Query 025648
Match_columns 250
No_of_seqs 392 out of 1695
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:01:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 1.9E-29 4E-34 231.4 7.1 93 8-100 39-135 (493)
2 KOG0191 Thioredoxin/protein di 99.9 8.3E-26 1.8E-30 206.3 9.7 183 7-210 43-254 (383)
3 KOG2640 Thioredoxin [Function 99.9 3.1E-26 6.8E-31 196.7 5.5 239 3-246 68-318 (319)
4 cd02999 PDI_a_ERp44_like PDIa 99.9 8.9E-22 1.9E-26 146.8 9.2 90 2-93 9-100 (100)
5 KOG0910 Thioredoxin-like prote 99.9 1.3E-21 2.8E-26 153.0 9.1 95 4-98 54-149 (150)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.7E-21 5.8E-26 147.2 10.4 86 8-93 26-113 (113)
7 TIGR02187 GlrX_arch Glutaredox 99.8 5.4E-21 1.2E-25 161.5 9.0 156 10-172 18-196 (215)
8 PF00085 Thioredoxin: Thioredo 99.8 6.5E-20 1.4E-24 135.9 12.7 90 7-96 13-103 (103)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.9E-20 4E-25 139.5 9.6 84 9-92 16-100 (101)
10 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.7E-20 3.6E-25 140.3 9.3 87 7-93 15-104 (104)
11 cd02963 TRX_DnaJ TRX domain, D 99.8 1.2E-19 2.6E-24 137.8 10.5 87 9-95 22-110 (111)
12 cd02956 ybbN ybbN protein fami 99.8 1.6E-19 3.4E-24 133.0 10.3 86 9-94 10-96 (96)
13 PHA02278 thioredoxin-like prot 99.8 6.8E-19 1.5E-23 131.9 11.0 84 9-92 12-100 (103)
14 cd02996 PDI_a_ERp44 PDIa famil 99.8 4.1E-19 8.8E-24 133.9 9.6 86 8-93 15-108 (108)
15 cd03002 PDI_a_MPD1_like PDI fa 99.8 4.1E-19 8.9E-24 133.6 9.4 88 7-94 14-109 (109)
16 cd02954 DIM1 Dim1 family; Dim1 99.8 3.7E-19 8.1E-24 134.9 9.0 77 9-85 12-89 (114)
17 COG3118 Thioredoxin domain-con 99.8 4.9E-19 1.1E-23 152.3 9.3 94 6-99 38-132 (304)
18 cd03065 PDI_b_Calsequestrin_N 99.8 1.2E-18 2.6E-23 133.7 9.8 92 5-97 21-119 (120)
19 PRK09381 trxA thioredoxin; Pro 99.8 2.6E-18 5.7E-23 129.5 11.4 90 8-97 18-108 (109)
20 cd02994 PDI_a_TMX PDIa family, 99.8 2.4E-18 5.3E-23 127.8 10.8 81 14-95 19-101 (101)
21 cd03005 PDI_a_ERp46 PDIa famil 99.8 2E-18 4.4E-23 128.0 9.8 82 12-93 17-102 (102)
22 cd02985 TRX_CDSP32 TRX family, 99.8 5E-18 1.1E-22 127.1 11.5 85 9-95 13-101 (103)
23 cd03001 PDI_a_P5 PDIa family, 99.8 2.6E-18 5.7E-23 127.7 9.9 86 8-93 15-102 (103)
24 cd03000 PDI_a_TMX3 PDIa family 99.8 3.8E-18 8.2E-23 127.8 10.8 88 9-96 13-103 (104)
25 cd02948 TRX_NDPK TRX domain, T 99.8 6.1E-18 1.3E-22 126.4 11.3 86 8-95 14-101 (102)
26 PTZ00443 Thioredoxin domain-co 99.8 5E-18 1.1E-22 143.6 11.7 89 10-98 51-140 (224)
27 PRK10996 thioredoxin 2; Provis 99.8 1.3E-17 2.9E-22 131.5 11.9 90 8-97 49-139 (139)
28 TIGR01126 pdi_dom protein disu 99.8 9.2E-18 2E-22 124.2 10.3 88 9-96 11-101 (102)
29 cd02993 PDI_a_APS_reductase PD 99.7 7.6E-18 1.7E-22 127.3 9.6 85 9-93 19-109 (109)
30 cd02997 PDI_a_PDIR PDIa family 99.7 1.5E-17 3.2E-22 123.7 9.9 85 9-93 15-104 (104)
31 KOG0907 Thioredoxin [Posttrans 99.7 1.6E-17 3.4E-22 124.8 9.9 86 8-95 18-104 (106)
32 cd02949 TRX_NTR TRX domain, no 99.7 2.4E-17 5.2E-22 121.9 10.1 93 2-94 4-97 (97)
33 KOG4277 Uncharacterized conser 99.7 4.3E-18 9.3E-23 145.9 6.3 99 8-106 40-141 (468)
34 TIGR01068 thioredoxin thioredo 99.7 4E-17 8.7E-22 120.2 10.6 89 8-96 11-100 (101)
35 PLN00410 U5 snRNP protein, DIM 99.7 4.6E-17 1E-21 128.0 11.2 89 9-97 21-120 (142)
36 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 2.4E-17 5.2E-22 122.4 8.7 87 6-93 13-104 (104)
37 cd02965 HyaE HyaE family; HyaE 99.7 6.9E-17 1.5E-21 121.8 10.2 83 9-91 25-110 (111)
38 cd02998 PDI_a_ERp38 PDIa famil 99.7 3.7E-17 7.9E-22 121.5 8.7 88 6-93 13-105 (105)
39 cd02950 TxlA TRX-like protein 99.7 1.3E-16 2.8E-21 126.3 12.3 93 8-100 17-113 (142)
40 cd03007 PDI_a_ERp29_N PDIa fam 99.7 2.7E-17 5.8E-22 125.1 7.7 85 8-96 15-115 (116)
41 TIGR01130 ER_PDI_fam protein d 99.7 1.4E-16 3.1E-21 147.8 10.7 107 9-115 16-128 (462)
42 cd02961 PDI_a_family Protein D 99.7 2.2E-16 4.7E-21 115.6 8.8 85 9-93 13-101 (101)
43 cd02984 TRX_PICOT TRX domain, 99.7 4.3E-16 9.3E-21 114.6 10.4 82 11-93 14-96 (97)
44 KOG0191 Thioredoxin/protein di 99.7 1.6E-16 3.4E-21 145.2 9.6 165 5-173 156-355 (383)
45 cd02989 Phd_like_TxnDC9 Phosdu 99.7 6.4E-16 1.4E-20 117.7 11.2 75 9-84 20-95 (113)
46 cd02962 TMX2 TMX2 family; comp 99.7 3.9E-16 8.4E-21 124.7 10.2 74 9-82 45-126 (152)
47 cd02953 DsbDgamma DsbD gamma f 99.7 2.2E-16 4.8E-21 118.0 8.0 87 8-94 8-104 (104)
48 PTZ00102 disulphide isomerase; 99.7 4.3E-16 9.3E-21 145.7 11.2 97 9-106 47-147 (477)
49 cd02957 Phd_like Phosducin (Ph 99.7 8.2E-16 1.8E-20 117.0 10.6 72 11-84 24-96 (113)
50 cd02975 PfPDO_like_N Pyrococcu 99.7 8.4E-16 1.8E-20 117.1 10.3 90 8-98 19-111 (113)
51 PTZ00051 thioredoxin; Provisio 99.7 9.7E-16 2.1E-20 113.0 9.8 81 8-90 15-96 (98)
52 KOG0190 Protein disulfide isom 99.6 2.9E-16 6.3E-21 144.7 6.2 94 3-98 376-474 (493)
53 cd02986 DLP Dim1 family, Dim1- 99.6 1.7E-15 3.8E-20 114.2 9.2 87 9-95 12-109 (114)
54 PTZ00102 disulphide isomerase; 99.6 2.7E-15 6E-20 140.3 11.2 95 5-99 369-467 (477)
55 cd02951 SoxW SoxW family; SoxW 99.6 3.5E-15 7.7E-20 115.2 9.8 90 8-98 10-120 (125)
56 KOG0912 Thiol-disulfide isomer 99.6 9E-16 1.9E-20 131.8 6.9 94 8-101 10-110 (375)
57 PLN02309 5'-adenylylsulfate re 99.6 3E-15 6.5E-20 138.4 10.8 89 8-96 362-456 (457)
58 cd02947 TRX_family TRX family; 99.6 1.2E-14 2.6E-19 104.2 10.8 83 10-93 9-92 (93)
59 cd02992 PDI_a_QSOX PDIa family 99.6 4.1E-15 8.9E-20 113.4 8.6 85 7-91 15-110 (114)
60 TIGR00424 APS_reduc 5'-adenyly 99.6 5.5E-15 1.2E-19 136.7 10.9 89 8-96 368-462 (463)
61 TIGR00411 redox_disulf_1 small 99.6 2.2E-14 4.8E-19 102.2 10.4 80 14-96 2-81 (82)
62 cd02987 Phd_like_Phd Phosducin 99.6 1.7E-14 3.7E-19 118.0 10.7 83 11-95 83-173 (175)
63 KOG0908 Thioredoxin-like prote 99.6 1.2E-14 2.5E-19 121.9 9.6 93 7-101 17-110 (288)
64 PTZ00062 glutaredoxin; Provisi 99.6 4.8E-15 1E-19 123.7 6.3 115 11-140 17-134 (204)
65 TIGR01295 PedC_BrcD bacterioci 99.5 6.6E-14 1.4E-18 108.0 10.8 85 8-94 20-121 (122)
66 cd02982 PDI_b'_family Protein 99.5 5.5E-14 1.2E-18 104.4 8.6 86 11-96 12-102 (103)
67 cd02988 Phd_like_VIAF Phosduci 99.5 3.2E-13 7E-18 112.0 10.1 81 11-95 102-190 (192)
68 PRK14018 trifunctional thiored 99.5 5E-13 1.1E-17 125.3 11.9 90 8-97 53-173 (521)
69 TIGR01130 ER_PDI_fam protein d 99.5 2.7E-13 5.9E-18 125.8 10.0 92 7-100 360-457 (462)
70 cd02959 ERp19 Endoplasmic reti 99.4 1.2E-13 2.6E-18 105.8 5.3 91 8-98 16-114 (117)
71 PF13098 Thioredoxin_2: Thiore 99.4 4.3E-13 9.3E-18 101.2 7.5 86 8-93 2-112 (112)
72 PHA02125 thioredoxin-like prot 99.4 1.9E-12 4E-17 91.3 9.5 70 15-92 2-72 (75)
73 cd02952 TRP14_like Human TRX-r 99.4 1.2E-12 2.7E-17 100.2 9.0 84 9-93 19-118 (119)
74 TIGR02738 TrbB type-F conjugat 99.4 3.6E-12 7.8E-17 102.0 11.6 86 10-96 49-152 (153)
75 TIGR00412 redox_disulf_2 small 99.4 2.4E-12 5.2E-17 91.0 9.3 73 15-93 2-75 (76)
76 TIGR00385 dsbE periplasmic pro 99.4 3.3E-12 7.1E-17 104.3 9.9 88 9-98 61-172 (173)
77 cd03010 TlpA_like_DsbE TlpA-li 99.4 4.7E-12 1E-16 97.8 9.8 79 10-89 24-126 (127)
78 TIGR02187 GlrX_arch Glutaredox 99.4 3.3E-12 7.2E-17 107.9 9.4 81 11-95 133-214 (215)
79 PRK15412 thiol:disulfide inter 99.3 5.9E-12 1.3E-16 103.9 10.0 87 10-98 67-177 (185)
80 TIGR02740 TraF-like TraF-like 99.3 1.2E-11 2.5E-16 108.0 12.3 88 10-98 165-265 (271)
81 PRK00293 dipZ thiol:disulfide 99.3 3.4E-12 7.4E-17 122.1 9.7 88 9-97 472-570 (571)
82 cd03011 TlpA_like_ScsD_MtbDsbE 99.3 1.2E-11 2.6E-16 94.7 9.5 82 10-92 19-121 (123)
83 PRK03147 thiol-disulfide oxido 99.3 2.3E-11 4.9E-16 98.6 11.3 87 10-96 60-171 (173)
84 KOG1731 FAD-dependent sulfhydr 99.3 1.2E-12 2.7E-17 121.0 2.4 95 3-97 49-153 (606)
85 cd02955 SSP411 TRX domain, SSP 99.3 3.3E-11 7.2E-16 93.1 9.2 88 8-96 12-118 (124)
86 PRK13728 conjugal transfer pro 99.2 1.1E-10 2.3E-15 95.6 10.9 84 15-99 73-173 (181)
87 cd03009 TryX_like_TryX_NRX Try 99.2 6E-11 1.3E-15 92.1 8.4 68 10-77 17-113 (131)
88 cd03008 TryX_like_RdCVF Trypar 99.2 7.4E-11 1.6E-15 93.6 8.8 68 10-77 24-126 (146)
89 cd02973 TRX_GRX_like Thioredox 99.2 4.3E-11 9.3E-16 82.1 6.3 60 14-75 2-61 (67)
90 PLN02919 haloacid dehalogenase 99.2 8.2E-11 1.8E-15 119.6 11.0 89 10-98 419-537 (1057)
91 cd02964 TryX_like_family Trypa 99.2 7.5E-11 1.6E-15 91.9 8.4 62 10-72 16-106 (132)
92 PF13905 Thioredoxin_8: Thiore 99.2 1.2E-10 2.6E-15 85.2 8.8 61 11-72 1-89 (95)
93 cd02966 TlpA_like_family TlpA- 99.2 1.6E-10 3.4E-15 85.9 9.1 71 11-82 19-116 (116)
94 cd02967 mauD Methylamine utili 99.2 1.1E-10 2.3E-15 88.2 8.1 63 10-72 20-102 (114)
95 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 2.2E-10 4.9E-15 83.4 8.9 77 10-90 11-87 (89)
96 cd03012 TlpA_like_DipZ_like Tl 99.1 4.2E-10 9E-15 86.9 8.8 74 10-83 22-125 (126)
97 cd02958 UAS UAS family; UAS is 99.1 1.4E-09 3.1E-14 82.6 9.9 90 8-97 14-111 (114)
98 PF08534 Redoxin: Redoxin; In 99.0 2.1E-09 4.6E-14 84.8 9.3 83 9-91 26-144 (146)
99 PTZ00056 glutathione peroxidas 99.0 1.2E-09 2.6E-14 91.2 8.1 90 10-100 38-181 (199)
100 PRK11509 hydrogenase-1 operon 99.0 4.9E-09 1.1E-13 81.4 9.9 87 15-101 37-128 (132)
101 PLN02399 phospholipid hydroper 99.0 3.2E-09 7E-14 90.7 9.4 88 10-98 98-235 (236)
102 cd03007 PDI_a_ERp29_N PDIa fam 98.9 4.2E-11 9.2E-16 91.1 -2.8 87 102-207 4-115 (116)
103 TIGR01626 ytfJ_HI0045 conserve 98.9 6.1E-09 1.3E-13 85.6 9.7 84 10-93 58-176 (184)
104 TIGR02661 MauD methylamine deh 98.9 1.1E-08 2.4E-13 84.7 10.9 87 9-96 72-178 (189)
105 COG4232 Thiol:disulfide interc 98.9 1.9E-09 4.1E-14 101.0 5.7 90 8-97 471-568 (569)
106 COG0526 TrxA Thiol-disulfide i 98.9 1.5E-08 3.2E-13 74.5 8.7 83 11-93 32-120 (127)
107 smart00594 UAS UAS domain. 98.9 1.2E-08 2.5E-13 78.7 7.9 86 8-93 24-121 (122)
108 PLN02412 probable glutathione 98.8 9.3E-09 2E-13 83.5 7.6 88 10-98 28-165 (167)
109 cd02960 AGR Anterior Gradient 98.8 6.7E-09 1.4E-13 80.6 6.2 73 7-83 19-99 (130)
110 cd02969 PRX_like1 Peroxiredoxi 98.8 4.8E-08 1.1E-12 79.3 11.2 93 9-101 23-156 (171)
111 cd03006 PDI_a_EFP1_N PDIa fami 98.8 2.5E-10 5.3E-15 86.9 -2.6 83 99-203 9-112 (113)
112 cd00340 GSH_Peroxidase Glutath 98.8 1E-08 2.2E-13 81.8 6.5 82 10-92 21-151 (152)
113 PF13192 Thioredoxin_3: Thiore 98.8 5.6E-08 1.2E-12 68.5 8.4 73 16-94 3-76 (76)
114 TIGR02540 gpx7 putative glutat 98.8 3.4E-08 7.3E-13 78.8 8.1 87 10-96 21-152 (153)
115 PF13899 Thioredoxin_7: Thiore 98.7 1.8E-08 3.9E-13 71.9 4.9 64 8-73 14-81 (82)
116 cd03004 PDI_a_ERdj5_C PDIa fam 98.7 6.9E-10 1.5E-14 82.5 -2.9 83 101-204 3-104 (104)
117 TIGR02196 GlrX_YruB Glutaredox 98.7 1.5E-07 3.3E-12 64.7 8.2 68 15-93 2-73 (74)
118 KOG0913 Thiol-disulfide isomer 98.7 4.7E-09 1E-13 87.7 0.3 85 13-97 41-126 (248)
119 cd03017 PRX_BCP Peroxiredoxin 98.6 1.5E-07 3.3E-12 73.3 8.2 82 11-92 23-138 (140)
120 PF13728 TraF: F plasmid trans 98.6 3E-07 6.6E-12 77.6 9.5 83 10-93 119-214 (215)
121 PTZ00256 glutathione peroxidas 98.6 2.7E-07 5.8E-12 76.0 8.7 88 10-98 39-182 (183)
122 PRK00522 tpx lipid hydroperoxi 98.6 5.7E-07 1.2E-11 72.9 10.2 85 10-94 43-166 (167)
123 cd03003 PDI_a_ERdj5_N PDIa fam 98.6 3.9E-09 8.5E-14 78.1 -2.6 65 101-173 3-83 (101)
124 KOG0914 Thioredoxin-like prote 98.5 7.3E-08 1.6E-12 79.8 4.3 74 7-80 140-221 (265)
125 PF00578 AhpC-TSA: AhpC/TSA fa 98.5 3.6E-07 7.8E-12 69.6 7.3 66 10-75 24-118 (124)
126 cd01659 TRX_superfamily Thiore 98.5 5.5E-07 1.2E-11 58.7 7.2 59 15-74 1-62 (69)
127 cd03015 PRX_Typ2cys Peroxiredo 98.5 5E-07 1.1E-11 73.6 8.4 89 10-98 28-158 (173)
128 KOG2501 Thioredoxin, nucleored 98.5 2.8E-07 6E-12 73.2 6.4 69 10-78 32-130 (157)
129 cd02996 PDI_a_ERp44 PDIa famil 98.5 5.2E-09 1.1E-13 78.5 -3.3 82 101-204 3-108 (108)
130 cd02994 PDI_a_TMX PDIa family, 98.5 7.2E-09 1.6E-13 76.6 -2.7 63 101-173 3-82 (101)
131 cd03002 PDI_a_MPD1_like PDI fa 98.5 9.8E-09 2.1E-13 76.7 -2.2 86 102-204 3-108 (109)
132 TIGR02200 GlrX_actino Glutared 98.5 4.8E-07 1.1E-11 63.0 6.4 69 15-94 2-76 (77)
133 cd03014 PRX_Atyp2cys Peroxired 98.5 1E-06 2.3E-11 69.1 8.7 73 10-82 25-128 (143)
134 KOG4277 Uncharacterized conser 98.4 1.3E-08 2.8E-13 88.0 -2.9 44 126-173 49-111 (468)
135 TIGR03137 AhpC peroxiredoxin. 98.4 2.3E-06 5.1E-11 70.7 10.5 87 10-96 30-155 (187)
136 cd03018 PRX_AhpE_like Peroxire 98.4 2.1E-06 4.6E-11 67.6 9.7 83 11-93 28-147 (149)
137 cd02970 PRX_like2 Peroxiredoxi 98.4 1.4E-06 3E-11 68.4 8.4 39 10-48 22-63 (149)
138 cd02993 PDI_a_APS_reductase PD 98.4 1.6E-08 3.4E-13 76.2 -3.3 83 101-204 3-109 (109)
139 cd03065 PDI_b_Calsequestrin_N 98.4 2.1E-08 4.6E-13 77.0 -3.3 84 101-205 11-116 (120)
140 cd03001 PDI_a_P5 PDIa family, 98.3 2.3E-08 5E-13 73.8 -3.2 81 103-204 4-102 (103)
141 PF00085 Thioredoxin: Thioredo 98.3 6.4E-09 1.4E-13 76.5 -6.2 82 103-206 3-102 (103)
142 PLN02309 5'-adenylylsulfate re 98.3 2.2E-08 4.8E-13 93.0 -4.5 86 101-207 347-456 (457)
143 PF02114 Phosducin: Phosducin; 98.3 3.6E-06 7.9E-11 73.2 9.5 86 10-97 145-238 (265)
144 TIGR00424 APS_reduc 5'-adenyly 98.3 3.1E-08 6.7E-13 92.1 -3.7 85 101-206 353-461 (463)
145 COG2143 Thioredoxin-related pr 98.3 8.6E-06 1.9E-10 64.4 9.9 90 8-97 39-149 (182)
146 TIGR02180 GRX_euk Glutaredoxin 98.3 2.1E-06 4.6E-11 60.8 6.0 71 15-94 1-76 (84)
147 PRK09437 bcp thioredoxin-depen 98.3 6.8E-06 1.5E-10 65.3 9.4 81 10-90 29-146 (154)
148 TIGR03143 AhpF_homolog putativ 98.3 3E-06 6.5E-11 81.3 8.6 150 11-168 366-535 (555)
149 TIGR02739 TraF type-F conjugat 98.3 7.5E-06 1.6E-10 70.7 10.2 88 10-98 149-249 (256)
150 PRK10382 alkyl hydroperoxide r 98.3 1.1E-05 2.3E-10 66.8 10.7 88 10-97 30-156 (187)
151 PRK11200 grxA glutaredoxin 1; 98.2 6.6E-06 1.4E-10 59.0 8.1 77 14-98 2-84 (85)
152 PRK13703 conjugal pilus assemb 98.2 9.1E-06 2E-10 69.8 10.0 87 11-97 143-241 (248)
153 PRK15000 peroxidase; Provision 98.2 1.1E-05 2.3E-10 67.5 9.7 87 10-96 33-161 (200)
154 cd02991 UAS_ETEA UAS family, E 98.2 9.6E-06 2.1E-10 61.9 8.6 89 8-98 14-114 (116)
155 PF14595 Thioredoxin_9: Thiore 98.2 2.8E-06 6E-11 66.1 5.6 74 8-82 38-116 (129)
156 PRK13190 putative peroxiredoxi 98.2 8.4E-06 1.8E-10 68.2 8.8 88 10-97 26-154 (202)
157 cd02999 PDI_a_ERp44_like PDIa 98.2 1.2E-07 2.6E-12 70.4 -2.2 43 126-172 24-82 (100)
158 PRK10877 protein disulfide iso 98.2 4.2E-06 9.1E-11 71.5 6.8 85 9-96 105-230 (232)
159 PTZ00443 Thioredoxin domain-co 98.1 8.9E-08 1.9E-12 81.3 -4.5 66 101-173 32-117 (224)
160 cd02971 PRX_family Peroxiredox 98.1 2E-05 4.4E-10 61.2 9.0 75 10-84 21-130 (140)
161 TIGR03143 AhpF_homolog putativ 98.1 1.4E-05 3E-10 76.7 9.1 79 11-93 475-554 (555)
162 PRK10606 btuE putative glutath 98.1 9.8E-06 2.1E-10 66.8 6.9 38 10-48 24-63 (183)
163 cd03023 DsbA_Com1_like DsbA fa 98.1 3.4E-05 7.5E-10 60.5 9.9 33 10-42 4-36 (154)
164 cd02995 PDI_a_PDI_a'_C PDIa fa 98.1 2.3E-07 5E-12 68.3 -2.6 65 102-173 3-84 (104)
165 cd02968 SCO SCO (an acronym fo 98.1 1.3E-05 2.7E-10 62.6 6.8 33 10-42 21-54 (142)
166 cd02976 NrdH NrdH-redoxin (Nrd 98.0 4.2E-05 9.1E-10 52.1 7.9 67 15-92 2-72 (73)
167 PRK15317 alkyl hydroperoxide r 98.0 2.7E-05 5.8E-10 74.1 9.1 84 11-98 116-199 (517)
168 TIGR02183 GRXA Glutaredoxin, G 98.0 3.8E-05 8.2E-10 55.3 7.7 78 15-100 2-85 (86)
169 KOG3414 Component of the U4/U6 98.0 4.5E-05 9.8E-10 58.1 8.3 91 7-97 19-120 (142)
170 PTZ00137 2-Cys peroxiredoxin; 98.0 5.6E-05 1.2E-09 65.6 10.1 88 10-97 97-225 (261)
171 KOG0911 Glutaredoxin-related p 98.0 5.1E-06 1.1E-10 69.4 3.2 77 10-87 16-93 (227)
172 cd02998 PDI_a_ERp38 PDIa famil 98.0 7.2E-07 1.6E-11 65.7 -2.0 64 103-173 4-86 (105)
173 cd03005 PDI_a_ERp46 PDIa famil 97.9 3.5E-07 7.6E-12 67.3 -3.9 62 103-173 4-84 (102)
174 PF13462 Thioredoxin_4: Thiore 97.9 0.00019 4E-09 57.1 11.4 82 10-95 11-162 (162)
175 cd03016 PRX_1cys Peroxiredoxin 97.9 5.9E-05 1.3E-09 63.1 8.8 97 13-109 28-167 (203)
176 PRK13189 peroxiredoxin; Provis 97.9 0.00011 2.5E-09 62.3 10.4 100 10-109 34-176 (222)
177 PF06110 DUF953: Eukaryotic pr 97.9 4.5E-05 9.8E-10 58.3 7.0 66 9-74 17-98 (119)
178 PRK13599 putative peroxiredoxi 97.9 0.00014 3E-09 61.5 10.7 100 10-109 27-169 (215)
179 TIGR01126 pdi_dom protein disu 97.9 9.6E-07 2.1E-11 64.7 -2.2 61 127-206 20-100 (102)
180 cd03020 DsbA_DsbC_DsbG DsbA fa 97.9 3.1E-05 6.7E-10 64.3 6.6 80 10-93 76-197 (197)
181 KOG0910 Thioredoxin-like prote 97.9 8.5E-07 1.8E-11 69.9 -3.1 62 105-173 49-126 (150)
182 PRK13191 putative peroxiredoxi 97.8 0.00016 3.5E-09 61.1 10.1 88 10-97 32-161 (215)
183 PF03190 Thioredox_DsbH: Prote 97.8 4.4E-05 9.4E-10 61.5 6.2 70 8-78 34-117 (163)
184 cd02992 PDI_a_QSOX PDIa family 97.8 1.5E-06 3.2E-11 66.0 -2.7 64 103-173 5-89 (114)
185 PF13848 Thioredoxin_6: Thiore 97.8 0.00021 4.5E-09 58.0 9.8 83 13-95 97-184 (184)
186 TIGR03140 AhpF alkyl hydropero 97.8 0.00012 2.7E-09 69.6 9.3 85 11-99 117-201 (515)
187 cd02963 TRX_DnaJ TRX domain, D 97.7 3.3E-06 7.1E-11 63.8 -1.7 44 126-173 30-90 (111)
188 cd02954 DIM1 Dim1 family; Dim1 97.7 2.9E-06 6.4E-11 64.4 -2.2 44 126-173 20-79 (114)
189 TIGR02190 GlrX-dom Glutaredoxi 97.7 7.4E-05 1.6E-09 52.8 4.8 74 10-93 5-78 (79)
190 cd02965 HyaE HyaE family; HyaE 97.7 9.5E-06 2.1E-10 61.3 0.2 75 89-173 2-94 (111)
191 cd02956 ybbN ybbN protein fami 97.7 3.7E-06 8E-11 61.3 -2.1 44 126-173 18-77 (96)
192 cd03419 GRX_GRXh_1_2_like Glut 97.7 0.0001 2.3E-09 51.9 5.5 58 15-76 2-63 (82)
193 cd02997 PDI_a_PDIR PDIa family 97.7 2.1E-06 4.5E-11 63.2 -3.6 62 104-173 5-86 (104)
194 PTZ00253 tryparedoxin peroxida 97.7 0.00041 8.8E-09 57.8 9.8 88 10-97 35-164 (199)
195 PHA03050 glutaredoxin; Provisi 97.6 5.5E-05 1.2E-09 57.0 3.9 63 14-77 14-80 (108)
196 KOG1672 ATP binding protein [P 97.6 0.00011 2.5E-09 60.1 5.9 72 10-82 83-155 (211)
197 PRK11657 dsbG disulfide isomer 97.6 0.00057 1.2E-08 59.1 10.3 84 10-94 116-249 (251)
198 cd03000 PDI_a_TMX3 PDIa family 97.6 8E-06 1.7E-10 60.6 -1.4 44 126-173 21-83 (104)
199 cd02981 PDI_b_family Protein D 97.6 0.00065 1.4E-08 49.4 8.7 81 8-95 14-96 (97)
200 KOG3425 Uncharacterized conser 97.6 0.00032 6.9E-09 53.1 6.9 65 10-74 24-104 (128)
201 PRK10954 periplasmic protein d 97.5 0.00066 1.4E-08 56.9 9.5 33 10-42 36-71 (207)
202 cd03019 DsbA_DsbA DsbA family, 97.5 0.00071 1.5E-08 54.6 9.4 33 10-42 14-46 (178)
203 PF02966 DIM1: Mitosis protein 97.5 0.00073 1.6E-08 52.1 8.7 89 7-96 16-116 (133)
204 cd02985 TRX_CDSP32 TRX family, 97.5 8.1E-06 1.8E-10 60.7 -2.1 44 126-173 21-82 (103)
205 cd02983 P5_C P5 family, C-term 97.5 0.00088 1.9E-08 52.1 9.2 75 27-101 40-119 (130)
206 PF07912 ERp29_N: ERp29, N-ter 97.5 0.0011 2.4E-08 50.5 9.3 90 8-99 18-121 (126)
207 KOG1731 FAD-dependent sulfhydr 97.5 7.6E-06 1.6E-10 76.6 -2.9 63 104-173 44-127 (606)
208 PHA02278 thioredoxin-like prot 97.5 1.4E-05 3E-10 59.7 -1.3 44 126-173 20-83 (103)
209 PF00462 Glutaredoxin: Glutare 97.5 0.00042 9.2E-09 46.0 6.0 54 15-75 1-58 (60)
210 cd03029 GRX_hybridPRX5 Glutare 97.5 0.00043 9.3E-09 47.8 6.1 69 15-93 3-71 (72)
211 cd02962 TMX2 TMX2 family; comp 97.5 7.8E-06 1.7E-10 65.4 -3.2 44 126-173 53-119 (152)
212 TIGR02194 GlrX_NrdH Glutaredox 97.4 0.001 2.2E-08 45.9 7.7 67 15-91 1-70 (72)
213 PF01216 Calsequestrin: Calseq 97.4 0.0012 2.5E-08 58.8 9.6 95 11-106 51-153 (383)
214 PRK09381 trxA thioredoxin; Pro 97.4 1.4E-05 3E-10 59.7 -2.3 65 102-173 6-86 (109)
215 cd02066 GRX_family Glutaredoxi 97.4 0.00061 1.3E-08 45.9 6.1 57 15-78 2-62 (72)
216 PF13848 Thioredoxin_6: Thiore 97.4 0.00071 1.5E-08 54.8 7.5 85 28-116 7-94 (184)
217 cd02961 PDI_a_family Protein D 97.4 9.1E-06 2E-10 58.7 -3.6 42 128-173 23-82 (101)
218 cd02972 DsbA_family DsbA famil 97.3 0.00079 1.7E-08 48.0 6.6 59 15-73 1-91 (98)
219 cd02948 TRX_NDPK TRX domain, T 97.3 2.2E-05 4.8E-10 58.2 -1.9 44 126-173 23-82 (102)
220 TIGR02189 GlrX-like_plant Glut 97.3 0.00052 1.1E-08 50.8 5.3 59 15-77 10-72 (99)
221 PF05768 DUF836: Glutaredoxin- 97.3 0.0014 3E-08 46.6 6.9 77 14-94 1-81 (81)
222 cd02957 Phd_like Phosducin (Ph 97.3 4E-05 8.6E-10 57.9 -1.2 43 127-173 31-87 (113)
223 cd03073 PDI_b'_ERp72_ERp57 PDI 97.2 0.0022 4.8E-08 48.4 8.0 73 24-96 31-110 (111)
224 COG3118 Thioredoxin domain-con 97.2 4.1E-05 8.8E-10 66.8 -2.3 66 101-173 25-108 (304)
225 cd03072 PDI_b'_ERp44 PDIb' fam 97.1 0.0035 7.6E-08 47.3 8.5 87 10-98 15-109 (111)
226 KOG0907 Thioredoxin [Posttrans 97.1 4.7E-05 1E-09 57.1 -2.0 43 127-173 28-85 (106)
227 cd02989 Phd_like_TxnDC9 Phosdu 97.1 8.3E-05 1.8E-09 56.3 -1.0 43 127-173 29-86 (113)
228 KOG2603 Oligosaccharyltransfer 97.1 0.0023 5E-08 56.2 7.6 92 11-102 60-171 (331)
229 cd03418 GRX_GRXb_1_3_like Glut 97.1 0.0035 7.7E-08 43.2 7.3 55 15-76 2-61 (75)
230 PF07449 HyaE: Hydrogenase-1 e 97.1 0.0017 3.6E-08 48.7 5.8 75 14-88 28-106 (107)
231 TIGR02181 GRX_bact Glutaredoxi 97.1 0.0013 2.8E-08 46.1 5.0 55 15-76 1-59 (79)
232 PRK10329 glutaredoxin-like pro 97.0 0.0022 4.9E-08 45.6 6.2 72 15-97 3-77 (81)
233 KOG0912 Thiol-disulfide isomer 97.0 0.00028 6.1E-09 61.7 1.4 61 105-173 2-83 (375)
234 cd02950 TxlA TRX-like protein 96.9 8.9E-05 1.9E-09 58.5 -2.7 44 126-173 26-88 (142)
235 PRK10996 thioredoxin 2; Provis 96.9 7.6E-05 1.6E-09 58.7 -3.1 43 127-173 59-117 (139)
236 cd02984 TRX_PICOT TRX domain, 96.8 0.00018 3.9E-09 52.2 -1.0 43 127-173 21-79 (97)
237 cd02953 DsbDgamma DsbD gamma f 96.8 0.00018 3.8E-09 53.2 -1.1 41 127-171 18-81 (104)
238 cd03027 GRX_DEP Glutaredoxin ( 96.8 0.0062 1.3E-07 42.0 6.8 54 15-75 3-60 (73)
239 COG0695 GrxC Glutaredoxin and 96.8 0.0048 1.1E-07 43.7 6.2 69 15-90 3-74 (80)
240 TIGR01068 thioredoxin thioredo 96.8 0.00011 2.4E-09 53.3 -2.7 42 128-173 22-79 (101)
241 cd02987 Phd_like_Phd Phosducin 96.8 7E-05 1.5E-09 61.3 -4.2 44 126-173 89-146 (175)
242 KOG0908 Thioredoxin-like prote 96.7 0.00018 3.8E-09 61.2 -2.2 61 132-194 31-106 (288)
243 PTZ00051 thioredoxin; Provisio 96.7 0.00021 4.5E-09 52.0 -1.7 43 127-173 25-82 (98)
244 cd02986 DLP Dim1 family, Dim1- 96.7 0.00024 5.2E-09 53.8 -1.4 44 126-173 20-79 (114)
245 cd02988 Phd_like_VIAF Phosduci 96.7 0.00012 2.6E-09 60.8 -3.4 43 127-173 109-163 (192)
246 cd02975 PfPDO_like_N Pyrococcu 96.5 0.00054 1.2E-08 51.8 -0.6 40 132-173 32-86 (113)
247 PRK15317 alkyl hydroperoxide r 96.4 0.011 2.3E-07 56.5 7.8 139 11-168 18-175 (517)
248 PF13743 Thioredoxin_5: Thiore 96.3 0.015 3.3E-07 47.5 7.2 28 17-44 2-29 (176)
249 PHA02125 thioredoxin-like prot 96.3 0.00052 1.1E-08 47.9 -1.3 34 132-167 8-51 (75)
250 PF11009 DUF2847: Protein of u 96.3 0.035 7.5E-07 41.5 8.2 83 7-89 15-104 (105)
251 PLN00410 U5 snRNP protein, DIM 96.2 0.00065 1.4E-08 53.6 -1.6 44 126-173 29-89 (142)
252 KOG3170 Conserved phosducin-li 96.2 0.024 5.3E-07 46.9 7.4 87 7-97 107-201 (240)
253 TIGR00411 redox_disulf_1 small 96.0 0.0013 2.7E-08 46.1 -0.6 35 132-168 9-59 (82)
254 cd03067 PDI_b_PDIR_N PDIb fami 96.0 0.037 8E-07 40.8 6.8 85 10-95 18-110 (112)
255 PRK10638 glutaredoxin 3; Provi 95.9 0.0099 2.1E-07 42.1 3.4 56 15-77 4-63 (83)
256 cd03028 GRX_PICOT_like Glutare 95.8 0.005 1.1E-07 44.5 1.6 49 21-76 21-73 (90)
257 cd02959 ERp19 Endoplasmic reti 95.7 0.00062 1.3E-08 51.9 -3.5 44 126-173 25-88 (117)
258 COG1225 Bcp Peroxiredoxin [Pos 95.7 0.13 2.8E-06 41.3 9.6 87 10-96 29-155 (157)
259 TIGR03140 AhpF alkyl hydropero 95.5 0.052 1.1E-06 51.7 8.0 140 11-168 18-176 (515)
260 cd02949 TRX_NTR TRX domain, no 95.4 0.0028 6E-08 46.2 -1.0 42 128-173 21-78 (97)
261 TIGR00365 monothiol glutaredox 95.4 0.007 1.5E-07 44.5 1.1 49 21-76 25-77 (97)
262 cd03069 PDI_b_ERp57 PDIb famil 95.3 0.19 4.1E-06 37.2 8.7 80 9-96 16-103 (104)
263 COG1651 DsbG Protein-disulfide 95.3 0.19 4E-06 42.9 9.8 38 56-97 206-243 (244)
264 PTZ00062 glutaredoxin; Provisi 95.2 0.0019 4.1E-08 54.1 -2.6 42 128-173 25-73 (204)
265 cd03066 PDI_b_Calsequestrin_mi 94.8 0.41 8.8E-06 35.2 9.2 80 10-96 18-100 (102)
266 PRK12759 bifunctional gluaredo 94.6 0.04 8.7E-07 51.1 4.1 55 15-76 4-70 (410)
267 KOG1752 Glutaredoxin and relat 94.5 0.11 2.4E-06 38.8 5.5 58 15-77 16-78 (104)
268 cd02947 TRX_family TRX family; 94.5 0.0065 1.4E-07 42.4 -1.0 42 128-173 18-74 (93)
269 PF01323 DSBA: DSBA-like thior 94.5 0.43 9.3E-06 38.7 9.7 36 56-94 158-193 (193)
270 KOG3171 Conserved phosducin-li 94.3 0.069 1.5E-06 44.7 4.5 84 11-96 159-250 (273)
271 TIGR00412 redox_disulf_2 small 94.2 0.012 2.6E-07 41.1 -0.1 38 132-173 8-58 (76)
272 PRK10824 glutaredoxin-4; Provi 94.0 0.03 6.4E-07 42.6 1.6 53 21-77 28-81 (115)
273 cd02951 SoxW SoxW family; SoxW 93.9 0.0074 1.6E-07 46.0 -1.9 18 155-172 77-94 (125)
274 cd02973 TRX_GRX_like Thioredox 93.7 0.016 3.4E-07 39.0 -0.4 35 132-168 9-58 (67)
275 PRK09301 circadian clock prote 93.4 0.32 6.8E-06 36.1 6.1 76 10-85 4-80 (103)
276 TIGR02654 circ_KaiB circadian 93.3 0.37 8E-06 34.7 6.1 74 12-85 3-77 (87)
277 cd02982 PDI_b'_family Protein 93.2 0.019 4.1E-07 41.8 -0.7 38 132-171 22-77 (103)
278 cd02952 TRP14_like Human TRX-r 93.2 0.014 3E-07 44.7 -1.5 40 132-173 38-101 (119)
279 cd02978 KaiB_like KaiB-like fa 92.2 0.63 1.4E-05 32.3 5.9 67 14-80 3-70 (72)
280 TIGR01295 PedC_BrcD bacterioci 92.1 0.021 4.6E-07 43.7 -1.6 40 132-173 33-101 (122)
281 cd03013 PRX5_like Peroxiredoxi 91.7 0.093 2E-06 41.8 1.5 53 11-63 29-88 (155)
282 PF13417 GST_N_3: Glutathione 91.5 2 4.3E-05 29.3 8.0 73 17-99 1-73 (75)
283 PRK00293 dipZ thiol:disulfide 90.9 0.012 2.6E-07 56.9 -5.2 44 126-173 480-546 (571)
284 cd03060 GST_N_Omega_like GST_N 90.4 0.69 1.5E-05 31.3 4.8 53 16-71 2-54 (71)
285 PF09673 TrbC_Ftype: Type-F co 89.8 1.5 3.3E-05 33.1 6.6 42 28-74 36-80 (113)
286 cd02974 AhpF_NTD_N Alkyl hydro 88.9 5.3 0.00011 29.1 8.7 73 11-96 19-93 (94)
287 PF00837 T4_deiodinase: Iodoth 88.7 2.9 6.2E-05 35.8 8.1 37 8-44 99-135 (237)
288 cd03040 GST_N_mPGES2 GST_N fam 88.3 2.8 6E-05 28.6 6.6 75 15-98 2-77 (77)
289 cd03026 AhpF_NTD_C TRX-GRX-lik 88.0 0.21 4.5E-06 36.0 0.7 34 132-167 22-70 (89)
290 TIGR02742 TrbC_Ftype type-F co 88.0 1.2 2.5E-05 34.6 4.9 43 54-96 60-114 (130)
291 cd03051 GST_N_GTT2_like GST_N 87.9 0.8 1.7E-05 30.7 3.6 58 16-74 2-60 (74)
292 KOG2507 Ubiquitin regulatory p 87.7 3.9 8.6E-05 37.8 8.7 89 8-96 15-110 (506)
293 TIGR02740 TraF-like TraF-like 87.0 0.11 2.3E-06 45.6 -1.6 42 126-171 172-238 (271)
294 cd03031 GRX_GRX_like Glutaredo 86.2 2.4 5.2E-05 33.6 5.9 54 15-75 2-69 (147)
295 COG3634 AhpF Alkyl hydroperoxi 85.3 2 4.2E-05 39.2 5.4 82 10-95 115-196 (520)
296 COG3019 Predicted metal-bindin 84.9 7.5 0.00016 30.5 7.8 76 12-97 25-104 (149)
297 KOG0913 Thiol-disulfide isomer 84.6 0.046 1E-06 46.3 -4.8 68 102-179 27-111 (248)
298 cd03041 GST_N_2GST_N GST_N fam 84.0 3 6.6E-05 28.6 5.0 74 15-96 2-76 (77)
299 COG2761 FrnE Predicted dithiol 82.6 3.8 8.2E-05 34.8 5.9 44 56-102 175-218 (225)
300 KOG2792 Putative cytochrome C 82.5 7.9 0.00017 33.6 7.7 87 10-97 138-275 (280)
301 cd00570 GST_N_family Glutathio 82.4 1.2 2.6E-05 28.8 2.4 53 16-71 2-55 (71)
302 PF06053 DUF929: Domain of unk 81.6 7.5 0.00016 33.6 7.4 57 8-72 55-112 (249)
303 TIGR02738 TrbB type-F conjugat 81.3 1.3 2.8E-05 35.4 2.5 24 126-153 56-79 (153)
304 cd02977 ArsC_family Arsenate R 80.5 1.5 3.3E-05 32.2 2.5 21 16-36 2-22 (105)
305 cd03068 PDI_b_ERp72 PDIb famil 80.1 21 0.00046 26.3 9.5 77 12-95 20-106 (107)
306 COG4545 Glutaredoxin-related p 80.0 0.85 1.8E-05 31.8 0.9 63 16-78 5-77 (85)
307 COG3531 Predicted protein-disu 79.9 3.1 6.7E-05 34.6 4.3 43 55-97 164-209 (212)
308 cd03045 GST_N_Delta_Epsilon GS 79.2 1.8 4E-05 29.1 2.4 55 16-71 2-57 (74)
309 cd03059 GST_N_SspA GST_N famil 79.0 3.9 8.5E-05 27.3 4.1 70 16-95 2-71 (73)
310 cd03011 TlpA_like_ScsD_MtbDsbE 79.0 0.22 4.9E-06 37.3 -2.5 21 128-152 28-48 (123)
311 PF07689 KaiB: KaiB domain; I 77.5 0.96 2.1E-05 32.2 0.6 54 18-71 3-57 (82)
312 PRK13730 conjugal transfer pil 77.3 4.9 0.00011 33.6 4.7 43 53-95 150-192 (212)
313 cd03037 GST_N_GRX2 GST_N famil 76.2 4.9 0.00011 26.9 3.9 68 16-94 2-70 (71)
314 cd03024 DsbA_FrnE DsbA family, 75.8 4.2 9.1E-05 33.1 4.1 36 55-93 165-200 (201)
315 COG1331 Highly conserved prote 74.7 9.2 0.0002 37.6 6.5 69 8-77 40-122 (667)
316 PHA03075 glutaredoxin-like pro 74.7 3.5 7.5E-05 31.3 2.9 30 12-41 2-31 (123)
317 cd03036 ArsC_like Arsenate Red 74.3 3 6.4E-05 31.2 2.6 21 16-36 2-22 (111)
318 cd03035 ArsC_Yffb Arsenate Red 74.2 3 6.5E-05 30.9 2.6 21 16-36 2-22 (105)
319 cd02967 mauD Methylamine utili 73.6 1.8 3.8E-05 31.8 1.2 23 127-153 28-50 (114)
320 PF13778 DUF4174: Domain of un 73.1 38 0.00081 25.6 8.9 82 14-95 12-110 (118)
321 PRK01655 spxA transcriptional 73.1 3.9 8.5E-05 31.6 3.1 22 15-36 2-23 (131)
322 COG1999 Uncharacterized protei 71.4 14 0.00031 30.8 6.3 63 10-72 66-137 (207)
323 PF01216 Calsequestrin: Calseq 70.8 27 0.00058 31.7 8.1 90 11-108 165-258 (383)
324 cd03022 DsbA_HCCA_Iso DsbA fam 69.8 5.4 0.00012 32.1 3.4 34 56-93 158-191 (192)
325 TIGR01617 arsC_related transcr 68.5 4.6 0.0001 30.3 2.5 20 16-35 2-21 (117)
326 cd03055 GST_N_Omega GST_N fami 66.7 16 0.00035 25.7 5.0 55 14-71 18-72 (89)
327 cd03074 PDI_b'_Calsequestrin_C 66.1 55 0.0012 24.7 9.4 89 8-96 17-119 (120)
328 PF09822 ABC_transp_aux: ABC-t 65.5 88 0.0019 26.9 11.7 90 11-100 24-145 (271)
329 cd03025 DsbA_FrnE_like DsbA fa 65.1 11 0.00023 30.4 4.3 28 15-42 3-30 (193)
330 cd03056 GST_N_4 GST_N family, 65.0 5.7 0.00012 26.3 2.2 53 16-71 2-57 (73)
331 cd03032 ArsC_Spx Arsenate Redu 63.9 8.1 0.00018 28.9 3.1 22 15-36 2-23 (115)
332 PRK12559 transcriptional regul 63.8 8 0.00017 29.9 3.1 22 15-36 2-23 (131)
333 PRK11509 hydrogenase-1 operon 63.7 0.47 1E-05 36.9 -3.8 19 155-173 84-102 (132)
334 cd02964 TryX_like_family Trypa 63.6 3.9 8.3E-05 31.2 1.3 25 126-154 23-47 (132)
335 KOG0914 Thioredoxin-like prote 62.5 0.9 1.9E-05 38.4 -2.6 40 132-173 154-216 (265)
336 PF02630 SCO1-SenC: SCO1/SenC; 61.5 8.7 0.00019 31.1 3.0 32 10-41 51-83 (174)
337 KOG1422 Intracellular Cl- chan 60.2 61 0.0013 27.4 7.7 69 22-100 20-88 (221)
338 COG0526 TrxA Thiol-disulfide i 56.5 6.9 0.00015 27.4 1.5 40 132-173 42-100 (127)
339 PRK13344 spxA transcriptional 54.9 14 0.0003 28.6 3.0 21 15-35 2-22 (132)
340 PF04134 DUF393: Protein of un 53.6 19 0.00042 26.4 3.6 43 18-64 2-46 (114)
341 KOG0855 Alkyl hydroperoxide re 52.9 10 0.00023 30.8 2.0 58 4-61 83-145 (211)
342 PF04592 SelP_N: Selenoprotein 51.7 19 0.00041 30.8 3.5 36 6-41 21-56 (238)
343 cd03009 TryX_like_TryX_NRX Try 50.6 10 0.00022 28.5 1.7 25 126-154 24-48 (131)
344 cd03008 TryX_like_RdCVF Trypar 49.2 12 0.00026 29.6 1.8 24 126-153 31-54 (146)
345 COG4232 Thiol:disulfide interc 47.5 1.4 3E-05 42.4 -4.3 36 156-205 528-565 (569)
346 PRK13728 conjugal transfer pro 47.1 11 0.00024 31.0 1.4 24 126-153 75-98 (181)
347 cd02990 UAS_FAF1 UAS family, F 46.7 1.4E+02 0.003 23.3 9.8 88 8-97 18-133 (136)
348 PF08806 Sep15_SelM: Sep15/Sel 43.4 38 0.00083 23.7 3.5 32 65-96 41-75 (78)
349 cd03033 ArsC_15kD Arsenate Red 41.4 32 0.0007 25.8 3.1 22 15-36 2-23 (113)
350 cd03025 DsbA_FrnE_like DsbA fa 41.2 35 0.00075 27.4 3.5 20 56-75 160-179 (193)
351 cd03053 GST_N_Phi GST_N family 40.4 32 0.00068 23.0 2.7 73 15-95 2-75 (76)
352 cd03052 GST_N_GDAP1 GST_N fami 40.1 24 0.00052 23.8 2.1 55 16-74 2-59 (73)
353 COG0386 BtuE Glutathione perox 37.9 2.1E+02 0.0046 23.0 8.0 33 9-42 23-55 (162)
354 cd03049 GST_N_3 GST_N family, 36.1 75 0.0016 20.9 4.1 58 16-74 2-59 (73)
355 TIGR00385 dsbE periplasmic pro 35.5 14 0.0003 29.6 0.3 22 126-151 69-90 (173)
356 PRK14018 trifunctional thiored 35.1 16 0.00035 35.0 0.7 24 126-153 62-85 (521)
357 PRK15412 thiol:disulfide inter 34.2 14 0.00031 30.0 0.2 22 126-151 74-95 (185)
358 cd03021 DsbA_GSTK DsbA family, 31.1 61 0.0013 26.7 3.5 38 56-93 170-208 (209)
359 COG0821 gcpE 1-hydroxy-2-methy 30.7 58 0.0013 29.5 3.4 75 23-97 264-351 (361)
360 KOG2603 Oligosaccharyltransfer 30.6 43 0.00093 29.9 2.5 83 86-170 23-134 (331)
361 COG1393 ArsC Arsenate reductas 30.6 58 0.0013 24.6 3.0 22 15-36 3-24 (117)
362 PRK10387 glutaredoxin 2; Provi 29.2 2.1E+02 0.0046 23.0 6.5 73 17-99 3-75 (210)
363 cd03034 ArsC_ArsC Arsenate Red 27.9 58 0.0013 24.1 2.6 21 16-36 2-22 (112)
364 TIGR00014 arsC arsenate reduct 26.8 62 0.0013 24.1 2.6 21 16-36 2-22 (114)
365 KOG1364 Predicted ubiquitin re 26.7 97 0.0021 28.1 4.1 52 47-98 136-190 (356)
366 PTZ00256 glutathione peroxidas 26.5 22 0.00048 28.8 0.1 33 128-164 49-81 (183)
367 KOG3445 Mitochondrial/chloropl 26.2 1.8E+02 0.0039 22.8 5.0 70 17-98 28-103 (145)
368 PF04551 GcpE: GcpE protein; 25.7 60 0.0013 29.6 2.6 74 23-96 271-358 (359)
369 cd03071 PDI_b'_NRX PDIb' famil 25.5 3E+02 0.0064 20.8 6.7 88 10-97 13-115 (116)
370 cd03038 GST_N_etherase_LigE GS 25.4 89 0.0019 21.3 3.0 66 20-96 13-82 (84)
371 COG5494 Predicted thioredoxin/ 25.0 3.5E+02 0.0077 23.0 6.8 73 17-97 15-88 (265)
372 COG0278 Glutaredoxin-related p 24.9 91 0.002 23.1 3.0 51 20-75 27-80 (105)
373 PLN02412 probable glutathione 24.8 20 0.00044 28.6 -0.5 34 127-164 36-69 (167)
374 PTZ00056 glutathione peroxidas 24.2 18 0.00039 29.9 -0.9 35 126-164 45-79 (199)
375 PF13728 TraF: F plasmid trans 24.2 20 0.00043 30.2 -0.6 40 132-173 130-194 (215)
376 PRK00366 ispG 4-hydroxy-3-meth 23.7 90 0.0019 28.5 3.3 74 23-96 271-356 (360)
377 PLN02399 phospholipid hydroper 23.4 17 0.00037 31.1 -1.2 35 126-164 105-139 (236)
378 PF05364 SecIII_SopE_N: Salmon 23.3 22 0.00048 24.0 -0.4 20 231-250 46-66 (74)
379 cd03061 GST_N_CLIC GST_N famil 23.3 2.9E+02 0.0062 19.8 6.6 69 20-99 19-88 (91)
380 cd03058 GST_N_Tau GST_N family 22.6 1.9E+02 0.0041 18.9 4.2 71 16-96 2-73 (74)
381 PF00255 GSHPx: Glutathione pe 22.4 1.7E+02 0.0037 21.8 4.2 40 8-48 18-59 (108)
382 PLN02919 haloacid dehalogenase 22.4 36 0.00078 35.7 0.7 24 126-153 426-449 (1057)
383 PF01883 DUF59: Domain of unkn 20.7 2.2E+02 0.0047 18.9 4.2 41 6-46 29-70 (72)
384 PF06764 DUF1223: Protein of u 20.6 3.4E+02 0.0074 22.6 6.0 80 15-99 2-100 (202)
385 COG5309 Exo-beta-1,3-glucanase 20.2 80 0.0017 27.8 2.2 80 13-97 76-162 (305)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-29 Score=231.38 Aligned_cols=93 Identities=29% Similarity=0.570 Sum_probs=85.7
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC---CCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCC
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGS 83 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~---~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~ 83 (250)
++.+..++|.||||||+||++++|.|+++|+.+.. .+.++.+||+++.++|++|+|+||||+.+| ||.....|.|+
T Consensus 39 i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~ 118 (493)
T KOG0190|consen 39 INGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSAQDYNGP 118 (493)
T ss_pred hccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcceeccCc
Confidence 55677899999999999999999999999998876 578899999999999999999999999999 88888999999
Q ss_pred CCHHHHHHHHHHhhCCC
Q 025648 84 RTLDSLVAFYSDVTGMN 100 (250)
Q Consensus 84 ~~~~~l~~fi~~~~~~~ 100 (250)
|+.+.|++|+.+..|+.
T Consensus 119 r~adgIv~wl~kq~gPa 135 (493)
T KOG0190|consen 119 READGIVKWLKKQSGPA 135 (493)
T ss_pred ccHHHHHHHHHhccCCC
Confidence 99999999999887655
No 2
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.3e-26 Score=206.26 Aligned_cols=183 Identities=23% Similarity=0.340 Sum_probs=151.4
Q ss_pred cccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCC
Q 025648 7 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRT 85 (250)
Q Consensus 7 ~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~ 85 (250)
....+++++|+||+|||++|+++.|.|++++..+.+...++.+||++++++|++|+|+++||+.+| .+.....|.|.++
T Consensus 43 ~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~ 122 (383)
T KOG0191|consen 43 LLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRN 122 (383)
T ss_pred hhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCccc
Confidence 456788999999999999999999999999999999889999999999999999999999999999 6668899999999
Q ss_pred HHHHHHHHHHhhCCCCCCC--------CCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH----
Q 025648 86 LDSLVAFYSDVTGMNTASL--------DKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF---- 153 (250)
Q Consensus 86 ~~~l~~fi~~~~~~~~~~l--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f---- 153 (250)
.+.+..|+...+...+... +..+++..+.....++++ ..++ |||+||+++ .|+|..+|..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv---~f~a--Pwc~~ck~l--~~~~~~~a~~~~~~~ 195 (383)
T KOG0191|consen 123 AESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLV---EFYA--PWCGHCKKL--APEWEKLAKLLKSKE 195 (383)
T ss_pred HHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEE---EEec--cccHHhhhc--ChHHHHHHHHhccCc
Confidence 9999999998887665433 334455444444444444 2366 999999999 99999999765
Q ss_pred --------------HHHHHHHHhhhhHHHHhhhHHHHHHHhhcccccccchHHHHh-hHH-HHHHHhcccccC
Q 025648 154 --------------VLLRLVYIFLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTYLN-RAI-QLFKTLNEPCKR 210 (250)
Q Consensus 154 --------------~~~~~~i~~fPti~~f~~~~~~~~~~~~~~~~~~~~~~~y~g-r~~-~~~~~l~~~~~t 210 (250)
++.+++|.+|||+++|++|. +.+..|.| |.. .+.+|++...++
T Consensus 196 ~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~--------------~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 196 NVELGKIDATVHKSLASRLEVRGYPTLKLFPPGE--------------EDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred ceEEEeeccchHHHHhhhhcccCCceEEEecCCC--------------cccccccccccHHHHHHHHHhhcCC
Confidence 45899999999999999987 43455556 775 999999955543
No 3
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=99.92 E-value=3.1e-26 Score=196.68 Aligned_cols=239 Identities=43% Similarity=0.688 Sum_probs=192.6
Q ss_pred cccccccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeC
Q 025648 3 LNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHG 82 (250)
Q Consensus 3 ~~~~~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G 82 (250)
.+.++.++..++-+.||+.|||..+..+|.++-....|+.+.++++++....+++.++||+++.|++.+.+..-..+|.|
T Consensus 68 ~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~ 147 (319)
T KOG2640|consen 68 LDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRG 147 (319)
T ss_pred HHhhccccCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeeccccchhhcc
Confidence 45667778889999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhCCCCCCCCCCCccc-cCCC---CCcccccCCCCCCCCCcCCC--ChhhhcCchHHHHHHHHHHHH
Q 025648 83 SRTLDSLVAFYSDVTGMNTASLDKISPDK-VGKA---SNHEKHNNTEEESCPFSWAR--SPENLLQQETYLALATAFVLL 156 (250)
Q Consensus 83 ~~~~~~l~~fi~~~~~~~~~~l~~~~~~~-~~~~---~~~~~~~~~~~~~~~~pw~~--~ck~~~~~~~~~~lA~~f~~~ 156 (250)
.++.++|++|+.+.++..+ .++-.+.+. .... ..-.+........+.+||-. ...+++.+++|..+|..|++.
T Consensus 148 ~r~l~sLv~fy~~i~~~~v-~ie~~d~~~~~~~~ry~~~~~~t~l~~p~~~~~~~~r~~~~~e~~~~~~~~slat~fv~l 226 (319)
T KOG2640|consen 148 ERDLASLVNFYTEITPMSV-LIEILDCTSCLEPVRYVPEGGPTILLAPDGNLFTWARPASKFELLRQETYSSLATVFVSL 226 (319)
T ss_pred cccHHHHHHHHHhhccchh-cccccCcccceeeeEeccccCcccccCcCCCcchhcccccccchhhhhhHHHHHHHHHHH
Confidence 9999999999999997442 222122222 1110 01111122334567778986 567788899999999999999
Q ss_pred HHHHHhhhhHHHHhhhHHHHHHHhhcccccccchHHHHhhHHHHH----HHhcccc--cCCccccccchhhhhcccccce
Q 025648 157 RLVYIFLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTYLNRAIQLF----KTLNEPC--KRSNLQEGALNARAWASKSLAT 230 (250)
Q Consensus 157 ~~~i~~fPti~~f~~~~~~~~~~~~~~~~~~~~~~~y~gr~~~~~----~~l~~~~--~t~~~~~g~~~~~~wa~~~~~~ 230 (250)
+..+..||+.+.+.+-.|.++..+++++.+.+.. .+|..-++ .++ ++| ++.++|++++|+++||++|||+
T Consensus 227 ~~~~li~P~a~~~v~~~~~~~~~~l~l~~l~e~~---f~~~~~~v~~~~~~i-~l~l~~~~~lq~~~~na~~w~~~~la~ 302 (319)
T KOG2640|consen 227 KNNILIFPIAVSRVKFTWADVAPNLSLGILVETS---FERKLHMVDTYLLWI-ELCLTKTRNLQWFAKNARAWASSSLAS 302 (319)
T ss_pred HhhhhhccchhhhhheeHHhhcccccccccchhh---hhhhhhhhhhhhhhh-hhHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999777733 45554222 333 455 6799999999999999999999
Q ss_pred eecCCCCCCCCccccc
Q 025648 231 VSIGDASSSRGACVNE 246 (250)
Q Consensus 231 ~~~~~~~~~~~~~~~~ 246 (250)
||||.+||+.+++..+
T Consensus 303 ~si~~~S~~~~~~~~~ 318 (319)
T KOG2640|consen 303 VSIRTESSSSQIPSQS 318 (319)
T ss_pred hhccCCCcccccCccc
Confidence 9999999987776543
No 4
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.86 E-value=8.9e-22 Score=146.83 Aligned_cols=90 Identities=61% Similarity=1.145 Sum_probs=81.0
Q ss_pred ccccccccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCC-CChhHHHhhCCCccCeEEEE-eCceeEE
Q 025648 2 ALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA-IRPSILSKYGVHGFPTLFLL-NSSMRVR 79 (250)
Q Consensus 2 a~~~~~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~-~~~~l~~~~~I~~~PTi~l~-~g~~~~~ 79 (250)
+++++....+++++|.|||+||++|+.+.|.|+++++.++++.++.+ |.+ .++.++++|+|+++||+++| +| .+.+
T Consensus 9 ~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~v-d~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~ 86 (100)
T cd02999 9 ALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAI-EESSIKPSLLSRYGVVGFPTILLFNST-PRVR 86 (100)
T ss_pred HHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEE-ECCCCCHHHHHhcCCeecCEEEEEcCC-ceeE
Confidence 45667778899999999999999999999999999999998777766 455 78999999999999999999 66 8899
Q ss_pred EeCCCCHHHHHHHH
Q 025648 80 YHGSRTLDSLVAFY 93 (250)
Q Consensus 80 ~~G~~~~~~l~~fi 93 (250)
|.|.++.++|.+||
T Consensus 87 ~~G~~~~~~l~~f~ 100 (100)
T cd02999 87 YNGTRTLDSLAAFY 100 (100)
T ss_pred ecCCCCHHHHHhhC
Confidence 99999999999985
No 5
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-21 Score=153.02 Aligned_cols=95 Identities=21% Similarity=0.315 Sum_probs=89.9
Q ss_pred ccccccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeC
Q 025648 4 NMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHG 82 (250)
Q Consensus 4 ~~~~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G 82 (250)
+...++++.||+|+|||+||++|+.+.|.+++++.+|.+...++.+|.|++.+++.+|+|.++||+++| ||+.+.++.|
T Consensus 54 ~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~d~~vG 133 (150)
T KOG0910|consen 54 DDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKVDRFVG 133 (150)
T ss_pred HHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEeeeecc
Confidence 345688999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred CCCHHHHHHHHHHhhC
Q 025648 83 SRTLDSLVAFYSDVTG 98 (250)
Q Consensus 83 ~~~~~~l~~fi~~~~~ 98 (250)
..+.+.|.++|++.++
T Consensus 134 ~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 134 AVPKEQLRSLIKKFLK 149 (150)
T ss_pred cCCHHHHHHHHHHHhc
Confidence 9999999999999864
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.86 E-value=2.7e-21 Score=147.21 Aligned_cols=86 Identities=20% Similarity=0.277 Sum_probs=79.9
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHH-HhhCCCccCeEEEE-eCceeEEEeCCCC
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSIL-SKYGVHGFPTLFLL-NSSMRVRYHGSRT 85 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~-~~~~I~~~PTi~l~-~g~~~~~~~G~~~ 85 (250)
.+.+++++|+||||||++|+.+.|.|+++++.+++...++.+||+.+.++| ++|+|.++||+++| +|+...+|.|.++
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~~~~~y~G~~~ 105 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSRGPIEYKGPMR 105 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECCccceEEeCCCC
Confidence 578899999999999999999999999999999887778888999999999 58999999999999 8888999999999
Q ss_pred HHHHHHHH
Q 025648 86 LDSLVAFY 93 (250)
Q Consensus 86 ~~~l~~fi 93 (250)
.+.|..|+
T Consensus 106 ~~~i~~~~ 113 (113)
T cd03006 106 APYMEKFV 113 (113)
T ss_pred HHHHHhhC
Confidence 99998873
No 7
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.84 E-value=5.4e-21 Score=161.51 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=115.6
Q ss_pred CCCeEEEEEEc---CCChhHHhhhHHHHHHHHHcCCCC-EEEEEcCCCChhHHHhhCCCccCeEEEE-eCcee-EEEeCC
Q 025648 10 SHEYVAVLFYA---SWCPFSRNFRPSFSVLSSLYSSIP-HFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMR-VRYHGS 83 (250)
Q Consensus 10 ~~~~vlV~Fya---~wC~~C~~~~p~~e~la~~~~~~~-~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~-~~~~G~ 83 (250)
.+...++.|++ +||++|+.+.|.++++++.++++. .+..+|.+++++++++|+|.++||+++| +|+.. .++.|.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 34566777988 999999999999999999997643 2223355589999999999999999999 77776 589999
Q ss_pred CCHHHHHHHHHHhhCCCC--CCCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH--------
Q 025648 84 RTLDSLVAFYSDVTGMNT--ASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF-------- 153 (250)
Q Consensus 84 ~~~~~l~~fi~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f-------- 153 (250)
.+.+++.+||+..++... ..++++..+.+...... +.+..+++ |||++|+.+ .+....++...
T Consensus 98 ~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~p---v~I~~F~a--~~C~~C~~~--~~~l~~l~~~~~~i~~~~v 170 (215)
T TIGR02187 98 PAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEP---VRIEVFVT--PTCPYCPYA--VLMAHKFALANDKILGEMI 170 (215)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCC---cEEEEEEC--CCCCCcHHH--HHHHHHHHHhcCceEEEEE
Confidence 999999999998875432 23333333333222111 11223456 999999999 88888887643
Q ss_pred -------HHHHHHHHhhhhHHHHhhh
Q 025648 154 -------VLLRLVYIFLPTLLIFAQF 172 (250)
Q Consensus 154 -------~~~~~~i~~fPti~~f~~~ 172 (250)
+..+|+|.++||++++.+|
T Consensus 171 D~~~~~~~~~~~~V~~vPtl~i~~~~ 196 (215)
T TIGR02187 171 EANENPDLAEKYGVMSVPKIVINKGV 196 (215)
T ss_pred eCCCCHHHHHHhCCccCCEEEEecCC
Confidence 2489999999999998654
No 8
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.83 E-value=6.5e-20 Score=135.89 Aligned_cols=90 Identities=32% Similarity=0.616 Sum_probs=83.1
Q ss_pred cccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCC
Q 025648 7 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRT 85 (250)
Q Consensus 7 ~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~ 85 (250)
..+.+++++|+||++||++|+.+.|.|+++++.+++...+..+|+++++.++++|+|+++||+++| +|+...+|.|.++
T Consensus 13 i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~ 92 (103)
T PF00085_consen 13 INESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRN 92 (103)
T ss_dssp HTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSS
T ss_pred HHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEEEEEECCCC
Confidence 344689999999999999999999999999999997667777799999999999999999999999 8899999999999
Q ss_pred HHHHHHHHHHh
Q 025648 86 LDSLVAFYSDV 96 (250)
Q Consensus 86 ~~~l~~fi~~~ 96 (250)
.++|.+||+++
T Consensus 93 ~~~l~~~i~~~ 103 (103)
T PF00085_consen 93 AESLIEFIEKH 103 (103)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 99999999875
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.83 E-value=1.9e-20 Score=139.46 Aligned_cols=84 Identities=23% Similarity=0.445 Sum_probs=78.9
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCHH
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLD 87 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~~ 87 (250)
+.+++++|+|||+||++|+.+.|.|+++++.+++...++.+||++++.+|++|+|+++||+++| +|+.+.+|.|.++.+
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~ 95 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKE 95 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCCcccCCCCCCHH
Confidence 4568999999999999999999999999999998778888899999999999999999999999 888899999999999
Q ss_pred HHHHH
Q 025648 88 SLVAF 92 (250)
Q Consensus 88 ~l~~f 92 (250)
+|.+|
T Consensus 96 ~l~~f 100 (101)
T cd03003 96 SLVKF 100 (101)
T ss_pred HHHhh
Confidence 99887
No 10
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.83 E-value=1.7e-20 Score=140.28 Aligned_cols=87 Identities=22% Similarity=0.337 Sum_probs=79.8
Q ss_pred cccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eC-ceeEEEeCCC
Q 025648 7 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NS-SMRVRYHGSR 84 (250)
Q Consensus 7 ~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g-~~~~~~~G~~ 84 (250)
..+.+++++|+|||+||++|+.+.|.|+++++.+.+...++.+||++++++|++|+|+++||+++| +| +.+.+|.|.+
T Consensus 15 i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~ 94 (104)
T cd03004 15 VLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASKYHSYNGWH 94 (104)
T ss_pred HhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCCceEccCCC
Confidence 345677999999999999999999999999999988788888899999999999999999999999 66 8899999998
Q ss_pred C-HHHHHHHH
Q 025648 85 T-LDSLVAFY 93 (250)
Q Consensus 85 ~-~~~l~~fi 93 (250)
+ .++|.+||
T Consensus 95 ~~~~~l~~~i 104 (104)
T cd03004 95 RDADSILEFI 104 (104)
T ss_pred CCHHHHHhhC
Confidence 7 99999885
No 11
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.81 E-value=1.2e-19 Score=137.75 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=79.8
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC-CCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCH
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTL 86 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~-~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~ 86 (250)
+.+++++|+||||||++|+.+.|.++++++.+++ ...+..+|++.++.++.+++|+++||+++| +|+.+.++.|.++.
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~ 101 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVTFYHDSSFTK 101 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEEEEecCCCCH
Confidence 4689999999999999999999999999999975 356777899999999999999999999999 88888888999999
Q ss_pred HHHHHHHHH
Q 025648 87 DSLVAFYSD 95 (250)
Q Consensus 87 ~~l~~fi~~ 95 (250)
+.|.+||.+
T Consensus 102 ~~l~~~i~~ 110 (111)
T cd02963 102 QHVVDFVRK 110 (111)
T ss_pred HHHHHHHhc
Confidence 999999986
No 12
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.81 E-value=1.6e-19 Score=132.96 Aligned_cols=86 Identities=22% Similarity=0.388 Sum_probs=79.4
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCHH
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLD 87 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~~ 87 (250)
+.+++++|+|||+||++|+.+.|.++++++.+++...+..+|++.++.++++|+|.++||+++| +|+.+.++.|.++.+
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 89 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDGFQGAQPEE 89 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeeeecCCCCHH
Confidence 4478999999999999999999999999999987667778899999999999999999999999 888888999999999
Q ss_pred HHHHHHH
Q 025648 88 SLVAFYS 94 (250)
Q Consensus 88 ~l~~fi~ 94 (250)
+|.+||+
T Consensus 90 ~l~~~l~ 96 (96)
T cd02956 90 QLRQMLD 96 (96)
T ss_pred HHHHHhC
Confidence 9999874
No 13
>PHA02278 thioredoxin-like protein
Probab=99.80 E-value=6.8e-19 Score=131.86 Aligned_cols=84 Identities=10% Similarity=0.106 Sum_probs=73.2
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCC----hhHHHhhCCCccCeEEEE-eCceeEEEeCC
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGVHGFPTLFLL-NSSMRVRYHGS 83 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~----~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~ 83 (250)
+.+++++|+|||+||++|+.+.|.++++++.+.....+..+|.+.+ ++++++|+|.++||+++| +|+.+.+..|.
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~~~~G~ 91 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVKKYEDQ 91 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEEEEeCC
Confidence 5789999999999999999999999999988655444566676654 689999999999999999 89999999999
Q ss_pred CCHHHHHHH
Q 025648 84 RTLDSLVAF 92 (250)
Q Consensus 84 ~~~~~l~~f 92 (250)
.+.+.|.++
T Consensus 92 ~~~~~l~~~ 100 (103)
T PHA02278 92 VTPMQLQEL 100 (103)
T ss_pred CCHHHHHhh
Confidence 998888764
No 14
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.79 E-value=4.1e-19 Score=133.86 Aligned_cols=86 Identities=30% Similarity=0.576 Sum_probs=76.0
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC------CCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCc-eeEE
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS------IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSS-MRVR 79 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~------~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~-~~~~ 79 (250)
.+.+++++|.||||||++|+++.|.|+++++.+++ ...+..+||+.+++++++|+|+++||+++| +|+ ....
T Consensus 15 i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~~~~~~ 94 (108)
T cd02996 15 LQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGMMMKRE 94 (108)
T ss_pred HhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCcCccee
Confidence 35678999999999999999999999999987632 356778899999999999999999999999 777 4589
Q ss_pred EeCCCCHHHHHHHH
Q 025648 80 YHGSRTLDSLVAFY 93 (250)
Q Consensus 80 ~~G~~~~~~l~~fi 93 (250)
|.|.++.++|.+||
T Consensus 95 ~~g~~~~~~l~~fi 108 (108)
T cd02996 95 YRGQRSVEALAEFV 108 (108)
T ss_pred cCCCCCHHHHHhhC
Confidence 99999999999985
No 15
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.79 E-value=4.1e-19 Score=133.57 Aligned_cols=88 Identities=27% Similarity=0.546 Sum_probs=78.3
Q ss_pred cccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCC--ChhHHHhhCCCccCeEEEE-eCc-----eeE
Q 025648 7 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI--RPSILSKYGVHGFPTLFLL-NSS-----MRV 78 (250)
Q Consensus 7 ~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~--~~~l~~~~~I~~~PTi~l~-~g~-----~~~ 78 (250)
..+.+++++|.|||+||++|+++.|.|+++++.+++...+..+||+. +++++++|+|+++||+++| +|+ ...
T Consensus 14 i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~ 93 (109)
T cd03002 14 VHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVE 93 (109)
T ss_pred HhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcccccccc
Confidence 34567889999999999999999999999999998877777778888 8899999999999999999 554 568
Q ss_pred EEeCCCCHHHHHHHHH
Q 025648 79 RYHGSRTLDSLVAFYS 94 (250)
Q Consensus 79 ~~~G~~~~~~l~~fi~ 94 (250)
.|.|.++.++|.+||.
T Consensus 94 ~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 94 DYNGERSAKAIVDFVL 109 (109)
T ss_pred cccCccCHHHHHHHhC
Confidence 8999999999999973
No 16
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.79 E-value=3.7e-19 Score=134.87 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=70.9
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCC
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRT 85 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~ 85 (250)
+.+++++|+|||+||++|+.|.|.++++++++++...+..+|.+++++++++|+|.++||+++| +|+.+.+..|..+
T Consensus 12 ~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~~ 89 (114)
T cd02954 12 EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGTGN 89 (114)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCCCC
Confidence 4688999999999999999999999999999998777778899999999999999999999999 9999988888544
No 17
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.9e-19 Score=152.29 Aligned_cols=94 Identities=20% Similarity=0.434 Sum_probs=89.4
Q ss_pred ccccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCC
Q 025648 6 VHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSR 84 (250)
Q Consensus 6 ~~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~ 84 (250)
+.....+||+|+||+|||++|+.+.|.+++++..|+|...++.+|||+++.++.+|||+++||++.| +|+++..|.|..
T Consensus 38 ~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~q 117 (304)
T COG3118 38 IQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQ 117 (304)
T ss_pred HHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCC
Confidence 3445567999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHhhCC
Q 025648 85 TLDSLVAFYSDVTGM 99 (250)
Q Consensus 85 ~~~~l~~fi~~~~~~ 99 (250)
..+.|++|++++.+.
T Consensus 118 Pesqlr~~ld~~~~~ 132 (304)
T COG3118 118 PESQLRQFLDKVLPA 132 (304)
T ss_pred cHHHHHHHHHHhcCh
Confidence 999999999999987
No 18
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.78 E-value=1.2e-18 Score=133.74 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=81.9
Q ss_pred cccccCCCeEEEEEEcCCChh--HH--hhhHHHHHHHHHc--CCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCcee
Q 025648 5 MVHKNSHEYVAVLFYASWCPF--SR--NFRPSFSVLSSLY--SSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMR 77 (250)
Q Consensus 5 ~~~~~~~~~vlV~Fya~wC~~--C~--~~~p~~e~la~~~--~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~ 77 (250)
....+++.+++++||++||++ |+ .+.|.+++++.++ ++.+.++.+|++++++++++|||+++||+++| +|+.+
T Consensus 21 ~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~~v 100 (120)
T cd03065 21 QVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDEVI 100 (120)
T ss_pred HHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEEECCEEE
Confidence 345667789999999999987 99 8899999999998 77778888899999999999999999999999 88766
Q ss_pred EEEeCCCCHHHHHHHHHHhh
Q 025648 78 VRYHGSRTLDSLVAFYSDVT 97 (250)
Q Consensus 78 ~~~~G~~~~~~l~~fi~~~~ 97 (250)
. |.|.++.+.|.+||.+..
T Consensus 101 ~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 101 E-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred E-eeCCCCHHHHHHHHHHHh
Confidence 5 999999999999999764
No 19
>PRK09381 trxA thioredoxin; Provisional
Probab=99.78 E-value=2.6e-18 Score=129.49 Aligned_cols=90 Identities=23% Similarity=0.409 Sum_probs=83.6
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCH
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTL 86 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~ 86 (250)
.+.+++++|+||++||++|+.+.|.++++++.+++...+..+|++..+.++++|+|.++||+++| +|+.+.++.|..+.
T Consensus 18 ~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~ 97 (109)
T PRK09381 18 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSK 97 (109)
T ss_pred hcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEEEEecCCCCH
Confidence 45688999999999999999999999999999988777888899999999999999999999999 88889999999999
Q ss_pred HHHHHHHHHhh
Q 025648 87 DSLVAFYSDVT 97 (250)
Q Consensus 87 ~~l~~fi~~~~ 97 (250)
++|.++|.+.+
T Consensus 98 ~~l~~~i~~~~ 108 (109)
T PRK09381 98 GQLKEFLDANL 108 (109)
T ss_pred HHHHHHHHHhc
Confidence 99999998865
No 20
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.78 E-value=2.4e-18 Score=127.85 Aligned_cols=81 Identities=22% Similarity=0.532 Sum_probs=73.5
Q ss_pred EEEEEEcCCChhHHhhhHHHHHHHHHcCC-CCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCHHHHHH
Q 025648 14 VAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLDSLVA 91 (250)
Q Consensus 14 vlV~Fya~wC~~C~~~~p~~e~la~~~~~-~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~~~l~~ 91 (250)
++|+|||+||++|+.+.|.|+++++.+++ ...++.+|+++++.++++|+|+++||+++| +|+ +.+|.|.++.++|.+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~G~~~~~~l~~ 97 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV-FRRYQGPRDKEDLIS 97 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC-EEEecCCCCHHHHHH
Confidence 78999999999999999999999998765 367778899999999999999999999999 766 589999999999999
Q ss_pred HHHH
Q 025648 92 FYSD 95 (250)
Q Consensus 92 fi~~ 95 (250)
||++
T Consensus 98 ~i~~ 101 (101)
T cd02994 98 FIEE 101 (101)
T ss_pred HHhC
Confidence 9864
No 21
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.77 E-value=2e-18 Score=128.03 Aligned_cols=82 Identities=28% Similarity=0.584 Sum_probs=75.1
Q ss_pred CeEEEEEEcCCChhHHhhhHHHHHHHHHcCC---CCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCHH
Q 025648 12 EYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLD 87 (250)
Q Consensus 12 ~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~---~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~~ 87 (250)
++++|.|||+||++|+.+.|.++++++.+++ ...+..+||+.+..++++|+|.++||+++| +|+.+.+|.|.++.+
T Consensus 17 ~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~ 96 (102)
T cd03005 17 GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLD 96 (102)
T ss_pred CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCCeeeEeeCCCCHH
Confidence 3599999999999999999999999999876 466777899999999999999999999999 888888999999999
Q ss_pred HHHHHH
Q 025648 88 SLVAFY 93 (250)
Q Consensus 88 ~l~~fi 93 (250)
+|.+||
T Consensus 97 ~l~~~i 102 (102)
T cd03005 97 SLKEFV 102 (102)
T ss_pred HHHhhC
Confidence 998875
No 22
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.77 E-value=5e-18 Score=127.11 Aligned_cols=85 Identities=13% Similarity=0.113 Sum_probs=71.3
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCC---hhHHHhhCCCccCeEEEE-eCceeEEEeCCC
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR---PSILSKYGVHGFPTLFLL-NSSMRVRYHGSR 84 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~---~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~ 84 (250)
..+++++|+|||+||++|+.+.|.++++++.++++ .+..+|.+++ .+++++|+|+++||+++| +|+.+.++.| .
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v-~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G-~ 90 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDV-VFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKIHEEEG-I 90 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCC-EEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEEEEEeC-C
Confidence 45899999999999999999999999999999555 4444566665 489999999999999999 8999999999 4
Q ss_pred CHHHHHHHHHH
Q 025648 85 TLDSLVAFYSD 95 (250)
Q Consensus 85 ~~~~l~~fi~~ 95 (250)
..++|.+.+..
T Consensus 91 ~~~~l~~~~~~ 101 (103)
T cd02985 91 GPDELIGDVLY 101 (103)
T ss_pred CHHHHHHHHHh
Confidence 56777776654
No 23
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.77 E-value=2.6e-18 Score=127.67 Aligned_cols=86 Identities=28% Similarity=0.556 Sum_probs=78.5
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eC-ceeEEEeCCCC
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NS-SMRVRYHGSRT 85 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g-~~~~~~~G~~~ 85 (250)
.+.+++++|+||++||++|+++.|.|+++++.+++...++..|++++++++++|+|+++||+++| +| .....|.|.++
T Consensus 15 ~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~ 94 (103)
T cd03001 15 LNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRT 94 (103)
T ss_pred hcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcceeecCCCCC
Confidence 45567799999999999999999999999999988788888899999999999999999999999 55 56789999999
Q ss_pred HHHHHHHH
Q 025648 86 LDSLVAFY 93 (250)
Q Consensus 86 ~~~l~~fi 93 (250)
.++|.+|+
T Consensus 95 ~~~l~~~~ 102 (103)
T cd03001 95 AKAIVSAA 102 (103)
T ss_pred HHHHHHHh
Confidence 99999986
No 24
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.77 E-value=3.8e-18 Score=127.76 Aligned_cols=88 Identities=30% Similarity=0.566 Sum_probs=77.7
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC---CCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCC
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRT 85 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~---~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~ 85 (250)
..+++++|.|||+||++|+.+.|.|+++++.+++ ...+..+|++..++++++|+|.++||+++|+++...+|.|.++
T Consensus 13 ~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~~~~~G~~~ 92 (104)
T cd03000 13 RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLAYNYRGPRT 92 (104)
T ss_pred ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCceeecCCCC
Confidence 4467999999999999999999999999999853 3566667898899999999999999999995556788999999
Q ss_pred HHHHHHHHHHh
Q 025648 86 LDSLVAFYSDV 96 (250)
Q Consensus 86 ~~~l~~fi~~~ 96 (250)
.++|.+|+.+.
T Consensus 93 ~~~l~~~~~~~ 103 (104)
T cd03000 93 KDDIVEFANRV 103 (104)
T ss_pred HHHHHHHHHhh
Confidence 99999999874
No 25
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.76 E-value=6.1e-18 Score=126.38 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=75.7
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC-CCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCC
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRT 85 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~-~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~ 85 (250)
.+.+++++|+|||+||++|+.+.|.++++++.+++ ...+..+|.+ .++++++|+|+++||+++| +|+.+.+..|. +
T Consensus 14 i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~ 91 (102)
T cd02948 14 LSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGELVAVIRGA-N 91 (102)
T ss_pred HccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEEEEEEecC-C
Confidence 35688999999999999999999999999999975 4567777887 7889999999999999999 88888888885 8
Q ss_pred HHHHHHHHHH
Q 025648 86 LDSLVAFYSD 95 (250)
Q Consensus 86 ~~~l~~fi~~ 95 (250)
.+.|.++|.+
T Consensus 92 ~~~~~~~i~~ 101 (102)
T cd02948 92 APLLNKTITE 101 (102)
T ss_pred hHHHHHHHhh
Confidence 8999998875
No 26
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.76 E-value=5e-18 Score=143.64 Aligned_cols=89 Identities=24% Similarity=0.428 Sum_probs=81.1
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCHHH
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLDS 88 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~~~ 88 (250)
.+++++|+||||||++|+++.|.|+++++.+++...++.+|++++++++++|+|+++||+++| +|+.+..+.|.++.++
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~ 130 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEK 130 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHH
Confidence 357999999999999999999999999999998777888899999999999999999999999 7776666678899999
Q ss_pred HHHHHHHhhC
Q 025648 89 LVAFYSDVTG 98 (250)
Q Consensus 89 l~~fi~~~~~ 98 (250)
|.+|+.+...
T Consensus 131 L~~fi~~~~~ 140 (224)
T PTZ00443 131 LAAFALGDFK 140 (224)
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 27
>PRK10996 thioredoxin 2; Provisional
Probab=99.75 E-value=1.3e-17 Score=131.54 Aligned_cols=90 Identities=18% Similarity=0.380 Sum_probs=82.0
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCH
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTL 86 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~ 86 (250)
.+.+++++|+||++||++|+.+.|.|+++++.+.+...+..+|++.+++++++|+|.++||+++| +|+.+.++.|..+.
T Consensus 49 i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~ 128 (139)
T PRK10996 49 LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPK 128 (139)
T ss_pred HhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCH
Confidence 35688999999999999999999999999999887666666788899999999999999999999 89999999999999
Q ss_pred HHHHHHHHHhh
Q 025648 87 DSLVAFYSDVT 97 (250)
Q Consensus 87 ~~l~~fi~~~~ 97 (250)
+.|.+|+++++
T Consensus 129 e~l~~~l~~~~ 139 (139)
T PRK10996 129 APFDSWLNEAL 139 (139)
T ss_pred HHHHHHHHHhC
Confidence 99999998763
No 28
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.75 E-value=9.2e-18 Score=124.15 Aligned_cols=88 Identities=30% Similarity=0.583 Sum_probs=80.6
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCC
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRT 85 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~ 85 (250)
..+++++|+||++||++|+.+.|.++++++.+++ ...+..+|+++++.++++|+|+++||+++| +|+.+.+|.|..+
T Consensus 11 ~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~ 90 (102)
T TIGR01126 11 LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKPVDYEGGRD 90 (102)
T ss_pred ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcceeecCCCC
Confidence 3788999999999999999999999999999987 577788899999999999999999999999 6665889999999
Q ss_pred HHHHHHHHHHh
Q 025648 86 LDSLVAFYSDV 96 (250)
Q Consensus 86 ~~~l~~fi~~~ 96 (250)
.++|..||+++
T Consensus 91 ~~~l~~~i~~~ 101 (102)
T TIGR01126 91 LEAIVEFVNEK 101 (102)
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 29
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.75 E-value=7.6e-18 Score=127.32 Aligned_cols=85 Identities=24% Similarity=0.513 Sum_probs=73.7
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCC-CEEEEEcCCC-ChhHHH-hhCCCccCeEEEE-e-CceeEEEeCC
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI-PHFAIEESAI-RPSILS-KYGVHGFPTLFLL-N-SSMRVRYHGS 83 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~-~~v~~~d~~~-~~~l~~-~~~I~~~PTi~l~-~-g~~~~~~~G~ 83 (250)
+.+++++|.||++||++|+++.|.|+++++.+++. ..+..+|++. ...++. .|+|+++||+++| + +.....|.|.
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~ 98 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSE 98 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCCCCCceeccCC
Confidence 46789999999999999999999999999999863 5677778887 577886 4999999999999 4 4578899995
Q ss_pred -CCHHHHHHHH
Q 025648 84 -RTLDSLVAFY 93 (250)
Q Consensus 84 -~~~~~l~~fi 93 (250)
++.++|+.||
T Consensus 99 ~~~~~~l~~f~ 109 (109)
T cd02993 99 QRDVDSLLMFV 109 (109)
T ss_pred CCCHHHHHhhC
Confidence 8999999885
No 30
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.74 E-value=1.5e-17 Score=123.68 Aligned_cols=85 Identities=26% Similarity=0.591 Sum_probs=75.6
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcC--CCCEEEEEcCCC--ChhHHHhhCCCccCeEEEE-eCceeEEEeCC
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEESAI--RPSILSKYGVHGFPTLFLL-NSSMRVRYHGS 83 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~--~~~~v~~~d~~~--~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~ 83 (250)
+.+++++|+||++||++|+++.|.++++++.++ +...++..|++. ++.++++|+|+++||+++| +|+.+.+|.|.
T Consensus 15 ~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 94 (104)
T cd02997 15 KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKFVEKYEGE 94 (104)
T ss_pred hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCeeEEeCCC
Confidence 456699999999999999999999999999887 445566668887 8999999999999999999 88888999999
Q ss_pred CCHHHHHHHH
Q 025648 84 RTLDSLVAFY 93 (250)
Q Consensus 84 ~~~~~l~~fi 93 (250)
.+.++|.+||
T Consensus 95 ~~~~~l~~~l 104 (104)
T cd02997 95 RTAEDIIEFM 104 (104)
T ss_pred CCHHHHHhhC
Confidence 9999999875
No 31
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.6e-17 Score=124.83 Aligned_cols=86 Identities=20% Similarity=0.365 Sum_probs=74.0
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCH
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTL 86 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~ 86 (250)
...+++++|+|||+|||+|+.+.|.+++|+.+|++ ..+..+|.|+.++++++++|+..||+++| +|+.+.++.|....
T Consensus 18 ~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~ 96 (106)
T KOG0907|consen 18 EAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA 96 (106)
T ss_pred hCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence 44579999999999999999999999999999999 55555577778999999999999999999 89999999986543
Q ss_pred HHHHHHHHH
Q 025648 87 DSLVAFYSD 95 (250)
Q Consensus 87 ~~l~~fi~~ 95 (250)
.+.+.+.+
T Consensus 97 -~l~~~i~~ 104 (106)
T KOG0907|consen 97 -ELEKKIAK 104 (106)
T ss_pred -HHHHHHHh
Confidence 77776654
No 32
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.73 E-value=2.4e-17 Score=121.89 Aligned_cols=93 Identities=18% Similarity=0.316 Sum_probs=83.4
Q ss_pred ccccccccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEE
Q 025648 2 ALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRY 80 (250)
Q Consensus 2 a~~~~~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~ 80 (250)
|++-...+.+++++|.||++||+.|+.+.|.++++++.+++...+..+|.+++++++.+++|.++||+++| +|+.+.++
T Consensus 4 ~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~ 83 (97)
T cd02949 4 ALRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEI 83 (97)
T ss_pred hHHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEE
Confidence 45555677899999999999999999999999999999987566677788899999999999999999999 88899999
Q ss_pred eCCCCHHHHHHHHH
Q 025648 81 HGSRTLDSLVAFYS 94 (250)
Q Consensus 81 ~G~~~~~~l~~fi~ 94 (250)
.|..+.++|.++++
T Consensus 84 ~g~~~~~~~~~~l~ 97 (97)
T cd02949 84 SGVKMKSEYREFIE 97 (97)
T ss_pred eCCccHHHHHHhhC
Confidence 99999999998873
No 33
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.73 E-value=4.3e-18 Score=145.93 Aligned_cols=99 Identities=18% Similarity=0.476 Sum_probs=89.1
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC---CCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCC
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSR 84 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~---~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~ 84 (250)
...+..|+|+||||||+||+++.|+|+++.-.+++ -+.|+..||+..+.++.++||+|||||.+|.|.....|.|+|
T Consensus 40 nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R 119 (468)
T KOG4277|consen 40 NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGR 119 (468)
T ss_pred cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCc
Confidence 44567899999999999999999999999988876 468888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhCCCCCCCCC
Q 025648 85 TLDSLVAFYSDVTGMNTASLDK 106 (250)
Q Consensus 85 ~~~~l~~fi~~~~~~~~~~l~~ 106 (250)
+.++|++|..+..+.-...++.
T Consensus 120 ~Kd~iieFAhR~a~aiI~pi~e 141 (468)
T KOG4277|consen 120 EKDAIIEFAHRCAAAIIEPINE 141 (468)
T ss_pred cHHHHHHHHHhcccceeeecCh
Confidence 9999999999988766655543
No 34
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.73 E-value=4e-17 Score=120.23 Aligned_cols=89 Identities=27% Similarity=0.424 Sum_probs=81.2
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCH
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTL 86 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~ 86 (250)
.+.+++++|.||++||++|+.+.|.++++++.+++...+..+|++.++.++++|+|.++||+++| +|+....+.|..+.
T Consensus 11 ~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~ 90 (101)
T TIGR01068 11 ASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDRSVGALPK 90 (101)
T ss_pred hhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEeeeecCCCCH
Confidence 34567999999999999999999999999999987677777799999999999999999999999 88888899999999
Q ss_pred HHHHHHHHHh
Q 025648 87 DSLVAFYSDV 96 (250)
Q Consensus 87 ~~l~~fi~~~ 96 (250)
++|.+||.+.
T Consensus 91 ~~l~~~l~~~ 100 (101)
T TIGR01068 91 AALKQLINKN 100 (101)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 35
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.72 E-value=4.6e-17 Score=127.98 Aligned_cols=89 Identities=11% Similarity=0.155 Sum_probs=78.9
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEE-EE-eCc-eeEEEeC---
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLF-LL-NSS-MRVRYHG--- 82 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~-l~-~g~-~~~~~~G--- 82 (250)
..+++++|+|||+||++|+.+.|.++++++++++...+..+|.|++++++++|+|++.||++ +| +|+ .+.+..|
T Consensus 21 ~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~ 100 (142)
T PLN00410 21 EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNN 100 (142)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeEEEEEeccccc
Confidence 46889999999999999999999999999999998888888999999999999999887777 66 777 6777778
Q ss_pred -----CCCHHHHHHHHHHhh
Q 025648 83 -----SRTLDSLVAFYSDVT 97 (250)
Q Consensus 83 -----~~~~~~l~~fi~~~~ 97 (250)
..+.++|++-++...
T Consensus 101 k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 101 KINWALKDKQEFIDIVETVY 120 (142)
T ss_pred ccccccCCHHHHHHHHHHHH
Confidence 578889988888765
No 36
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.72 E-value=2.4e-17 Score=122.43 Aligned_cols=87 Identities=29% Similarity=0.572 Sum_probs=75.6
Q ss_pred ccccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCc--eeEEE
Q 025648 6 VHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSS--MRVRY 80 (250)
Q Consensus 6 ~~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~--~~~~~ 80 (250)
...+.+++++|+||++||++|+.+.|.|+++++.+++ ...++.+|++++ +++..+++.++||+++| +|+ ...+|
T Consensus 13 ~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~~~~~~~ 91 (104)
T cd02995 13 VVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDKSNPIKY 91 (104)
T ss_pred HHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCcCCceEc
Confidence 3345568999999999999999999999999999887 356677788776 68899999999999999 666 67899
Q ss_pred eCCCCHHHHHHHH
Q 025648 81 HGSRTLDSLVAFY 93 (250)
Q Consensus 81 ~G~~~~~~l~~fi 93 (250)
.|.++.++|.+||
T Consensus 92 ~g~~~~~~l~~fi 104 (104)
T cd02995 92 EGDRTLEDLIKFI 104 (104)
T ss_pred cCCcCHHHHHhhC
Confidence 9999999999986
No 37
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.71 E-value=6.9e-17 Score=121.76 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=77.1
Q ss_pred cCCCeEEEEEEcCC--ChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCC
Q 025648 9 NSHEYVAVLFYASW--CPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRT 85 (250)
Q Consensus 9 ~~~~~vlV~Fya~w--C~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~ 85 (250)
..+++++|.||++| ||+|+.+.|.+++++++|++...+..+|.+++++++.+|+|+++||+++| +|+.+.++.|..+
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~~~~G~~~ 104 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVGVLAGIRD 104 (111)
T ss_pred hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEEEEeCccC
Confidence 56789999999997 99999999999999999999877888899999999999999999999999 9999999999999
Q ss_pred HHHHHH
Q 025648 86 LDSLVA 91 (250)
Q Consensus 86 ~~~l~~ 91 (250)
.+++..
T Consensus 105 ~~e~~~ 110 (111)
T cd02965 105 WDEYVA 110 (111)
T ss_pred HHHHhh
Confidence 888753
No 38
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.71 E-value=3.7e-17 Score=121.55 Aligned_cols=88 Identities=33% Similarity=0.645 Sum_probs=76.5
Q ss_pred ccccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcC--CCCEEEEEcCCC-ChhHHHhhCCCccCeEEEE-eC-ceeEEE
Q 025648 6 VHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEESAI-RPSILSKYGVHGFPTLFLL-NS-SMRVRY 80 (250)
Q Consensus 6 ~~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~--~~~~v~~~d~~~-~~~l~~~~~I~~~PTi~l~-~g-~~~~~~ 80 (250)
...+.+++++|+||++||++|+++.|.++++++.++ +...+...|++. +++++++|+|.++||+++| +| +....|
T Consensus 13 ~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~ 92 (105)
T cd02998 13 VVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGSTEPVKY 92 (105)
T ss_pred HhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCCCCcccc
Confidence 344556799999999999999999999999999987 345666678888 8999999999999999999 44 678889
Q ss_pred eCCCCHHHHHHHH
Q 025648 81 HGSRTLDSLVAFY 93 (250)
Q Consensus 81 ~G~~~~~~l~~fi 93 (250)
.|.++.++|.+||
T Consensus 93 ~g~~~~~~l~~~i 105 (105)
T cd02998 93 EGGRDLEDLVKFV 105 (105)
T ss_pred CCccCHHHHHhhC
Confidence 9999999999885
No 39
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.71 E-value=1.3e-16 Score=126.32 Aligned_cols=93 Identities=18% Similarity=0.345 Sum_probs=78.8
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCC--CChhHHHhhCCCccCeEEEE--eCceeEEEeCC
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA--IRPSILSKYGVHGFPTLFLL--NSSMRVRYHGS 83 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~--~~~~l~~~~~I~~~PTi~l~--~g~~~~~~~G~ 83 (250)
+..+++++|+|||+||++|+.+.|.++++++.+.+...+..++.+ ....++.+|+|.++||+++| +|+.+.++.|.
T Consensus 17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~ 96 (142)
T cd02950 17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGL 96 (142)
T ss_pred HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCC
Confidence 457889999999999999999999999999999764334333433 34689999999999999999 68888999999
Q ss_pred CCHHHHHHHHHHhhCCC
Q 025648 84 RTLDSLVAFYSDVTGMN 100 (250)
Q Consensus 84 ~~~~~l~~fi~~~~~~~ 100 (250)
.+.++|.++|.+.+...
T Consensus 97 ~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 97 QPKQVLAQNLDALVAGE 113 (142)
T ss_pred CCHHHHHHHHHHHHcCC
Confidence 99999999999987543
No 40
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.71 E-value=2.7e-17 Score=125.10 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=73.0
Q ss_pred ccCCCeEEEEEEc--CCCh---hHHhhhHHHHHHHHHcCCCCEEEEEcC-----CCChhHHHhhCCC--ccCeEEEE-eC
Q 025648 8 KNSHEYVAVLFYA--SWCP---FSRNFRPSFSVLSSLYSSIPHFAIEES-----AIRPSILSKYGVH--GFPTLFLL-NS 74 (250)
Q Consensus 8 ~~~~~~vlV~Fya--~wC~---~C~~~~p~~e~la~~~~~~~~v~~~d~-----~~~~~l~~~~~I~--~~PTi~l~-~g 74 (250)
...++.+||.||| |||+ +|++++|.+.+.+.. +.++.+|| .++.+||++|+|+ +||||++| +|
T Consensus 15 v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g 90 (116)
T cd03007 15 IPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGG 90 (116)
T ss_pred HhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCC
Confidence 4577889999999 9999 888888888776654 56888898 4678999999999 99999999 66
Q ss_pred c--eeEEEeCC-CCHHHHHHHHHHh
Q 025648 75 S--MRVRYHGS-RTLDSLVAFYSDV 96 (250)
Q Consensus 75 ~--~~~~~~G~-~~~~~l~~fi~~~ 96 (250)
. ....|.|. |+.++|++||.+.
T Consensus 91 ~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 91 DFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCccCCCCcccHHHHHHHHHhc
Confidence 4 56899997 9999999999875
No 41
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.68 E-value=1.4e-16 Score=147.78 Aligned_cols=107 Identities=25% Similarity=0.502 Sum_probs=92.6
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCC---CEEEEEcCCCChhHHHhhCCCccCeEEEE-eCce-eEEEeCC
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI---PHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSM-RVRYHGS 83 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~---~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~-~~~~~G~ 83 (250)
+.+++++|+|||+||++|+++.|.++++++.+.+. +.++.+||+.++++|++|+|.++||+++| +|+. +.+|.|.
T Consensus 16 ~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~ 95 (462)
T TIGR01130 16 KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGP 95 (462)
T ss_pred hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCccceeEecCC
Confidence 46779999999999999999999999999987642 67788899999999999999999999999 6776 7999999
Q ss_pred CCHHHHHHHHHHhhCCCCCCCC-CCCccccCCC
Q 025648 84 RTLDSLVAFYSDVTGMNTASLD-KISPDKVGKA 115 (250)
Q Consensus 84 ~~~~~l~~fi~~~~~~~~~~l~-~~~~~~~~~~ 115 (250)
++.++|.+|+.+.+++.+..++ .++++.++..
T Consensus 96 ~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~ 128 (462)
T TIGR01130 96 RDADGIVKYMKKQSGPAVKEIETVADLEAFLAD 128 (462)
T ss_pred CCHHHHHHHHHHhcCCCceeecCHHHHHHHHhc
Confidence 9999999999999988877664 3455655544
No 42
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.68 E-value=2.2e-16 Score=115.65 Aligned_cols=85 Identities=34% Similarity=0.630 Sum_probs=75.7
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHc--CCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eC-ceeEEEeCCC
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLY--SSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NS-SMRVRYHGSR 84 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~--~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g-~~~~~~~G~~ 84 (250)
.++++++|.||++||++|+.+.|.++++++.+ .+...+..+|++.++.++++|+|+++||+++| ++ ....+|.|..
T Consensus 13 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~ 92 (101)
T cd02961 13 KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPR 92 (101)
T ss_pred hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCcccccCCCCc
Confidence 34459999999999999999999999999999 46677777789889999999999999999999 44 6889999999
Q ss_pred CHHHHHHHH
Q 025648 85 TLDSLVAFY 93 (250)
Q Consensus 85 ~~~~l~~fi 93 (250)
+.++|.+|+
T Consensus 93 ~~~~i~~~~ 101 (101)
T cd02961 93 TLESLVEFI 101 (101)
T ss_pred CHHHHHhhC
Confidence 999998874
No 43
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.68 E-value=4.3e-16 Score=114.59 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=69.9
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCHHHH
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLDSL 89 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~~~l 89 (250)
+++++|.||++||++|+++.|.++++++.+.....+..+|+++.++++++|+|+++||+++| +|+.+.++.|. +.++|
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l 92 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVDRVSGA-DPKEL 92 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEEEEeCC-CHHHH
Confidence 69999999999999999999999999999644455555688889999999999999999999 88877777774 56777
Q ss_pred HHHH
Q 025648 90 VAFY 93 (250)
Q Consensus 90 ~~fi 93 (250)
.+.|
T Consensus 93 ~~~~ 96 (97)
T cd02984 93 AKKV 96 (97)
T ss_pred HHhh
Confidence 7655
No 44
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.6e-16 Score=145.23 Aligned_cols=165 Identities=21% Similarity=0.292 Sum_probs=123.6
Q ss_pred cccccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcC--CCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCce-eEEE
Q 025648 5 MVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSM-RVRY 80 (250)
Q Consensus 5 ~~~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~--~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~-~~~~ 80 (250)
....+.+..++|.||+|||+||+.+.|.|++++..+. ..+.++..||+....++++++|.++||+++| ++.. ...|
T Consensus 156 ~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~ 235 (383)
T KOG0191|consen 156 ETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYY 235 (383)
T ss_pred hhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccc
Confidence 3345678899999999999999999999999999886 4667777788889999999999999999999 6666 7888
Q ss_pred eCCCCHHHHHHHHHHhhCCC--CCCC---CCCC-ccccCCCC------CcccccCCCCCCCCCcCCCChhhhcCchHHHH
Q 025648 81 HGSRTLDSLVAFYSDVTGMN--TASL---DKIS-PDKVGKAS------NHEKHNNTEEESCPFSWARSPENLLQQETYLA 148 (250)
Q Consensus 81 ~G~~~~~~l~~fi~~~~~~~--~~~l---~~~~-~~~~~~~~------~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~ 148 (250)
.|.|+.+.|..|+.+..+.. ...+ .... +....... .......+...+. |||+||... .|.|..
T Consensus 236 ~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~ 311 (383)
T KOG0191|consen 236 SGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYA--PWCGHCGGF--APVYED 311 (383)
T ss_pred cccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhc--chhhccccc--chhHHH
Confidence 89999999999999998874 1111 1110 11000000 0000011223355 899999999 999998
Q ss_pred HHHHH-------------------HHHHHHHHhhhhHHHHhhhH
Q 025648 149 LATAF-------------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 149 lA~~f-------------------~~~~~~i~~fPti~~f~~~~ 173 (250)
.|... +|++..+.+||++.++..+.
T Consensus 312 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (383)
T KOG0191|consen 312 KAELGYPDLSKIKAAKLDCALLKSLCQKAIVRGYPTIKLYNYGK 355 (383)
T ss_pred HHhccccccccceeeccccccccchhhHhhhhcCceeEeecccc
Confidence 88872 36888999999999887654
No 45
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.67 E-value=6.4e-16 Score=117.71 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=66.9
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCC
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSR 84 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~ 84 (250)
.++++++|+||+|||++|+.+.|.++++++.++++ .+..+|.++.++++++|+|.++||+++| +|+.+.++.|..
T Consensus 20 ~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i-~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g~~ 95 (113)
T cd02989 20 KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLET-KFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVDRIVGFE 95 (113)
T ss_pred hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCC-EEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEEEEECcc
Confidence 45689999999999999999999999999999885 5566688899999999999999999999 898888887643
No 46
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.67 E-value=3.9e-16 Score=124.70 Aligned_cols=74 Identities=26% Similarity=0.413 Sum_probs=67.2
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC-CCEEEEEcCCCChhHHHhhCCCc------cCeEEEE-eCceeEEE
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHG------FPTLFLL-NSSMRVRY 80 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~-~~~v~~~d~~~~~~l~~~~~I~~------~PTi~l~-~g~~~~~~ 80 (250)
+.+++++|+|||+||++|+.+.|.++++++.+++ ...+..+|++++++++++|+|.+ +||+++| +|+++.++
T Consensus 45 ~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~ 124 (152)
T cd02962 45 DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVARR 124 (152)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEEE
Confidence 4567999999999999999999999999999875 36677779999999999999998 9999999 99999999
Q ss_pred eC
Q 025648 81 HG 82 (250)
Q Consensus 81 ~G 82 (250)
.|
T Consensus 125 ~G 126 (152)
T cd02962 125 PY 126 (152)
T ss_pred ec
Confidence 97
No 47
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.67 E-value=2.2e-16 Score=118.01 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=72.5
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHH---HHHHHHcCCCCEEEEEcCCC----ChhHHHhhCCCccCeEEEE-e--Ccee
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYSSIPHFAIEESAI----RPSILSKYGVHGFPTLFLL-N--SSMR 77 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~---e~la~~~~~~~~v~~~d~~~----~~~l~~~~~I~~~PTi~l~-~--g~~~ 77 (250)
++++++++|+||++||++|+.+.|.+ +++++.+.+...+..+|.++ .+.++++|+|+++||+++| . |+.+
T Consensus 8 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~ 87 (104)
T cd02953 8 LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEP 87 (104)
T ss_pred HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence 46789999999999999999999988 67888887533444446554 5789999999999999999 3 6778
Q ss_pred EEEeCCCCHHHHHHHHH
Q 025648 78 VRYHGSRTLDSLVAFYS 94 (250)
Q Consensus 78 ~~~~G~~~~~~l~~fi~ 94 (250)
.++.|.++.++|.++|+
T Consensus 88 ~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 88 LRLPGFLTADEFLEALE 104 (104)
T ss_pred cccccccCHHHHHHHhC
Confidence 89999999999998873
No 48
>PTZ00102 disulphide isomerase; Provisional
Probab=99.66 E-value=4.3e-16 Score=145.71 Aligned_cols=97 Identities=24% Similarity=0.531 Sum_probs=85.7
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC---CCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCC
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSR 84 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~---~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~ 84 (250)
+++++++|+|||+||++|+++.|.|+++++.+.+ ...++.+||+.+.++|++|+|.++||+++| +|+.+ +|.|.+
T Consensus 47 ~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~~ 125 (477)
T PTZ00102 47 TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPV-NYSGGR 125 (477)
T ss_pred hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceE-EecCCC
Confidence 4567999999999999999999999999987753 467788899999999999999999999999 66655 999999
Q ss_pred CHHHHHHHHHHhhCCCCCCCCC
Q 025648 85 TLDSLVAFYSDVTGMNTASLDK 106 (250)
Q Consensus 85 ~~~~l~~fi~~~~~~~~~~l~~ 106 (250)
+.+.|.+|+.+.+++.+..++.
T Consensus 126 ~~~~l~~~l~~~~~~~~~~i~~ 147 (477)
T PTZ00102 126 TADGIVSWIKKLTGPAVTEVES 147 (477)
T ss_pred CHHHHHHHHHHhhCCCceeecC
Confidence 9999999999999988766543
No 49
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.66 E-value=8.2e-16 Score=116.96 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=64.2
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCC
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSR 84 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~ 84 (250)
+++++|+||+|||++|+.+.|.++++++.++++. +..+|++++ .++++|+|.++||+++| +|+.+.++.|..
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~-f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPETK-FVKINAEKA-FLVNYLDIKVLPTLLVYKNGELIDNIVGFE 96 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcE-EEEEEchhh-HHHHhcCCCcCCEEEEEECCEEEEEEecHH
Confidence 4899999999999999999999999999998754 455577777 99999999999999999 999999998843
No 50
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.66 E-value=8.4e-16 Score=117.05 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=76.5
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCcee--EEEeCCC
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMR--VRYHGSR 84 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~--~~~~G~~ 84 (250)
+..+..++|.||++||++|+.+.|.++++++.++. ..+..+|.++.++++.+|+|.++||+++| +|+.. .+|.|..
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~-i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~ 97 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDK-LKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLP 97 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCc-eEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecC
Confidence 34566789999999999999999999999998844 45666688899999999999999999999 55433 3799999
Q ss_pred CHHHHHHHHHHhhC
Q 025648 85 TLDSLVAFYSDVTG 98 (250)
Q Consensus 85 ~~~~l~~fi~~~~~ 98 (250)
+..+|.++|...+.
T Consensus 98 ~~~el~~~i~~i~~ 111 (113)
T cd02975 98 AGYEFASLIEDIVR 111 (113)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999998764
No 51
>PTZ00051 thioredoxin; Provisional
Probab=99.65 E-value=9.7e-16 Score=112.99 Aligned_cols=81 Identities=22% Similarity=0.364 Sum_probs=70.2
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCH
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTL 86 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~ 86 (250)
.+.+++++|+||++||++|+.+.|.++++++.++++.+ ..+|+++..+++++|+|.++||+++| +|+.+.++.|. ..
T Consensus 15 ~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~-~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~ 92 (98)
T PTZ00051 15 LSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVF-VKVDVDELSEVAEKENITSMPTFKVFKNGSVVDTLLGA-ND 92 (98)
T ss_pred HhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEE-EEEECcchHHHHHHCCCceeeEEEEEeCCeEEEEEeCC-CH
Confidence 35678999999999999999999999999999887544 45578888999999999999999999 89999999995 55
Q ss_pred HHHH
Q 025648 87 DSLV 90 (250)
Q Consensus 87 ~~l~ 90 (250)
++|.
T Consensus 93 ~~~~ 96 (98)
T PTZ00051 93 EALK 96 (98)
T ss_pred HHhh
Confidence 5554
No 52
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.9e-16 Score=144.72 Aligned_cols=94 Identities=27% Similarity=0.494 Sum_probs=78.3
Q ss_pred cccccccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCC--CEEEEEcCCCChhHHHhhCCCccCeEEEE-eC--cee
Q 025648 3 LNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI--PHFAIEESAIRPSILSKYGVHGFPTLFLL-NS--SMR 77 (250)
Q Consensus 3 ~~~~~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~--~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g--~~~ 77 (250)
++.+..+.++.|||.||||||+||+++.|+|++|++.|++. +.++..|.+.+. .....|++||||++| .| +.+
T Consensus 376 fd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~~~pag~k~~p 453 (493)
T KOG0190|consen 376 FDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTILFFPAGHKSNP 453 (493)
T ss_pred HHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEEEecCCCCCCC
Confidence 56677889999999999999999999999999999999984 455555554433 345677889999999 33 368
Q ss_pred EEEeCCCCHHHHHHHHHHhhC
Q 025648 78 VRYHGSRTLDSLVAFYSDVTG 98 (250)
Q Consensus 78 ~~~~G~~~~~~l~~fi~~~~~ 98 (250)
..|.|.|+.++|..|+.+..+
T Consensus 454 v~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 454 VIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred cccCCCcchHHHHhhhccCCC
Confidence 999999999999999998876
No 53
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.63 E-value=1.7e-15 Score=114.20 Aligned_cols=87 Identities=13% Similarity=0.158 Sum_probs=71.7
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeE-EE------
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRV-RY------ 80 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~-~~------ 80 (250)
..+++++|.|+|+||++|+.+.|.+++++++|++...+..+|.++.++++++|+|++.||+++| +|+.+. .+
T Consensus 12 ~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~~d~gt~~~~ 91 (114)
T cd02986 12 TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMKVDYGSPDHT 91 (114)
T ss_pred cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEEEecCCCCCc
Confidence 3689999999999999999999999999999998677777899999999999999999999988 776543 22
Q ss_pred --eCC-CCHHHHHHHHHH
Q 025648 81 --HGS-RTLDSLVAFYSD 95 (250)
Q Consensus 81 --~G~-~~~~~l~~fi~~ 95 (250)
++. .+.+++++-++-
T Consensus 92 k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 92 KFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred EEEEEcCchhHHHHHHHH
Confidence 222 245666666654
No 54
>PTZ00102 disulphide isomerase; Provisional
Probab=99.61 E-value=2.7e-15 Score=140.27 Aligned_cols=95 Identities=21% Similarity=0.429 Sum_probs=83.2
Q ss_pred cccccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCc-eeEEE
Q 025648 5 MVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSS-MRVRY 80 (250)
Q Consensus 5 ~~~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~-~~~~~ 80 (250)
....+.+++++|+|||+||++|+.+.|.|+++++.+++ ...++..|++.+..++++++|+++||+++| +|+ ...+|
T Consensus 369 ~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~ 448 (477)
T PTZ00102 369 EIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPY 448 (477)
T ss_pred HHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEe
Confidence 33467789999999999999999999999999999875 456777799999999999999999999999 554 45689
Q ss_pred eCCCCHHHHHHHHHHhhCC
Q 025648 81 HGSRTLDSLVAFYSDVTGM 99 (250)
Q Consensus 81 ~G~~~~~~l~~fi~~~~~~ 99 (250)
.|.++.++|.+||.++...
T Consensus 449 ~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 449 EGERTVEGFKEFVNKHATN 467 (477)
T ss_pred cCcCCHHHHHHHHHHcCCC
Confidence 9999999999999998864
No 55
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.61 E-value=3.5e-15 Score=115.20 Aligned_cols=90 Identities=18% Similarity=0.287 Sum_probs=71.9
Q ss_pred ccCC-CeEEEEEEcCCChhHHhhhHHHH---HHHHHcCC-CCEEEEEcCCC-------------ChhHHHhhCCCccCeE
Q 025648 8 KNSH-EYVAVLFYASWCPFSRNFRPSFS---VLSSLYSS-IPHFAIEESAI-------------RPSILSKYGVHGFPTL 69 (250)
Q Consensus 8 ~~~~-~~vlV~Fya~wC~~C~~~~p~~e---~la~~~~~-~~~v~~~d~~~-------------~~~l~~~~~I~~~PTi 69 (250)
.+++ ++++|.|||+||++|+++.|.+. ++.+.+.+ +..+.+ |.+. ..+++.+|+|.++||+
T Consensus 10 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i-~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 88 (125)
T cd02951 10 AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYI-NIDGDKEVTDFDGEALSEKELARKYRVRFTPTV 88 (125)
T ss_pred HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEE-EccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence 4566 89999999999999999999885 56655544 333333 3333 3689999999999999
Q ss_pred EEE--e-CceeEEEeCCCCHHHHHHHHHHhhC
Q 025648 70 FLL--N-SSMRVRYHGSRTLDSLVAFYSDVTG 98 (250)
Q Consensus 70 ~l~--~-g~~~~~~~G~~~~~~l~~fi~~~~~ 98 (250)
++| + |+.+.++.|..+.+.+.++|+....
T Consensus 89 ~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 89 IFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred EEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999 4 5888899999999999999988764
No 56
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.61 E-value=9e-16 Score=131.82 Aligned_cols=94 Identities=28% Similarity=0.535 Sum_probs=84.8
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHc----C-CCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeE-EE
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLY----S-SIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRV-RY 80 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~----~-~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~-~~ 80 (250)
.+.++.|+|.|||+||++++.++|+|++.++.+ + +.++.+.+||+.+..|+.+|.|..|||+.+| ||..+. .|
T Consensus 10 l~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEY 89 (375)
T KOG0912|consen 10 LDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREY 89 (375)
T ss_pred hccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhh
Confidence 456889999999999999999999999998764 4 4678899999999999999999999999999 888776 89
Q ss_pred eCCCCHHHHHHHHHHhhCCCC
Q 025648 81 HGSRTLDSLVAFYSDVTGMNT 101 (250)
Q Consensus 81 ~G~~~~~~l~~fi~~~~~~~~ 101 (250)
.|.|+.+.|.+||++.+....
T Consensus 90 Rg~RsVeaL~efi~kq~s~~i 110 (375)
T KOG0912|consen 90 RGQRSVEALIEFIEKQLSDPI 110 (375)
T ss_pred ccchhHHHHHHHHHHHhccHH
Confidence 999999999999999876554
No 57
>PLN02309 5'-adenylylsulfate reductase
Probab=99.61 E-value=3e-15 Score=138.41 Aligned_cols=89 Identities=26% Similarity=0.520 Sum_probs=77.2
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCC-CEEEEEcCC-CChhHHH-hhCCCccCeEEEE-eCc-eeEEEeC
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI-PHFAIEESA-IRPSILS-KYGVHGFPTLFLL-NSS-MRVRYHG 82 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~-~~v~~~d~~-~~~~l~~-~~~I~~~PTi~l~-~g~-~~~~~~G 82 (250)
.+.+++++|+||||||++|+.+.|.|+++++.+.+. +.+..+|++ .+..++. +|+|+++||+++| +|. ....|.|
T Consensus 362 ~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~ 441 (457)
T PLN02309 362 ENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFPKNSSRPIKYPS 441 (457)
T ss_pred hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEeCCCCCeeecCC
Confidence 467889999999999999999999999999999763 667777888 7788886 6999999999999 543 5678985
Q ss_pred -CCCHHHHHHHHHHh
Q 025648 83 -SRTLDSLVAFYSDV 96 (250)
Q Consensus 83 -~~~~~~l~~fi~~~ 96 (250)
.++.++|++||...
T Consensus 442 ~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 442 EKRDVDSLLSFVNSL 456 (457)
T ss_pred CCcCHHHHHHHHHHh
Confidence 79999999999874
No 58
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.60 E-value=1.2e-14 Score=104.21 Aligned_cols=83 Identities=27% Similarity=0.496 Sum_probs=73.8
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCHHH
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLDS 88 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~~~ 88 (250)
.+++++|.||++||++|+.+.|.++++++..++ ..+...+++..+.++++|++.++||+++| +|+.+..+.|..+.+.
T Consensus 9 ~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~ 87 (93)
T cd02947 9 SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPK-VKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEE 87 (93)
T ss_pred cCCcEEEEEECCCChhHHHhhHHHHHHHHHCCC-ceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEecCCCHHH
Confidence 348999999999999999999999999998444 45556688888999999999999999999 8888999999999999
Q ss_pred HHHHH
Q 025648 89 LVAFY 93 (250)
Q Consensus 89 l~~fi 93 (250)
|.++|
T Consensus 88 l~~~i 92 (93)
T cd02947 88 LEEFL 92 (93)
T ss_pred HHHHh
Confidence 99887
No 59
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.60 E-value=4.1e-15 Score=113.39 Aligned_cols=85 Identities=28% Similarity=0.479 Sum_probs=66.9
Q ss_pred cccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC---CCEEEEEcCC--CChhHHHhhCCCccCeEEEE-eCcee---
Q 025648 7 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESA--IRPSILSKYGVHGFPTLFLL-NSSMR--- 77 (250)
Q Consensus 7 ~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~---~~~v~~~d~~--~~~~l~~~~~I~~~PTi~l~-~g~~~--- 77 (250)
..+.+++++|+||++||++|+.+.|.|+++++.+++ ...++.+||+ .+++++++|+|+++||+++| ++...
T Consensus 15 i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~~~~~~ 94 (114)
T cd02992 15 LLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFSKEATD 94 (114)
T ss_pred HhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCCccCCC
Confidence 345568999999999999999999999999998753 4666777875 36789999999999999999 44421
Q ss_pred -EEEeCC-CCHHHHHH
Q 025648 78 -VRYHGS-RTLDSLVA 91 (250)
Q Consensus 78 -~~~~G~-~~~~~l~~ 91 (250)
..|.|. +..+++.+
T Consensus 95 ~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 95 GLKQEGPERDVNELRE 110 (114)
T ss_pred CCcccCCccCHHHHHH
Confidence 356665 66666644
No 60
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.59 E-value=5.5e-15 Score=136.75 Aligned_cols=89 Identities=24% Similarity=0.463 Sum_probs=74.8
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCC-CEEEEEcCCCCh-hHH-HhhCCCccCeEEEE-eCc-eeEEEe-
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI-PHFAIEESAIRP-SIL-SKYGVHGFPTLFLL-NSS-MRVRYH- 81 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~-~~v~~~d~~~~~-~l~-~~~~I~~~PTi~l~-~g~-~~~~~~- 81 (250)
.+.+++++|+||||||++|+.+.|.|+++++.+.+. ..+..+|++.+. .++ ++|+|+++||+++| +|. ....|.
T Consensus 368 ~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~ 447 (463)
T TIGR00424 368 EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPS 447 (463)
T ss_pred hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEECCCCCceeCCC
Confidence 457889999999999999999999999999999763 567777877653 454 78999999999999 554 567897
Q ss_pred CCCCHHHHHHHHHHh
Q 025648 82 GSRTLDSLVAFYSDV 96 (250)
Q Consensus 82 G~~~~~~l~~fi~~~ 96 (250)
|.++.++|..||+..
T Consensus 448 g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 448 EKRDVDSLMSFVNLL 462 (463)
T ss_pred CCCCHHHHHHHHHhh
Confidence 589999999999754
No 61
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.58 E-value=2.2e-14 Score=102.15 Aligned_cols=80 Identities=18% Similarity=0.311 Sum_probs=70.4
Q ss_pred EEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHH
Q 025648 14 VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 93 (250)
Q Consensus 14 vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi 93 (250)
.+..||++||++|+.+.|.++++++.++....+..+|.+++++++++|||.++||+++ +|+ .++.|..+.++|.+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~-~g~--~~~~G~~~~~~l~~~l 78 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI-NGD--VEFIGAPTKEELVEAI 78 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE-CCE--EEEecCCCHHHHHHHH
Confidence 4678999999999999999999999987656666778888999999999999999986 775 4888999999999998
Q ss_pred HHh
Q 025648 94 SDV 96 (250)
Q Consensus 94 ~~~ 96 (250)
.+.
T Consensus 79 ~~~ 81 (82)
T TIGR00411 79 KKR 81 (82)
T ss_pred Hhh
Confidence 875
No 62
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.57 E-value=1.7e-14 Score=118.04 Aligned_cols=83 Identities=13% Similarity=0.242 Sum_probs=68.8
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCC------
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGS------ 83 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~------ 83 (250)
+.+++|+||++||++|+.+.|.++++++.|+.+.+ ..+|+++. .++.+|+|.++||+++| +|+.+.++.|.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF-~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~ 160 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKF-CKIRASAT-GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGE 160 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEE-EEEeccch-hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCC
Confidence 35999999999999999999999999999987554 44466655 89999999999999999 88888877652
Q ss_pred -CCHHHHHHHHHH
Q 025648 84 -RTLDSLVAFYSD 95 (250)
Q Consensus 84 -~~~~~l~~fi~~ 95 (250)
.+.++|..++.+
T Consensus 161 ~f~~~~le~~L~~ 173 (175)
T cd02987 161 DFDAEDLESFLVE 173 (175)
T ss_pred CCCHHHHHHHHHh
Confidence 456777766654
No 63
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.2e-14 Score=121.95 Aligned_cols=93 Identities=20% Similarity=0.328 Sum_probs=80.0
Q ss_pred cccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCC
Q 025648 7 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRT 85 (250)
Q Consensus 7 ~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~ 85 (250)
.....+.++|+|+|+||++|++++|.|+.++.+|++-+++.+ |.++-+..+..+||...||+++| ||..+.++.| .+
T Consensus 17 s~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkV-dVd~c~~taa~~gV~amPTFiff~ng~kid~~qG-Ad 94 (288)
T KOG0908|consen 17 SAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKV-DVDECRGTAATNGVNAMPTFIFFRNGVKIDQIQG-AD 94 (288)
T ss_pred hccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEE-eHHHhhchhhhcCcccCceEEEEecCeEeeeecC-CC
Confidence 355678999999999999999999999999999998766655 56677888999999999999999 8888888876 57
Q ss_pred HHHHHHHHHHhhCCCC
Q 025648 86 LDSLVAFYSDVTGMNT 101 (250)
Q Consensus 86 ~~~l~~fi~~~~~~~~ 101 (250)
+..|.+.|.+++..+.
T Consensus 95 ~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 95 ASGLEEKVAKYASTSA 110 (288)
T ss_pred HHHHHHHHHHHhccCc
Confidence 8889999988876554
No 64
>PTZ00062 glutaredoxin; Provisional
Probab=99.56 E-value=4.8e-15 Score=123.66 Aligned_cols=115 Identities=10% Similarity=0.106 Sum_probs=85.1
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCHHHH
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLDSL 89 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~~~l 89 (250)
.+.++++|+|+||++|+.+.|.+++++++|+++.++.+ +.+ |+|.++||+++| +|+.+.++.|. ++.+|
T Consensus 17 ~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V-~~d--------~~V~~vPtfv~~~~g~~i~r~~G~-~~~~~ 86 (204)
T PTZ00062 17 TGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVV-NLA--------DANNEYGVFEFYQNSQLINSLEGC-NTSTL 86 (204)
T ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEE-ccc--------cCcccceEEEEEECCEEEeeeeCC-CHHHH
Confidence 47899999999999999999999999999998766666 432 999999999999 89999999875 58999
Q ss_pred HHHHHHhhCCCCCCCCCCCccccCCCCCcccccCCCC--CCCCCcCCCChhhh
Q 025648 90 VAFYSDVTGMNTASLDKISPDKVGKASNHEKHNNTEE--ESCPFSWARSPENL 140 (250)
Q Consensus 90 ~~fi~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~pw~~~ck~~ 140 (250)
..++.++.+........+-+++++...... .|.. ..+ |||+.|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~li~~~~Vv---vf~Kg~~~~--p~C~~C~~~ 134 (204)
T PTZ00062 87 VSFIRGWAQKGSSEDTVEKIERLIRNHKIL---LFMKGSKTF--PFCRFSNAV 134 (204)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCEE---EEEccCCCC--CCChhHHHH
Confidence 999999887654321111122333332211 1112 245 899999876
No 65
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.54 E-value=6.6e-14 Score=108.02 Aligned_cols=85 Identities=19% Similarity=0.282 Sum_probs=65.8
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCC-----------hhHHHhhC----CCccCeEEEE
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR-----------PSILSKYG----VHGFPTLFLL 72 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~-----------~~l~~~~~----I~~~PTi~l~ 72 (250)
.++++.++|+|+++|||+|+.+.|.++++++..+. .+..+|.+.+ .++.++|+ |.++||+++|
T Consensus 20 i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~--~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~ 97 (122)
T TIGR01295 20 LDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKA--PIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHI 97 (122)
T ss_pred HHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCC--cEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEE
Confidence 45678899999999999999999999999998432 2333333322 25566665 5569999999
Q ss_pred -eCceeEEEeC-CCCHHHHHHHHH
Q 025648 73 -NSSMRVRYHG-SRTLDSLVAFYS 94 (250)
Q Consensus 73 -~g~~~~~~~G-~~~~~~l~~fi~ 94 (250)
+|+.+.+..| ..+.++|.+|+.
T Consensus 98 k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 98 TDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred eCCeEEEEEeCCCCCHHHHHHHhh
Confidence 9999999999 557999999874
No 66
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.52 E-value=5.5e-14 Score=104.42 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=75.0
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCC--ccCeEEEE-e--CceeEEEeCCCC
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVH--GFPTLFLL-N--SSMRVRYHGSRT 85 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~--~~PTi~l~-~--g~~~~~~~G~~~ 85 (250)
++++++.|+++||++|+.+.|.+++++++|++...+..+|+++++.+++.|||. ++||++++ + |+......|..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 689999999999999999999999999999988888888999999999999999 99999999 4 334333334569
Q ss_pred HHHHHHHHHHh
Q 025648 86 LDSLVAFYSDV 96 (250)
Q Consensus 86 ~~~l~~fi~~~ 96 (250)
.++|.+|+.+.
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 67
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.47 E-value=3.2e-13 Score=112.04 Aligned_cols=81 Identities=20% Similarity=0.368 Sum_probs=66.8
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeC-------
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHG------- 82 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G------- 82 (250)
+.+|+|+||++||++|+.+.|.|+++++.|+.+.++.+ +.+. ...+|+|.++||+++| +|+.+.++.|
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI-~ad~---~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~ 177 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKI-ISTQ---CIPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGM 177 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEE-EhHH---hHhhCCCCCCCEEEEEECCEEEEEEeCchhhCCC
Confidence 46899999999999999999999999999987655544 4432 3689999999999999 8998888887
Q ss_pred CCCHHHHHHHHHH
Q 025648 83 SRTLDSLVAFYSD 95 (250)
Q Consensus 83 ~~~~~~l~~fi~~ 95 (250)
..+.++|..++.+
T Consensus 178 ~~~~~~lE~~L~~ 190 (192)
T cd02988 178 NTTMEDLEWLLVQ 190 (192)
T ss_pred CCCHHHHHHHHHh
Confidence 3466777776654
No 68
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.46 E-value=5e-13 Score=125.29 Aligned_cols=90 Identities=12% Similarity=0.210 Sum_probs=75.2
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcC--CCCEEEE---------------------------EcCCCChhHH
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAI---------------------------EESAIRPSIL 58 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~--~~~~v~~---------------------------~d~~~~~~l~ 58 (250)
++.+++++|+|||+||++|++++|.++++++.++ ++.++.+ +..+.+..+.
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 4478999999999999999999999999999886 3433333 1234556799
Q ss_pred HhhCCCccCeEEEE--eCceeEEEeCCCCHHHHHHHHHHhh
Q 025648 59 SKYGVHGFPTLFLL--NSSMRVRYHGSRTLDSLVAFYSDVT 97 (250)
Q Consensus 59 ~~~~I~~~PTi~l~--~g~~~~~~~G~~~~~~l~~fi~~~~ 97 (250)
+.|+|.++||++++ +|+.+.++.|..+.++|.++|+...
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~ 173 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPN 173 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhh
Confidence 99999999999888 7888999999999999999999543
No 69
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.46 E-value=2.7e-13 Score=125.82 Aligned_cols=92 Identities=26% Similarity=0.499 Sum_probs=77.8
Q ss_pred cccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC---CCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCce--eEEE
Q 025648 7 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSM--RVRY 80 (250)
Q Consensus 7 ~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~---~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~--~~~~ 80 (250)
..+.+++++|+|||+||++|+.+.|.++++++.+.+ ...++..|++.+. +.. ++|+++||+++| +|+. +..|
T Consensus 360 v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~~~~~~~ 437 (462)
T TIGR01130 360 VLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAGKKSEPVPY 437 (462)
T ss_pred hccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCCCCcCceEe
Confidence 456789999999999999999999999999999987 4567777887654 444 999999999999 5543 4789
Q ss_pred eCCCCHHHHHHHHHHhhCCC
Q 025648 81 HGSRTLDSLVAFYSDVTGMN 100 (250)
Q Consensus 81 ~G~~~~~~l~~fi~~~~~~~ 100 (250)
.|.++.++|.+||.+.....
T Consensus 438 ~g~~~~~~l~~~l~~~~~~~ 457 (462)
T TIGR01130 438 DGDRTLEDFSKFIAKHATFP 457 (462)
T ss_pred cCcCCHHHHHHHHHhcCCCC
Confidence 99999999999999987544
No 70
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.44 E-value=1.2e-13 Score=105.77 Aligned_cols=91 Identities=15% Similarity=0.323 Sum_probs=64.8
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCCh-hHHHhhCCCc--cCeEEEE--eCceeE---E
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP-SILSKYGVHG--FPTLFLL--NSSMRV---R 79 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~-~l~~~~~I~~--~PTi~l~--~g~~~~---~ 79 (250)
..++++++|+|||+||++|+.+.|.+.+..+.......+..++.+..+ .+.++|++.+ +||+++| +|+.+. .
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence 567889999999999999999999999987654322222222333332 4567899987 9999999 677655 4
Q ss_pred EeCCCCHHHHHHHHHHhhC
Q 025648 80 YHGSRTLDSLVAFYSDVTG 98 (250)
Q Consensus 80 ~~G~~~~~~l~~fi~~~~~ 98 (250)
..|..+.+.+...+...++
T Consensus 96 ~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 96 KKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCCccccccCCCHHHHHh
Confidence 5566677766666666554
No 71
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.43 E-value=4.3e-13 Score=101.17 Aligned_cols=86 Identities=19% Similarity=0.405 Sum_probs=60.7
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHH---HHHcCCCCEEEEEcCCC--------------------ChhHHHhhCCC
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVL---SSLYSSIPHFAIEESAI--------------------RPSILSKYGVH 64 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~l---a~~~~~~~~v~~~d~~~--------------------~~~l~~~~~I~ 64 (250)
..++++++|.|++|||++|+++.+.+.+. ...+.....+...+.+. +.++.++|||+
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 45789999999999999999999998864 44443222222222221 24689999999
Q ss_pred ccCeEEEE--eCceeEEEeCCCCHHHHHHHH
Q 025648 65 GFPTLFLL--NSSMRVRYHGSRTLDSLVAFY 93 (250)
Q Consensus 65 ~~PTi~l~--~g~~~~~~~G~~~~~~l~~fi 93 (250)
++||++++ +|+.+.++.|..+.++|.+++
T Consensus 82 gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred ccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999999 588888999999999998875
No 72
>PHA02125 thioredoxin-like protein
Probab=99.41 E-value=1.9e-12 Score=91.29 Aligned_cols=70 Identities=23% Similarity=0.404 Sum_probs=55.8
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCC-CCHHHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGS-RTLDSLVAF 92 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~-~~~~~l~~f 92 (250)
+++||++||++|+.+.|.++++.- . +..+|.++.++++++|+|.++||++ +|+.+.++.|. .+..+|++-
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~-----~-~~~vd~~~~~~l~~~~~v~~~PT~~--~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEY-----T-YVDVDTDEGVELTAKHHIRSLPTLV--NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhh-----e-EEeeeCCCCHHHHHHcCCceeCeEE--CCEEEEEEeCCCCcHHHHHHH
Confidence 789999999999999999987642 2 3334667789999999999999987 67777888884 555666554
No 73
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.41 E-value=1.2e-12 Score=100.21 Aligned_cols=84 Identities=19% Similarity=0.262 Sum_probs=61.7
Q ss_pred cCCCeEEEEEEc-------CCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCC-------ChhHHHhhCCC-ccCeEEEE-
Q 025648 9 NSHEYVAVLFYA-------SWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI-------RPSILSKYGVH-GFPTLFLL- 72 (250)
Q Consensus 9 ~~~~~vlV~Fya-------~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~-------~~~l~~~~~I~-~~PTi~l~- 72 (250)
..+++++|+||| +||++|+.+.|.++++++.+++...+..+|.+. +.++..+|+|. ++||+++|
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~ 98 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWK 98 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEc
Confidence 357899999999 999999999999999999998533344445543 46899999999 99999999
Q ss_pred eCceeEEEeCCCCHHHHHHHH
Q 025648 73 NSSMRVRYHGSRTLDSLVAFY 93 (250)
Q Consensus 73 ~g~~~~~~~G~~~~~~l~~fi 93 (250)
+|+.+... .=.+.+.+..|+
T Consensus 99 ~~~~l~~~-~c~~~~~~~~~~ 118 (119)
T cd02952 99 TPQRLVED-ECLQADLVEMFF 118 (119)
T ss_pred CCceecch-hhcCHHHHHHhh
Confidence 44433221 113555555443
No 74
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.40 E-value=3.6e-12 Score=102.04 Aligned_cols=86 Identities=22% Similarity=0.509 Sum_probs=64.1
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEE--EEcCC---------CChhHH-Hhh---CCCccCeEEEE--
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFA--IEESA---------IRPSIL-SKY---GVHGFPTLFLL-- 72 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~--~~d~~---------~~~~l~-~~~---~I~~~PTi~l~-- 72 (250)
.++..+|+|||+||++|++..|.+++++++++ ..+++ +++.. ...... ..| +|.++||++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 34567999999999999999999999999984 33333 32211 012333 345 89999999999
Q ss_pred eCce-eEEEeCCCCHHHHHHHHHHh
Q 025648 73 NSSM-RVRYHGSRTLDSLVAFYSDV 96 (250)
Q Consensus 73 ~g~~-~~~~~G~~~~~~l~~fi~~~ 96 (250)
+|+. ...+.|..+.+++.+.|.+.
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHh
Confidence 5554 44788999999999888765
No 75
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.40 E-value=2.4e-12 Score=91.02 Aligned_cols=73 Identities=10% Similarity=0.136 Sum_probs=57.7
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCC-CCHHHHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGS-RTLDSLVAFY 93 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~-~~~~~l~~fi 93 (250)
-|.||++||++|+.+.|.+++++++++....+..+| +.+.+.+|||.++||+++ +|+.+ +.|. .+.++|.+++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i-~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV-DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE-CCEEE--EEeccCCHHHHHHHh
Confidence 388999999999999999999999997643333333 355588899999999999 88766 7775 4667877765
No 76
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.37 E-value=3.3e-12 Score=104.29 Aligned_cols=88 Identities=22% Similarity=0.304 Sum_probs=71.0
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEE----------------------cCCCChhHHHhhCCCcc
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE----------------------ESAIRPSILSKYGVHGF 66 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~----------------------d~~~~~~l~~~~~I~~~ 66 (250)
..+++++|+||++||++|+++.|.++++.+. ++..+++. ..|....+.++|++.++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 3578999999999999999999999999874 23333332 12334567889999999
Q ss_pred CeEEEE--eCceeEEEeCCCCHHHHHHHHHHhhC
Q 025648 67 PTLFLL--NSSMRVRYHGSRTLDSLVAFYSDVTG 98 (250)
Q Consensus 67 PTi~l~--~g~~~~~~~G~~~~~~l~~fi~~~~~ 98 (250)
|+.+++ +|+.+.++.|..+.+++.+++.++++
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 988887 78888899999999999999998764
No 77
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.36 E-value=4.7e-12 Score=97.75 Aligned_cols=79 Identities=23% Similarity=0.368 Sum_probs=64.1
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEE----------------------cCCCChhHHHhhCCCccC
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE----------------------ESAIRPSILSKYGVHGFP 67 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~----------------------d~~~~~~l~~~~~I~~~P 67 (250)
.+++++|+||++||++|+.+.|.++++.+.+. +.++++. .++.+..++..|+|.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 47899999999999999999999999998873 3333332 234556789999999999
Q ss_pred eEEEE--eCceeEEEeCCCCHHHH
Q 025648 68 TLFLL--NSSMRVRYHGSRTLDSL 89 (250)
Q Consensus 68 Ti~l~--~g~~~~~~~G~~~~~~l 89 (250)
+.+++ +|+.+.++.|..+.+.|
T Consensus 103 ~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 103 ETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred eEEEECCCceEEEEEeccCChHhc
Confidence 87777 78888999999887754
No 78
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.36 E-value=3.3e-12 Score=107.86 Aligned_cols=81 Identities=15% Similarity=0.260 Sum_probs=68.0
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCHHHH
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLDSL 89 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~~~l 89 (250)
+...++.||++||++|+.+.|.+++++..++.+. +..+|.+..++++.+|+|.++||++++ ++. ++.|..+.++|
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~-~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~---~~~G~~~~~~l 208 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALANDKIL-GEMIEANENPDLAEKYGVMSVPKIVINKGVE---EFVGAYPEEQF 208 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceE-EEEEeCCCCHHHHHHhCCccCCEEEEecCCE---EEECCCCHHHH
Confidence 3445556999999999999999999999875544 445688899999999999999999998 443 28999999999
Q ss_pred HHHHHH
Q 025648 90 VAFYSD 95 (250)
Q Consensus 90 ~~fi~~ 95 (250)
.+++.+
T Consensus 209 ~~~l~~ 214 (215)
T TIGR02187 209 LEYILS 214 (215)
T ss_pred HHHHHh
Confidence 999875
No 79
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.35 E-value=5.9e-12 Score=103.93 Aligned_cols=87 Identities=22% Similarity=0.269 Sum_probs=69.6
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcC----------------------CCChhHHHhhCCCccC
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES----------------------AIRPSILSKYGVHGFP 67 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~----------------------~~~~~l~~~~~I~~~P 67 (250)
.+++++|+|||+||++|++..|.++++.+. ++.++.+... |....+...|+|.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 688999999999999999999999999763 4444554311 1122456689999999
Q ss_pred eEEEE--eCceeEEEeCCCCHHHHHHHHHHhhC
Q 025648 68 TLFLL--NSSMRVRYHGSRTLDSLVAFYSDVTG 98 (250)
Q Consensus 68 Ti~l~--~g~~~~~~~G~~~~~~l~~fi~~~~~ 98 (250)
+.+++ +|+...++.|..+.+++.+.|+..+.
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred eEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 98888 78889999999999999998888763
No 80
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.35 E-value=1.2e-11 Score=108.03 Aligned_cols=88 Identities=16% Similarity=0.267 Sum_probs=70.0
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEE-cCC---------CChhHHHhhCCCccCeEEEE-e-Ccee
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE-ESA---------IRPSILSKYGVHGFPTLFLL-N-SSMR 77 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~-d~~---------~~~~l~~~~~I~~~PTi~l~-~-g~~~ 77 (250)
.+++++|+||++||++|+.+.|.++++++.|+ +.++.+. |.+ .+..++++|||.++||++++ . ++.+
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 47899999999999999999999999999996 3333332 221 13578999999999999999 3 5555
Q ss_pred E-EEeCCCCHHHHHHHHHHhhC
Q 025648 78 V-RYHGSRTLDSLVAFYSDVTG 98 (250)
Q Consensus 78 ~-~~~G~~~~~~l~~fi~~~~~ 98 (250)
. ...|..+.++|.+.|...+.
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHhc
Confidence 4 45688999999999988765
No 81
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.34 E-value=3.4e-12 Score=122.10 Aligned_cols=88 Identities=17% Similarity=0.346 Sum_probs=72.3
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHH---HHHHHHcCCCCEEEEEcCC----CChhHHHhhCCCccCeEEEE--eCce--e
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYSSIPHFAIEESA----IRPSILSKYGVHGFPTLFLL--NSSM--R 77 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~---e~la~~~~~~~~v~~~d~~----~~~~l~~~~~I~~~PTi~l~--~g~~--~ 77 (250)
.++++++|+|||+||++|+.+.|.. +++.+.+++...+.+ |.+ ++.+++++|+|.++||+++| +|++ .
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~v-Dvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~ 550 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQA-DVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPD 550 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEE-ECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCccc
Confidence 3578999999999999999999875 678888877555444 333 35689999999999999999 5666 3
Q ss_pred EEEeCCCCHHHHHHHHHHhh
Q 025648 78 VRYHGSRTLDSLVAFYSDVT 97 (250)
Q Consensus 78 ~~~~G~~~~~~l~~fi~~~~ 97 (250)
.++.|..+.+++.+++++..
T Consensus 551 ~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 551 ARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred ccccCCCCHHHHHHHHHHhc
Confidence 68899999999999998854
No 82
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.32 E-value=1.2e-11 Score=94.66 Aligned_cols=82 Identities=23% Similarity=0.391 Sum_probs=65.5
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcC--------------------CCChhHHHhhCCCccCeE
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES--------------------AIRPSILSKYGVHGFPTL 69 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~--------------------~~~~~l~~~~~I~~~PTi 69 (250)
.+++++|.||++||++|+.+.|.++++++.+. +..+..++. +.+.+++++|+|.++||+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 97 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI 97 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence 45899999999999999999999999998853 222322221 345689999999999999
Q ss_pred EEE-eCceeEEEeCCCCHHHHHHH
Q 025648 70 FLL-NSSMRVRYHGSRTLDSLVAF 92 (250)
Q Consensus 70 ~l~-~g~~~~~~~G~~~~~~l~~f 92 (250)
+++ +++...++.|..+.++|.+-
T Consensus 98 ~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 98 VIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEcCCCeEEEEeccCCHHHHHhh
Confidence 999 55577889999999998653
No 83
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.31 E-value=2.3e-11 Score=98.64 Aligned_cols=87 Identities=21% Similarity=0.393 Sum_probs=72.8
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEEc---------------------CCCChhHHHhhCCCcc
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEE---------------------SAIRPSILSKYGVHGF 66 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~d---------------------~~~~~~l~~~~~I~~~ 66 (250)
.+++++|.||++||++|+...|.+.++.+++++ +..+.+.- ++....++++|+|.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 568999999999999999999999999999875 34444421 1345688999999999
Q ss_pred CeEEEE--eCceeEEEeCCCCHHHHHHHHHHh
Q 025648 67 PTLFLL--NSSMRVRYHGSRTLDSLVAFYSDV 96 (250)
Q Consensus 67 PTi~l~--~g~~~~~~~G~~~~~~l~~fi~~~ 96 (250)
|+++++ +|+.+..+.|..+.+++.+++++.
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 999999 677888899999999999998865
No 84
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=1.2e-12 Score=121.03 Aligned_cols=95 Identities=22% Similarity=0.346 Sum_probs=73.9
Q ss_pred cccccccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC---CCEEEEEcCC--CChhHHHhhCCCccCeEEEE-eCce
Q 025648 3 LNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESA--IRPSILSKYGVHGFPTLFLL-NSSM 76 (250)
Q Consensus 3 ~~~~~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~---~~~v~~~d~~--~~~~l~~~~~I~~~PTi~l~-~g~~ 76 (250)
++.+...+.+-.+|.||++|||+|++++|.|++++++... ++.++++||. ++..+|..|+|++|||+.+| .+..
T Consensus 49 f~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~ 128 (606)
T KOG1731|consen 49 FNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQ 128 (606)
T ss_pred hHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccc
Confidence 3444455556889999999999999999999999998764 7888899986 46789999999999999999 2211
Q ss_pred ----eEEEeCCCCHHHHHHHHHHhh
Q 025648 77 ----RVRYHGSRTLDSLVAFYSDVT 97 (250)
Q Consensus 77 ----~~~~~G~~~~~~l~~fi~~~~ 97 (250)
-..+.|.....++.+.+.+.+
T Consensus 129 ~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 129 NKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred cCcCCCcccCCcchhhHHHHHHHHH
Confidence 234556666777777766654
No 85
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.26 E-value=3.3e-11 Score=93.11 Aligned_cols=88 Identities=10% Similarity=0.121 Sum_probs=61.0
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHH-H--HHHHHHcC-CCCEEEEEcCCCChhHHHh--------hCCCccCeEEEE--e
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPS-F--SVLSSLYS-SIPHFAIEESAIRPSILSK--------YGVHGFPTLFLL--N 73 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~-~--e~la~~~~-~~~~v~~~d~~~~~~l~~~--------~~I~~~PTi~l~--~ 73 (250)
..++++++|+|+|+||++|+.|.+. | .++++.+. +.+.+ .+|.++.+++.++ ||+.|+||++++ +
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~V-kvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~ 90 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPI-KVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPD 90 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEE-EEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 5678999999999999999999873 3 24555543 34444 3466667766653 589999999999 6
Q ss_pred CceeEEEeCC-----CCHHHHHHHHHHh
Q 025648 74 SSMRVRYHGS-----RTLDSLVAFYSDV 96 (250)
Q Consensus 74 g~~~~~~~G~-----~~~~~l~~fi~~~ 96 (250)
|+++....+. .+...+.+++++.
T Consensus 91 G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 91 LKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 7777655432 3344555555543
No 86
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.23 E-value=1.1e-10 Score=95.55 Aligned_cols=84 Identities=23% Similarity=0.397 Sum_probs=66.6
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEE-cCC-----------CChhHHHhhCC--CccCeEEEE--eCcee-
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE-ESA-----------IRPSILSKYGV--HGFPTLFLL--NSSMR- 77 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~-d~~-----------~~~~l~~~~~I--~~~PTi~l~--~g~~~- 77 (250)
+|.||++||++|++..|.+++++++|+ +.++++. |.+ ....+...|++ .++||.+++ +|+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 788999999999999999999999984 4444432 111 12346778995 699999999 66664
Q ss_pred EEEeCCCCHHHHHHHHHHhhCC
Q 025648 78 VRYHGSRTLDSLVAFYSDVTGM 99 (250)
Q Consensus 78 ~~~~G~~~~~~l~~fi~~~~~~ 99 (250)
..+.|..+.++|.+.|.+.+..
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHhh
Confidence 4799999999999999998865
No 87
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.21 E-value=6e-11 Score=92.08 Aligned_cols=68 Identities=25% Similarity=0.509 Sum_probs=51.2
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC----CCEEEEE-cCC----------------------CChhHHHhhC
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS----IPHFAIE-ESA----------------------IRPSILSKYG 62 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~----~~~v~~~-d~~----------------------~~~~l~~~~~ 62 (250)
.+++++|+||++||++|+++.|.++++.+++.+ +..+.+. |.+ ....++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 578999999999999999999999999888753 2233221 211 1146788999
Q ss_pred CCccCeEEEE--eCcee
Q 025648 63 VHGFPTLFLL--NSSMR 77 (250)
Q Consensus 63 I~~~PTi~l~--~g~~~ 77 (250)
|.++||++++ +|+.+
T Consensus 97 v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 97 IEGIPTLIILDADGEVV 113 (131)
T ss_pred CCCCCEEEEECCCCCEE
Confidence 9999999999 45443
No 88
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.20 E-value=7.4e-11 Score=93.60 Aligned_cols=68 Identities=15% Similarity=0.305 Sum_probs=50.5
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcC---------CCCEEEEEcC-C-----------------------CChh
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS---------SIPHFAIEES-A-----------------------IRPS 56 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~---------~~~~v~~~d~-~-----------------------~~~~ 56 (250)
.+++++|+|||+||++|++++|.++++.+.+. ++..+++... + ....
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 57899999999999999999999999876543 2334443211 0 0126
Q ss_pred HHHhhCCCccCeEEEE--eCcee
Q 025648 57 ILSKYGVHGFPTLFLL--NSSMR 77 (250)
Q Consensus 57 l~~~~~I~~~PTi~l~--~g~~~ 77 (250)
++.+|+|.++||++++ +|+.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEE
Confidence 8889999999999999 44444
No 89
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.20 E-value=4.3e-11 Score=82.06 Aligned_cols=60 Identities=20% Similarity=0.430 Sum_probs=50.1
Q ss_pred EEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCc
Q 025648 14 VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSS 75 (250)
Q Consensus 14 vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~ 75 (250)
-++.|+++||++|+++.+.++++++.++++. +...|.+++++++++|||.++||+++ +|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~-~~~id~~~~~~l~~~~~i~~vPti~i-~~~ 61 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNIS-AEMIDAAEFPDLADEYGVMSVPAIVI-NGK 61 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceE-EEEEEcccCHhHHHHcCCcccCEEEE-CCE
Confidence 3688999999999999999999988876544 44456777889999999999999865 654
No 90
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.20 E-value=8.2e-11 Score=119.64 Aligned_cols=89 Identities=15% Similarity=0.263 Sum_probs=74.8
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEE----c----------------------CCCChhHHHhh
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE----E----------------------SAIRPSILSKY 61 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~----d----------------------~~~~~~l~~~~ 61 (250)
.+++++|+|||+||++|+...|.++++.++|++ +.++++. | ++....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 579999999999999999999999999999976 3444441 1 12345678899
Q ss_pred CCCccCeEEEE--eCceeEEEeCCCCHHHHHHHHHHhhC
Q 025648 62 GVHGFPTLFLL--NSSMRVRYHGSRTLDSLVAFYSDVTG 98 (250)
Q Consensus 62 ~I~~~PTi~l~--~g~~~~~~~G~~~~~~l~~fi~~~~~ 98 (250)
+|.++||++++ +|+.+.++.|....+.|.++|.+.+.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999999999 78888999999999999999988753
No 91
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.20 E-value=7.5e-11 Score=91.87 Aligned_cols=62 Identities=26% Similarity=0.486 Sum_probs=48.5
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC----CCEEEEEcCCCC-------------------------hhHHHh
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS----IPHFAIEESAIR-------------------------PSILSK 60 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~----~~~v~~~d~~~~-------------------------~~l~~~ 60 (250)
.+++++|.||++||++|+.+.|.++++++.+++ +..+.+ +.+.. ..+.+.
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~V-s~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFV-SRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEE-ecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 579999999999999999999999999988764 223322 22211 256678
Q ss_pred hCCCccCeEEEE
Q 025648 61 YGVHGFPTLFLL 72 (250)
Q Consensus 61 ~~I~~~PTi~l~ 72 (250)
|+|.++||++++
T Consensus 95 ~~v~~iPt~~li 106 (132)
T cd02964 95 FKVEGIPTLVVL 106 (132)
T ss_pred cCCCCCCEEEEE
Confidence 999999999999
No 92
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.19 E-value=1.2e-10 Score=85.22 Aligned_cols=61 Identities=33% Similarity=0.641 Sum_probs=48.1
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcC---CCCEEEEEcCCCC-------------------------hhHHHhhC
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYS---SIPHFAIEESAIR-------------------------PSILSKYG 62 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~---~~~~v~~~d~~~~-------------------------~~l~~~~~ 62 (250)
+++++|+|||+||++|++..|.+.++.+.|+ ++..+.+ ..++. ..+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~V-s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFV-SLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEE-E-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEE-EeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 6899999999999999999999999999999 3444444 22221 36889999
Q ss_pred CCccCeEEEE
Q 025648 63 VHGFPTLFLL 72 (250)
Q Consensus 63 I~~~PTi~l~ 72 (250)
|.++|+++++
T Consensus 80 i~~iP~~~ll 89 (95)
T PF13905_consen 80 INGIPTLVLL 89 (95)
T ss_dssp -TSSSEEEEE
T ss_pred CCcCCEEEEE
Confidence 9999999999
No 93
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.18 E-value=1.6e-10 Score=85.85 Aligned_cols=71 Identities=32% Similarity=0.622 Sum_probs=58.7
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcC--CCCEEEEEcCCCC-----------------------hhHHHhhCCCc
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEESAIR-----------------------PSILSKYGVHG 65 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~--~~~~v~~~d~~~~-----------------------~~l~~~~~I~~ 65 (250)
+++++|.||++||++|++..+.+.++.+.+. ++..+.+ +.+.. ..+.+.|++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGV-NVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEE-ECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 7899999999999999999999999999995 4433333 44443 67899999999
Q ss_pred cCeEEEE--eCceeEEEeC
Q 025648 66 FPTLFLL--NSSMRVRYHG 82 (250)
Q Consensus 66 ~PTi~l~--~g~~~~~~~G 82 (250)
+|+++++ +|+.+.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9999999 6777777765
No 94
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.17 E-value=1.1e-10 Score=88.16 Aligned_cols=63 Identities=14% Similarity=0.289 Sum_probs=44.8
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC-CCEEEEEcCC--CC-----------------hhHHHhhCCCccCeE
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESA--IR-----------------PSILSKYGVHGFPTL 69 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~-~~~v~~~d~~--~~-----------------~~l~~~~~I~~~PTi 69 (250)
.+++++|.||++||++|+++.|.++++++.+.+ ...+.+.+.+ +. .++.++|++.++|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 478999999999999999999999999988754 3334332211 12 244556666666776
Q ss_pred EEE
Q 025648 70 FLL 72 (250)
Q Consensus 70 ~l~ 72 (250)
+++
T Consensus 100 ~vi 102 (114)
T cd02967 100 VLL 102 (114)
T ss_pred EEE
Confidence 666
No 95
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.16 E-value=2.2e-10 Score=83.40 Aligned_cols=77 Identities=16% Similarity=0.295 Sum_probs=62.7
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHH
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSL 89 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l 89 (250)
.+..-+..|+++||++|....+.++++++.++++ .+...|.++.++++.+|||.++||+++ +|+... .|..+.+++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i-~~~~vd~~~~~e~a~~~~V~~vPt~vi-dG~~~~--~G~~~~~e~ 86 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNI-EHEMIDGALFQDEVEERGIMSVPAIFL-NGELFG--FGRMTLEEI 86 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCc-eEEEEEhHhCHHHHHHcCCccCCEEEE-CCEEEE--eCCCCHHHH
Confidence 3456788899999999999999999999998765 455557778899999999999999965 887554 576676665
Q ss_pred H
Q 025648 90 V 90 (250)
Q Consensus 90 ~ 90 (250)
+
T Consensus 87 ~ 87 (89)
T cd03026 87 L 87 (89)
T ss_pred h
Confidence 4
No 96
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.11 E-value=4.2e-10 Score=86.90 Aligned_cols=74 Identities=18% Similarity=0.309 Sum_probs=58.9
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEEc--------------------------CCCChhHHHhh
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEE--------------------------SAIRPSILSKY 61 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~d--------------------------~~~~~~l~~~~ 61 (250)
.+++++|+||++||++|++..|.++++.++|++ +..+++.. .|....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 578999999999999999999999999999975 44444421 01223677889
Q ss_pred CCCccCeEEEE--eCceeEEEeCC
Q 025648 62 GVHGFPTLFLL--NSSMRVRYHGS 83 (250)
Q Consensus 62 ~I~~~PTi~l~--~g~~~~~~~G~ 83 (250)
++.++|+++++ +|+.+..+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999999 67788877774
No 97
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.06 E-value=1.4e-09 Score=82.56 Aligned_cols=90 Identities=12% Similarity=0.206 Sum_probs=69.4
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHH-H--HHHHHHcCC-CCEEEEEc-CCCChhHHHhhCCCccCeEEEE---eCceeEE
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPS-F--SVLSSLYSS-IPHFAIEE-SAIRPSILSKYGVHGFPTLFLL---NSSMRVR 79 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~-~--e~la~~~~~-~~~v~~~d-~~~~~~l~~~~~I~~~PTi~l~---~g~~~~~ 79 (250)
.+++++++|+|+++||++|+.+... | +++.+.+.. .+.+..+- ..+...++..|++.++|+++++ +|+.+.+
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 5568999999999999999999753 3 334454543 33333321 2256689999999999999999 4778899
Q ss_pred EeCCCCHHHHHHHHHHhh
Q 025648 80 YHGSRTLDSLVAFYSDVT 97 (250)
Q Consensus 80 ~~G~~~~~~l~~fi~~~~ 97 (250)
..|..+.+++...+.+..
T Consensus 94 ~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 94 WSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EcCCCCHHHHHHHHHHHH
Confidence 999999999999988764
No 98
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.01 E-value=2.1e-09 Score=84.76 Aligned_cols=83 Identities=29% Similarity=0.463 Sum_probs=63.9
Q ss_pred cCCCeEEEEEEcC-CChhHHhhhHHHHHHHHHcCC--CCEEEEEc--------------------CCCChhHHHhhCCC-
Q 025648 9 NSHEYVAVLFYAS-WCPFSRNFRPSFSVLSSLYSS--IPHFAIEE--------------------SAIRPSILSKYGVH- 64 (250)
Q Consensus 9 ~~~~~vlV~Fya~-wC~~C~~~~p~~e~la~~~~~--~~~v~~~d--------------------~~~~~~l~~~~~I~- 64 (250)
-.+++++|.||++ |||+|+...|.++++.+.|++ +..+.+.- .|....+.++|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 4688999999999 999999999999999988654 44444421 11335789999998
Q ss_pred --------ccCeEEEE--eCceeEEEeCCCC--HHHHHH
Q 025648 65 --------GFPTLFLL--NSSMRVRYHGSRT--LDSLVA 91 (250)
Q Consensus 65 --------~~PTi~l~--~g~~~~~~~G~~~--~~~l~~ 91 (250)
++|+++++ +|+.+..+.|..+ ..++.+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~ 144 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEA 144 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHH
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhh
Confidence 99999999 7888888888765 444443
No 99
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.01 E-value=1.2e-09 Score=91.25 Aligned_cols=90 Identities=12% Similarity=0.182 Sum_probs=67.8
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEEcC-----------CCChhHHHhhCC-------------
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEES-----------AIRPSILSKYGV------------- 63 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~d~-----------~~~~~l~~~~~I------------- 63 (250)
.+++++|.|||+||++|++.+|.++++.+.|.+ +.++++. + ++..+.++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~-~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~ 116 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFP-TSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGE 116 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEec-chhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCC
Confidence 478999999999999999999999999999974 5555652 2 112344445443
Q ss_pred -----------------------CccC---eEEEE--eCceeEEEeCCCCHHHHHHHHHHhhCCC
Q 025648 64 -----------------------HGFP---TLFLL--NSSMRVRYHGSRTLDSLVAFYSDVTGMN 100 (250)
Q Consensus 64 -----------------------~~~P---Ti~l~--~g~~~~~~~G~~~~~~l~~fi~~~~~~~ 100 (250)
.++| +.+++ +|+.+.++.|..+.++|.+.|++.++.+
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~ 181 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVK 181 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 1122 56677 7888899999999999999999887654
No 100
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.98 E-value=4.9e-09 Score=81.44 Aligned_cols=87 Identities=16% Similarity=0.243 Sum_probs=75.6
Q ss_pred EEEEEcC---CChhHHhhhHHHHHHHHHcCC-CCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCHHHH
Q 025648 15 AVLFYAS---WCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLDSL 89 (250)
Q Consensus 15 lV~Fya~---wC~~C~~~~p~~e~la~~~~~-~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~~~l 89 (250)
.|.|.+. -++.+-...-++++++++|++ ...++.+|.++++.++.+|||.++||+++| +|+.+.+..|.++.+++
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l 116 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAEL 116 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHH
Confidence 4445443 367788888999999999985 478888899999999999999999999999 99999999999999999
Q ss_pred HHHHHHhhCCCC
Q 025648 90 VAFYSDVTGMNT 101 (250)
Q Consensus 90 ~~fi~~~~~~~~ 101 (250)
.++|.+++....
T Consensus 117 ~~~I~~~L~~~~ 128 (132)
T PRK11509 117 INLMRGLVEPQQ 128 (132)
T ss_pred HHHHHHHhcCcC
Confidence 999999987653
No 101
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.97 E-value=3.2e-09 Score=90.67 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=66.9
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEEcCC--------C---ChhHH-HhhC-------------
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESA--------I---RPSIL-SKYG------------- 62 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~d~~--------~---~~~l~-~~~~------------- 62 (250)
.+++++|.||++||++|+...|.++++.++|++ +.++++. ++ . ..+.+ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~-~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFP-CNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEe-cccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 468999999999999999999999999999974 4555553 11 1 11221 2222
Q ss_pred ---------------------CCccCeEEEE--eCceeEEEeCCCCHHHHHHHHHHhhC
Q 025648 63 ---------------------VHGFPTLFLL--NSSMRVRYHGSRTLDSLVAFYSDVTG 98 (250)
Q Consensus 63 ---------------------I~~~PTi~l~--~g~~~~~~~G~~~~~~l~~fi~~~~~ 98 (250)
|...||.+++ +|+.+.+|.|..+.++|.+.|++++.
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 2335899999 89999999999999999999988763
No 102
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.94 E-value=4.2e-11 Score=91.15 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=67.0
Q ss_pred CCCCCCCccccCCCCCcccccCCCCCCCCCcCCC---ChhhhcCchHHHHHHH-----------------HHHHHHHHHH
Q 025648 102 ASLDKISPDKVGKASNHEKHNNTEEESCPFSWAR---SPENLLQQETYLALAT-----------------AFVLLRLVYI 161 (250)
Q Consensus 102 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~---~ck~~~~~~~~~~lA~-----------------~f~~~~~~i~ 161 (250)
..|++.+|++++.... .+++ .++++.|||+ ||+++ +|.|...|. .-+|.+|+|.
T Consensus 4 v~L~~~nF~~~v~~~~-~vlV---~F~A~~Pwc~k~~~~~~L--A~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 4 VDLDTVTFYKVIPKFK-YSLV---KFDTAYPYGEKHEAFTRL--AESSASATDDLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred eECChhhHHHHHhcCC-cEEE---EEeCCCCCCCChHHHHHH--HHHHHhhcCceEEEEEecccccchhhHHHHHHhCCC
Confidence 4678899999886654 2444 3466669999 99999 999976542 3367999999
Q ss_pred --hhhhHHHHhhhHHHHHHHhhcccccccchHHHHh--hHH-HHHHHhccc
Q 025648 162 --FLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTYLN--RAI-QLFKTLNEP 207 (250)
Q Consensus 162 --~fPti~~f~~~~~~~~~~~~~~~~~~~~~~~y~g--r~~-~~~~~l~~~ 207 (250)
+||||++|.+|. .+.|..|.| |.. .|++|++.+
T Consensus 78 ~~gyPTl~lF~~g~-------------~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGD-------------FENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCC-------------cCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999873 046788997 665 899999843
No 103
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.94 E-value=6.1e-09 Score=85.61 Aligned_cols=84 Identities=5% Similarity=0.076 Sum_probs=63.5
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHH-cCC-----CCEEEEEc--------------------------CCCChhH
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSL-YSS-----IPHFAIEE--------------------------SAIRPSI 57 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~-~~~-----~~~v~~~d--------------------------~~~~~~l 57 (250)
.+++++|.|||+||++|+...|.++++++. ++- ...|..+| .|....+
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 389999999999999999999999999764 321 12222221 1123356
Q ss_pred HHhhCCCccCeE-EEE--eCceeEEEeCCCCHHHHHHHH
Q 025648 58 LSKYGVHGFPTL-FLL--NSSMRVRYHGSRTLDSLVAFY 93 (250)
Q Consensus 58 ~~~~~I~~~PTi-~l~--~g~~~~~~~G~~~~~~l~~fi 93 (250)
..+|++.++|+. +++ +|+.+.++.|..+.+++.+.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 789999999888 677 788999999999988887743
No 104
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.93 E-value=1.1e-08 Score=84.69 Aligned_cols=87 Identities=17% Similarity=0.257 Sum_probs=60.8
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcC-------------------CCChhHHHhhCCCccCeE
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES-------------------AIRPSILSKYGVHGFPTL 69 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~-------------------~~~~~l~~~~~I~~~PTi 69 (250)
..+++++|+||++||++|++..|.++++.+.+. ...+.+.+. ....++.+.|+|.++|+.
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~-~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE-TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 367899999999999999999999999987753 333333211 013477889999999999
Q ss_pred EEEeCceeEEEeCC-CCHHHHHHHHHHh
Q 025648 70 FLLNSSMRVRYHGS-RTLDSLVAFYSDV 96 (250)
Q Consensus 70 ~l~~g~~~~~~~G~-~~~~~l~~fi~~~ 96 (250)
++++.+-..++.|. ...+.+.+.++..
T Consensus 151 ~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 99832223334454 3556777776654
No 105
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.89 E-value=1.9e-09 Score=100.99 Aligned_cols=90 Identities=18% Similarity=0.319 Sum_probs=72.0
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHH---HHHHHcCCCCEEEEE---cCCCChhHHHhhCCCccCeEEEE--eCceeEE
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFS---VLSSLYSSIPHFAIE---ESAIRPSILSKYGVHGFPTLFLL--NSSMRVR 79 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e---~la~~~~~~~~v~~~---d~~~~~~l~~~~~I~~~PTi~l~--~g~~~~~ 79 (250)
.+.+++|+|+|||+||-.||.+++..- +...+.++++.+..| +..++.++-++||+-++|++++| +|++...
T Consensus 471 ~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~ 550 (569)
T COG4232 471 EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEI 550 (569)
T ss_pred hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcC
Confidence 445579999999999999999988643 445566676666665 23345678899999999999999 6777777
Q ss_pred EeCCCCHHHHHHHHHHhh
Q 025648 80 YHGSRTLDSLVAFYSDVT 97 (250)
Q Consensus 80 ~~G~~~~~~l~~fi~~~~ 97 (250)
..|..+.+.+.+++++..
T Consensus 551 l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 551 LTGFLTADAFLEHLERAA 568 (569)
T ss_pred CcceecHHHHHHHHHHhc
Confidence 899999999999998753
No 106
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.86 E-value=1.5e-08 Score=74.53 Aligned_cols=83 Identities=25% Similarity=0.433 Sum_probs=63.6
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCC-CChhHHHhhC--CCccCeEEEE-eCceeEEEeC--CC
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA-IRPSILSKYG--VHGFPTLFLL-NSSMRVRYHG--SR 84 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~-~~~~l~~~~~--I~~~PTi~l~-~g~~~~~~~G--~~ 84 (250)
+++++|.||++||++|+.+.|.+.++++.+.....+...+.. ..+.+...|+ +..+|+++++ ++.....+.+ ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 779999999999999999999999999999863333333554 6789999999 9999999888 6666555555 44
Q ss_pred CHHHHHHHH
Q 025648 85 TLDSLVAFY 93 (250)
Q Consensus 85 ~~~~l~~fi 93 (250)
....+..-.
T Consensus 112 ~~~~~~~~~ 120 (127)
T COG0526 112 PKEALIDAL 120 (127)
T ss_pred CHHHHHHHh
Confidence 545544433
No 107
>smart00594 UAS UAS domain.
Probab=98.85 E-value=1.2e-08 Score=78.66 Aligned_cols=86 Identities=13% Similarity=0.243 Sum_probs=63.3
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHH---HHHHHHcCC-CCEEEEE-cCCCChhHHHhhCCCccCeEEEE--eC-----c
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYSS-IPHFAIE-ESAIRPSILSKYGVHGFPTLFLL--NS-----S 75 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~---e~la~~~~~-~~~v~~~-d~~~~~~l~~~~~I~~~PTi~l~--~g-----~ 75 (250)
..++|+++|+|+++||++|+.+.... .++.+.+.. .+.+..+ ...+..+++.+|+++++|+++++ ++ .
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~ 103 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIE 103 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEE
Confidence 45678999999999999999996542 234444433 3333332 23356789999999999999999 44 2
Q ss_pred eeEEEeCCCCHHHHHHHH
Q 025648 76 MRVRYHGSRTLDSLVAFY 93 (250)
Q Consensus 76 ~~~~~~G~~~~~~l~~fi 93 (250)
.+.+..|..+.++|+.++
T Consensus 104 ~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 104 WVGVVEGEISPEELMTFL 121 (122)
T ss_pred EeccccCCCCHHHHHHhh
Confidence 466888999999998876
No 108
>PLN02412 probable glutathione peroxidase
Probab=98.85 E-value=9.3e-09 Score=83.50 Aligned_cols=88 Identities=16% Similarity=0.214 Sum_probs=66.6
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEEcC--------CCChh----HHHh---------------
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEES--------AIRPS----ILSK--------------- 60 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~d~--------~~~~~----l~~~--------------- 60 (250)
.+++++|.||++||++|++..|.++++.+.|++ +.++++. + +...+ ++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFP-CNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEec-ccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 468999999999999999999999999999975 4455552 1 11111 1122
Q ss_pred ------hC-------------CCccCeEEEE--eCceeEEEeCCCCHHHHHHHHHHhhC
Q 025648 61 ------YG-------------VHGFPTLFLL--NSSMRVRYHGSRTLDSLVAFYSDVTG 98 (250)
Q Consensus 61 ------~~-------------I~~~PTi~l~--~g~~~~~~~G~~~~~~l~~fi~~~~~ 98 (250)
|+ |.+.||.+++ +|+.+.++.|..+.++|.+.|++.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 11 4446898888 88899999999999999999988764
No 109
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.84 E-value=6.7e-09 Score=80.57 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=46.8
Q ss_pred cccCCCeEEEEEEcCCChhHHhhhHHH---HHHHHHcC-CCCEEEEE--cCCCChhHHHhhCCCccCeEEEE--eCceeE
Q 025648 7 HKNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYS-SIPHFAIE--ESAIRPSILSKYGVHGFPTLFLL--NSSMRV 78 (250)
Q Consensus 7 ~~~~~~~vlV~Fya~wC~~C~~~~p~~---e~la~~~~-~~~~v~~~--d~~~~~~l~~~~~I~~~PTi~l~--~g~~~~ 78 (250)
...++++++|+|+++||++|+.|...+ .++.+... +.+.|.++ ..+.+.. ..+ .++||++++ +|+.+.
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~---~~g-~~vPtivFld~~g~vi~ 94 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS---PDG-QYVPRIMFVDPSLTVRA 94 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC---ccC-cccCeEEEECCCCCCcc
Confidence 356789999999999999999997754 22333332 23322332 1211222 234 689999999 677766
Q ss_pred EEeCC
Q 025648 79 RYHGS 83 (250)
Q Consensus 79 ~~~G~ 83 (250)
+..|.
T Consensus 95 ~i~Gy 99 (130)
T cd02960 95 DITGR 99 (130)
T ss_pred ccccc
Confidence 66664
No 110
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.83 E-value=4.8e-08 Score=79.28 Aligned_cols=93 Identities=18% Similarity=0.328 Sum_probs=68.5
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEEcCC----------------------------CChhHH
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESA----------------------------IRPSIL 58 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~d~~----------------------------~~~~l~ 58 (250)
..++++||.||++||+.|....+.+.++.++|++ +.++++.-.+ ....++
T Consensus 23 ~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 23 ADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred hCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 3678999999999999999999999999999973 4445442110 123567
Q ss_pred HhhCCCccCeEEEE--eCceeEEE---------eCCCCHHHHHHHHHHhhCCCC
Q 025648 59 SKYGVHGFPTLFLL--NSSMRVRY---------HGSRTLDSLVAFYSDVTGMNT 101 (250)
Q Consensus 59 ~~~~I~~~PTi~l~--~g~~~~~~---------~G~~~~~~l~~fi~~~~~~~~ 101 (250)
+.|+|...|+++++ +|+.+... .+..+.+++.+.|...+....
T Consensus 103 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 88999999999999 45444332 122467889999999886554
No 111
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.81 E-value=2.5e-10 Score=86.89 Aligned_cols=83 Identities=11% Similarity=0.141 Sum_probs=59.4
Q ss_pred CCCCCCCCCCccccCC--CCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH----------------HH-HHHH
Q 025648 99 MNTASLDKISPDKVGK--ASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF----------------VL-LRLV 159 (250)
Q Consensus 99 ~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f----------------~~-~~~~ 159 (250)
.++.++++++|++.+. ....-+++ .+++ |||++|+.+ .|.++++|..+ ++ .+|+
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV---~FyA--~WC~~Ck~l--~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~ 81 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLV---MYYA--PWDAQSQAA--RQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKH 81 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEE---EEEC--CCCHHHHHH--HHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcC
Confidence 3455678888887632 22222223 4477 999999999 99999999887 24 4799
Q ss_pred HHhhhhHHHHhhhHHHHHHHhhcccccccchHHHHh-h-HHHHHHH
Q 025648 160 YIFLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTYLN-R-AIQLFKT 203 (250)
Q Consensus 160 i~~fPti~~f~~~~~~~~~~~~~~~~~~~~~~~y~g-r-~~~~~~~ 203 (250)
|.+||||++|.+|. .+..|.| | ...|..|
T Consensus 82 I~~~PTl~lf~~g~---------------~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 82 FFYFPVIHLYYRSR---------------GPIEYKGPMRAPYMEKF 112 (113)
T ss_pred CcccCEEEEEECCc---------------cceEEeCCCCHHHHHhh
Confidence 99999999997655 3677877 3 3466655
No 112
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.81 E-value=1e-08 Score=81.85 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=58.3
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEE-cC---------CCChhHHH------------------
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE-ES---------AIRPSILS------------------ 59 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~-d~---------~~~~~l~~------------------ 59 (250)
.+++++|.|||+||+ |+...|.++++.+.|.+ +.++++. +. +...+.++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 478999999999999 99999999999999964 4455552 10 01122222
Q ss_pred ----hhC--CCccC-----------eEEEE--eCceeEEEeCCCCHHHHHHH
Q 025648 60 ----KYG--VHGFP-----------TLFLL--NSSMRVRYHGSRTLDSLVAF 92 (250)
Q Consensus 60 ----~~~--I~~~P-----------Ti~l~--~g~~~~~~~G~~~~~~l~~f 92 (250)
.|+ +.++| |.+++ +|+.+.++.|..+.++|.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 222 24566 67777 78889999999988877653
No 113
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.76 E-value=5.6e-08 Score=68.51 Aligned_cols=73 Identities=19% Similarity=0.349 Sum_probs=57.3
Q ss_pred EEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeC-CCCHHHHHHHHH
Q 025648 16 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHG-SRTLDSLVAFYS 94 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G-~~~~~~l~~fi~ 94 (250)
|.+++++|++|..+...++++++.++ ..+.+.+....+++ .+|||.++|++++ ||+ .++.| ..+.++|.++|+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI-ng~--~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI-NGK--VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE-TTE--EEEESS--HHHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE-CCE--EEEEecCCCHHHHHHHhC
Confidence 34478899999999999999999994 56677777555666 9999999999955 775 56888 678899998874
No 114
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.76 E-value=3.4e-08 Score=78.83 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=63.5
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEEc-------CC---CChhHHHh-----------------
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEE-------SA---IRPSILSK----------------- 60 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~d-------~~---~~~~l~~~----------------- 60 (250)
.+++++|.|||+||++|++..|.++++.+.|++ +.++++.- .+ ...+.+++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 468899999999999999999999999999874 44555420 01 11222221
Q ss_pred -------hCC---CccCe----EEEE--eCceeEEEeCCCCHHHHHHHHHHh
Q 025648 61 -------YGV---HGFPT----LFLL--NSSMRVRYHGSRTLDSLVAFYSDV 96 (250)
Q Consensus 61 -------~~I---~~~PT----i~l~--~g~~~~~~~G~~~~~~l~~fi~~~ 96 (250)
|.+ .++|+ .+++ +|+.+.+|.|..+.++|.+.|++.
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 211 24786 7777 788999999999999999888764
No 115
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.72 E-value=1.8e-08 Score=71.95 Aligned_cols=64 Identities=20% Similarity=0.431 Sum_probs=43.2
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHH---HHHHHHc-CCCCEEEEEcCCCChhHHHhhCCCccCeEEEEe
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLY-SSIPHFAIEESAIRPSILSKYGVHGFPTLFLLN 73 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~---e~la~~~-~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~ 73 (250)
..++++++|+|+++||++|+.+...+ .++.+.+ ++.+.+.++ .+...... ++..+++|++++++
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd-~~~~~~~~-~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVD-VDDEDPNA-QFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEE-TTTHHHHH-HHHHCSSSEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEE-cCCCChhH-HhCCccCCEEEEeC
Confidence 56789999999999999999998776 4455533 344555554 33333222 22227799999974
No 116
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.71 E-value=6.9e-10 Score=82.55 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=60.1
Q ss_pred CCCCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH----------------HHHHHHHHhhh
Q 025648 101 TASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF----------------VLLRLVYIFLP 164 (250)
Q Consensus 101 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f----------------~~~~~~i~~fP 164 (250)
+.+++.++|++.+......+.+ ..++ |||++|+.+ .|.|..+|..| ++.+++|.+||
T Consensus 3 v~~l~~~~f~~~i~~~~~~v~v---~f~a--~wC~~C~~~--~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P 75 (104)
T cd03004 3 VITLTPEDFPELVLNRKEPWLV---DFYA--PWCGPCQAL--LPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYP 75 (104)
T ss_pred ceEcCHHHHHHHHhcCCCeEEE---EEEC--CCCHHHHHH--HHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCccc
Confidence 3456667777765544333333 3467 899999999 99999999987 34889999999
Q ss_pred hHHHHhhhHHHHHHHhhcccccccchHHHHh-h--HHHHHHHh
Q 025648 165 TLLIFAQFTWRRLIRNLKLGSLLEHPRTYLN-R--AIQLFKTL 204 (250)
Q Consensus 165 ti~~f~~~~~~~~~~~~~~~~~~~~~~~y~g-r--~~~~~~~l 204 (250)
|+++|.+|. +....|.| + .++|.+||
T Consensus 76 t~~~~~~g~--------------~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 76 TIRLYPGNA--------------SKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEEcCCC--------------CCceEccCCCCCHHHHHhhC
Confidence 999999885 44566776 3 34665553
No 117
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.67 E-value=1.5e-07 Score=64.66 Aligned_cols=68 Identities=16% Similarity=0.371 Sum_probs=48.8
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCCh----hHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLV 90 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~----~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~ 90 (250)
+..|+++||++|+++.+.+++. ++. +...|.+.++ ++.+++++.++|++++. |+. ..| .+.++|.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-----~i~-~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~-~~~---~~g-~~~~~i~ 70 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-----GIA-FEEIDVEKDSAAREEVLKVLGQRGVPVIVIG-HKI---IVG-FDPEKLD 70 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-----CCe-EEEEeccCCHHHHHHHHHHhCCCcccEEEEC-CEE---Eee-CCHHHHH
Confidence 5689999999999999988763 332 3333444443 36678999999999874 433 555 5778888
Q ss_pred HHH
Q 025648 91 AFY 93 (250)
Q Consensus 91 ~fi 93 (250)
++|
T Consensus 71 ~~i 73 (74)
T TIGR02196 71 QLL 73 (74)
T ss_pred HHh
Confidence 876
No 118
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.66 E-value=4.7e-09 Score=87.72 Aligned_cols=85 Identities=19% Similarity=0.402 Sum_probs=76.3
Q ss_pred eEEEEEEcCCChhHHhhhHHHHHHHHHcCC-CCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHH
Q 025648 13 YVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVA 91 (250)
Q Consensus 13 ~vlV~Fya~wC~~C~~~~p~~e~la~~~~~-~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~ 91 (250)
-++++|+|||||.|+.+.|.|+.++.--.+ -+.++.+|.+.++-|.-+|-|...|||+-...++.-+|.|.|+.++++.
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGeFrrysgaRdk~dfis 120 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGEFRRYSGARDKNDFIS 120 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeeccccccccCcccchhHHH
Confidence 478999999999999999999999886666 4678888988999999999999999999887778899999999999999
Q ss_pred HHHHhh
Q 025648 92 FYSDVT 97 (250)
Q Consensus 92 fi~~~~ 97 (250)
|++..-
T Consensus 121 f~~~r~ 126 (248)
T KOG0913|consen 121 FEEHRE 126 (248)
T ss_pred HHHhhh
Confidence 998754
No 119
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.63 E-value=1.5e-07 Score=73.33 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=63.3
Q ss_pred CCeEEEEEE-cCCChhHHhhhHHHHHHHHHcCC--CCEEEEE--------------------cCCCChhHHHhhCCCcc-
Q 025648 11 HEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE--------------------ESAIRPSILSKYGVHGF- 66 (250)
Q Consensus 11 ~~~vlV~Fy-a~wC~~C~~~~p~~e~la~~~~~--~~~v~~~--------------------d~~~~~~l~~~~~I~~~- 66 (250)
+++++|.|| +.||+.|....|.+.++.+.+.+ +..+++. -++....+.+.||+...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 789999999 68999999999999999988753 4444431 11233578889999988
Q ss_pred --------CeEEEE--eCceeEEEeCCCCHHHHHHH
Q 025648 67 --------PTLFLL--NSSMRVRYHGSRTLDSLVAF 92 (250)
Q Consensus 67 --------PTi~l~--~g~~~~~~~G~~~~~~l~~f 92 (250)
|+++++ +|+.+..+.|....+++.+-
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 899999 68888999998776666553
No 120
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.59 E-value=3e-07 Score=77.64 Aligned_cols=83 Identities=24% Similarity=0.441 Sum_probs=65.2
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEE-cC---------CCChhHHHhhCCCccCeEEEE--eC-ce
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE-ES---------AIRPSILSKYGVHGFPTLFLL--NS-SM 76 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~-d~---------~~~~~l~~~~~I~~~PTi~l~--~g-~~ 76 (250)
.++.-|++||.+.|++|+.+.|++..+++.| ++..+.+. |. -.+..+++++||..+|+++++ ++ +.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 4678899999999999999999999999999 44333332 21 135789999999999999999 34 34
Q ss_pred eEEEeCCCCHHHHHHHH
Q 025648 77 RVRYHGSRTLDSLVAFY 93 (250)
Q Consensus 77 ~~~~~G~~~~~~l~~fi 93 (250)
...-.|..+.++|.+-|
T Consensus 198 ~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 198 YPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEeeecCCHHHHHHhh
Confidence 45567899999997643
No 121
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.59 E-value=2.7e-07 Score=76.02 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=62.1
Q ss_pred CCCeE-EEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEEcCC-----C--C-h---hH-HHh--------------
Q 025648 10 SHEYV-AVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESA-----I--R-P---SI-LSK-------------- 60 (250)
Q Consensus 10 ~~~~v-lV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~d~~-----~--~-~---~l-~~~-------------- 60 (250)
.++++ ++.+||+|||+|++.+|.++++.+.|++ +.++++. ++ + . . .. .++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs-~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~ 117 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFP-CNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVN 117 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEe-cccccccCCCCHHHHHHHHHHhcCCCCCCceEEecC
Confidence 45644 5667999999999999999999999874 5555553 11 0 0 0 00 111
Q ss_pred ----------------------hCCCccCe---EEEE--eCceeEEEeCCCCHHHHHHHHHHhhC
Q 025648 61 ----------------------YGVHGFPT---LFLL--NSSMRVRYHGSRTLDSLVAFYSDVTG 98 (250)
Q Consensus 61 ----------------------~~I~~~PT---i~l~--~g~~~~~~~G~~~~~~l~~fi~~~~~ 98 (250)
+++.++|+ .+++ +|..+.++.|..+.+++.+.|.+.+.
T Consensus 118 g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 118 GENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 24557895 4677 78889999999999999998887753
No 122
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.57 E-value=5.7e-07 Score=72.95 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=62.0
Q ss_pred CCCeEEEEEEcCC-ChhHHhhhHHHHHHHHHcCCCCEEEEEc---------------------CC-CChhHHHhhCCCcc
Q 025648 10 SHEYVAVLFYASW-CPFSRNFRPSFSVLSSLYSSIPHFAIEE---------------------SA-IRPSILSKYGVHGF 66 (250)
Q Consensus 10 ~~~~vlV~Fya~w-C~~C~~~~p~~e~la~~~~~~~~v~~~d---------------------~~-~~~~l~~~~~I~~~ 66 (250)
.+++++|.||+.| |++|....|.++++++.+.+..++++.. +| ....+++.||+...
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~ 122 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIA 122 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeec
Confidence 4789999999999 9999999999999999986655554410 11 22377889999887
Q ss_pred C---------eEEEE--eCceeEEEeC-----CCCHHHHHHHHH
Q 025648 67 P---------TLFLL--NSSMRVRYHG-----SRTLDSLVAFYS 94 (250)
Q Consensus 67 P---------Ti~l~--~g~~~~~~~G-----~~~~~~l~~fi~ 94 (250)
| +.+++ +|+.+..+.+ ..+.++++++++
T Consensus 123 ~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 123 EGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred ccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 7 88888 6666666643 235666666653
No 123
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.56 E-value=3.9e-09 Score=78.14 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=49.9
Q ss_pred CCCCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH----------------HHHHHHHHhhh
Q 025648 101 TASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF----------------VLLRLVYIFLP 164 (250)
Q Consensus 101 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f----------------~~~~~~i~~fP 164 (250)
+..++.++|++.+... ..+.+ .+++ |||++|+.+ .|.+..+|..+ ++.+++|.+||
T Consensus 3 ~~~l~~~~f~~~v~~~-~~~~v---~f~a--~wC~~C~~~--~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 74 (101)
T cd03003 3 IVTLDRGDFDAAVNSG-EIWFV---NFYS--PRCSHCHDL--APTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYP 74 (101)
T ss_pred eEEcCHhhHHHHhcCC-CeEEE---EEEC--CCChHHHHh--HHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccC
Confidence 3456777788776432 22222 3467 999999999 99999999987 35899999999
Q ss_pred hHHHHhhhH
Q 025648 165 TLLIFAQFT 173 (250)
Q Consensus 165 ti~~f~~~~ 173 (250)
|+++|++|.
T Consensus 75 t~~~~~~g~ 83 (101)
T cd03003 75 SLYVFPSGM 83 (101)
T ss_pred EEEEEcCCC
Confidence 999998765
No 124
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=7.3e-08 Score=79.81 Aligned_cols=74 Identities=26% Similarity=0.514 Sum_probs=65.1
Q ss_pred cccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC-CCEEEEEcCCCChhHHHhhCCC------ccCeEEEE-eCceeE
Q 025648 7 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVH------GFPTLFLL-NSSMRV 78 (250)
Q Consensus 7 ~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~-~~~v~~~d~~~~~~l~~~~~I~------~~PTi~l~-~g~~~~ 78 (250)
..+....|+|.|||.|.+.|++..|.|.+++..|.. ...++.+|....++.+++|+|. ..||+++| +|+++.
T Consensus 140 ~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~~ 219 (265)
T KOG0914|consen 140 DRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEVS 219 (265)
T ss_pred ccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhhh
Confidence 455667999999999999999999999999999975 6788888988999999999985 69999999 888766
Q ss_pred EE
Q 025648 79 RY 80 (250)
Q Consensus 79 ~~ 80 (250)
|.
T Consensus 220 Rr 221 (265)
T KOG0914|consen 220 RR 221 (265)
T ss_pred cC
Confidence 54
No 125
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.52 E-value=3.6e-07 Score=69.56 Aligned_cols=66 Identities=23% Similarity=0.605 Sum_probs=52.7
Q ss_pred CCCeEEEEEEcC-CChhHHhhhHHHHHHHHHcC--CCCEEEEEc--------------------CCCChhHHHhhCCC--
Q 025648 10 SHEYVAVLFYAS-WCPFSRNFRPSFSVLSSLYS--SIPHFAIEE--------------------SAIRPSILSKYGVH-- 64 (250)
Q Consensus 10 ~~~~vlV~Fya~-wC~~C~~~~p~~e~la~~~~--~~~~v~~~d--------------------~~~~~~l~~~~~I~-- 64 (250)
.+++++|.||+. ||++|+...+.++++.++|+ ++..+++.. +|....+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 678999999999 99999999999999999887 444555422 12345788999999
Q ss_pred ----ccCeEEEEeCc
Q 025648 65 ----GFPTLFLLNSS 75 (250)
Q Consensus 65 ----~~PTi~l~~g~ 75 (250)
.+|++++++.+
T Consensus 104 ~~~~~~p~~~lid~~ 118 (124)
T PF00578_consen 104 KDTLALPAVFLIDPD 118 (124)
T ss_dssp TTSEESEEEEEEETT
T ss_pred cCCceEeEEEEECCC
Confidence 99999999433
No 126
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.51 E-value=5.5e-07 Score=58.67 Aligned_cols=59 Identities=37% Similarity=0.796 Sum_probs=44.3
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHH---hhCCCccCeEEEEeC
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILS---KYGVHGFPTLFLLNS 74 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~---~~~I~~~PTi~l~~g 74 (250)
++.||++||++|+++.+.++++....++ ..+...+++....... .+++.++|+++++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 62 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKG-VKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGP 62 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCC-cEEEEEEcCCChHHhhHHHhCCCccccEEEEEeC
Confidence 5789999999999999999999333333 4444445665555443 899999999999943
No 127
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.51 E-value=5e-07 Score=73.58 Aligned_cols=89 Identities=15% Similarity=0.249 Sum_probs=66.1
Q ss_pred CCCeEEEEEE-cCCChhHHhhhHHHHHHHHHcCC--CCEEEEE-c--------------------------CCCChhHHH
Q 025648 10 SHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE-E--------------------------SAIRPSILS 59 (250)
Q Consensus 10 ~~~~vlV~Fy-a~wC~~C~~~~p~~e~la~~~~~--~~~v~~~-d--------------------------~~~~~~l~~ 59 (250)
.+++++|.|| +.||++|....|.++++++.|.+ +..+.+. | +|....+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4689999999 89999999999999999998853 3333331 0 123346788
Q ss_pred hhCCC------ccCeEEEE--eCceeEEEeC----CCCHHHHHHHHHHhhC
Q 025648 60 KYGVH------GFPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDVTG 98 (250)
Q Consensus 60 ~~~I~------~~PTi~l~--~g~~~~~~~G----~~~~~~l~~fi~~~~~ 98 (250)
+||+. ..|+++++ +|+....+.+ .++.+++.+.|.....
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~ 158 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQF 158 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 89987 57899999 6777777744 3567888888877543
No 128
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.50 E-value=2.8e-07 Score=73.20 Aligned_cols=69 Identities=23% Similarity=0.497 Sum_probs=51.5
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC------CCEEEEEcCCC----------------------ChhHHHhh
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS------IPHFAIEESAI----------------------RPSILSKY 61 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~------~~~v~~~d~~~----------------------~~~l~~~~ 61 (250)
.++.+.++|-|.|||+|+.+-|.+.++.++... +++|..+...+ ..+++.+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 568999999999999999999998888777654 23333322111 13789999
Q ss_pred CCCccCeEEEE--eCceeE
Q 025648 62 GVHGFPTLFLL--NSSMRV 78 (250)
Q Consensus 62 ~I~~~PTi~l~--~g~~~~ 78 (250)
+|.++|++++. +|..+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 99999999999 555443
No 129
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.50 E-value=5.2e-09 Score=78.48 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=57.4
Q ss_pred CCCCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH----------------------HHHHH
Q 025648 101 TASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF----------------------VLLRL 158 (250)
Q Consensus 101 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f----------------------~~~~~ 158 (250)
+.++++++|++.+.... .+++ .+++ |||++|+.+ .|.|..+|..+ ++.+|
T Consensus 3 v~~l~~~~f~~~i~~~~-~vlv---~F~a--~wC~~C~~~--~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~ 74 (108)
T cd02996 3 IVSLTSGNIDDILQSAE-LVLV---NFYA--DWCRFSQML--HPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRY 74 (108)
T ss_pred eEEcCHhhHHHHHhcCC-EEEE---EEEC--CCCHHHHhh--HHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhC
Confidence 34567778887664322 2222 3467 999999999 99999998753 23799
Q ss_pred HHHhhhhHHHHhhhHHHHHHHhhcccccccchHHHHh-hHH-HHHHHh
Q 025648 159 VYIFLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTYLN-RAI-QLFKTL 204 (250)
Q Consensus 159 ~i~~fPti~~f~~~~~~~~~~~~~~~~~~~~~~~y~g-r~~-~~~~~l 204 (250)
+|++|||+++|++|. ..+..|.| |.. .|.+||
T Consensus 75 ~v~~~Ptl~~~~~g~--------------~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 75 RINKYPTLKLFRNGM--------------MMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCCcCCEEEEEeCCc--------------CcceecCCCCCHHHHHhhC
Confidence 999999999998876 33455666 443 666654
No 130
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.49 E-value=7.2e-09 Score=76.58 Aligned_cols=63 Identities=17% Similarity=0.078 Sum_probs=48.3
Q ss_pred CCCCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH-----------------HHHHHHHHhh
Q 025648 101 TASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF-----------------VLLRLVYIFL 163 (250)
Q Consensus 101 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f-----------------~~~~~~i~~f 163 (250)
+.+++.++|++++... .+ ..+++ |||++|+.+ .|.|..+|..+ ++.+|+|.+|
T Consensus 3 v~~l~~~~f~~~~~~~---~l---v~f~a--~wC~~C~~~--~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~ 72 (101)
T cd02994 3 VVELTDSNWTLVLEGE---WM---IEFYA--PWCPACQQL--QPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTAL 72 (101)
T ss_pred eEEcChhhHHHHhCCC---EE---EEEEC--CCCHHHHHH--hHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCccc
Confidence 4456777888765431 22 24577 999999999 99999999865 2378999999
Q ss_pred hhHHHHhhhH
Q 025648 164 PTLLIFAQFT 173 (250)
Q Consensus 164 Pti~~f~~~~ 173 (250)
||+++|.+|.
T Consensus 73 Pt~~~~~~g~ 82 (101)
T cd02994 73 PTIYHAKDGV 82 (101)
T ss_pred CEEEEeCCCC
Confidence 9999987764
No 131
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.48 E-value=9.8e-09 Score=76.74 Aligned_cols=86 Identities=20% Similarity=0.165 Sum_probs=60.0
Q ss_pred CCCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH------------------HHHHHHHHhh
Q 025648 102 ASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF------------------VLLRLVYIFL 163 (250)
Q Consensus 102 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f------------------~~~~~~i~~f 163 (250)
.+++++++++.+......++. .+++ |||++|+.+ .|.+..+|..+ ++.+++|.++
T Consensus 3 ~~l~~~~~~~~i~~~~~~~lv---~f~a--~wC~~C~~~--~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~ 75 (109)
T cd03002 3 YELTPKNFDKVVHNTNYTTLV---EFYA--PWCGHCKNL--KPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGF 75 (109)
T ss_pred EEcchhhHHHHHhcCCCeEEE---EEEC--CCCHHHHhh--ChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcC
Confidence 356667777776554433333 4467 899999999 99999999876 2478999999
Q ss_pred hhHHHHhhhHHHHHHHhhcccccccchHHHHh-hH-HHHHHHh
Q 025648 164 PTLLIFAQFTWRRLIRNLKLGSLLEHPRTYLN-RA-IQLFKTL 204 (250)
Q Consensus 164 Pti~~f~~~~~~~~~~~~~~~~~~~~~~~y~g-r~-~~~~~~l 204 (250)
||+++|.+|.- .....+..|.| |. +++.+|+
T Consensus 76 Pt~~~~~~~~~----------~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 76 PTLKVFRPPKK----------ASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred CEEEEEeCCCc----------ccccccccccCccCHHHHHHHh
Confidence 99999988750 00123566777 44 3777775
No 132
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.47 E-value=4.8e-07 Score=63.03 Aligned_cols=69 Identities=13% Similarity=0.281 Sum_probs=45.9
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHh-----hCCCccCeEEEE-eCceeEEEeCCCCHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSK-----YGVHGFPTLFLL-NSSMRVRYHGSRTLDS 88 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~-----~~I~~~PTi~l~-~g~~~~~~~G~~~~~~ 88 (250)
++.|+++||++|+++.+.++++.-.| ...|.++.+..... +++.++|+++ + +|..+. ..+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~------~~idi~~~~~~~~~~~~~~~~~~~vP~i~-~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAY------EWVDIEEDEGAADRVVSVNNGNMTVPTVK-FADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCce------EEEeCcCCHhHHHHHHHHhCCCceeCEEE-ECCCeEec----CCCHHH
Confidence 67899999999999999998775443 23344444444444 3899999984 5 554322 445556
Q ss_pred HHHHHH
Q 025648 89 LVAFYS 94 (250)
Q Consensus 89 l~~fi~ 94 (250)
+.+.+.
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 665553
No 133
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.46 E-value=1e-06 Score=69.08 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=55.5
Q ss_pred CCCeEEEEEEcCC-ChhHHhhhHHHHHHHHHcCCCCEEEEEcC---------------------CCC-hhHHHhhCCCc-
Q 025648 10 SHEYVAVLFYASW-CPFSRNFRPSFSVLSSLYSSIPHFAIEES---------------------AIR-PSILSKYGVHG- 65 (250)
Q Consensus 10 ~~~~vlV~Fya~w-C~~C~~~~p~~e~la~~~~~~~~v~~~d~---------------------~~~-~~l~~~~~I~~- 65 (250)
.+++++|.||+.| |++|+...|.++++.++++++.++++... +.. ..+++.||+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 4689999999999 69999999999999999987665555311 112 46778888863
Q ss_pred -----cCeEEEE--eCceeEEEeC
Q 025648 66 -----FPTLFLL--NSSMRVRYHG 82 (250)
Q Consensus 66 -----~PTi~l~--~g~~~~~~~G 82 (250)
.|+.+++ +|+.+..+.|
T Consensus 105 ~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 105 DLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred cCCccceEEEEEcCCCeEEEEEEC
Confidence 6888888 6777777665
No 134
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.43 E-value=1.3e-08 Score=88.02 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=37.8
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHHH-------------------HHHHHHHhhhhHHHHhhhH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAFV-------------------LLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f~-------------------~~~~~i~~fPti~~f~~~~ 173 (250)
.+|+ |||+|||++ .|.|..++.... ..+++|++||||++|..+-
T Consensus 49 dFYA--PWC~HCKkL--ePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 49 DFYA--PWCAHCKKL--EPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDH 111 (468)
T ss_pred Eeec--hhhhhcccc--cchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCe
Confidence 4477 999999999 999998887662 3899999999999998754
No 135
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.43 E-value=2.3e-06 Score=70.65 Aligned_cols=87 Identities=9% Similarity=0.145 Sum_probs=64.3
Q ss_pred CCCeEEEEEE-cCCChhHHhhhHHHHHHHHHcC--CCCEEEEE--c----------------------CCCChhHHHhhC
Q 025648 10 SHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYS--SIPHFAIE--E----------------------SAIRPSILSKYG 62 (250)
Q Consensus 10 ~~~~vlV~Fy-a~wC~~C~~~~p~~e~la~~~~--~~~~v~~~--d----------------------~~~~~~l~~~~~ 62 (250)
.+++++|.|| +.||+.|....|.++++.+.+. ++..+++. + +|...++++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4679999999 9999999999999999998875 34444432 1 112347888999
Q ss_pred CC------ccCeEEEE--eCceeEEEeC----CCCHHHHHHHHHHh
Q 025648 63 VH------GFPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDV 96 (250)
Q Consensus 63 I~------~~PTi~l~--~g~~~~~~~G----~~~~~~l~~fi~~~ 96 (250)
|. ..|+.+++ +|.....+.+ .++.+++.+.|+..
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 86 46999999 6776666533 35888888887644
No 136
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.42 E-value=2.1e-06 Score=67.62 Aligned_cols=83 Identities=16% Similarity=0.296 Sum_probs=57.7
Q ss_pred CCeEEEEEE-cCCChhHHhhhHHHHHHHHHcCC--CCEEEEE--------------------cCCCC--hhHHHhhCCCc
Q 025648 11 HEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE--------------------ESAIR--PSILSKYGVHG 65 (250)
Q Consensus 11 ~~~vlV~Fy-a~wC~~C~~~~p~~e~la~~~~~--~~~v~~~--------------------d~~~~--~~l~~~~~I~~ 65 (250)
+++++|.|| ++||+.|....|.++++.+.+++ +..+++. -+|.. ..+.+.||+..
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence 378888887 99999999999999999998863 4444431 11223 56788889873
Q ss_pred ----cC--eEEEE--eCceeEEEeCC----CCHHHHHHHH
Q 025648 66 ----FP--TLFLL--NSSMRVRYHGS----RTLDSLVAFY 93 (250)
Q Consensus 66 ----~P--Ti~l~--~g~~~~~~~G~----~~~~~l~~fi 93 (250)
+| +++++ +|+.+..+.|. ++..++.+-|
T Consensus 108 ~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 108 EDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred ccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 33 77778 67777777774 3455555443
No 137
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.41 E-value=1.4e-06 Score=68.41 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=29.5
Q ss_pred CCCeEEEEE-EcCCChhHHhhhHHHHHHHHHcC--CCCEEEE
Q 025648 10 SHEYVAVLF-YASWCPFSRNFRPSFSVLSSLYS--SIPHFAI 48 (250)
Q Consensus 10 ~~~~vlV~F-ya~wC~~C~~~~p~~e~la~~~~--~~~~v~~ 48 (250)
.+++++|.| +++||++|+...|.++++.+++. ++..+++
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V 63 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAV 63 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEE
Confidence 345555555 59999999999999999999984 4555555
No 138
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.39 E-value=1.6e-08 Score=76.19 Aligned_cols=83 Identities=19% Similarity=0.342 Sum_probs=58.0
Q ss_pred CCCCCCCCccccCCCC--CcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHHH------------------HH-HHH
Q 025648 101 TASLDKISPDKVGKAS--NHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV------------------LL-RLV 159 (250)
Q Consensus 101 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f~------------------~~-~~~ 159 (250)
+.+++.++|+.++... ...++. ..++ |||++|+.+ .|.+..+|..+. +. .++
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv---~f~a--~wC~~C~~~--~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~ 75 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLV---VLYA--PWCPFCQAM--EASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQ 75 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEE---EEEC--CCCHHHHHH--hHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcC
Confidence 4456677777776432 222222 3466 999999999 999999998762 23 488
Q ss_pred HHhhhhHHHHhhhHHHHHHHhhcccccccchHHHHh--hHH-HHHHHh
Q 025648 160 YIFLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTYLN--RAI-QLFKTL 204 (250)
Q Consensus 160 i~~fPti~~f~~~~~~~~~~~~~~~~~~~~~~~y~g--r~~-~~~~~l 204 (250)
|..|||+++|.+|. ..+..|.| |.. .|.+||
T Consensus 76 v~~~Pti~~f~~~~--------------~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 76 LKSFPTILFFPKNS--------------RQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCcCCEEEEEcCCC--------------CCceeccCCCCCHHHHHhhC
Confidence 99999999998876 45666776 443 666664
No 139
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.35 E-value=2.1e-08 Score=76.96 Aligned_cols=84 Identities=15% Similarity=0.017 Sum_probs=57.9
Q ss_pred CCCCCCCCccccCCCCCcccccCCCCCCCCCcCCCC--hhhhcCchHHHHHHHHHH------------------HHHHHH
Q 025648 101 TASLDKISPDKVGKASNHEKHNNTEEESCPFSWARS--PENLLQQETYLALATAFV------------------LLRLVY 160 (250)
Q Consensus 101 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~--ck~~~~~~~~~~lA~~f~------------------~~~~~i 160 (250)
+..+++++|++.+..+.....+++ ++ +||++ |+++.-.|..+++|..++ ..+|+|
T Consensus 11 v~~lt~~nF~~~v~~~~~~vvv~f---~a--~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 11 VIDLNEKNYKQVLKKYDVLCLLYH---EP--VESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred eeeCChhhHHHHHHhCCceEEEEE---CC--CcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC
Confidence 345678889988766554333322 34 77764 993322888888888773 399999
Q ss_pred HhhhhHHHHhhhHHHHHHHhhcccccccchHHHHh-hHH-HHHHHhc
Q 025648 161 IFLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTYLN-RAI-QLFKTLN 205 (250)
Q Consensus 161 ~~fPti~~f~~~~~~~~~~~~~~~~~~~~~~~y~g-r~~-~~~~~l~ 205 (250)
+++|||++|.+|. . ..|.| |.+ .+.+||+
T Consensus 86 ~~iPTl~lfk~G~--------------~--v~~~G~~~~~~l~~~l~ 116 (120)
T cd03065 86 DEEDSIYVFKDDE--------------V--IEYDGEFAADTLVEFLL 116 (120)
T ss_pred ccccEEEEEECCE--------------E--EEeeCCCCHHHHHHHHH
Confidence 9999999999876 2 23667 554 6777766
No 140
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.34 E-value=2.3e-08 Score=73.79 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=56.0
Q ss_pred CCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH----------------HHHHHHHHhhhhH
Q 025648 103 SLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF----------------VLLRLVYIFLPTL 166 (250)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f----------------~~~~~~i~~fPti 166 (250)
+++++++++.+......+.. ..++ |||++|+.+ .|.+..+|..+ ++.+++|.++||+
T Consensus 4 ~l~~~~~~~~i~~~~~~vlv---~f~a--~~C~~C~~~--~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~ 76 (103)
T cd03001 4 ELTDSNFDKKVLNSDDVWLV---EFYA--PWCGHCKNL--APEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTI 76 (103)
T ss_pred EcCHHhHHHHHhcCCCcEEE---EEEC--CCCHHHHHH--hHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEE
Confidence 44556666554443322222 3356 899999999 99999999887 3489999999999
Q ss_pred HHHhhhHHHHHHHhhcccccccchHHHHh-hHH-HHHHHh
Q 025648 167 LIFAQFTWRRLIRNLKLGSLLEHPRTYLN-RAI-QLFKTL 204 (250)
Q Consensus 167 ~~f~~~~~~~~~~~~~~~~~~~~~~~y~g-r~~-~~~~~l 204 (250)
++|.+|. ..+..|.| +.. +|.+|+
T Consensus 77 ~~~~~~~--------------~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 77 KVFGAGK--------------NSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEECCCC--------------cceeecCCCCCHHHHHHHh
Confidence 9999874 33555665 443 566654
No 141
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.34 E-value=6.4e-09 Score=76.45 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=61.6
Q ss_pred CCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH----------------HHHHHHHHhhhhH
Q 025648 103 SLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF----------------VLLRLVYIFLPTL 166 (250)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f----------------~~~~~~i~~fPti 166 (250)
.++.++|++.+........+ ..+. |||++|+.+ .|.+..++..+ ++.+|+|.++||+
T Consensus 3 ~lt~~~f~~~i~~~~~~vvv---~f~~--~~C~~C~~~--~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~ 75 (103)
T PF00085_consen 3 VLTDENFEKFINESDKPVVV---YFYA--PWCPPCKAF--KPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTI 75 (103)
T ss_dssp EESTTTHHHHHTTTSSEEEE---EEES--TTSHHHHHH--HHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEE
T ss_pred ECCHHHHHHHHHccCCCEEE---EEeC--CCCCccccc--cceecccccccccccccchhhhhccchhhhccCCCCCCEE
Confidence 46778888877663333333 2355 899999999 99999999987 3599999999999
Q ss_pred HHHhhhHHHHHHHhhcccccccchHHHHh-hH-HHHHHHhcc
Q 025648 167 LIFAQFTWRRLIRNLKLGSLLEHPRTYLN-RA-IQLFKTLNE 206 (250)
Q Consensus 167 ~~f~~~~~~~~~~~~~~~~~~~~~~~y~g-r~-~~~~~~l~~ 206 (250)
++|.+|. . ...|.| +. ..|.+||++
T Consensus 76 ~~~~~g~--------------~-~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 76 IFFKNGK--------------E-VKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp EEEETTE--------------E-EEEEESSSSHHHHHHHHHH
T ss_pred EEEECCc--------------E-EEEEECCCCHHHHHHHHHc
Confidence 9998876 3 236666 34 388888874
No 142
>PLN02309 5'-adenylylsulfate reductase
Probab=98.32 E-value=2.2e-08 Score=93.01 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=62.4
Q ss_pred CCCCCCCCccccCCC--CCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHHH------------------HH-HHH
Q 025648 101 TASLDKISPDKVGKA--SNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV------------------LL-RLV 159 (250)
Q Consensus 101 ~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f~------------------~~-~~~ 159 (250)
+..++.+++++++.. ....+++ .+++ |||++|+.| .|.|+.+|..|. +. +|+
T Consensus 347 Vv~Lt~~nfe~ll~~~~~~k~vlV---~FyA--pWC~~Cq~m--~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~ 419 (457)
T PLN02309 347 VVALSRAGIENLLKLENRKEPWLV---VLYA--PWCPFCQAM--EASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQ 419 (457)
T ss_pred cEECCHHHHHHHHHhhcCCCeEEE---EEEC--CCChHHHHH--HHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCC
Confidence 344566666665432 1212222 3467 999999999 999999998872 22 589
Q ss_pred HHhhhhHHHHhhhHHHHHHHhhcccccccchHHHHh--hHH-HHHHHhccc
Q 025648 160 YIFLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTYLN--RAI-QLFKTLNEP 207 (250)
Q Consensus 160 i~~fPti~~f~~~~~~~~~~~~~~~~~~~~~~~y~g--r~~-~~~~~l~~~ 207 (250)
|.+||||++|++|. ..+..|.| |.. .|.+|++.+
T Consensus 420 I~~~PTil~f~~g~--------------~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 420 LGSFPTILLFPKNS--------------SRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CceeeEEEEEeCCC--------------CCeeecCCCCcCHHHHHHHHHHh
Confidence 99999999999887 67888974 654 999999854
No 143
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.32 E-value=3.6e-06 Score=73.20 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=65.6
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeC------
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHG------ 82 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G------ 82 (250)
.+..|+|.||.+.++.|..|...+..||..|+.+.++.+.... -+ +...|.+..+|||++| +|..+..+.|
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~-~~-~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g 222 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASK-CP-ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLG 222 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECG-CC-TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhc-cC-cccCCcccCCCEEEEEECCEEEEeEEehHHhcC
Confidence 3567999999999999999999999999999998887775322 22 6788999999999999 8888877765
Q ss_pred -CCCHHHHHHHHHHhh
Q 025648 83 -SRTLDSLVAFYSDVT 97 (250)
Q Consensus 83 -~~~~~~l~~fi~~~~ 97 (250)
..+.++|..|+.++-
T Consensus 223 ~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 223 DDFFTEDLEAFLIEYG 238 (265)
T ss_dssp TT--HHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHcC
Confidence 346788888888764
No 144
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.32 E-value=3.1e-08 Score=92.14 Aligned_cols=85 Identities=21% Similarity=0.311 Sum_probs=62.9
Q ss_pred CCCCCCCCccccCCC--CCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHHH-------------------HHHHH
Q 025648 101 TASLDKISPDKVGKA--SNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-------------------LLRLV 159 (250)
Q Consensus 101 ~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f~-------------------~~~~~ 159 (250)
+..++.++|+.++.. ....+++ .+|+ |||++|+.| .|.|+.+|..|. +.+|+
T Consensus 353 Vv~L~~~nf~~~v~~~~~~k~VLV---~FyA--pWC~~Ck~m--~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~ 425 (463)
T TIGR00424 353 VVSLSRPGIENLLKLEERKEAWLV---VLYA--PWCPFCQAM--EASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQ 425 (463)
T ss_pred eEECCHHHHHHHHhhhcCCCeEEE---EEEC--CCChHHHHH--HHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcC
Confidence 345666777776642 1212222 4577 999999999 999999998762 14689
Q ss_pred HHhhhhHHHHhhhHHHHHHHhhcccccccchHHHH-h-hHH-HHHHHhcc
Q 025648 160 YIFLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTYL-N-RAI-QLFKTLNE 206 (250)
Q Consensus 160 i~~fPti~~f~~~~~~~~~~~~~~~~~~~~~~~y~-g-r~~-~~~~~l~~ 206 (250)
|.+|||+++|++|. ..+..|. | |.. .|..|+|.
T Consensus 426 I~~~PTii~Fk~g~--------------~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 426 LGSFPTILFFPKHS--------------SRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred CCccceEEEEECCC--------------CCceeCCCCCCCHHHHHHHHHh
Confidence 99999999999987 6678887 4 765 88899883
No 145
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=8.6e-06 Score=64.36 Aligned_cols=90 Identities=13% Similarity=0.354 Sum_probs=66.1
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHH---HHHHHHcCC-CCEEEEE------------c---CCCChhHHHhhCCCccCe
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYSS-IPHFAIE------------E---SAIRPSILSKYGVHGFPT 68 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~---e~la~~~~~-~~~v~~~------------d---~~~~~~l~~~~~I~~~PT 68 (250)
...++..+++|-++.|++|.++...+ .++.+.+.+ ...+.+. + ....++|++.|+|+++||
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPt 118 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPT 118 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCce
Confidence 45788999999999999999997665 334444433 1111111 1 112358999999999999
Q ss_pred EEEE--eCceeEEEeCCCCHHHHHHHHHHhh
Q 025648 69 LFLL--NSSMRVRYHGSRTLDSLVAFYSDVT 97 (250)
Q Consensus 69 i~l~--~g~~~~~~~G~~~~~~l~~fi~~~~ 97 (250)
+++| +|+.+....|.+..+++..-+.-..
T Consensus 119 fvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa 149 (182)
T COG2143 119 FVFFDKTGKTILELPGYMPPEQFLAVLKYVA 149 (182)
T ss_pred EEEEcCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence 9999 7788999999999999887766543
No 146
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.28 E-value=2.1e-06 Score=60.85 Aligned_cols=71 Identities=20% Similarity=0.449 Sum_probs=46.8
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCC-CCEEEEEcCCCCh----hHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSL 89 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~-~~~v~~~d~~~~~----~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l 89 (250)
++.|+++|||+|+++.+.++++. .+. ...+.++..+... .+.+.+|+.++|++++ +|+.+ |+ .+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i-~g~~i----gg--~~~~ 71 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI-NGKFI----GG--CSDL 71 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE-CCEEE----cC--HHHH
Confidence 47899999999999999999987 322 3344443322222 3677789999999854 66542 22 3555
Q ss_pred HHHHH
Q 025648 90 VAFYS 94 (250)
Q Consensus 90 ~~fi~ 94 (250)
.+..+
T Consensus 72 ~~~~~ 76 (84)
T TIGR02180 72 LALYK 76 (84)
T ss_pred HHHHH
Confidence 55544
No 147
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.27 E-value=6.8e-06 Score=65.34 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=57.7
Q ss_pred CCCeEEEEEEcC-CChhHHhhhHHHHHHHHHcCC--CCEEEEEc--------------------CCCChhHHHhhCCCcc
Q 025648 10 SHEYVAVLFYAS-WCPFSRNFRPSFSVLSSLYSS--IPHFAIEE--------------------SAIRPSILSKYGVHGF 66 (250)
Q Consensus 10 ~~~~vlV~Fya~-wC~~C~~~~p~~e~la~~~~~--~~~v~~~d--------------------~~~~~~l~~~~~I~~~ 66 (250)
.+++++|.||+. ||+.|....+.+.++.+.+.+ +..+++.- ++....+.++||+...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 567899999976 688899999999999888753 44444311 1233578888998654
Q ss_pred ------------CeEEEE--eCceeEEEeCCCCHHHHH
Q 025648 67 ------------PTLFLL--NSSMRVRYHGSRTLDSLV 90 (250)
Q Consensus 67 ------------PTi~l~--~g~~~~~~~G~~~~~~l~ 90 (250)
|+.+++ +|+.+..|.|....+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~ 146 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHD 146 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHH
Confidence 667777 788888888865554433
No 148
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.27 E-value=3e-06 Score=81.29 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=103.3
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE--eCc-eeEEEeCCCCHH
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL--NSS-MRVRYHGSRTLD 87 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~--~g~-~~~~~~G~~~~~ 87 (250)
+.+.++.|+.+.|..|..+...++++++.- +.+.+...|...+++++++|+|...|++.++ +++ .-.+|.|--.-.
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s-~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~ 444 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFASLS-EKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGH 444 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHhcC-CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccH
Confidence 345688888999999999999999999655 4455566677778899999999999999998 333 348999977777
Q ss_pred HHHHHHHHhhCCC--CCCCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH------------
Q 025648 88 SLVAFYSDVTGMN--TASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF------------ 153 (250)
Q Consensus 88 ~l~~fi~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f------------ 153 (250)
++..||..++... ...++++..+.+-..+...... .+.. |+|..|.++ ......+|..-
T Consensus 445 Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~---v~~~--~~C~~Cp~~--~~~~~~~~~~~~~i~~~~i~~~~ 517 (555)
T TIGR03143 445 ELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIK---IGVS--LSCTLCPDV--VLAAQRIASLNPNVEAEMIDVSH 517 (555)
T ss_pred hHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEE---EEEC--CCCCCcHHH--HHHHHHHHHhCCCceEEEEECcc
Confidence 7777777765433 3345555455443332221111 1122 788888887 55555555542
Q ss_pred ---HHHHHHHHhhhhHHH
Q 025648 154 ---VLLRLVYIFLPTLLI 168 (250)
Q Consensus 154 ---~~~~~~i~~fPti~~ 168 (250)
+..+|+|.+-|++++
T Consensus 518 ~~~~~~~~~v~~vP~~~i 535 (555)
T TIGR03143 518 FPDLKDEYGIMSVPAIVV 535 (555)
T ss_pred cHHHHHhCCceecCEEEE
Confidence 236899999999865
No 149
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.27 E-value=7.5e-06 Score=70.71 Aligned_cols=88 Identities=24% Similarity=0.372 Sum_probs=67.2
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEE-cCC---------CChhHHHhhCCCccCeEEEE--e-Cce
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE-ESA---------IRPSILSKYGVHGFPTLFLL--N-SSM 76 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~-d~~---------~~~~l~~~~~I~~~PTi~l~--~-g~~ 76 (250)
.++.-+|.||.+.|++|+++.|++..+++.|+ +..+.+. |.. .+..+++++||..+|+++++ + ++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 34588999999999999999999999999995 3333331 221 23568899999999999999 3 333
Q ss_pred eEEEeCCCCHHHHHHHHHHhhC
Q 025648 77 RVRYHGSRTLDSLVAFYSDVTG 98 (250)
Q Consensus 77 ~~~~~G~~~~~~l~~fi~~~~~ 98 (250)
...-.|..+.++|.+-|...+.
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHHh
Confidence 4455689999999888877653
No 150
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.26 E-value=1.1e-05 Score=66.78 Aligned_cols=88 Identities=8% Similarity=0.133 Sum_probs=65.7
Q ss_pred CCCeEEEEEE-cCCChhHHhhhHHHHHHHHHcCC--CCEEEEE------------------------cCCCChhHHHhhC
Q 025648 10 SHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE------------------------ESAIRPSILSKYG 62 (250)
Q Consensus 10 ~~~~vlV~Fy-a~wC~~C~~~~p~~e~la~~~~~--~~~v~~~------------------------d~~~~~~l~~~~~ 62 (250)
.++++++.|| +.||+.|....+.|.++.++|.+ ...+++. -+|.+..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5678999999 99999999999999999999853 3333331 1123468899999
Q ss_pred C----Ccc--CeEEEE--eCceeEEEeC----CCCHHHHHHHHHHhh
Q 025648 63 V----HGF--PTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDVT 97 (250)
Q Consensus 63 I----~~~--PTi~l~--~g~~~~~~~G----~~~~~~l~~fi~~~~ 97 (250)
+ .++ |+.+++ +|+....+.. .++.+++.+.+....
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 8 366 999999 5666555432 478999999887654
No 151
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.25 E-value=6.6e-06 Score=59.00 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=54.7
Q ss_pred EEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCC----hhHHHhhC--CCccCeEEEEeCceeEEEeCCCCHH
Q 025648 14 VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYG--VHGFPTLFLLNSSMRVRYHGSRTLD 87 (250)
Q Consensus 14 vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~----~~l~~~~~--I~~~PTi~l~~g~~~~~~~G~~~~~ 87 (250)
-++.|+.+||++|++....++++...+.++....+ |.+.+ .++....+ +.++|++++ +|+.+ | ..+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~i-di~~~~~~~~el~~~~~~~~~~vP~ifi-~g~~i----g--g~~ 73 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYV-DIHAEGISKADLEKTVGKPVETVPQIFV-DQKHI----G--GCT 73 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEE-ECCCChHHHHHHHHHHCCCCCcCCEEEE-CCEEE----c--CHH
Confidence 36889999999999999999999987766543333 33332 34555555 589999865 77543 2 447
Q ss_pred HHHHHHHHhhC
Q 025648 88 SLVAFYSDVTG 98 (250)
Q Consensus 88 ~l~~fi~~~~~ 98 (250)
+|.+++...++
T Consensus 74 ~~~~~~~~~~~ 84 (85)
T PRK11200 74 DFEAYVKENLG 84 (85)
T ss_pred HHHHHHHHhcc
Confidence 88888887765
No 152
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.24 E-value=9.1e-06 Score=69.84 Aligned_cols=87 Identities=22% Similarity=0.349 Sum_probs=66.0
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC-CCEEEEEc--------CCCChhHHHhhCCCccCeEEEE--e-CceeE
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEE--------SAIRPSILSKYGVHGFPTLFLL--N-SSMRV 78 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~-~~~v~~~d--------~~~~~~l~~~~~I~~~PTi~l~--~-g~~~~ 78 (250)
++.-|++||.+.|++|+++.|++..+++.|+= +..|.+|. ...+...++++||..+|+++++ + ++...
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 45789999999999999999999999999953 22333321 1123446789999999999999 3 34445
Q ss_pred EEeCCCCHHHHHHHHHHhh
Q 025648 79 RYHGSRTLDSLVAFYSDVT 97 (250)
Q Consensus 79 ~~~G~~~~~~l~~fi~~~~ 97 (250)
.-.|..+.++|.+-|...+
T Consensus 223 v~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 223 LSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EeeccCCHHHHHHHHHHHH
Confidence 5678999999988877654
No 153
>PRK15000 peroxidase; Provisional
Probab=98.21 E-value=1.1e-05 Score=67.49 Aligned_cols=87 Identities=13% Similarity=0.297 Sum_probs=66.1
Q ss_pred CCCeEEEEEEc-CCChhHHhhhHHHHHHHHHcCC--CCEEEEE---------------------------cCCCChhHHH
Q 025648 10 SHEYVAVLFYA-SWCPFSRNFRPSFSVLSSLYSS--IPHFAIE---------------------------ESAIRPSILS 59 (250)
Q Consensus 10 ~~~~vlV~Fya-~wC~~C~~~~p~~e~la~~~~~--~~~v~~~---------------------------d~~~~~~l~~ 59 (250)
.+++++|.||+ .||+.|....+.|.++.++|.+ ...+++. -+|...++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 57899999999 5999999999999999998863 3333331 0223457888
Q ss_pred hhCCC------ccCeEEEE--eCceeEEEeC----CCCHHHHHHHHHHh
Q 025648 60 KYGVH------GFPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDV 96 (250)
Q Consensus 60 ~~~I~------~~PTi~l~--~g~~~~~~~G----~~~~~~l~~fi~~~ 96 (250)
.||+. ++|+.+++ +|.....+.+ +++.+++.+.++..
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 89987 79999999 6666666655 46889999888764
No 154
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.21 E-value=9.6e-06 Score=61.92 Aligned_cols=89 Identities=13% Similarity=0.158 Sum_probs=65.7
Q ss_pred ccCCCeEEEEEEcC----CChhHHhhh--HHHHHHHHHcCCCCEEEEEc-CCCChhHHHhhCCCccCeEEEE---eCc--
Q 025648 8 KNSHEYVAVLFYAS----WCPFSRNFR--PSFSVLSSLYSSIPHFAIEE-SAIRPSILSKYGVHGFPTLFLL---NSS-- 75 (250)
Q Consensus 8 ~~~~~~vlV~Fya~----wC~~C~~~~--p~~e~la~~~~~~~~v~~~d-~~~~~~l~~~~~I~~~PTi~l~---~g~-- 75 (250)
.++.|.++|++|++ ||.+|+... |.+.+.-+. +.+.++.+- ..+..+++..++++++|++.++ +++
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~ 91 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT 91 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence 56789999999999 999998764 344443332 334444432 2345679999999999999998 333
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhC
Q 025648 76 MRVRYHGSRTLDSLVAFYSDVTG 98 (250)
Q Consensus 76 ~~~~~~G~~~~~~l~~fi~~~~~ 98 (250)
.+.+..|.+++++|...+.....
T Consensus 92 vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 92 IVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHh
Confidence 47789999999999999887653
No 155
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.21 E-value=2.8e-06 Score=66.12 Aligned_cols=74 Identities=15% Similarity=0.286 Sum_probs=45.9
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHh---hCCCccCeEEEE--eCceeEEEeC
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSK---YGVHGFPTLFLL--NSSMRVRYHG 82 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~---~~I~~~PTi~l~--~g~~~~~~~G 82 (250)
....+..++-|..+|||.|....|.+.++++..+++ .+.+..-+.++++..+ .|..++||++++ +|+++.++..
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i-~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVPVLAKIAEANPNI-EVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTE-EEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEES
T ss_pred hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCC-eEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcC
Confidence 345567888899999999999999999999998753 4444444455665554 478899999999 4456656543
No 156
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.20 E-value=8.4e-06 Score=68.21 Aligned_cols=88 Identities=14% Similarity=0.238 Sum_probs=63.2
Q ss_pred CCCeEEE-EEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEE--------------------------cCCCChhHHHh
Q 025648 10 SHEYVAV-LFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE--------------------------ESAIRPSILSK 60 (250)
Q Consensus 10 ~~~~vlV-~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~--------------------------d~~~~~~l~~~ 60 (250)
.++.++| .|+++||+.|....+.+.++.++|++ ...+++. -+|...++++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 3555554 68899999999999999999888753 3333331 12234578899
Q ss_pred hCCC------ccCeEEEE--eCceeEEE----eCCCCHHHHHHHHHHhh
Q 025648 61 YGVH------GFPTLFLL--NSSMRVRY----HGSRTLDSLVAFYSDVT 97 (250)
Q Consensus 61 ~~I~------~~PTi~l~--~g~~~~~~----~G~~~~~~l~~fi~~~~ 97 (250)
|||. .+|+++++ +|+..... .++++.+++.+.|+...
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 9984 58999999 55544433 34689999999998764
No 157
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.19 E-value=1.2e-07 Score=70.41 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=37.5
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHH----------------HHHHHHHHhhhhHHHHhhh
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAF----------------VLLRLVYIFLPTLLIFAQF 172 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f----------------~~~~~~i~~fPti~~f~~~ 172 (250)
.+++ |||++|+.+ .|.++++|..| ++.+|+|.+|||+++|.+|
T Consensus 24 ~F~a--~WC~~C~~~--~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 24 LFYA--SWCPFSASF--RPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred EEEC--CCCHHHHhH--hHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC
Confidence 3467 999999999 99999999876 2478999999999999876
No 158
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.18 E-value=4.2e-06 Score=71.54 Aligned_cols=85 Identities=18% Similarity=0.307 Sum_probs=60.9
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEE-------------------------------------EcC
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAI-------------------------------------EES 51 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~-------------------------------------~d~ 51 (250)
.+++.+++.|..+.||+|+++.+.+.++.+.--.+..+.. ..|
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c 184 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASC 184 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccc
Confidence 3567889999999999999999998887542000000000 011
Q ss_pred ----CCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHHh
Q 025648 52 ----AIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDV 96 (250)
Q Consensus 52 ----~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi~~~ 96 (250)
+.+.++++++||+++||+++-+|+.+ .|..+.++|.++|.+.
T Consensus 185 ~~~v~~~~~la~~lgi~gTPtiv~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 185 DVDIADHYALGVQFGVQGTPAIVLSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cchHHHhHHHHHHcCCccccEEEEcCCeEe---eCCCCHHHHHHHHHHc
Confidence 12357899999999999995477543 7889999999999864
No 159
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.13 E-value=8.9e-08 Score=81.27 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=49.9
Q ss_pred CCCCCCCCccccCCCCC----cccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH----------------HHHHHHH
Q 025648 101 TASLDKISPDKVGKASN----HEKHNNTEEESCPFSWARSPENLLQQETYLALATAF----------------VLLRLVY 160 (250)
Q Consensus 101 ~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f----------------~~~~~~i 160 (250)
+.++++++|++++.... ..+++ .+|+ |||++|+.+ .|.|+.+|..+ ++.+|+|
T Consensus 32 Vv~Lt~~nF~~~v~~~~~~~~~~vlV---~FyA--pWC~~Ck~~--~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I 104 (224)
T PTZ00443 32 LVLLNDKNFEKLTQASTGATTGPWFV---KFYA--PWCSHCRKM--APAWERLAKALKGQVNVADLDATRALNLAKRFAI 104 (224)
T ss_pred cEECCHHHHHHHHhhhcccCCCCEEE---EEEC--CCChHHHHH--HHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCC
Confidence 44567777877654321 12222 3477 999999999 99999999887 3489999
Q ss_pred HhhhhHHHHhhhH
Q 025648 161 IFLPTLLIFAQFT 173 (250)
Q Consensus 161 ~~fPti~~f~~~~ 173 (250)
.+|||+++|.+|.
T Consensus 105 ~~~PTl~~f~~G~ 117 (224)
T PTZ00443 105 KGYPTLLLFDKGK 117 (224)
T ss_pred CcCCEEEEEECCE
Confidence 9999999999875
No 160
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.12 E-value=2e-05 Score=61.15 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=54.4
Q ss_pred CCCeEEEEEE-cCCChhHHhhhHHHHHHHHHcC--CCCEEEEEc---------------------CCCChhHHHhhCCCc
Q 025648 10 SHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEE---------------------SAIRPSILSKYGVHG 65 (250)
Q Consensus 10 ~~~~vlV~Fy-a~wC~~C~~~~p~~e~la~~~~--~~~~v~~~d---------------------~~~~~~l~~~~~I~~ 65 (250)
.+++++|.|| +.||+.|....|.+.++.+.+. ++.++++.. .|....+.+.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5789999999 7899999999999999998874 343444321 122346777888876
Q ss_pred cC---------eEEEE--eCceeEEEeCCC
Q 025648 66 FP---------TLFLL--NSSMRVRYHGSR 84 (250)
Q Consensus 66 ~P---------Ti~l~--~g~~~~~~~G~~ 84 (250)
.| +++++ +|+.+..+.|..
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 66 67777 577777777755
No 161
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.09 E-value=1.4e-05 Score=76.68 Aligned_cols=79 Identities=14% Similarity=0.328 Sum_probs=65.6
Q ss_pred CCeE-EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHH
Q 025648 11 HEYV-AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSL 89 (250)
Q Consensus 11 ~~~v-lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l 89 (250)
++++ +-.|.+++|++|.+....+++++...+++. ..+++....++++++|+|.++|++++ |++. .+.|..+.++|
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~-~~~i~~~~~~~~~~~~~v~~vP~~~i-~~~~--~~~G~~~~~~~ 550 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVE-AEMIDVSHFPDLKDEYGIMSVPAIVV-DDQQ--VYFGKKTIEEM 550 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCce-EEEEECcccHHHHHhCCceecCEEEE-CCEE--EEeeCCCHHHH
Confidence 3455 445689999999999999999999988654 56667888999999999999999998 7664 36688899999
Q ss_pred HHHH
Q 025648 90 VAFY 93 (250)
Q Consensus 90 ~~fi 93 (250)
+++|
T Consensus 551 ~~~~ 554 (555)
T TIGR03143 551 LELI 554 (555)
T ss_pred HHhh
Confidence 8876
No 162
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.09 E-value=9.8e-06 Score=66.77 Aligned_cols=38 Identities=8% Similarity=0.189 Sum_probs=31.8
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEE
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAI 48 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~ 48 (250)
.++++||.|||+||++|++ .|.++++.+.|++ ..++++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~ 63 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGF 63 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEe
Confidence 4689999999999999975 8899999999974 455555
No 163
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.09 E-value=3.4e-05 Score=60.50 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=29.1
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS 42 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~ 42 (250)
+.+++++.|+.++||+|+++.|.+.++...+++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 467899999999999999999999998877655
No 164
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.08 E-value=2.3e-07 Score=68.35 Aligned_cols=65 Identities=23% Similarity=0.202 Sum_probs=48.5
Q ss_pred CCCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH-----------------HHHHHHHHhhh
Q 025648 102 ASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF-----------------VLLRLVYIFLP 164 (250)
Q Consensus 102 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f-----------------~~~~~~i~~fP 164 (250)
..++.++|++.+........+ ..++ |||++|+.+ .|.+..+|..+ ++..+++.++|
T Consensus 3 ~~l~~~~f~~~i~~~~~~~~v---~f~~--~~C~~C~~~--~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~P 75 (104)
T cd02995 3 KVVVGKNFDEVVLDSDKDVLV---EFYA--PWCGHCKAL--APIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFP 75 (104)
T ss_pred EEEchhhhHHHHhCCCCcEEE---EEEC--CCCHHHHHH--hhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCC
Confidence 356677787766554333333 3366 999999999 99999999876 23678889999
Q ss_pred hHHHHhhhH
Q 025648 165 TLLIFAQFT 173 (250)
Q Consensus 165 ti~~f~~~~ 173 (250)
|+++|.+|.
T Consensus 76 t~~~~~~~~ 84 (104)
T cd02995 76 TILFFPAGD 84 (104)
T ss_pred EEEEEcCCC
Confidence 999998765
No 165
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.06 E-value=1.3e-05 Score=62.55 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=30.2
Q ss_pred CCCeEEEEEEcCCChh-HHhhhHHHHHHHHHcCC
Q 025648 10 SHEYVAVLFYASWCPF-SRNFRPSFSVLSSLYSS 42 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~-C~~~~p~~e~la~~~~~ 42 (250)
.+++++|.||++||++ |.+..+.++++.+.+.+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~ 54 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA 54 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH
Confidence 5789999999999998 99999999999998864
No 166
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.01 E-value=4.2e-05 Score=52.13 Aligned_cols=67 Identities=16% Similarity=0.316 Sum_probs=42.7
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHh----hCCCccCeEEEEeCceeEEEeCCCCHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSK----YGVHGFPTLFLLNSSMRVRYHGSRTLDSLV 90 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~----~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~ 90 (250)
++.|+++||++|.++...+++. ++ .+...+.+..+...+. .++.++|++++ +|+ ... +.+.+.|.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i-~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~-~~~---~i~-g~~~~~l~ 70 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GI-PFEEVDVDEDPEALEELKKLNGYRSVPVVVI-GDE---HLS-GFRPDKLR 70 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CC-CeEEEeCCCCHHHHHHHHHHcCCcccCEEEE-CCE---EEe-cCCHHHHH
Confidence 5789999999999998888763 22 2233344444443333 37899999976 442 333 35566666
Q ss_pred HH
Q 025648 91 AF 92 (250)
Q Consensus 91 ~f 92 (250)
++
T Consensus 71 ~~ 72 (73)
T cd02976 71 AL 72 (73)
T ss_pred hh
Confidence 54
No 167
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.00 E-value=2.7e-05 Score=74.10 Aligned_cols=84 Identities=15% Similarity=0.252 Sum_probs=71.0
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHH
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLV 90 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~ 90 (250)
+..-+-.|+++.||+|......+++++...+.+. ...+|....++++++|+|.++|++++ +++ ..+.|..+.++|.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~-~~~id~~~~~~~~~~~~v~~VP~~~i-~~~--~~~~g~~~~~~~~ 191 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNPNIT-HTMIDGALFQDEVEARNIMAVPTVFL-NGE--EFGQGRMTLEEIL 191 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCce-EEEEEchhCHhHHHhcCCcccCEEEE-CCc--EEEecCCCHHHHH
Confidence 3445888999999999999999999999888655 55568889999999999999999976 665 4477999999999
Q ss_pred HHHHHhhC
Q 025648 91 AFYSDVTG 98 (250)
Q Consensus 91 ~fi~~~~~ 98 (250)
+.+.+..+
T Consensus 192 ~~~~~~~~ 199 (517)
T PRK15317 192 AKLDTGAA 199 (517)
T ss_pred HHHhcccc
Confidence 99887655
No 168
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.99 E-value=3.8e-05 Score=55.31 Aligned_cols=78 Identities=13% Similarity=0.229 Sum_probs=53.9
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCC----ChhHHHhhCC--CccCeEEEEeCceeEEEeCCCCHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI----RPSILSKYGV--HGFPTLFLLNSSMRVRYHGSRTLDS 88 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~----~~~l~~~~~I--~~~PTi~l~~g~~~~~~~G~~~~~~ 88 (250)
++.|..+|||+|.+....++++...++++....+ |.+. ...+....|- .++|++++ +|+. .| ..++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~i-di~~~~~~~~~l~~~~g~~~~tVP~ifi-~g~~----ig--G~~d 73 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYI-DIHAEGISKADLEKTVGKPVETVPQIFV-DEKH----VG--GCTD 73 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEE-ECCCCHHHHHHHHHHhCCCCCCcCeEEE-CCEE----ec--CHHH
Confidence 6789999999999999999998766655443333 2221 2356666663 79999954 6643 23 3478
Q ss_pred HHHHHHHhhCCC
Q 025648 89 LVAFYSDVTGMN 100 (250)
Q Consensus 89 l~~fi~~~~~~~ 100 (250)
|.+++.+..+.+
T Consensus 74 l~~~~~~~~~~~ 85 (86)
T TIGR02183 74 FEQLVKENFDIE 85 (86)
T ss_pred HHHHHHhccccc
Confidence 888888876543
No 169
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=4.5e-05 Score=58.06 Aligned_cols=91 Identities=12% Similarity=0.218 Sum_probs=74.9
Q ss_pred cccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCcee-EEE----
Q 025648 7 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMR-VRY---- 80 (250)
Q Consensus 7 ~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~-~~~---- 80 (250)
....++.++|-|...|.|.|.++...+.++++...+...+..+|.++.+++.+-|++...||+++| +++-+ ..+
T Consensus 19 ~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmkiD~gtgd 98 (142)
T KOG3414|consen 19 LSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMKIDLGTGD 98 (142)
T ss_pred hcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEEEeeCCCC
Confidence 345678999999999999999999999999999999989999999999999999999999999988 66543 322
Q ss_pred ----eCC-CCHHHHHHHHHHhh
Q 025648 81 ----HGS-RTLDSLVAFYSDVT 97 (250)
Q Consensus 81 ----~G~-~~~~~l~~fi~~~~ 97 (250)
++. .+.+++++.++-..
T Consensus 99 n~Kin~~~~~kq~~Idiie~iy 120 (142)
T KOG3414|consen 99 NNKINFAFEDKQEFIDIIETIY 120 (142)
T ss_pred CceEEEEeccHHHHHHHHHHHH
Confidence 222 35677777776543
No 170
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.99 E-value=5.6e-05 Score=65.61 Aligned_cols=88 Identities=14% Similarity=0.236 Sum_probs=64.3
Q ss_pred CCCeEEEEEE-cCCChhHHhhhHHHHHHHHHcCC--CCEEEEE--c-------------------------CCCChhHHH
Q 025648 10 SHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE--E-------------------------SAIRPSILS 59 (250)
Q Consensus 10 ~~~~vlV~Fy-a~wC~~C~~~~p~~e~la~~~~~--~~~v~~~--d-------------------------~~~~~~l~~ 59 (250)
.++++++.|| +.||+.|....|.|.++.++|.+ ...+++- + +|.+.++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4567888888 89999999999999999998853 3333331 1 112357899
Q ss_pred hhCCC-----ccCeEEEE--eCceeEEEe----CCCCHHHHHHHHHHhh
Q 025648 60 KYGVH-----GFPTLFLL--NSSMRVRYH----GSRTLDSLVAFYSDVT 97 (250)
Q Consensus 60 ~~~I~-----~~PTi~l~--~g~~~~~~~----G~~~~~~l~~fi~~~~ 97 (250)
.||+. ..|+.+++ +|.....+. .+++.+++.+.|+...
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 99985 58999999 566655542 3678999999887653
No 171
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=5.1e-06 Score=69.36 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=65.3
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCHH
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLD 87 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~~ 87 (250)
.++..++.||++||..|+++.-+++.+++..++.. +...+.++.++++..+.|...|++.++ .++.+.+..|.....
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~-~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~ 93 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQ-FLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPF 93 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhe-eeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHH
Confidence 67889999999999999999999999999885544 444477789999999999999999999 888888777755443
No 172
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.96 E-value=7.2e-07 Score=65.68 Aligned_cols=64 Identities=25% Similarity=0.260 Sum_probs=46.8
Q ss_pred CCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHHH-------------------HHHHHHHhh
Q 025648 103 SLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-------------------LLRLVYIFL 163 (250)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f~-------------------~~~~~i~~f 163 (250)
++++++++..+......+.. ..++ +||.+|+.+ .|.+..++..+. +.+++|.++
T Consensus 4 ~l~~~~~~~~~~~~~~~~~v---~f~a--~~C~~C~~~--~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~ 76 (105)
T cd02998 4 ELTDSNFDKVVGDDKKDVLV---EFYA--PWCGHCKNL--APEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGF 76 (105)
T ss_pred EcchhcHHHHhcCCCCcEEE---EEEC--CCCHHHHhh--ChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCc
Confidence 45566676655433322222 3466 899999999 999999998762 478999999
Q ss_pred hhHHHHhhhH
Q 025648 164 PTLLIFAQFT 173 (250)
Q Consensus 164 Pti~~f~~~~ 173 (250)
||+++|.+|.
T Consensus 77 P~~~~~~~~~ 86 (105)
T cd02998 77 PTLKFFPKGS 86 (105)
T ss_pred CEEEEEeCCC
Confidence 9999998775
No 173
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.94 E-value=3.5e-07 Score=67.26 Aligned_cols=62 Identities=21% Similarity=0.182 Sum_probs=46.3
Q ss_pred CCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHHH-------------------HHHHHHHhh
Q 025648 103 SLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-------------------LLRLVYIFL 163 (250)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f~-------------------~~~~~i~~f 163 (250)
.+++++|+..+... .++. ..++ |||++|+.+ .|.+..+|..+. +.+++|.++
T Consensus 4 ~l~~~~f~~~~~~~--~~lv---~f~a--~wC~~C~~~--~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~ 74 (102)
T cd03005 4 ELTEDNFDHHIAEG--NHFV---KFFA--PWCGHCKRL--APTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGY 74 (102)
T ss_pred ECCHHHHHHHhhcC--CEEE---EEEC--CCCHHHHHh--CHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcC
Confidence 45566676665432 1222 3467 899999999 999999988772 378999999
Q ss_pred hhHHHHhhhH
Q 025648 164 PTLLIFAQFT 173 (250)
Q Consensus 164 Pti~~f~~~~ 173 (250)
||+++|.+|.
T Consensus 75 Pt~~~~~~g~ 84 (102)
T cd03005 75 PTLLLFKDGE 84 (102)
T ss_pred CEEEEEeCCC
Confidence 9999998765
No 174
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.93 E-value=0.00019 Score=57.06 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=61.0
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHc--CCCCEEEEEcCCCC---------------------------------
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLY--SSIPHFAIEESAIR--------------------------------- 54 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~--~~~~~v~~~d~~~~--------------------------------- 54 (250)
..+++|+.|+..-||+|.++.+.+.++.+.+ ++.+.+........
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4568899999999999999999999999998 55433333111000
Q ss_pred -----------------------------------hhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHH
Q 025648 55 -----------------------------------PSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSD 95 (250)
Q Consensus 55 -----------------------------------~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi~~ 95 (250)
...+.++||+++||+++ ||+. +.|..+.++|.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i-nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI-NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE-TTCE---EETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE-CCEE---eCCCCCHHHHHHHHcC
Confidence 14567789999999998 8876 4889999999999875
No 175
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.92 E-value=5.9e-05 Score=63.09 Aligned_cols=97 Identities=10% Similarity=0.184 Sum_probs=65.2
Q ss_pred eEEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEE--c------------------------CCCChhHHHhhCCC
Q 025648 13 YVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE--E------------------------SAIRPSILSKYGVH 64 (250)
Q Consensus 13 ~vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~--d------------------------~~~~~~l~~~~~I~ 64 (250)
.+|+.|+++||+.|....+.+.++.++|.+ ...+++. + +|....+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 456688999999999999999999998863 3344431 1 12235788899986
Q ss_pred ----c----cCeEEEE--eCceeEEEeC----CCCHHHHHHHHHHhhCCC-CCCCCCCCc
Q 025648 65 ----G----FPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDVTGMN-TASLDKISP 109 (250)
Q Consensus 65 ----~----~PTi~l~--~g~~~~~~~G----~~~~~~l~~fi~~~~~~~-~~~l~~~~~ 109 (250)
+ .|+.+++ +|+....+.+ .++.+++.+.|+.+.... ....++.++
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~~~~~~~~~p~~w 167 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQLTDKHKVATPANW 167 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhHhhcCcCcCCCC
Confidence 3 3457888 5666655544 578899999987754322 223455554
No 176
>PRK13189 peroxiredoxin; Provisional
Probab=97.91 E-value=0.00011 Score=62.33 Aligned_cols=100 Identities=12% Similarity=0.159 Sum_probs=66.4
Q ss_pred CCCe-EEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEEE--------------------------cCCCChhHHHh
Q 025648 10 SHEY-VAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE--------------------------ESAIRPSILSK 60 (250)
Q Consensus 10 ~~~~-vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~~--------------------------d~~~~~~l~~~ 60 (250)
.++. +|+.|+++||+.|....+.|.+++++|.+ ...+++. -+|....+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 4564 45577899999999999999999998853 3333331 01223578889
Q ss_pred hCCC-------ccCeEEEE--eCceeEEEe----CCCCHHHHHHHHHHhhCCC-CCCCCCCCc
Q 025648 61 YGVH-------GFPTLFLL--NSSMRVRYH----GSRTLDSLVAFYSDVTGMN-TASLDKISP 109 (250)
Q Consensus 61 ~~I~-------~~PTi~l~--~g~~~~~~~----G~~~~~~l~~fi~~~~~~~-~~~l~~~~~ 109 (250)
||+. .+|+++++ +|....... .+++.+++.+.|+...... -..+.+.++
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~~~~~~~~~p~~w 176 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQTSDEKGVATPANW 176 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhHhhcCcCcCCCC
Confidence 9976 47889999 555544443 4678899999998653221 124444444
No 177
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.90 E-value=4.5e-05 Score=58.32 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=42.2
Q ss_pred cCCCeEEEEEEcC-------CChhHHhhhHHHHHHHHHcCCCCEEEEEcC-------CCChhHHH--hhCCCccCeEEEE
Q 025648 9 NSHEYVAVLFYAS-------WCPFSRNFRPSFSVLSSLYSSIPHFAIEES-------AIRPSILS--KYGVHGFPTLFLL 72 (250)
Q Consensus 9 ~~~~~vlV~Fya~-------wC~~C~~~~p~~e~la~~~~~~~~v~~~d~-------~~~~~l~~--~~~I~~~PTi~l~ 72 (250)
+++++++|.|+++ |||.|....|.+++.-...++-..+..+.. +.+..... +++|+++||++-+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 5678999999964 999999999999998888765332222111 11223444 6999999999999
Q ss_pred eC
Q 025648 73 NS 74 (250)
Q Consensus 73 ~g 74 (250)
++
T Consensus 97 ~~ 98 (119)
T PF06110_consen 97 ET 98 (119)
T ss_dssp TS
T ss_pred CC
Confidence 33
No 178
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.90 E-value=0.00014 Score=61.51 Aligned_cols=100 Identities=9% Similarity=0.107 Sum_probs=67.4
Q ss_pred CCCe-EEEEEEcCCChhHHhhhHHHHHHHHHcC--CCCEEEEE--------------------------cCCCChhHHHh
Q 025648 10 SHEY-VAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIE--------------------------ESAIRPSILSK 60 (250)
Q Consensus 10 ~~~~-vlV~Fya~wC~~C~~~~p~~e~la~~~~--~~~~v~~~--------------------------d~~~~~~l~~~ 60 (250)
.++. +|+.|+++|||.|....+.|.++.++|. +...+++. -+|....+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3455 5678999999999999999999999885 33333331 01233578889
Q ss_pred hCCC-------ccCeEEEE--eCceeEEEe----CCCCHHHHHHHHHHhhCC-CCCCCCCCCc
Q 025648 61 YGVH-------GFPTLFLL--NSSMRVRYH----GSRTLDSLVAFYSDVTGM-NTASLDKISP 109 (250)
Q Consensus 61 ~~I~-------~~PTi~l~--~g~~~~~~~----G~~~~~~l~~fi~~~~~~-~~~~l~~~~~ 109 (250)
||+. ..|+++++ +|+....+. ..++.+++.+.|+...-. +-...++.++
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~~~~~~~~p~~w 169 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTADQYGVALPEKW 169 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCC
Confidence 9973 68999999 566555442 256899999998764221 1233455554
No 179
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.90 E-value=9.6e-07 Score=64.67 Aligned_cols=61 Identities=25% Similarity=0.356 Sum_probs=48.0
Q ss_pred CCCCCcCCCChhhhcCchHHHHHHHHHH------------------HHHHHHHhhhhHHHHhhhHHHHHHHhhccccccc
Q 025648 127 ESCPFSWARSPENLLQQETYLALATAFV------------------LLRLVYIFLPTLLIFAQFTWRRLIRNLKLGSLLE 188 (250)
Q Consensus 127 ~~~~~pw~~~ck~~~~~~~~~~lA~~f~------------------~~~~~i~~fPti~~f~~~~~~~~~~~~~~~~~~~ 188 (250)
.++ +||++|+.+ .|.+..+|..|. +.+|+|.++|++.+|.+|. .
T Consensus 20 f~~--~~C~~c~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~--------------~ 81 (102)
T TIGR01126 20 FYA--PWCGHCKNL--APEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK--------------K 81 (102)
T ss_pred EEC--CCCHHHHhh--ChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC--------------c
Confidence 356 899999999 999999888763 4889999999999999876 4
Q ss_pred chHHHHh-hHH-HHHHHhcc
Q 025648 189 HPRTYLN-RAI-QLFKTLNE 206 (250)
Q Consensus 189 ~~~~y~g-r~~-~~~~~l~~ 206 (250)
+..|.| +.. +|.+||.+
T Consensus 82 -~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 82 -PVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred -ceeecCCCCHHHHHHHHHh
Confidence 566776 333 67777764
No 180
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.89 E-value=3.1e-05 Score=64.35 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=53.8
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEE--E------------------------------------E---
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHF--A------------------------------------I--- 48 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v--~------------------------------------~--- 48 (250)
+.+..++.|+.+.||+|+++.+.+.+....+. +..+ . .
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~-v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~ 154 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPNADGVT-VRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASC 154 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhccCceE-EEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcccc
Confidence 45789999999999999999998875111100 0000 0 0
Q ss_pred -EcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHH
Q 025648 49 -EESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 93 (250)
Q Consensus 49 -~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi 93 (250)
.+.+++..+++++||+++||+++-+|.. ..|..+.++|.++|
T Consensus 155 ~~~i~~~~~l~~~~gi~gtPtii~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 155 DNPVAANLALGRQLGVNGTPTIVLADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred CchHHHHHHHHHHcCCCcccEEEECCCeE---ecCCCCHHHHHhhC
Confidence 0111234789999999999998326654 56888888887764
No 181
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=8.5e-07 Score=69.87 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=49.1
Q ss_pred CCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHHHH----------------HHHHHHhhhhHHH
Q 025648 105 DKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL----------------LRLVYIFLPTLLI 168 (250)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f~~----------------~~~~i~~fPti~~ 168 (250)
+..+|++.+..+..-+++ .+++ +|||+|+-| .|..+.++..|.. .+|+|..+||+++
T Consensus 49 s~~~~~~~Vi~S~~PVlV---dF~A--~WCgPCk~l--~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 49 SDSEFDDKVINSDVPVLV---DFHA--EWCGPCKML--GPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred CHHHHHHHHHccCCCEEE---EEec--CcCccHhHh--hHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEE
Confidence 445566555555555555 3467 899999999 9999999999843 9999999999999
Q ss_pred HhhhH
Q 025648 169 FAQFT 173 (250)
Q Consensus 169 f~~~~ 173 (250)
|.+|.
T Consensus 122 fknGe 126 (150)
T KOG0910|consen 122 FKNGE 126 (150)
T ss_pred EECCE
Confidence 99887
No 182
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.84 E-value=0.00016 Score=61.09 Aligned_cols=88 Identities=9% Similarity=0.167 Sum_probs=61.8
Q ss_pred CCCeEE-EEEEcCCChhHHhhhHHHHHHHHHcC--CCCEEEEE--------------------------cCCCChhHHHh
Q 025648 10 SHEYVA-VLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIE--------------------------ESAIRPSILSK 60 (250)
Q Consensus 10 ~~~~vl-V~Fya~wC~~C~~~~p~~e~la~~~~--~~~~v~~~--------------------------d~~~~~~l~~~ 60 (250)
.+++++ +.|+++||+.|....+.|++++++|. +...+++. -+|.+.+++++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 455555 47889999999999999999999985 33333331 11223578888
Q ss_pred hCCC-------ccCeEEEE--eCceeEEEeC----CCCHHHHHHHHHHhh
Q 025648 61 YGVH-------GFPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDVT 97 (250)
Q Consensus 61 ~~I~-------~~PTi~l~--~g~~~~~~~G----~~~~~~l~~fi~~~~ 97 (250)
||+. ..|+.+++ +|.....+.+ +++.+++.+.|+...
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 9974 37889999 5655554432 578999999998753
No 183
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.84 E-value=4.4e-05 Score=61.47 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=43.9
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhH-HH--HHHHHHcCC-CCEEEEEcCCCChhHHHhh--------CCCccCeEEEE--e
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRP-SF--SVLSSLYSS-IPHFAIEESAIRPSILSKY--------GVHGFPTLFLL--N 73 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p-~~--e~la~~~~~-~~~v~~~d~~~~~~l~~~~--------~I~~~PTi~l~--~ 73 (250)
..++++++|.++++||..|+.|.. .| .++++.+.. .+.|. +|.++.+++...| |.-|+|+.+++ +
T Consensus 34 k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~Vk-vDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPd 112 (163)
T PF03190_consen 34 KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVK-VDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPD 112 (163)
T ss_dssp HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEE-EETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TT
T ss_pred HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEE-eccccCccHHHHHHHHHHHhcCCCCCCceEEECCC
Confidence 567899999999999999999975 33 234444433 33444 4778889998888 88999999999 5
Q ss_pred CceeE
Q 025648 74 SSMRV 78 (250)
Q Consensus 74 g~~~~ 78 (250)
|+++.
T Consensus 113 g~p~~ 117 (163)
T PF03190_consen 113 GKPFF 117 (163)
T ss_dssp S-EEE
T ss_pred CCeee
Confidence 55544
No 184
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.79 E-value=1.5e-06 Score=66.03 Aligned_cols=64 Identities=23% Similarity=0.167 Sum_probs=47.4
Q ss_pred CCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHHH---------------------HHHHHHH
Q 025648 103 SLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV---------------------LLRLVYI 161 (250)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f~---------------------~~~~~i~ 161 (250)
++++++|++.+......+.. ..|+ |||++|+.+ .|.|..+|..|. +.+++|.
T Consensus 5 ~l~~~~f~~~i~~~~~~vvV---~f~a--~wC~~C~~~--~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~ 77 (114)
T cd02992 5 VLDAASFNSALLGSPSAWLV---EFYA--SWCGHCRAF--APTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVT 77 (114)
T ss_pred ECCHHhHHHHHhcCCCeEEE---EEEC--CCCHHHHHH--hHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCC
Confidence 45666777665543322222 3467 999999999 999999998652 3678999
Q ss_pred hhhhHHHHhhhH
Q 025648 162 FLPTLLIFAQFT 173 (250)
Q Consensus 162 ~fPti~~f~~~~ 173 (250)
+|||+++|++|.
T Consensus 78 ~~Pt~~lf~~~~ 89 (114)
T cd02992 78 GYPTLRYFPPFS 89 (114)
T ss_pred CCCEEEEECCCC
Confidence 999999998876
No 185
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.79 E-value=0.00021 Score=57.96 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=69.3
Q ss_pred eEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCC--ccCeEEEEe--Cce-eEEEeCCCCHH
Q 025648 13 YVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVH--GFPTLFLLN--SSM-RVRYHGSRTLD 87 (250)
Q Consensus 13 ~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~--~~PTi~l~~--g~~-~~~~~G~~~~~ 87 (250)
++++.|+.........+...++.+++.+++...+..+|++..+.+++.+|+. .+|++++++ ... ...+.|..+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~ 176 (184)
T PF13848_consen 97 PVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPE 176 (184)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHH
T ss_pred eEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHH
Confidence 4888888777888999999999999999998888888998889999999998 899999993 222 22347889999
Q ss_pred HHHHHHHH
Q 025648 88 SLVAFYSD 95 (250)
Q Consensus 88 ~l~~fi~~ 95 (250)
+|.+|+++
T Consensus 177 ~i~~Fl~d 184 (184)
T PF13848_consen 177 SIEKFLND 184 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999974
No 186
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.78 E-value=0.00012 Score=69.60 Aligned_cols=85 Identities=16% Similarity=0.294 Sum_probs=70.9
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHH
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLV 90 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~ 90 (250)
+..-+-.|+++.||+|......+++++...+++. ...+|....++++++|+|.++|++++ |++ ..+.|..+.+++.
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~-~~~id~~~~~~~~~~~~v~~VP~~~i-~~~--~~~~g~~~~~~~~ 192 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNPNIS-HTMIDGALFQDEVEALGIQGVPAVFL-NGE--EFHNGRMDLAELL 192 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCce-EEEEEchhCHHHHHhcCCcccCEEEE-CCc--EEEecCCCHHHHH
Confidence 3455888999999999999999999999988655 55578889999999999999999986 665 3477999999998
Q ss_pred HHHHHhhCC
Q 025648 91 AFYSDVTGM 99 (250)
Q Consensus 91 ~fi~~~~~~ 99 (250)
+.+.+..+.
T Consensus 193 ~~l~~~~~~ 201 (515)
T TIGR03140 193 EKLEETAGV 201 (515)
T ss_pred HHHhhccCc
Confidence 888766443
No 187
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.73 E-value=3.3e-06 Score=63.77 Aligned_cols=44 Identities=9% Similarity=0.119 Sum_probs=37.8
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHHH-----------------HHHHHHHhhhhHHHHhhhH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAFV-----------------LLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f~-----------------~~~~~i~~fPti~~f~~~~ 173 (250)
.+|+ |||++|+.+ .|.+.+++..+. +.+++|.++||+++|.+|.
T Consensus 30 ~F~a--~wC~~C~~~--~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~ 90 (111)
T cd02963 30 KITS--DWCFSCIHI--EPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQ 90 (111)
T ss_pred EEEC--CccHhHHHh--hHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCE
Confidence 3467 999999999 999999998873 3789999999999998765
No 188
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.71 E-value=2.9e-06 Score=64.42 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=39.1
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHH----------------HHHHHHHHhhhhHHHHhhhH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAF----------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f----------------~~~~~~i~~fPti~~f~~~~ 173 (250)
.+++ +||++|+.| .|.++++|..+ +..+|+|.+.||+++|.+|.
T Consensus 20 ~F~A--~WCgpCk~m--~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 20 RFGR--DWDPVCMQM--DEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred EEEC--CCChhHHHH--HHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 3467 999999999 99999999886 24999999999999999987
No 189
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.68 E-value=7.4e-05 Score=52.81 Aligned_cols=74 Identities=19% Similarity=0.349 Sum_probs=46.1
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHH
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSL 89 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l 89 (250)
.++.-++.|..+||++|++....+++..-.| ..+.++.......+....|...+|++++ +|+.+ |+ .++|
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y---~~idi~~~~~~~~~~~~~g~~~vP~i~i-~g~~i----gG--~~~l 74 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYDF---EEIPLGNDARGRSLRAVTGATTVPQVFI-GGKLI----GG--SDEL 74 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCCc---EEEECCCChHHHHHHHHHCCCCcCeEEE-CCEEE----cC--HHHH
Confidence 3455578899999999999998887542222 1222221112245666678999999965 66542 22 2566
Q ss_pred HHHH
Q 025648 90 VAFY 93 (250)
Q Consensus 90 ~~fi 93 (250)
.++|
T Consensus 75 ~~~l 78 (79)
T TIGR02190 75 EAYL 78 (79)
T ss_pred HHHh
Confidence 6654
No 190
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.68 E-value=9.5e-06 Score=61.28 Aligned_cols=75 Identities=20% Similarity=0.102 Sum_probs=54.8
Q ss_pred HHHHHHHhhCCCCCCCCCCCccccCCCCCcccccCCCCCCCCCcC--CCChhhhcCchHHHHHHHHH-------------
Q 025648 89 LVAFYSDVTGMNTASLDKISPDKVGKASNHEKHNNTEEESCPFSW--ARSPENLLQQETYLALATAF------------- 153 (250)
Q Consensus 89 l~~fi~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw--~~~ck~~~~~~~~~~lA~~f------------- 153 (250)
+++++....+.. .++..+|++++.... .... .+++ +| |++|..+ .|.+.++|..|
T Consensus 2 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~v~---~f~~--~~~~cp~c~~i--~P~leela~e~~~~v~f~kVdid~ 71 (111)
T cd02965 2 LVARLQTRHGWP--RVDAATLDDWLAAGG-DLVL---LLAG--DPVRFPEVLDV--AVVLPELLKAFPGRFRAAVVGRAD 71 (111)
T ss_pred HhHHHHHhcCCc--ccccccHHHHHhCCC-CEEE---EecC--CcccCcchhhh--HhHHHHHHHHCCCcEEEEEEECCC
Confidence 345565555543 577789998773322 2222 2355 54 9999999 99999999987
Q ss_pred ---HHHHHHHHhhhhHHHHhhhH
Q 025648 154 ---VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 154 ---~~~~~~i~~fPti~~f~~~~ 173 (250)
+..+|+|.+.||+++|.+|.
T Consensus 72 ~~~la~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 72 EQALAARFGVLRTPALLFFRDGR 94 (111)
T ss_pred CHHHHHHcCCCcCCEEEEEECCE
Confidence 24999999999999999876
No 191
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.67 E-value=3.7e-06 Score=61.26 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=38.0
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHH----------------HHHHHHHHhhhhHHHHhhhH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAF----------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f----------------~~~~~~i~~fPti~~f~~~~ 173 (250)
.+|+ |||++|+.+ .|.+..++..| ++.+|+|.++||+++|.+|.
T Consensus 18 ~f~a--~wC~~C~~~--~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 18 DFWA--PRSPPSKEL--LPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ 77 (96)
T ss_pred EEEC--CCChHHHHH--HHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE
Confidence 3467 999999999 99999999887 24899999999999998765
No 192
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.67 E-value=0.0001 Score=51.85 Aligned_cols=58 Identities=16% Similarity=0.378 Sum_probs=40.0
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCC----ChhHHHhhCCCccCeEEEEeCce
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI----RPSILSKYGVHGFPTLFLLNSSM 76 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~----~~~l~~~~~I~~~PTi~l~~g~~ 76 (250)
++.|+++|||+|+++.+.++++...| ..+.++..+. ...+.+..|+.++|++++ +|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~-~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKP---AVVELDQHEDGSEIQDYLQELTGQRTVPNVFI-GGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCc---EEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE-CCEE
Confidence 57899999999999999999886643 2333322211 124556678999999743 6644
No 193
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.67 E-value=2.1e-06 Score=63.25 Aligned_cols=62 Identities=15% Similarity=0.061 Sum_probs=44.6
Q ss_pred CCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHHH--------------------HHHHHHHhh
Q 025648 104 LDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV--------------------LLRLVYIFL 163 (250)
Q Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f~--------------------~~~~~i~~f 163 (250)
+++.+++..+.... .... .+++ |||++|+.+ .|.+..++..|. +.+++|.+|
T Consensus 5 l~~~~~~~~~~~~~-~~~v---~f~a--~wC~~C~~~--~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~ 76 (104)
T cd02997 5 LTDEDFRKFLKKEK-HVLV---MFYA--PWCGHCKKM--KPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGF 76 (104)
T ss_pred echHhHHHHHhhCC-CEEE---EEEC--CCCHHHHHh--CHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccc
Confidence 44455655544322 2222 3466 899999999 999999988763 268999999
Q ss_pred hhHHHHhhhH
Q 025648 164 PTLLIFAQFT 173 (250)
Q Consensus 164 Pti~~f~~~~ 173 (250)
||+++|.+|.
T Consensus 77 Pt~~~~~~g~ 86 (104)
T cd02997 77 PTFKYFENGK 86 (104)
T ss_pred cEEEEEeCCC
Confidence 9999998765
No 194
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.66 E-value=0.00041 Score=57.81 Aligned_cols=88 Identities=17% Similarity=0.309 Sum_probs=61.9
Q ss_pred CCCeEEEEEEc-CCChhHHhhhHHHHHHHHHcCC--CCEEEEE-c--------------------------CCCChhHHH
Q 025648 10 SHEYVAVLFYA-SWCPFSRNFRPSFSVLSSLYSS--IPHFAIE-E--------------------------SAIRPSILS 59 (250)
Q Consensus 10 ~~~~vlV~Fya-~wC~~C~~~~p~~e~la~~~~~--~~~v~~~-d--------------------------~~~~~~l~~ 59 (250)
.+++++|.||+ .||+.|....+.+.++.++|.. ...+++. | +|...++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 46789999994 8899999999999999998873 3444431 0 112347889
Q ss_pred hhCCC------ccCeEEEE--eCceeEEEeC----CCCHHHHHHHHHHhh
Q 025648 60 KYGVH------GFPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDVT 97 (250)
Q Consensus 60 ~~~I~------~~PTi~l~--~g~~~~~~~G----~~~~~~l~~fi~~~~ 97 (250)
.||+. .+|+.+++ +|.....+.+ .++.+++++.|....
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 99985 46899999 4555554433 467777877776553
No 195
>PHA03050 glutaredoxin; Provisional
Probab=97.65 E-value=5.5e-05 Score=56.96 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=42.6
Q ss_pred EEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCC----ChhHHHhhCCCccCeEEEEeCcee
Q 025648 14 VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI----RPSILSKYGVHGFPTLFLLNSSMR 77 (250)
Q Consensus 14 vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~----~~~l~~~~~I~~~PTi~l~~g~~~ 77 (250)
-++.|..+|||+|++....|++..-..+....+.+++... ...+.+.-|.+.+|++++ +|+.+
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI-~g~~i 80 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF-GKTSI 80 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE-CCEEE
Confidence 3778999999999999998887754443333444433212 234666678899999955 66543
No 196
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.65 E-value=0.00011 Score=60.06 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=64.1
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeC
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHG 82 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G 82 (250)
...-|++.||-|.-..|+-|...++.||+.+-+..++.+ +.+..|=|+.+++|.-+||+.+| +|..+.++.|
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikv-nae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVG 155 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKV-NAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVG 155 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEE-ecccCceeeeeeeeeEeeeEEEEEcCEEEEEEee
Confidence 456799999999999999999999999999988776666 56677899999999999999999 9998888887
No 197
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.62 E-value=0.00057 Score=59.10 Aligned_cols=84 Identities=12% Similarity=0.277 Sum_probs=58.5
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCC--CEEEE-----------------E---------------------
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI--PHFAI-----------------E--------------------- 49 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~--~~v~~-----------------~--------------------- 49 (250)
+.+.+++.|..+.||+|+++.+.+.++.+.- ++ ..+-+ .
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDSG-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhcC-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 4567899999999999999988877655431 11 00100 0
Q ss_pred -----cC----CCChhHHHhhCCCccCeEEEEeC-ceeEEEeCCCCHHHHHHHHH
Q 025648 50 -----ES----AIRPSILSKYGVHGFPTLFLLNS-SMRVRYHGSRTLDSLVAFYS 94 (250)
Q Consensus 50 -----d~----~~~~~l~~~~~I~~~PTi~l~~g-~~~~~~~G~~~~~~l~~fi~ 94 (250)
+| +++.++.+++||+|+||+++-++ +.+....|..+.++|.+.+.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 00 01235788899999999999953 45567789999999988764
No 198
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.59 E-value=8e-06 Score=60.64 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=36.9
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHHH-------------------HHHHHHHhhhhHHHHhhhH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAFV-------------------LLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f~-------------------~~~~~i~~fPti~~f~~~~ 173 (250)
.+++ |||++|+.+ .|.+..+|..+. +.+++|.++||+++|.+|.
T Consensus 21 ~f~a--~wC~~C~~~--~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~ 83 (104)
T cd03000 21 DFYA--PWCGHCKKL--EPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL 83 (104)
T ss_pred EEEC--CCCHHHHhh--ChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC
Confidence 3467 999999999 999999998872 3789999999999996543
No 199
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.57 E-value=0.00065 Score=49.38 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=63.8
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-e-CceeEEEeCCCC
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-N-SSMRVRYHGSRT 85 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~-g~~~~~~~G~~~ 85 (250)
...+++++|-|+.++|. .....|.++|+.+.+...++... ++++..++++.. |++++| . ......|.|..+
T Consensus 14 ~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~~~~~y~g~~~ 86 (97)
T cd02981 14 LDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEEEPVEYDGEFT 86 (97)
T ss_pred hccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcccCCccCCCCCC
Confidence 45788999999999987 56778999999997655555543 467888888754 999999 4 356678999999
Q ss_pred HHHHHHHHHH
Q 025648 86 LDSLVAFYSD 95 (250)
Q Consensus 86 ~~~l~~fi~~ 95 (250)
.++|.+||..
T Consensus 87 ~~~l~~fi~~ 96 (97)
T cd02981 87 EESLVEFIKD 96 (97)
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 200
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.00032 Score=53.08 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=47.6
Q ss_pred CCCeEEEEEEc--------CCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCC-------ChhHHHhhCC-CccCeEEEEe
Q 025648 10 SHEYVAVLFYA--------SWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI-------RPSILSKYGV-HGFPTLFLLN 73 (250)
Q Consensus 10 ~~~~vlV~Fya--------~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~-------~~~l~~~~~I-~~~PTi~l~~ 73 (250)
+++.++|+|++ +|||.|.+..|.+.+.-+..+...++..++... +..+....++ .++||++=++
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWK 103 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEc
Confidence 45559999996 699999999999999999877654444433221 2345566677 9999999884
Q ss_pred C
Q 025648 74 S 74 (250)
Q Consensus 74 g 74 (250)
+
T Consensus 104 ~ 104 (128)
T KOG3425|consen 104 R 104 (128)
T ss_pred C
Confidence 3
No 201
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.54 E-value=0.00066 Score=56.88 Aligned_cols=33 Identities=15% Similarity=0.406 Sum_probs=28.1
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHH---HHHHHHcCC
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYSS 42 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~---e~la~~~~~ 42 (250)
.+++.+|+|+...||||.++.|.+ +.+.+.+++
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 357889999999999999999876 788888764
No 202
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.54 E-value=0.00071 Score=54.59 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=30.2
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS 42 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~ 42 (250)
..++.++.|+.+.||+|+++.+.+.++.+.+++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 678999999999999999999999999888765
No 203
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.54 E-value=0.00073 Score=52.09 Aligned_cols=89 Identities=9% Similarity=0.179 Sum_probs=67.9
Q ss_pred cccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeE-EEE-eCceeEEEeC--
Q 025648 7 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTL-FLL-NSSMRVRYHG-- 82 (250)
Q Consensus 7 ~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi-~l~-~g~~~~~~~G-- 82 (250)
....++.++|.|..+|-+.|.++...+.++++..++...+..+|.++-+++.+.|.+. -|.. ++| +++.+.---|
T Consensus 16 ~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkhm~vD~Gtg 94 (133)
T PF02966_consen 16 LSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKHMMVDFGTG 94 (133)
T ss_dssp HH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEEEEEESSSS
T ss_pred hccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeEEEEEecCC
Confidence 4567899999999999999999999999999999999999999999999999999999 7764 444 7665432222
Q ss_pred -------C-CCHHHHHHHHHHh
Q 025648 83 -------S-RTLDSLVAFYSDV 96 (250)
Q Consensus 83 -------~-~~~~~l~~fi~~~ 96 (250)
. .+.+++++-++-.
T Consensus 95 nnnKin~~~~~kqe~iDiie~i 116 (133)
T PF02966_consen 95 NNNKINWAFEDKQEFIDIIETI 116 (133)
T ss_dssp SSSSBCS--SCHHHHHHHHHHH
T ss_pred CccEEEEEcCcHHHHHHHHHHH
Confidence 1 2467776666543
No 204
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.53 E-value=8.1e-06 Score=60.71 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=37.0
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHH------------------HHHHHHHHhhhhHHHHhhhH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAF------------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f------------------~~~~~~i~~fPti~~f~~~~ 173 (250)
.+++ +||++|+.+ .|.+..+|..+ +..+|+|+++||+++|.+|.
T Consensus 21 ~F~a--~wC~~C~~~--~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~ 82 (103)
T cd02985 21 EFAL--KHSGPSVKI--YPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGE 82 (103)
T ss_pred EEEC--CCCHhHHHH--hHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCe
Confidence 3467 899999999 99999999886 12588999999999997765
No 205
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.52 E-value=0.00088 Score=52.11 Aligned_cols=75 Identities=11% Similarity=0.216 Sum_probs=61.4
Q ss_pred HhhhHHHHHHHHHcCCC-CEEEEEcCCCChhHHHhhCCC--ccCeEEEEeCce-eEE-EeCCCCHHHHHHHHHHhhCCCC
Q 025648 27 RNFRPSFSVLSSLYSSI-PHFAIEESAIRPSILSKYGVH--GFPTLFLLNSSM-RVR-YHGSRTLDSLVAFYSDVTGMNT 101 (250)
Q Consensus 27 ~~~~p~~e~la~~~~~~-~~v~~~d~~~~~~l~~~~~I~--~~PTi~l~~g~~-~~~-~~G~~~~~~l~~fi~~~~~~~~ 101 (250)
..+...+.++|+.|++. ..+..+|.+.+..+.+.|||. ++|++++++.+. .+. +.|..+.++|.+|+++.+.-+.
T Consensus 40 ~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 40 NKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 45688899999999997 788888888888899999995 599999993332 333 6689999999999999886554
No 206
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.52 E-value=0.0011 Score=50.51 Aligned_cols=90 Identities=26% Similarity=0.452 Sum_probs=60.4
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHH-HHcCC--C---CEEEEEcCC--CChhHHHhhCC--CccCeEEEE--eCc
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLS-SLYSS--I---PHFAIEESA--IRPSILSKYGV--HGFPTLFLL--NSS 75 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la-~~~~~--~---~~v~~~d~~--~~~~l~~~~~I--~~~PTi~l~--~g~ 75 (250)
....+.+||.|=... | =-.-...|.+++ +.... . ..|++-|.. ++.+|+++|+| ..+|.+++| +.+
T Consensus 18 i~kf~~~LVKFD~ay-P-yGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~ 95 (126)
T PF07912_consen 18 IPKFKYVLVKFDVAY-P-YGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKE 95 (126)
T ss_dssp GGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTT
T ss_pred eccCceEEEEEeccC-C-CcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCC
Confidence 345588999997654 2 223345788888 54433 2 233443432 57899999999 579999999 566
Q ss_pred eeEEE--eCCCCHHHHHHHHHHhhCC
Q 025648 76 MRVRY--HGSRTLDSLVAFYSDVTGM 99 (250)
Q Consensus 76 ~~~~~--~G~~~~~~l~~fi~~~~~~ 99 (250)
...+| .|..+.++|+.|+.++++.
T Consensus 96 ~pv~~p~~~~~t~~~l~~fvk~~t~~ 121 (126)
T PF07912_consen 96 EPVRYPFDGDVTADNLQRFVKSNTGL 121 (126)
T ss_dssp SEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred CCccCCccCCccHHHHHHHHHhCCCe
Confidence 88888 8899999999999998764
No 207
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=7.6e-06 Score=76.62 Aligned_cols=63 Identities=21% Similarity=0.144 Sum_probs=46.2
Q ss_pred CCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH---------------------HHHHHHHHh
Q 025648 104 LDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF---------------------VLLRLVYIF 162 (250)
Q Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f---------------------~~~~~~i~~ 162 (250)
++.++|+..+..+..-.++ .++. .|||||.++ +|+|..+|... +|..++|++
T Consensus 44 Ld~~tf~~~v~~~~~~~lV---EFy~--swCGhCr~F--APtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 44 LDVDTFNAAVFGSRKAKLV---EFYN--SWCGHCRAF--APTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred eehhhhHHHhcccchhHHH---HHHH--hhhhhhhhc--chHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 3444555444433322222 3355 799999999 99999999986 479999999
Q ss_pred hhhHHHHhhhH
Q 025648 163 LPTLLIFAQFT 173 (250)
Q Consensus 163 fPti~~f~~~~ 173 (250)
||||++|+.+.
T Consensus 117 ~Ptlryf~~~~ 127 (606)
T KOG1731|consen 117 YPTLRYFPPDS 127 (606)
T ss_pred CceeeecCCcc
Confidence 99999998764
No 208
>PHA02278 thioredoxin-like protein
Probab=97.48 E-value=1.4e-05 Score=59.68 Aligned_cols=44 Identities=9% Similarity=-0.051 Sum_probs=36.9
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHH--------------------HHHHHHHHhhhhHHHHhhhH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAF--------------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f--------------------~~~~~~i~~fPti~~f~~~~ 173 (250)
.+++ ||||+|+.| .|.++.+|..+ +..+|+|.+.||+++|.+|.
T Consensus 20 ~F~A--~WCgpCk~m--~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~ 83 (103)
T PHA02278 20 MITQ--DNCGKCEIL--KSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ 83 (103)
T ss_pred EEEC--CCCHHHHhH--HHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE
Confidence 3467 999999999 99999988652 23689999999999999876
No 209
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.47 E-value=0.00042 Score=46.02 Aligned_cols=54 Identities=13% Similarity=0.320 Sum_probs=38.2
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCC----hhHHHhhCCCccCeEEEEeCc
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGVHGFPTLFLLNSS 75 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~----~~l~~~~~I~~~PTi~l~~g~ 75 (250)
++.|..+|||+|++....|++.. ..+...|.+.. ..+.+..|..++|++++ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~------i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i-~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKG------IPYEEVDVDEDEEAREELKELSGVRTVPQVFI-DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTT------BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE-TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcC------CeeeEcccccchhHHHHHHHHcCCCccCEEEE-CCE
Confidence 57899999999999998885443 23444444444 34445559999999987 554
No 210
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.46 E-value=0.00043 Score=47.75 Aligned_cols=69 Identities=19% Similarity=0.401 Sum_probs=43.0
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 93 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi 93 (250)
++.|..+|||+|.+....+++..-.| ..+.++.......+....|...+|.+++ +|+.+ | ..++|.+|+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~i~~---~~~~v~~~~~~~~~~~~~g~~~vP~ifi-~g~~i----g--g~~~l~~~l 71 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENGISY---EEIPLGKDITGRSLRAVTGAMTVPQVFI-DGELI----G--GSDDLEKYF 71 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCc---EEEECCCChhHHHHHHHhCCCCcCeEEE-CCEEE----e--CHHHHHHHh
Confidence 67899999999999988887532111 1222221112233445568999999843 76543 3 367777765
No 211
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.46 E-value=7.8e-06 Score=65.38 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=38.0
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHH-----------------HHHHHHHHh------hhhHHHHhhhH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAF-----------------VLLRLVYIF------LPTLLIFAQFT 173 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f-----------------~~~~~~i~~------fPti~~f~~~~ 173 (250)
.+++ |||++|+.+ .|.+..+|..+ ++.+|+|.. +||+++|.+|.
T Consensus 53 ~Fya--~wC~~Ck~l--~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk 119 (152)
T cd02962 53 EFFT--TWSPECVNF--APVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGK 119 (152)
T ss_pred EEEC--CCCHHHHHH--HHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCE
Confidence 3467 999999999 99999999876 248899988 99999999876
No 212
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.43 E-value=0.001 Score=45.91 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=43.5
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhh---CCCccCeEEEEeCceeEEEeCCCCHHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKY---GVHGFPTLFLLNSSMRVRYHGSRTLDSLVA 91 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~---~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~ 91 (250)
++.|..++||+|++....+++. ++ .+...|.++++.....+ |..++|++++ +|+ ...|+.+.+.|.+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-----~i-~~~~~di~~~~~~~~~~~~~g~~~vP~v~~-~g~---~~~~G~~~~~~~~ 70 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-----GI-AFEEINIDEQPEAIDYVKAQGFRQVPVIVA-DGD---LSWSGFRPDKLKA 70 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-----CC-ceEEEECCCCHHHHHHHHHcCCcccCEEEE-CCC---cEEeccCHHHHHh
Confidence 3568899999999999888753 33 23333544555444444 8889999865 553 2445566666654
No 213
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.42 E-value=0.0012 Score=58.83 Aligned_cols=95 Identities=14% Similarity=0.251 Sum_probs=65.3
Q ss_pred CCeEEEEEEcCCChhHHhhhH-------HHHHHHHHcCC-CCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeC
Q 025648 11 HEYVAVLFYASWCPFSRNFRP-------SFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHG 82 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p-------~~e~la~~~~~-~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G 82 (250)
-+..+|+||.|-- ..+.... .++-.|+.+.. -+.++.+|..++..+++++|+...+++.+|.+..++.|.|
T Consensus 51 yd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~~IEydG 129 (383)
T PF01216_consen 51 YDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGEVIEYDG 129 (383)
T ss_dssp -SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--STTEEEEEETTEEEEE-S
T ss_pred hcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccccCcEEEEECCcEEEecC
Confidence 3467788887763 3333322 23334444433 4688889999999999999999999999998888899999
Q ss_pred CCCHHHHHHHHHHhhCCCCCCCCC
Q 025648 83 SRTLDSLVAFYSDVTGMNTASLDK 106 (250)
Q Consensus 83 ~~~~~~l~~fi~~~~~~~~~~l~~ 106 (250)
.++++.|+.||...+...+..++.
T Consensus 130 ~~saDtLVeFl~dl~edPVeiIn~ 153 (383)
T PF01216_consen 130 ERSADTLVEFLLDLLEDPVEIINN 153 (383)
T ss_dssp --SHHHHHHHHHHHHSSSEEEE-S
T ss_pred ccCHHHHHHHHHHhcccchhhhcC
Confidence 999999999999999876655543
No 214
>PRK09381 trxA thioredoxin; Provisional
Probab=97.40 E-value=1.4e-05 Score=59.69 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=46.2
Q ss_pred CCCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHHH----------------HHHHHHHhhhh
Q 025648 102 ASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPT 165 (250)
Q Consensus 102 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f~----------------~~~~~i~~fPt 165 (250)
..+++.++++.+......+.. .+++ |||++|+.+ .|.+..++..+. ..+++|+.+||
T Consensus 6 ~~~~~~~~~~~v~~~~~~vvv---~f~~--~~C~~C~~~--~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 78 (109)
T PRK09381 6 IHLTDDSFDTDVLKADGAILV---DFWA--EWCGPCKMI--APILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPT 78 (109)
T ss_pred eeeChhhHHHHHhcCCCeEEE---EEEC--CCCHHHHHH--hHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCE
Confidence 345555666433222222222 3466 899999999 999999999872 37899999999
Q ss_pred HHHHhhhH
Q 025648 166 LLIFAQFT 173 (250)
Q Consensus 166 i~~f~~~~ 173 (250)
+++|.+|.
T Consensus 79 ~~~~~~G~ 86 (109)
T PRK09381 79 LLLFKNGE 86 (109)
T ss_pred EEEEeCCe
Confidence 99998765
No 215
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.39 E-value=0.00061 Score=45.93 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=38.2
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCC----hhHHHhhCCCccCeEEEEeCceeE
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGVHGFPTLFLLNSSMRV 78 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~----~~l~~~~~I~~~PTi~l~~g~~~~ 78 (250)
++.|+++||++|++..+.+++.. + .+...|.+.+ ..+.+..+...+|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i-~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~-~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----I-EFEEIDILEDGELREELKELSGWPTVPQIFI-NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----C-cEEEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCEEEe
Confidence 57899999999999999998775 2 2223333333 33455567788998744 665443
No 216
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.39 E-value=0.00071 Score=54.78 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-e-CceeEEEeCC-CCHHHHHHHHHHhhCCCCCCC
Q 025648 28 NFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-N-SSMRVRYHGS-RTLDSLVAFYSDVTGMNTASL 104 (250)
Q Consensus 28 ~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~-g~~~~~~~G~-~~~~~l~~fi~~~~~~~~~~l 104 (250)
.+...|.++|+.+.+...++... ++++++++++.. |++++| . ++....|.|. .+.++|.+||....-+.+..+
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~ 82 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPEL 82 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEE
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccccccc
Confidence 34567999999999766666653 578999999999 999999 4 3667999998 899999999999998889999
Q ss_pred CCCCccccCCCC
Q 025648 105 DKISPDKVGKAS 116 (250)
Q Consensus 105 ~~~~~~~~~~~~ 116 (250)
++++++.+....
T Consensus 83 t~~n~~~~~~~~ 94 (184)
T PF13848_consen 83 TPENFEKLFSSP 94 (184)
T ss_dssp STTHHHHHHSTS
T ss_pred chhhHHHHhcCC
Confidence 999888886654
No 217
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.36 E-value=9.1e-06 Score=58.70 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=36.2
Q ss_pred CCCCcCCCChhhhcCchHHHHHHHHH------------------HHHHHHHHhhhhHHHHhhhH
Q 025648 128 SCPFSWARSPENLLQQETYLALATAF------------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 128 ~~~~pw~~~ck~~~~~~~~~~lA~~f------------------~~~~~~i~~fPti~~f~~~~ 173 (250)
+. +||++|+.+ .+.+..+|..+ ++.+++|.++||+++|.++.
T Consensus 23 ~~--~~C~~C~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 23 YA--PWCGHCKAL--APEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred EC--CCCHHHHhh--hHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCC
Confidence 55 899999999 99999988777 13899999999999998774
No 218
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.34 E-value=0.00079 Score=48.02 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=42.4
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcC----C----------------------------CChhHHHhhC
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES----A----------------------------IRPSILSKYG 62 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~----~----------------------------~~~~l~~~~~ 62 (250)
++.|+.+.||+|..+.+.++++.+..++...+..... . ++..+..++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999866655333322211 0 1235677899
Q ss_pred CCccCeEEEEe
Q 025648 63 VHGFPTLFLLN 73 (250)
Q Consensus 63 I~~~PTi~l~~ 73 (250)
|.++||+++.+
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999853
No 219
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.32 E-value=2.2e-05 Score=58.18 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=37.6
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHHH----------------HHHHHHHhhhhHHHHhhhH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f~----------------~~~~~i~~fPti~~f~~~~ 173 (250)
.+|+ |||++|+.+ .|.+..++..+. ..+|+|+++||+++|.+|.
T Consensus 23 ~F~a--~wC~~Ck~~--~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 23 DVYQ--EWCGPCKAV--VSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred EEEC--CcCHhHHHH--hHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCE
Confidence 4477 999999999 999999988762 3899999999999998765
No 220
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.30 E-value=0.00052 Score=50.76 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=37.2
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChh----HHHhhCCCccCeEEEEeCcee
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPS----ILSKYGVHGFPTLFLLNSSMR 77 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~----l~~~~~I~~~PTi~l~~g~~~ 77 (250)
++.|..+|||+|++....+++..-.| ..+.++..+...+ +.+..|.+.+|++++ +|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~---~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi-~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNP---AVHEIDKEPAGKDIENALSRLGCSPAVPAVFV-GGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCC---EEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE-CCEEE
Confidence 67799999999999998887663332 2333332222222 333446789999843 77443
No 221
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.26 E-value=0.0014 Score=46.57 Aligned_cols=77 Identities=13% Similarity=0.224 Sum_probs=59.6
Q ss_pred EEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeC----ceeEEEeCCCCHHHH
Q 025648 14 VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNS----SMRVRYHGSRTLDSL 89 (250)
Q Consensus 14 vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g----~~~~~~~G~~~~~~l 89 (250)
.+++|..+.|+-|......++++....+ ..+..+|.+.++++..+|+. .+|.+.+- + .......+..+.+.|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~-~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPVLHID-GIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSEEEET-T-GGGCTSEEEESSB-HHHH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCEEEEc-CcccccccceeCCCCCHHHH
Confidence 3788999999999999999998766554 56777788899999999995 79997763 3 124566778899999
Q ss_pred HHHHH
Q 025648 90 VAFYS 94 (250)
Q Consensus 90 ~~fi~ 94 (250)
.++|+
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99875
No 222
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.26 E-value=4e-05 Score=57.91 Aligned_cols=43 Identities=21% Similarity=0.124 Sum_probs=37.9
Q ss_pred CCCCCcCCCChhhhcCchHHHHHHHHH--------------HHHHHHHHhhhhHHHHhhhH
Q 025648 127 ESCPFSWARSPENLLQQETYLALATAF--------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 127 ~~~~~pw~~~ck~~~~~~~~~~lA~~f--------------~~~~~~i~~fPti~~f~~~~ 173 (250)
+++ |||++|+.+ .|.++.+|..| +..+++|.++||+++|.+|.
T Consensus 31 F~a--~~c~~C~~l--~~~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~~~Pt~~~f~~G~ 87 (113)
T cd02957 31 FYE--PGFPRCKIL--DSHLEELAAKYPETKFVKINAEKAFLVNYLDIKVLPTLLVYKNGE 87 (113)
T ss_pred EeC--CCCCcHHHH--HHHHHHHHHHCCCcEEEEEEchhhHHHHhcCCCcCCEEEEEECCE
Confidence 466 999999999 99999999876 24689999999999999886
No 223
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.22 E-value=0.0022 Score=48.45 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=57.6
Q ss_pred hhHHhhhHHHHHHHHHcC-CCCEEEEEcCCCChhHHHhhCCCc----cCeEEEEe-CceeEEEeCCC-CHHHHHHHHHHh
Q 025648 24 PFSRNFRPSFSVLSSLYS-SIPHFAIEESAIRPSILSKYGVHG----FPTLFLLN-SSMRVRYHGSR-TLDSLVAFYSDV 96 (250)
Q Consensus 24 ~~C~~~~p~~e~la~~~~-~~~~v~~~d~~~~~~l~~~~~I~~----~PTi~l~~-g~~~~~~~G~~-~~~~l~~fi~~~ 96 (250)
..-..+...+.++|+.|+ +.+.+..+|.++.....+.||+.. +|++.+++ ........+.. +.++|.+|+++.
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 445678999999999999 677777878777777889999984 99999993 22233345677 999999999875
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=4.1e-05 Score=66.76 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=52.0
Q ss_pred CCCCCCCCccccCCCCCcc--cccCCCCCCCCCcCCCChhhhcCchHHHHHHHHHH----------------HHHHHHHh
Q 025648 101 TASLDKISPDKVGKASNHE--KHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIF 162 (250)
Q Consensus 101 ~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f~----------------~~~~~i~~ 162 (250)
+.++|..||++.+...... +++ .+|+ |||++|+.+ .|..+.++..+. ...|||.+
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV---~fWa--p~~~~c~qL--~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqs 97 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLV---DFWA--PWCGPCKQL--TPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQS 97 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEE---EecC--CCCchHHHH--HHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCc
Confidence 4567778888665443322 334 3488 999999999 999999999983 39999999
Q ss_pred hhhHHHHhhhH
Q 025648 163 LPTLLIFAQFT 173 (250)
Q Consensus 163 fPti~~f~~~~ 173 (250)
-||+..|..|.
T Consensus 98 IPtV~af~dGq 108 (304)
T COG3118 98 IPTVYAFKDGQ 108 (304)
T ss_pred CCeEEEeeCCc
Confidence 99999999875
No 225
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.15 E-value=0.0035 Score=47.32 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=66.0
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHH---cCCCCEEEEEcCCCChhHHHhhCCCc--cCeEEEEeCce--eEE-Ee
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSL---YSSIPHFAIEESAIRPSILSKYGVHG--FPTLFLLNSSM--RVR-YH 81 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~---~~~~~~v~~~d~~~~~~l~~~~~I~~--~PTi~l~~g~~--~~~-~~ 81 (250)
.+.+..++|+.+ ..-..+.+.+.++|+. +++...+..+|.+......+.+|+.. +|.+.+.+... ... +.
T Consensus 15 ~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~ 92 (111)
T cd03072 15 EGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFE 92 (111)
T ss_pred CCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCc
Confidence 344555666632 2347788999999999 99977777778877777999999997 99999993233 333 45
Q ss_pred CCCCHHHHHHHHHHhhC
Q 025648 82 GSRTLDSLVAFYSDVTG 98 (250)
Q Consensus 82 G~~~~~~l~~fi~~~~~ 98 (250)
+..+.++|.+|+++...
T Consensus 93 ~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 93 DVYVPGKLKQFVLDLHS 109 (111)
T ss_pred cccCHHHHHHHHHHHhc
Confidence 78899999999998764
No 226
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=4.7e-05 Score=57.13 Aligned_cols=43 Identities=14% Similarity=0.266 Sum_probs=38.2
Q ss_pred CCCCCcCCCChhhhcCchHHHHHHHHH---------------HHHHHHHHhhhhHHHHhhhH
Q 025648 127 ESCPFSWARSPENLLQQETYLALATAF---------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 127 ~~~~~pw~~~ck~~~~~~~~~~lA~~f---------------~~~~~~i~~fPti~~f~~~~ 173 (250)
+++ +|||+|+.| .|.+..||..| ++..++|..-||++++.+|.
T Consensus 28 F~a--~wCgPCk~i--~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~ 85 (106)
T KOG0907|consen 28 FYA--TWCGPCKAI--APKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE 85 (106)
T ss_pred EEC--CCCcchhhh--hhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCE
Confidence 366 899999999 99999999987 35899999999999997765
No 227
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.09 E-value=8.3e-05 Score=56.34 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=38.1
Q ss_pred CCCCCcCCCChhhhcCchHHHHHHHHH---------------HHHHHHHHhhhhHHHHhhhH
Q 025648 127 ESCPFSWARSPENLLQQETYLALATAF---------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 127 ~~~~~pw~~~ck~~~~~~~~~~lA~~f---------------~~~~~~i~~fPti~~f~~~~ 173 (250)
+++ |||++|+.+ .|.++.+|..+ +..+|+|...||+++|.+|.
T Consensus 29 f~a--~~c~~C~~~--~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~ 86 (113)
T cd02989 29 FYH--PEFFRCKIM--DKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGK 86 (113)
T ss_pred EEC--CCCccHHHH--HHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEECCE
Confidence 366 999999999 99999999876 24899999999999999886
No 228
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0023 Score=56.16 Aligned_cols=92 Identities=15% Similarity=0.277 Sum_probs=71.6
Q ss_pred CCeEEEEEEcC----CChhHHhhhHHHHHHHHHcCC--------CCEEEEEcCCCChhHHHhhCCCccCeEEEE-e--Cc
Q 025648 11 HEYVAVLFYAS----WCPFSRNFRPSFSVLSSLYSS--------IPHFAIEESAIRPSILSKYGVHGFPTLFLL-N--SS 75 (250)
Q Consensus 11 ~~~vlV~Fya~----wC~~C~~~~p~~e~la~~~~~--------~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~--g~ 75 (250)
+-.++|+|.|. .|.-|+....+|.-++..+.. ..++..+|.++.+++.+++++...|++++| . |.
T Consensus 60 Nys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n 139 (331)
T KOG2603|consen 60 NYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLFSPAKGN 139 (331)
T ss_pred CeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcccCCCeEEEeCCCccc
Confidence 44578888875 499999999999999987531 458888999999999999999999999999 2 21
Q ss_pred --eeEE---EeCCCCHHHHHHHHHHhhCCCCC
Q 025648 76 --MRVR---YHGSRTLDSLVAFYSDVTGMNTA 102 (250)
Q Consensus 76 --~~~~---~~G~~~~~~l~~fi~~~~~~~~~ 102 (250)
.... +.-+..+|++.+|+++.+...+.
T Consensus 140 ~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 140 KKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR 171 (331)
T ss_pred cccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence 1122 22234599999999999877654
No 229
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.06 E-value=0.0035 Score=43.17 Aligned_cols=55 Identities=11% Similarity=0.341 Sum_probs=36.6
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCCh----hHHHhhCCC-ccCeEEEEeCce
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVH-GFPTLFLLNSSM 76 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~----~l~~~~~I~-~~PTi~l~~g~~ 76 (250)
++.|..+|||+|.+....+++. ++. +...+.+.++ .+.+..|.. ++|++++ +|+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~-~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i-~g~~ 61 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVD-YEEIDVDGDPALREEMINRSGGRRTVPQIFI-GDVH 61 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCc-EEEEECCCCHHHHHHHHHHhCCCCccCEEEE-CCEE
Confidence 5689999999999999888864 332 2333444433 344456777 8998854 6644
No 230
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.06 E-value=0.0017 Score=48.70 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=56.9
Q ss_pred EEEEEEcCCChhHHh---hhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeCCCCHHH
Q 025648 14 VAVLFYASWCPFSRN---FRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLDS 88 (250)
Q Consensus 14 vlV~Fya~wC~~C~~---~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G~~~~~~ 88 (250)
..|.|++..|.-+.+ ..=++-++.+.+++....+++..+.+..|..+||+..+|+++++ +|+.+....|-++-++
T Consensus 28 ~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 28 DAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp CEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEEEEEEESSSTHHH
T ss_pred cEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECCEEEEEecCeecccc
Confidence 355666666554444 44478888899999877777776678899999999999999999 8888888888877554
No 231
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.05 E-value=0.0013 Score=46.10 Aligned_cols=55 Identities=15% Similarity=0.407 Sum_probs=36.6
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCCh----hHHHhhCCCccCeEEEEeCce
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSSM 76 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~----~l~~~~~I~~~PTi~l~~g~~ 76 (250)
++.|..+|||+|.+....+++..- .+...|.+.++ ++.+..|..++|++++ +|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i------~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i-~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGV------TFTEIRVDGDPALRDEMMQRSGRRTVPQIFI-GDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCC------CcEEEEecCCHHHHHHHHHHhCCCCcCEEEE-CCEE
Confidence 467889999999999999986432 22222333333 3445558889999844 6653
No 232
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.05 E-value=0.0022 Score=45.56 Aligned_cols=72 Identities=10% Similarity=0.133 Sum_probs=48.3
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhH---HHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSI---LSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVA 91 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l---~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~ 91 (250)
++.|..+||++|++.+..+++. ++. +...|.+.+++. ....|...+|++++ ++. ..++.+.+.|.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-----gI~-~~~idi~~~~~~~~~~~~~g~~~vPvv~i-~~~----~~~Gf~~~~l~~ 71 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-----GFD-FEMINVDRVPEAAETLRAQGFRQLPVVIA-GDL----SWSGFRPDMINR 71 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-----CCc-eEEEECCCCHHHHHHHHHcCCCCcCEEEE-CCE----EEecCCHHHHHH
Confidence 5678999999999998888652 333 333355444442 23457889999965 442 234677888888
Q ss_pred HHHHhh
Q 025648 92 FYSDVT 97 (250)
Q Consensus 92 fi~~~~ 97 (250)
.+....
T Consensus 72 ~~~~~~ 77 (81)
T PRK10329 72 LHPAPH 77 (81)
T ss_pred HHHhhh
Confidence 876654
No 233
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.00 E-value=0.00028 Score=61.66 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=46.2
Q ss_pred CCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHHH---------------------HHHHHHHhh
Q 025648 105 DKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV---------------------LLRLVYIFL 163 (250)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f~---------------------~~~~~i~~f 163 (250)
+.+|++.+... ...+++ .+++ .||+-.+.+ .|.++..|..|. ..||.|.+|
T Consensus 2 t~~N~~~il~s-~elvfv---~FyA--dWCrFSq~L--~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~Ky 73 (375)
T KOG0912|consen 2 TSENIDSILDS-NELVFV---NFYA--DWCRFSQML--KPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKY 73 (375)
T ss_pred ccccHHHhhcc-ceEEee---eeeh--hhchHHHHH--hHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccC
Confidence 34556655444 222333 3456 899999999 999999999884 399999999
Q ss_pred hhHHHHhhhH
Q 025648 164 PTLLIFAQFT 173 (250)
Q Consensus 164 Pti~~f~~~~ 173 (250)
||+++|.+|.
T Consensus 74 PTlKvfrnG~ 83 (375)
T KOG0912|consen 74 PTLKVFRNGE 83 (375)
T ss_pred ceeeeeeccc
Confidence 9999999987
No 234
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.86 E-value=8.9e-05 Score=58.52 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=36.5
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHHH------------------HHHHHHHhhhhHHHHh-hhH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAFV------------------LLRLVYIFLPTLLIFA-QFT 173 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f~------------------~~~~~i~~fPti~~f~-~~~ 173 (250)
.+|+ +||++|+.+ .|.+..++..|. ..+|+|.++||+++|. +|.
T Consensus 26 ~F~A--~WC~~C~~~--~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 26 EFYA--DWCTVCQEM--APDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred EEEC--CcCHHHHHh--HHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 4477 899999999 999999988762 3789999999999995 444
No 235
>PRK10996 thioredoxin 2; Provisional
Probab=96.85 E-value=7.6e-05 Score=58.66 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=37.0
Q ss_pred CCCCCcCCCChhhhcCchHHHHHHHHH----------------HHHHHHHHhhhhHHHHhhhH
Q 025648 127 ESCPFSWARSPENLLQQETYLALATAF----------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 127 ~~~~~pw~~~ck~~~~~~~~~~lA~~f----------------~~~~~~i~~fPti~~f~~~~ 173 (250)
+++ +||++|+.+ .|.+..++..+ +..+|+|.++||+++|.+|.
T Consensus 59 F~a--~wC~~C~~~--~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~ 117 (139)
T PRK10996 59 FWA--PWCGPCRNF--APIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQ 117 (139)
T ss_pred EEC--CCCHHHHHH--HHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCE
Confidence 466 999999999 99999998876 24899999999999998765
No 236
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.84 E-value=0.00018 Score=52.23 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=36.9
Q ss_pred CCCCCcCCCChhhhcCchHHHHHHHHH----------------HHHHHHHHhhhhHHHHhhhH
Q 025648 127 ESCPFSWARSPENLLQQETYLALATAF----------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 127 ~~~~~pw~~~ck~~~~~~~~~~lA~~f----------------~~~~~~i~~fPti~~f~~~~ 173 (250)
+++ |||++|+.+ .|.++.++..+ ++.+|+|.++||+++|.+|.
T Consensus 21 f~~--~~C~~C~~~--~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 21 FWA--PWAEPCKQM--NQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred EEC--CCCHHHHHH--hHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 356 999999999 99999999873 34899999999999998765
No 237
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.83 E-value=0.00018 Score=53.22 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=31.0
Q ss_pred CCCCCcCCCChhhhcCchHH---HHHHHHH--------------------HHHHHHHHhhhhHHHHhh
Q 025648 127 ESCPFSWARSPENLLQQETY---LALATAF--------------------VLLRLVYIFLPTLLIFAQ 171 (250)
Q Consensus 127 ~~~~~pw~~~ck~~~~~~~~---~~lA~~f--------------------~~~~~~i~~fPti~~f~~ 171 (250)
+++ |||++|+.+ .+.+ ..++..+ +..+++|.++||+++|.+
T Consensus 18 f~a--~wC~~C~~~--~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 18 FTA--DWCVTCKVN--EKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred EEc--chhHHHHHH--HHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 356 999999999 7665 3455443 226899999999999985
No 238
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.82 E-value=0.0062 Score=42.01 Aligned_cols=54 Identities=17% Similarity=0.296 Sum_probs=37.7
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCCh----hHHHhhCCCccCeEEEEeCc
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSS 75 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~----~l~~~~~I~~~PTi~l~~g~ 75 (250)
++.|..+||++|++....+++. ++. +...|.+.++ ++.+..+-..+|++++ +|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~-~~~~di~~~~~~~~el~~~~g~~~vP~v~i-~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLP-YVEINIDIFPERKAELEERTGSSVVPQIFF-NEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCc-eEEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCE
Confidence 5789999999999999888863 222 2333444444 4666668889999955 664
No 239
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0048 Score=43.73 Aligned_cols=69 Identities=14% Similarity=0.375 Sum_probs=40.9
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCC--CChhHHHhh-CCCccCeEEEEeCceeEEEeCCCCHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA--IRPSILSKY-GVHGFPTLFLLNSSMRVRYHGSRTLDSLV 90 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~--~~~~l~~~~-~I~~~PTi~l~~g~~~~~~~G~~~~~~l~ 90 (250)
++.|..++||+|++....+++..-.| ..+.+++.. +..+...+- |.+++|+|++ +++. .-|..+.+++.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~---~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i-~~~~---igg~~d~~~~~ 74 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDY---EEIDVDDDEPEEAREMVKRGKGQRTVPQIFI-GGKH---VGGCDDLDALE 74 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCc---EEEEecCCcHHHHHHHHHHhCCCCCcCEEEE-CCEE---EeCcccHHHHH
Confidence 57789999999999998888432222 222222222 222444444 7899999987 5542 22334555543
No 240
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=96.77 E-value=0.00011 Score=53.32 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=36.1
Q ss_pred CCCCcCCCChhhhcCchHHHHHHHHHH----------------HHHHHHHhhhhHHHHhhhH
Q 025648 128 SCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 128 ~~~~pw~~~ck~~~~~~~~~~lA~~f~----------------~~~~~i~~fPti~~f~~~~ 173 (250)
+. |||+.|+.+ .|.+..++..+- +.+|+|..+||+++|..|.
T Consensus 22 ~~--~~C~~C~~~--~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 22 WA--PWCGPCKMI--APILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EC--CCCHHHHHh--CHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 55 899999999 999999987762 4899999999999997655
No 241
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.75 E-value=7e-05 Score=61.30 Aligned_cols=44 Identities=18% Similarity=0.113 Sum_probs=38.3
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHH--------------HHHHHHHHhhhhHHHHhhhH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAF--------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f--------------~~~~~~i~~fPti~~f~~~~ 173 (250)
.+|+ |||++|+.| .|.+..||..| +..+|+|...||+++|.+|.
T Consensus 89 ~Fya--~wc~~Ck~m--~~~l~~LA~~~~~vkF~kVd~d~~~l~~~f~v~~vPTlllyk~G~ 146 (175)
T cd02987 89 HIYE--PGIPGCAAL--NSSLLCLAAEYPAVKFCKIRASATGASDEFDTDALPALLVYKGGE 146 (175)
T ss_pred EEEC--CCCchHHHH--HHHHHHHHHHCCCeEEEEEeccchhhHHhCCCCCCCEEEEEECCE
Confidence 3467 999999999 99999999876 24789999999999999886
No 242
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.00018 Score=61.24 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=45.3
Q ss_pred cCCCChhhhcCchHHHHHHHHHHH---------------HHHHHHhhhhHHHHhhhHHHHHHHhhcccccccchHHHH
Q 025648 132 SWARSPENLLQQETYLALATAFVL---------------LRLVYIFLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTYL 194 (250)
Q Consensus 132 pw~~~ck~~~~~~~~~~lA~~f~~---------------~~~~i~~fPti~~f~~~~~~~~~~~~~~~~~~~~~~~y~ 194 (250)
.|||+|+.+ +|.+..||..|.. ..+||..-||.++|.+|.-...++-.+...+.++..+|.
T Consensus 31 ~wCGPCk~I--aP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~kid~~qGAd~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 31 SWCGPCKRI--APIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVKIDQIQGADASGLEEKVAKYA 106 (288)
T ss_pred cccchHHhh--hhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEEecCeEeeeecCCCHHHHHHHHHHHh
Confidence 899999999 9999999999832 788999999999999886433333333333444444444
No 243
>PTZ00051 thioredoxin; Provisional
Probab=96.68 E-value=0.00021 Score=52.02 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=36.9
Q ss_pred CCCCCcCCCChhhhcCchHHHHHHHHH---------------HHHHHHHHhhhhHHHHhhhH
Q 025648 127 ESCPFSWARSPENLLQQETYLALATAF---------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 127 ~~~~~pw~~~ck~~~~~~~~~~lA~~f---------------~~~~~~i~~fPti~~f~~~~ 173 (250)
+++ +||++|..+ .|.+..++..+ +..+|+|+++||+++|.+|.
T Consensus 25 f~~--~~C~~C~~~--~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 25 FYA--EWCGPCKRI--APFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGS 82 (98)
T ss_pred EEC--CCCHHHHHH--hHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCe
Confidence 366 899999999 99999998876 24899999999999998765
No 244
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=96.67 E-value=0.00024 Score=53.83 Aligned_cols=44 Identities=7% Similarity=0.002 Sum_probs=37.8
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHH----------------HHHHHHHHhhhhHHHHhhhH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAF----------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f----------------~~~~~~i~~fPti~~f~~~~ 173 (250)
.+++ +||++|+.| +|.+.++|..| +...|+|+.-||.++|.+|.
T Consensus 20 dF~a--~WC~pCk~m--dp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 20 RFGR--DEDAVCLQL--DDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred EEeC--CCChhHHHH--HHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 3466 899999999 99999999876 24899999999999888775
No 245
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.66 E-value=0.00012 Score=60.76 Aligned_cols=43 Identities=19% Similarity=0.076 Sum_probs=38.2
Q ss_pred CCCCCcCCCChhhhcCchHHHHHHHHHH------------HHHHHHHhhhhHHHHhhhH
Q 025648 127 ESCPFSWARSPENLLQQETYLALATAFV------------LLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 127 ~~~~~pw~~~ck~~~~~~~~~~lA~~f~------------~~~~~i~~fPti~~f~~~~ 173 (250)
+|+ |||++|+.| .|.+..||..|. ..+|+|...||+++|.+|.
T Consensus 109 Fya--~wc~~C~~m--~~~l~~LA~k~~~vkFvkI~ad~~~~~~~i~~lPTlliyk~G~ 163 (192)
T cd02988 109 LYK--DGIPLCRLL--NQHLSELARKFPDTKFVKIISTQCIPNYPDKNLPTILVYRNGD 163 (192)
T ss_pred EEC--CCCchHHHH--HHHHHHHHHHCCCCEEEEEEhHHhHhhCCCCCCCEEEEEECCE
Confidence 466 999999999 999999999872 3789999999999999987
No 246
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.48 E-value=0.00054 Score=51.83 Aligned_cols=40 Identities=10% Similarity=-0.073 Sum_probs=34.9
Q ss_pred cCCCChhhhcCchHHHHHHHHH---------------HHHHHHHHhhhhHHHHhhhH
Q 025648 132 SWARSPENLLQQETYLALATAF---------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 132 pw~~~ck~~~~~~~~~~lA~~f---------------~~~~~~i~~fPti~~f~~~~ 173 (250)
+||++|+.+ .|.+..+|..+ +..+|+|...||+++|.+|.
T Consensus 32 ~wC~~C~~~--~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~ 86 (113)
T cd02975 32 EGCQYCEVT--KQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGG 86 (113)
T ss_pred CCCCChHHH--HHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCe
Confidence 899999999 99999998764 23889999999999998764
No 247
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.45 E-value=0.011 Score=56.45 Aligned_cols=139 Identities=10% Similarity=0.080 Sum_probs=88.1
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCc-eeEEEeCCCCHHH
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSS-MRVRYHGSRTLDS 88 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~-~~~~~~G~~~~~~ 88 (250)
.++|-+.++.+.|..|..+...++++++.-+.+ .+...+.+ ...|++.+. +|+ .-.+|.|--.-.+
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i-~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 85 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASLSDKI-TVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHE 85 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHhCCce-EEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHH
Confidence 455555555658999999999999999887543 33332211 347999888 443 3589999887788
Q ss_pred HHHHHHHhhCCC--CCCCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH-------------
Q 025648 89 LVAFYSDVTGMN--TASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF------------- 153 (250)
Q Consensus 89 l~~fi~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f------------- 153 (250)
+..||..++... ...++++..+.+-..+... .+..+.. |.|..|.+. ......+|..-
T Consensus 86 f~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~---~i~~fv~--~~Cp~Cp~~--v~~~~~~a~~~~~i~~~~id~~~~ 158 (517)
T PRK15317 86 FTSLVLALLQVGGHPPKLDQEVIEQIKALDGDF---HFETYVS--LSCHNCPDV--VQALNLMAVLNPNITHTMIDGALF 158 (517)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCe---EEEEEEc--CCCCCcHHH--HHHHHHHHHhCCCceEEEEEchhC
Confidence 888887765432 3345554444443332211 1111222 778888877 66666666541
Q ss_pred --HHHHHHHHhhhhHHH
Q 025648 154 --VLLRLVYIFLPTLLI 168 (250)
Q Consensus 154 --~~~~~~i~~fPti~~ 168 (250)
+..+|+|...|++.+
T Consensus 159 ~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 159 QDEVEARNIMAVPTVFL 175 (517)
T ss_pred HhHHHhcCCcccCEEEE
Confidence 238999999999853
No 248
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.35 E-value=0.015 Score=47.50 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=22.8
Q ss_pred EEEcCCChhHHhhhHHHHHHHHHcCCCC
Q 025648 17 LFYASWCPFSRNFRPSFSVLSSLYSSIP 44 (250)
Q Consensus 17 ~Fya~wC~~C~~~~p~~e~la~~~~~~~ 44 (250)
+|..|.|+.|-.+.|.+.++...|++.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i 29 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKI 29 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcE
Confidence 6899999999999999999999998743
No 249
>PHA02125 thioredoxin-like protein
Probab=96.34 E-value=0.00052 Score=47.90 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=28.6
Q ss_pred cCCCChhhhcCchHHHHHHHHH----------HHHHHHHHhhhhHH
Q 025648 132 SWARSPENLLQQETYLALATAF----------VLLRLVYIFLPTLL 167 (250)
Q Consensus 132 pw~~~ck~~~~~~~~~~lA~~f----------~~~~~~i~~fPti~ 167 (250)
|||++|+.+ .|.+..++..| +..+|+|+++||++
T Consensus 8 ~wC~~Ck~~--~~~l~~~~~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 8 EWCANCKMV--KPMLANVEYTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred CCCHhHHHH--HHHHHHHhheEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 999999999 99888776554 23889999999997
No 250
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.30 E-value=0.035 Score=41.46 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=53.7
Q ss_pred cccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCC----hhHHHhhCCC-ccCeEEEE-eCceeEEE
Q 025648 7 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGVH-GFPTLFLL-NSSMRVRY 80 (250)
Q Consensus 7 ~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~----~~l~~~~~I~-~~PTi~l~-~g~~~~~~ 80 (250)
....+++++|+=.++.||-+......|++..+..++...+...+.-+. ..++++|||. .-|.++++ +|+.+..-
T Consensus 15 ~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~~a 94 (105)
T PF11009_consen 15 EESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVWHA 94 (105)
T ss_dssp HH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEEEEE
T ss_pred HhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEEEC
Confidence 344578888888899999999999999999998887344444444333 4688999986 78999999 77776544
Q ss_pred e-CCCCHHHH
Q 025648 81 H-GSRTLDSL 89 (250)
Q Consensus 81 ~-G~~~~~~l 89 (250)
. ...+.++|
T Consensus 95 SH~~It~~~l 104 (105)
T PF11009_consen 95 SHWDITAEAL 104 (105)
T ss_dssp EGGG-SHHHH
T ss_pred ccccCCHHhc
Confidence 3 45666665
No 251
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=96.19 E-value=0.00065 Score=53.60 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=35.5
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHH----------------HHHHHHHHhhhhHH-HHhhhH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAF----------------VLLRLVYIFLPTLL-IFAQFT 173 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f----------------~~~~~~i~~fPti~-~f~~~~ 173 (250)
.+++ +||++|+.| .|.+..+|..+ +...|+|++-||++ +|.+|.
T Consensus 29 dF~A--~WCgpCk~m--~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 29 RFGH--DWDETCMQM--DEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEC--CCChhHHHH--HHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 4467 899999999 99999999876 24899999777777 666653
No 252
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.18 E-value=0.024 Score=46.88 Aligned_cols=87 Identities=16% Similarity=0.327 Sum_probs=65.8
Q ss_pred cccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEeC---
Q 025648 7 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHG--- 82 (250)
Q Consensus 7 ~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~G--- 82 (250)
....+-.|+|..|...=+-|.-+...++.++..|+.+.+|.+...+.- .-|-=...|||++| .|.....+.|
T Consensus 107 ~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cI----pNYPe~nlPTl~VY~~G~lk~q~igll~ 182 (240)
T KOG3170|consen 107 KASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCI----PNYPESNLPTLLVYHHGALKKQMIGLLE 182 (240)
T ss_pred hccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccccc----CCCcccCCCeEEEeecchHHhheehhhh
Confidence 344566789999999999999999999999999999988887643322 22444678999999 7776555554
Q ss_pred ----CCCHHHHHHHHHHhh
Q 025648 83 ----SRTLDSLVAFYSDVT 97 (250)
Q Consensus 83 ----~~~~~~l~~fi~~~~ 97 (250)
..+.+++..++-+.-
T Consensus 183 lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 183 LGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred hcCCcCCHHHHHHHHHhcc
Confidence 236788887777653
No 253
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.04 E-value=0.0013 Score=46.08 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=30.5
Q ss_pred cCCCChhhhcCchHHHHHHHHHH----------------HHHHHHHhhhhHHH
Q 025648 132 SWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLI 168 (250)
Q Consensus 132 pw~~~ck~~~~~~~~~~lA~~f~----------------~~~~~i~~fPti~~ 168 (250)
|||++|+.+ .|.+..++..+- ..++++.+.||+++
T Consensus 9 ~~C~~C~~~--~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~ 59 (82)
T TIGR00411 9 PTCPYCPAA--KRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI 59 (82)
T ss_pred CCCcchHHH--HHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE
Confidence 999999999 999999887762 38899999999975
No 254
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=95.98 E-value=0.037 Score=40.82 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=66.8
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCC--ChhHHHhhCCC----ccCeE-EEE-eCceeEEEe
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI--RPSILSKYGVH----GFPTL-FLL-NSSMRVRYH 81 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~--~~~l~~~~~I~----~~PTi-~l~-~g~~~~~~~ 81 (250)
..+-|+|.|..+-= .-......+.++|+...|.-.+..+||.. .+.||+++.|. --|.. .-| +|.-...|.
T Consensus 18 Tr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdYd 96 (112)
T cd03067 18 TRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEYN 96 (112)
T ss_pred hcCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCCcccccc
Confidence 34567787776643 34444558999999999988888889976 67899999998 55544 444 888889999
Q ss_pred CCCCHHHHHHHHHH
Q 025648 82 GSRTLDSLVAFYSD 95 (250)
Q Consensus 82 G~~~~~~l~~fi~~ 95 (250)
-..+..+|+.|+.+
T Consensus 97 R~~t~kSmv~FlrD 110 (112)
T cd03067 97 RQLTFKSMVAFLRD 110 (112)
T ss_pred chhhHHHHHHHhhC
Confidence 99999999999875
No 255
>PRK10638 glutaredoxin 3; Provisional
Probab=95.86 E-value=0.0099 Score=42.13 Aligned_cols=56 Identities=11% Similarity=0.277 Sum_probs=36.9
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCCh----hHHHhhCCCccCeEEEEeCcee
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSSMR 77 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~----~l~~~~~I~~~PTi~l~~g~~~ 77 (250)
++.|..+||++|++....+++..-.| ...+.+.++ ++.+..|...+|++++ +|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y------~~~dv~~~~~~~~~l~~~~g~~~vP~i~~-~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSF------QEIPIDGDAAKREEMIKRSGRTTVPQIFI-DAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCc------EEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCEEE
Confidence 56788999999999998888643222 223333333 4556668889998844 66433
No 256
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.78 E-value=0.005 Score=44.54 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=32.1
Q ss_pred CCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCC----hhHHHhhCCCccCeEEEEeCce
Q 025648 21 SWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGVHGFPTLFLLNSSM 76 (250)
Q Consensus 21 ~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~----~~l~~~~~I~~~PTi~l~~g~~ 76 (250)
||||+|++....+++..-.| ...|.+.+ ..+.+..|-..+|++++ +|+.
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y------~~idv~~~~~~~~~l~~~~g~~tvP~vfi-~g~~ 73 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDF------GTFDILEDEEVRQGLKEYSNWPTFPQLYV-NGEL 73 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCe------EEEEcCCCHHHHHHHHHHhCCCCCCEEEE-CCEE
Confidence 79999999998888764222 22232233 34555668889999844 6653
No 257
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=95.73 E-value=0.00062 Score=51.89 Aligned_cols=44 Identities=9% Similarity=0.030 Sum_probs=32.8
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHHH-----------------HHHHHHHh--hhhHHHHh-hhH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAFV-----------------LLRLVYIF--LPTLLIFA-QFT 173 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f~-----------------~~~~~i~~--fPti~~f~-~~~ 173 (250)
.+++ +||++|+.+ .|.+...+.... ..+|++.+ +||+++|. +|.
T Consensus 25 ~F~a--~WC~~C~~~--~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 25 LIHK--TWCGACKAL--KPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred EEeC--CcCHHHHHH--HHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC
Confidence 3466 899999999 888887655431 26777876 99999995 655
No 258
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.13 Score=41.28 Aligned_cols=87 Identities=18% Similarity=0.288 Sum_probs=60.8
Q ss_pred CCCeEEEEEE-cCCChhHHhhhHHHHHHHHHcCC--CCEEEEE--------------------cCCCChhHHHhhCCCc-
Q 025648 10 SHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE--------------------ESAIRPSILSKYGVHG- 65 (250)
Q Consensus 10 ~~~~vlV~Fy-a~wC~~C~~~~p~~e~la~~~~~--~~~v~~~--------------------d~~~~~~l~~~~~I~~- 65 (250)
.+++|+++|| ..++|-|...+-.|++...+|.. ..++++- -+|....+++.|||..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~ 108 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGE 108 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccc
Confidence 4568889999 78899999999999998888765 4455541 1234567899999844
Q ss_pred -----------cCeEEEE--eCceeEEEeCCC---CHHHHHHHHHHh
Q 025648 66 -----------FPTLFLL--NSSMRVRYHGSR---TLDSLVAFYSDV 96 (250)
Q Consensus 66 -----------~PTi~l~--~g~~~~~~~G~~---~~~~l~~fi~~~ 96 (250)
.++.+++ +|.....+.... ..+++.+.+.+.
T Consensus 109 k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 109 KKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred cccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 4667777 577776664432 456777666654
No 259
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.54 E-value=0.052 Score=51.72 Aligned_cols=140 Identities=11% Similarity=0.132 Sum_probs=84.6
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCc-eeEEEeCCCCHHH
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSS-MRVRYHGSRTLDS 88 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~-~~~~~~G~~~~~~ 88 (250)
.++|-+.++.+.|..|..+...++++++.-+.+. +...+.+ ....|++.+. +|+ .-.+|.|--.-.+
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~-~~~~~~~----------~~~~p~~~~~~~~~~~~i~f~g~P~g~E 86 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLSDKIS-LTQNTAD----------TLRKPSFTILRDGADTGIRFAGIPGGHE 86 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeE-EEEecCC----------cCCCCeEEEecCCcccceEEEecCCcHH
Confidence 3455454444479999999999999998875533 3332221 1356999888 544 4589999777777
Q ss_pred HHHHHHHhhCCC--CCCCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH-------------
Q 025648 89 LVAFYSDVTGMN--TASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF------------- 153 (250)
Q Consensus 89 l~~fi~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f------------- 153 (250)
+..||...+... ...++++..+.+...+.......|.. |-|..|... ......+|..-
T Consensus 87 f~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~-----~~Cp~Cp~~--v~~~~~~a~~~p~i~~~~id~~~~ 159 (515)
T TIGR03140 87 FTSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVS-----LTCQNCPDV--VQALNQMALLNPNISHTMIDGALF 159 (515)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEe-----CCCCCCHHH--HHHHHHHHHhCCCceEEEEEchhC
Confidence 888877765432 34555555554433322211111112 556666665 44444554431
Q ss_pred --HHHHHHHHhhhhHHH
Q 025648 154 --VLLRLVYIFLPTLLI 168 (250)
Q Consensus 154 --~~~~~~i~~fPti~~ 168 (250)
+..+|+|...|++.+
T Consensus 160 ~~~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 160 QDEVEALGIQGVPAVFL 176 (515)
T ss_pred HHHHHhcCCcccCEEEE
Confidence 238899999999864
No 260
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=95.37 E-value=0.0028 Score=46.22 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=35.2
Q ss_pred CCCCcCCCChhhhcCchHHHHHHHHHH----------------HHHHHHHhhhhHHHHhhhH
Q 025648 128 SCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 128 ~~~~pw~~~ck~~~~~~~~~~lA~~f~----------------~~~~~i~~fPti~~f~~~~ 173 (250)
++ +||+.|+.+ .|....++..+- ..+++|.++||+.+|.+|.
T Consensus 21 ~a--~~C~~C~~~--~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~ 78 (97)
T cd02949 21 TS--PTCGPCRTL--KPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKE 78 (97)
T ss_pred EC--CCChhHHHH--HHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCe
Confidence 55 899999999 888888887762 3789999999999997654
No 261
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.35 E-value=0.007 Score=44.51 Aligned_cols=49 Identities=16% Similarity=0.225 Sum_probs=31.8
Q ss_pred CCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCCh----hHHHhhCCCccCeEEEEeCce
Q 025648 21 SWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSSM 76 (250)
Q Consensus 21 ~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~----~l~~~~~I~~~PTi~l~~g~~ 76 (250)
||||+|++....+++..-.| ...|.+.++ .+.+..|-..+|++++ +|+.
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~------~~~di~~~~~~~~~l~~~tg~~tvP~vfi-~g~~ 77 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPF------AYVNVLEDPEIRQGIKEYSNWPTIPQLYV-KGEF 77 (97)
T ss_pred CCCchHHHHHHHHHHcCCCE------EEEECCCCHHHHHHHHHHhCCCCCCEEEE-CCEE
Confidence 99999999998888753322 222332333 4455567788999865 6643
No 262
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.27 E-value=0.19 Score=37.16 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=57.4
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeC--------ceeEEE
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNS--------SMRVRY 80 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g--------~~~~~~ 80 (250)
..++.++|-|+..--. .....|.++|+.+.+...++... ...+..++++ .|++++|.. .....|
T Consensus 16 ~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~~k~de~~~~y 87 (104)
T cd03069 16 SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLSNKFEDSSVKF 87 (104)
T ss_pred ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhhcccCcccccc
Confidence 3566777777766433 45678899999996655665542 3577888998 788888821 334568
Q ss_pred eCCCCHHHHHHHHHHh
Q 025648 81 HGSRTLDSLVAFYSDV 96 (250)
Q Consensus 81 ~G~~~~~~l~~fi~~~ 96 (250)
.|..+.++|.+||...
T Consensus 88 ~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 88 DGDLDSSKIKKFIREN 103 (104)
T ss_pred cCcCCHHHHHHHHHhh
Confidence 9988999999999864
No 263
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.19 Score=42.85 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=30.7
Q ss_pred hHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHHhh
Q 025648 56 SILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVT 97 (250)
Q Consensus 56 ~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi~~~~ 97 (250)
.++.++||.++||+++- ++ .+.|..+.++|.+.|....
T Consensus 206 ~~a~~~gv~gTPt~~v~-~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 206 KLAQQLGVNGTPTFIVN-GK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHHhcCCCcCCeEEEC-Ce---eecCCCCHHHHHHHHHHhh
Confidence 56778899999999984 43 7888888999999887653
No 264
>PTZ00062 glutaredoxin; Provisional
Probab=95.23 E-value=0.0019 Score=54.12 Aligned_cols=42 Identities=17% Similarity=0.024 Sum_probs=36.9
Q ss_pred CCCCcCCCChhhhcCchHHHHHHHHHH-------HHHHHHHhhhhHHHHhhhH
Q 025648 128 SCPFSWARSPENLLQQETYLALATAFV-------LLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 128 ~~~~pw~~~ck~~~~~~~~~~lA~~f~-------~~~~~i~~fPti~~f~~~~ 173 (250)
++ |||+.|+.| .|...+|+..|- ...|+|.+.||+++|.+|.
T Consensus 25 ~a--~w~~~C~~m--~~vl~~l~~~~~~~~F~~V~~d~~V~~vPtfv~~~~g~ 73 (204)
T PTZ00062 25 KS--SKEPEYEQL--MDVCNALVEDFPSLEFYVVNLADANNEYGVFEFYQNSQ 73 (204)
T ss_pred eC--CCCcchHHH--HHHHHHHHHHCCCcEEEEEccccCcccceEEEEEECCE
Confidence 56 999999999 999999999862 3559999999999999876
No 265
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=94.78 E-value=0.41 Score=35.18 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=57.2
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-e-CceeEEE-eCCCCH
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-N-SSMRVRY-HGSRTL 86 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~-g~~~~~~-~G~~~~ 86 (250)
.+..++|-|+..--. .....|.++|+.+.+...+.+.. .+++...+++. .|+++++ + ......| .|..+.
T Consensus 18 ~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~e~~~~y~~g~~~~ 90 (102)
T cd03066 18 EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEPFMEEPVTIPDKPYSE 90 (102)
T ss_pred cCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCCCCCCCcccCCCCCCH
Confidence 456666767765433 35567899999996655665542 35677788765 7999999 4 5556678 778899
Q ss_pred HHHHHHHHHh
Q 025648 87 DSLVAFYSDV 96 (250)
Q Consensus 87 ~~l~~fi~~~ 96 (250)
+.|.+||...
T Consensus 91 ~~l~~fi~~~ 100 (102)
T cd03066 91 EELVDFVEEH 100 (102)
T ss_pred HHHHHHHHHh
Confidence 9999999754
No 266
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.60 E-value=0.04 Score=51.09 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=35.9
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCCh---hHHHh---------hCCCccCeEEEEeCce
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP---SILSK---------YGVHGFPTLFLLNSSM 76 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~---~l~~~---------~~I~~~PTi~l~~g~~ 76 (250)
++.|..+|||+|++....+++. ++..- .+|.++.+ ++..+ .|.+++|++++ +|+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~-~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi-~~~~ 70 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFT-QISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV-GDVH 70 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeE-EEECCCChhHHHHHHHHhhccccccCCCCccCeEEE-CCEE
Confidence 6789999999999999888764 33222 23333333 22222 47789999966 6643
No 267
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.11 Score=38.79 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=36.3
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCC-CCEEEEEcCCCChhHHHh----hCCCccCeEEEEeCcee
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSK----YGVHGFPTLFLLNSSMR 77 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~-~~~v~~~d~~~~~~l~~~----~~I~~~PTi~l~~g~~~ 77 (250)
+|.|-.+||++|+++...|.+ +.- ...+..++.....++-+. -|-+.+|.+++ +|+-+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI-~Gk~i 78 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI-GGKFI 78 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE-CCEEE
Confidence 567999999999998877776 322 344455433333344333 34568888876 66544
No 268
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=94.52 E-value=0.0065 Score=42.43 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=35.2
Q ss_pred CCCCcCCCChhhhcCchHHHHHHHHH---------------HHHHHHHHhhhhHHHHhhhH
Q 025648 128 SCPFSWARSPENLLQQETYLALATAF---------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 128 ~~~~pw~~~ck~~~~~~~~~~lA~~f---------------~~~~~~i~~fPti~~f~~~~ 173 (250)
+. +||+.|..+ .+.+.+++... ++.++++.++||++++.+|.
T Consensus 18 ~~--~~C~~C~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 18 WA--PWCGPCKAI--APVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EC--CCChhHHHh--hHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCE
Confidence 55 899999999 89998888762 34889999999999998765
No 269
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=94.52 E-value=0.43 Score=38.68 Aligned_cols=36 Identities=31% Similarity=0.536 Sum_probs=30.0
Q ss_pred hHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHH
Q 025648 56 SILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYS 94 (250)
Q Consensus 56 ~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi~ 94 (250)
..+.++||.|+||+++ +|+ ..+.|....+.|.+.|.
T Consensus 158 ~~a~~~gv~GvP~~vv-~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 158 AEARQLGVFGVPTFVV-NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHTTCSSSSEEEE-TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHHcCCcccCEEEE-CCE--EEEECCCCHHHHHHHhC
Confidence 5567889999999999 776 78899999999988763
No 270
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.34 E-value=0.069 Score=44.72 Aligned_cols=84 Identities=13% Similarity=0.237 Sum_probs=64.6
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eCceeEEEe-------C
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYH-------G 82 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g~~~~~~~-------G 82 (250)
...++|..|-+.-+-|..+...+.=||.+|+.+.+..+-. .+-....+|...++||+.+| +|..+..|. .
T Consensus 159 s~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckiks--s~~gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlge 236 (273)
T KOG3171|consen 159 STTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKS--SNTGASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGE 236 (273)
T ss_pred eEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeee--ccccchhhhcccCCceEEEeeCCchhHHHHHHHHHHhh
Confidence 3468899999999999999999999999998766555532 23455788999999999999 666543332 2
Q ss_pred CCCHHHHHHHHHHh
Q 025648 83 SRTLDSLVAFYSDV 96 (250)
Q Consensus 83 ~~~~~~l~~fi~~~ 96 (250)
.....++..|+.+.
T Consensus 237 dffa~dle~FL~e~ 250 (273)
T KOG3171|consen 237 DFFAGDLESFLNEY 250 (273)
T ss_pred hhhhhhHHHHHHHc
Confidence 45677888888775
No 271
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=94.24 E-value=0.012 Score=41.11 Aligned_cols=38 Identities=5% Similarity=-0.039 Sum_probs=31.9
Q ss_pred cCCCChhhhcCchHHHHHHHHH-------------HHHHHHHHhhhhHHHHhhhH
Q 025648 132 SWARSPENLLQQETYLALATAF-------------VLLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 132 pw~~~ck~~~~~~~~~~lA~~f-------------~~~~~~i~~fPti~~f~~~~ 173 (250)
+||++|+.+ .|.+..++..+ ...+|+|.+-||+++ +|.
T Consensus 8 ~~C~~C~~~--~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~~vPti~i--~G~ 58 (76)
T TIGR00412 8 TGCANCQMT--EKNVKKAVEELGIDAEFEKVTDMNEILEAGVTATPGVAV--DGE 58 (76)
T ss_pred CCCcCHHHH--HHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCCcCCEEEE--CCE
Confidence 899999999 99999888765 137899999999988 554
No 272
>PRK10824 glutaredoxin-4; Provisional
Probab=93.98 E-value=0.03 Score=42.60 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=31.0
Q ss_pred CCChhHHhhhHHHHHHHHHcCCCCEEEEEcCC-CChhHHHhhCCCccCeEEEEeCcee
Q 025648 21 SWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA-IRPSILSKYGVHGFPTLFLLNSSMR 77 (250)
Q Consensus 21 ~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~-~~~~l~~~~~I~~~PTi~l~~g~~~ 77 (250)
||||+|++....|+++.-.| ..+.+++.. ....+.+.-|-+.+|.+++ +|+-+
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~---~~idi~~d~~~~~~l~~~sg~~TVPQIFI-~G~~I 81 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERF---AYVDILQNPDIRAELPKYANWPTFPQLWV-DGELV 81 (115)
T ss_pred CCCchHHHHHHHHHHcCCCc---eEEEecCCHHHHHHHHHHhCCCCCCeEEE-CCEEE
Confidence 69999999998888764333 233332211 1123334446667777766 66544
No 273
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=93.93 E-value=0.0074 Score=46.02 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.2
Q ss_pred HHHHHHHhhhhHHHHhhh
Q 025648 155 LLRLVYIFLPTLLIFAQF 172 (250)
Q Consensus 155 ~~~~~i~~fPti~~f~~~ 172 (250)
..+|+|.++||+++|.++
T Consensus 77 ~~~~~v~~~Pt~~~~~~~ 94 (125)
T cd02951 77 ARKYRVRFTPTVIFLDPE 94 (125)
T ss_pred HHHcCCccccEEEEEcCC
Confidence 367889999999999875
No 274
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=93.66 E-value=0.016 Score=38.98 Aligned_cols=35 Identities=9% Similarity=-0.003 Sum_probs=27.1
Q ss_pred cCCCChhhhcCchHHHHHHHHH---------------HHHHHHHHhhhhHHH
Q 025648 132 SWARSPENLLQQETYLALATAF---------------VLLRLVYIFLPTLLI 168 (250)
Q Consensus 132 pw~~~ck~~~~~~~~~~lA~~f---------------~~~~~~i~~fPti~~ 168 (250)
+||++|+.+ .+....++..+ +..++++.+.||+++
T Consensus 9 ~~C~~C~~~--~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 9 PTCPYCPDA--VQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred CCCCCcHHH--HHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 899999999 88888886653 237788888888743
No 275
>PRK09301 circadian clock protein KaiB; Provisional
Probab=93.42 E-value=0.32 Score=36.10 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=64.5
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHH-HcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCC
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSS-LYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRT 85 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~-~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~ 85 (250)
...+++=.|.|..-+.+++....+.++-+ .+++...+.++|..+++++++.++|-.+||++=....+..+..|..+
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~rriiGDls 80 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVRKIIGDLS 80 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcceeecccc
Confidence 44678888999999999998888888765 45667889999999999999999999999987666778888999874
No 276
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=93.30 E-value=0.37 Score=34.68 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=62.2
Q ss_pred CeEEEEEEcCCChhHHhhhHHHHHHHH-HcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCC
Q 025648 12 EYVAVLFYASWCPFSRNFRPSFSVLSS-LYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRT 85 (250)
Q Consensus 12 ~~vlV~Fya~wC~~C~~~~p~~e~la~-~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~ 85 (250)
.+++=.|.|..-+.+++....+.++-+ .+++...+.++|..+++++++.++|-.+||++=....+..+..|..+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~rriiGdls 77 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDLS 77 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCcceeecccc
Confidence 466778889989999998888888765 45667889999999999999999999999987666777888888874
No 277
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=93.20 E-value=0.019 Score=41.84 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=34.5
Q ss_pred cCCCChhhhcCchHHHHHHHHHH----------------HHHHHHH--hhhhHHHHhh
Q 025648 132 SWARSPENLLQQETYLALATAFV----------------LLRLVYI--FLPTLLIFAQ 171 (250)
Q Consensus 132 pw~~~ck~~~~~~~~~~lA~~f~----------------~~~~~i~--~fPti~~f~~ 171 (250)
+||++|+.+ .|.++.+|..|. ...++|. ++|+++++..
T Consensus 22 ~~~~~~~~~--~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 22 KDDSESEEL--RERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred CChhhHHHH--HHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEec
Confidence 899999999 999999999882 3788999 9999999987
No 278
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=93.16 E-value=0.014 Score=44.70 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=32.1
Q ss_pred cCCCChhhhcCchHHHHHHHHHH-----------------------HHHHHHH-hhhhHHHHhhhH
Q 025648 132 SWARSPENLLQQETYLALATAFV-----------------------LLRLVYI-FLPTLLIFAQFT 173 (250)
Q Consensus 132 pw~~~ck~~~~~~~~~~lA~~f~-----------------------~~~~~i~-~fPti~~f~~~~ 173 (250)
+||++|+.+ .|.+..++..+- ..+++|. +.||+++|..|.
T Consensus 38 ~WC~pCr~~--~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 38 SWCPDCVKA--EPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQ 101 (119)
T ss_pred CCCHhHHhh--chhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCc
Confidence 899999999 999998887752 1456777 999999996544
No 279
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=92.18 E-value=0.63 Score=32.27 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=51.7
Q ss_pred EEEEEEcCCChhHHhhhHHHHHHHHHc-CCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEE
Q 025648 14 VAVLFYASWCPFSRNFRPSFSVLSSLY-SSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRY 80 (250)
Q Consensus 14 vlV~Fya~wC~~C~~~~p~~e~la~~~-~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~ 80 (250)
.+..|-+..-+.+++....+.++-+.+ ++...+.++|..+++++++.++|-.+||++=....+..+.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P~P~rrl 70 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLPPPRRRL 70 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhcCCCCceEe
Confidence 456666777688888888888877665 5678899999999999999999999999865434444443
No 280
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=92.15 E-value=0.021 Score=43.74 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=31.2
Q ss_pred cCCCChhhhcCchHHHHHHHHHHH-------------------------HHH----HHHhhhhHHHHhhhH
Q 025648 132 SWARSPENLLQQETYLALATAFVL-------------------------LRL----VYIFLPTLLIFAQFT 173 (250)
Q Consensus 132 pw~~~ck~~~~~~~~~~lA~~f~~-------------------------~~~----~i~~fPti~~f~~~~ 173 (250)
|||++|+.+ .|....++...-. .++ +|.+-||+++|.+|.
T Consensus 33 ~~Cp~C~~~--~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk 101 (122)
T TIGR01295 33 KTCPYCRKF--SGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGK 101 (122)
T ss_pred CCChhHHHH--hHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCe
Confidence 999999999 9999998876310 223 455699999999886
No 281
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=91.68 E-value=0.093 Score=41.85 Aligned_cols=53 Identities=8% Similarity=0.129 Sum_probs=35.9
Q ss_pred CCeEEEEEE-cCCChhHHhh-hHHHHHHHHHcCC--CC-EEEEE--cCCCChhHHHhhCC
Q 025648 11 HEYVAVLFY-ASWCPFSRNF-RPSFSVLSSLYSS--IP-HFAIE--ESAIRPSILSKYGV 63 (250)
Q Consensus 11 ~~~vlV~Fy-a~wC~~C~~~-~p~~e~la~~~~~--~~-~v~~~--d~~~~~~l~~~~~I 63 (250)
++++++.|| +.||+.|... .+.|.+..+++.. .. .+++- +...+...++++++
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 445555555 9999999998 9999999998863 32 44442 22234567777776
No 282
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=91.46 E-value=2 Score=29.33 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=48.6
Q ss_pred EEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHHh
Q 025648 17 LFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDV 96 (250)
Q Consensus 17 ~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi~~~ 96 (250)
+++.++|++|++..=.++...-.| ....+...+....+.+...-..+|++. .+|..+ .+...|.+++++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~---~~~~v~~~~~~~~~~~~~p~~~vPvL~-~~g~~l------~dS~~I~~yL~~~ 70 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPY---ELVPVDPEEKRPEFLKLNPKGKVPVLV-DDGEVL------TDSAAIIEYLEER 70 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEE---EEEEEBTTSTSHHHHHHSTTSBSSEEE-ETTEEE------ESHHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeE---EEeccCcccchhHHHhhcccccceEEE-ECCEEE------eCHHHHHHHHHHH
Confidence 478899999999886665443222 222332223346677777778899998 565432 3778999999988
Q ss_pred hCC
Q 025648 97 TGM 99 (250)
Q Consensus 97 ~~~ 99 (250)
.+.
T Consensus 71 ~~~ 73 (75)
T PF13417_consen 71 YPG 73 (75)
T ss_dssp STS
T ss_pred cCC
Confidence 764
No 283
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=90.87 E-value=0.012 Score=56.87 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=30.0
Q ss_pred CCCCCCcCCCChhhhcCchHH---HHHHHHH-------------------HHHHHHHHhhhhHHHHh-hhH
Q 025648 126 EESCPFSWARSPENLLQQETY---LALATAF-------------------VLLRLVYIFLPTLLIFA-QFT 173 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~---~~lA~~f-------------------~~~~~~i~~fPti~~f~-~~~ 173 (250)
.+++ +||.+|+.+ .+.. .++...+ +.++|+|.++||+++|. +|.
T Consensus 480 dF~A--~WC~~Ck~~--e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~ 546 (571)
T PRK00293 480 DLYA--DWCVACKEF--EKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQ 546 (571)
T ss_pred EEEC--CcCHhHHHH--HHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCC
Confidence 3467 899999988 5442 2333322 12689999999999996 444
No 284
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=90.41 E-value=0.69 Score=31.26 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=33.4
Q ss_pred EEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEE
Q 025648 16 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFL 71 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l 71 (250)
+.|+.+||++|++.+-.+++..-.| ..+.++-.+..+++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~---e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITV---ELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCc---EEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 4678999999999887666553333 2222221223356666666778999964
No 285
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=89.78 E-value=1.5 Score=33.06 Aligned_cols=42 Identities=19% Similarity=0.564 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHcCCC---CEEEEEcCCCChhHHHhhCCCccCeEEEEeC
Q 025648 28 NFRPSFSVLSSLYSSI---PHFAIEESAIRPSILSKYGVHGFPTLFLLNS 74 (250)
Q Consensus 28 ~~~p~~e~la~~~~~~---~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g 74 (250)
.+.+....+.+..... ..+.+ +|.+.++|+|+.+||+++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~~~v~I-----dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPCPGVQI-----DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCCcceeE-----ChhHHhhCCceEcCEEEEEcC
Confidence 5556666555554432 23333 589999999999999999855
No 286
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=88.88 E-value=5.3 Score=29.08 Aligned_cols=73 Identities=11% Similarity=0.091 Sum_probs=49.4
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE-eC-ceeEEEeCCCCHHH
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NS-SMRVRYHGSRTLDS 88 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~-~g-~~~~~~~G~~~~~~ 88 (250)
+.+.++.|..+. ..|..+...++++++.-+.+. +...+.+. ..|++.+. ++ ..-.+|.|--.-.+
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~-~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~GhE 85 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLSDKIT-LEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGHE 85 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceE-EEEecCCC-----------CCCEEEEecCCCcccEEEEecCCchh
Confidence 344556666655 999999999999998775432 22322111 47999998 44 23489999777778
Q ss_pred HHHHHHHh
Q 025648 89 LVAFYSDV 96 (250)
Q Consensus 89 l~~fi~~~ 96 (250)
+..||...
T Consensus 86 f~Slilai 93 (94)
T cd02974 86 FTSLVLAL 93 (94)
T ss_pred HHHHHHHh
Confidence 88777653
No 287
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=88.74 E-value=2.9 Score=35.80 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=33.5
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCC
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIP 44 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~ 44 (250)
.+.++|.++.|.+-.||+=..-.+.|++++++|.++.
T Consensus 99 ~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~a 135 (237)
T PF00837_consen 99 AKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVA 135 (237)
T ss_pred ccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhh
Confidence 4578899999999999999999999999999998754
No 288
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=88.28 E-value=2.8 Score=28.58 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=42.9
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEe-CceeEEEeCCCCHHHHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLN-SSMRVRYHGSRTLDSLVAFY 93 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~-g~~~~~~~G~~~~~~l~~fi 93 (250)
+..|+.+.|++|++.+-.+.+..-.|. .+.+ +.....++ ..-+-..+|++..=+ |.... -.+...|.+++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~---~~~~-~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~----l~eS~~I~~yL 72 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYE---VVEV-NPVSRKEI-KWSSYKKVPILRVESGGDGQQ----LVDSSVIISTL 72 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceE---EEEC-CchhHHHH-HHhCCCccCEEEECCCCCccE----EEcHHHHHHHH
Confidence 456888999999999866665432221 1111 21111233 334556899887531 11111 23677888999
Q ss_pred HHhhC
Q 025648 94 SDVTG 98 (250)
Q Consensus 94 ~~~~~ 98 (250)
++.+|
T Consensus 73 ~~~~~ 77 (77)
T cd03040 73 KTYLG 77 (77)
T ss_pred HHHcC
Confidence 88765
No 289
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=88.04 E-value=0.21 Score=36.04 Aligned_cols=34 Identities=6% Similarity=0.005 Sum_probs=27.9
Q ss_pred cCCCChhhhcCchHHHHHHHHH---------------HHHHHHHHhhhhHH
Q 025648 132 SWARSPENLLQQETYLALATAF---------------VLLRLVYIFLPTLL 167 (250)
Q Consensus 132 pw~~~ck~~~~~~~~~~lA~~f---------------~~~~~~i~~fPti~ 167 (250)
|||+.|+.+ .+....++..+ ...+|+|.+.||++
T Consensus 22 ~~C~~C~~~--~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~v 70 (89)
T cd03026 22 LSCHNCPDV--VQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIF 70 (89)
T ss_pred CCCCCcHHH--HHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEE
Confidence 788888888 77788888765 23899999999995
No 290
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=87.99 E-value=1.2 Score=34.65 Aligned_cols=43 Identities=9% Similarity=0.223 Sum_probs=33.2
Q ss_pred ChhHHHhhCCCccCeEEEEeCc------------eeEEEeCCCCHHHHHHHHHHh
Q 025648 54 RPSILSKYGVHGFPTLFLLNSS------------MRVRYHGSRTLDSLVAFYSDV 96 (250)
Q Consensus 54 ~~~l~~~~~I~~~PTi~l~~g~------------~~~~~~G~~~~~~l~~fi~~~ 96 (250)
+|.+.++|+|+.+|++++..+. ......|..+.+.-.+.+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 5899999999999999999433 255667888877776666643
No 291
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=87.93 E-value=0.8 Score=30.69 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=34.5
Q ss_pred EEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcC-CCChhHHHhhCCCccCeEEEEeC
Q 025648 16 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES-AIRPSILSKYGVHGFPTLFLLNS 74 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~-~~~~~l~~~~~I~~~PTi~l~~g 74 (250)
..|+.++|++|++.+-.++...-.|.. ..+...+. ...+++.+...-..+|++..-+|
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~-~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~ 60 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPL-VTVDLAAGEQRSPEFLAKNPAGTVPVLELDDG 60 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceE-EEeecccCccCCHHHHhhCCCCCCCEEEeCCC
Confidence 467889999999998877765333322 12222111 12345555556678999975333
No 292
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=87.69 E-value=3.9 Score=37.77 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=62.4
Q ss_pred ccCCCeEEEEEEcCCChhHHhhh--HHHHHHHHHcCCCCEEEE--E-cCCCChhHHHhhCCCccCeEEEE--eCceeEEE
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFR--PSFSVLSSLYSSIPHFAI--E-ESAIRPSILSKYGVHGFPTLFLL--NSSMRVRY 80 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~--p~~e~la~~~~~~~~v~~--~-d~~~~~~l~~~~~I~~~PTi~l~--~g~~~~~~ 80 (250)
...++.++|.|-+-..-...+|. -.+.......-...+|++ . .......+..-|-+..+|.++++ +|.++...
T Consensus 15 aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevi 94 (506)
T KOG2507|consen 15 AKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVI 94 (506)
T ss_pred hhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEe
Confidence 34567788888888888888877 233333333222233333 2 22234567777899999999999 89999999
Q ss_pred eCCCCHHHHHHHHHHh
Q 025648 81 HGSRTLDSLVAFYSDV 96 (250)
Q Consensus 81 ~G~~~~~~l~~fi~~~ 96 (250)
.|..+.++|..-|++.
T Consensus 95 tg~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 95 TGFVTADELASSIEKV 110 (506)
T ss_pred eccccHHHHHHHHHHH
Confidence 9999999999888875
No 293
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=87.00 E-value=0.11 Score=45.57 Aligned_cols=42 Identities=10% Similarity=-0.077 Sum_probs=34.9
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHHH-------------------------HHHHHHHhhhhHHHHhh
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAFV-------------------------LLRLVYIFLPTLLIFAQ 171 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f~-------------------------~~~~~i~~fPti~~f~~ 171 (250)
.+|+ +||+.|+.+ .|...+++..+- ..+++|.+.||++++.+
T Consensus 172 ~F~A--swCp~C~~~--~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~ 238 (271)
T TIGR02740 172 FFFK--SDCPYCHQQ--APILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADP 238 (271)
T ss_pred EEEC--CCCccHHHH--hHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEEC
Confidence 3467 899999999 999999998752 25888999999999876
No 294
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=86.19 E-value=2.4 Score=33.63 Aligned_cols=54 Identities=17% Similarity=0.331 Sum_probs=34.5
Q ss_pred EEEEEcC------CChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCCh----hHHHhhCC----CccCeEEEEeCc
Q 025648 15 AVLFYAS------WCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGV----HGFPTLFLLNSS 75 (250)
Q Consensus 15 lV~Fya~------wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~----~l~~~~~I----~~~PTi~l~~g~ 75 (250)
+|.|+++ +|++|++....|+.+. +. +...|.+.++ +|.+..+- ..+|.+++ +|+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~-----V~-~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI-~G~ 69 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFR-----VK-FDERDVSMDSGFREELRELLGAELKAVSLPRVFV-DGR 69 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCC-----Cc-EEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE-CCE
Confidence 4667777 8999999998888653 22 2333443333 45555554 67888876 653
No 295
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.28 E-value=2 Score=39.16 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=62.3
Q ss_pred CCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHH
Q 025648 10 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSL 89 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l 89 (250)
.+..-+=-|++-.|..|-.....++-++-..+++.+..++.. ..++-.+.-+|.++||+++ ||+... +|.++.++|
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa-~Fq~Evear~IMaVPtvfl-nGe~fg--~GRmtleei 190 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGA-LFQDEVEARNIMAVPTVFL-NGEEFG--QGRMTLEEI 190 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecch-hhHhHHHhccceecceEEE-cchhhc--ccceeHHHH
Confidence 345566678888899999999889988888899999988543 4445556669999999887 775432 567788888
Q ss_pred HHHHHH
Q 025648 90 VAFYSD 95 (250)
Q Consensus 90 ~~fi~~ 95 (250)
..-|..
T Consensus 191 laki~~ 196 (520)
T COG3634 191 LAKIDT 196 (520)
T ss_pred HHHhcC
Confidence 776654
No 296
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=84.90 E-value=7.5 Score=30.49 Aligned_cols=76 Identities=9% Similarity=0.173 Sum_probs=51.4
Q ss_pred CeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCC----ccCeEEEEeCceeEEEeCCCCHH
Q 025648 12 EYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVH----GFPTLFLLNSSMRVRYHGSRTLD 87 (250)
Q Consensus 12 ~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~----~~PTi~l~~g~~~~~~~G~~~~~ 87 (250)
..-++.|++|.|+=|..-...++. .+ ..|..+..+....+.+++||. +==|.+ ++|. ...|...++
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~-----~G-f~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V-I~Gy---~vEGHVPa~ 94 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKA-----NG-FEVKVVETDDFLALKRRLGIPYEMQSCHTAV-INGY---YVEGHVPAE 94 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHh-----CC-cEEEEeecCcHHHHHHhcCCChhhccccEEE-EcCE---EEeccCCHH
Confidence 345788999999999886655551 12 345555555667788888875 333333 3664 345778999
Q ss_pred HHHHHHHHhh
Q 025648 88 SLVAFYSDVT 97 (250)
Q Consensus 88 ~l~~fi~~~~ 97 (250)
+|..++.+.-
T Consensus 95 aI~~ll~~~p 104 (149)
T COG3019 95 AIARLLAEKP 104 (149)
T ss_pred HHHHHHhCCC
Confidence 9999998753
No 297
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=84.58 E-value=0.046 Score=46.32 Aligned_cols=68 Identities=19% Similarity=0.178 Sum_probs=46.3
Q ss_pred CCCCCCCccccCCCCCcccccCCCCCCCCCcCCCChhhhcCchHHHHHHHHH-----------------HHHHHHHHhhh
Q 025648 102 ASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF-----------------VLLRLVYIFLP 164 (250)
Q Consensus 102 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f-----------------~~~~~~i~~fP 164 (250)
..++++|...+... .+. . ...+ |||.+|+++ ++.|..+|..= +.-||.++..|
T Consensus 27 ~~~~eenw~~~l~g-ewm--i---~~~a--p~~psc~~~--~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLp 96 (248)
T KOG0913|consen 27 TRIDEENWKELLTG-EWM--I---EFGA--PWCPSCSDL--IPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALP 96 (248)
T ss_pred EEecccchhhhhch-HHH--H---HhcC--CCCccccch--HHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecc
Confidence 34555666555433 111 1 2245 999999999 99999888653 12788899999
Q ss_pred hHHHHhhhHHHHHHH
Q 025648 165 TLLIFAQFTWRRLIR 179 (250)
Q Consensus 165 ti~~f~~~~~~~~~~ 179 (250)
||.-...|..|+|-+
T Consensus 97 tIYHvkDGeFrrysg 111 (248)
T KOG0913|consen 97 TIYHVKDGEFRRYSG 111 (248)
T ss_pred eEEEeeccccccccC
Confidence 998888877655533
No 298
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=83.96 E-value=3 Score=28.61 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=41.5
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCC-CChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA-IRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 93 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~-~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi 93 (250)
+..++.++|++|.+.+-.+++..-.|. .+.+.... ..+++.+..+-..+|+++.-+++.. -.+...|.+++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~---~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~-----l~es~~I~~yL 73 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVI---LYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ-----MFESADIVKYL 73 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEE---EEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE-----EEcHHHHHHHH
Confidence 356778899999998877765533331 12221111 1234444445568999854322221 23567788887
Q ss_pred HHh
Q 025648 94 SDV 96 (250)
Q Consensus 94 ~~~ 96 (250)
++.
T Consensus 74 ~~~ 76 (77)
T cd03041 74 FKT 76 (77)
T ss_pred HHh
Confidence 764
No 299
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.63 E-value=3.8 Score=34.82 Aligned_cols=44 Identities=16% Similarity=0.360 Sum_probs=36.1
Q ss_pred hHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHHhhCCCCC
Q 025648 56 SILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTGMNTA 102 (250)
Q Consensus 56 ~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi~~~~~~~~~ 102 (250)
..++++||+++||+++ ++ -....|..+.+.+...|.+.++....
T Consensus 175 ~~A~e~gI~gVP~fv~-d~--~~~V~Gaq~~~v~~~al~~~~~~~~~ 218 (225)
T COG2761 175 AAAQEMGIRGVPTFVF-DG--KYAVSGAQPYDVLEDALRQLLAEKAE 218 (225)
T ss_pred HHHHHCCCccCceEEE-cC--cEeecCCCCHHHHHHHHHHHHhcccc
Confidence 5678899999999998 33 35568999999999999999876653
No 300
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=82.52 E-value=7.9 Score=33.59 Aligned_cols=87 Identities=15% Similarity=0.202 Sum_probs=55.0
Q ss_pred CCCeEEEEEEcCCChh-HHhhhHHHHHHHHHcCC---C----CEEEEEcCCC--------------------------Ch
Q 025648 10 SHEYVAVLFYASWCPF-SRNFRPSFSVLSSLYSS---I----PHFAIEESAI--------------------------RP 55 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~-C~~~~p~~e~la~~~~~---~----~~v~~~d~~~--------------------------~~ 55 (250)
.++.++++|--+.||. |-.....+-++.+.... + +++.+ |.+. .+
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsv-DPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk 216 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISV-DPERDSVEVVAEYVSEFHPKLLGLTGTTEQVK 216 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEe-CcccCCHHHHHHHHHhcChhhhcccCCHHHHH
Confidence 3578999999999996 87765555555554332 1 23333 3311 13
Q ss_pred hHHHhhCCCccC-------------eEEEE--e-CceeEEEeC-CCCHHHHHHHHHHhh
Q 025648 56 SILSKYGVHGFP-------------TLFLL--N-SSMRVRYHG-SRTLDSLVAFYSDVT 97 (250)
Q Consensus 56 ~l~~~~~I~~~P-------------Ti~l~--~-g~~~~~~~G-~~~~~~l~~fi~~~~ 97 (250)
++|++|.|.--+ +|++| + ....++|-| .++.+++.+-|.++.
T Consensus 217 ~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 217 QVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHV 275 (280)
T ss_pred HHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHH
Confidence 778888876433 45666 3 334556665 789999999888765
No 301
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=82.41 E-value=1.2 Score=28.77 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=31.5
Q ss_pred EEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCCh-hHHHhhCCCccCeEEE
Q 025648 16 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP-SILSKYGVHGFPTLFL 71 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~-~l~~~~~I~~~PTi~l 71 (250)
..|+.++|+.|++..-.++...-.|. ...+...+... .+....+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYE---LVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcE---EEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 36888999999998877776533331 22221111111 2455566778898765
No 302
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=81.60 E-value=7.5 Score=33.58 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=41.3
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhC-CCccCeEEEE
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYG-VHGFPTLFLL 72 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~-I~~~PTi~l~ 72 (250)
...+|+.+++.-+.|||.|-..+=.+-.+-.+|.+. .+.-...+. .+ -..+||+++.
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~-~l~~~~S~~-------~d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF-SLEYHYSDP-------YDNYPNTPTLIFN 112 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe-eeEEeecCc-------ccCCCCCCeEEEe
Confidence 356899999999999999999876666666778776 444433322 22 2478999887
No 303
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=81.33 E-value=1.3 Score=35.35 Aligned_cols=24 Identities=8% Similarity=-0.125 Sum_probs=20.7
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAF 153 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f 153 (250)
.+|+ +||++|+.. .|...+++..+
T Consensus 56 nFWA--sWCppCr~e--~P~L~~l~~~~ 79 (153)
T TIGR02738 56 FFYQ--STCPYCHQF--APVLKRFSQQF 79 (153)
T ss_pred EEEC--CCChhHHHH--HHHHHHHHHHc
Confidence 4578 899999999 99999998765
No 304
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=80.45 E-value=1.5 Score=32.18 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=17.9
Q ss_pred EEEEcCCChhHHhhhHHHHHH
Q 025648 16 VLFYASWCPFSRNFRPSFSVL 36 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~l 36 (250)
..|+.++|+.|++....+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH 22 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 578999999999998777764
No 305
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=80.10 E-value=21 Score=26.32 Aligned_cols=77 Identities=9% Similarity=0.073 Sum_probs=52.3
Q ss_pred CeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeC--------ceeEEEeCC
Q 025648 12 EYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNS--------SMRVRYHGS 83 (250)
Q Consensus 12 ~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g--------~~~~~~~G~ 83 (250)
+.++|-|+..--+ .....|.++|+.+.+...+++.. ...+..++++. .|.+++|.. .....|.|.
T Consensus 20 ~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~~~~k~e~~~~~~~~~ 92 (107)
T cd03068 20 DVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEKFQSKYEPKSHVLNKK 92 (107)
T ss_pred CEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEECcHHHhhhcCcceeeeecc
Confidence 6677777766433 45667899999997656665543 35777888876 566777722 235677877
Q ss_pred -CCHHH-HHHHHHH
Q 025648 84 -RTLDS-LVAFYSD 95 (250)
Q Consensus 84 -~~~~~-l~~fi~~ 95 (250)
.+.++ |.+||.+
T Consensus 93 ~~~~~~~~~~f~~~ 106 (107)
T cd03068 93 DSTSEDELKDFFKE 106 (107)
T ss_pred ccchHHHHHHHHhc
Confidence 56655 9999975
No 306
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.04 E-value=0.85 Score=31.81 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=39.0
Q ss_pred EEEEcCCChhHHhhhHHHHHHHHHcCCC----------CEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeE
Q 025648 16 VLFYASWCPFSRNFRPSFSVLSSLYSSI----------PHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRV 78 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~la~~~~~~----------~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~ 78 (250)
++|++.-||.|..+...++++.-.|.-+ .++...|....=+-.+..|--|+|.+..=+|+.+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 6799999999988877777665444321 11111222111233566777899999876666554
No 307
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.91 E-value=3.1 Score=34.59 Aligned_cols=43 Identities=30% Similarity=0.403 Sum_probs=34.4
Q ss_pred hhHHHhhCCCccCeEEEE-eCceeEEEeC--CCCHHHHHHHHHHhh
Q 025648 55 PSILSKYGVHGFPTLFLL-NSSMRVRYHG--SRTLDSLVAFYSDVT 97 (250)
Q Consensus 55 ~~l~~~~~I~~~PTi~l~-~g~~~~~~~G--~~~~~~l~~fi~~~~ 97 (250)
..++++.|+.||||+++- ||+....-.| ..+.+++..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 368889999999999999 7776666566 457788888888764
No 308
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=79.16 E-value=1.8 Score=29.08 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=32.7
Q ss_pred EEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCC-CChhHHHhhCCCccCeEEE
Q 025648 16 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA-IRPSILSKYGVHGFPTLFL 71 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~-~~~~l~~~~~I~~~PTi~l 71 (250)
..|+.++|++|++.+-.+++..-.|.- ..+...+.+ ..+++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~-~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLELNL-KEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCCEE-EEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 468899999999887777665433321 111111111 2356666555668999953
No 309
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=79.05 E-value=3.9 Score=27.28 Aligned_cols=70 Identities=9% Similarity=0.057 Sum_probs=40.5
Q ss_pred EEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHH
Q 025648 16 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSD 95 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi~~ 95 (250)
..|+.++|+.|++.+-.+++..-.|. .+.++-....+++.+......+|++.. +|.. -.+...|.+++.+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~~---~~~v~~~~~~~~~~~~~p~~~vP~l~~-~~~~------l~es~aI~~yL~~ 71 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSVE---IIDVDPDNPPEDLAELNPYGTVPTLVD-RDLV------LYESRIIMEYLDE 71 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCccE---EEEcCCCCCCHHHHhhCCCCCCCEEEE-CCEE------EEcHHHHHHHHHh
Confidence 56889999999998877665543332 111211122345555555668997742 3321 2355677777765
No 310
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=79.02 E-value=0.22 Score=37.29 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=15.5
Q ss_pred CCCCcCCCChhhhcCchHHHHHHHH
Q 025648 128 SCPFSWARSPENLLQQETYLALATA 152 (250)
Q Consensus 128 ~~~~pw~~~ck~~~~~~~~~~lA~~ 152 (250)
++ +||+.|..+ .|.+..++..
T Consensus 28 ~~--~~C~~C~~~--~~~l~~~~~~ 48 (123)
T cd03011 28 WA--TWCPVCRFT--SPTVNQLAAD 48 (123)
T ss_pred EC--CcChhhhhh--ChHHHHHHhh
Confidence 55 899999998 6666655443
No 311
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=77.49 E-value=0.96 Score=32.21 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=44.2
Q ss_pred EEcCCChhHHhhhHHHHHHHHH-cCCCCEEEEEcCCCChhHHHhhCCCccCeEEE
Q 025648 18 FYASWCPFSRNFRPSFSVLSSL-YSSIPHFAIEESAIRPSILSKYGVHGFPTLFL 71 (250)
Q Consensus 18 Fya~wC~~C~~~~p~~e~la~~-~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l 71 (250)
|-+..-+.+++....++.+.+. +++...+.++|..+++++++.++|-.+||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 4455556677888888888876 55678999999999999999999999999863
No 312
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=77.28 E-value=4.9 Score=33.61 Aligned_cols=43 Identities=21% Similarity=0.389 Sum_probs=33.7
Q ss_pred CChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHH
Q 025648 53 IRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSD 95 (250)
Q Consensus 53 ~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi~~ 95 (250)
.+|.+.++|+|+.+|++++..+.......|..+...-.+.+..
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~~~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcCCCCCEEEecccHHHHHHHHHh
Confidence 3689999999999999999955555677888887666665554
No 313
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=76.22 E-value=4.9 Score=26.85 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=36.3
Q ss_pred EEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEe-CceeEEEeCCCCHHHHHHHHH
Q 025648 16 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLN-SSMRVRYHGSRTLDSLVAFYS 94 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~-g~~~~~~~G~~~~~~l~~fi~ 94 (250)
.+++.++|++|++.+-.+....-.|. .+.+ +........+..+-..+|++.. + |.. -.+...|.++++
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~---~~~~-~~~~~~~~~~~~~~~~vP~L~~-~~~~~------l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVE---QIIL-QNDDEATPIRMIGAKQVPILEK-DDGSF------MAESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeE---EEEC-CCCchHHHHHhcCCCccCEEEe-CCCeE------eehHHHHHHHHh
Confidence 35778999999998877665433221 1112 2222222233344456888743 3 321 234566666664
No 314
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=75.79 E-value=4.2 Score=33.13 Aligned_cols=36 Identities=14% Similarity=0.328 Sum_probs=28.2
Q ss_pred hhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHH
Q 025648 55 PSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 93 (250)
Q Consensus 55 ~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi 93 (250)
.+.+.+.||.|+||+++ +|+ ....|..+.+.+.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv-~g~--~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF-NGK--YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE-CCe--EeecCCCCHHHHHHHh
Confidence 35677889999999998 664 3467899999888765
No 315
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.70 E-value=9.2 Score=37.56 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=48.2
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHH-H--HHHHHHcCC-CCEEEEEcCCCChhHHHhhC--------CCccCeEEEE--e
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPS-F--SVLSSLYSS-IPHFAIEESAIRPSILSKYG--------VHGFPTLFLL--N 73 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~-~--e~la~~~~~-~~~v~~~d~~~~~~l~~~~~--------I~~~PTi~l~--~ 73 (250)
...++|+++-.-.+||-.|+-|..+ | .++|+.+.. .+.|.+ |-++-|++-+.|. --|.|-.++. +
T Consensus 40 ~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKV-DREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd 118 (667)
T COG1331 40 KEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKV-DREERPDVDSLYMNASQAITGQGGWPLTVFLTPD 118 (667)
T ss_pred HHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeE-ChhhccCHHHHHHHHHHHhccCCCCceeEEECCC
Confidence 4678999999999999999999653 2 335554433 444444 6667777666664 4479998888 6
Q ss_pred Ccee
Q 025648 74 SSMR 77 (250)
Q Consensus 74 g~~~ 77 (250)
+++.
T Consensus 119 ~kPF 122 (667)
T COG1331 119 GKPF 122 (667)
T ss_pred Ccee
Confidence 6654
No 316
>PHA03075 glutaredoxin-like protein; Provisional
Probab=74.68 E-value=3.5 Score=31.27 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=27.3
Q ss_pred CeEEEEEEcCCChhHHhhhHHHHHHHHHcC
Q 025648 12 EYVAVLFYASWCPFSRNFRPSFSVLSSLYS 41 (250)
Q Consensus 12 ~~vlV~Fya~wC~~C~~~~p~~e~la~~~~ 41 (250)
+.++|.|.-|-|+-|+.....+.++.++|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999999988885
No 317
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=74.33 E-value=3 Score=31.18 Aligned_cols=21 Identities=10% Similarity=0.127 Sum_probs=17.6
Q ss_pred EEEEcCCChhHHhhhHHHHHH
Q 025648 16 VLFYASWCPFSRNFRPSFSVL 36 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~l 36 (250)
..|+.++|+.|++....+++-
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH 22 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 468899999999998777763
No 318
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=74.16 E-value=3 Score=30.92 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=17.5
Q ss_pred EEEEcCCChhHHhhhHHHHHH
Q 025648 16 VLFYASWCPFSRNFRPSFSVL 36 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~l 36 (250)
..|+.|+|+.|++....+++-
T Consensus 2 ~iy~~~~C~~crka~~~L~~~ 22 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR 22 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc
Confidence 578999999999988777654
No 319
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=73.64 E-value=1.8 Score=31.80 Aligned_cols=23 Identities=13% Similarity=-0.112 Sum_probs=18.8
Q ss_pred CCCCCcCCCChhhhcCchHHHHHHHHH
Q 025648 127 ESCPFSWARSPENLLQQETYLALATAF 153 (250)
Q Consensus 127 ~~~~~pw~~~ck~~~~~~~~~~lA~~f 153 (250)
+|+ +||++|+.. .|.+..++..+
T Consensus 28 F~~--~wC~~C~~~--~p~l~~~~~~~ 50 (114)
T cd02967 28 FLS--PTCPVCKKL--LPVIRSIARAE 50 (114)
T ss_pred EEC--CCCcchHhH--hHHHHHHHHHh
Confidence 466 899999998 88888887654
No 320
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=73.13 E-value=38 Score=25.57 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=52.0
Q ss_pred EEEEEE-cCCChhHHhhhHHHHHHHHHcCC--CCEEEEEcCCCCh-----------hHHHhhCCCcc-CeEEEE--eCce
Q 025648 14 VAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESAIRP-----------SILSKYGVHGF-PTLFLL--NSSM 76 (250)
Q Consensus 14 vlV~Fy-a~wC~~C~~~~p~~e~la~~~~~--~~~v~~~d~~~~~-----------~l~~~~~I~~~-PTi~l~--~g~~ 76 (250)
++|.|- ++.-+.=+.+...+++-...+.. ++.+.+.+..... .+.++|++..- -+++++ +|++
T Consensus 12 ~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~v 91 (118)
T PF13778_consen 12 LLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGV 91 (118)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcE
Confidence 344443 33444555556666664444543 4455554444433 88899996532 334444 8899
Q ss_pred eEEEeCCCCHHHHHHHHHH
Q 025648 77 RVRYHGSRTLDSLVAFYSD 95 (250)
Q Consensus 77 ~~~~~G~~~~~~l~~fi~~ 95 (250)
..++....+.++|-+.|..
T Consensus 92 K~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 92 KLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred EEecCCCCCHHHHHHHHhC
Confidence 9999999999999998875
No 321
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=73.11 E-value=3.9 Score=31.59 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=17.8
Q ss_pred EEEEEcCCChhHHhhhHHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVL 36 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~l 36 (250)
+..|+.++|+.|++....+++-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~ 23 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4578899999999988776644
No 322
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=71.38 E-value=14 Score=30.81 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=44.2
Q ss_pred CCCeEEEEEEcCCChh-HHhhhHHHHHHHHHcC-C------CCEEEEEcCCCChhHHHhhCC-CccCeEEEE
Q 025648 10 SHEYVAVLFYASWCPF-SRNFRPSFSVLSSLYS-S------IPHFAIEESAIRPSILSKYGV-HGFPTLFLL 72 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~~-C~~~~p~~e~la~~~~-~------~~~v~~~d~~~~~~l~~~~~I-~~~PTi~l~ 72 (250)
.+++++|.|.=+.||. |-.....+.++.+... . ++.|.+|-....++..++|.. .-.|-+...
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~l 137 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGL 137 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeee
Confidence 6789999999899995 9999998888888776 2 234444323345788888887 445544443
No 323
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=70.84 E-value=27 Score=31.75 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=56.5
Q ss_pred CCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC-CCEEEEEcCCCChhHHHhhCCCccCeEEEE---eCceeEEEeCCCCH
Q 025648 11 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFPTLFLL---NSSMRVRYHGSRTL 86 (250)
Q Consensus 11 ~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~-~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~---~g~~~~~~~G~~~~ 86 (250)
+.+-+|=|+.+--+. -...|+++|+.|.. +.++++. ++.+++++++. .=.+-+| -.+++..-..+.+.
T Consensus 165 d~~klIGyFk~~~s~---~yk~FeeAAe~F~p~IkFfAtf----d~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e 236 (383)
T PF01216_consen 165 DDIKLIGYFKSEDSE---HYKEFEEAAEHFQPYIKFFATF----DKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTE 236 (383)
T ss_dssp SS-EEEEE-SSTTSH---HHHHHHHHHHHCTTTSEEEEE-----SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--H
T ss_pred cceeEEEEeCCCCcH---HHHHHHHHHHhhcCceeEEEEe----cchhhhhcCcc-ccceeeeccccCCCccCCCCCCCH
Confidence 357777777765332 23468999999976 5666664 48899999997 6677777 23444443446799
Q ss_pred HHHHHHHHHhhCCCCCCCCCCC
Q 025648 87 DSLVAFYSDVTGMNTASLDKIS 108 (250)
Q Consensus 87 ~~l~~fi~~~~~~~~~~l~~~~ 108 (250)
++|.+||+++..+....+++.+
T Consensus 237 ~e~~~fi~~h~rptlrkl~~~~ 258 (383)
T PF01216_consen 237 EELVEFIEEHKRPTLRKLRPED 258 (383)
T ss_dssp HHHHHHHHHT-S-SEEE--GGG
T ss_pred HHHHHHHHHhchhHhhhCChhh
Confidence 9999999999888777777666
No 324
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=69.84 E-value=5.4 Score=32.12 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=25.7
Q ss_pred hHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHH
Q 025648 56 SILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 93 (250)
Q Consensus 56 ~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi 93 (250)
..+.+.||.|+||+++ +|+ .+.|....+.|.+.+
T Consensus 158 ~~a~~~gi~gvPtfvv-~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV-DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE-CCe---eecccccHHHHHHHh
Confidence 5677889999999988 664 556777777766554
No 325
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=68.53 E-value=4.6 Score=30.34 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=17.3
Q ss_pred EEEEcCCChhHHhhhHHHHH
Q 025648 16 VLFYASWCPFSRNFRPSFSV 35 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~ 35 (250)
..|+.++|+.|++....+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA 21 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 46899999999999887776
No 326
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=66.74 E-value=16 Score=25.74 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=32.7
Q ss_pred EEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEE
Q 025648 14 VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFL 71 (250)
Q Consensus 14 vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l 71 (250)
.+..|+.+.|++|++.+-.++...-.|. .+.++.....+.+.+......+|++..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~---~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHE---VININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCe---EEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 3566788889999998766665433222 222221112234555556678999875
No 327
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=66.06 E-value=55 Score=24.66 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=61.9
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCCCC--EEEEEcCCCChhHH----HhhCCC-ccCeEEEE--eCcee-
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIP--HFAIEESAIRPSIL----SKYGVH-GFPTLFLL--NSSMR- 77 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~--~v~~~d~~~~~~l~----~~~~I~-~~PTi~l~--~g~~~- 77 (250)
..-++..+|-|--+-.+.-.++.+.+.++|+.+.... .+.-+|.+..+-+. +.|+|. .-|.|=++ ....-
T Consensus 17 dd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSv 96 (120)
T cd03074 17 DDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSV 96 (120)
T ss_pred cccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccce
Confidence 3446778899999999999999999999999987632 33334777766554 456665 34888777 22222
Q ss_pred -EEEeCC---CCHHHHHHHHHHh
Q 025648 78 -VRYHGS---RTLDSLVAFYSDV 96 (250)
Q Consensus 78 -~~~~G~---~~~~~l~~fi~~~ 96 (250)
.+..+. .++++|..||+..
T Consensus 97 W~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 97 WMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred eEecccccccCcHHHHHHHHHhh
Confidence 233233 5789999999875
No 328
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=65.50 E-value=88 Score=26.87 Aligned_cols=90 Identities=14% Similarity=0.184 Sum_probs=49.3
Q ss_pred CCeEEEEEEcCC------ChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHh----hCCCc---------------
Q 025648 11 HEYVAVLFYASW------CPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSK----YGVHG--------------- 65 (250)
Q Consensus 11 ~~~vlV~Fya~w------C~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~----~~I~~--------------- 65 (250)
+++|-|.+|.+- -+.=+.+...+++.+..-++...+..+|.+.+++..++ +||..
T Consensus 24 ~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~~ 103 (271)
T PF09822_consen 24 DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQIEIVDNGKASIVT 103 (271)
T ss_pred CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccceeeccccccccee
Confidence 446666666554 22333334444444444455778888888776666555 88887
Q ss_pred -cCeEEEEeCc--eeEEEeC----CCCHHHHHHHHHHhhCCC
Q 025648 66 -FPTLFLLNSS--MRVRYHG----SRTLDSLVAFYSDVTGMN 100 (250)
Q Consensus 66 -~PTi~l~~g~--~~~~~~G----~~~~~~l~~fi~~~~~~~ 100 (250)
++.+++-.|. ....+.. ..-..+|...|.+.+...
T Consensus 104 ~~~~~~v~~~~~~~~i~~~~~~~~~~~E~~lt~aI~~v~~~~ 145 (271)
T PF09822_consen 104 VYGGIVVEYGDREEVIPFLDSMSEFNLEYELTSAIRRVTSDE 145 (271)
T ss_pred ecCeEEEEECCeEEEeecccccccccHHHHHHHHHHHHhccc
Confidence 4444444222 2222222 223567777777776553
No 329
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=65.11 E-value=11 Score=30.39 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=25.5
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCC
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSS 42 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~ 42 (250)
+..|+.+.||+|-...+.++++.+.++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 6789999999999999999999999853
No 330
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=65.00 E-value=5.7 Score=26.34 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=30.8
Q ss_pred EEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEE--cC-CCChhHHHhhCCCccCeEEE
Q 025648 16 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE--ES-AIRPSILSKYGVHGFPTLFL 71 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~--d~-~~~~~l~~~~~I~~~PTi~l 71 (250)
..|+.+.|+.|++.+-.++...-.|. .+.++ +. ...+++.+...-..+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPYE---WVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcE---EEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 46888999999998777665543332 22221 11 12234444444567899864
No 331
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=63.91 E-value=8.1 Score=28.92 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=17.9
Q ss_pred EEEEEcCCChhHHhhhHHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVL 36 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~l 36 (250)
+..|+.++|+.|++....+++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~ 23 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH 23 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4568899999999988777763
No 332
>PRK12559 transcriptional regulator Spx; Provisional
Probab=63.78 E-value=8 Score=29.89 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=17.8
Q ss_pred EEEEEcCCChhHHhhhHHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVL 36 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~l 36 (250)
+..|+.|+|+.|++....+++-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5678999999999988666653
No 333
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=63.75 E-value=0.47 Score=36.94 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=17.3
Q ss_pred HHHHHHHhhhhHHHHhhhH
Q 025648 155 LLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 155 ~~~~~i~~fPti~~f~~~~ 173 (250)
..+|+|.+.||+++|.+|.
T Consensus 84 A~~fgV~siPTLl~FkdGk 102 (132)
T PRK11509 84 GDRFGVFRFPATLVFTGGN 102 (132)
T ss_pred HHHcCCccCCEEEEEECCE
Confidence 3799999999999999987
No 334
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=63.61 E-value=3.9 Score=31.16 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=19.6
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHHH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAFV 154 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f~ 154 (250)
.+++ +||++|+.. .|...+++..+.
T Consensus 23 ~F~a--twC~~C~~~--~p~l~~l~~~~~ 47 (132)
T cd02964 23 YFSA--SWCPPCRAF--TPKLVEFYEKLK 47 (132)
T ss_pred EEEC--CCCchHHHH--HHHHHHHHHHHh
Confidence 3466 899999998 888888777654
No 335
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.55 E-value=0.9 Score=38.36 Aligned_cols=40 Identities=15% Similarity=0.325 Sum_probs=35.1
Q ss_pred cCCCChhhhcCchHHHHHHHHHHH-----------------HHHHHH------hhhhHHHHhhhH
Q 025648 132 SWARSPENLLQQETYLALATAFVL-----------------LRLVYI------FLPTLLIFAQFT 173 (250)
Q Consensus 132 pw~~~ck~~~~~~~~~~lA~~f~~-----------------~~~~i~------~fPti~~f~~~~ 173 (250)
.|...|.+. .|.|-+|+..|-+ .||+|. ..||+++|.+|.
T Consensus 154 ~ws~~Cv~~--spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gk 216 (265)
T KOG0914|consen 154 CWSPKCVRF--SPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGK 216 (265)
T ss_pred ecChhhccc--ccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccch
Confidence 799999999 9999999999943 777776 499999999987
No 336
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=61.51 E-value=8.7 Score=31.06 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=25.3
Q ss_pred CCCeEEEEEEcCCCh-hHHhhhHHHHHHHHHcC
Q 025648 10 SHEYVAVLFYASWCP-FSRNFRPSFSVLSSLYS 41 (250)
Q Consensus 10 ~~~~vlV~Fya~wC~-~C~~~~p~~e~la~~~~ 41 (250)
.+++++|.|.-..|| .|-.+...+.++.+.++
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~ 83 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLG 83 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhh
Confidence 578999999999997 59988888888777654
No 337
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=60.18 E-value=61 Score=27.35 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=43.4
Q ss_pred CChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHHhhCCC
Q 025648 22 WCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTGMN 100 (250)
Q Consensus 22 wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi~~~~~~~ 100 (250)
.|++|+++.-.+. ..-. ...+..+|...-++......-.+=|-++.|+++ +..+.+.|.++|++.++..
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~------~~tDs~~Ie~~Lee~l~~p 88 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEK------WVTDSDKIEEFLEEKLPPP 88 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeEEeCCc------eeccHHHHHHHHHHhcCCC
Confidence 5999999887776 2111 446666676655655544433333434444542 3467899999999988754
No 338
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=56.47 E-value=6.9 Score=27.36 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=29.3
Q ss_pred cCCCChhhhcCchHHHHHHHHHH-----------------HHHHH--HHhhhhHHHHhhhH
Q 025648 132 SWARSPENLLQQETYLALATAFV-----------------LLRLV--YIFLPTLLIFAQFT 173 (250)
Q Consensus 132 pw~~~ck~~~~~~~~~~lA~~f~-----------------~~~~~--i~~fPti~~f~~~~ 173 (250)
+||++|+.+ .|....++..+. ...++ +..+|++..+.++.
T Consensus 42 ~~C~~C~~~--~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 100 (127)
T COG0526 42 PWCPPCRAE--APLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGK 100 (127)
T ss_pred CcCHHHHhh--chhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcc
Confidence 899999999 999998888763 15555 66667766555443
No 339
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=54.88 E-value=14 Score=28.61 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=16.6
Q ss_pred EEEEEcCCChhHHhhhHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSV 35 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~ 35 (250)
+..|+.|+|+.|++....+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 456889999999998766654
No 340
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=53.56 E-value=19 Score=26.44 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=27.0
Q ss_pred EEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcC--CCChhHHHhhCCC
Q 025648 18 FYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES--AIRPSILSKYGVH 64 (250)
Q Consensus 18 Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~--~~~~~l~~~~~I~ 64 (250)
||..+||.|......+.+. .....+..++. ....++.+.++++
T Consensus 2 ~YDg~C~lC~~~~~~l~~~----d~~~~l~~~~~~~~~~~~~~~~~~~~ 46 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR----DRGGRLRFVDIQSEPDQALLASYGIS 46 (114)
T ss_pred EECCCCHhHHHHHHHHHhc----CCCCCEEEEECCChhhhhHHHhcCcC
Confidence 7999999999998877776 22223333333 2334455666665
No 341
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=52.86 E-value=10 Score=30.75 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=33.7
Q ss_pred ccccccCCCeEEEEEE-cCCChhHHh----hhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhh
Q 025648 4 NMVHKNSHEYVAVLFY-ASWCPFSRN----FRPSFSVLSSLYSSIPHFAIEESAIRPSILSKY 61 (250)
Q Consensus 4 ~~~~~~~~~~vlV~Fy-a~wC~~C~~----~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~ 61 (250)
.+..+..+++++++|| +..-|-|.+ ++.-|+++.+.+..+.-+..++...++.+++++
T Consensus 83 sLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKq 145 (211)
T KOG0855|consen 83 SLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQ 145 (211)
T ss_pred eeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhc
Confidence 3445566778888888 223334444 456677777766555555555554455555553
No 342
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=51.73 E-value=19 Score=30.78 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=30.0
Q ss_pred ccccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcC
Q 025648 6 VHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS 41 (250)
Q Consensus 6 ~~~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~ 41 (250)
+....+.++||-+-..+|..|...+..++.|..++.
T Consensus 21 m~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~ 56 (238)
T PF04592_consen 21 MLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLE 56 (238)
T ss_pred hhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHH
Confidence 445667889999999999999999999999886653
No 343
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=50.56 E-value=10 Score=28.52 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=19.4
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHHH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAFV 154 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f~ 154 (250)
.+|+ +||..|+.. .|.+..+...+.
T Consensus 24 ~Fwa--~wC~~C~~~--~p~l~~~~~~~~ 48 (131)
T cd03009 24 YFSA--SWCPPCRAF--TPKLVEFYEKLK 48 (131)
T ss_pred EEEC--CCChHHHHH--hHHHHHHHHHHH
Confidence 3466 899999998 888887766654
No 344
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=49.22 E-value=12 Score=29.59 Aligned_cols=24 Identities=0% Similarity=-0.197 Sum_probs=18.9
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAF 153 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f 153 (250)
.+|+ +||+.|+.. .|....+...+
T Consensus 31 ~FwA--sWCppCr~e--~P~L~~ly~~~ 54 (146)
T cd03008 31 FFGA--VVSPQCQLF--APKLKDFFVRL 54 (146)
T ss_pred EEEC--CCChhHHHH--HHHHHHHHHHH
Confidence 4477 899999998 88888776654
No 345
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=47.54 E-value=1.4 Score=42.35 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=26.2
Q ss_pred HHHHHHhhhhHHHHhhhHHHHHHHhhcccccccchHHHHhhHH--HHHHHhc
Q 025648 156 LRLVYIFLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTYLNRAI--QLFKTLN 205 (250)
Q Consensus 156 ~~~~i~~fPti~~f~~~~~~~~~~~~~~~~~~~~~~~y~gr~~--~~~~~l~ 205 (250)
+|+++.+-|++++|..++ +++....|... .+.++|+
T Consensus 528 k~~~~~G~P~~~ff~~~g--------------~e~~~l~gf~~a~~~~~~l~ 565 (569)
T COG4232 528 KRLGVFGVPTYLFFGPQG--------------SEPEILTGFLTADAFLEHLE 565 (569)
T ss_pred HHcCCCCCCEEEEECCCC--------------CcCcCCcceecHHHHHHHHH
Confidence 999999999999999666 45555666442 5555554
No 346
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=47.07 E-value=11 Score=30.96 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=20.7
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAF 153 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f 153 (250)
.+|+ .||.+|++. .|...+++..|
T Consensus 75 ~Fwa--swCp~C~~e--~P~L~~l~~~~ 98 (181)
T PRK13728 75 LFMQ--GHCPYCHQF--DPVLKQLAQQY 98 (181)
T ss_pred EEEC--CCCHhHHHH--HHHHHHHHHHc
Confidence 4688 899999998 89999988875
No 347
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=46.67 E-value=1.4e+02 Score=23.30 Aligned_cols=88 Identities=9% Similarity=0.171 Sum_probs=56.7
Q ss_pred ccCCCeEEEEEEcCCCh----hHHhhh--HHHHHHHHHcCCCCEEEEEc-CCCC----------------hhHHHhhCCC
Q 025648 8 KNSHEYVAVLFYASWCP----FSRNFR--PSFSVLSSLYSSIPHFAIEE-SAIR----------------PSILSKYGVH 64 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~----~C~~~~--p~~e~la~~~~~~~~v~~~d-~~~~----------------~~l~~~~~I~ 64 (250)
.++.|+.+|+-..|.-+ +|++.. +.+-+.-+ .+.+..+-+- .+++ ....+.++..
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~ 95 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTD 95 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcC
Confidence 45678999999988863 566653 33333332 1233333321 1111 1245567899
Q ss_pred ccCeEEEE--eC---ceeEEEeCCCCHHHHHHHHHHhh
Q 025648 65 GFPTLFLL--NS---SMRVRYHGSRTLDSLVAFYSDVT 97 (250)
Q Consensus 65 ~~PTi~l~--~g---~~~~~~~G~~~~~~l~~fi~~~~ 97 (250)
.+|.+.++ .. ..+.+..|..++++++.-+....
T Consensus 96 ~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 96 QLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 99999888 22 46678899999999999887754
No 348
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=43.45 E-value=38 Score=23.70 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=21.5
Q ss_pred ccCeEEEE--eCceeEEEe-CCCCHHHHHHHHHHh
Q 025648 65 GFPTLFLL--NSSMRVRYH-GSRTLDSLVAFYSDV 96 (250)
Q Consensus 65 ~~PTi~l~--~g~~~~~~~-G~~~~~~l~~fi~~~ 96 (250)
.-|+++++ +|+.+.+.. ...+.++|.+|+.+.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 45899999 677666665 467999999999875
No 349
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=41.35 E-value=32 Score=25.77 Aligned_cols=22 Identities=5% Similarity=0.175 Sum_probs=17.3
Q ss_pred EEEEEcCCChhHHhhhHHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVL 36 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~l 36 (250)
+..|..|.|+.|++....+++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~ 23 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA 23 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 4578899999999988666643
No 350
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=41.21 E-value=35 Score=27.36 Aligned_cols=20 Identities=35% Similarity=0.770 Sum_probs=16.6
Q ss_pred hHHHhhCCCccCeEEEEeCc
Q 025648 56 SILSKYGVHGFPTLFLLNSS 75 (250)
Q Consensus 56 ~l~~~~~I~~~PTi~l~~g~ 75 (250)
+.+.++||.|+||+++.++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~ 179 (193)
T cd03025 160 KLARELGINGFPTLVLEDDN 179 (193)
T ss_pred HHHHHcCCCccCEEEEEeCC
Confidence 56778899999999999544
No 351
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=40.40 E-value=32 Score=22.96 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=39.6
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcC-CCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES-AIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 93 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~-~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi 93 (250)
+.+|+.+.|+.|++..-.++...-.|.. ..+...+. ...+.+.+......+|++.. +|.. -.....|.+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~-~~~~~~~~~~~~~~~~~~~P~~~vP~l~~-~g~~------l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYEL-VPVDLTKGEHKSPEHLARNPFGQIPALED-GDLK------LFESRAITRYL 73 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEE-EEeCccccccCCHHHHhhCCCCCCCEEEE-CCEE------EEcHHHHHHHH
Confidence 4566677799999988776665433311 11111111 12244555556678898753 3321 23556677776
Q ss_pred HH
Q 025648 94 SD 95 (250)
Q Consensus 94 ~~ 95 (250)
.+
T Consensus 74 ~~ 75 (76)
T cd03053 74 AE 75 (76)
T ss_pred hh
Confidence 54
No 352
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=40.06 E-value=24 Score=23.84 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=32.0
Q ss_pred EEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcC---CCChhHHHhhCCCccCeEEEEeC
Q 025648 16 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES---AIRPSILSKYGVHGFPTLFLLNS 74 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~---~~~~~l~~~~~I~~~PTi~l~~g 74 (250)
..|+.+.|+.|++.+-.+++..-.| ..+.++.. ...+++.+.-.-..+|++.. +|
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~~---e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~-~g 59 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLRC---EEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH-GD 59 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCCC---EEEEecCCcCccCCHHHHHhCcCCCCCEEEE-CC
Confidence 5688889999988876555543333 12222211 12334555555678999853 44
No 353
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=37.90 E-value=2.1e+02 Score=22.96 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=24.7
Q ss_pred cCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC
Q 025648 9 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS 42 (250)
Q Consensus 9 ~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~ 42 (250)
-.++++||.=.|+-|+.-.+.. .++.|.+.|.+
T Consensus 23 ~~GkVlLIVNtASkCGfTpQYe-gLe~Ly~ky~~ 55 (162)
T COG0386 23 YKGKVLLIVNTASKCGFTPQYE-GLEALYKKYKD 55 (162)
T ss_pred hCCcEEEEEEcccccCCcHhHH-HHHHHHHHHhh
Confidence 3578899999999999766443 56677777765
No 354
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=36.09 E-value=75 Score=20.92 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=30.9
Q ss_pred EEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeC
Q 025648 16 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNS 74 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g 74 (250)
..|+.+.|++|.+.+-.++...... ....+.++.....+++.+...-..+|++..-+|
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g 59 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVLDDG 59 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEECCC
Confidence 3577888999998876665521111 112222222222345555555667897764333
No 355
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=35.47 E-value=14 Score=29.59 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=16.7
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHH
Q 025648 126 EESCPFSWARSPENLLQQETYLALAT 151 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~ 151 (250)
.+|+ +||.+|+.. .|.+.+++.
T Consensus 69 ~F~a--~wC~~C~~~--~p~l~~l~~ 90 (173)
T TIGR00385 69 NVWA--SWCPPCRAE--HPYLNELAK 90 (173)
T ss_pred EEEC--CcCHHHHHH--HHHHHHHHH
Confidence 3466 899999998 787776654
No 356
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=35.06 E-value=16 Score=35.04 Aligned_cols=24 Identities=13% Similarity=-0.107 Sum_probs=19.0
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAF 153 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f 153 (250)
.+|+ +||++|+.. .|.+.+++..+
T Consensus 62 ~FWA--TWCppCk~e--mP~L~eL~~e~ 85 (521)
T PRK14018 62 KFWA--SWCPLCLSE--LGETEKWAQDA 85 (521)
T ss_pred EEEc--CCCHHHHHH--HHHHHHHHHHh
Confidence 4577 899999998 88888777644
No 357
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=34.25 E-value=14 Score=29.96 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=16.7
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHH
Q 025648 126 EESCPFSWARSPENLLQQETYLALAT 151 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~ 151 (250)
.+|+ +||++|+.. .|.+.+++.
T Consensus 74 ~Fwa--twC~~C~~e--~p~l~~l~~ 95 (185)
T PRK15412 74 NVWA--TWCPTCRAE--HQYLNQLSA 95 (185)
T ss_pred EEEC--CCCHHHHHH--HHHHHHHHH
Confidence 4467 899999988 777766643
No 358
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=31.11 E-value=61 Score=26.72 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=25.7
Q ss_pred hHHHhhCCCccCeEEEEe-CceeEEEeCCCCHHHHHHHH
Q 025648 56 SILSKYGVHGFPTLFLLN-SSMRVRYHGSRTLDSLVAFY 93 (250)
Q Consensus 56 ~l~~~~~I~~~PTi~l~~-g~~~~~~~G~~~~~~l~~fi 93 (250)
+-+.+.||.|+||+++=+ ++....|-|.-..+.+.+++
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 345667999999999852 23345777876666666554
No 359
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=30.67 E-value=58 Score=29.47 Aligned_cols=75 Identities=9% Similarity=0.100 Sum_probs=49.8
Q ss_pred ChhHHhhhHHHHHH----HHHcCC---CCEEEEEcCCCC---hhHHHhhCCCc--cCeEEEE-eCceeEEEeCCCCHHHH
Q 025648 23 CPFSRNFRPSFSVL----SSLYSS---IPHFAIEESAIR---PSILSKYGVHG--FPTLFLL-NSSMRVRYHGSRTLDSL 89 (250)
Q Consensus 23 C~~C~~~~p~~e~l----a~~~~~---~~~v~~~d~~~~---~~l~~~~~I~~--~PTi~l~-~g~~~~~~~G~~~~~~l 89 (250)
||.|-+..-.+.+. .+.+.+ -..+++.-|-.| ...-..+||.+ -|...+| +|+.+.+..+..-.++|
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel 343 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEEL 343 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHHH
Confidence 99998875544433 333433 346666555432 23334577764 5888888 88888888888888888
Q ss_pred HHHHHHhh
Q 025648 90 VAFYSDVT 97 (250)
Q Consensus 90 ~~fi~~~~ 97 (250)
...++++.
T Consensus 344 ~~~i~~~~ 351 (361)
T COG0821 344 EALIEAYA 351 (361)
T ss_pred HHHHHHHH
Confidence 88888765
No 360
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.64 E-value=43 Score=29.94 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhC----CCCCCCCCCCccccCCCCCccc-ccCCCCCCCCCcCCCChhhhcCchHHHHHHHHHH------
Q 025648 86 LDSLVAFYSDVTG----MNTASLDKISPDKVGKASNHEK-HNNTEEESCPFSWARSPENLLQQETYLALATAFV------ 154 (250)
Q Consensus 86 ~~~l~~fi~~~~~----~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~pw~~~ck~~~~~~~~~~lA~~f~------ 154 (250)
..+|.+-+.+..+ ..+..++++++.+++....... ..-.+....+.-.|.-|+.. .++|..+|..+.
T Consensus 23 ~s~ls~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~--~~Ef~iva~S~r~~~~~s 100 (331)
T KOG2603|consen 23 KSDLSNKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQA--EEEFQIVANSWRYNSPFS 100 (331)
T ss_pred hhHHHHHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhH--HHHHHHHHHHhhccCCCC
Confidence 3336666666655 2344568888888876433331 11122233434578899998 899999998873
Q ss_pred ------------------HHHHHHHhhhhHHHHh
Q 025648 155 ------------------LLRLVYIFLPTLLIFA 170 (250)
Q Consensus 155 ------------------~~~~~i~~fPti~~f~ 170 (250)
-+.+++..-|++..|.
T Consensus 101 n~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~ 134 (331)
T KOG2603|consen 101 NGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLFS 134 (331)
T ss_pred CcceEEEEEEeccccHHHHHHhcccCCCeEEEeC
Confidence 2888999999999994
No 361
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=30.59 E-value=58 Score=24.64 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=18.1
Q ss_pred EEEEEcCCChhHHhhhHHHHHH
Q 025648 15 AVLFYASWCPFSRNFRPSFSVL 36 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~l 36 (250)
+..|+.|.|..|++....+++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5678899999999998777753
No 362
>PRK10387 glutaredoxin 2; Provisional
Probab=29.20 E-value=2.1e+02 Score=23.00 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=40.9
Q ss_pred EEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHHh
Q 025648 17 LFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDV 96 (250)
Q Consensus 17 ~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi~~~ 96 (250)
.++.+.||+|.+.+-.++...-.|. .+.+ +...........+...+|+++.-+|.. -.+...|..++.+.
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~y~---~~~~-~~~~~~~~~~~~p~~~VPvL~~~~g~~------l~eS~aI~~yL~~~ 72 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIPVE---LIVL-ANDDEATPIRMIGQKQVPILQKDDGSY------MPESLDIVHYIDEL 72 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCCeE---EEEc-CCCchhhHHHhcCCcccceEEecCCeE------ecCHHHHHHHHHHh
Confidence 4567789999998876665533331 1112 222222222222345688885423322 24678999999987
Q ss_pred hCC
Q 025648 97 TGM 99 (250)
Q Consensus 97 ~~~ 99 (250)
.+.
T Consensus 73 ~~~ 75 (210)
T PRK10387 73 DGK 75 (210)
T ss_pred CCC
Confidence 753
No 363
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=27.86 E-value=58 Score=24.15 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=16.9
Q ss_pred EEEEcCCChhHHhhhHHHHHH
Q 025648 16 VLFYASWCPFSRNFRPSFSVL 36 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~l 36 (250)
..|+.|.|..|++....+++-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~ 22 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA 22 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC
Confidence 568899999999988666644
No 364
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=26.76 E-value=62 Score=24.10 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=17.4
Q ss_pred EEEEcCCChhHHhhhHHHHHH
Q 025648 16 VLFYASWCPFSRNFRPSFSVL 36 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~l 36 (250)
..|+.|.|..|++....+++-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~ 22 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK 22 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC
Confidence 468899999999988777753
No 365
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=26.71 E-value=97 Score=28.11 Aligned_cols=52 Identities=8% Similarity=0.263 Sum_probs=41.4
Q ss_pred EEEcCCCChhHHHhhCCCccCeEEEE---eCceeEEEeCCCCHHHHHHHHHHhhC
Q 025648 47 AIEESAIRPSILSKYGVHGFPTLFLL---NSSMRVRYHGSRTLDSLVAFYSDVTG 98 (250)
Q Consensus 47 ~~~d~~~~~~l~~~~~I~~~PTi~l~---~g~~~~~~~G~~~~~~l~~fi~~~~~ 98 (250)
..+|..+...+..-|.+..+|.+.++ .|+.+.+..|...+++|+.-+.+.+.
T Consensus 136 V~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 136 VLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred EeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 34567777889999999999988888 57888888888888777777666653
No 366
>PTZ00256 glutathione peroxidase; Provisional
Probab=26.53 E-value=22 Score=28.79 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=24.5
Q ss_pred CCCCcCCCChhhhcCchHHHHHHHHHHHHHHHHHhhh
Q 025648 128 SCPFSWARSPENLLQQETYLALATAFVLLRLVYIFLP 164 (250)
Q Consensus 128 ~~~~pw~~~ck~~~~~~~~~~lA~~f~~~~~~i~~fP 164 (250)
++ .||+.|..- .|.+.++...|....+.|.+++
T Consensus 49 ~a--twCp~C~~e--~p~l~~l~~~~~~~gv~vv~vs 81 (183)
T PTZ00256 49 VA--CKCGLTSDH--YTQLVELYKQYKSQGLEILAFP 81 (183)
T ss_pred EC--CCCCchHHH--HHHHHHHHHHHhhCCcEEEEEe
Confidence 56 899999987 7888888888865545454544
No 367
>KOG3445 consensus Mitochondrial/chloroplast ribosomal protein 36a [Translation, ribosomal structure and biogenesis]
Probab=26.22 E-value=1.8e+02 Score=22.77 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=48.0
Q ss_pred EEEcCCChhHHhhhHH----HHHHHHHcCCCCEEEEEcCCCChhHHHhhCCCccCeEEEE--eCceeEEEeCCCCHHHHH
Q 025648 17 LFYASWCPFSRNFRPS----FSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL--NSSMRVRYHGSRTLDSLV 90 (250)
Q Consensus 17 ~Fya~wC~~C~~~~p~----~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~--~g~~~~~~~G~~~~~~l~ 90 (250)
.=|-.|-+.++-|+.. +.+++++.+++.+...... -..|.+.-. ||.+...-.-.++.+++.
T Consensus 28 ~sfCnwggSSrGmR~Fle~~L~~~a~enP~v~i~v~~rr------------g~hP~lraeY~NGre~vicvrnms~eevs 95 (145)
T KOG3445|consen 28 VSFCNWGGSSRGMREFLESELPDLARENPGVVIYVEPRR------------GQHPLLRAEYLNGRERVICVRNMSQEEVS 95 (145)
T ss_pred EEEecCCCccHHHHHHHHHHHHHHHhhCCCeEEEEeccC------------CCCceEEEEecCCceEEEeeccCCHHHHH
Confidence 3456677777777654 5667788887655443221 236777555 888888887889999999
Q ss_pred HHHHHhhC
Q 025648 91 AFYSDVTG 98 (250)
Q Consensus 91 ~fi~~~~~ 98 (250)
+.+.....
T Consensus 96 ~~~~lL~d 103 (145)
T KOG3445|consen 96 KKATLLRD 103 (145)
T ss_pred HHHHHHhc
Confidence 98877654
No 368
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=25.66 E-value=60 Score=29.59 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=43.8
Q ss_pred ChhHHhhhHHHHHHHHH----cCC---CCEEEEEcCCCCh---hHHHhhCCC-ccCe-EEEE-eCceeEEE-eCCCCHHH
Q 025648 23 CPFSRNFRPSFSVLSSL----YSS---IPHFAIEESAIRP---SILSKYGVH-GFPT-LFLL-NSSMRVRY-HGSRTLDS 88 (250)
Q Consensus 23 C~~C~~~~p~~e~la~~----~~~---~~~v~~~d~~~~~---~l~~~~~I~-~~PT-i~l~-~g~~~~~~-~G~~~~~~ 88 (250)
||.|-+..=.+++++++ +.+ -..+++.-|..|- .--..|||. +-|- ..+| +|+.+.+. ....-.+.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 99998876555555543 333 4688888887652 122457776 4444 7777 78888887 66777788
Q ss_pred HHHHHHHh
Q 025648 89 LVAFYSDV 96 (250)
Q Consensus 89 l~~fi~~~ 96 (250)
|.+.|+++
T Consensus 351 L~~~I~~~ 358 (359)
T PF04551_consen 351 LIELIEEH 358 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88888765
No 369
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=25.52 E-value=3e+02 Score=20.75 Aligned_cols=88 Identities=18% Similarity=0.122 Sum_probs=52.7
Q ss_pred CCCeEEEEEEcCC-ChhHHhhhHHHHHHHHHcC------C----CCEEEEEcCCCChhHHHhhCCC-ccCeEEEEe--Cc
Q 025648 10 SHEYVAVLFYASW-CPFSRNFRPSFSVLSSLYS------S----IPHFAIEESAIRPSILSKYGVH-GFPTLFLLN--SS 75 (250)
Q Consensus 10 ~~~~vlV~Fya~w-C~~C~~~~p~~e~la~~~~------~----~~~v~~~d~~~~~~l~~~~~I~-~~PTi~l~~--g~ 75 (250)
+..+.+|.|-..- =+.-+...+.++.+++.+- + +.++...+.+....|..--+.. ..|.+++++ .+
T Consensus 13 n~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDip~r 92 (116)
T cd03071 13 NEGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSAR 92 (116)
T ss_pred cCCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCccCceEEEEecccc
Confidence 3456777777433 3357777777877776531 1 3444444544445555555554 578888882 22
Q ss_pred eeEEE-eCCCCHHHHHHHHHHhh
Q 025648 76 MRVRY-HGSRTLDSLVAFYSDVT 97 (250)
Q Consensus 76 ~~~~~-~G~~~~~~l~~fi~~~~ 97 (250)
..... ....+.+.+.+|+.+.+
T Consensus 93 ~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 93 AKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred ceEeCchHhcCHHHHHHHHHHhh
Confidence 22221 14678999999998764
No 370
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=25.44 E-value=89 Score=21.34 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=35.2
Q ss_pred cCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHH---HhhCCCccCeEEEEe-CceeEEEeCCCCHHHHHHHHHH
Q 025648 20 ASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSIL---SKYGVHGFPTLFLLN-SSMRVRYHGSRTLDSLVAFYSD 95 (250)
Q Consensus 20 a~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~---~~~~I~~~PTi~l~~-g~~~~~~~G~~~~~~l~~fi~~ 95 (250)
-+||++|.+.+-.+....-.|. .+.+ +........ ..-.-..+|++.. + |.. -.+...|.+++.+
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~~---~~~~-~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~------l~eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEYK---TVPV-EFPDIPPILGELTSGGFYTVPVIVD-GSGEV------IGDSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCCe---EEEe-cCCCcccccccccCCCCceeCeEEE-CCCCE------EeCHHHHHHHHHH
Confidence 4789999998877765433332 1111 211111111 1123457888753 4 332 2366788888876
Q ss_pred h
Q 025648 96 V 96 (250)
Q Consensus 96 ~ 96 (250)
.
T Consensus 82 ~ 82 (84)
T cd03038 82 A 82 (84)
T ss_pred h
Confidence 5
No 371
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.04 E-value=3.5e+02 Score=22.98 Aligned_cols=73 Identities=15% Similarity=0.273 Sum_probs=51.4
Q ss_pred EEEcCCChhHHhhhHHHHHHHHHcCC-CCEEEEEcCCCChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHH
Q 025648 17 LFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSD 95 (250)
Q Consensus 17 ~Fya~wC~~C~~~~p~~e~la~~~~~-~~~v~~~d~~~~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi~~ 95 (250)
.|.-..|..|..+...+++ ++ ...+.+++...-+.++-+-+|-++|.+++ +|+. -|.++.++++|...+..
T Consensus 15 I~~HktC~ssy~Lf~~L~n-----kgll~~Vkii~a~~p~f~~~~~~V~SvP~Vf~-DGel--~~~dpVdp~~ies~~~G 86 (265)
T COG5494 15 IFTHKTCVSSYMLFEYLEN-----KGLLGKVKIIDAELPPFLAFEKGVISVPSVFI-DGEL--VYADPVDPEEIESILSG 86 (265)
T ss_pred EEEecchHHHHHHHHHHHh-----cCCCCCceEEEcCCChHHHhhcceeecceEEE-cCeE--EEcCCCCHHHHHHHHcC
Confidence 3556678888776655542 23 34667777777777888888999999876 6654 45678899999888776
Q ss_pred hh
Q 025648 96 VT 97 (250)
Q Consensus 96 ~~ 97 (250)
..
T Consensus 87 ~~ 88 (265)
T COG5494 87 QV 88 (265)
T ss_pred cc
Confidence 53
No 372
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.92 E-value=91 Score=23.12 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=28.5
Q ss_pred cCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhC-CCccCeE-EEE-eCc
Q 025648 20 ASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYG-VHGFPTL-FLL-NSS 75 (250)
Q Consensus 20 a~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~-I~~~PTi-~l~-~g~ 75 (250)
.|-|+++.+....+..... ..+..+|.=.++++.+... ....||+ -+| +|+
T Consensus 27 ~P~CGFS~~~vqiL~~~g~-----v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GE 80 (105)
T COG0278 27 FPQCGFSAQAVQILSACGV-----VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGE 80 (105)
T ss_pred CCCCCccHHHHHHHHHcCC-----cceeEEeeccCHHHHhccHhhcCCCCCceeeECCE
Confidence 5789999888777765542 2333334334566654433 2356665 233 764
No 373
>PLN02412 probable glutathione peroxidase
Probab=24.81 E-value=20 Score=28.57 Aligned_cols=34 Identities=9% Similarity=0.027 Sum_probs=25.4
Q ss_pred CCCCCcCCCChhhhcCchHHHHHHHHHHHHHHHHHhhh
Q 025648 127 ESCPFSWARSPENLLQQETYLALATAFVLLRLVYIFLP 164 (250)
Q Consensus 127 ~~~~~pw~~~ck~~~~~~~~~~lA~~f~~~~~~i~~fP 164 (250)
+|+ +||+.|..- .|.+.++...|....+.|.+.+
T Consensus 36 f~a--~~C~~c~~e--~~~l~~l~~~~~~~g~~vvgv~ 69 (167)
T PLN02412 36 NVA--SKCGLTDSN--YKELNVLYEKYKEQGFEILAFP 69 (167)
T ss_pred EeC--CCCCChHHH--HHHHHHHHHHHhhCCcEEEEec
Confidence 466 899999975 7888888888876656555554
No 374
>PTZ00056 glutathione peroxidase; Provisional
Probab=24.23 E-value=18 Score=29.94 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=25.7
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHHHHHHHHHHhhh
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAFVLLRLVYIFLP 164 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f~~~~~~i~~fP 164 (250)
.+|+ .||+.|..- .|...++...|....+.|-+++
T Consensus 45 ~fwA--swC~~C~~e--~p~L~~l~~~~~~~g~~vvgv~ 79 (199)
T PTZ00056 45 TNSA--SKCGLTKKH--VDQMNRLHSVFNPLGLEILAFP 79 (199)
T ss_pred EEEC--CCCCChHHH--HHHHHHHHHHHhcCceEEEEec
Confidence 3466 899999876 7888888888765555555554
No 375
>PF13728 TraF: F plasmid transfer operon protein
Probab=24.16 E-value=20 Score=30.16 Aligned_cols=40 Identities=18% Similarity=0.076 Sum_probs=32.2
Q ss_pred cCCCChhhhcCchHHHHHHHHHH-------------------------HHHHHHHhhhhHHHHhhhH
Q 025648 132 SWARSPENLLQQETYLALATAFV-------------------------LLRLVYIFLPTLLIFAQFT 173 (250)
Q Consensus 132 pw~~~ck~~~~~~~~~~lA~~f~-------------------------~~~~~i~~fPti~~f~~~~ 173 (250)
+.|..|+.+ .|....+|..+- ..+++|..+|++.+....+
T Consensus 130 ~~C~~C~~~--~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 130 SDCPYCQQQ--APILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNT 194 (215)
T ss_pred CCCchhHHH--HHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCC
Confidence 678999999 999999999872 2678888888888875533
No 376
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=23.73 E-value=90 Score=28.48 Aligned_cols=74 Identities=9% Similarity=0.060 Sum_probs=44.4
Q ss_pred ChhHHhhhHHH----HHHHHHcCC---CCEEEEEcCCCC---hhHHHhhCCCccCe-EEEE-eCceeEEEeCCCCHHHHH
Q 025648 23 CPFSRNFRPSF----SVLSSLYSS---IPHFAIEESAIR---PSILSKYGVHGFPT-LFLL-NSSMRVRYHGSRTLDSLV 90 (250)
Q Consensus 23 C~~C~~~~p~~----e~la~~~~~---~~~v~~~d~~~~---~~l~~~~~I~~~PT-i~l~-~g~~~~~~~G~~~~~~l~ 90 (250)
||-|.+..-.. .++.+.|.+ -..+++.-|..+ ..--..+||.+-+. ..+| +|+.+....+..-.++|.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~ 350 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELE 350 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHH
Confidence 77777764443 344444544 357777777421 23345678876555 4556 788877776665566666
Q ss_pred HHHHHh
Q 025648 91 AFYSDV 96 (250)
Q Consensus 91 ~fi~~~ 96 (250)
+.|++.
T Consensus 351 ~~i~~~ 356 (360)
T PRK00366 351 AEIEAY 356 (360)
T ss_pred HHHHHH
Confidence 666554
No 377
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=23.38 E-value=17 Score=31.09 Aligned_cols=35 Identities=9% Similarity=-0.011 Sum_probs=25.3
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHHHHHHHHHHhhh
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAFVLLRLVYIFLP 164 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f~~~~~~i~~fP 164 (250)
.+|+ +||+.|... .|...++...|....+.|.+++
T Consensus 105 ~FwA--swCp~c~~e--~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 105 VNVA--SKCGLTSSN--YSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred EEEc--CCCcchHHH--HHHHHHHHHHHhcCCcEEEEEe
Confidence 4467 899999887 7888888887765444444444
No 378
>PF05364 SecIII_SopE_N: Salmonella type III secretion SopE effector N-terminus; InterPro: IPR016018 The type III secretion system of Gram-negative bacteria is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. Effector proteins secreted by the type III system do not possess a secretion signal, and are considered unique because of this. Salmonella spp. secrete an effector protein called SopE that is responsible for stimulating the reorganisation of the host cell actin cytoskeleton, and ruffling of the cellular membrane []. It acts as a guanyl-nucleotide-exchange factor on Rho-GTPase proteins such as Cdc42 and Rac. As it is imperative for the bacterium to revert the cell back to its "normal" state as quickly as possible, another tyrosine phosphatase effector called SptP reverses the actions brought about by SopE []. Recently, it has been found that SopE and its protein homologue SopE2 can activate different sets of Rho-GTPases in the host cell []. Far from being a redundant set of two similar type III effectors, they both act in unison to specifically activate different Rho-GTPase signalling cascades in the host cell during infection. This entry represents the N-terminal domain of SopE. The function of this domain is unknown.
Probab=23.33 E-value=22 Score=24.04 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=14.6
Q ss_pred eecCCC-CCCCCcccccccCC
Q 025648 231 VSIGDA-SSSRGACVNECHFH 250 (250)
Q Consensus 231 ~~~~~~-~~~~~~~~~~~~~~ 250 (250)
++|-|. |+-++.-.++.|||
T Consensus 46 ~~LserF~~hkqTe~~athfH 66 (74)
T PF05364_consen 46 SSLSERFSSHKQTESSATHFH 66 (74)
T ss_pred ccchHHHHHhhccCCCccccc
Confidence 455565 66688888888888
No 379
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=23.27 E-value=2.9e+02 Score=19.80 Aligned_cols=69 Identities=10% Similarity=0.142 Sum_probs=39.8
Q ss_pred cCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCC-ChhHHHhhCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHHhhC
Q 025648 20 ASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI-RPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTG 98 (250)
Q Consensus 20 a~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~-~~~l~~~~~I~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi~~~~~ 98 (250)
...|++|++.+=.+++..-.| ..+.+ |... -..+.+..-...+|++.- +|.. -.+...|.++|++...
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~y---e~~~v-d~~~~p~~~~~~nP~g~vPvL~~-~~~~------i~eS~~I~eYLde~~~ 87 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVF---NVTTV-DMKRKPEDLKDLAPGTQPPFLLY-NGEV------KTDNNKIEEFLEETLC 87 (91)
T ss_pred CCCChhHHHHHHHHHHCCCce---EEEEe-CCCCCCHHHHHhCCCCCCCEEEE-CCEE------ecCHHHHHHHHHHHcc
Confidence 367999999887666542222 12223 3223 344544445567896652 3322 2467889999988754
Q ss_pred C
Q 025648 99 M 99 (250)
Q Consensus 99 ~ 99 (250)
+
T Consensus 88 ~ 88 (91)
T cd03061 88 P 88 (91)
T ss_pred C
Confidence 3
No 380
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=22.57 E-value=1.9e+02 Score=18.94 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=38.0
Q ss_pred EEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEEcCCCChhHHHhhCC-CccCeEEEEeCceeEEEeCCCCHHHHHHHHH
Q 025648 16 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGV-HGFPTLFLLNSSMRVRYHGSRTLDSLVAFYS 94 (250)
Q Consensus 16 V~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~d~~~~~~l~~~~~I-~~~PTi~l~~g~~~~~~~G~~~~~~l~~fi~ 94 (250)
.+++.+.|++|.+..-.++...-.|. .+.++.....+.+.+.... ..+|++.. +|.. -.+...|.++|+
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl~~~---~~~~~~~~~~~~~~~~~p~~~~vP~l~~-~~~~------l~eS~aI~~yL~ 71 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGVPYE---YVEEDLGNKSELLLASNPVHKKIPVLLH-NGKP------ICESLIIVEYID 71 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCCCCE---EEEeCcccCCHHHHHhCCCCCCCCEEEE-CCEE------eehHHHHHHHHH
Confidence 35667889999998876665433331 1222111122333332232 57998863 3321 235567777776
Q ss_pred Hh
Q 025648 95 DV 96 (250)
Q Consensus 95 ~~ 96 (250)
+.
T Consensus 72 ~~ 73 (74)
T cd03058 72 EA 73 (74)
T ss_pred hh
Confidence 53
No 381
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=22.44 E-value=1.7e+02 Score=21.76 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=30.8
Q ss_pred ccCCCeEEEEEEcCCChhHHhhhHHHHHHHHHcCC--CCEEEE
Q 025648 8 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAI 48 (250)
Q Consensus 8 ~~~~~~vlV~Fya~wC~~C~~~~p~~e~la~~~~~--~~~v~~ 48 (250)
.-.++++||.=.|+-|+.-. ....+++|.+.|.+ ..+++.
T Consensus 18 ~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaF 59 (108)
T PF00255_consen 18 KYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAF 59 (108)
T ss_dssp GGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEE
T ss_pred HcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEee
Confidence 34678899999999999888 66689999999874 444444
No 382
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=22.36 E-value=36 Score=35.67 Aligned_cols=24 Identities=4% Similarity=-0.128 Sum_probs=19.7
Q ss_pred CCCCCCcCCCChhhhcCchHHHHHHHHH
Q 025648 126 EESCPFSWARSPENLLQQETYLALATAF 153 (250)
Q Consensus 126 ~~~~~~pw~~~ck~~~~~~~~~~lA~~f 153 (250)
.+|+ .||++|+.. .|...+++..|
T Consensus 426 ~FWA--sWC~pC~~e--~P~L~~l~~~y 449 (1057)
T PLN02919 426 DFWT--YCCINCMHV--LPDLEFLEKKY 449 (1057)
T ss_pred EEEC--CcChhHHhH--hHHHHHHHHHc
Confidence 4578 899999988 88888887765
No 383
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=20.68 E-value=2.2e+02 Score=18.87 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=25.7
Q ss_pred ccccCCCeEEEEEE-cCCChhHHhhhHHHHHHHHHcCCCCEE
Q 025648 6 VHKNSHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSSIPHF 46 (250)
Q Consensus 6 ~~~~~~~~vlV~Fy-a~wC~~C~~~~p~~e~la~~~~~~~~v 46 (250)
+....++..+..-. .|+|+....+....++.....+++..+
T Consensus 29 i~i~~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V 70 (72)
T PF01883_consen 29 ISIEGGKVSVSLELPTPACPAAEPLREEIREALKALPGVKSV 70 (72)
T ss_dssp EEECTCEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEE
T ss_pred EEEECCEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceE
Confidence 34455555444444 488888888888888877777775544
No 384
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=20.57 E-value=3.4e+02 Score=22.60 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=48.9
Q ss_pred EEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEE----cC----C---------CChhHHHhhCCCc--cCeEEEEeCc
Q 025648 15 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE----ES----A---------IRPSILSKYGVHG--FPTLFLLNSS 75 (250)
Q Consensus 15 lV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~----d~----~---------~~~~l~~~~~I~~--~PTi~l~~g~ 75 (250)
+=+|.+..|..|--....+.++++. ++++.++.. |. | .++..+..++..+ +|.+++ ||.
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV-nG~ 79 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV-NGR 79 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE-TTT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE-CCe
Confidence 3468889999999999999999998 476666552 11 0 1134556666655 566665 776
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCC
Q 025648 76 MRVRYHGSRTLDSLVAFYSDVTGM 99 (250)
Q Consensus 76 ~~~~~~G~~~~~~l~~fi~~~~~~ 99 (250)
.- ....+..++..-|.+....
T Consensus 80 ~~---~~g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 80 EH---RVGSDRAAVEAAIQAARAR 100 (202)
T ss_dssp EE---EETT-HHHHHHHHHHHHHT
T ss_pred ee---eeccCHHHHHHHHHHhhcc
Confidence 53 3356777888888776554
No 385
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=20.16 E-value=80 Score=27.77 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=47.3
Q ss_pred eEEEEEEcCCChhHHhhhHHHHHHHHHcCCCCEEEEE---c--CCCChhHHHhhCCC-ccCeEEEE-eCceeEEEeCCCC
Q 025648 13 YVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE---E--SAIRPSILSKYGVH-GFPTLFLL-NSSMRVRYHGSRT 85 (250)
Q Consensus 13 ~vlV~Fya~wC~~C~~~~p~~e~la~~~~~~~~v~~~---d--~~~~~~l~~~~~I~-~~PTi~l~-~g~~~~~~~G~~~ 85 (250)
...|.-|+..|..=..+.|.-++ .+-.+++++= | ...++.+..+|... +.|++..+ -|.+ ..|.+..+
T Consensus 76 t~~IR~Y~sDCn~le~v~pAa~~----~g~kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGnE-al~r~~~t 150 (305)
T COG5309 76 THSIRTYGSDCNTLENVLPAAEA----SGFKVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGNE-ALNRNDLT 150 (305)
T ss_pred CceEEEeeccchhhhhhHHHHHh----cCceEEEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEechh-hhhcCCCC
Confidence 34788899877765555554333 2212334431 1 11233566666654 57777666 3333 34678899
Q ss_pred HHHHHHHHHHhh
Q 025648 86 LDSLVAFYSDVT 97 (250)
Q Consensus 86 ~~~l~~fi~~~~ 97 (250)
.++|.+.|.+..
T Consensus 151 asql~~~I~~vr 162 (305)
T COG5309 151 ASQLIEYIDDVR 162 (305)
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
Done!