BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025649
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 20/191 (10%)
Query: 13 YKSLRAGHSSICSSVQF--IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN 70
Y+ GH +S+ P +V+S D L+ W + R + ++GLP+
Sbjct: 5 YEGQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLE 64
Query: 71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRSKSTTKPLK 129
+ AFV +A L V A D + + N+++ + T L
Sbjct: 65 G----HSAFVSDVA------LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLS 114
Query: 130 GSQSTSKVNI----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS 185
+ S I RD + + + G + +H S G HT SCV FS + ++S
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKG-ECMHT-LSRGAHTDWVSCVRFSPSLD-APVIVS 171
Query: 186 GGNDKLVKVWD 196
GG D LVKVWD
Sbjct: 172 GGWDNLVKVWD 182
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI-SGGLDSKLVMWDFSKGR 55
++ +++ C++ R H+ S V+F P VI SGG D+ + +WD + GR
Sbjct: 134 RVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 72
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 235 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 291
Query: 201 QGVQ 204
+ VQ
Sbjct: 292 EIVQ 295
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 66
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 85
Query: 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 126
H + I D +N + V A D + + ++ S + K +
Sbjct: 86 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 130
Query: 127 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 131 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 184
Query: 182 YLISGGNDKLVKVWDCSRFQGVQT 205
++S D L ++WD + Q ++T
Sbjct: 185 LIVSSSYDGLCRIWDTASGQCLKT 208
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 74
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 237 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 293
Query: 201 QGVQ 204
+ VQ
Sbjct: 294 EIVQ 297
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 66
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 33 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 87
Query: 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 126
H + I D +N + V A D + + ++ S + K +
Sbjct: 88 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 132
Query: 127 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 133 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 186
Query: 182 YLISGGNDKLVKVWDCSRFQGVQT 205
++S D L ++WD + Q ++T
Sbjct: 187 LIVSSSYDGLCRIWDTASGQCLKT 210
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 253
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 31/205 (15%)
Query: 3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 62
Q + Q L +L+ GH+ + + P P ++S D ++MW ++ N+
Sbjct: 21 QSMMTEQMTLRGTLK-GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE----TNY 75
Query: 63 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 122
G+P+ H+ + D ++ + + DG + + ++ + R
Sbjct: 76 GIPQRALRG---------HSHFVSDV-VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV 125
Query: 123 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG---------GHTAAASCVAF 173
TK + V +I+ S K + L ++G H+ SCV F
Sbjct: 126 GHTKDVL------SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF 179
Query: 174 SMFGERGKYLISGGNDKLVKVWDCS 198
S ++S G DKLVKVW+ +
Sbjct: 180 SP-NSSNPIIVSCGWDKLVKVWNLA 203
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 78/200 (39%), Gaps = 31/200 (15%)
Query: 8 RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN 67
Q L +L+ GH+ + + P P ++S D ++MW ++ N+G+P+
Sbjct: 3 EQMTLRGTLK-GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE----TNYGIPQR 57
Query: 68 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 127
H+ + D ++ + + DG + + ++ + R TK
Sbjct: 58 ALRG---------HSHFVSDV-VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 107
Query: 128 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG---------GHTAAASCVAFSMFGE 178
+ V +I+ S K + L ++G H+ SCV FS
Sbjct: 108 VL------SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP-NS 160
Query: 179 RGKYLISGGNDKLVKVWDCS 198
++S G DKLVKVW+ +
Sbjct: 161 SNPIIVSCGWDKLVKVWNLA 180
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 50
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 213 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269
Query: 201 QGVQ 204
+ VQ
Sbjct: 270 EIVQ 273
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 66
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 63
Query: 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 126
H + I D +N + V A D + + ++ S + K +
Sbjct: 64 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 108
Query: 127 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 162
Query: 182 YLISGGNDKLVKVWDCSRFQGVQT 205
++S D L ++WD + Q ++T
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKT 186
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 50
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 213 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269
Query: 201 QGVQ 204
+ VQ
Sbjct: 270 EIVQ 273
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 66
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 63
Query: 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 126
H + I D +N + V A D + + ++ S + K +
Sbjct: 64 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 108
Query: 127 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 162
Query: 182 YLISGGNDKLVKVWDCSRFQGVQT 205
++S D L ++WD + Q ++T
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKT 186
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 46
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 209 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 265
Query: 201 QGVQ 204
+ VQ
Sbjct: 266 EIVQ 269
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 66
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 5 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 59
Query: 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 126
H + I D +N + V A D + + ++ S + K +
Sbjct: 60 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 104
Query: 127 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 105 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 158
Query: 182 YLISGGNDKLVKVWDCSRFQGVQT 205
++S D L ++WD + Q ++T
Sbjct: 159 LIVSSSYDGLCRIWDTASGQCLKT 182
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 51
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 214 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 270
Query: 201 QGVQ 204
+ VQ
Sbjct: 271 EIVQ 274
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 66
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 10 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTIS----- 63
Query: 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 126
H + I D +N + V A D + + ++ S + K +
Sbjct: 64 -------------GHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 109
Query: 127 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 110 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 163
Query: 182 YLISGGNDKLVKVWDCSRFQGVQT 205
++S D L ++WD + Q ++T
Sbjct: 164 LIVSSSYDGLCRIWDTASGQCLKT 187
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 230
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 56
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 219 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Query: 201 QGVQ 204
+ VQ
Sbjct: 276 EIVQ 279
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 66
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTIS----- 68
Query: 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 126
H + I D +N + V A D + + ++ S + K +
Sbjct: 69 -------------GHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 114
Query: 127 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 168
Query: 182 YLISGGNDKLVKVWDCSRFQGVQT 205
++S D L ++WD + Q ++T
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKT 192
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 67
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 230 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 286
Query: 201 QGVQ 204
+ VQ
Sbjct: 287 EIVQ 290
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 66
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 26 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTIS----- 79
Query: 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 126
H + I D +N + V A D + + ++ S + K +
Sbjct: 80 -------------GHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 125
Query: 127 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 126 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 179
Query: 182 YLISGGNDKLVKVWDCSRFQGVQT 205
++S D L ++WD + Q ++T
Sbjct: 180 LIVSSSYDGLCRIWDTASGQCLKT 203
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 246
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 56
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 219 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Query: 201 QGVQ 204
+ VQ
Sbjct: 276 EIVQ 279
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 66
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 69
Query: 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 126
H + I D +N + V A D + + ++ S + K +
Sbjct: 70 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 114
Query: 127 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 168
Query: 182 YLISGGNDKLVKVWDCSRFQGVQT 205
++S D L ++WD + Q ++T
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKT 192
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 55
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 218 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 274
Query: 201 QGVQ 204
+ VQ
Sbjct: 275 EIVQ 278
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 66
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 14 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 68
Query: 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 126
H + I D +N + V A D + + ++ S + K +
Sbjct: 69 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 113
Query: 127 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 114 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 167
Query: 182 YLISGGNDKLVKVWDCSRFQGVQT 205
++S D L ++WD + Q ++T
Sbjct: 168 LIVSSSYDGLCRIWDTASGQCLKT 191
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 234
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 56
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 219 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Query: 201 QGVQ 204
+ VQ
Sbjct: 276 EIVQ 279
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 66
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 69
Query: 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 126
H + I D +N + V A D + + ++ S + K +
Sbjct: 70 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 114
Query: 127 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 168
Query: 182 YLISGGNDKLVKVWDCSRFQGVQT 205
++S D L ++WD + Q ++T
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKT 192
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 49
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 212 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 268
Query: 201 QGVQ 204
+ VQ
Sbjct: 269 EIVQ 272
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 66
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 8 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 62
Query: 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 126
H + I D +N + V A D + + ++ S + K +
Sbjct: 63 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 107
Query: 127 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 108 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 161
Query: 182 YLISGGNDKLVKVWDCSRFQGVQT 205
++S D L ++WD + Q ++T
Sbjct: 162 LIVSSSYDGLCRIWDTASGQCLKT 185
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 228
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 53
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 216 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Query: 201 QGVQ 204
+ VQ
Sbjct: 273 EIVQ 276
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 31/204 (15%)
Query: 7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 66
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTIS----- 65
Query: 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 126
H + I D +N + V A D + + ++ S + K +
Sbjct: 66 -------------GHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 111
Query: 127 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
+ + N+ D + I D GK L ++ H+ S V F+ G
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFN---RDGS 165
Query: 182 YLISGGNDKLVKVWDCSRFQGVQT 205
++S D L ++WD + Q ++T
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKT 189
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 53
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 216 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Query: 201 QGVQ 204
+ VQ
Sbjct: 273 EIVQ 276
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 31/204 (15%)
Query: 7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 66
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTIS----- 65
Query: 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 126
H + I D +N + V A D + + ++ S + K +
Sbjct: 66 -------------GHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 111
Query: 127 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
+ + N+ D + I D GK L ++ H+ S V F+ G
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFN---RDGS 165
Query: 182 YLISGGNDKLVKVWDCSRFQGVQT 205
++S D L ++WD + Q ++T
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKT 189
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 53
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D +V +W+
Sbjct: 216 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK 272
Query: 201 QGVQ 204
+ VQ
Sbjct: 273 EIVQ 276
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 31/193 (16%)
Query: 18 AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 77
AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 23 AGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG--------------- 66
Query: 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 137
H + I D +N + V A D + + ++ S + K + + +
Sbjct: 67 ---HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 138 NI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 192
N+ D + I D G L ++ H+ S V F G ++S D L
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLK---TLPAHSDPVSAV---HFNRDGSLIVSSSYDGLC 176
Query: 193 KVWDCSRFQGVQT 205
++WD + Q ++T
Sbjct: 177 RIWDTASGQCLKT 189
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 53
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D ++++ D S GK L + GH C+ + GK+++SG D +V +W+
Sbjct: 216 DNDLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK 272
Query: 201 QGVQ 204
+ VQ
Sbjct: 273 EIVQ 276
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKT 232
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 31/193 (16%)
Query: 18 AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 77
AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 23 AGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG--------------- 66
Query: 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 137
H + I D +N + V A D + + ++ S + K + + +
Sbjct: 67 ---HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 138 NI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 192
N+ D + I D G L ++ H+ S V F G ++S D L
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLK---TLPAHSDPVSAV---HFNRDGSLIVSSSYDGLC 176
Query: 193 KVWDCSRFQGVQT 205
++WD + Q ++T
Sbjct: 177 RIWDTASGQCLKT 189
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
L +++ GHT A S V FS GE +L + DKL+K+W
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGE---WLAASSADKLIKIW 53
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 216 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Query: 201 QGVQ 204
+ VQ
Sbjct: 273 EIVQ 276
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 66
++ + K AGH+ SSV+F P W S D + +W G+ K ++
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSA-DKLIKIWGAYDGKFEKTIS----- 65
Query: 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 126
H + I D +N + V A D + + ++ S + K +
Sbjct: 66 -------------GHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 111
Query: 127 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
+ + N+ D + I D GK L ++ H+ S V F+ G
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFN---RDGS 165
Query: 182 YLISGGNDKLVKVWDCSRFQGVQT 205
++S D L ++WD + Q ++T
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKT 189
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 140 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 199
+D + + D + + L + GH AA + V F KY++S D+ +KVW+ S
Sbjct: 231 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-----DKYIVSASGDRTIKVWNTST 285
Query: 200 FQGVQT 205
+ V+T
Sbjct: 286 CEFVRT 291
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 42/211 (19%)
Query: 14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVN-----FGLPEN 67
K + GH+ SV + + +I+G DS + +WD + G N +++ L N
Sbjct: 166 KRILTGHTG---SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN 222
Query: 68 NGNAGQCYNPAFVHAIAIPD-------------------ADMLDKTNKICVVAKGDGVVD 108
NG C +IA+ D +++D +K V A GD +
Sbjct: 223 NGMMVTCSKD---RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 279
Query: 109 VINIESELNISRSKSTTKPLKGSQSTSKVNIR---DAEMEILDQSGGKRLHLDYSVGGHT 165
V N + + + + Q ++ + D + + D G L + + GH
Sbjct: 280 VWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV---LEGHE 336
Query: 166 AAASCVAFSMFGERGKYLISGGNDKLVKVWD 196
C+ F K ++SG D +KVWD
Sbjct: 337 ELVRCIRFD-----NKRIVSGAYDGKIKVWD 362
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 139 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 198
+RD ++I D++ L + GHT + C+ + + +I+G +D V+VWD +
Sbjct: 150 LRDNTIKIWDKNT---LECKRILTGHTGSVLCLQYD-----ERVIITGSSDSTVRVWDVN 201
Query: 199 RFQGVQT 205
+ + T
Sbjct: 202 TGEMLNT 208
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D ++ I D +SV HTA +C++F+ + E L +G DK V +WD
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 306
Query: 201 Q 201
+
Sbjct: 307 K 307
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 62
++ D+ Q + KS A HSS + V P K +S G D ++++WD K +P ++F
Sbjct: 164 KVWDLSQKAVLKSYNA-HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF 222
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENN 68
GH SS Q++P + +I+G D V+WD + G+ I P +
Sbjct: 155 GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH 204
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 39/194 (20%)
Query: 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78
GHS S+ + P K W ++S D +L++W+ L +A + + P
Sbjct: 64 GHSGKVYSLDWTPEKNW-IVSASQDGRLIVWN------------ALTSQKTHAIKLHCPW 110
Query: 79 FVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQ--STS 135
+ P N V G D + N+ S+ + + ++ L G + ++S
Sbjct: 111 VMECAFAP--------NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASS 162
Query: 136 KVNIRDAEMEILDQSGGKRLHL-DYSVG------------GHTAAASCVAFSMFGERGKY 182
+ D E ++ SG + L D + G GHTA ++ S+
Sbjct: 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA--DVLSLSINSLNANM 220
Query: 183 LISGGNDKLVKVWD 196
ISG D V++WD
Sbjct: 221 FISGSCDTTVRLWD 234
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D ++ I D ++V HTA +C++F+ + E L +G DK V +WD
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 310
Query: 201 Q 201
+
Sbjct: 311 K 311
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D ++ I D ++V HTA +C++F+ + E L +G DK V +WD
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 312
Query: 201 Q 201
+
Sbjct: 313 K 313
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D ++ I D ++V HTA +C++F+ + E L +G DK V +WD
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 314
Query: 201 Q 201
+
Sbjct: 315 K 315
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 16/105 (15%)
Query: 100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD---QSGGKRLH 156
V G+G+VD+ ++ES+ + + + G Q+ +V +L +SG H
Sbjct: 151 VGLGNGLVDIYDVESQTKL-------RTMAGHQA--RVGCLSWNRHVLSSGSRSGAIHHH 201
Query: 157 ----LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 197
++ +G +S V + G L SGGND +V++WD
Sbjct: 202 DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA 246
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D ++ I D + V HTA +C++F+ + E L +G DK V +WD
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 308
Query: 201 Q 201
+
Sbjct: 309 K 309
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 74/199 (37%), Gaps = 40/199 (20%)
Query: 10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNG 69
H LY GH+S +V+ + V+SG D+ L +WD
Sbjct: 193 HTLY-----GHTS---TVRCMHLHEKRVVSGSRDATLRVWDIE----------------- 227
Query: 70 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLK 129
GQC + H A+ + + V D +V V + E+E + + T +
Sbjct: 228 -TGQCLHVLMGHVAAVR---CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 283
Query: 130 GSQSTSKVNIR---DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG 186
Q + D + + D G +H ++ GH + S + + L+SG
Sbjct: 284 SLQFDGIHVVSGSLDTSIRVWDVETGNCIH---TLTGHQSLTSGMEL-----KDNILVSG 335
Query: 187 GNDKLVKVWDCSRFQGVQT 205
D VK+WD Q +QT
Sbjct: 336 NADSTVKIWDIKTGQCLQT 354
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 46/191 (24%)
Query: 10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNG 69
+C +S AGH+ S+V P SGG D +++WD ++G+ K+ + L N+
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGK--KL--YSLEANSV 604
Query: 70 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLK 129
C++P N+ + A + + + ++E SKS + L
Sbjct: 605 IHALCFSP-----------------NRYWLCAATEHGIKIWDLE-------SKSIVEDL- 639
Query: 130 GSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND 189
KV+++ AE E D SG C + + + G L SG D
Sbjct: 640 ------KVDLK-AEAEKADNSG--------PAATKRKVIYCTSLN-WSADGSTLFSGYTD 683
Query: 190 KLVKVWDCSRF 200
+++VW R+
Sbjct: 684 GVIRVWGIGRY 694
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 24/58 (41%)
Query: 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK 58
M I D+RQ + SL H + V F P P + + D L WD S P K
Sbjct: 260 MLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEK 317
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
D ++ I D + V HTA +C++F+ + E L +G DK V +WD
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 308
Query: 201 Q 201
+
Sbjct: 309 K 309
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 183 LISGGNDKLVKVWDCSRFQ 201
+IS GNDK+VK W+ ++FQ
Sbjct: 169 IISAGNDKMVKAWNLNQFQ 187
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 183 LISGGNDKLVKVWDCSRFQ 201
+IS GNDK+VK W+ ++FQ
Sbjct: 169 IISAGNDKMVKAWNLNQFQ 187
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 183 LISGGNDKLVKVWDCSRFQ 201
+IS GNDK+VK W+ ++FQ
Sbjct: 169 IISAGNDKMVKAWNLNQFQ 187
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 183 LISGGNDKLVKVWDCSRFQ 201
+IS GNDK+VK W+ ++FQ
Sbjct: 169 IISAGNDKMVKAWNLNQFQ 187
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 183 LISGGNDKLVKVWDCSRFQ 201
+IS GNDK+VK W+ ++FQ
Sbjct: 163 IISAGNDKMVKAWNLNQFQ 181
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 135 SKVNIRDAEMEILDQSGG--------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG 186
S + +++M+IL SG + L S GH A C+ + E G +SG
Sbjct: 158 SACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP-SETGNTFVSG 216
Query: 187 GNDKLVKVWDCSRFQGVQ 204
G DK VWD Q VQ
Sbjct: 217 GCDKKAMVWDMRSGQCVQ 234
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 180 GKYLISGGNDKLVKVWDCSRFQG 202
G++L SGGND LV VW + +G
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGEG 275
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 76/195 (38%), Gaps = 35/195 (17%)
Query: 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI-------VNFGLPENNGNA 71
GH SSV +P ++S D + MW+ G K V P +G
Sbjct: 190 GHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248
Query: 72 -GQCYNPAFVHAIAIP----DADMLDKTNKI-CVVAKGDGVVDVINIESELNISRSKSTT 125
C N V + A++ + + + C+ + I SE S +K +
Sbjct: 249 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI---SEATGSETKKSG 305
Query: 126 KP----LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181
KP L GS RD +++ D S G L ++ GH V +F GK
Sbjct: 306 KPGPFLLSGS--------RDKTIKMWDVSTGMCL---MTLVGHDNWVRGV---LFHSGGK 351
Query: 182 YLISGGNDKLVKVWD 196
+++S +DK ++VWD
Sbjct: 352 FILSCADDKTLRVWD 366
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 177 GERGKYLISGGNDKLVKVWDCS 198
G+ G +L+SG DK +K+WD S
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVS 326
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 180 GKYLISGGNDKLVKVWDCSRFQG 202
G++L SGGND LV VW + +G
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGEG 264
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 176 FGERGKYLISGGNDKLVKVWD 196
F GK+L +G D+L+++WD
Sbjct: 131 FSPDGKFLATGAEDRLIRIWD 151
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 180 GKYLISGGNDKLVKVWDCSRFQG 202
G++L SGGND LV VW + +G
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGEG 184
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 183 LISGGNDKLVKVWDCSRFQ 201
+IS GNDK VK W+ ++FQ
Sbjct: 169 IISAGNDKXVKAWNLNQFQ 187
>pdb|4E4G|A Chain A, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|B Chain B, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|C Chain C, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|D Chain D, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|E Chain E, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|F Chain F, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|G Chain G, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|H Chain H, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
Length = 521
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 62 FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 103
+G NG QC+ A H I PDAD+ N + G
Sbjct: 257 YGTAAXNGKRAQCFGGAKNHXIIXPDADLDQAANALIGAGYG 298
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 92 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 151
DKT ++ G+ ++D+ E E+ S + + KV I D+ +
Sbjct: 643 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS-------AT 695
Query: 152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI--SGGNDKLVKVWDCSR 199
GK +H + H+ +C F+ + +L+ +G ND +K+WD ++
Sbjct: 696 GKLVH---TYDEHSEQVNCCHFT---NKSNHLLLATGSNDFFLKLWDLNQ 739
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 92 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 151
DKT ++ G+ ++D+ E E+ S + + KV I D+ +
Sbjct: 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS-------AT 688
Query: 152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI--SGGNDKLVKVWDCSR 199
GK +H + H+ +C F+ + +L+ +G ND +K+WD ++
Sbjct: 689 GKLVH---TYDEHSEQVNCCHFT---NKSNHLLLATGSNDFFLKLWDLNQ 732
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 163 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 204
GHT ASC+ S G + L +GG D V+ WD + +Q
Sbjct: 181 GHTDGASCIDISNDGTK---LWTGGLDNTVRSWDLREGRQLQ 219
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 61/187 (32%), Gaps = 59/187 (31%)
Query: 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78
GH V F P P SG LD + +W + P NF L GQ
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTL-----TTGQERGVN 188
Query: 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 138
+V +PD + + A D + + + + +KS L+G S
Sbjct: 189 YVDYYPLPDKPYM-------ITASDDLTIKIWDYQ-------TKSCVATLEGHMSN---- 230
Query: 139 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 198
V+F++F +ISG D +K+W+ S
Sbjct: 231 --------------------------------VSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Query: 199 RFQGVQT 205
++ +T
Sbjct: 259 TYKVEKT 265
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL 64
GH S S F P P +ISG D L +W+ S + K +N GL
Sbjct: 226 GHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 61/187 (32%), Gaps = 59/187 (31%)
Query: 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78
GH V F P P SG LD + +W + P NF L GQ
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTL-----TTGQERGVN 188
Query: 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 138
+V +PD + + A D + + + + +KS L+G S
Sbjct: 189 YVDYYPLPDKPYM-------ITASDDLTIKIWDYQ-------TKSCVATLEGHMSN---- 230
Query: 139 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 198
V+F++F +ISG D +K+W+ S
Sbjct: 231 --------------------------------VSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Query: 199 RFQGVQT 205
++ +T
Sbjct: 259 TYKVEKT 265
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL 64
GH S S F P P +ISG D L +W+ S + K +N GL
Sbjct: 226 GHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 33/165 (20%)
Query: 45 KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV-----HAIAI---PDADM---LDK 93
K+ +W+ + + +++V G A C +PA V + IA+ P A + DK
Sbjct: 46 KVTVWNRTLSKCDELVEHG-------ASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDK 98
Query: 94 TNKICVVAKGDGVVDVINIESELNISRSKSTT----KPLKGSQSTSKVNIRDAEMEILDQ 149
+ + +G G +D+ +++E ++ +++ T + ++G S SK D ++ IL
Sbjct: 99 GGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIIL-A 157
Query: 150 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV 194
+G K L + S AF + G+R YL GN +K+
Sbjct: 158 AGDKALFEE----------SIPAFDVLGKRSFYLGQVGNGAKMKL 192
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 196
+ Y+ H + + ++ S GKY+ +GG DK + +WD
Sbjct: 203 FQIRYTFKAHESNVNHLSIS---PNGKYIATGGKDKKLLIWD 241
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL 64
GH S S F P P +ISG D L +W+ S + K +N GL
Sbjct: 226 GHMSNVSFAVFHPTLPI-IISGSEDGTLKIWNSSTYKVEKTLNVGL 270
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 61/187 (32%), Gaps = 59/187 (31%)
Query: 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78
GH V F P P SG LD + +W + P NF L GQ
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTL-----TTGQERGVN 188
Query: 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 138
+V +PD + + A D + + + + +KS L+G S
Sbjct: 189 YVDYYPLPDKPYM-------ITASDDLTIKIWDYQ-------TKSCVATLEGHMSN---- 230
Query: 139 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 198
V+F++F +ISG D +K+W+ S
Sbjct: 231 --------------------------------VSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Query: 199 RFQGVQT 205
++ +T
Sbjct: 259 TYKVEKT 265
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL 64
GH S S F P P +ISG D L +W+ S + K +N GL
Sbjct: 226 GHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 61/187 (32%), Gaps = 59/187 (31%)
Query: 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78
GH V F P P SG LD + +W + P NF L GQ
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTL-----TTGQERGVN 188
Query: 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 138
+V +PD + + A D + + + + +KS L+G S
Sbjct: 189 YVDYYPLPDKPYM-------ITASDDLTIKIWDYQ-------TKSCVATLEGHMSN---- 230
Query: 139 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 198
V+F++F +ISG D +K+W+ S
Sbjct: 231 --------------------------------VSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Query: 199 RFQGVQT 205
++ +T
Sbjct: 259 TYKVEKT 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,171,106
Number of Sequences: 62578
Number of extensions: 281944
Number of successful extensions: 835
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 238
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)