BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025648
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 10 SHEYVAVLFYASWCPFSRNFRPXXXXXXXX-XXXIPHFAIEE-SAIRPSIL-SKYGVHGF 66
+ V + FYA WC + F P P A+ + A S+L SK+ V G+
Sbjct: 33 DKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGY 92
Query: 67 PTLFLLNSSMRVRYHGSRTLDSLVAFYSDVT 97
PT+ +L V Y GSRT + +VA +V+
Sbjct: 93 PTIKILKKGQAVDYDGSRTQEEIVAKVREVS 123
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 3 LNMVHKNSHEYVAVLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEE-SAIRPSILSKY 61
+ + N ++ V + FYA WC +N P P+ I + A + S Y
Sbjct: 362 FDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPY 421
Query: 62 GVHGFPTLFLLNSSMRV---RYHGSRTLDSLVAF 92
V GFPT++ ++ ++ +Y G R L +++
Sbjct: 422 EVRGFPTIYFSPANKKLNPKKYEGGRELSDFISY 455
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 16 VLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSS 75
V F+A WC ++ P I A + + +KYGV G+PTL +
Sbjct: 26 VEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDG 85
Query: 76 MRV-RYHGSRTLDSLVA 91
Y G RT D +V+
Sbjct: 86 EEAGAYDGPRTADGIVS 102
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 3 LNMVHKNSHEYVAVLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEE-SAIRPSILSKY 61
+ + N ++ V + FYA WC +N P P+ I + A + S Y
Sbjct: 37 FDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPY 96
Query: 62 GVHGFPTLFLLNSSMRV---RYHGSRTLDSLVAF 92
V GFPT++ ++ ++ +Y G R L +++
Sbjct: 97 EVRGFPTIYFSPANKKLNPKKYEGGRELSDFISY 130
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 10 SHEYVAVLFYASWCPFSRNFRPXXXXXX----XXXXXIPHFAIEESAIRPSIL-SKYGVH 64
+ V + FYA WC + F P IP I+ A S+L S++ V
Sbjct: 31 DKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKID--ATSASVLASRFDVS 88
Query: 65 GFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVT 97
G+PT+ +L V Y GSRT + +VA +V+
Sbjct: 89 GYPTIKILKKGQAVDYEGSRTQEEIVAKVREVS 121
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 9 NSHEYVAVLFYASWCPFSRNFRPXXXXXXXXXXX----IPHFAIEESAIRPSILSKYGVH 64
N + + V FYA WC + P IP ++ +A + ++ V
Sbjct: 145 NDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA-ETDLAKRFDVS 203
Query: 65 GFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTG 98
G+PTL + Y+G R +V + + +G
Sbjct: 204 GYPTLKIFRKGRPYDYNGPREKYGIVDYMIEQSG 237
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 9 NSHEYVAVLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSI----LSKYGVH 64
+S + V FYA WC +N P ++ +A+ ++ S+YG+
Sbjct: 23 DSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIR 82
Query: 65 GFPTLFLLNSSMR-VRYHGSRTLDSLVA 91
GFPT+ + V Y G RT +V+
Sbjct: 83 GFPTIKIFQKGESPVDYDGGRTRSDIVS 110
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 16 VLFYASWCPFSRNFRPXXXXXXXXXXXIPHFA------IEESAIRPSILSKYGVHGFPTL 69
+ FYA WC + P P A ++ +A R +I SKY V G+PTL
Sbjct: 28 IKFYAPWCGHCKTLAPTWEELSKKE--FPGLAGVKIAEVDCTAER-NICSKYSVRGYPTL 84
Query: 70 FLLNSSMRVRYH-GSRTLDSLVAF 92
L +V H G R LDSL F
Sbjct: 85 LLFRGGKKVSEHSGGRDLDSLHRF 108
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 16 VLFYASWCPFSRNFRPXXXXXXXXXXXIPHFA------IEESAIRPSILSKYGVHGFPTL 69
+ FYA WC + P P A ++ +A R +I SKY V G+PTL
Sbjct: 21 IKFYAPWCGHCKTLAPTWEELSKKE--FPGLAGVKIAEVDCTAER-NICSKYSVRGYPTL 77
Query: 70 FLLNSSMRVRYH-GSRTLDSLVAF 92
L +V H G R LDSL F
Sbjct: 78 LLFRGGKKVSEHSGGRDLDSLHRF 101
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 16 VLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSILSKYGVHGFPT--LFLLN 73
V FYA WC + P + + S+ +YGV GFPT +F N
Sbjct: 40 VEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGAN 99
Query: 74 SSMRVRYHGSRTLDSLV 90
+ Y G RT +++V
Sbjct: 100 KNKPEDYQGGRTGEAIV 116
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 16 VLFYASWCPFSRNFRPXXXXXXXXXXXIPHFA------IEESAIRPSILSKYGVHGFPTL 69
+ FYA WC + P P A ++ +A R +I SKY V G+PTL
Sbjct: 26 IKFYAPWCGHCKTLAPTWEELSKKE--FPGLAGVKIAEVDCTAER-NICSKYSVRGYPTL 82
Query: 70 FLLNSSMRVRYH-GSRTLDSLVAF 92
L +V H G R LDSL F
Sbjct: 83 LLFRGGKKVSEHSGGRDLDSLHRF 106
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 16 VLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSS 75
V F+A WC + P I A + + +KYGV G+PTL +
Sbjct: 26 VEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDG 85
Query: 76 MRVR-YHGSRTLDSLVA 91
Y G RT D +V+
Sbjct: 86 EEAGAYDGPRTADGIVS 102
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 16 VLFYASWCPFSRNFRPXXXXXXXXXXXIP-HFAIEESAIRPSILSKYGVHGFPTLFLLNS 74
+ FYA WCP +N +P + + A + +P + ++ ++ PT++
Sbjct: 27 IEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCKD 86
Query: 75 SMRVRYHGSRTLDSLVAFYSD 95
RY G RT + F SD
Sbjct: 87 GEFRRYQGPRTKKDFINFISD 107
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 41/105 (39%)
Query: 16 VLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSS 75
V F+A W P SR P + I + + Y + +PT + N S
Sbjct: 460 VDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQS 519
Query: 76 MRVRYHGSRTLDSLVAFYSDVTGMNTASLDKISPDKVGKASNHEK 120
Y G + + ++ F D+ + SL + +++ K H++
Sbjct: 520 SIHEYEGHHSAEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDE 564
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 62 GVHGFPTLFLLNSSMR-VRYHGSRTLDSLVAF 92
GV+ +P+LF+ S M V+Y+G R+ +SLVAF
Sbjct: 184 GVNSYPSLFIFRSGMAAVKYNGDRSKESLVAF 215
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 9 NSHEYVAVLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSILSKYGVHGFPT 68
NS E V FY+ C + P + + GV+ +P+
Sbjct: 112 NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPS 171
Query: 69 LFLLNSSMR-VRYHGSRTLDSLVAF 92
LF+ S M V+Y+G R+ +SLVAF
Sbjct: 172 LFIFRSGMAAVKYNGDRSKESLVAF 196
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 18/101 (17%)
Query: 10 SHEYVAVLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIR---------PSILSK 60
+H+Y+ V FYA WC + P E S IR + +
Sbjct: 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAG------KLKAEGSEIRLAKVDATEESDLAQQ 76
Query: 61 YGVHGFPTLFLL---NSSMRVRYHGSRTLDSLVAFYSDVTG 98
YGV G+PT+ +++ Y R D +V + TG
Sbjct: 77 YGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTG 117
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 14 VAVLFYASWCPFSRNFRPXXX------XXXXXXXXIPHFAIEESAIRPSILSKYGVHGFP 67
V VL+YA WC + P I E+ +R + + G+P
Sbjct: 379 VLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVV-----IEGYP 433
Query: 68 TLFLL---NSSMRVRYHGSRTLDSLVAF 92
T+ L S V Y GSR+LDSL F
Sbjct: 434 TIVLYPGGKKSESVVYQGSRSLDSLFDF 461
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 10 SHEYVAVLFYASWCPFSRNFRPXXXXXXXXXXXIP-HFAIEESAIRPSILSKYGVHGFPT 68
SH+ V F+A WC +N P A + + ++ + GFP+
Sbjct: 30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPS 89
Query: 69 LFLLNSSM---RVRYHGSRTLDSLVAF 92
L + +S + Y G RT +++V F
Sbjct: 90 LKIFKNSDVNNSIDYEGPRTAEAIVQF 116
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 14 VAVLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSILSKYGVHGFPTL-FLL 72
V V FYA WC + P + I + + + VH FPTL F
Sbjct: 28 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFP 87
Query: 73 NSSMR--VRYHGSRTLDSLVAF 92
S+ R + Y+G RTLD F
Sbjct: 88 ASADRTVIDYNGERTLDGFKKF 109
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 14 VAVLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSILSKYGVHGFPTL-FLL 72
V V FYA WC + P + I + + + VH FPTL F
Sbjct: 270 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFP 329
Query: 73 NSSMR--VRYHGSRTLDSLVAF 92
S+ R + Y+G RTLD F
Sbjct: 330 ASADRTVIDYNGERTLDGFKKF 351
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 5 MVHKNSHEYVAVLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSILSKYGVH 64
++++N + V F+A WC RN P + FA + +KY V
Sbjct: 13 LINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEV-EFAKVDVDQNEEAAAKYSVT 71
Query: 65 GFPTLFLLNSSMRV-RYHGS 83
PT + V R+ G+
Sbjct: 72 AMPTFVFIKDGKEVDRFSGA 91
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 9 NSHEYVAVLFYASWCPFSRNFRPXXXXXXXXXXX----IPHFAIEESAIRPSILSKYGVH 64
N+ + + V FYA WC + P IP A ++ + + ++ V
Sbjct: 22 NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIP-LAKVDATEQTDLAKRFDVS 80
Query: 65 GFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTGMNTAS 103
G+PTL + Y+G R +V + + +G +S
Sbjct: 81 GYPTLKIFRKGRPFDYNGPREKYGIVDYMIEQSGSGPSS 119
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 59 SKYGVHGFPTLFLLNSSMRVRYH 81
KYGVH +PTL +NSS V Y
Sbjct: 80 KKYGVHAYPTLLFINSSGEVVYR 102
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 9 NSHEYVAVLFYASWCPFSRNFRPX-XXXXXXXXXXIPH-----FAIEESAIRPSILSKYG 62
N+ + V FYA WC FS+ P P+ FA + I +Y
Sbjct: 20 NNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYR 79
Query: 63 VHGFPTLFLLNSSMRVR--YHGSRTLDSLVAF 92
+ +PTL L + + Y G R++ +L +
Sbjct: 80 ISKYPTLKLFRNGXXXKREYRGQRSVKALADY 111
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 8 KNSHEYVAVLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSILSKYGVHGFP 67
K S + + V F ASWCP + P + ++ ++ ++ ++ V P
Sbjct: 23 KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELK-AVAEEWNVEAMP 81
Query: 68 TLFLLNSSMRVRYHGSRTLDSL 89
T L V D L
Sbjct: 82 TFIFLKDGKLVDKTVGADKDGL 103
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 14 VAVLFYASWCPFSRNFRPXXXXXX---XXXXXIPHFAIEESAIRPSILSKYGVHGFPTLF 70
+ V F+A WC + + P + I+++ P KYG+ G PTL
Sbjct: 23 ILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQN---PGTAPKYGIRGIPTLL 79
Query: 71 LLNSS 75
L +
Sbjct: 80 LFKNG 84
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
Length = 108
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 14 VAVLFYASWCPFSRNFRPXXXXXX---XXXXXIPHFAIEESAIRPSILSKYGVHGFPTLF 70
+ V F+A WC ++ P + I+++ P KYG+ G PTL
Sbjct: 23 ILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQN---PGTAPKYGIRGIPTLL 79
Query: 71 LLNSS 75
L +
Sbjct: 80 LFKNG 84
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina
Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina
Mazei
Length = 140
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 24/62 (38%)
Query: 8 KNSHEYVAVLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSILSKYGVHGFP 67
++S + V V FY+ CP+ + P F A P KYGV G P
Sbjct: 21 EDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTP 80
Query: 68 TL 69
T
Sbjct: 81 TF 82
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 14 VAVLFYASWCPFSRNFRPXXXXXX---XXXXXIPHFAIEESAIRPSILSKYGVHGFPTLF 70
+ V F+A WC S+ P + I+++ P KYG+ G PTL
Sbjct: 23 ILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQN---PGTAPKYGIRGIPTLL 79
Query: 71 LLNSS 75
L +
Sbjct: 80 LFKNG 84
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 19/104 (18%)
Query: 4 NMVHKNSHEYVAVLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSILSKYG- 62
N + + + V + FYA WC + P +A E R +++K
Sbjct: 18 NEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGAL------YAKSEFKDR-VVIAKVDA 70
Query: 63 --------VHGFPTLFLLNSSMR---VRYHGSRTLDSLVAFYSD 95
+ GFPT+ L + + V Y GSRT++ L+ F ++
Sbjct: 71 TANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 114
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 10 SHEYVAVLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSILSKYGVHGFPTL 69
SHE V F+A WC P + F S P I ++YGV PT+
Sbjct: 15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQV-GFGKLNSDENPDIAARYGVMSLPTV 73
Query: 70 FLLNSSMRV 78
V
Sbjct: 74 IFFKDGEPV 82
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 14 VAVLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSILS--KYGVHGFPTLFL 71
V + FYA WC + P I + + ++ +Y V GFPT++
Sbjct: 28 VLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYF 87
Query: 72 LNSSMR---VRYHGS-RTLDSLVAF 92
S + +++ G R L+ L F
Sbjct: 88 APSGDKKNPIKFEGGNRDLEHLSKF 112
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 14 VAVLFYASWCPFSRNFRPXXXXXX---XXXXXIPHFAIEESAIRPSILSKYGVHGFPTLF 70
+ V F+A WC + P + I+++ P KYG+ G PTL
Sbjct: 23 ILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQN---PGTAPKYGIRGIPTLL 79
Query: 71 LLNSS 75
L +
Sbjct: 80 LFKNG 84
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 10 SHEYVAVLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSILSKYGVHGFPTL 69
+ V V F A+WC + +P + ++ + + KYG+ G PTL
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQ-DVAPKYGIRGIPTL 77
Query: 70 FLLNSS 75
L +
Sbjct: 78 LLFKNG 83
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 16 VLFYASWCPFSRNFRPXXXXXXXXXXXIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSS 75
+ F+A WC R+F P F + P++ +++ + PT+ L
Sbjct: 60 IDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXL---- 115
Query: 76 MRVRYHGSRTLDSL 89
Y + +D L
Sbjct: 116 ----YRNGKXIDXL 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,511,393
Number of Sequences: 62578
Number of extensions: 221845
Number of successful extensions: 489
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 38
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)