~~~~~~~~Pi-lGIC---~G~Qlla~a 111 (250)
.+ ...++ .-...+++-.++.++|| +||- -=.|.+.++
T Consensus 87 T~-Hfd~Va~~v~~Gl~~v~L~~~vPV~~GVLT~~~~eQA~~Ra 129 (156)
T 3nq4_A 87 TA-HFEYVAGGASNGLASVAQDSGVPVAFGVLTTESIEQAIERA 129 (156)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEESCHHHHHHHB
T ss_pred ch-HHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCHHHHHHHh
Confidence 11 11222 22345566667789995 4442 234555544
No 264
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=27.47 E-value=90 Score=24.25 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=33.3
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-------CCCCcCEEEEcC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-------DLHKYDGFVISG 69 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-------~l~~~dglIi~G 69 (250)
.+||+++-.....+. +.+.|++.|+++..+.++....+... ....+|.|+++-
T Consensus 110 ~~~vL~~rg~~~~~~-----------L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~~~~d~v~ftS 169 (229)
T 3p9z_A 110 KKSVLYLRAKEIVSS-----------LDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKPKEKSILIFTA 169 (229)
T ss_dssp TCEEEEEEESSCSSC-----------HHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSCCTTCEEEECS
T ss_pred CCEEEEECCccchHH-----------HHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhcCCCeEEEEEC
Confidence 467877765444432 56789999999887666654322211 124688888874
No 265
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=26.80 E-value=16 Score=29.52 Aligned_cols=62 Identities=8% Similarity=0.096 Sum_probs=36.0
Q ss_pred ccceEEEEecCCCChhHHHhhC-CHHHHHHHHHhcCCCceEEEEeecCCCCCCC-----CCCCcCEEEEcCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYG-GYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-----DLHKYDGFVISGS 70 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-----~l~~~dglIi~Gg 70 (250)
++.+|+++..+...++ |. .+..-+.+.+++.|..+.+.....+...... .-.++||||+.+.
T Consensus 12 ~s~~Igvi~~~~~~~~----~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 12 RSNTFGIITDYVSTTP----YSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp CCCEEEEEESSTTTCC----SCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCEEEEEeCCCcCcc----cHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 3467999986655443 22 3445567788888998877653211000000 0146899998764
No 266
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=26.53 E-value=71 Score=22.70 Aligned_cols=40 Identities=8% Similarity=0.028 Sum_probs=27.0
Q ss_pred CcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHHHHHHH
Q 025645 61 KYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGHQVLCR 110 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~ 110 (250)
+.-+||++||..-. +. +++.+.+.++||+-+=...--.+.
T Consensus 74 ~~~~iIlt~g~~~~-------~~---i~~~A~~~~ipvl~t~~~T~~~~~ 113 (139)
T 2ioj_A 74 NVRCLILTGNLEPV-------QL---VLTKAEERGVPVILTGHDTLTAVS 113 (139)
T ss_dssp TEEEEEEETTCCCC-------HH---HHHHHHHHTCCEEECSSCHHHHHH
T ss_pred CCcEEEEcCCCCCC-------HH---HHHHHHHCCCeEEEECCCHHHHHH
Confidence 67899999984321 22 345556779999988876655444
No 267
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=26.10 E-value=1.8e+02 Score=23.74 Aligned_cols=81 Identities=11% Similarity=-0.121 Sum_probs=41.9
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC-C---C--CCcCEEEEcCCCCCCCCCCh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN-D---L--HKYDGFVISGSPYDAYGNDN 79 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-~---l--~~~dglIi~Gg~~~~~~~~~ 79 (250)
.+||++|..+. ..-.. ..+.|.+.+++.|.++...........+.. . + .++|+|++.+..
T Consensus 151 ~~~ia~i~~~~--~~~~~----~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~-------- 216 (375)
T 4evq_A 151 LKKAVTVTWKY--AAGEE----MVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSG-------- 216 (375)
T ss_dssp CCEEEEEEESS--HHHHH----HHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCT--------
T ss_pred CcEEEEEecCc--hHHHH----HHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCc--------
Confidence 36899996432 22111 224567888889987643322221111100 0 1 257888886532
Q ss_pred hHHHHHHHHHHHHhcC--CcEEEEe
Q 025645 80 WILKLCFMLQTLDAMQ--KKVLGIC 102 (250)
Q Consensus 80 ~~~~~~~~i~~~~~~~--~PilGIC 102 (250)
.....+++.+.+.+ +|++|.-
T Consensus 217 --~~a~~~~~~~~~~g~~vp~~~~~ 239 (375)
T 4evq_A 217 --GGALKFIKDYAAANLGIPLWGPG 239 (375)
T ss_dssp --HHHHHHHHHHHHTTCCCCEEEEG
T ss_pred --chHHHHHHHHHHcCCCceEEecC
Confidence 12334555555544 6888764
No 268
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=25.97 E-value=74 Score=25.09 Aligned_cols=55 Identities=13% Similarity=0.358 Sum_probs=35.5
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC--C------CCCcCEEEEcCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN--D------LHKYDGFVISGS 70 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~--~------l~~~dglIi~Gg 70 (250)
..+||+++-.+...+ .+.+.|++.|+++..+.++....+... . ...+|.|+++-+
T Consensus 132 ~~~~vL~~rg~~~r~-----------~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~ 194 (254)
T 4es6_A 132 HDPKVLIMRGEGGRE-----------FLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSG 194 (254)
T ss_dssp SSCEEEEEECSSCCC-----------HHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCSH
T ss_pred CCCEEEEEcCCccHH-----------HHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCH
Confidence 456888876544443 256789999999988777665433221 1 136788888743
No 269
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=25.90 E-value=48 Score=24.63 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=53.3
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCC---ceEEEEeec-CCCCCC----CCCCCcCEEEEcCCC--CCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGE---RWDLFRVVE-GDFPDF----NDLHKYDGFVISGSP--YDA 74 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~-~~~~~~----~~l~~~dglIi~Gg~--~~~ 74 (250)
+..||+|+...-..+ +.+. ...-..+.|.+.|. +++++++.. -+.|-. ..-.+||++|..|-. +..
T Consensus 11 ~~~ri~IV~arfn~~-I~~~---Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~VIrG~T 86 (154)
T 1hqk_A 11 EGLRFGIVASRFNHA-LVDR---LVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGAT 86 (154)
T ss_dssp TTCCEEEEEECTTHH-HHHH---HHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEEECCSS
T ss_pred CCCEEEEEEeeCcHH-HHHH---HHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCc
Confidence 357999998664432 1111 11223456777785 456676532 232210 112469999999843 111
Q ss_pred CCCChhH--HHHHHHHHHHHhcCCcE-EE--Eeh-HHHHHHHH
Q 025645 75 YGNDNWI--LKLCFMLQTLDAMQKKV-LG--ICF-GHQVLCRA 111 (250)
Q Consensus 75 ~~~~~~~--~~~~~~i~~~~~~~~Pi-lG--IC~-G~Qlla~a 111 (250)
+ ...++ .-...+++-.++.++|| +| .|- =.|.+.++
T Consensus 87 ~-Hfd~Va~~vs~gl~~v~l~~~vPV~~GVLT~~~~eQA~~Ra 128 (154)
T 1hqk_A 87 P-HFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERA 128 (154)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHTSCEEEEEEEESSHHHHHHHE
T ss_pred h-HHHHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHHh
Confidence 1 11222 22345666677789995 56 344 45666555
No 270
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=25.87 E-value=1.2e+02 Score=22.44 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=52.5
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCC---ceEEEEeec-CCCCCC----CCCCCcCEEEEcCCC--CCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGE---RWDLFRVVE-GDFPDF----NDLHKYDGFVISGSP--YDA 74 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~-~~~~~~----~~l~~~dglIi~Gg~--~~~ 74 (250)
+..||+|+...-..+ +.+. ...-..+.|.+.|. +++++++.. -+.|-. ..-.+||++|..|-. +..
T Consensus 11 ~~~ri~IV~arfn~~-I~~~---Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T 86 (154)
T 1rvv_A 11 TGLKIGIVVGRFNDF-ITSK---LLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGAT 86 (154)
T ss_dssp TTCCEEEEEESTTHH-HHHH---HHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEEECCSS
T ss_pred CCCEEEEEEEeCcHH-HHHH---HHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCc
Confidence 357999998664432 1111 11223456777785 456666532 132210 012469999999843 111
Q ss_pred CCCChhH--HHHHHHHHHHHhcCCcE-EE--Eeh-HHHHHHHH
Q 025645 75 YGNDNWI--LKLCFMLQTLDAMQKKV-LG--ICF-GHQVLCRA 111 (250)
Q Consensus 75 ~~~~~~~--~~~~~~i~~~~~~~~Pi-lG--IC~-G~Qlla~a 111 (250)
+ ...++ .-...+++-.++.++|| +| .|- =.|.+.++
T Consensus 87 ~-Hfd~V~~~vs~Gl~~v~l~~~vPV~~GVLT~~~~eQA~~Ra 128 (154)
T 1rvv_A 87 T-HYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERA 128 (154)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSHHHHHHTE
T ss_pred h-HHHHHHHHHHHHHHHHHhhhCCCEEEEecCCCCHHHHHHHh
Confidence 1 11222 22345666677789995 56 343 44555544
No 271
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=25.71 E-value=70 Score=21.74 Aligned_cols=38 Identities=0% Similarity=-0.171 Sum_probs=19.5
Q ss_pred HHHHHHHhcCC-CceEEEEeecCCCCCCCCCCCcCEEEEc
Q 025645 30 NVFVAAFGEEG-ERWDLFRVVEGDFPDFNDLHKYDGFVIS 68 (250)
Q Consensus 30 ~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~l~~~dglIi~ 68 (250)
..+...|++.| .++....-.. +.-..-.-..+|.||+-
T Consensus 28 ~~l~~~L~~~g~~~v~~~~~~~-~a~~~l~~~~~dlvi~D 66 (135)
T 3snk_A 28 RDVATRLDALAIYDVRVSETDD-FLKGPPADTRPGIVILD 66 (135)
T ss_dssp HHHHHHHHHTSSEEEEEECGGG-GGGCCCTTCCCSEEEEE
T ss_pred HHHHHHHhhcCCeEEEEeccHH-HHHHHHhccCCCEEEEe
Confidence 45677888888 7665432111 11111112357887774
No 272
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=25.62 E-value=1e+02 Score=27.15 Aligned_cols=55 Identities=9% Similarity=0.066 Sum_probs=31.7
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC-------------C-CCCCCCCCcCEEEEcCCC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD-------------F-PDFNDLHKYDGFVISGSP 71 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-------------~-~~~~~l~~~dglIi~Gg~ 71 (250)
+||.|+..+..- ...++++|.+.|.+|...+..... . ..++.+.++|.||++.|-
T Consensus 23 ~~v~viGiG~sG----------~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi 91 (494)
T 4hv4_A 23 RHIHFVGIGGAG----------MGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAI 91 (494)
T ss_dssp CEEEEETTTSTT----------HHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTS
T ss_pred CEEEEEEEcHhh----------HHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCC
Confidence 578887654321 112467888888887665432110 0 122346678999998763
No 273
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=25.47 E-value=1.2e+02 Score=25.26 Aligned_cols=12 Identities=0% Similarity=0.044 Sum_probs=9.5
Q ss_pred cccceEEEEecC
Q 025645 4 MEEKRYALFLAA 15 (250)
Q Consensus 4 ~~~~riail~~~ 15 (250)
|.++||+|+.++
T Consensus 3 m~~~~vgiiG~G 14 (359)
T 3e18_A 3 LKKYQLVIVGYG 14 (359)
T ss_dssp CCCEEEEEECCS
T ss_pred CCcCcEEEECcC
Confidence 566799999875
No 274
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=25.41 E-value=39 Score=23.25 Aligned_cols=90 Identities=11% Similarity=0.086 Sum_probs=40.5
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCCCCCCCCCChh
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
|..+..+||+|+..+.. ....+...|++.|.++..+.-.. +.-..-.-..+|.||+-=.-. +...
T Consensus 1 M~~~~~~~iLivdd~~~----------~~~~l~~~l~~~g~~v~~~~~~~-~a~~~l~~~~~dlvi~d~~l~---~~~g- 65 (140)
T 3grc_A 1 MSLAPRPRILICEDDPD----------IARLLNLMLEKGGFDSDMVHSAA-QALEQVARRPYAAMTVDLNLP---DQDG- 65 (140)
T ss_dssp ----CCSEEEEECSCHH----------HHHHHHHHHHHTTCEEEEECSHH-HHHHHHHHSCCSEEEECSCCS---SSCH-
T ss_pred CCCCCCCCEEEEcCCHH----------HHHHHHHHHHHCCCeEEEECCHH-HHHHHHHhCCCCEEEEeCCCC---CCCH-
Confidence 55555678888854332 22446778888888754432110 000000013478777742211 1111
Q ss_pred HHHHHHHHHHH-HhcCCcEEEEehHHH
Q 025645 81 ILKLCFMLQTL-DAMQKKVLGICFGHQ 106 (250)
Q Consensus 81 ~~~~~~~i~~~-~~~~~PilGIC~G~Q 106 (250)
..+.+.++.. ...+.|++-+.-...
T Consensus 66 -~~~~~~l~~~~~~~~~~ii~~s~~~~ 91 (140)
T 3grc_A 66 -VSLIRALRRDSRTRDLAIVVVSANAR 91 (140)
T ss_dssp -HHHHHHHHTSGGGTTCEEEEECTTHH
T ss_pred -HHHHHHHHhCcccCCCCEEEEecCCC
Confidence 1222333321 224689888775543
No 275
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=25.24 E-value=67 Score=25.96 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=24.5
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
+..+|.||+..-.. ....|+++...++|+.|+|
T Consensus 149 f~~PdlliV~Dp~~-----------e~~AI~EA~~lgIPvIalv 181 (253)
T 3bch_A 149 FREPRLLVVTDPRA-----------DHQPLTEASYVNLPTIALC 181 (253)
T ss_dssp TCSCSEEEESCTTT-----------THHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEEECCCc-----------cchHHHHHHHhCCCEEEEE
Confidence 45689999884311 1346788888999999999
No 276
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=25.22 E-value=77 Score=25.74 Aligned_cols=16 Identities=6% Similarity=-0.164 Sum_probs=11.4
Q ss_pred CC-ccccceEEEEecCC
Q 025645 1 MD-LMEEKRYALFLAAK 16 (250)
Q Consensus 1 m~-~~~~~riail~~~~ 16 (250)
|. ++.++||+|+.++.
T Consensus 1 M~~~~~~~rvgiIG~G~ 17 (294)
T 1lc0_A 1 MITNSGKFGVVVVGVGR 17 (294)
T ss_dssp CCCCCCSEEEEEECCSH
T ss_pred CCCCCCcceEEEEEEcH
Confidence 64 45567999998763
No 277
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=25.22 E-value=1.8e+02 Score=24.17 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=10.1
Q ss_pred ccceEEEEecCCCC
Q 025645 5 EEKRYALFLAAKDS 18 (250)
Q Consensus 5 ~~~riail~~~~~~ 18 (250)
.++||||+.++...
T Consensus 25 ~~irvgiiG~G~~~ 38 (361)
T 3u3x_A 25 DELRFAAVGLNHNH 38 (361)
T ss_dssp -CCEEEEECCCSTT
T ss_pred cCcEEEEECcCHHH
Confidence 35699999987543
No 278
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=25.12 E-value=33 Score=29.60 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=24.8
Q ss_pred CcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCC-cEEEEehHHH
Q 025645 61 KYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQK-KVLGICFGHQ 106 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~-PilGIC~G~Q 106 (250)
++|.+|..||-+ .+....+.+...++ ||+||=.|+-
T Consensus 114 ~~DlVIvlGGDG----------TlL~aa~~~~~~~vpPiLGIN~G~l 150 (388)
T 3afo_A 114 RTDLLVTLGGDG----------TILHGVSMFGNTQVPPVLAFALGTL 150 (388)
T ss_dssp HCSEEEEEESHH----------HHHHHHHTTTTSCCCCEEEEECSSC
T ss_pred CCCEEEEEeCcH----------HHHHHHHHhcccCCCeEEEEECCCc
Confidence 579999999832 33444455545577 8999988843
No 279
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=24.98 E-value=61 Score=24.89 Aligned_cols=41 Identities=12% Similarity=-0.077 Sum_probs=29.7
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHH-hcCCcEEEEehH
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLD-AMQKKVLGICFG 104 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~-~~~~PilGIC~G 104 (250)
+...+.+|+--|....+. .|+ ...|+.+. +.++||+||=.+
T Consensus 77 I~~Sk~vIllIs~~T~~s--~~v---~wEIe~Ai~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 77 LDNSKNIILFLSSITANS--RAL---REEMNYGIGTKGLPVIVIYPD 118 (189)
T ss_dssp HHTEEEEEEECCTTCCCC--HHH---HHHHHHHTTTTCCCEEEEETT
T ss_pred HHhcCcEEEEEecCcccc--chh---HHHHHHHHHhcCCcEEEEECC
Confidence 346788888888766543 243 34677788 889999999877
No 280
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=24.94 E-value=2.1e+02 Score=21.14 Aligned_cols=44 Identities=7% Similarity=-0.010 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCCceEEEEeec-CCCCC--CCCCCCcCEEEEcCCCCC
Q 025645 30 NVFVAAFGEEGERWDLFRVVE-GDFPD--FNDLHKYDGFVISGSPYD 73 (250)
Q Consensus 30 ~~~~~~l~~~g~~~~~~~~~~-~~~~~--~~~l~~~dglIi~Gg~~~ 73 (250)
..+.+...+.|.+++.+-... ++..+ -+...++|||||=.|...
T Consensus 39 ~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~T 85 (153)
T 3lwz_A 39 SQLEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFT 85 (153)
T ss_dssp HHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGG
T ss_pred HHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccce
Confidence 344455566787776654211 01000 001246899999887654
No 281
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=24.85 E-value=1.7e+02 Score=23.86 Aligned_cols=33 Identities=3% Similarity=-0.067 Sum_probs=20.3
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceE
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWD 44 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 44 (250)
.+||++|..+. .+-.. ....|.+.+++.|.++.
T Consensus 141 ~~~iaii~~~~--~~g~~----~~~~~~~~~~~~G~~v~ 173 (364)
T 3lop_A 141 VTRIGVLYQED--ALGKE----AITGVERTLKAHALAIT 173 (364)
T ss_dssp CCCEEEEEETT--HHHHH----HHHHHHHHHHTTTCCCS
T ss_pred CceEEEEEeCc--hhhHH----HHHHHHHHHHHcCCcEE
Confidence 36899996543 22111 23456788888888764
No 282
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=24.82 E-value=15 Score=30.70 Aligned_cols=85 Identities=9% Similarity=0.031 Sum_probs=43.5
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC-----CCCCCcCEEEEcCCCCCCCCCChh
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF-----NDLHKYDGFVISGSPYDAYGNDNW 80 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-----~~l~~~dglIi~Gg~~~~~~~~~~ 80 (250)
.+|++||..+. .+-.. ..+.|.+.+++.|.++.-...+... .+. ....++|+|+++|....
T Consensus 122 ~k~vail~~~~--~yG~~----~~~~F~~~~~~~Gg~vv~~~~y~~~-~d~~~~l~~i~~~pDaV~~~~~~~~------- 187 (325)
T 2h4a_A 122 VRNPLVAMPQN--DLGQR----VGNAFNVRWQQLAGTDANIRYYNLP-ADVTYFVQENNSNTTALYAVASPTE------- 187 (325)
T ss_dssp CCSCEEEEESS--HHHHH----HHHHHHHHHHHHHSSCCEEEEESST-THHHHHHHHSTTCCCEEEECCCHHH-------
T ss_pred CCeEEEEEcCC--cHHHH----HHHHHHHHHHHcCCCcceeEecCCH-HHHHHHHHhcCCCCCEEEEeCCHHH-------
Confidence 36789987543 22121 2345677777777766544333221 110 01257999999875311
Q ss_pred HHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 81 ILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 81 ~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
...+...++.. ..+.|++|.-.-.
T Consensus 188 ~~~i~~~~~~~-g~~~pl~~~~~~~ 211 (325)
T 2h4a_A 188 LAEXKGYLTNI-VPNLAIYASSRAS 211 (325)
T ss_dssp HHHHHHHHTTT-CTTCEEEECGGGC
T ss_pred HhhhhhhHhhc-CCCCCEEEecccc
Confidence 11112222211 3578999985433
No 283
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=24.71 E-value=65 Score=23.78 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=14.4
Q ss_pred ceEEEEeecCCCCCCCCCCCcCEEEEcC
Q 025645 42 RWDLFRVVEGDFPDFNDLHKYDGFVISG 69 (250)
Q Consensus 42 ~~~~~~~~~~~~~~~~~l~~~dglIi~G 69 (250)
.++++.+... ...++.++|.||+..
T Consensus 29 ~v~i~~~~~~---~~~~l~~~d~ii~g~ 53 (175)
T 1ag9_A 29 VADVHDIAKS---SKEDLEAYDILLLGI 53 (175)
T ss_dssp TEEEEEGGGC---CHHHHHTCSEEEEEC
T ss_pred ceEEEEcccC---ChhHhhhCCEEEEEE
Confidence 4555554331 123466789888864
No 284
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=24.65 E-value=1.7e+02 Score=19.96 Aligned_cols=56 Identities=2% Similarity=-0.056 Sum_probs=31.0
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcC
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISG 69 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~G 69 (250)
+|| +++|+.+...-.- ....+.+.+.+.|+++.+......+++. .++++|.||.+-
T Consensus 22 kkI-lvvC~sG~gTS~l----l~~kl~~~~~~~gi~~~V~~~~~~~~~~--~~~~~DlIist~ 77 (113)
T 1tvm_A 22 RKI-IVACGGAVATSTM----AAEEIKELCQSHNIPVELIQCRVNEIET--YMDGVHLICTTA 77 (113)
T ss_dssp EEE-EEESCSCSSHHHH----HHHHHHHHHHHTTCCEEEEEECTTTTTT--STTSCSEEEESS
T ss_pred cEE-EEECCCCHHHHHH----HHHHHHHHHHHcCCeEEEEEecHHHHhh--ccCCCCEEEECC
Confidence 454 4458777532110 0133567888889886655444444433 356789665553
No 285
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=24.62 E-value=1.4e+02 Score=24.29 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=8.7
Q ss_pred cccceEEEEecCC
Q 025645 4 MEEKRYALFLAAK 16 (250)
Q Consensus 4 ~~~~riail~~~~ 16 (250)
|.++||+|+.++.
T Consensus 3 m~~~~vgiiG~G~ 15 (319)
T 1tlt_A 3 LKKLRIGVVGLGG 15 (319)
T ss_dssp --CEEEEEECCST
T ss_pred CCcceEEEECCCH
Confidence 5567999998753
No 286
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=24.53 E-value=1.5e+02 Score=26.22 Aligned_cols=57 Identities=12% Similarity=0.044 Sum_probs=35.3
Q ss_pred CcCEEEEcCCCCCCCCC-------ChhHHHHHHHHHHHHhcCCcEEE---EehHHHHH-HHHcCceEE
Q 025645 61 KYDGFVISGSPYDAYGN-------DNWILKLCFMLQTLDAMQKKVLG---ICFGHQVL-CRALGGKVG 117 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~-------~~~~~~~~~~i~~~~~~~~PilG---IC~G~Qll-a~a~gg~v~ 117 (250)
++|+|++.+|+++.... .+-...+.++.+.+.+.++||++ |..+-.+. +.++|+...
T Consensus 293 GaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V 360 (496)
T 4fxs_A 293 GVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCV 360 (496)
T ss_dssp TCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred CCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeE
Confidence 58999998777654211 23334445555555556899987 77666664 556676543
No 287
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=24.04 E-value=89 Score=23.07 Aligned_cols=81 Identities=6% Similarity=-0.070 Sum_probs=42.7
Q ss_pred ceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC-CCCCCCCcCEEEEcCCCCCCCCCChhHHHHH
Q 025645 7 KRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP-DFNDLHKYDGFVISGSPYDAYGNDNWILKLC 85 (250)
Q Consensus 7 ~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~ 85 (250)
.||-++..+.. ... ...+...|...|..+..+......+. ....+..=|.+|+-.-++.. ....
T Consensus 40 ~~I~i~G~G~S--~~~------a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t-------~~~~ 104 (187)
T 3sho_A 40 DHVIVVGMGFS--AAV------AVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYL-------RDTV 104 (187)
T ss_dssp SEEEEECCGGG--HHH------HHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCC-------HHHH
T ss_pred CEEEEEecCch--HHH------HHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCC-------HHHH
Confidence 46777655542 211 12355667778888766541111100 00112333555554322221 4567
Q ss_pred HHHHHHHhcCCcEEEEe
Q 025645 86 FMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 86 ~~i~~~~~~~~PilGIC 102 (250)
+.++.+.+.|.|+++|+
T Consensus 105 ~~~~~ak~~g~~vi~IT 121 (187)
T 3sho_A 105 AALAGAAERGVPTMALT 121 (187)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHCCCCEEEEe
Confidence 77888888888888887
No 288
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=23.81 E-value=2e+02 Score=20.44 Aligned_cols=77 Identities=18% Similarity=0.117 Sum_probs=41.3
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCC--------CCCCCCC-CCcCEEEEcCCCCCCCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGD--------FPDFNDL-HKYDGFVISGSPYDAYG 76 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~--------~~~~~~l-~~~dglIi~Gg~~~~~~ 76 (250)
+++|||+..+.+.. .+...+.+.|.+.|.++ +.+.+.. +++..++ +.+|.++|.=.+
T Consensus 22 p~~iaVVGas~~~g-------~~G~~~~~~l~~~G~~v--~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp~----- 87 (144)
T 2d59_A 22 YKKIALVGASPKPE-------RDANIVMKYLLEHGYDV--YPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP----- 87 (144)
T ss_dssp CCEEEEETCCSCTT-------SHHHHHHHHHHHTTCEE--EEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH-----
T ss_pred CCEEEEEccCCCCC-------chHHHHHHHHHHCCCEE--EEECCCCCeECCeeccCCHHHcCCCCCEEEEEeCH-----
Confidence 57899998776542 34455667788888863 4333321 1222233 246766665211
Q ss_pred CChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 77 NDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 77 ~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
....++++++.+.+++.+-+
T Consensus 88 -----~~~~~vv~~~~~~gi~~i~~ 107 (144)
T 2d59_A 88 -----KLTMEYVEQAIKKGAKVVWF 107 (144)
T ss_dssp -----HHHHHHHHHHHHHTCSEEEE
T ss_pred -----HHHHHHHHHHHHcCCCEEEE
Confidence 23344555555556654433
No 289
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=23.80 E-value=1.2e+02 Score=22.64 Aligned_cols=39 Identities=8% Similarity=-0.006 Sum_probs=22.0
Q ss_pred CcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 61 KYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
++|.||++|=-.+... ......++++.+.+.+.|++.|.
T Consensus 32 ~~D~vi~~GDl~~~~~---~~~~~~~~~~~l~~~~~pv~~v~ 70 (228)
T 1uf3_A 32 GADAIALIGNLMPKAA---KSRDYAAFFRILSEAHLPTAYVP 70 (228)
T ss_dssp TCSEEEEESCSSCTTC---CHHHHHHHHHHHGGGCSCEEEEC
T ss_pred CCCEEEECCCCCCCCC---CHHHHHHHHHHHHhcCCcEEEEC
Confidence 4688888874322211 12334455555555578888775
No 290
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=23.65 E-value=1.3e+02 Score=23.53 Aligned_cols=61 Identities=3% Similarity=0.036 Sum_probs=34.9
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC----CCC--CCCcCEEEEcCCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD----FND--LHKYDGFVISGSP 71 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~----~~~--l~~~dglIi~Gg~ 71 (250)
++.+|+++..+ ..++... +..-+.+.+++.|.++.+..... +... ... -.++||||+.+..
T Consensus 7 ~~~~Igvi~~~-~~~~~~~----~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 7 RSNIIAFIVPD-QNPFFTE----VLTEISHECQKHHLHVAVASSEE-NEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp CEEEEEEEESS-CCHHHHH----HHHHHHHHHGGGTCEEEEEECTT-CHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCCEEEEEECC-CCchHHH----HHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHcCccEEEEecCC
Confidence 34579999876 5554332 33445677888898877654211 1000 000 1468999998653
No 291
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=23.34 E-value=2.6e+02 Score=21.62 Aligned_cols=52 Identities=8% Similarity=-0.107 Sum_probs=31.5
Q ss_pred EEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCC---CCCCCcCEEEEcC
Q 025645 9 YALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDF---NDLHKYDGFVISG 69 (250)
Q Consensus 9 iail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~---~~l~~~dglIi~G 69 (250)
|+||....+. ....+.+.+++.|.++..+........-. ..+.++|.++++.
T Consensus 2 I~il~~~~~~---------~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 56 (280)
T 1uc8_A 2 LAILYDRIRP---------DERMLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERC 56 (280)
T ss_dssp EEEEESSCCH---------HHHHHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECC
T ss_pred EEEEecCCCH---------HHHHHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECC
Confidence 7777654432 23457889999999988876543321000 1245688677764
No 292
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=22.92 E-value=1.5e+02 Score=26.39 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=35.5
Q ss_pred CcCEEEEcCCCCCCCCC-------ChhHHHHHHHHHHHHhcCCcEE---EEehHHHHH-HHHcCceEE
Q 025645 61 KYDGFVISGSPYDAYGN-------DNWILKLCFMLQTLDAMQKKVL---GICFGHQVL-CRALGGKVG 117 (250)
Q Consensus 61 ~~dglIi~Gg~~~~~~~-------~~~~~~~~~~i~~~~~~~~Pil---GIC~G~Qll-a~a~gg~v~ 117 (250)
++|+|++..|+++.... .+-+..+.+..+.+.+.++||+ ||..|-.+. +.++|+...
T Consensus 318 Gad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V 385 (511)
T 3usb_A 318 GANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVV 385 (511)
T ss_dssp TCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred CCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhh
Confidence 57999997666653211 2223334444444444589999 898888876 667776544
No 293
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=22.85 E-value=44 Score=22.63 Aligned_cols=33 Identities=12% Similarity=-0.023 Sum_probs=19.0
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEE
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLF 46 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 46 (250)
|+.+||+|+..+.. ....+...|++.+..+...
T Consensus 1 M~~~~ilivdd~~~----------~~~~l~~~L~~~~~~v~~~ 33 (135)
T 3eqz_A 1 MSLNRVFIVDDDTL----------TCNLLKTIVEPIFGNVEAF 33 (135)
T ss_dssp --CCEEEEECSCHH----------HHHHHHHHHTTTCSCEEEE
T ss_pred CCcceEEEEeCCHH----------HHHHHHHHHHhhcceeeee
Confidence 34568888854332 2345677888876665544
No 294
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=22.83 E-value=76 Score=22.15 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=21.6
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEE
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFR 47 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 47 (250)
|+.++.++|+|+.++. +...+++.|.+.|.++..+.
T Consensus 1 m~~~~~~~v~I~G~G~-----------iG~~la~~L~~~g~~V~~id 36 (141)
T 3llv_A 1 MTENGRYEYIVIGSEA-----------AGVGLVRELTAAGKKVLAVD 36 (141)
T ss_dssp -----CCSEEEECCSH-----------HHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCCEEEEECCCH-----------HHHHHHHHHHHCCCeEEEEE
Confidence 4433445788886532 34557788888898887765
No 295
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=22.79 E-value=96 Score=26.34 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=25.7
Q ss_pred CCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 60 HKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
..++||||-| |.++...+ ..+.+.++++.++++||.=+
T Consensus 252 ~g~~GiVle~~G~Gn~p~~----~~~~~~l~~a~~~Gi~VV~~ 290 (358)
T 2him_A 252 QPVKALILRSYGVGNAPQN----KAFLQELQEASDRGIVVVNL 290 (358)
T ss_dssp SSCSEEEEEEBTTTBCCCC----HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEecCCCCCCCCc----HHHHHHHHHHHHCCCEEEEE
Confidence 4689999997 55555321 34556677787888888643
No 296
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=22.63 E-value=1.4e+02 Score=21.81 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=35.3
Q ss_pred HHHHHhcCCCceEEEEeecCCC--CCCCCCCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEeh
Q 025645 32 FVAAFGEEGERWDLFRVVEGDF--PDFNDLHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICF 103 (250)
Q Consensus 32 ~~~~l~~~g~~~~~~~~~~~~~--~~~~~l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~ 103 (250)
+...|...|..+..+. +.+. .....+..=|.+|+-.-.+.. ....+.++.+.+.+.|+++|+-
T Consensus 67 ~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~~~d~vI~iS~sG~t-------~~~~~~~~~ak~~g~~vi~IT~ 131 (183)
T 2xhz_A 67 MAATFASTGTPSFFVH--PGEAAHGDLGMVTPQDVVIAISNSGES-------SEITALIPVLKRLHVPLICITG 131 (183)
T ss_dssp HHHHHHTTTCCEEECC--TTHHHHHTSTTCCTTCEEEEECSSSCC-------HHHHHHHHHHHTTTCCEEEEES
T ss_pred HHHHHHhcCceEEEeC--chHHhhhhhccCCCCCEEEEEeCCCCC-------HHHHHHHHHHHHCCCCEEEEEC
Confidence 4556667787665442 1110 001123334555544322221 4567788888889999999985
No 297
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=22.44 E-value=85 Score=27.03 Aligned_cols=42 Identities=24% Similarity=0.154 Sum_probs=23.8
Q ss_pred CCCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEeh
Q 025645 59 LHKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICF 103 (250)
Q Consensus 59 l~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~ 103 (250)
+++.|. ||+| |..+...-.. +-...+.+.+.+.++|++.||-
T Consensus 285 l~~ADL-VITGEG~~D~Qtl~G--K~p~gVa~~A~~~~vPviaiaG 327 (383)
T 3cwc_A 285 LADADL-VITGEGRIDSQTIHG--KVPIGVANIAKRYNKPVIGIAG 327 (383)
T ss_dssp HHHCSE-EEECCEESCC----C--HHHHHHHHHHHHTTCCEEEEEE
T ss_pred hcCCCE-EEECCCCCcCcCCCC--cHHHHHHHHHHHhCCCEEEEeC
Confidence 456775 5555 5444311111 2234455677788999999994
No 298
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=22.27 E-value=1.6e+02 Score=23.70 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=24.7
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEE
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFR 47 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 47 (250)
..+|+++..+...++... +..-+.+.+++.|.++.+..
T Consensus 60 ~~~Igvi~~~~~~~~~~~----~~~gi~~~~~~~g~~~~~~~ 97 (330)
T 3ctp_A 60 SKTIGLMVPNISNPFFNQ----MASVIEEYAKNKGYTLFLCN 97 (330)
T ss_dssp CCEEEEEESCTTSHHHHH----HHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEeCCCCCcHHHH----HHHHHHHHHHHCCCEEEEEe
Confidence 457999987665554332 23445667788898877654
No 299
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=22.12 E-value=1.2e+02 Score=24.92 Aligned_cols=44 Identities=11% Similarity=0.042 Sum_probs=27.3
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEee
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVV 49 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 49 (250)
|+++||+||..+...+.-.... -...+.+.|.+.|.++..+.+.
T Consensus 1 m~~~~v~vl~gG~s~E~~vs~~--s~~~v~~al~~~g~~v~~i~~~ 44 (343)
T 1e4e_A 1 MNRIKVAILFGGCSEEHDVSVK--SAIEIAANINKEKYEPLYIGIT 44 (343)
T ss_dssp -CCEEEEEEEECSSTTHHHHHH--HHHHHHHHSCTTTEEEEEEEEC
T ss_pred CCCcEEEEEeCCCCCCcchhHH--HHHHHHHHhhhcCCEEEEEEEc
Confidence 3467999998765544322111 1234567889899888776653
No 300
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=22.09 E-value=1e+02 Score=25.80 Aligned_cols=44 Identities=9% Similarity=0.216 Sum_probs=26.6
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEee
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVV 49 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 49 (250)
|+++||+||..+...+.-.... -...+.+.|.+.|.++..+.+.
T Consensus 1 m~~~~v~vl~gg~s~E~~vs~~--s~~~v~~al~~~g~~v~~i~~~ 44 (364)
T 2i87_A 1 MTKENICIVFGGKSAEHEVSIL--TAQNVLNAIDKDKYHVDIIYIT 44 (364)
T ss_dssp --CEEEEEEEECSSSCHHHHHH--HHHHHHHTSCTTTEEEEEEEEC
T ss_pred CCCcEEEEEECCCCccchhHHH--HHHHHHHHHhhcCCEEEEEEEc
Confidence 3467999998665544322111 1134567888889888777643
No 301
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=22.05 E-value=49 Score=27.01 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=29.3
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC---------CCCCCCCcCEEEE
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP---------DFNDLHKYDGFVI 67 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~---------~~~~l~~~dglIi 67 (250)
|.+|||+++..+... ....+.|.+.|.++.+......++. ..+.+.++|+||.
T Consensus 5 ~~~mki~v~~~~~~~-----------~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~ 66 (300)
T 2rir_A 5 LTGLKIAVIGGDARQ-----------LEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIIL 66 (300)
T ss_dssp CCSCEEEEESBCHHH-----------HHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEEC
T ss_pred ccCCEEEEECCCHHH-----------HHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEe
Confidence 446788888543211 1235667788888765432222211 0233567899887
No 302
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=22.04 E-value=1.2e+02 Score=22.85 Aligned_cols=36 Identities=11% Similarity=-0.055 Sum_probs=23.1
Q ss_pred CEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehHH
Q 025645 63 DGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFGH 105 (250)
Q Consensus 63 dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 105 (250)
-.|+|+-|..+.. ...+.++.+.+.+++|..|.+|.
T Consensus 114 ~ivllTDG~~~~~-------~~~~~~~~~~~~~i~v~~igig~ 149 (218)
T 3ibs_A 114 AIIVITDGENHEG-------GAVEAAKAAAEKGIQVSVLGVGM 149 (218)
T ss_dssp EEEEEECCTTCCS-------CHHHHHHHHHTTTEEEEEEEESC
T ss_pred EEEEEcCCCCCCC-------cHHHHHHHHHhcCCEEEEEEecC
Confidence 4566666643321 23445666777899999999883
No 303
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=21.86 E-value=1.9e+02 Score=22.15 Aligned_cols=81 Identities=11% Similarity=0.019 Sum_probs=43.7
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCC--CCCCCCCcCEEEEcCCCCCCCCCChhHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFP--DFNDLHKYDGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~l~~~dglIi~Gg~~~~~~~~~~~~~ 83 (250)
..||-++..+.. ... ...+...|...|..+..+. +.+.. ....+..=|.+|+-..++.. ..
T Consensus 59 a~~I~i~G~G~S--~~~------A~~~~~~l~~lg~~~~~~~--~~~~~~~~~~~~~~~DlvI~iS~SG~t-------~~ 121 (220)
T 3etn_A 59 KGKLVTSGMGKA--GQI------AMNIATTFCSTGIPSVFLH--PSEAQHGDLGILQENDLLLLISNSGKT-------RE 121 (220)
T ss_dssp CCCEEEECSHHH--HHH------HHHHHHHHHHTTCCEEECC--TTGGGBTGGGGCCTTCEEEEECSSSCC-------HH
T ss_pred CCEEEEEEecHH--HHH------HHHHHHHHHhcCCcEEEeC--CHHHHHhhhccCCCCCEEEEEcCCCCC-------HH
Confidence 356776654432 111 1234556777887765542 22110 01123333555554332221 46
Q ss_pred HHHHHHHHHh--cCCcEEEEeh
Q 025645 84 LCFMLQTLDA--MQKKVLGICF 103 (250)
Q Consensus 84 ~~~~i~~~~~--~~~PilGIC~ 103 (250)
..+.++.+.+ .+.|+++|+-
T Consensus 122 ~i~~~~~ak~~~~Ga~vI~IT~ 143 (220)
T 3etn_A 122 IVELTQLAHNLNPGLKFIVITG 143 (220)
T ss_dssp HHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHHHhcCCCCeEEEEEC
Confidence 6778888888 8999999983
No 304
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=21.84 E-value=3.6e+02 Score=22.72 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=31.4
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISG 69 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~G 69 (250)
+.++++|+..+...+. +.+..++.|+++..+.......+ ..+...|..+..+
T Consensus 4 ~~k~l~Il~~~~~~~~-----------i~~aa~~lG~~vv~v~~~~~~~~--~~~~~~d~~~~~~ 55 (425)
T 3vot_A 4 RNKNLAIICQNKHLPF-----------IFEEAERLGLKVTFFYNSAEDFP--GNLPAVERCVPLP 55 (425)
T ss_dssp CCCEEEEECCCTTCCH-----------HHHHHHHTTCEEEEEEETTSCCC--CSCTTEEEEEEEC
T ss_pred CCcEEEEECCChhHHH-----------HHHHHHHCCCEEEEEECCCcccc--cCHhhccEEEecC
Confidence 3468999976655442 45678889999887754433322 2344456655443
No 305
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=21.82 E-value=53 Score=27.72 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=24.5
Q ss_pred CCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHHhcCCcEEEE
Q 025645 60 HKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLDAMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~~~~~PilGI 101 (250)
.+++||||-| |.++... .+.+.++++.+.++||.=+
T Consensus 244 ~g~~GiVle~~G~Gn~p~------~~~~~l~~a~~~Gi~VV~~ 280 (337)
T 4pga_A 244 NGAKALIHAGTGNGSVSS------RVVPALQQLRKNGTQIIRS 280 (337)
T ss_dssp TTCSEEEEEEBTTTBCCT------TTHHHHHHHHHTTCEEEEE
T ss_pred cCCCEEEEEEeCCCCCCH------HHHHHHHHHHHCCCEEEEe
Confidence 4689999987 5555432 2455667777888888754
No 306
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=21.78 E-value=1.1e+02 Score=23.07 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=19.5
Q ss_pred ccceEEEEecCCC-ChhHHHhhCCHHHHHHHHHhcCCCceEE
Q 025645 5 EEKRYALFLAAKD-SDYVLKVYGGYFNVFVAAFGEEGERWDL 45 (250)
Q Consensus 5 ~~~riail~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 45 (250)
...+|+|+..+.. .+.. ......|++.|+++++
T Consensus 6 ~~~~V~IimgS~SD~~v~--------~~a~~~L~~~gi~~ev 39 (174)
T 3lp6_A 6 ERPRVGVIMGSDSDWPVM--------ADAAAALAEFDIPAEV 39 (174)
T ss_dssp CCCSEEEEESCGGGHHHH--------HHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECcHHhHHHH--------HHHHHHHHHcCCCEEE
Confidence 3457999865432 2222 2235678888987654
No 307
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=21.70 E-value=77 Score=26.15 Aligned_cols=54 Identities=7% Similarity=-0.003 Sum_probs=32.4
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCC--ceEEEEeecC--------C-----CCCCC--CCCCcCEEEE
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGE--RWDLFRVVEG--------D-----FPDFN--DLHKYDGFVI 67 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~~~~~~~~~--------~-----~~~~~--~l~~~dglIi 67 (250)
+.+||+|+.++. ....+.+.|.+.|. ++..+..... . ..+.. .+.++|.||+
T Consensus 32 ~~~kI~IIG~G~-----------mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVil 100 (314)
T 3ggo_A 32 SMQNVLIVGVGF-----------MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVML 100 (314)
T ss_dssp SCSEEEEESCSH-----------HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEE
T ss_pred CCCEEEEEeeCH-----------HHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEE
Confidence 347899997542 45667888888888 5554432210 0 11222 3567888888
Q ss_pred cC
Q 025645 68 SG 69 (250)
Q Consensus 68 ~G 69 (250)
.=
T Consensus 101 av 102 (314)
T 3ggo_A 101 SS 102 (314)
T ss_dssp CS
T ss_pred eC
Confidence 73
No 308
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=21.64 E-value=1e+02 Score=25.75 Aligned_cols=44 Identities=9% Similarity=0.172 Sum_probs=26.3
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEee
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVV 49 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 49 (250)
|.++|||||--+...+.-.+.. -.....+.|++.|.++..+.+.
T Consensus 1 M~kkkv~vl~GG~S~E~evSl~--Sa~~v~~aL~~~gy~v~~i~i~ 44 (357)
T 4fu0_A 1 MQNKKIAVIFGGNSTEYEVSLQ--SASAVFENINTNKFDIIPIGIT 44 (357)
T ss_dssp -CCEEEEEEEECSSTTHHHHHH--HHHHHHHHSCTTTEEEEEEEEC
T ss_pred CCCCEEEEEECCCccchHHHHH--HHHHHHHHHhHhCCEEEEEEEe
Confidence 5578999996555444322111 0133567889999888777543
No 309
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=21.60 E-value=2.9e+02 Score=21.52 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=21.2
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEE
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFR 47 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 47 (250)
+..++|.|+..+. ....-++.|.+.|+++.++.
T Consensus 29 L~gk~VLVVGgG~-----------va~~ka~~Ll~~GA~VtVva 61 (223)
T 3dfz_A 29 LKGRSVLVVGGGT-----------IATRRIKGFLQEGAAITVVA 61 (223)
T ss_dssp CTTCCEEEECCSH-----------HHHHHHHHHGGGCCCEEEEC
T ss_pred cCCCEEEEECCCH-----------HHHHHHHHHHHCCCEEEEEC
Confidence 3567788876542 12234567888899888764
No 310
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=21.31 E-value=1.3e+02 Score=22.81 Aligned_cols=48 Identities=6% Similarity=-0.001 Sum_probs=30.1
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISG 69 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~G 69 (250)
..+||+|+..+. ....+...|.+.|.++..+. .+ ++.+.++|.||+.=
T Consensus 18 ~~~~I~iiG~G~-----------mG~~la~~l~~~g~~V~~~~--~~----~~~~~~aD~vi~av 65 (209)
T 2raf_A 18 QGMEITIFGKGN-----------MGQAIGHNFEIAGHEVTYYG--SK----DQATTLGEIVIMAV 65 (209)
T ss_dssp --CEEEEECCSH-----------HHHHHHHHHHHTTCEEEEEC--TT----CCCSSCCSEEEECS
T ss_pred CCCEEEEECCCH-----------HHHHHHHHHHHCCCEEEEEc--CC----HHHhccCCEEEEcC
Confidence 356899996542 34557788888898766543 21 11466789888863
No 311
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=21.20 E-value=77 Score=24.70 Aligned_cols=55 Identities=11% Similarity=0.218 Sum_probs=35.4
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCC--CC------CCcCEEEEcCC
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFN--DL------HKYDGFVISGS 70 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~--~l------~~~dglIi~Gg 70 (250)
..+||+++-.+...+ .+.+.|++.|+++..+.++....+... .+ ..+|.|+++-+
T Consensus 119 ~g~~vL~~rg~~~r~-----------~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~ 181 (240)
T 3mw8_A 119 SGKQIVIVRGKGGRE-----------AMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQSFGIDTIVVTSG 181 (240)
T ss_dssp TTCEEEEEEESSSCC-----------HHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHHHHTCCEEECCSH
T ss_pred CCCEEEEEeCCCcHH-----------HHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCH
Confidence 456888876554443 256889999999887777665433221 11 35799988743
No 312
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=21.18 E-value=1.5e+02 Score=24.87 Aligned_cols=60 Identities=12% Similarity=0.231 Sum_probs=31.9
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCC-CCCCCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPD-FNDLHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~l~~~dglIi~Gg 70 (250)
.+|++|+-.+.... ... ....+.+.+.+.|.+++++.+...+... ..++.++|+||+.-+
T Consensus 252 ~~kv~i~y~S~~Gn-t~~----lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp 312 (402)
T 1e5d_A 252 TNKVVIFYDSMWHS-TEK----MARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSP 312 (402)
T ss_dssp CSEEEEEECCSSSH-HHH----HHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECC
T ss_pred CCcEEEEEECCChh-HHH----HHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECC
Confidence 36787776544221 111 1233455667778888777654221100 012367899998754
No 313
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=21.05 E-value=1.9e+02 Score=23.36 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=20.0
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceE
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWD 44 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 44 (250)
.+||++|..+ ..+-.. ..+.|.+.+++.|.++.
T Consensus 138 ~~~iaii~~~--~~~~~~----~~~~~~~~l~~~g~~v~ 170 (356)
T 3ipc_A 138 DAKVAIIHDK--TPYGQG----LADETKKAANAAGVTEV 170 (356)
T ss_dssp TCCEEEEECS--SHHHHH----HHHHHHHHHHHTTCCCS
T ss_pred CCEEEEEeCC--ChHHHH----HHHHHHHHHHHcCCEEE
Confidence 3689999653 222111 23456778888888764
No 314
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=21.04 E-value=78 Score=25.25 Aligned_cols=60 Identities=8% Similarity=-0.058 Sum_probs=34.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCC---ceEEEEeecCCCCCCC-------CCCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGE---RWDLFRVVEGDFPDFN-------DLHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~-------~l~~~dglIi~Gg 70 (250)
+.+|+|+ ....++++.. ...-+.+.+++.|. .+.+.......-+..+ .-.++||||+.|.
T Consensus 2 ~~~Igvi-~~~~~p~~~~----i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 2 NAKIGVL-QFVSHPSLDL----IYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp CEEEEEE-ECSCCHHHHH----HHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred ceEEEEE-EccCChhHHH----HHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 4679998 4455665433 23446778888898 7655432222111100 0146899999863
No 315
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=21.00 E-value=2.7e+02 Score=20.91 Aligned_cols=56 Identities=7% Similarity=-0.011 Sum_probs=32.8
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCCCCCCCCCCcCEEEEcCC
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDFPDFNDLHKYDGFVISGS 70 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~dglIi~Gg 70 (250)
.++|.|+-.+.. ...+ .+...+.+.|.+.|.++.++.+... ..++.++|.||+..+
T Consensus 21 ~~kv~IvY~S~t-GnTe----~~A~~ia~~l~~~g~~v~v~~l~~~----~~~l~~~d~vi~g~~ 76 (191)
T 1bvy_F 21 NTPLLVLYGSNM-GTAE----GTARDLADIAMSKGFAPQVATLDSH----AGNLPREGAVLIVTA 76 (191)
T ss_dssp CCCEEEEEECSS-SHHH----HHHHHHHHHHHTTTCCCEEEEGGGS----TTCCCSSSEEEEEEC
T ss_pred CCeEEEEEECCC-hHHH----HHHHHHHHHHHhCCCceEEeeHHHh----hhhhhhCCeEEEEEe
Confidence 457787753322 1111 1234456677778888888776542 125677888887643
No 316
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.97 E-value=1.4e+02 Score=24.17 Aligned_cols=47 Identities=21% Similarity=0.105 Sum_probs=34.6
Q ss_pred CEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEehH--------HHHHHHHcCc
Q 025645 63 DGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGICFG--------HQVLCRALGG 114 (250)
Q Consensus 63 dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G--------~Qlla~a~gg 114 (250)
-.||++||+.... -..+.++++.+.+.++.|-=|++| +|.++.+..|
T Consensus 109 rIIlf~ds~~~~~-----~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 109 RIVAFVCSPISDS-----RDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp EEEEEECSCCSSC-----HHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCS
T ss_pred EEEEEECCCCCCC-----HHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcC
Confidence 3577888876532 246778888899999999888888 5777776544
No 317
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=20.97 E-value=1.7e+02 Score=20.92 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=32.2
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeec--CC------CCCCCCC-CCcCEEEEc
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVE--GD------FPDFNDL-HKYDGFVIS 68 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~------~~~~~~l-~~~dglIi~ 68 (250)
+++|||+..+.+.. .+...+.+.|.+.|.++..++... .+ +++..++ ..+|.+++.
T Consensus 13 p~~IavIGas~~~g-------~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~ 77 (145)
T 2duw_A 13 TRTIALVGASDKPD-------RPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVF 77 (145)
T ss_dssp CCCEEEESCCSCTT-------SHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECC
T ss_pred CCEEEEECcCCCCC-------ChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEE
Confidence 67899998776542 344556677778888754444322 11 2233333 346777766
No 318
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.88 E-value=80 Score=26.14 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=24.2
Q ss_pred CCCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEEEEe
Q 025645 59 LHKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVLGIC 102 (250)
Q Consensus 59 l~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 102 (250)
+..+|.||+..-.. ....|+++...++|+.|+|
T Consensus 116 f~~PdlliV~Dp~~-----------e~~AI~EA~~lgIPvIalv 148 (295)
T 2zkq_b 116 FREPRLLVVTDPRA-----------DHQPLTEASYVNLPTIALC 148 (295)
T ss_dssp CCCCSEEEESCTTT-----------THHHHHHHHHHTCCEEEEE
T ss_pred ccCCCeEEEeCCCc-----------chhHHHHHHHhCCCEEEEe
Confidence 45689999884311 1346788888899999999
No 319
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=20.66 E-value=2.6e+02 Score=22.53 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=20.8
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEE
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLF 46 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 46 (250)
.+||++|..+ ...-.. ....|.+.+++.|.++...
T Consensus 139 ~~~ia~i~~~--~~~~~~----~~~~~~~~l~~~g~~v~~~ 173 (358)
T 3hut_A 139 FTSVAVIGVT--TDWGLS----SAQAFRKAFELRGGAVVVN 173 (358)
T ss_dssp CCEEEEEEES--SHHHHH----HHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEEecC--cHHHHH----HHHHHHHHHHHcCCEEEEE
Confidence 3689999632 222221 2244677888889876543
No 320
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=20.49 E-value=68 Score=26.94 Aligned_cols=36 Identities=8% Similarity=0.013 Sum_probs=24.8
Q ss_pred CCcCEEEEcC-CCCCCCCCChhHHHHHHHHHHHH-hcCCcEEEE
Q 025645 60 HKYDGFVISG-SPYDAYGNDNWILKLCFMLQTLD-AMQKKVLGI 101 (250)
Q Consensus 60 ~~~dglIi~G-g~~~~~~~~~~~~~~~~~i~~~~-~~~~PilGI 101 (250)
..++||||-| |.++.. ..+.+.++++. ++++||.=+
T Consensus 238 ~g~~GiVle~~G~Gn~p------~~~~~~l~~a~~~~gi~VV~~ 275 (331)
T 1agx_A 238 AGVKAIIHAGTGNGSMA------NYLVPEVRKLHDEQGLQIVRS 275 (331)
T ss_dssp TTCSEEEEEEBTTTBCC------TTHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEeeECCCCCC------HHHHHHHHHHHHcCCCEEEEE
Confidence 3689999997 555543 23556677777 888988654
No 321
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=20.43 E-value=1.2e+02 Score=23.74 Aligned_cols=47 Identities=9% Similarity=0.008 Sum_probs=28.7
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHH-HHHhcCCcEEEEehHHHHHHHH
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQ-TLDAMQKKVLGICFGHQVLCRA 111 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~-~~~~~~~PilGIC~G~Qlla~a 111 (250)
.++|+|.++-||++... . .-. ....+ -+...++|++||+- ++.++..
T Consensus 65 ~dld~Iav~~GPGsfTG-l--RiG-~~~Ak~La~~~~iPl~gVs~-l~a~a~~ 112 (218)
T 2a6a_A 65 KDLDVVGVGIGPGGLTG-L--RVG-IATVVGLVSPYDIPVAPLNS-FEMTAKS 112 (218)
T ss_dssp GGCSEEEEECCSSCHHH-H--HHH-HHHHHHHHGGGTCCEEEECH-HHHHHHT
T ss_pred HHCCEEEEEcCCCchHh-H--HHH-HHHHHHHHHHcCCCEEEeCc-HHHHHhh
Confidence 46899999999987421 0 011 11112 13456899999996 5555543
No 322
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=20.34 E-value=3.3e+02 Score=22.22 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=35.0
Q ss_pred HHHHhcCCCceEEEEeecCCC-CCCCCCC-----CcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHhcCCcEE
Q 025645 33 VAAFGEEGERWDLFRVVEGDF-PDFNDLH-----KYDGFVISGSPYDAYGNDNWILKLCFMLQTLDAMQKKVL 99 (250)
Q Consensus 33 ~~~l~~~g~~~~~~~~~~~~~-~~~~~l~-----~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~~~~Pil 99 (250)
...++..|.++..+.+....+ ++.+.++ +...|+++ .|.++.....-...+.++++.+.+.+.+++
T Consensus 134 ~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li 205 (396)
T 3jtx_A 134 EGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVC-SPNNPSGSVLDLDGWKEVFDLQDKYGFIIA 205 (396)
T ss_dssp HHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEE-CCCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 446667788888777633222 2333343 45778876 455543332113445555555555555443
No 323
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=20.31 E-value=30 Score=29.42 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=32.2
Q ss_pred CCcCEEEEcCCCCCCCCCChhHHHHHHHHHHHHh-c-----CCcEEEEehHHHHHHHHcCc
Q 025645 60 HKYDGFVISGSPYDAYGNDNWILKLCFMLQTLDA-M-----QKKVLGICFGHQVLCRALGG 114 (250)
Q Consensus 60 ~~~dglIi~Gg~~~~~~~~~~~~~~~~~i~~~~~-~-----~~PilGIC~G~Qlla~a~gg 114 (250)
.++++|+++||.... +.+.+.++.... . .-|-..++.|.-+.+..+.|
T Consensus 350 ~~i~~VvLvGG~s~~-------p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 350 GQIQEIVLVGGSTRI-------PKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp GGCCEEEEESGGGGC-------HHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred hhCCEEEEECCcccc-------HHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 467999999996542 566667766652 1 13666788898888776644
No 324
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=20.18 E-value=1.9e+02 Score=24.01 Aligned_cols=82 Identities=11% Similarity=0.041 Sum_probs=43.1
Q ss_pred cceEEEEecCCCChhHHHhhCCHHHHHHHHHhc-CCCceEEEEeecCCCCCCCCCCCc-CEEEEcCCCCCCCCCChhHHH
Q 025645 6 EKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGE-EGERWDLFRVVEGDFPDFNDLHKY-DGFVISGSPYDAYGNDNWILK 83 (250)
Q Consensus 6 ~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~l~~~-dglIi~Gg~~~~~~~~~~~~~ 83 (250)
..||.++.++.. .... ..+...|+. .|..+..+......+... .+..= |.+|+-.-++.. ..
T Consensus 52 ~~~I~i~G~G~S--~~~a------~~~~~~l~~~~g~~v~~~~~~~~~~~~~-~~~~~~dlvI~iS~SG~T-------~e 115 (342)
T 1j5x_A 52 TDEVLFVGCGSS--YNLA------LTISYYFERVLKIRTKAIPAGEVAFQKI-PDLEERGLAFLFSRTGNT-------TE 115 (342)
T ss_dssp CCEEEEEESTHH--HHHH------HHHHHHHHHHHCCEEEEEEHHHHHTTCS-CCCCSSEEEEEECSSSCC-------HH
T ss_pred CCEEEEEEchHH--HHHH------HHHHHHHHHhhCCeEEEECchHHHhcCc-ccCCCCeEEEEEcCCCCC-------HH
Confidence 346777766542 2111 224455666 688776653211101111 12222 444444322221 46
Q ss_pred HHHHHHHHHhcCCcEEEEeh
Q 025645 84 LCFMLQTLDAMQKKVLGICF 103 (250)
Q Consensus 84 ~~~~i~~~~~~~~PilGIC~ 103 (250)
..+.++.+.+.|.++++||-
T Consensus 116 ~l~a~~~ak~~Ga~vIaIT~ 135 (342)
T 1j5x_A 116 VLLANDVLKKRNHRTIGITI 135 (342)
T ss_dssp HHHHHHHHHHTTEEEEEEES
T ss_pred HHHHHHHHHHCCCCEEEEEC
Confidence 67788888888999999996
No 325
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=20.17 E-value=61 Score=25.73 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=11.6
Q ss_pred cccceEEEEecCCCCh
Q 025645 4 MEEKRYALFLAAKDSD 19 (250)
Q Consensus 4 ~~~~riail~~~~~~~ 19 (250)
|+++|||+++.+....
T Consensus 1 M~~~kva~~Q~~~~~~ 16 (266)
T 2e11_A 1 MHDLRISLVQGSTRWH 16 (266)
T ss_dssp CCCEEEEEEECCCCTT
T ss_pred CCccEEEEEeCCCCcC
Confidence 4457999999876543
No 326
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=20.15 E-value=1.4e+02 Score=22.03 Aligned_cols=103 Identities=16% Similarity=0.091 Sum_probs=52.4
Q ss_pred ccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCC--ceEEEEeec-CCCCCC----CCCCCcCEEEEcCCCCCCC-C
Q 025645 5 EEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGE--RWDLFRVVE-GDFPDF----NDLHKYDGFVISGSPYDAY-G 76 (250)
Q Consensus 5 ~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~~~~~~~~-~~~~~~----~~l~~~dglIi~Gg~~~~~-~ 76 (250)
...||+|+...-..+ +.+. ...-..+.|.+.|. +++++++.. -+.|-. ..-.+||++|..|-.-.-. .
T Consensus 12 ~~~ri~IV~arfn~~-I~~~---Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~ 87 (156)
T 1c2y_A 12 QSFRFAIVVARFNEF-VTRR---LMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTS 87 (156)
T ss_dssp TTCCEEEEEESTTHH-HHHH---HHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEECCCCSST
T ss_pred CCCEEEEEEEeCcHH-HHHH---HHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCch
Confidence 357999998664432 1111 11223456777785 566776532 122210 0124699999998542110 0
Q ss_pred CChhH--HHHHHHHHHHHhcCCcE-EEEeh---HHHHHHHH
Q 025645 77 NDNWI--LKLCFMLQTLDAMQKKV-LGICF---GHQVLCRA 111 (250)
Q Consensus 77 ~~~~~--~~~~~~i~~~~~~~~Pi-lGIC~---G~Qlla~a 111 (250)
...++ .-...+++-.++.++|| +||-- =.|.+.++
T Consensus 88 Hfd~Va~~v~~gl~~v~L~~~vPV~~GVLT~~~~eQA~~Ra 128 (156)
T 1c2y_A 88 HYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRA 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCEEEEEECCSSHHHHHHHE
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHHc
Confidence 11222 22345566667789995 45532 23445444
No 327
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=20.14 E-value=53 Score=22.15 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=18.9
Q ss_pred CCccccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEE
Q 025645 1 MDLMEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLF 46 (250)
Q Consensus 1 m~~~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 46 (250)
|....++||+|+..+.. ....+...|++.|..+...
T Consensus 1 M~~~~~~~ilivdd~~~----------~~~~l~~~L~~~g~~v~~~ 36 (132)
T 3lte_A 1 MSLKQSKRILVVDDDQA----------MAAAIERVLKRDHWQVEIA 36 (132)
T ss_dssp ------CEEEEECSCHH----------HHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCccEEEEECCHH----------HHHHHHHHHHHCCcEEEEe
Confidence 55455678888854332 2344677888888766543
No 328
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=20.10 E-value=62 Score=26.29 Aligned_cols=54 Identities=11% Similarity=0.081 Sum_probs=29.7
Q ss_pred cccceEEEEecCCCChhHHHhhCCHHHHHHHHHhcCCCceEEEEeecCCC--------C-CCCCCCCcCEEEEc
Q 025645 4 MEEKRYALFLAAKDSDYVLKVYGGYFNVFVAAFGEEGERWDLFRVVEGDF--------P-DFNDLHKYDGFVIS 68 (250)
Q Consensus 4 ~~~~riail~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--------~-~~~~l~~~dglIi~ 68 (250)
|.+|+|+|+..+... ..+.+.|.+.|.++........++ . ..+.+.++|++|++
T Consensus 3 ~~~m~i~v~~~~~~~-----------~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 65 (293)
T 3d4o_A 3 LTGKHVVIIGGDARQ-----------LEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLP 65 (293)
T ss_dssp CTTCEEEEECBCHHH-----------HHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECC
T ss_pred ccCcEEEEECCCHHH-----------HHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEec
Confidence 456788888543211 123567778888876543211111 0 12335678999885
Done!