Query 025649
Match_columns 250
No_of_seqs 435 out of 1391
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 08:02:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 8.4E-41 1.8E-45 239.1 18.1 219 1-248 138-479 (480)
2 KOG0315 G-protein beta subunit 100.0 3.5E-39 7.7E-44 218.7 22.2 215 2-250 63-288 (311)
3 KOG0272 U4/U6 small nuclear ri 100.0 9.7E-41 2.1E-45 241.1 15.3 216 1-249 198-417 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.7E-40 5.8E-45 238.9 14.1 214 1-248 242-458 (459)
5 KOG0263 Transcription initiati 100.0 7.4E-38 1.6E-42 241.8 18.1 201 11-249 442-648 (707)
6 KOG0271 Notchless-like WD40 re 100.0 2.8E-37 6E-42 221.2 18.2 213 12-250 107-397 (480)
7 KOG0279 G protein beta subunit 100.0 4.8E-35 1E-39 201.5 21.8 213 1-250 39-262 (315)
8 KOG0295 WD40 repeat-containing 100.0 3.8E-36 8.2E-41 213.8 16.5 217 1-250 131-364 (406)
9 KOG0279 G protein beta subunit 100.0 1.4E-34 3.1E-39 199.2 20.6 224 1-250 86-313 (315)
10 KOG0286 G-protein beta subunit 100.0 2.9E-34 6.3E-39 199.0 21.8 207 11-250 46-259 (343)
11 KOG0291 WD40-repeat-containing 100.0 1E-33 2.2E-38 218.4 22.4 214 2-250 332-550 (893)
12 KOG0281 Beta-TrCP (transducin 100.0 4.4E-35 9.5E-40 208.0 11.3 206 1-250 218-428 (499)
13 KOG0282 mRNA splicing factor [ 100.0 1.5E-33 3.2E-38 207.3 16.7 215 1-248 281-503 (503)
14 KOG0315 G-protein beta subunit 100.0 1E-31 2.2E-36 182.6 21.0 219 1-250 21-245 (311)
15 KOG0286 G-protein beta subunit 100.0 2.6E-31 5.7E-36 184.4 22.4 210 3-248 122-343 (343)
16 KOG0284 Polyadenylation factor 100.0 3.1E-33 6.7E-38 201.8 12.9 214 2-249 120-336 (464)
17 KOG0266 WD40 repeat-containing 100.0 6.8E-32 1.5E-36 211.3 21.3 215 1-249 226-453 (456)
18 KOG0284 Polyadenylation factor 100.0 2.5E-33 5.3E-38 202.3 12.0 214 1-249 161-379 (464)
19 KOG0263 Transcription initiati 100.0 3.2E-32 7E-37 210.8 18.4 216 13-250 371-607 (707)
20 KOG0266 WD40 repeat-containing 100.0 2.7E-31 5.9E-36 208.0 23.3 214 1-250 182-409 (456)
21 KOG0645 WD40 repeat protein [G 100.0 8.4E-31 1.8E-35 180.0 22.5 207 12-249 6-224 (312)
22 KOG0295 WD40 repeat-containing 100.0 4.8E-32 1E-36 193.0 16.4 212 2-249 174-405 (406)
23 KOG0292 Vesicle coat complex C 100.0 5.8E-32 1.3E-36 212.3 18.3 217 1-250 32-280 (1202)
24 KOG0273 Beta-transducin family 100.0 1.9E-31 4.1E-36 195.8 19.7 215 2-250 259-482 (524)
25 KOG0293 WD40 repeat-containing 100.0 9.8E-32 2.1E-36 194.6 16.9 218 1-249 247-512 (519)
26 KOG0276 Vesicle coat complex C 100.0 9.7E-32 2.1E-36 203.8 16.9 216 1-249 36-256 (794)
27 KOG0319 WD40-repeat-containing 100.0 1.6E-31 3.5E-36 205.6 17.4 222 1-248 388-617 (775)
28 KOG0275 Conserved WD40 repeat- 100.0 1.2E-32 2.6E-37 194.3 10.3 211 14-249 206-422 (508)
29 KOG0645 WD40 repeat protein [G 100.0 3.8E-30 8.3E-35 176.8 22.1 226 1-250 38-311 (312)
30 KOG0278 Serine/threonine kinas 100.0 6.3E-32 1.4E-36 183.9 12.9 211 1-249 82-296 (334)
31 KOG0285 Pleiotropic regulator 100.0 8E-31 1.7E-35 186.8 17.6 210 1-250 174-389 (460)
32 KOG0285 Pleiotropic regulator 100.0 4.5E-31 9.7E-36 188.1 15.7 205 10-250 141-348 (460)
33 PLN00181 protein SPA1-RELATED; 100.0 1E-29 2.2E-34 212.4 26.5 223 1-249 556-792 (793)
34 KOG0265 U5 snRNP-specific prot 100.0 2.2E-30 4.8E-35 180.3 18.1 213 1-248 113-336 (338)
35 KOG0277 Peroxisomal targeting 100.0 5.8E-31 1.3E-35 179.4 13.8 216 1-248 84-307 (311)
36 PTZ00420 coronin; Provisional 100.0 6.3E-29 1.4E-33 195.5 26.7 220 2-249 56-292 (568)
37 KOG0643 Translation initiation 100.0 1.3E-29 2.7E-34 174.1 19.4 201 15-250 5-220 (327)
38 KOG0319 WD40-repeat-containing 100.0 6.1E-30 1.3E-34 197.1 19.9 219 2-250 348-577 (775)
39 KOG0294 WD40 repeat-containing 100.0 2.4E-29 5.1E-34 176.4 18.8 214 1-250 64-281 (362)
40 KOG0318 WD40 repeat stress pro 100.0 1E-28 2.2E-33 183.9 23.2 230 1-250 213-560 (603)
41 KOG0265 U5 snRNP-specific prot 100.0 1.9E-29 4.2E-34 175.7 18.1 217 2-249 71-295 (338)
42 KOG0316 Conserved WD40 repeat- 100.0 1.2E-29 2.7E-34 171.3 16.6 209 1-249 40-256 (307)
43 KOG0281 Beta-TrCP (transducin 100.0 2.4E-30 5.1E-35 184.1 12.6 213 1-249 258-476 (499)
44 KOG0264 Nucleosome remodeling 100.0 2.5E-29 5.5E-34 183.7 18.0 234 2-250 149-404 (422)
45 KOG1407 WD40 repeat protein [F 100.0 4.4E-29 9.5E-34 170.9 18.0 211 1-247 43-258 (313)
46 cd00200 WD40 WD40 domain, foun 100.0 3.1E-28 6.7E-33 180.9 23.8 213 1-248 74-289 (289)
47 KOG0316 Conserved WD40 repeat- 100.0 1.3E-28 2.8E-33 166.4 18.8 207 2-247 83-296 (307)
48 KOG0313 Microtubule binding pr 100.0 7.4E-29 1.6E-33 177.8 18.3 225 1-248 170-416 (423)
49 PTZ00421 coronin; Provisional 100.0 7.2E-28 1.6E-32 188.4 25.5 209 15-250 70-290 (493)
50 KOG0282 mRNA splicing factor [ 100.0 7.1E-30 1.5E-34 188.0 13.4 215 1-250 238-462 (503)
51 KOG0643 Translation initiation 100.0 1.4E-28 3.1E-33 169.0 18.7 221 1-248 33-315 (327)
52 KOG0305 Anaphase promoting com 100.0 1.7E-28 3.7E-33 186.5 20.5 223 2-249 199-460 (484)
53 cd00200 WD40 WD40 domain, foun 100.0 1.3E-27 2.8E-32 177.6 24.5 215 1-250 32-249 (289)
54 KOG0296 Angio-associated migra 100.0 1.5E-27 3.3E-32 170.3 23.1 212 3-250 89-398 (399)
55 KOG0310 Conserved WD40 repeat- 100.0 3.5E-28 7.5E-33 179.3 20.3 209 2-246 92-305 (487)
56 KOG0283 WD40 repeat-containing 100.0 9.3E-29 2E-33 193.1 17.6 201 11-249 360-575 (712)
57 KOG0291 WD40-repeat-containing 100.0 1.2E-27 2.6E-32 185.2 21.9 222 2-250 374-612 (893)
58 KOG0277 Peroxisomal targeting 100.0 5.3E-28 1.1E-32 165.1 16.8 217 2-250 40-265 (311)
59 KOG0274 Cdc4 and related F-box 100.0 5.2E-28 1.1E-32 189.7 19.2 208 1-250 229-441 (537)
60 KOG1446 Histone H3 (Lys4) meth 100.0 9E-27 2E-31 163.5 23.3 208 1-247 81-300 (311)
61 KOG0306 WD40-repeat-containing 100.0 5.2E-28 1.1E-32 187.1 18.4 211 1-248 395-620 (888)
62 KOG0306 WD40-repeat-containing 100.0 8E-28 1.7E-32 186.1 19.3 219 2-249 436-663 (888)
63 PLN00181 protein SPA1-RELATED; 100.0 5.9E-27 1.3E-31 195.9 25.7 218 1-249 506-737 (793)
64 KOG0313 Microtubule binding pr 100.0 1.5E-27 3.2E-32 171.2 18.4 221 1-250 126-376 (423)
65 KOG0276 Vesicle coat complex C 100.0 1.7E-27 3.8E-32 180.9 19.2 211 2-246 79-295 (794)
66 KOG0273 Beta-transducin family 100.0 9.3E-27 2E-31 171.3 20.9 213 1-250 299-523 (524)
67 KOG0269 WD40 repeat-containing 100.0 5.2E-28 1.1E-32 187.5 14.8 180 2-250 112-296 (839)
68 KOG0640 mRNA cleavage stimulat 100.0 2.3E-27 4.9E-32 166.6 15.7 215 14-250 106-335 (430)
69 KOG0318 WD40 repeat stress pro 100.0 2.2E-26 4.7E-31 171.6 21.4 219 2-250 41-265 (603)
70 KOG0264 Nucleosome remodeling 100.0 6.9E-27 1.5E-31 171.1 18.3 213 19-250 122-347 (422)
71 KOG0268 Sof1-like rRNA process 100.0 1.9E-27 4E-32 169.9 15.0 220 2-249 91-344 (433)
72 KOG0289 mRNA splicing factor [ 100.0 2.1E-26 4.5E-31 168.0 20.4 214 1-248 242-460 (506)
73 KOG0973 Histone transcription 100.0 1E-26 2.2E-31 186.3 19.2 212 9-250 118-355 (942)
74 KOG0292 Vesicle coat complex C 100.0 7.2E-26 1.6E-30 178.4 21.6 213 1-249 74-320 (1202)
75 KOG0288 WD40 repeat protein Ti 99.9 3.5E-27 7.6E-32 170.9 13.0 209 1-248 242-459 (459)
76 KOG2096 WD40 repeat protein [G 99.9 3.2E-26 6.9E-31 161.3 17.2 219 14-247 80-399 (420)
77 KOG0274 Cdc4 and related F-box 99.9 4.7E-26 1E-30 178.8 20.1 205 1-250 272-482 (537)
78 KOG0296 Angio-associated migra 99.9 1.5E-25 3.2E-30 160.2 19.8 166 12-203 56-225 (399)
79 KOG0308 Conserved WD40 repeat- 99.9 2.5E-26 5.5E-31 175.2 16.0 215 1-249 48-284 (735)
80 KOG0302 Ribosome Assembly prot 99.9 4.3E-26 9.2E-31 163.7 16.2 178 10-250 201-378 (440)
81 KOG1446 Histone H3 (Lys4) meth 99.9 2.4E-24 5.1E-29 151.4 24.3 213 1-250 37-262 (311)
82 KOG1332 Vesicle coat complex C 99.9 3.3E-25 7.1E-30 150.7 18.7 222 1-248 34-284 (299)
83 PTZ00421 coronin; Provisional 99.9 6.4E-25 1.4E-29 172.0 22.9 197 1-229 99-313 (493)
84 KOG0300 WD40 repeat-containing 99.9 1.5E-25 3.4E-30 158.1 17.4 225 1-250 171-428 (481)
85 KOG0283 WD40 repeat-containing 99.9 2.4E-25 5.1E-30 174.2 19.7 221 13-249 259-531 (712)
86 KOG4283 Transcription-coupled 99.9 2.1E-25 4.5E-30 155.7 16.3 222 19-250 41-276 (397)
87 KOG0275 Conserved WD40 repeat- 99.9 8.5E-27 1.9E-31 164.9 9.3 214 2-248 237-507 (508)
88 KOG0310 Conserved WD40 repeat- 99.9 1.7E-25 3.7E-30 165.3 16.1 213 2-249 50-267 (487)
89 KOG0646 WD40 repeat protein [G 99.9 1.7E-25 3.6E-30 164.5 15.4 194 2-229 105-329 (476)
90 PTZ00420 coronin; Provisional 99.9 3E-24 6.5E-29 169.3 23.4 199 1-231 98-318 (568)
91 KOG0647 mRNA export protein (c 99.9 5.2E-25 1.1E-29 153.9 16.8 205 1-238 51-311 (347)
92 KOG1407 WD40 repeat protein [F 99.9 6.8E-25 1.5E-29 150.5 16.7 203 14-250 14-219 (313)
93 KOG0641 WD40 repeat protein [G 99.9 9.6E-24 2.1E-28 142.5 20.8 213 19-250 87-349 (350)
94 KOG0289 mRNA splicing factor [ 99.9 1.7E-24 3.8E-29 158.1 17.3 195 22-250 220-419 (506)
95 KOG0640 mRNA cleavage stimulat 99.9 1.1E-24 2.4E-29 153.2 15.7 215 12-249 164-425 (430)
96 KOG0299 U3 snoRNP-associated p 99.9 2.1E-24 4.5E-29 158.6 16.8 205 19-250 200-410 (479)
97 KOG0270 WD40 repeat-containing 99.9 1E-24 2.2E-29 159.5 14.7 199 19-249 241-448 (463)
98 KOG1036 Mitotic spindle checkp 99.9 6.6E-24 1.4E-28 148.7 17.2 201 1-240 76-294 (323)
99 KOG0772 Uncharacterized conser 99.9 1.3E-24 2.9E-29 162.0 14.0 199 1-250 190-394 (641)
100 KOG0302 Ribosome Assembly prot 99.9 3.3E-24 7.1E-29 154.1 15.4 188 2-247 236-435 (440)
101 KOG0267 Microtubule severing p 99.9 2.8E-25 6.1E-30 171.4 8.6 203 4-241 54-259 (825)
102 KOG0639 Transducin-like enhanc 99.9 1.3E-24 2.8E-29 161.8 11.3 211 1-249 488-703 (705)
103 KOG0268 Sof1-like rRNA process 99.9 2.6E-24 5.7E-29 153.9 12.0 211 12-250 58-302 (433)
104 KOG0300 WD40 repeat-containing 99.9 6.6E-24 1.4E-28 149.9 13.8 205 11-250 139-386 (481)
105 KOG0293 WD40 repeat-containing 99.9 2.1E-23 4.5E-28 151.8 16.6 204 12-249 216-469 (519)
106 KOG0267 Microtubule severing p 99.9 5E-25 1.1E-29 170.0 8.4 201 15-250 23-226 (825)
107 KOG0288 WD40 repeat protein Ti 99.9 5.4E-24 1.2E-28 154.6 13.2 208 2-249 199-416 (459)
108 KOG1034 Transcriptional repres 99.9 2.2E-23 4.8E-28 147.4 15.8 219 2-249 117-382 (385)
109 KOG0647 mRNA export protein (c 99.9 3.6E-23 7.7E-28 144.8 16.3 111 19-150 25-138 (347)
110 KOG0278 Serine/threonine kinas 99.9 1.1E-23 2.5E-28 143.9 13.5 171 2-201 124-300 (334)
111 KOG0772 Uncharacterized conser 99.9 2.8E-23 6.1E-28 155.0 16.2 200 19-247 266-484 (641)
112 KOG0307 Vesicle coat complex C 99.9 3.4E-24 7.4E-29 172.9 11.4 219 1-249 91-326 (1049)
113 KOG1036 Mitotic spindle checkp 99.9 2.6E-22 5.5E-27 140.8 19.0 213 1-249 36-261 (323)
114 KOG4328 WD40 protein [Function 99.9 4.8E-23 1E-27 151.5 15.8 220 6-249 172-398 (498)
115 KOG0308 Conserved WD40 repeat- 99.9 5.8E-23 1.3E-27 157.1 16.4 223 1-249 96-326 (735)
116 KOG0269 WD40 repeat-containing 99.9 5.6E-24 1.2E-28 165.4 11.0 158 23-249 89-249 (839)
117 KOG2445 Nuclear pore complex c 99.9 6.1E-22 1.3E-26 139.1 20.0 233 1-249 36-317 (361)
118 KOG0646 WD40 repeat protein [G 99.9 1.3E-22 2.8E-27 149.5 17.3 194 2-249 63-306 (476)
119 KOG1273 WD40 repeat protein [G 99.9 2.9E-22 6.2E-27 141.3 18.0 228 2-249 47-321 (405)
120 KOG0299 U3 snoRNP-associated p 99.9 1.9E-22 4.1E-27 148.4 17.6 213 13-249 135-355 (479)
121 KOG0321 WD40 repeat-containing 99.9 1.3E-22 2.8E-27 154.9 16.7 228 1-249 123-390 (720)
122 KOG0301 Phospholipase A2-activ 99.9 2.4E-22 5.1E-27 154.7 18.2 208 1-249 36-248 (745)
123 KOG1539 WD repeat protein [Gen 99.9 7.3E-22 1.6E-26 154.9 21.2 97 2-119 184-281 (910)
124 KOG1332 Vesicle coat complex C 99.9 6.8E-23 1.5E-27 139.5 12.9 210 14-249 4-240 (299)
125 KOG0301 Phospholipase A2-activ 99.9 4.3E-22 9.4E-27 153.3 18.2 204 1-249 82-287 (745)
126 KOG0305 Anaphase promoting com 99.9 1.5E-22 3.3E-27 154.3 15.0 175 1-200 281-463 (484)
127 KOG0650 WD40 repeat nucleolar 99.9 1E-22 2.2E-27 154.6 13.5 222 12-247 392-732 (733)
128 KOG1007 WD repeat protein TSSC 99.9 1.7E-21 3.7E-26 135.9 18.0 222 11-249 113-360 (370)
129 KOG0641 WD40 repeat protein [G 99.9 1.5E-20 3.2E-25 127.2 20.7 216 20-249 31-302 (350)
130 KOG1273 WD40 repeat protein [G 99.9 4.9E-21 1.1E-25 135.2 18.7 200 13-250 18-226 (405)
131 KOG2106 Uncharacterized conser 99.9 1.1E-20 2.5E-25 140.9 21.3 221 1-248 268-519 (626)
132 KOG1539 WD repeat protein [Gen 99.9 7.3E-21 1.6E-25 149.4 20.0 213 2-248 424-646 (910)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.6E-20 1.2E-24 138.0 24.3 212 1-250 54-279 (300)
134 KOG1188 WD40 repeat protein [G 99.9 2.9E-21 6.3E-26 137.4 15.6 187 1-250 51-242 (376)
135 KOG4283 Transcription-coupled 99.9 2.6E-21 5.6E-26 135.4 15.0 163 19-202 99-280 (397)
136 KOG0973 Histone transcription 99.9 1.9E-21 4.1E-26 156.5 16.3 185 20-249 12-200 (942)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.5E-20 1.8E-24 137.1 24.5 212 1-250 12-237 (300)
138 KOG1538 Uncharacterized conser 99.9 2.3E-20 4.9E-25 144.1 20.0 216 2-249 35-292 (1081)
139 KOG1408 WD40 repeat protein [F 99.9 4.7E-21 1E-25 148.7 16.0 217 1-250 482-713 (1080)
140 KOG1274 WD40 repeat protein [G 99.9 2.7E-20 5.9E-25 147.6 20.0 207 16-250 8-262 (933)
141 KOG4378 Nuclear protein COP1 [ 99.9 9E-21 2E-25 141.3 15.9 198 1-229 102-303 (673)
142 KOG0303 Actin-binding protein 99.9 6.2E-21 1.3E-25 138.3 12.7 168 16-249 77-248 (472)
143 KOG1587 Cytoplasmic dynein int 99.9 5.9E-20 1.3E-24 143.9 19.0 223 2-250 224-472 (555)
144 KOG2445 Nuclear pore complex c 99.9 2.5E-19 5.4E-24 126.1 19.7 216 14-250 6-256 (361)
145 KOG0290 Conserved WD40 repeat- 99.9 1.4E-19 3E-24 126.5 18.0 221 2-246 123-361 (364)
146 KOG2055 WD40 repeat protein [G 99.9 2.2E-19 4.7E-24 132.7 19.6 195 21-249 213-416 (514)
147 KOG0322 G-protein beta subunit 99.9 3.3E-20 7.1E-25 127.9 14.3 230 2-249 37-322 (323)
148 KOG2048 WD40 repeat protein [G 99.9 3.3E-19 7.1E-24 137.3 20.4 201 20-249 24-232 (691)
149 KOG2048 WD40 repeat protein [G 99.9 8.6E-19 1.9E-23 135.0 22.5 212 1-249 48-274 (691)
150 KOG0321 WD40 repeat-containing 99.9 3.2E-20 7E-25 142.0 14.3 209 2-250 76-301 (720)
151 KOG1408 WD40 repeat protein [F 99.8 1.6E-19 3.4E-24 140.4 18.1 201 21-249 459-670 (1080)
152 KOG0294 WD40 repeat-containing 99.8 3.9E-19 8.5E-24 125.5 18.3 195 13-249 36-236 (362)
153 KOG0307 Vesicle coat complex C 99.8 1.6E-20 3.4E-25 152.0 12.5 206 20-250 63-284 (1049)
154 KOG0642 Cell-cycle nuclear pro 99.8 5E-20 1.1E-24 139.0 14.1 223 1-249 317-560 (577)
155 KOG0270 WD40 repeat-containing 99.8 8.2E-20 1.8E-24 134.1 14.9 209 25-250 177-404 (463)
156 KOG1310 WD40 repeat protein [G 99.8 9.5E-21 2.1E-25 142.9 9.7 186 13-249 43-230 (758)
157 KOG2055 WD40 repeat protein [G 99.8 2.9E-19 6.4E-24 132.0 16.9 213 2-249 282-511 (514)
158 KOG0639 Transducin-like enhanc 99.8 1E-19 2.2E-24 136.1 14.6 211 2-249 442-662 (705)
159 KOG4378 Nuclear protein COP1 [ 99.8 1.1E-19 2.3E-24 135.7 13.8 195 23-250 81-280 (673)
160 KOG0771 Prolactin regulatory e 99.8 4.3E-19 9.3E-24 129.6 16.6 192 25-249 148-353 (398)
161 KOG1063 RNA polymerase II elon 99.8 3.6E-19 7.8E-24 137.5 15.8 227 1-248 35-295 (764)
162 KOG2919 Guanine nucleotide-bin 99.8 1.3E-18 2.9E-23 123.4 17.4 215 23-250 51-281 (406)
163 KOG1007 WD repeat protein TSSC 99.8 5E-19 1.1E-23 123.7 14.9 205 15-249 58-288 (370)
164 KOG1274 WD40 repeat protein [G 99.8 1.7E-18 3.8E-23 137.6 19.7 195 1-233 77-283 (933)
165 KOG1063 RNA polymerase II elon 99.8 2E-18 4.3E-23 133.4 16.4 210 14-249 355-647 (764)
166 KOG2919 Guanine nucleotide-bin 99.8 7.3E-19 1.6E-23 124.7 12.7 203 21-250 104-327 (406)
167 KOG0303 Actin-binding protein 99.8 4.9E-18 1.1E-22 123.4 17.2 174 1-200 105-296 (472)
168 KOG2096 WD40 repeat protein [G 99.8 2.1E-18 4.6E-23 122.2 14.7 166 72-249 81-307 (420)
169 KOG0290 Conserved WD40 repeat- 99.8 6E-18 1.3E-22 118.5 16.7 219 7-250 82-318 (364)
170 KOG1009 Chromatin assembly com 99.8 2.5E-17 5.4E-22 120.0 19.9 227 2-247 38-369 (434)
171 KOG2110 Uncharacterized conser 99.8 7.5E-17 1.6E-21 116.3 20.4 188 24-250 49-248 (391)
172 KOG4328 WD40 protein [Function 99.8 1.2E-17 2.5E-22 123.5 16.2 220 1-248 211-448 (498)
173 KOG2106 Uncharacterized conser 99.8 8E-17 1.7E-21 120.7 20.1 198 19-249 366-625 (626)
174 KOG1034 Transcriptional repres 99.8 2.2E-17 4.7E-22 117.5 16.2 177 14-250 31-211 (385)
175 KOG0649 WD40 repeat protein [G 99.8 2E-17 4.3E-22 113.2 15.5 176 13-250 55-235 (325)
176 KOG1009 Chromatin assembly com 99.8 6.9E-18 1.5E-22 122.9 11.9 178 21-248 13-193 (434)
177 KOG1188 WD40 repeat protein [G 99.8 1.9E-17 4E-22 118.3 13.4 150 36-250 42-196 (376)
178 COG2319 FOG: WD40 repeat [Gene 99.8 2.3E-15 4.9E-20 118.0 26.6 212 1-250 135-359 (466)
179 KOG1445 Tumor-specific antigen 99.8 8.7E-18 1.9E-22 129.4 11.2 150 40-249 599-749 (1012)
180 PRK01742 tolB translocation pr 99.8 9.1E-17 2E-21 125.9 17.3 205 1-249 185-400 (429)
181 KOG1445 Tumor-specific antigen 99.8 1.3E-17 2.8E-22 128.4 11.9 166 20-248 626-796 (1012)
182 KOG1517 Guanine nucleotide bin 99.7 1.2E-15 2.5E-20 123.8 21.3 225 1-250 1087-1333(1387)
183 KOG0644 Uncharacterized conser 99.7 3.9E-18 8.5E-23 134.6 7.0 207 2-249 214-425 (1113)
184 KOG4227 WD40 repeat protein [G 99.7 1.6E-16 3.4E-21 116.0 14.5 169 15-250 51-225 (609)
185 KOG1538 Uncharacterized conser 99.7 2.9E-16 6.2E-21 121.8 15.4 191 23-249 14-210 (1081)
186 KOG2394 WD40 protein DMR-N9 [G 99.7 4.7E-16 1E-20 117.5 15.4 150 21-228 219-383 (636)
187 PRK11028 6-phosphogluconolacto 99.7 4.7E-14 1E-18 107.4 25.3 219 2-249 59-303 (330)
188 COG2319 FOG: WD40 repeat [Gene 99.7 2.4E-14 5.1E-19 112.3 23.9 216 1-250 88-314 (466)
189 KOG2111 Uncharacterized conser 99.7 1.3E-14 2.8E-19 103.1 19.4 175 2-250 77-256 (346)
190 PF08662 eIF2A: Eukaryotic tra 99.7 8.4E-15 1.8E-19 102.0 18.2 149 25-249 9-178 (194)
191 KOG3881 Uncharacterized conser 99.7 3.5E-15 7.6E-20 108.6 16.0 187 2-250 127-320 (412)
192 KOG1963 WD40 repeat protein [G 99.7 6.8E-15 1.5E-19 116.9 18.5 226 1-249 38-321 (792)
193 PRK11028 6-phosphogluconolacto 99.7 7E-14 1.5E-18 106.5 23.7 219 1-249 13-257 (330)
194 KOG1587 Cytoplasmic dynein int 99.7 1.1E-14 2.4E-19 114.6 19.4 232 2-250 267-516 (555)
195 KOG1272 WD40-repeat-containing 99.7 4.5E-16 9.8E-21 115.6 10.7 168 2-248 193-360 (545)
196 KOG1334 WD40 repeat protein [G 99.7 1.5E-16 3.2E-21 118.7 8.0 224 11-248 133-464 (559)
197 KOG1240 Protein kinase contain 99.7 1.1E-14 2.3E-19 119.9 18.7 216 9-250 1037-1273(1431)
198 KOG2110 Uncharacterized conser 99.7 3.3E-13 7.3E-18 97.8 24.2 173 2-201 70-251 (391)
199 KOG1272 WD40-repeat-containing 99.7 2.3E-16 5.1E-21 117.1 7.3 190 23-250 131-323 (545)
200 KOG0771 Prolactin regulatory e 99.7 1.7E-15 3.6E-20 111.1 11.2 174 1-199 167-355 (398)
201 KOG0642 Cell-cycle nuclear pro 99.7 2.6E-15 5.7E-20 113.9 12.4 189 14-249 288-518 (577)
202 KOG0644 Uncharacterized conser 99.7 8.9E-17 1.9E-21 127.2 4.5 121 10-198 180-300 (1113)
203 PRK04922 tolB translocation pr 99.6 7.5E-14 1.6E-18 109.8 20.5 207 2-249 186-410 (433)
204 KOG0322 G-protein beta subunit 99.6 1.9E-15 4E-20 104.8 8.8 134 2-197 177-322 (323)
205 PRK03629 tolB translocation pr 99.6 2.8E-13 6.2E-18 106.2 22.1 207 2-249 181-405 (429)
206 KOG4227 WD40 repeat protein [G 99.6 6.9E-14 1.5E-18 102.4 16.6 215 2-250 80-322 (609)
207 PRK05137 tolB translocation pr 99.6 3.9E-13 8.4E-18 105.9 22.0 207 2-249 184-411 (435)
208 KOG2394 WD40 protein DMR-N9 [G 99.6 1.7E-14 3.8E-19 109.2 13.4 179 31-249 183-361 (636)
209 KOG1524 WD40 repeat-containing 99.6 7.5E-15 1.6E-19 111.3 11.2 139 36-199 77-217 (737)
210 KOG1517 Guanine nucleotide bin 99.6 4.2E-14 9.1E-19 115.0 15.1 184 1-249 1188-1380(1387)
211 KOG1523 Actin-related protein 99.6 9.6E-14 2.1E-18 98.8 14.8 162 20-248 9-174 (361)
212 KOG1523 Actin-related protein 99.6 1.1E-13 2.3E-18 98.6 15.0 177 2-201 34-239 (361)
213 PRK02889 tolB translocation pr 99.6 2.2E-13 4.7E-18 106.9 18.3 197 2-241 178-391 (427)
214 KOG0649 WD40 repeat protein [G 99.6 5.2E-14 1.1E-18 96.7 12.7 176 22-250 11-186 (325)
215 KOG1524 WD40 repeat-containing 99.6 4E-14 8.7E-19 107.4 12.7 186 9-246 93-282 (737)
216 PRK01742 tolB translocation pr 99.6 1.5E-13 3.2E-18 108.0 15.0 185 2-230 230-426 (429)
217 PF08662 eIF2A: Eukaryotic tra 99.6 7.7E-13 1.7E-17 92.3 16.4 119 13-199 51-180 (194)
218 KOG2139 WD40 repeat protein [G 99.5 2.9E-12 6.3E-17 93.0 18.8 200 19-249 194-430 (445)
219 KOG4497 Uncharacterized conser 99.5 9E-14 2E-18 99.6 10.6 198 5-248 34-238 (447)
220 KOG1963 WD40 repeat protein [G 99.5 4.3E-12 9.3E-17 101.4 19.9 107 19-143 203-309 (792)
221 KOG2139 WD40 repeat protein [G 99.5 2.9E-12 6.3E-17 93.0 16.5 184 22-238 99-298 (445)
222 KOG0650 WD40 repeat nucleolar 99.5 2.1E-13 4.5E-18 104.7 11.1 168 2-195 548-732 (733)
223 KOG1064 RAVE (regulator of V-A 99.5 1.6E-13 3.5E-18 117.0 10.9 183 19-250 2206-2398(2439)
224 KOG4497 Uncharacterized conser 99.5 1.5E-11 3.3E-16 88.4 19.2 211 1-249 72-390 (447)
225 KOG2321 WD40 repeat protein [G 99.5 1.6E-12 3.6E-17 99.5 14.9 186 2-249 157-342 (703)
226 PF02239 Cytochrom_D1: Cytochr 99.5 4.7E-11 1E-15 91.4 22.2 181 2-249 18-201 (369)
227 TIGR02800 propeller_TolB tol-p 99.5 1.6E-11 3.5E-16 96.7 20.4 199 2-241 172-385 (417)
228 KOG1409 Uncharacterized conser 99.5 1.7E-12 3.6E-17 93.6 13.2 208 11-250 15-270 (404)
229 PRK03629 tolB translocation pr 99.5 1.5E-11 3.3E-16 96.6 19.9 189 2-229 225-427 (429)
230 KOG3881 Uncharacterized conser 99.5 1.6E-12 3.5E-17 95.0 13.2 137 2-200 175-322 (412)
231 KOG2111 Uncharacterized conser 99.5 5.6E-12 1.2E-16 89.9 15.6 95 2-115 161-258 (346)
232 KOG0974 WD-repeat protein WDR6 99.5 3.3E-12 7.2E-17 103.8 15.1 171 2-249 111-287 (967)
233 KOG0974 WD-repeat protein WDR6 99.5 1E-12 2.2E-17 106.7 12.0 133 2-200 157-290 (967)
234 KOG2321 WD40 repeat protein [G 99.5 9.5E-12 2.1E-16 95.4 15.9 202 19-250 49-258 (703)
235 KOG0280 Uncharacterized conser 99.4 3.8E-11 8.3E-16 84.9 17.5 189 2-250 48-241 (339)
236 PRK00178 tolB translocation pr 99.4 1.1E-10 2.4E-15 92.2 22.2 207 2-249 181-405 (430)
237 KOG4714 Nucleoporin [Nuclear s 99.4 1.1E-12 2.4E-17 91.1 9.3 208 19-249 33-253 (319)
238 KOG1310 WD40 repeat protein [G 99.4 1.5E-12 3.2E-17 99.4 10.3 132 73-250 46-178 (758)
239 KOG4547 WD40 repeat-containing 99.4 3.5E-11 7.6E-16 92.4 17.4 196 36-249 7-219 (541)
240 PF02239 Cytochrom_D1: Cytochr 99.4 1.8E-10 3.8E-15 88.3 20.8 221 1-249 59-346 (369)
241 PRK01029 tolB translocation pr 99.4 3.9E-10 8.5E-15 88.5 23.0 211 3-249 168-402 (428)
242 PF10282 Lactonase: Lactonase, 99.4 3.6E-09 7.9E-14 81.0 27.3 210 21-249 86-321 (345)
243 KOG1240 Protein kinase contain 99.4 3.7E-10 7.9E-15 94.0 20.6 235 1-249 1072-1333(1431)
244 PRK05137 tolB translocation pr 99.4 1.7E-10 3.6E-15 91.2 17.9 172 1-200 227-414 (435)
245 KOG2315 Predicted translation 99.4 1.7E-10 3.6E-15 88.4 17.0 126 105-249 251-389 (566)
246 PRK04922 tolB translocation pr 99.3 1.5E-10 3.3E-15 91.3 17.5 189 2-229 230-432 (433)
247 TIGR02658 TTQ_MADH_Hv methylam 99.3 1E-08 2.2E-13 77.3 26.1 220 1-249 28-329 (352)
248 PRK04792 tolB translocation pr 99.3 1.1E-09 2.5E-14 86.5 20.2 207 2-249 200-424 (448)
249 KOG4547 WD40 repeat-containing 99.3 6.5E-10 1.4E-14 85.7 17.3 134 2-200 82-222 (541)
250 KOG0280 Uncharacterized conser 99.3 7.6E-11 1.7E-15 83.5 11.1 141 24-232 124-266 (339)
251 PRK02889 tolB translocation pr 99.3 1.4E-09 3E-14 85.7 19.2 151 77-249 195-359 (427)
252 PF00400 WD40: WD domain, G-be 99.3 3.2E-11 6.9E-16 61.1 5.9 39 10-50 1-39 (39)
253 KOG1354 Serine/threonine prote 99.2 3.1E-10 6.8E-15 82.2 12.3 211 20-250 24-244 (433)
254 TIGR02800 propeller_TolB tol-p 99.2 9.9E-09 2.1E-13 81.0 20.1 169 44-249 170-353 (417)
255 KOG1409 Uncharacterized conser 99.2 6.9E-10 1.5E-14 80.4 11.1 87 10-116 187-273 (404)
256 KOG3914 WD repeat protein WDR4 99.2 2.8E-10 6.1E-15 83.8 9.2 97 4-122 136-232 (390)
257 KOG0309 Conserved WD40 repeat- 99.2 1.3E-10 2.8E-15 92.1 7.7 185 4-249 95-338 (1081)
258 PRK04792 tolB translocation pr 99.1 8.2E-09 1.8E-13 81.7 17.5 189 2-229 244-446 (448)
259 PF10282 Lactonase: Lactonase, 99.1 4.5E-07 9.7E-12 69.6 25.8 218 2-249 15-274 (345)
260 PF15492 Nbas_N: Neuroblastoma 99.1 1.1E-07 2.4E-12 67.7 20.3 202 23-250 45-259 (282)
261 KOG3914 WD repeat protein WDR4 99.1 2.4E-09 5.2E-14 79.0 12.4 141 94-250 73-223 (390)
262 PRK00178 tolB translocation pr 99.1 1.2E-08 2.7E-13 80.7 17.5 189 2-229 225-427 (430)
263 KOG4190 Uncharacterized conser 99.1 1.8E-10 3.8E-15 88.7 6.7 163 13-201 728-909 (1034)
264 PF00400 WD40: WD domain, G-be 99.1 3.9E-10 8.4E-15 57.0 6.0 38 156-196 2-39 (39)
265 PF04762 IKI3: IKI3 family; I 99.1 1.9E-07 4.2E-12 79.6 24.7 206 21-249 120-378 (928)
266 KOG1354 Serine/threonine prote 99.1 4.5E-09 9.9E-14 76.3 11.9 169 14-201 157-362 (433)
267 COG2706 3-carboxymuconate cycl 99.1 1.2E-06 2.6E-11 64.5 24.1 209 23-249 90-320 (346)
268 COG4946 Uncharacterized protei 99.1 1.5E-07 3.3E-12 71.6 19.9 117 2-142 384-504 (668)
269 PLN02919 haloacid dehalogenase 99.1 2.5E-07 5.5E-12 80.2 24.0 197 24-250 685-888 (1057)
270 KOG4532 WD40-like repeat conta 99.0 6.3E-08 1.4E-12 68.3 15.9 159 24-240 161-322 (344)
271 KOG1645 RING-finger-containing 99.0 4E-08 8.7E-13 72.9 15.5 95 2-116 175-269 (463)
272 KOG2695 WD40 repeat protein [G 99.0 1.8E-09 3.9E-14 78.4 8.4 130 20-202 251-380 (425)
273 COG2706 3-carboxymuconate cycl 99.0 1E-06 2.2E-11 64.8 22.1 224 2-248 18-272 (346)
274 PF07433 DUF1513: Protein of u 99.0 9.3E-07 2E-11 64.8 21.8 175 2-201 30-250 (305)
275 PRK01029 tolB translocation pr 99.0 1.8E-07 3.8E-12 73.7 19.5 174 2-200 213-405 (428)
276 KOG4714 Nucleoporin [Nuclear s 99.0 1.1E-08 2.3E-13 71.7 10.5 76 22-114 180-255 (319)
277 KOG1334 WD40 repeat protein [G 99.0 4.4E-09 9.6E-14 79.6 9.2 164 72-250 137-312 (559)
278 KOG1064 RAVE (regulator of V-A 99.0 6.4E-09 1.4E-13 90.1 11.2 153 77-250 2208-2366(2439)
279 KOG2695 WD40 repeat protein [G 99.0 3.7E-09 8E-14 76.8 7.9 157 28-250 218-376 (425)
280 KOG4532 WD40-like repeat conta 99.0 2.6E-07 5.7E-12 65.3 16.5 185 3-250 97-282 (344)
281 KOG2315 Predicted translation 98.9 7E-08 1.5E-12 74.4 13.7 129 2-200 253-392 (566)
282 TIGR02658 TTQ_MADH_Hv methylam 98.9 2E-06 4.2E-11 65.2 20.8 195 1-201 78-333 (352)
283 KOG2314 Translation initiation 98.9 1.9E-07 4.1E-12 72.3 15.1 208 2-241 284-558 (698)
284 PF13360 PQQ_2: PQQ-like domai 98.9 3E-06 6.5E-11 61.6 20.9 207 1-250 4-230 (238)
285 PRK04043 tolB translocation pr 98.9 3.5E-06 7.7E-11 66.1 22.3 176 23-239 189-386 (419)
286 KOG4190 Uncharacterized conser 98.9 1.9E-08 4E-13 77.9 9.0 177 1-200 758-950 (1034)
287 KOG0309 Conserved WD40 repeat- 98.8 1.8E-08 3.8E-13 80.4 8.7 202 20-250 23-232 (1081)
288 COG5170 CDC55 Serine/threonine 98.8 3.1E-08 6.8E-13 71.3 8.5 203 20-250 25-252 (460)
289 PF11768 DUF3312: Protein of u 98.8 1.1E-06 2.3E-11 68.9 16.7 71 164-249 258-328 (545)
290 KOG2314 Translation initiation 98.8 1.7E-06 3.6E-11 67.3 17.4 211 3-249 234-477 (698)
291 KOG1275 PAB-dependent poly(A) 98.7 9.9E-07 2.1E-11 72.3 14.3 172 3-248 160-340 (1118)
292 PRK04043 tolB translocation pr 98.7 1.3E-05 2.7E-10 63.1 19.9 168 2-200 215-402 (419)
293 TIGR03300 assembly_YfgL outer 98.7 1.9E-05 4E-10 61.7 20.4 210 2-247 157-376 (377)
294 KOG2066 Vacuolar assembly/sort 98.7 2.7E-06 5.9E-11 68.8 15.3 151 32-249 82-232 (846)
295 KOG2041 WD40 repeat protein [G 98.6 7.8E-07 1.7E-11 71.2 12.1 213 20-246 13-243 (1189)
296 KOG2041 WD40 repeat protein [G 98.6 7.9E-07 1.7E-11 71.2 11.9 196 13-241 64-279 (1189)
297 COG4946 Uncharacterized protei 98.6 7.1E-06 1.5E-10 62.8 16.4 118 19-200 357-479 (668)
298 PF08450 SGL: SMP-30/Gluconola 98.6 8E-05 1.7E-09 54.5 25.4 182 24-238 42-244 (246)
299 PF04762 IKI3: IKI3 family; I 98.6 1.6E-05 3.5E-10 68.3 19.6 194 21-249 75-332 (928)
300 PF06977 SdiA-regulated: SdiA- 98.6 8.5E-05 1.8E-09 53.8 21.6 203 14-247 15-247 (248)
301 COG5354 Uncharacterized protei 98.6 4E-05 8.6E-10 59.2 19.2 212 2-249 110-347 (561)
302 KOG1920 IkappaB kinase complex 98.6 3.5E-05 7.7E-10 65.5 20.3 168 20-200 108-324 (1265)
303 COG5354 Uncharacterized protei 98.6 1.9E-05 4.2E-10 60.9 17.2 115 5-143 17-148 (561)
304 PLN02919 haloacid dehalogenase 98.6 0.00017 3.6E-09 63.3 24.9 214 25-249 571-832 (1057)
305 TIGR03300 assembly_YfgL outer 98.5 6.6E-05 1.4E-09 58.6 20.6 203 2-249 117-337 (377)
306 KOG1912 WD40 repeat protein [G 98.5 3.4E-05 7.3E-10 62.8 18.5 217 2-248 37-302 (1062)
307 PF11768 DUF3312: Protein of u 98.5 2.1E-06 4.6E-11 67.2 11.6 78 19-118 257-334 (545)
308 KOG1912 WD40 repeat protein [G 98.5 9.5E-06 2.1E-10 65.8 15.3 162 21-247 15-183 (1062)
309 PF08450 SGL: SMP-30/Gluconola 98.5 0.00015 3.2E-09 53.1 21.2 193 25-249 3-212 (246)
310 KOG0882 Cyclophilin-related pe 98.5 2.7E-06 5.9E-11 64.5 10.5 179 12-249 45-230 (558)
311 KOG1832 HIV-1 Vpr-binding prot 98.4 2E-06 4.3E-11 70.7 9.2 173 11-203 1092-1296(1516)
312 COG5170 CDC55 Serine/threonine 98.4 2.6E-06 5.6E-11 61.7 8.4 186 22-250 86-309 (460)
313 smart00320 WD40 WD40 repeats. 98.4 1.4E-06 3.1E-11 43.1 5.3 39 10-50 2-40 (40)
314 KOG4640 Anaphase-promoting com 98.4 3.3E-06 7.2E-11 66.6 8.7 95 21-136 20-115 (665)
315 PF15492 Nbas_N: Neuroblastoma 98.3 0.00016 3.4E-09 52.1 15.9 170 1-201 66-262 (282)
316 KOG1275 PAB-dependent poly(A) 98.3 5.2E-06 1.1E-10 68.3 9.2 135 1-197 198-341 (1118)
317 KOG1008 Uncharacterized conser 98.3 6E-07 1.3E-11 70.8 3.9 200 22-250 57-275 (783)
318 PF03178 CPSF_A: CPSF A subuni 98.3 0.00068 1.5E-08 51.7 20.0 217 2-246 4-261 (321)
319 KOG2066 Vacuolar assembly/sort 98.2 3E-05 6.6E-10 63.1 11.7 147 21-250 39-187 (846)
320 PRK02888 nitrous-oxide reducta 98.2 0.00016 3.5E-09 58.4 14.7 144 2-199 217-405 (635)
321 KOG2114 Vacuolar assembly/sort 98.2 0.00034 7.3E-09 57.7 16.6 187 29-249 31-242 (933)
322 PRK11138 outer membrane biogen 98.2 0.0017 3.7E-08 51.1 20.4 213 2-250 172-394 (394)
323 KOG1645 RING-finger-containing 98.2 6.6E-06 1.4E-10 61.6 6.3 80 158-250 186-266 (463)
324 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00047 1E-08 42.7 13.8 67 24-113 2-71 (111)
325 PF07433 DUF1513: Protein of u 98.1 0.0015 3.4E-08 48.3 20.0 201 23-249 6-246 (305)
326 KOG3621 WD40 repeat-containing 98.1 6.4E-05 1.4E-09 60.4 11.2 124 20-199 32-155 (726)
327 smart00320 WD40 WD40 repeats. 98.1 8.3E-06 1.8E-10 40.2 4.5 36 158-196 5-40 (40)
328 PRK02888 nitrous-oxide reducta 98.1 0.00062 1.3E-08 55.2 16.6 142 94-250 203-351 (635)
329 COG0823 TolB Periplasmic compo 98.1 0.0015 3.3E-08 51.5 18.1 166 10-201 182-361 (425)
330 PF08553 VID27: VID27 cytoplas 98.0 0.00045 9.8E-09 57.9 15.2 149 36-248 495-645 (794)
331 KOG1920 IkappaB kinase complex 98.0 0.0021 4.4E-08 55.4 18.9 198 21-249 68-321 (1265)
332 PF08553 VID27: VID27 cytoplas 98.0 0.0006 1.3E-08 57.2 15.7 136 2-198 506-647 (794)
333 KOG2444 WD40 repeat protein [G 98.0 2E-05 4.4E-10 54.8 5.2 105 94-249 69-176 (238)
334 KOG3617 WD40 and TPR repeat-co 98.0 6.7E-05 1.5E-09 61.9 8.9 71 23-113 61-131 (1416)
335 PF05096 Glu_cyclase_2: Glutam 97.9 0.0035 7.6E-08 45.5 17.6 201 11-239 34-250 (264)
336 KOG2114 Vacuolar assembly/sort 97.9 0.003 6.6E-08 52.5 17.4 167 14-200 58-245 (933)
337 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0074 1.6E-07 47.7 20.9 47 2-52 63-109 (410)
338 PF13360 PQQ_2: PQQ-like domai 97.9 0.0044 9.6E-08 45.0 19.0 135 42-202 1-144 (238)
339 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0023 5.1E-08 45.8 14.2 113 27-203 16-128 (354)
340 PRK11138 outer membrane biogen 97.9 0.0056 1.2E-07 48.3 18.2 100 2-121 132-231 (394)
341 KOG3621 WD40 repeat-containing 97.8 0.00031 6.6E-09 56.7 10.4 110 94-249 44-153 (726)
342 KOG1008 Uncharacterized conser 97.8 3.8E-05 8.2E-10 61.1 5.3 140 2-200 131-277 (783)
343 KOG0882 Cyclophilin-related pe 97.8 0.0014 3E-08 50.4 13.0 120 39-204 117-237 (558)
344 PF12894 Apc4_WD40: Anaphase-p 97.8 0.00014 3E-09 37.7 5.2 35 21-57 11-45 (47)
345 COG3204 Uncharacterized protei 97.8 0.0077 1.7E-07 44.1 16.1 171 19-247 83-260 (316)
346 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0029 6.4E-08 39.3 13.0 106 80-246 2-110 (111)
347 PF08596 Lgl_C: Lethal giant l 97.7 0.0021 4.5E-08 50.2 13.1 160 79-249 3-172 (395)
348 KOG1832 HIV-1 Vpr-binding prot 97.7 0.00017 3.6E-09 60.0 7.3 114 76-203 1100-1219(1516)
349 KOG3617 WD40 and TPR repeat-co 97.6 0.00076 1.6E-08 56.0 10.1 110 24-198 18-131 (1416)
350 PF04053 Coatomer_WDAD: Coatom 97.6 0.0058 1.3E-07 48.5 14.4 132 79-249 34-172 (443)
351 PF04841 Vps16_N: Vps16, N-ter 97.6 0.024 5.1E-07 44.9 19.3 51 45-116 62-112 (410)
352 PF03178 CPSF_A: CPSF A subuni 97.6 0.0046 1E-07 47.2 13.3 179 44-249 2-201 (321)
353 COG0823 TolB Periplasmic compo 97.6 0.0041 9E-08 49.1 13.0 120 2-145 220-344 (425)
354 PF06977 SdiA-regulated: SdiA- 97.5 0.022 4.8E-07 41.5 14.8 162 78-249 22-200 (248)
355 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.012 2.6E-07 45.6 14.3 169 30-233 1-196 (353)
356 KOG2395 Protein involved in va 97.4 0.0058 1.3E-07 48.3 12.0 150 36-248 348-498 (644)
357 KOG4640 Anaphase-promoting com 97.4 0.0012 2.5E-08 52.9 8.2 71 166-250 21-92 (665)
358 KOG2079 Vacuolar assembly/sort 97.4 0.0017 3.7E-08 55.2 9.0 70 165-249 130-202 (1206)
359 COG3391 Uncharacterized conser 97.3 0.048 1E-06 42.8 18.4 175 2-201 98-286 (381)
360 PHA02713 hypothetical protein; 97.3 0.068 1.5E-06 44.2 17.5 26 94-119 351-381 (557)
361 COG3391 Uncharacterized conser 97.3 0.059 1.3E-06 42.3 21.8 189 24-248 76-281 (381)
362 PF04053 Coatomer_WDAD: Coatom 97.3 0.051 1.1E-06 43.3 15.9 132 95-249 117-261 (443)
363 KOG4441 Proteins containing BT 97.3 0.035 7.7E-07 45.9 15.5 202 2-243 303-534 (571)
364 PF08596 Lgl_C: Lethal giant l 97.2 0.071 1.5E-06 41.9 20.4 90 23-120 3-122 (395)
365 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.074 1.6E-06 41.3 19.9 51 2-56 25-75 (353)
366 cd00216 PQQ_DH Dehydrogenases 97.1 0.11 2.4E-06 42.3 19.6 111 2-122 177-328 (488)
367 PF06433 Me-amine-dh_H: Methyl 97.1 0.081 1.7E-06 40.2 20.5 107 2-124 19-137 (342)
368 KOG2395 Protein involved in va 97.1 0.0095 2.1E-07 47.1 9.8 124 2-143 358-488 (644)
369 PF10168 Nup88: Nuclear pore c 97.0 0.036 7.9E-07 46.9 13.7 39 163-201 144-182 (717)
370 COG3490 Uncharacterized protei 97.0 0.079 1.7E-06 38.9 17.9 175 3-202 94-314 (366)
371 PRK13616 lipoprotein LpqB; Pro 97.0 0.17 3.8E-06 42.1 16.9 187 22-245 350-563 (591)
372 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0051 1.1E-07 31.9 5.2 31 165-198 11-41 (47)
373 PF06433 Me-amine-dh_H: Methyl 96.7 0.18 3.9E-06 38.4 16.1 127 44-200 17-167 (342)
374 KOG2079 Vacuolar assembly/sort 96.7 0.012 2.5E-07 50.6 8.0 70 36-123 101-170 (1206)
375 KOG2444 WD40 repeat protein [G 96.7 0.016 3.5E-07 40.8 7.5 105 36-201 72-180 (238)
376 KOG4441 Proteins containing BT 96.5 0.33 7.1E-06 40.4 15.2 141 36-203 287-457 (571)
377 COG3823 Glutamine cyclotransfe 96.5 0.17 3.6E-06 35.5 12.2 91 2-115 70-160 (262)
378 PF10647 Gmad1: Lipoprotein Lp 96.4 0.24 5.1E-06 36.6 14.0 143 23-189 25-186 (253)
379 PF02897 Peptidase_S9_N: Proly 96.3 0.41 8.9E-06 38.1 21.4 96 1-115 151-262 (414)
380 PF05694 SBP56: 56kDa selenium 96.3 0.09 2E-06 41.2 10.2 109 1-115 223-344 (461)
381 PF10313 DUF2415: Uncharacteri 96.3 0.027 5.9E-07 28.3 4.9 32 22-53 1-34 (43)
382 cd00216 PQQ_DH Dehydrogenases 96.2 0.55 1.2E-05 38.4 18.7 104 2-123 73-193 (488)
383 KOG2280 Vacuolar assembly/sort 96.2 0.66 1.4E-05 39.0 15.6 53 2-59 66-118 (829)
384 COG3386 Gluconolactonase [Carb 96.1 0.4 8.7E-06 36.4 18.3 100 127-240 163-276 (307)
385 PF02897 Peptidase_S9_N: Proly 96.1 0.52 1.1E-05 37.6 20.0 100 23-142 125-242 (414)
386 KOG1897 Damage-specific DNA bi 95.9 0.99 2.2E-05 39.2 17.1 174 2-247 752-939 (1096)
387 PF14583 Pectate_lyase22: Olig 95.9 0.59 1.3E-05 36.4 18.5 55 2-58 62-116 (386)
388 KOG4499 Ca2+-binding protein R 95.9 0.24 5.3E-06 35.4 10.0 100 22-135 158-262 (310)
389 PHA03098 kelch-like protein; P 95.9 0.83 1.8E-05 37.8 16.0 23 32-55 342-369 (534)
390 PRK13616 lipoprotein LpqB; Pro 95.9 0.61 1.3E-05 39.0 13.9 152 78-249 350-524 (591)
391 PF00780 CNH: CNH domain; Int 95.8 0.55 1.2E-05 35.0 15.9 61 32-116 6-67 (275)
392 PF10313 DUF2415: Uncharacteri 95.8 0.055 1.2E-06 27.2 4.7 30 221-250 2-33 (43)
393 PF05096 Glu_cyclase_2: Glutam 95.7 0.55 1.2E-05 34.5 17.0 95 2-120 70-164 (264)
394 PF12234 Rav1p_C: RAVE protein 95.6 1.1 2.4E-05 37.5 15.0 112 94-248 40-154 (631)
395 KOG4649 PQQ (pyrrolo-quinoline 95.6 0.61 1.3E-05 34.0 17.8 89 33-142 63-152 (354)
396 PF07569 Hira: TUP1-like enhan 95.5 0.15 3.3E-06 36.6 8.2 70 178-249 20-94 (219)
397 PF14761 HPS3_N: Hermansky-Pud 95.4 0.64 1.4E-05 32.9 13.8 50 96-145 29-78 (215)
398 PF00780 CNH: CNH domain; Int 95.4 0.81 1.8E-05 34.1 20.6 113 21-142 35-154 (275)
399 PF12234 Rav1p_C: RAVE protein 95.3 1 2.2E-05 37.7 13.0 108 21-145 29-147 (631)
400 PF05694 SBP56: 56kDa selenium 95.1 1.3 2.8E-05 35.1 12.3 159 4-203 161-347 (461)
401 PHA02713 hypothetical protein; 95.1 1.7 3.7E-05 36.2 14.9 23 179-201 512-536 (557)
402 PF14727 PHTB1_N: PTHB1 N-term 95.1 1.4 3E-05 35.1 17.5 58 181-249 146-203 (418)
403 PF14655 RAB3GAP2_N: Rab3 GTPa 95.0 0.74 1.6E-05 36.5 11.1 46 14-61 301-346 (415)
404 PF14761 HPS3_N: Hermansky-Pud 94.9 0.9 2E-05 32.2 16.9 167 36-249 30-213 (215)
405 COG5167 VID27 Protein involved 94.8 1.7 3.8E-05 35.1 12.6 59 180-249 573-631 (776)
406 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.7 0.55 1.2E-05 38.7 10.2 49 94-142 471-519 (527)
407 TIGR02276 beta_rpt_yvtn 40-res 94.6 0.17 3.6E-06 25.2 4.7 33 31-63 1-33 (42)
408 COG3386 Gluconolactonase [Carb 94.5 1.6 3.5E-05 33.2 17.6 192 26-248 29-241 (307)
409 COG3490 Uncharacterized protei 94.4 1.5 3.2E-05 32.6 16.8 116 9-143 57-178 (366)
410 PF08728 CRT10: CRT10; InterP 94.4 2.8 6E-05 35.7 16.0 140 77-249 100-245 (717)
411 KOG4460 Nuclear pore complex, 94.4 2.2 4.7E-05 34.7 12.1 38 166-203 166-203 (741)
412 PF14655 RAB3GAP2_N: Rab3 GTPa 94.2 0.77 1.7E-05 36.4 9.6 38 161-201 303-340 (415)
413 KOG3630 Nuclear pore complex, 94.2 0.48 1E-05 41.7 8.9 71 166-248 156-226 (1405)
414 KOG1916 Nuclear protein, conta 94.1 0.12 2.6E-06 44.1 5.2 136 16-199 128-266 (1283)
415 PF10168 Nup88: Nuclear pore c 94.1 3.5 7.7E-05 35.5 19.3 86 22-116 85-182 (717)
416 PF03022 MRJP: Major royal jel 94.0 2 4.2E-05 32.5 18.0 175 44-249 34-214 (287)
417 PF07569 Hira: TUP1-like enhan 93.9 0.71 1.5E-05 33.2 8.2 81 29-117 18-99 (219)
418 KOG1900 Nuclear pore complex, 93.7 1.8 3.9E-05 39.0 11.4 164 2-199 101-273 (1311)
419 PF15390 DUF4613: Domain of un 93.7 3.5 7.5E-05 34.1 14.0 129 76-248 55-184 (671)
420 KOG4460 Nuclear pore complex, 93.5 3.5 7.7E-05 33.6 11.8 80 167-250 105-198 (741)
421 PF12657 TFIIIC_delta: Transcr 93.4 1.7 3.8E-05 29.9 10.0 36 79-114 87-122 (173)
422 PF08728 CRT10: CRT10; InterP 93.3 3.4 7.3E-05 35.3 12.0 131 24-197 103-245 (717)
423 PHA02790 Kelch-like protein; P 93.2 4 8.7E-05 33.4 15.5 26 94-119 362-390 (480)
424 KOG1916 Nuclear protein, conta 93.1 0.083 1.8E-06 45.0 2.7 75 165-249 180-264 (1283)
425 PF14870 PSII_BNR: Photosynthe 92.9 3.3 7.1E-05 31.5 17.4 152 19-195 142-301 (302)
426 PF07995 GSDH: Glucose / Sorbo 92.8 3.4 7.4E-05 31.9 11.0 111 24-146 4-133 (331)
427 KOG1897 Damage-specific DNA bi 92.6 6.9 0.00015 34.5 18.9 105 94-199 498-614 (1096)
428 KOG2377 Uncharacterized conser 92.4 4.7 0.0001 32.3 13.4 103 76-234 65-167 (657)
429 PF10647 Gmad1: Lipoprotein Lp 92.3 3.5 7.7E-05 30.4 17.9 147 79-239 25-184 (253)
430 PF07676 PD40: WD40-like Beta 92.2 0.74 1.6E-05 22.5 5.2 30 20-49 7-38 (39)
431 KOG4499 Ca2+-binding protein R 91.5 4.1 8.9E-05 29.5 16.0 51 178-237 221-271 (310)
432 KOG2280 Vacuolar assembly/sort 91.1 9 0.00019 32.8 16.7 79 43-142 63-143 (829)
433 KOG3630 Nuclear pore complex, 91.0 0.71 1.5E-05 40.8 5.9 102 22-143 156-260 (1405)
434 PF15390 DUF4613: Domain of un 90.8 3.9 8.5E-05 33.8 9.4 108 19-143 54-172 (671)
435 TIGR03606 non_repeat_PQQ dehyd 90.7 7.9 0.00017 31.4 13.0 120 21-147 29-166 (454)
436 COG5167 VID27 Protein involved 90.3 8.8 0.00019 31.4 11.9 131 4-198 494-632 (776)
437 PF12768 Rax2: Cortical protei 90.3 6.3 0.00014 29.7 10.9 52 2-55 18-75 (281)
438 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.3 9.5 0.00021 31.7 19.0 102 2-122 81-198 (527)
439 TIGR02604 Piru_Ver_Nterm putat 90.2 7.7 0.00017 30.5 16.1 18 22-40 14-31 (367)
440 PF11715 Nup160: Nucleoporin N 90.2 0.56 1.2E-05 39.0 4.7 39 22-61 215-257 (547)
441 COG3204 Uncharacterized protei 89.9 6.8 0.00015 29.4 12.0 122 78-248 86-208 (316)
442 PF07250 Glyoxal_oxid_N: Glyox 89.7 2.6 5.5E-05 30.9 7.1 87 3-104 49-138 (243)
443 PF14870 PSII_BNR: Photosynthe 89.5 7.8 0.00017 29.5 15.2 150 78-247 145-301 (302)
444 PHA02790 Kelch-like protein; P 89.3 11 0.00024 31.0 15.7 25 94-118 318-344 (480)
445 PF01011 PQQ: PQQ enzyme repea 89.1 1.1 2.5E-05 21.8 3.6 28 36-63 2-29 (38)
446 PHA03098 kelch-like protein; P 88.7 13 0.00028 31.0 13.9 22 179-200 487-513 (534)
447 TIGR03074 PQQ_membr_DH membran 88.5 5.6 0.00012 34.7 9.3 93 44-142 641-740 (764)
448 TIGR02276 beta_rpt_yvtn 40-res 88.4 1.9 4.2E-05 21.2 5.8 23 178-200 1-24 (42)
449 KOG2377 Uncharacterized conser 88.2 12 0.00026 30.1 10.3 66 164-239 65-130 (657)
450 PF12657 TFIIIC_delta: Transcr 87.7 7.2 0.00016 26.9 9.9 34 166-199 86-122 (173)
451 PF10214 Rrn6: RNA polymerase 87.5 17 0.00037 32.0 11.7 105 22-137 146-257 (765)
452 KOG1900 Nuclear pore complex, 87.1 13 0.00028 34.0 10.6 80 163-249 176-271 (1311)
453 smart00564 PQQ beta-propeller 87.0 2 4.3E-05 19.8 4.0 26 95-120 6-31 (33)
454 PRK13684 Ycf48-like protein; P 86.8 13 0.00028 28.9 16.4 149 21-196 172-329 (334)
455 TIGR03074 PQQ_membr_DH membran 86.8 21 0.00045 31.3 19.1 82 36-122 262-353 (764)
456 COG4590 ABC-type uncharacteriz 86.8 13 0.00029 29.9 9.5 171 12-249 212-385 (733)
457 PF14781 BBS2_N: Ciliary BBSom 85.9 7.6 0.00017 25.4 13.2 74 26-116 3-84 (136)
458 KOG2247 WD40 repeat-containing 84.4 0.14 3E-06 40.6 -1.8 141 25-242 38-180 (615)
459 KOG1983 Tomosyn and related SN 83.5 29 0.00063 31.6 11.3 31 21-52 35-65 (993)
460 PF11715 Nup160: Nucleoporin N 83.4 3.9 8.5E-05 34.1 6.0 25 179-203 229-253 (547)
461 KOG2109 WD40 repeat protein [G 82.4 1.2 2.5E-05 37.1 2.5 91 4-105 299-390 (788)
462 KOG3616 Selective LIM binding 81.2 5.7 0.00012 34.0 6.0 36 20-56 13-48 (1636)
463 PF13449 Phytase-like: Esteras 81.2 23 0.0005 27.4 12.1 112 23-142 86-230 (326)
464 PF14583 Pectate_lyase22: Olig 80.9 26 0.00056 27.8 16.0 122 2-145 170-301 (386)
465 COG5276 Uncharacterized conser 80.4 23 0.0005 26.9 16.9 123 95-229 96-223 (370)
466 PRK10115 protease 2; Provision 79.2 42 0.00091 29.2 22.6 99 23-142 128-238 (686)
467 PF03088 Str_synth: Strictosid 78.3 12 0.00027 22.5 5.5 43 186-239 33-75 (89)
468 TIGR03547 muta_rot_YjhT mutatr 77.9 31 0.00066 26.9 16.2 11 231-241 321-331 (346)
469 PLN00033 photosystem II stabil 77.9 34 0.00074 27.4 17.2 106 77-195 280-396 (398)
470 TIGR03118 PEPCTERM_chp_1 conse 77.7 28 0.00061 26.6 8.0 72 40-123 218-289 (336)
471 PF14781 BBS2_N: Ciliary BBSom 77.1 18 0.00039 23.8 9.2 69 178-249 8-80 (136)
472 PF01436 NHL: NHL repeat; Int 75.4 6.2 0.00013 17.6 4.6 25 168-195 4-28 (28)
473 PF13449 Phytase-like: Esteras 75.3 36 0.00078 26.4 17.3 90 21-118 19-124 (326)
474 PF12341 DUF3639: Protein of u 74.8 6.5 0.00014 17.6 3.4 25 23-50 3-27 (27)
475 PF05935 Arylsulfotrans: Aryls 74.5 48 0.001 27.4 16.5 77 4-102 132-208 (477)
476 PF01731 Arylesterase: Arylest 74.2 16 0.00035 21.8 5.5 32 22-53 54-85 (86)
477 PF08801 Nucleoporin_N: Nup133 74.0 45 0.00098 26.9 11.0 32 165-199 189-220 (422)
478 KOG3616 Selective LIM binding 73.3 13 0.00028 32.1 5.9 33 165-200 14-46 (1636)
479 PF11635 Med16: Mediator compl 73.1 66 0.0014 28.4 16.9 77 165-245 259-345 (753)
480 PF13570 PQQ_3: PQQ-like domai 72.5 9.7 0.00021 18.5 4.8 18 36-53 23-40 (40)
481 PF14779 BBS1: Ciliary BBSome 71.9 38 0.00083 25.2 7.5 75 20-110 175-255 (257)
482 COG4257 Vgb Streptogramin lyas 70.9 43 0.00093 25.3 15.3 153 23-200 63-220 (353)
483 PF14779 BBS1: Ciliary BBSome 69.3 39 0.00086 25.1 7.0 74 164-247 175-255 (257)
484 PF03088 Str_synth: Strictosid 69.2 15 0.00032 22.2 4.2 42 40-101 33-74 (89)
485 KOG3522 Predicted guanine nucl 68.8 70 0.0015 28.3 9.1 169 6-244 567-742 (925)
486 PF14727 PHTB1_N: PTHB1 N-term 68.0 63 0.0014 26.1 15.8 60 34-113 145-204 (418)
487 PF12768 Rax2: Cortical protei 67.9 51 0.0011 25.0 9.3 60 164-236 35-105 (281)
488 smart00036 CNH Domain found in 67.3 54 0.0012 25.1 7.9 61 179-249 12-72 (302)
489 PF03022 MRJP: Major royal jel 65.6 57 0.0012 24.8 16.7 59 2-60 36-104 (287)
490 KOG2247 WD40 repeat-containing 64.3 3.1 6.7E-05 33.5 0.8 87 1-109 98-184 (615)
491 KOG2109 WD40 repeat protein [G 64.1 1.8 3.9E-05 36.0 -0.5 40 155-197 305-345 (788)
492 PF02333 Phytase: Phytase; In 63.5 75 0.0016 25.3 15.0 143 1-199 128-291 (381)
493 KOG1898 Splicing factor 3b, su 62.0 1.3E+02 0.0028 27.6 17.0 99 2-120 855-969 (1205)
494 PF07995 GSDH: Glucose / Sorbo 61.5 75 0.0016 24.7 13.6 26 80-112 4-29 (331)
495 TIGR03054 photo_alph_chp1 puta 60.9 45 0.00098 22.0 6.7 76 36-119 43-119 (135)
496 KOG1520 Predicted alkaloid syn 60.8 83 0.0018 24.9 14.1 43 186-239 195-237 (376)
497 COG3823 Glutamine cyclotransfe 60.7 61 0.0013 23.4 8.4 97 5-121 116-212 (262)
498 PLN02153 epithiospecifier prot 56.5 93 0.002 24.2 17.7 22 33-55 86-112 (341)
499 PLN00033 photosystem II stabil 56.5 1E+02 0.0023 24.8 16.7 140 94-247 249-396 (398)
500 COG4590 ABC-type uncharacteriz 55.0 1E+02 0.0023 25.2 7.4 36 161-200 216-251 (733)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.4e-41 Score=239.12 Aligned_cols=219 Identities=20% Similarity=0.255 Sum_probs=175.6
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
|+|+||+.+..++.+.+ +|...|.|++|+|||+ .|++|+.||+|++||.++|+++..--.+ |...|
T Consensus 138 TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg~~~g~~l~g------------H~K~I 203 (480)
T KOG0271|consen 138 TVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTGQQIGRALRG------------HKKWI 203 (480)
T ss_pred eEEeeccCCCCcceeec-CCccEEEEEEECCCcc-hhhccccCCeEEEecCCCCCcccccccC------------cccce
Confidence 79999999999999999 9999999999999999 8999999999999999998876544334 67778
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe-----------------------------------------
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS----------------------------------------- 119 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~----------------------------------------- 119 (250)
++++|.|.... +..++|++++.||.++|||+..+.++.
T Consensus 204 t~Lawep~hl~-p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r 282 (480)
T KOG0271|consen 204 TALAWEPLHLV-PPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCR 282 (480)
T ss_pred eEEeecccccC-CCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHH
Confidence 88888775332 233455555555555555554321110
Q ss_pred ------------------------------------------------------------------------------ec
Q 025649 120 ------------------------------------------------------------------------------RS 121 (250)
Q Consensus 120 ------------------------------------------------------------------------------~~ 121 (250)
..
T Consensus 283 ~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r 362 (480)
T KOG0271|consen 283 ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR 362 (480)
T ss_pred hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh
Confidence 00
Q ss_pred cCCCCCCccceeecccceeEEEeeeee----eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEec
Q 025649 122 KSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 197 (250)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~ 197 (250)
...+...+..+.|+||+++++ .+++| .+.....+.+..|+||-+.|+.++|+ .|.++|++||.|.++++||+
T Consensus 363 mtgHq~lVn~V~fSPd~r~IA-SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws---aDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 363 MTGHQALVNHVSFSPDGRYIA-SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS---ADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred hhchhhheeeEEECCCccEEE-EeecccceeeeeCCCcchhhhhhhccceeEEEEec---cCccEEEEcCCCceEEEEEe
Confidence 011224567789999999999 44444 34567778889999999999999999 89999999999999999999
Q ss_pred CCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 198 SRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
++. ++...+.+|...|+++.|+| ||+.+++|+.|..+++|.
T Consensus 439 ~tk---------Kl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 439 RTK---------KLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eee---------eecccCCCCCceEEEEEecC-CCceeecCCCceEEEeec
Confidence 997 67677889999999999998 999999999999999995
No 2
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.5e-39 Score=218.68 Aligned_cols=215 Identities=15% Similarity=0.178 Sum_probs=189.0
Q ss_pred cEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 2 WQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 2 i~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
|||||+.++. ++.++. +|+..|+++.|..+|+ .++|||+||+++|||++...+.+.++ ++.+
T Consensus 63 vRlyD~~S~np~Pv~t~e-~h~kNVtaVgF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~--------------~~sp 126 (311)
T KOG0315|consen 63 VRLYDLNSNNPNPVATFE-GHTKNVTAVGFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQ--------------HNSP 126 (311)
T ss_pred eEEEEccCCCCCceeEEe-ccCCceEEEEEeecCe-EEEecCCCceEEEEeccCcccchhcc--------------CCCC
Confidence 8999999765 578899 9999999999999999 69999999999999999988888877 6789
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee------eeeecc--
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSG-- 151 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-- 151 (250)
|+++..+| +...|++|.++|.|++||+.+..............+.++...|||.+++.+. .|+...
T Consensus 127 Vn~vvlhp------nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~ 200 (311)
T KOG0315|consen 127 VNTVVLHP------NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ 200 (311)
T ss_pred cceEEecC------CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC
Confidence 99999999 9999999999999999999998777777666678999999999999998522 233332
Q ss_pred -CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCC
Q 025649 152 -GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT 230 (250)
Q Consensus 152 -~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 230 (250)
...++++.+++.|.+.+..+.+| |++++|+++|.|.+++||+..+.- +.-..+.+|...++..+|+.
T Consensus 201 ~~s~l~P~~k~~ah~~~il~C~lS---Pd~k~lat~ssdktv~iwn~~~~~--------kle~~l~gh~rWvWdc~FS~- 268 (311)
T KOG0315|consen 201 TASELEPVHKFQAHNGHILRCLLS---PDVKYLATCSSDKTVKIWNTDDFF--------KLELVLTGHQRWVWDCAFSA- 268 (311)
T ss_pred ccccceEhhheecccceEEEEEEC---CCCcEEEeecCCceEEEEecCCce--------eeEEEeecCCceEEeeeecc-
Confidence 34667788999999999999999 899999999999999999998861 33446789999999999996
Q ss_pred CCCeEEEeeCCceEEEEeCC
Q 025649 231 ESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 231 ~~~~l~s~~~d~~i~vw~~~ 250 (250)
||+||+||+.|+.+++|+++
T Consensus 269 dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 269 DGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred CccEEEecCCCCceeecccc
Confidence 99999999999999999974
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.7e-41 Score=241.12 Aligned_cols=216 Identities=21% Similarity=0.227 Sum_probs=191.8
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCC-CeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWK-PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+++||+..+...+++|+ ||++.|.++.|+|.. ...|+||+.||++++|++.+..++..+. + |...
T Consensus 198 ~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~-g------------H~~R 263 (459)
T KOG0272|consen 198 LVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE-G------------HLAR 263 (459)
T ss_pred ceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh-c------------chhh
Confidence 47899999999999999 999999999999983 3379999999999999999888888887 4 6789
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee---eeeccCeeee
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI---LDQSGGKRLH 156 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 156 (250)
|..++|+| +|++|++++.|.+-++||++++........+ ...+.+++|.|||..+++.|. ...|+.+...
T Consensus 264 Vs~VafHP------sG~~L~TasfD~tWRlWD~~tk~ElL~QEGH-s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr 336 (459)
T KOG0272|consen 264 VSRVAFHP------SGKFLGTASFDSTWRLWDLETKSELLLQEGH-SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR 336 (459)
T ss_pred heeeeecC------CCceeeecccccchhhcccccchhhHhhccc-ccccceeEecCCCceeeccCccchhheeecccCc
Confidence 99999999 9999999999999999999998776655554 488999999999999995322 2334566777
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
++..+.+|..+|.+|+|+ |+|..|||||.|++++|||++.. ..+..+.+|.+-|..+.|.|..|.+|+
T Consensus 337 ~im~L~gH~k~I~~V~fs---PNGy~lATgs~Dnt~kVWDLR~r---------~~ly~ipAH~nlVS~Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 337 CIMFLAGHIKEILSVAFS---PNGYHLATGSSDNTCKVWDLRMR---------SELYTIPAHSNLVSQVKYSPQEGYFLV 404 (459)
T ss_pred EEEEecccccceeeEeEC---CCceEEeecCCCCcEEEeeeccc---------ccceecccccchhhheEecccCCeEEE
Confidence 888999999999999999 89999999999999999999997 556788899999999999998899999
Q ss_pred EeeCCceEEEEeC
Q 025649 237 VCDTSKVVKVYSI 249 (250)
Q Consensus 237 s~~~d~~i~vw~~ 249 (250)
|++.|++++||.-
T Consensus 405 TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 405 TASYDNTVKIWST 417 (459)
T ss_pred EcccCcceeeecC
Confidence 9999999999963
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.7e-40 Score=238.85 Aligned_cols=214 Identities=19% Similarity=0.214 Sum_probs=192.2
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
|+++|++.+..++..|. +|...|..++|+|+|+ +|+|++.|.+-++||++++..+..-. + |...|
T Consensus 242 tvklw~~~~e~~l~~l~-gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QE-G------------Hs~~v 306 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQDLE-GHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQE-G------------HSKGV 306 (459)
T ss_pred ceeeeccCCCcchhhhh-cchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhc-c------------ccccc
Confidence 68999999989999999 9999999999999999 99999999999999999987765544 4 78999
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---eeeeeccCeeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSGGKRLHL 157 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 157 (250)
.+++|.| +|.++++|+.|..-+|||++++.++..+..+ ...|..++|+|+|-.+++. +....|+.+.-..
T Consensus 307 ~~iaf~~------DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH-~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 307 FSIAFQP------DGSLAATGGLDSLGRVWDLRTGRCIMFLAGH-IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred ceeEecC------CCceeeccCccchhheeecccCcEEEEeccc-ccceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence 9999999 9999999999999999999999999988884 5899999999999999962 2233344444445
Q ss_pred eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE
Q 025649 158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV 237 (250)
Q Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 237 (250)
+..+.+|.+-|+.|.|+| ..|.+|+|++.|++++||..++. .++..+.+|.+.|.++..++ |++.|+|
T Consensus 380 ly~ipAH~nlVS~Vk~~p--~~g~fL~TasyD~t~kiWs~~~~---------~~~ksLaGHe~kV~s~Dis~-d~~~i~t 447 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSP--QEGYFLVTASYDNTVKIWSTRTW---------SPLKSLAGHEGKVISLDISP-DSQAIAT 447 (459)
T ss_pred ceecccccchhhheEecc--cCCeEEEEcccCcceeeecCCCc---------ccchhhcCCccceEEEEecc-CCceEEE
Confidence 789999999999999994 37999999999999999999998 67788999999999999997 9999999
Q ss_pred eeCCceEEEEe
Q 025649 238 CDTSKVVKVYS 248 (250)
Q Consensus 238 ~~~d~~i~vw~ 248 (250)
++.|+++++|.
T Consensus 448 ~s~DRT~KLW~ 458 (459)
T KOG0272|consen 448 SSFDRTIKLWR 458 (459)
T ss_pred eccCceeeecc
Confidence 99999999995
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.4e-38 Score=241.79 Aligned_cols=201 Identities=19% Similarity=0.221 Sum_probs=178.2
Q ss_pred eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649 11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM 90 (250)
Q Consensus 11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (250)
...+++. ||.++|..+.|+|+.+ +|++||.|+++|+|.+.+..++..++ + |..+|+.+.|+|
T Consensus 442 ~~~~~L~-GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~s~~V~y~-G------------H~~PVwdV~F~P--- 503 (707)
T KOG0263|consen 442 GTSRTLY-GHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTWSCLVIYK-G------------HLAPVWDVQFAP--- 503 (707)
T ss_pred ceeEEee-cCCCceeeeeeccccc-ceeeccCCcceeeeecccceeEEEec-C------------CCcceeeEEecC---
Confidence 3445677 9999999999999999 99999999999999999999888887 5 688999999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCeeeeeeccccCc
Q 025649 91 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKRLHLDYSVGGH 164 (250)
Q Consensus 91 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~h 164 (250)
.|.++|+++.|++.++|..........+..+ -..+.|+.|+|+..++++ +..||. .+...++.|.||
T Consensus 504 ---~GyYFatas~D~tArLWs~d~~~PlRifagh-lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv---~~G~~VRiF~GH 576 (707)
T KOG0263|consen 504 ---RGYYFATASHDQTARLWSTDHNKPLRIFAGH-LSDVDCVSFHPNSNYVATGSSDRTVRLWDV---STGNSVRIFTGH 576 (707)
T ss_pred ---CceEEEecCCCceeeeeecccCCchhhhccc-ccccceEEECCcccccccCCCCceEEEEEc---CCCcEEEEecCC
Confidence 8999999999999999999886655544444 588999999999999994 333444 444557789999
Q ss_pred cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649 165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV 244 (250)
Q Consensus 165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 244 (250)
.++|.+++|| |+|++|++|+.||.|++||+.++ .++..+.+|++.|.++.|+. ||..|++|+.|.+|
T Consensus 577 ~~~V~al~~S---p~Gr~LaSg~ed~~I~iWDl~~~---------~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 577 KGPVTALAFS---PCGRYLASGDEDGLIKIWDLANG---------SLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSV 643 (707)
T ss_pred CCceEEEEEc---CCCceEeecccCCcEEEEEcCCC---------cchhhhhcccCceeEEEEec-CCCEEEecCCCCeE
Confidence 9999999999 89999999999999999999998 77788999999999999996 99999999999999
Q ss_pred EEEeC
Q 025649 245 KVYSI 249 (250)
Q Consensus 245 ~vw~~ 249 (250)
++||+
T Consensus 644 ~lWD~ 648 (707)
T KOG0263|consen 644 RLWDL 648 (707)
T ss_pred EEEEc
Confidence 99997
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-37 Score=221.17 Aligned_cols=213 Identities=20% Similarity=0.270 Sum_probs=178.5
Q ss_pred eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649 12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML 91 (250)
Q Consensus 12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (250)
+...+. ||.++|.|++|+|+|+ .|++|+.|.++|+||+.+..+..+.+ + |..+|.+++|+|
T Consensus 107 CssS~~-GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t~K-g------------H~~WVlcvawsP---- 167 (480)
T KOG0271|consen 107 CSSSIA-GHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFTCK-G------------HKNWVLCVAWSP---- 167 (480)
T ss_pred eccccC-CCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCcceeec-C------------CccEEEEEEECC----
Confidence 445677 9999999999999999 89999999999999999998888887 4 689999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc-----cceeEEE---eeeeeeccCeeeeeeccccC
Q 025649 92 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK-----VNIRDAE---MEILDQSGGKRLHLDYSVGG 163 (250)
Q Consensus 92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 163 (250)
|++.||+|+.||+|++||..+++........+...|.+++|.| ..+++++ .+...+++.....++..+.+
T Consensus 168 --Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg 245 (480)
T KOG0271|consen 168 --DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG 245 (480)
T ss_pred --CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc
Confidence 9999999999999999999999998887777789999999865 5667774 23344455566667889999
Q ss_pred ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee---------------------------------------
Q 025649 164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ--------------------------------------- 204 (250)
Q Consensus 164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------------------------------------- 204 (250)
|..+|+|+.|- ...++++||.|++|++|+...+....
T Consensus 246 HT~~VTCvrwG----G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~ 321 (480)
T KOG0271|consen 246 HTASVTCVRWG----GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ 321 (480)
T ss_pred CccceEEEEEc----CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence 99999999996 45699999999999999987653221
Q ss_pred -------------------------------cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 205 -------------------------------TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 205 -------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.....+++..+.+|...|+.+.|+| |+++++++|.|..|++|+.+
T Consensus 322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~ 397 (480)
T KOG0271|consen 322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGR 397 (480)
T ss_pred HHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCC
Confidence 0011233446778999999999998 99999999999999999853
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-35 Score=201.51 Aligned_cols=213 Identities=19% Similarity=0.257 Sum_probs=179.9
Q ss_pred CcEEEEcc-----cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649 1 MWQIIDIR-----QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 1 ti~iwd~~-----~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
++.+|++. .|..++.|+ ||...|..+..+++|+ +.++++.|+++++||+.+++..+.|. +
T Consensus 39 ~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~~t~~f~-G------------ 103 (315)
T KOG0279|consen 39 TIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGN-FALSASWDGTLRLWDLATGESTRRFV-G------------ 103 (315)
T ss_pred EEEEEEeccCccccCceeeeee-ccceEecceEEccCCc-eEEeccccceEEEEEecCCcEEEEEE-e------------
Confidence 46788775 567889999 9999999999999999 89999999999999999998888776 4
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeeccc--ceeEEEeeeeee----
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV--NIRDAEMEILDQ---- 149 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---- 149 (250)
|...|.+++|+| +++.+++|+.|++|++|+...+.........+...+.|+.|+|+ ..+++ .+.+|.
T Consensus 104 H~~dVlsva~s~------dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv-s~s~DktvKv 176 (315)
T KOG0279|consen 104 HTKDVLSVAFST------DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV-SASWDKTVKV 176 (315)
T ss_pred cCCceEEEEecC------CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE-EccCCceEEE
Confidence 688999999999 99999999999999999998766555544444789999999998 55555 555554
Q ss_pred ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649 150 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 229 (250)
Q Consensus 150 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 229 (250)
++....+....+.+|.+.++.+++| |||..+++|+.||.+.+||++.++ . ....+|...|.+++|+|
T Consensus 177 Wnl~~~~l~~~~~gh~~~v~t~~vS---pDGslcasGgkdg~~~LwdL~~~k---------~-lysl~a~~~v~sl~fsp 243 (315)
T KOG0279|consen 177 WNLRNCQLRTTFIGHSGYVNTVTVS---PDGSLCASGGKDGEAMLWDLNEGK---------N-LYSLEAFDIVNSLCFSP 243 (315)
T ss_pred EccCCcchhhccccccccEEEEEEC---CCCCEEecCCCCceEEEEEccCCc---------e-eEeccCCCeEeeEEecC
Confidence 4556777788999999999999999 999999999999999999999974 2 35578889999999998
Q ss_pred CCCCeEEEeeCCceEEEEeCC
Q 025649 230 TESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 230 ~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+. +.+.+..+..|+|||+.
T Consensus 244 -nr-ywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 244 -NR-YWLCAATATSIKIWDLE 262 (315)
T ss_pred -Cc-eeEeeccCCceEEEecc
Confidence 43 55555556679999974
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-36 Score=213.81 Aligned_cols=217 Identities=18% Similarity=0.214 Sum_probs=190.2
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
||++||..++++...|+ ||++.|.+|+|+..|+ +|++++.|-.+++||..+ .++++.+. + |...
T Consensus 131 tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk-~l~tcSsDl~~~LWd~~~~~~c~ks~~-g------------h~h~ 195 (406)
T KOG0295|consen 131 TIKVFDTETGELERSLR-GHTDSVFDISFDASGK-YLATCSSDLSAKLWDFDTFFRCIKSLI-G------------HEHG 195 (406)
T ss_pred eEEEEEccchhhhhhhh-ccccceeEEEEecCcc-EEEecCCccchhheeHHHHHHHHHHhc-C------------cccc
Confidence 68999999999999999 9999999999999999 999999999999999976 34444444 3 5778
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeee
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRL 155 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 155 (250)
|.++.|-| .|.++++++.|.+|+.|++.++.++..+..+. ..+..+..+.||..+++ +..+ .|.....
T Consensus 196 vS~V~f~P------~gd~ilS~srD~tik~We~~tg~cv~t~~~h~-ewvr~v~v~~DGti~As-~s~dqtl~vW~~~t~ 267 (406)
T KOG0295|consen 196 VSSVFFLP------LGDHILSCSRDNTIKAWECDTGYCVKTFPGHS-EWVRMVRVNQDGTIIAS-CSNDQTLRVWVVATK 267 (406)
T ss_pred eeeEEEEe------cCCeeeecccccceeEEecccceeEEeccCch-HhEEEEEecCCeeEEEe-cCCCceEEEEEeccc
Confidence 99999999 89999999999999999999999999988875 58899999999999994 4333 3345666
Q ss_pred eeeccccCccccEEEEEeecCC---------C---CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649 156 HLDYSVGGHTAAASCVAFSMFG---------E---RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 223 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~---------~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (250)
++...+..|+-+|.|++|.|.. + .++++.+++.|++|++||+.++ .++..+.+|.+.|.
T Consensus 268 ~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---------~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 268 QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---------MCLFTLVGHDNWVR 338 (406)
T ss_pred hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---------eEEEEEecccceee
Confidence 6778899999999999998721 1 2369999999999999999998 78889999999999
Q ss_pred EEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 224 WLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 224 ~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.++|+| .|+||+++.+|+++++||++
T Consensus 339 ~~af~p-~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 339 GVAFSP-GGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred eeEEcC-CCeEEEEEecCCcEEEEEec
Confidence 999998 89999999999999999974
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-34 Score=199.16 Aligned_cols=224 Identities=17% Similarity=0.167 Sum_probs=170.3
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
|+++||+++++..+.|. ||...|.+++|++|.+ .++|||.|.+|++|++. +.+..++..+ .+.+.|
T Consensus 86 ~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~-g~ck~t~~~~-----------~~~~WV 151 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTL-GVCKYTIHED-----------SHREWV 151 (315)
T ss_pred eEEEEEecCCcEEEEEE-ecCCceEEEEecCCCc-eeecCCCcceeeeeeec-ccEEEEEecC-----------CCcCcE
Confidence 58999999999999999 9999999999999999 89999999999999996 5555555433 026899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLH 156 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 156 (250)
.++.|+| ..+.-+|++++.|++|++||+++-+.......+ ...+..+++||||...++ |..+ .++....+
T Consensus 152 scvrfsP----~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh-~~~v~t~~vSpDGslcas-Ggkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 152 SCVRFSP----NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH-SGYVNTVTVSPDGSLCAS-GGKDGEAMLWDLNEGK 225 (315)
T ss_pred EEEEEcC----CCCCcEEEEccCCceEEEEccCCcchhhccccc-cccEEEEEECCCCCEEec-CCCCceEEEEEccCCc
Confidence 9999999 223789999999999999999987766655554 588999999999999985 3222 23344444
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
.+..+ +|...|.+++|+ |+. +.+++..+..|+|||+.++..+........-.....-.....+++|++ ||+.|+
T Consensus 226 ~lysl-~a~~~v~sl~fs---pnr-ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf 299 (315)
T KOG0279|consen 226 NLYSL-EAFDIVNSLCFS---PNR-YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLF 299 (315)
T ss_pred eeEec-cCCCeEeeEEec---CCc-eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEE
Confidence 45555 467889999999 764 444445566799999999866532111111001112233467789997 999999
Q ss_pred EeeCCceEEEEeCC
Q 025649 237 VCDTSKVVKVYSIS 250 (250)
Q Consensus 237 s~~~d~~i~vw~~~ 250 (250)
+|-.|+.|++|.+.
T Consensus 300 ~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 300 AGYTDNVIRVWQVA 313 (315)
T ss_pred eeecCCcEEEEEee
Confidence 99999999999863
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.9e-34 Score=198.95 Aligned_cols=207 Identities=15% Similarity=0.192 Sum_probs=177.7
Q ss_pred eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649 11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM 90 (250)
Q Consensus 11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (250)
+..++|+ ||.+.|.++.|++|++ +|+++|.||.+.|||.-+...++.++.+ ..+|...+|+|
T Consensus 46 ~~rr~Lk-GH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~haipl~-------------s~WVMtCA~sP--- 107 (343)
T KOG0286|consen 46 RTRRTLK-GHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHAIPLP-------------SSWVMTCAYSP--- 107 (343)
T ss_pred eeEEEec-ccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeEEecC-------------ceeEEEEEECC---
Confidence 3447899 9999999999999999 8999999999999999888777777755 68999999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCCc--e---eEeeccCCCCCCccceeecccceeEEEee--eeeeccCeeeeeeccccC
Q 025649 91 LDKTNKICVVAKGDGVVDVINIESE--L---NISRSKSTTKPLKGSQSTSKVNIRDAEME--ILDQSGGKRLHLDYSVGG 163 (250)
Q Consensus 91 ~~~~~~~l~~~~~d~~i~~~d~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 163 (250)
.++.+|.|+-|+...||++.+. + ...+....+...+.+..|-+|+..+-..| ..-.|+.+..+.+..|.+
T Consensus 108 ---Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 108 ---SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred ---CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC
Confidence 9999999999999999999854 2 22333344558899999999887776432 334455666677789999
Q ss_pred ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCce
Q 025649 164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV 243 (250)
Q Consensus 164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 243 (250)
|.+.|.++.++| .+++.+++|+-|+..++||++.+ ...+.+.+|+..|+++.|+| +|.-|++|+.|++
T Consensus 185 H~gDV~slsl~p--~~~ntFvSg~cD~~aklWD~R~~---------~c~qtF~ghesDINsv~ffP-~G~afatGSDD~t 252 (343)
T KOG0286|consen 185 HTGDVMSLSLSP--SDGNTFVSGGCDKSAKLWDVRSG---------QCVQTFEGHESDINSVRFFP-SGDAFATGSDDAT 252 (343)
T ss_pred CcccEEEEecCC--CCCCeEEecccccceeeeeccCc---------ceeEeecccccccceEEEcc-CCCeeeecCCCce
Confidence 999999999994 38999999999999999999998 66778999999999999998 8999999999999
Q ss_pred EEEEeCC
Q 025649 244 VKVYSIS 250 (250)
Q Consensus 244 i~vw~~~ 250 (250)
.++||++
T Consensus 253 cRlyDlR 259 (343)
T KOG0286|consen 253 CRLYDLR 259 (343)
T ss_pred eEEEeec
Confidence 9999986
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=218.40 Aligned_cols=214 Identities=18% Similarity=0.221 Sum_probs=190.3
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
+-||++.+...+.+.+ +|...+++++++|||+ +++||+.||.|+|||..++-|..+|.. |...|+
T Consensus 332 LlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFte-------------Hts~Vt 396 (893)
T KOG0291|consen 332 LLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTE-------------HTSGVT 396 (893)
T ss_pred EEEEEeeccceeeecc-ccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEecc-------------CCCceE
Confidence 4689998888888888 9999999999999999 999999999999999999999999983 588999
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-----eccCeeee
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-----QSGGKRLH 156 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 156 (250)
.+.|+. .++.+++++-||+|+.||+...+.-..+..+......+++..|.|..+. +|..| .|..++.+
T Consensus 397 ~v~f~~------~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~-AG~~d~F~IfvWS~qTGq 469 (893)
T KOG0291|consen 397 AVQFTA------RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVC-AGAQDSFEIFVWSVQTGQ 469 (893)
T ss_pred EEEEEe------cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEE-eeccceEEEEEEEeecCe
Confidence 999998 9999999999999999999999988888888888899999999999988 44433 34567888
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
.+..+.||+++|.+++|+ |.+..|+++|.|++|++||+-.. ........+...+..+.|.| +|+.++
T Consensus 470 llDiLsGHEgPVs~l~f~---~~~~~LaS~SWDkTVRiW~if~s---------~~~vEtl~i~sdvl~vsfrP-dG~ela 536 (893)
T KOG0291|consen 470 LLDILSGHEGPVSGLSFS---PDGSLLASGSWDKTVRIWDIFSS---------SGTVETLEIRSDVLAVSFRP-DGKELA 536 (893)
T ss_pred eeehhcCCCCcceeeEEc---cccCeEEeccccceEEEEEeecc---------CceeeeEeeccceeEEEEcC-CCCeEE
Confidence 889999999999999999 89999999999999999999875 22234456778899999998 999999
Q ss_pred EeeCCceEEEEeCC
Q 025649 237 VCDTSKVVKVYSIS 250 (250)
Q Consensus 237 s~~~d~~i~vw~~~ 250 (250)
++..||.|.+||..
T Consensus 537 VaTldgqItf~d~~ 550 (893)
T KOG0291|consen 537 VATLDGQITFFDIK 550 (893)
T ss_pred EEEecceEEEEEhh
Confidence 99999999999963
No 12
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.4e-35 Score=208.01 Aligned_cols=206 Identities=17% Similarity=0.260 Sum_probs=172.6
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
||+|||..+.++++.|. ||++.|.|+.|... .|++||.|.+|++||.++++++.++- + |.+.|
T Consensus 218 TikiWD~n~~~c~~~L~-GHtGSVLCLqyd~r---viisGSSDsTvrvWDv~tge~l~tli-h------------HceaV 280 (499)
T KOG0281|consen 218 TIKIWDKNSLECLKILT-GHTGSVLCLQYDER---VIVSGSSDSTVRVWDVNTGEPLNTLI-H------------HCEAV 280 (499)
T ss_pred ceEEeccccHHHHHhhh-cCCCcEEeeeccce---EEEecCCCceEEEEeccCCchhhHHh-h------------hccee
Confidence 79999999999999999 99999999998765 89999999999999999999998886 4 68899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE--eeccCCCCCCccceeecccceeEEEe---eeeeeccCeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI--SRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSGGKRL 155 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 155 (250)
..+.|+ +.++++++.|.++.+||+.+...+ ......+...+..+.|+.. ++++. .....+...+.
T Consensus 281 Lhlrf~--------ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 281 LHLRFS--------NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred EEEEEe--------CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc--eEEEecCCceEEEEeccce
Confidence 999987 578999999999999999875422 2223334466777777654 66632 22344456677
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
+.++++.+|+..|.|+.|. |+++++||.|.+|++||+..| .++..+.+|+.-|.++.| |.+.+
T Consensus 351 efvRtl~gHkRGIAClQYr-----~rlvVSGSSDntIRlwdi~~G---------~cLRvLeGHEeLvRciRF---d~krI 413 (499)
T KOG0281|consen 351 EFVRTLNGHKRGIACLQYR-----DRLVVSGSSDNTIRLWDIECG---------ACLRVLEGHEELVRCIRF---DNKRI 413 (499)
T ss_pred eeehhhhcccccceehhcc-----CeEEEecCCCceEEEEecccc---------HHHHHHhchHHhhhheee---cCcee
Confidence 8889999999999999874 799999999999999999999 677888999999999999 44579
Q ss_pred EEeeCCceEEEEeCC
Q 025649 236 VVCDTSKVVKVYSIS 250 (250)
Q Consensus 236 ~s~~~d~~i~vw~~~ 250 (250)
++|+.||+|++||+.
T Consensus 414 VSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQ 428 (499)
T ss_pred eeccccceEEEEecc
Confidence 999999999999973
No 13
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=207.25 Aligned_cols=215 Identities=18% Similarity=0.246 Sum_probs=183.9
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||++||+++.++. -...++|+.|+|++.+.+++|+.|+.|+.||+++++.++.+.. |-..|
T Consensus 281 ~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~-------------hLg~i 345 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR-------------HLGAI 345 (503)
T ss_pred eeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh-------------hhhhe
Confidence 48999999999999998 5667899999999966999999999999999999998888763 46789
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKR 154 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 154 (250)
..+.|-+ +++++++.+.|+.+++|+.+.+..+..+.........++..+|++..++. +.++.....-.
T Consensus 346 ~~i~F~~------~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 346 LDITFVD------EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred eeeEEcc------CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 9999998 99999999999999999999988777777776778899999999999883 22222222333
Q ss_pred eeeeccccCccc--cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649 155 LHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 155 ~~~~~~~~~h~~--~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
......+++|.. .-..+.|| |+|.+|++|+.||.+.+||.++. .++..+..|.+++..+.|+|...
T Consensus 420 ~nkkK~feGh~vaGys~~v~fS---pDG~~l~SGdsdG~v~~wdwkt~---------kl~~~lkah~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 420 LNKKKRFEGHSVAGYSCQVDFS---PDGRTLCSGDSDGKVNFWDWKTT---------KLVSKLKAHDQPCIGVDWHPVEP 487 (503)
T ss_pred cCHhhhhcceeccCceeeEEEc---CCCCeEEeecCCccEEEeechhh---------hhhhccccCCcceEEEEecCCCc
Confidence 344567788854 34567888 99999999999999999999997 77788899999999999999888
Q ss_pred CeEEEeeCCceEEEEe
Q 025649 233 ENLVVCDTSKVVKVYS 248 (250)
Q Consensus 233 ~~l~s~~~d~~i~vw~ 248 (250)
..+|+|+.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 8899999999999996
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-31 Score=182.60 Aligned_cols=219 Identities=12% Similarity=0.146 Sum_probs=175.3
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC--ccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|||+|...+|++.++++ -..+.|+.+...|+++ .|++++. ..||+||++++.+ +.++. + |.+
T Consensus 21 TIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~-~LAaa~~-qhvRlyD~~S~np~Pv~t~e-~------------h~k 84 (311)
T KOG0315|consen 21 TIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKK-DLAAAGN-QHVRLYDLNSNNPNPVATFE-G------------HTK 84 (311)
T ss_pred eeeeeehhcCeEEEEEe-cCccceeeEEEcCCcc-hhhhccC-CeeEEEEccCCCCCceeEEe-c------------cCC
Confidence 79999999999999999 6678999999999998 7777765 5899999998765 45554 2 578
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeeccCeee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRL 155 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 155 (250)
.|.++.|.. +|+.+++|++||+++|||++.......+... ..+.++..+|+...|++ .|....++....
T Consensus 85 NVtaVgF~~------dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 85 NVTAVGFQC------DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred ceEEEEEee------cCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 999999998 9999999999999999999995555555444 89999999999888874 222222222222
Q ss_pred eeeccc-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649 156 HLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 156 ~~~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 234 (250)
.+...+ ......|.+++.. |+|.+++.+...|..++|++-+.+.... -+++..+..|+.-+..+.++| |+++
T Consensus 157 ~c~~~liPe~~~~i~sl~v~---~dgsml~a~nnkG~cyvW~l~~~~~~s~---l~P~~k~~ah~~~il~C~lSP-d~k~ 229 (311)
T KOG0315|consen 157 SCTHELIPEDDTSIQSLTVM---PDGSMLAAANNKGNCYVWRLLNHQTASE---LEPVHKFQAHNGHILRCLLSP-DVKY 229 (311)
T ss_pred ccccccCCCCCcceeeEEEc---CCCcEEEEecCCccEEEEEccCCCcccc---ceEhhheecccceEEEEEECC-CCcE
Confidence 222222 2334679999999 8999999999999999999988544322 256677899999999999998 9999
Q ss_pred EEEeeCCceEEEEeCC
Q 025649 235 LVVCDTSKVVKVYSIS 250 (250)
Q Consensus 235 l~s~~~d~~i~vw~~~ 250 (250)
|+++|.|.+++||+.+
T Consensus 230 lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTD 245 (311)
T ss_pred EEeecCCceEEEEecC
Confidence 9999999999999863
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.6e-31 Score=184.37 Aligned_cols=210 Identities=17% Similarity=0.287 Sum_probs=178.1
Q ss_pred EEEEcccc------eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649 3 QIIDIRQH------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 3 ~iwd~~~~------~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
.||++.+. +..+.+. +|++-+.|+.|.+|+ .|+|+|.|.+..+||+++++.+..|. + |
T Consensus 122 siy~ls~~d~~g~~~v~r~l~-gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~-G------------H 185 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELA-GHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFH-G------------H 185 (343)
T ss_pred EEEecccccccccceeeeeec-CccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEec-C------------C
Confidence 57887754 4556788 999999999999977 59999999999999999999998887 4 6
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeec
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQS 150 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 150 (250)
...|.+++++| .+++.+++|+-|+..++||++.+...+.+..++ ..|..+.|.|+|.-+++ ...+|.+
T Consensus 186 ~gDV~slsl~p-----~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe-sDINsv~ffP~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 186 TGDVMSLSLSP-----SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE-SDINSVRFFPSGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred cccEEEEecCC-----CCCCeEEecccccceeeeeccCcceeEeecccc-cccceEEEccCCCeeeecCCCceeEEEeec
Confidence 88999999998 489999999999999999999998888888774 89999999999999984 2233333
Q ss_pred cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCC
Q 025649 151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT 230 (250)
Q Consensus 151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 230 (250)
...+... ..-..-..+|++++|| ..|++|++|..|.++.+||.-.+ +....+.+|++.|.++..+|
T Consensus 260 aD~~~a~-ys~~~~~~gitSv~FS---~SGRlLfagy~d~~c~vWDtlk~---------e~vg~L~GHeNRvScl~~s~- 325 (343)
T KOG0286|consen 260 ADQELAV-YSHDSIICGITSVAFS---KSGRLLFAGYDDFTCNVWDTLKG---------ERVGVLAGHENRVSCLGVSP- 325 (343)
T ss_pred CCcEEee-eccCcccCCceeEEEc---ccccEEEeeecCCceeEeecccc---------ceEEEeeccCCeeEEEEECC-
Confidence 3332221 1222345689999999 89999999999999999999887 67778889999999999998
Q ss_pred CCCeEEEeeCCceEEEEe
Q 025649 231 ESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 231 ~~~~l~s~~~d~~i~vw~ 248 (250)
||.-++|||.|..++||.
T Consensus 326 DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCcEEEecchhHheeecC
Confidence 999999999999999994
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.1e-33 Score=201.79 Aligned_cols=214 Identities=14% Similarity=0.156 Sum_probs=180.5
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
+.||+..+......++ +|.++|.++.|++++. .++||+.+|.|++|+.. ...++.++.+ |...|.
T Consensus 120 FtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpn-mnnVk~~~ah------------h~eaIR 184 (464)
T KOG0284|consen 120 FTLWNGTSFNFETILQ-AHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPN-MNNVKIIQAH------------HAEAIR 184 (464)
T ss_pred EEEecCceeeHHHHhh-hhcccceeEEEccCCC-EEEEcCCCceEEecccc-hhhhHHhhHh------------hhhhhh
Confidence 3567654433334455 9999999999999999 79999999999999985 4445555544 568999
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeee
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLD 158 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 158 (250)
+++|+| +...+++++.||+|+|||....+....+. .+.-.+.+++|+|.-.++++.+ ....++.+...++
T Consensus 185 dlafSp------nDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 185 DLAFSP------NDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred eeccCC------CCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence 999999 89999999999999999999876655553 3457899999999999998422 3344567788899
Q ss_pred ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649 159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 238 (250)
Q Consensus 159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 238 (250)
.++.+|+..|..+.|+ +++++|+|+|.|..++++|+++. +.+..+.+|...|+++.|+|-...+|.+|
T Consensus 258 ~tlh~HKntVl~~~f~---~n~N~Llt~skD~~~kv~DiR~m---------kEl~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKFN---PNGNWLLTGSKDQSCKVFDIRTM---------KELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred hhhhhccceEEEEEEc---CCCCeeEEccCCceEEEEehhHh---------HHHHHhhcchhhheeeccccccccceeec
Confidence 9999999999999999 89999999999999999999976 55578899999999999999888899999
Q ss_pred eCCceEEEEeC
Q 025649 239 DTSKVVKVYSI 249 (250)
Q Consensus 239 ~~d~~i~vw~~ 249 (250)
+.||.|..|.+
T Consensus 326 g~Dgsvvh~~v 336 (464)
T KOG0284|consen 326 GSDGSVVHWVV 336 (464)
T ss_pred cCCCceEEEec
Confidence 99999999975
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.8e-32 Score=211.32 Aligned_cols=215 Identities=21% Similarity=0.272 Sum_probs=179.8
Q ss_pred CcEEEEc-ccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDI-RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~-~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
||+|||+ ..+..+++++ +|...|++++|+|+++ ++++|+.|++|++||+++++++..+.. |...
T Consensus 226 tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~~-------------hs~~ 290 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKLKG-------------HSDG 290 (456)
T ss_pred eEEEeeccCCCeEEEEec-CCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEeeec-------------cCCc
Confidence 6899999 5668999999 9999999999999997 999999999999999999999999884 4789
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce--eEeeccCCCCC-CccceeecccceeEEEe---eeeeeccCe
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL--NISRSKSTTKP-LKGSQSTSKVNIRDAEM---EILDQSGGK 153 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~ 153 (250)
|.+++|++ ++++|++++.|+.|++||+.++. ........... .+.++.|+|++.+++.. +....++..
T Consensus 291 is~~~f~~------d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 291 ISGLAFSP------DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred eEEEEECC------CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 99999999 99999999999999999999998 44555555444 78999999999999942 123334445
Q ss_pred eeeeeccccCccccEEEE---EeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-CCceeEEEecC
Q 025649 154 RLHLDYSVGGHTAAASCV---AFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTP 229 (250)
Q Consensus 154 ~~~~~~~~~~h~~~v~~~---~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~ 229 (250)
.......+.+|...+.|+ ..+ +.+.++++|+.|+.|++||+.++ ..+..+.+| ...+..+.++|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~sg~~d~~v~~~~~~s~---------~~~~~l~~h~~~~~~~~~~~~ 432 (456)
T KOG0266|consen 365 SGKSVGTYTGHSNLVRCIFSPTLS---TGGKLIYSGSEDGSVYVWDSSSG---------GILQRLEGHSKAAVSDLSSHP 432 (456)
T ss_pred CCcceeeecccCCcceeEeccccc---CCCCeEEEEeCCceEEEEeCCcc---------chhhhhcCCCCCceeccccCC
Confidence 555666777777754333 334 78999999999999999999997 666778889 88889999998
Q ss_pred CCCCeEEEee--CCceEEEEeC
Q 025649 230 TESENLVVCD--TSKVVKVYSI 249 (250)
Q Consensus 230 ~~~~~l~s~~--~d~~i~vw~~ 249 (250)
...++++++ .|+.+++|..
T Consensus 433 -~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 433 -TENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred -CcCeeeecCcCCCceEEEecC
Confidence 677888887 7999999975
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.5e-33 Score=202.30 Aligned_cols=214 Identities=14% Similarity=0.167 Sum_probs=177.4
Q ss_pred CcEEEEcccceeeeeeccCCC-CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHS-SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+|++|+.. ...++.++ +|. ..|.+++|+|+.. .|++||+||+|+|||....+....+. + |.-.
T Consensus 161 ~iKyWqpn-mnnVk~~~-ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~-G------------Hgwd 224 (464)
T KOG0284|consen 161 MIKYWQPN-MNNVKIIQ-AHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLR-G------------HGWD 224 (464)
T ss_pred eEEecccc-hhhhHHhh-HhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheec-c------------CCCC
Confidence 47888874 44455666 555 9999999999888 89999999999999998887766665 3 5678
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeee
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRL 155 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 155 (250)
|.+++|+| ...+|++++.|+.|++||.+++.++..+..+ +..|..+.|+|++++|++ ++.|. .+.+.+
T Consensus 225 VksvdWHP------~kgLiasgskDnlVKlWDprSg~cl~tlh~H-KntVl~~~f~~n~N~Llt-~skD~~~kv~DiR~m 296 (464)
T KOG0284|consen 225 VKSVDWHP------TKGLIASGSKDNLVKLWDPRSGSCLATLHGH-KNTVLAVKFNPNGNWLLT-GSKDQSCKVFDIRTM 296 (464)
T ss_pred cceeccCC------ccceeEEccCCceeEeecCCCcchhhhhhhc-cceEEEEEEcCCCCeeEE-ccCCceEEEEehhHh
Confidence 99999999 8899999999999999999999999887766 488999999999999995 22222 233355
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
+.++.+++|+..|++++|+|. +..+|.+|+.||.|..|.+.... ++...-.+|...|++++|+| -|.+|
T Consensus 297 kEl~~~r~Hkkdv~~~~WhP~--~~~lftsgg~Dgsvvh~~v~~~~--------p~~~i~~AHd~~iwsl~~hP-lGhil 365 (464)
T KOG0284|consen 297 KELFTYRGHKKDVTSLTWHPL--NESLFTSGGSDGSVVHWVVGLEE--------PLGEIPPAHDGEIWSLAYHP-LGHIL 365 (464)
T ss_pred HHHHHhhcchhhheeeccccc--cccceeeccCCCceEEEeccccc--------cccCCCcccccceeeeeccc-cceeE
Confidence 667889999999999999973 45789999999999999998432 33334468999999999998 78899
Q ss_pred EEeeCCceEEEEeC
Q 025649 236 VVCDTSKVVKVYSI 249 (250)
Q Consensus 236 ~s~~~d~~i~vw~~ 249 (250)
++|+.|.++++|.-
T Consensus 366 ~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 366 ATGSNDRTVRFWTR 379 (464)
T ss_pred eecCCCcceeeecc
Confidence 99999999999963
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.2e-32 Score=210.82 Aligned_cols=216 Identities=13% Similarity=0.152 Sum_probs=177.7
Q ss_pred eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC--------ccceec----------CCCCCCCCCCcc
Q 025649 13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--------NKIVNF----------GLPENNGNAGQC 74 (250)
Q Consensus 13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~--------~~~~~~----------~~~~~~~~~~~~ 74 (250)
..++. .-...++|..|+++++ +||.|-.|..|++|.+...+. +..... ...........+
T Consensus 371 ~YT~~-nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 371 MYTFH-NTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEE-EcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 34444 3445789999999999 999999999999999974221 111100 000011123467
Q ss_pred cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---eeeeecc
Q 025649 75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSG 151 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 151 (250)
.|.++|++..|+| +.++|+++++|+++|+|.+.+.........+ ..+++.+.|+|-|-++++. +....|.
T Consensus 449 GH~GPVyg~sFsP------d~rfLlScSED~svRLWsl~t~s~~V~y~GH-~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 449 GHSGPVYGCSFSP------DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH-LAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred cCCCceeeeeecc------cccceeeccCCcceeeeecccceeEEEecCC-CcceeeEEecCCceEEEecCCCceeeeee
Confidence 8999999999999 9999999999999999999999888887744 5899999999999999963 2233445
Q ss_pred CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649 152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 231 (250)
Q Consensus 152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 231 (250)
....++++.+.+|-+.|.|+.|+ |+..|+++||.|.++++||..++ ..++.+.+|.++|.+++|+| +
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FH---PNs~Y~aTGSsD~tVRlWDv~~G---------~~VRiF~GH~~~V~al~~Sp-~ 588 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFH---PNSNYVATGSSDRTVRLWDVSTG---------NSVRIFTGHKGPVTALAFSP-C 588 (707)
T ss_pred cccCCchhhhcccccccceEEEC---CcccccccCCCCceEEEEEcCCC---------cEEEEecCCCCceEEEEEcC-C
Confidence 55677888999999999999999 89999999999999999999999 66778899999999999998 9
Q ss_pred CCeEEEeeCCceEEEEeCC
Q 025649 232 SENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 232 ~~~l~s~~~d~~i~vw~~~ 250 (250)
|++|++|+.||.|++||+.
T Consensus 589 Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 589 GRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred CceEeecccCCcEEEEEcC
Confidence 9999999999999999974
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.7e-31 Score=207.96 Aligned_cols=214 Identities=21% Similarity=0.270 Sum_probs=178.4
Q ss_pred CcEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEc-cCCCCccceecCCCCCCCCCCcccCC
Q 025649 1 MWQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDF-SKGRPNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 1 ti~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
++++|+..+++ .+..+. +|...|.+++|+|+++ ++++++.|++|++||+ ..+..+++++ + |.
T Consensus 182 ~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~-g------------H~ 246 (456)
T KOG0266|consen 182 LIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRNLKTLK-G------------HS 246 (456)
T ss_pred cEEEeecccccchhhcccc-ccccceeeeEECCCCc-EEEEecCCceEEEeeccCCCeEEEEec-C------------CC
Confidence 47899998777 778887 9999999999999999 9999999999999999 4557788887 5 78
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCe
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGK 153 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 153 (250)
..|++++|+| +++++++|+.|++|++||+++++....+..+. ..+..++|++++.++++. ..|. ++..
T Consensus 247 ~~v~~~~f~p------~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs-~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 247 TYVTSVAFSP------DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS-DGISGLAFSPDGNLLVSA-SYDGTIRVWDLE 318 (456)
T ss_pred CceEEEEecC------CCCEEEEecCCCcEEEEeccCCeEEEeeeccC-CceEEEEECCCCCEEEEc-CCCccEEEEECC
Confidence 9999999999 88999999999999999999988888887775 699999999999999953 3233 2333
Q ss_pred eee--eeccccCcccc--EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee---EEE
Q 025649 154 RLH--LDYSVGGHTAA--ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN---WLC 226 (250)
Q Consensus 154 ~~~--~~~~~~~h~~~--v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~ 226 (250)
... ++..+.++... ++++.|+ |++.++++++.|+.+++||+..+ .......+|...+. ...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~fs---p~~~~ll~~~~d~~~~~w~l~~~---------~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 319 TGSKLCLKLLSGAENSAPVTSVQFS---PNGKYLLSASLDRTLKLWDLRSG---------KSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred CCceeeeecccCCCCCCceeEEEEC---CCCcEEEEecCCCeEEEEEccCC---------cceeeecccCCcceeEeccc
Confidence 333 45566666555 9999999 89999999999999999999998 55667777777532 223
Q ss_pred ecCCCCCeEEEeeCCceEEEEeCC
Q 025649 227 TTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 227 ~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.+ ..+.++++|+.|+.|++||+.
T Consensus 387 ~~-~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 387 LS-TGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred cc-CCCCeEEEEeCCceEEEEeCC
Confidence 34 388999999999999999974
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.4e-31 Score=180.03 Aligned_cols=207 Identities=18% Similarity=0.164 Sum_probs=171.6
Q ss_pred eeeeeccCCCCCeeeEEEcCC-CCeEEEEecCCCeEEEEEccCCC---CccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649 12 LYKSLRAGHSSICSSVQFIPW-KPWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD 87 (250)
Q Consensus 12 ~~~~l~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 87 (250)
.++.++ +|.+.+..++|+|- |. +|+||+.|..|++|+...+. +...+..+ |...|.+++|+|
T Consensus 6 ~~~~~~-gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~------------hkrsVRsvAwsp 71 (312)
T KOG0645|consen 6 LEQKLS-GHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDG------------HKRSVRSVAWSP 71 (312)
T ss_pred eEEeec-CCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEecccc------------chheeeeeeecC
Confidence 457788 99999999999998 77 89999999999999997533 33333323 889999999999
Q ss_pred CcccCCCCCEEEEEeCCCeEEEEeCCCce--eEeeccCCCCCCccceeecccceeEEEee------eeeeccCeeeeeec
Q 025649 88 ADMLDKTNKICVVAKGDGVVDVINIESEL--NISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGKRLHLDY 159 (250)
Q Consensus 88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 159 (250)
.|++|++++.|.++.||.-..+. +...++.+ ...+.+++|+++|.+|++.. .|........++..
T Consensus 72 ------~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~a 144 (312)
T KOG0645|consen 72 ------HGRYLASASFDATVVIWKKEDGEFECVATLEGH-ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIA 144 (312)
T ss_pred ------CCcEEEEeeccceEEEeecCCCceeEEeeeecc-ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEe
Confidence 99999999999999999877543 44444444 58999999999999999522 23333456788899
Q ss_pred cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649 160 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 239 (250)
Q Consensus 160 ~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 239 (250)
.++.|...|..+.|+ |...+|+++|.|.+|++|+-.....- .+...+.+|+..|++++|.+ .|..|++++
T Consensus 145 VL~~HtqDVK~V~WH---Pt~dlL~S~SYDnTIk~~~~~~dddW------~c~~tl~g~~~TVW~~~F~~-~G~rl~s~s 214 (312)
T KOG0645|consen 145 VLQEHTQDVKHVIWH---PTEDLLFSCSYDNTIKVYRDEDDDDW------ECVQTLDGHENTVWSLAFDN-IGSRLVSCS 214 (312)
T ss_pred eeccccccccEEEEc---CCcceeEEeccCCeEEEEeecCCCCe------eEEEEecCccceEEEEEecC-CCceEEEec
Confidence 999999999999999 78889999999999999987742211 56778899999999999997 788999999
Q ss_pred CCceEEEEeC
Q 025649 240 TSKVVKVYSI 249 (250)
Q Consensus 240 ~d~~i~vw~~ 249 (250)
.|++++||.+
T Consensus 215 dD~tv~Iw~~ 224 (312)
T KOG0645|consen 215 DDGTVSIWRL 224 (312)
T ss_pred CCcceEeeee
Confidence 9999999973
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-32 Score=193.01 Aligned_cols=212 Identities=20% Similarity=0.221 Sum_probs=181.1
Q ss_pred cEEEEccc-ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 2 WQIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 2 i~iwd~~~-~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+++||.++ .++++.+. +|...|.+++|-|.|. ++++++.|.+|+.|++.++-++.++.. |+..|
T Consensus 174 ~~LWd~~~~~~c~ks~~-gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~-------------h~ewv 238 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLI-GHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPG-------------HSEWV 238 (406)
T ss_pred hhheeHHHHHHHHHHhc-CcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccC-------------chHhE
Confidence 68999986 67778888 9999999999999998 899999999999999999999999983 57899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc---------------eeEEEee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN---------------IRDAEME 145 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 145 (250)
..++.+. ||.++++++.|.+|++|-+.++++...+..++ ..+.+++|-|.. +++. .+
T Consensus 239 r~v~v~~------DGti~As~s~dqtl~vW~~~t~~~k~~lR~hE-h~vEci~wap~~~~~~i~~at~~~~~~~~l~-s~ 310 (406)
T KOG0295|consen 239 RMVRVNQ------DGTIIASCSNDQTLRVWVVATKQCKAELREHE-HPVECIAWAPESSYPSISEATGSTNGGQVLG-SG 310 (406)
T ss_pred EEEEecC------CeeEEEecCCCceEEEEEeccchhhhhhhccc-cceEEEEecccccCcchhhccCCCCCccEEE-ee
Confidence 9999998 99999999999999999999987666555543 566666665431 2333 44
Q ss_pred eeee----ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc
Q 025649 146 ILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 221 (250)
Q Consensus 146 ~~~~----~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (250)
++|. ++.....++.++.+|.+.|..++|+ |.|+||+++..|+++++||++++ .++.....|+..
T Consensus 311 SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~---p~Gkyi~ScaDDktlrvwdl~~~---------~cmk~~~ah~hf 378 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS---PGGKYILSCADDKTLRVWDLKNL---------QCMKTLEAHEHF 378 (406)
T ss_pred cccceEEEEeccCCeEEEEEecccceeeeeEEc---CCCeEEEEEecCCcEEEEEeccc---------eeeeccCCCcce
Confidence 4443 3456778999999999999999999 89999999999999999999998 556677799999
Q ss_pred eeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 222 VNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 222 v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
|+++.|+. +..+++||+-|.++++|.-
T Consensus 379 vt~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 VTSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEEecCC-CCceEEeccccceeeeeec
Confidence 99999985 6669999999999999974
No 23
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-32 Score=212.26 Aligned_cols=217 Identities=18% Similarity=0.264 Sum_probs=189.0
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||..-+.++.+|. .|.++|..++|+|+.+ +++||++|..|++|+..+.+++.++. + |-+.|
T Consensus 32 ~IQlWDYRM~tli~rFd-eHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rrclftL~-G------------HlDYV 96 (1202)
T KOG0292|consen 32 VIQLWDYRMGTLIDRFD-EHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRRCLFTLL-G------------HLDYV 96 (1202)
T ss_pred eeeeehhhhhhHHhhhh-ccCCccceeeecCCCC-eEEecCCccEEEEEecccceehhhhc-c------------cccee
Confidence 48999999999999999 9999999999999999 99999999999999999999998887 4 68999
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCe-
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGK- 153 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~- 153 (250)
..+.|++ .--+|+++|.|.+|+||+..+.+++.....+ ...++|..|+|....+++ +..||+...+
T Consensus 97 Rt~~FHh------eyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 97 RTVFFHH------EYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred EEeeccC------CCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCCccceEEEecccceEEEEeecchhc
Confidence 9999998 8889999999999999999999998887776 478999999998888873 5566665311
Q ss_pred -------------------------eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccc
Q 025649 154 -------------------------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN 208 (250)
Q Consensus 154 -------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 208 (250)
..-..+.++||...|+-++|+ |.-.++++|+.|+.|++|.+...+.
T Consensus 170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh---pTlpliVSG~DDRqVKlWrmnetKa------ 240 (1202)
T KOG0292|consen 170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH---PTLPLIVSGADDRQVKLWRMNETKA------ 240 (1202)
T ss_pred cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec---CCcceEEecCCcceeeEEEeccccc------
Confidence 111235678999999999999 7778999999999999999987532
Q ss_pred cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 209 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
..+....+|.+.|.++.|+| ...++++.|.|++|+|||+.
T Consensus 241 -WEvDtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 241 -WEVDTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred -eeehhhhcccCCcceEEecC-ccceeEecCCCccEEEEecc
Confidence 45567889999999999998 67799999999999999984
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-31 Score=195.78 Aligned_cols=215 Identities=16% Similarity=0.173 Sum_probs=183.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
++||+. +|.++.+|. .|+++|.+|.|+.+|. +|++++.|+++.+||..++.....+.+. .....
T Consensus 259 ~riw~~-~G~l~~tl~-~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~-------------s~~~l 322 (524)
T KOG0273|consen 259 ARIWNK-DGNLISTLG-QHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFEFH-------------SAPAL 322 (524)
T ss_pred EEEEec-Cchhhhhhh-ccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeeeec-------------cCCcc
Confidence 689996 688888999 9999999999999999 9999999999999999999888777755 33335
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeeccCeeeeee
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLD 158 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 158 (250)
.+.|- +...+++++.|+.|+++.+....+...+.. +...|.++.|+|.|.+|++ .+...+|........
T Consensus 323 DVdW~-------~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 323 DVDWQ-------SNDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred ceEEe-------cCceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 56776 577899999999999999998888888877 5699999999999999995 233344455555667
Q ss_pred ccccCccccEEEEEeecCCC------CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649 159 YSVGGHTAAASCVAFSMFGE------RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 159 ~~~~~h~~~v~~~~~~p~~~------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
..+.+|...|+.+.|+|..| .+..+++++.|++|++||+..+ .++..+..|..+|++++|+| +|
T Consensus 395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---------v~i~~f~kH~~pVysvafS~-~g 464 (524)
T KOG0273|consen 395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---------VPIHTLMKHQEPVYSVAFSP-NG 464 (524)
T ss_pred hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---------ceeEeeccCCCceEEEEecC-CC
Confidence 78999999999999996332 2457999999999999999998 67788999999999999998 99
Q ss_pred CeEEEeeCCceEEEEeCC
Q 025649 233 ENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 233 ~~l~s~~~d~~i~vw~~~ 250 (250)
+++++|+.||.|.+|+.+
T Consensus 465 ~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 465 RYLASGSLDGCVHIWSTK 482 (524)
T ss_pred cEEEecCCCCeeEecccc
Confidence 999999999999999863
No 25
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.8e-32 Score=194.61 Aligned_cols=218 Identities=18% Similarity=0.213 Sum_probs=166.2
Q ss_pred CcEEEEccc---ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649 1 MWQIIDIRQ---HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 1 ti~iwd~~~---~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|..+|++.. -++.+++. +|..+|..+.||||.+ +|++|+.|..+++||+.+|.....+..+ +.
T Consensus 247 Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdr-yLlaCg~~e~~~lwDv~tgd~~~~y~~~------------~~ 312 (519)
T KOG0293|consen 247 TAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDR-YLLACGFDEVLSLWDVDTGDLRHLYPSG------------LG 312 (519)
T ss_pred eEEEEEEecCcceeeeeeee-cccCceEEEEECCCCC-eEEecCchHheeeccCCcchhhhhcccC------------cC
Confidence 345676542 35678888 9999999999999999 9999999999999999999998888744 34
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-----------
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI----------- 146 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 146 (250)
..+.+.+|.| |+..+++|+.|+++..||+.... ....+......+.+++.++||++++.++.
T Consensus 313 ~S~~sc~W~p------Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 313 FSVSSCAWCP------DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred CCcceeEEcc------CCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence 6788999999 99999999999999999998532 22233333355666666666666653211
Q ss_pred ---------------------------------eeeccCeeeeeeccccCccccEEEEEeecCC-CCCcEEEEeeCCCeE
Q 025649 147 ---------------------------------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFG-ERGKYLISGGNDKLV 192 (250)
Q Consensus 147 ---------------------------------~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~~~l~s~~~d~~i 192 (250)
...|+.+....++++.||+..-.-+. |+|. .+..++++||+|+.|
T Consensus 386 ~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr-SCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 386 RVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIR-SCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred hhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEE-eccCCCCcceEEecCCCceE
Confidence 01111122334456777776533332 1121 345799999999999
Q ss_pred EEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 193 KVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 193 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+||+..++ .++..+.+|...|++++|+|.+...||+||.||+|+||..
T Consensus 465 yIWhr~sg---------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 465 YIWHRISG---------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred EEEEccCC---------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 99999998 8888999999999999999999999999999999999965
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-32 Score=203.80 Aligned_cols=216 Identities=18% Similarity=0.275 Sum_probs=186.0
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|.|||.++..+++.+. -..-+|.+..|-+..+ -+++|++|..|++|+..+++.+..|.. |++.|
T Consensus 36 ~V~IWnyetqtmVksfe-V~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~ekV~~FeA-------------H~DyI 100 (794)
T KOG0276|consen 36 DVQIWNYETQTMVKSFE-VSEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGEKVKTFEA-------------HSDYI 100 (794)
T ss_pred eeEEEecccceeeeeee-ecccchhhheeeeccc-eEEEecCCceEEEEecccceeeEEeec-------------cccce
Confidence 47899999999999999 8889999999999888 699999999999999999999999984 58999
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeeccc-ceeEEEeeeeeec----cCeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV-NIRDAEMEILDQS----GGKRL 155 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~ 155 (250)
.+++.+| ..-++++++.|-+|++||.+.+-........+...+++++|+|. .+.++ +++.|.+ .....
T Consensus 101 R~iavHP------t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa-S~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 101 RSIAVHP------TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA-SASLDRTVKVWSLGSP 173 (794)
T ss_pred eeeeecC------CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee-eeeccccEEEEEcCCC
Confidence 9999999 88999999999999999999876665555556689999999995 45555 5555544 34555
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
.+..++++|...|+|+.|-|- .+..+|+||+.|.+|+|||.++. .++..+.+|...|..+.|+| .-.+|
T Consensus 174 ~~nfTl~gHekGVN~Vdyy~~-gdkpylIsgaDD~tiKvWDyQtk---------~CV~TLeGHt~Nvs~v~fhp-~lpii 242 (794)
T KOG0276|consen 174 HPNFTLEGHEKGVNCVDYYTG-GDKPYLISGADDLTIKVWDYQTK---------SCVQTLEGHTNNVSFVFFHP-ELPII 242 (794)
T ss_pred CCceeeeccccCcceEEeccC-CCcceEEecCCCceEEEeecchH---------HHHHHhhcccccceEEEecC-CCcEE
Confidence 667899999999999999831 23469999999999999999998 56677899999999999998 55689
Q ss_pred EEeeCCceEEEEeC
Q 025649 236 VVCDTSKVVKVYSI 249 (250)
Q Consensus 236 ~s~~~d~~i~vw~~ 249 (250)
++||.||+++||+-
T Consensus 243 isgsEDGTvriWhs 256 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNS 256 (794)
T ss_pred EEecCCccEEEecC
Confidence 99999999999973
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-31 Score=205.65 Aligned_cols=222 Identities=18% Similarity=0.186 Sum_probs=184.5
Q ss_pred CcEEEEcccce----eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccc-eecCCCCCCCCCCccc
Q 025649 1 MWQIIDIRQHC----LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI-VNFGLPENNGNAGQCY 75 (250)
Q Consensus 1 ti~iwd~~~~~----~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~ 75 (250)
++++|.++.+. ++.... +|++.|.+++++..+..+|+++|.|+++++|++...+.... +.+ ........
T Consensus 388 svilWr~~~~~~~~~~~a~~~-gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~-----~~~~t~~a 461 (775)
T KOG0319|consen 388 SVILWRLNNNCSKSLCVAQAN-GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL-----TCRYTERA 461 (775)
T ss_pred eEEEEEecCCcchhhhhhhhc-ccccccceeeecccCccEEEEecCCceEEEecCCCccccccccee-----hhhHHHHh
Confidence 57899774332 445566 99999999999988877999999999999999976322111 000 01123445
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeeccC
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGG 152 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 152 (250)
|...|++++++| +.+++++|++|++.++|+++.......+..+ ...+.++.|+|..+.+++ .....+|..
T Consensus 462 HdKdIN~Vaia~------ndkLiAT~SqDktaKiW~le~~~l~~vLsGH-~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 462 HDKDINCVAIAP------NDKLIATGSQDKTAKIWDLEQLRLLGVLSGH-TRGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred hcccccceEecC------CCceEEecccccceeeecccCceEEEEeeCC-ccceEEEEeccccceeEeccCCceEEEEEe
Confidence 889999999999 9999999999999999999977777766665 589999999999999995 233445556
Q ss_pred eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649 153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
..+.++++|.||...|..+.|- .+|..|++++.||.|++|++++. ++...+..|+..|++++.++ ..
T Consensus 535 s~fSClkT~eGH~~aVlra~F~---~~~~qliS~~adGliKlWnikt~---------eC~~tlD~H~DrvWaL~~~~-~~ 601 (775)
T KOG0319|consen 535 STFSCLKTFEGHTSAVLRASFI---RNGKQLISAGADGLIKLWNIKTN---------ECEMTLDAHNDRVWALSVSP-LL 601 (775)
T ss_pred ccceeeeeecCccceeEeeeee---eCCcEEEeccCCCcEEEEeccch---------hhhhhhhhccceeEEEeecC-cc
Confidence 7788999999999999999999 89999999999999999999998 77778899999999999997 66
Q ss_pred CeEEEeeCCceEEEEe
Q 025649 233 ENLVVCDTSKVVKVYS 248 (250)
Q Consensus 233 ~~l~s~~~d~~i~vw~ 248 (250)
..++||+.||.|.+|.
T Consensus 602 ~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 602 DMFVTGGGDGRIIFWK 617 (775)
T ss_pred ceeEecCCCeEEEEee
Confidence 7899999999999994
No 28
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=194.34 Aligned_cols=211 Identities=21% Similarity=0.299 Sum_probs=182.3
Q ss_pred eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
+.++.+..+.+.|..|+|||+ +|++|+.||.|.+||..+|+..+.++... ...+..+.+.|.|+.|+.
T Consensus 206 r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQA-----qd~fMMmd~aVlci~FSR------ 273 (508)
T KOG0275|consen 206 RSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQA-----QDNFMMMDDAVLCISFSR------ 273 (508)
T ss_pred hheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhh-----hcceeecccceEEEeecc------
Confidence 445556778899999999999 99999999999999999999877776552 234455778999999998
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc----CeeeeeeccccCccccEE
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAAS 169 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~ 169 (250)
|...+++|+.||.|++|.+++|.++.++...+...+.++.|+.|+..++ .+++|... .+..++++.++||...|+
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCcccccc
Confidence 9999999999999999999999999999988889999999999999998 55555543 467788999999999999
Q ss_pred EEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee--ccCCceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649 170 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESENLVVCDTSKVVKVY 247 (250)
Q Consensus 170 ~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw 247 (250)
...|. ++|.++++++.||+|++|+.++..+. ..+. +...+|+++...|.+...+++|...++|.+-
T Consensus 353 ~a~ft---~dG~~iisaSsDgtvkvW~~KtteC~---------~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 353 EATFT---DDGHHIISASSDGTVKVWHGKTTECL---------STFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred ceEEc---CCCCeEEEecCCccEEEecCcchhhh---------hhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence 99999 89999999999999999999998554 3333 3445799999999999999999999999988
Q ss_pred eC
Q 025649 248 SI 249 (250)
Q Consensus 248 ~~ 249 (250)
++
T Consensus 421 n~ 422 (508)
T KOG0275|consen 421 NM 422 (508)
T ss_pred ec
Confidence 76
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.8e-30 Score=176.83 Aligned_cols=226 Identities=17% Similarity=0.155 Sum_probs=176.3
Q ss_pred CcEEEEccc---ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC--CCccceecCCCCCCCCCCccc
Q 025649 1 MWQIIDIRQ---HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 1 ti~iwd~~~---~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~ 75 (250)
+||+|++.. -.+...+..+|+..|.+++|+|.|+ +|++||.|.++.||.-..+ +++..+. +
T Consensus 38 ~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~efecv~~lE-G------------ 103 (312)
T KOG0645|consen 38 AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEFECVATLE-G------------ 103 (312)
T ss_pred eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEEEeecCCCceeEEeeee-c------------
Confidence 489999874 4555567668999999999999999 9999999999999987654 4555665 3
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce--eEeeccCCCCCCccceeecccceeEEEeeeeeecc--
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL--NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG-- 151 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 151 (250)
|...|.+++|++ +|++||+++.|+.|-+|....+. ........+...+..+.|+|...+|+ .+++|.++
T Consensus 104 HEnEVK~Vaws~------sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~-S~SYDnTIk~ 176 (312)
T KOG0645|consen 104 HENEVKCVAWSA------SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF-SCSYDNTIKV 176 (312)
T ss_pred cccceeEEEEcC------CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE-EeccCCeEEE
Confidence 688999999999 99999999999999999998533 23334445568899999999999998 44444332
Q ss_pred -----CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce-e---------------------
Q 025649 152 -----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV-Q--------------------- 204 (250)
Q Consensus 152 -----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~--------------------- 204 (250)
...-.+..++.+|.+.|.+++|+ +.|..|++++.|++++||-+.+.-.. +
T Consensus 177 ~~~~~dddW~c~~tl~g~~~TVW~~~F~---~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~ 253 (312)
T KOG0645|consen 177 YRDEDDDDWECVQTLDGHENTVWSLAFD---NIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDD 253 (312)
T ss_pred EeecCCCCeeEEEEecCccceEEEEEec---CCCceEEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCC
Confidence 34456788999999999999999 89999999999999999984322110 0
Q ss_pred ------cccc---c--c-eeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 205 ------TSIN---N--D-LLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 205 ------~~~~---~--~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.... + + +......|+..|+++.|.|.....|++|+.||.|++|.+.
T Consensus 254 ~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 254 AIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 0000 0 1 1123346888999999999556789999999999999863
No 30
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6.3e-32 Score=183.89 Aligned_cols=211 Identities=14% Similarity=0.146 Sum_probs=178.6
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
|-+|||.-+|..+..|. |..-|.+++|+.|.. +|++|+.+..+|+||++..+. ...+. + |+..
T Consensus 82 takvw~a~tgdelhsf~--hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~App~E~~-g------------htg~ 145 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFE--HKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPPKEIS-G------------HTGG 145 (334)
T ss_pred hhhhhhhhhhhhhhhhh--hhheeeeEEecccch-hhhccchHHHhhhhhccCCCCCchhhc-C------------CCCc
Confidence 45799999999999997 999999999999999 899999999999999987543 33333 3 7889
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE--eeeeeeccCeeeee
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE--MEILDQSGGKRLHL 157 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 157 (250)
|..+.|.- ..+.+++++.|++||+||.+++.....+... ..+.++.++++|+++.. .++...++...+..
T Consensus 146 Ir~v~wc~------eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~--s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~ 217 (334)
T KOG0278|consen 146 IRTVLWCH------EDKCILSSADDKTVRLWDHRTGTEVQSLEFN--SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL 217 (334)
T ss_pred ceeEEEec------cCceEEeeccCCceEEEEeccCcEEEEEecC--CCCcceeeccCCCEEEEecCceeEEeccccccc
Confidence 99999986 7788888899999999999999999888876 78999999999999874 33445556666666
Q ss_pred eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee-eeccCCceeEEEecCCCCCeEE
Q 025649 158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
++.++. ...|.+...+ |+...+++|++|..++.||..++. .+.. ..+|.++|.++.|+| ||...+
T Consensus 218 lKs~k~-P~nV~SASL~---P~k~~fVaGged~~~~kfDy~Tge---------Ei~~~nkgh~gpVhcVrFSP-dGE~yA 283 (334)
T KOG0278|consen 218 LKSYKM-PCNVESASLH---PKKEFFVAGGEDFKVYKFDYNTGE---------EIGSYNKGHFGPVHCVRFSP-DGELYA 283 (334)
T ss_pred eeeccC-cccccccccc---CCCceEEecCcceEEEEEeccCCc---------eeeecccCCCCceEEEEECC-CCceee
Confidence 666654 3468888999 788999999999999999999984 3344 489999999999998 999999
Q ss_pred EeeCCceEEEEeC
Q 025649 237 VCDTSKVVKVYSI 249 (250)
Q Consensus 237 s~~~d~~i~vw~~ 249 (250)
+||.||+|+||.+
T Consensus 284 sGSEDGTirlWQt 296 (334)
T KOG0278|consen 284 SGSEDGTIRLWQT 296 (334)
T ss_pred ccCCCceEEEEEe
Confidence 9999999999985
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=8e-31 Score=186.83 Aligned_cols=210 Identities=17% Similarity=0.226 Sum_probs=181.8
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
||+|||+.+|++..++. ||...|..+++|+..+ ||++++.|+.|+.||++..+.++.+. + |-..|
T Consensus 174 tikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~nkvIR~Yh-G------------HlS~V 238 (460)
T KOG0285|consen 174 TIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEYNKVIRHYH-G------------HLSGV 238 (460)
T ss_pred eeEEEEcccCeEEEeec-chhheeeeeeecccCc-eEEEecCCCeeEEEechhhhhHHHhc-c------------cccee
Confidence 68999999999999999 9999999999999999 99999999999999999999998887 4 67899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKR 154 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 154 (250)
++++.+| .-..|++|+.|.++++||+++...+..+..+ ...+.++.+.|....+++ +..||....+
T Consensus 239 ~~L~lhP------Tldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk- 310 (460)
T KOG0285|consen 239 YCLDLHP------TLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK- 310 (460)
T ss_pred EEEeccc------cceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeecCCCceEEecCCceEEEeeeccCc-
Confidence 9999999 8899999999999999999998887777665 477888888876655553 4455555544
Q ss_pred eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649 155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 234 (250)
....+..|+..|.+++.+ |....+++++.| .|+-|++..+ ..+..+.+|..-|++++... |+ +
T Consensus 311 --t~~tlt~hkksvral~lh---P~e~~fASas~d-nik~w~~p~g---------~f~~nlsgh~~iintl~~ns-D~-v 373 (460)
T KOG0285|consen 311 --TMITLTHHKKSVRALCLH---PKENLFASASPD-NIKQWKLPEG---------EFLQNLSGHNAIINTLSVNS-DG-V 373 (460)
T ss_pred --eeEeeecccceeeEEecC---CchhhhhccCCc-cceeccCCcc---------chhhccccccceeeeeeecc-Cc-e
Confidence 445777899999999999 788889998876 7999999998 67777889999999999985 54 8
Q ss_pred EEEeeCCceEEEEeCC
Q 025649 235 LVVCDTSKVVKVYSIS 250 (250)
Q Consensus 235 l~s~~~d~~i~vw~~~ 250 (250)
+++|+.+|.+.+||.+
T Consensus 374 ~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWK 389 (460)
T ss_pred EEEcCCceEEEEEecC
Confidence 9999999999999963
No 32
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=4.5e-31 Score=188.09 Aligned_cols=205 Identities=18% Similarity=0.233 Sum_probs=174.2
Q ss_pred ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649 10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 89 (250)
Q Consensus 10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (250)
.++.+.++ +|.+.|.|+++.|.++ .|++|+.|++++|||+.+|+...++. + |...|..+++++
T Consensus 141 wKl~rVi~-gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkltlt-G------------hi~~vr~vavS~-- 203 (460)
T KOG0285|consen 141 WKLYRVIS-GHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLTLT-G------------HIETVRGVAVSK-- 203 (460)
T ss_pred ceehhhhh-hccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEeec-c------------hhheeeeeeecc--
Confidence 45667788 9999999999999988 79999999999999999999888876 4 578899999998
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeeeccccCccc
Q 025649 90 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGHTA 166 (250)
Q Consensus 90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~ 166 (250)
...++++++.|+.|+.||++..+.+.....+ -..+.+++.+|.-..+++.+ ....|+.+....+..+.||..
T Consensus 204 ----rHpYlFs~gedk~VKCwDLe~nkvIR~YhGH-lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~ 278 (460)
T KOG0285|consen 204 ----RHPYLFSAGEDKQVKCWDLEYNKVIRHYHGH-LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN 278 (460)
T ss_pred ----cCceEEEecCCCeeEEEechhhhhHHHhccc-cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC
Confidence 8899999999999999999988777666555 37899999999999888522 233344444556778999999
Q ss_pred cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEE
Q 025649 167 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 246 (250)
Q Consensus 167 ~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~v 246 (250)
+|.++.+. |-...+++||.|++|++||++.+ +.......|...|.+++.+| ....|++++.|. |+-
T Consensus 279 ~V~~V~~~---~~dpqvit~S~D~tvrlWDl~ag---------kt~~tlt~hkksvral~lhP-~e~~fASas~dn-ik~ 344 (460)
T KOG0285|consen 279 PVASVMCQ---PTDPQVITGSHDSTVRLWDLRAG---------KTMITLTHHKKSVRALCLHP-KENLFASASPDN-IKQ 344 (460)
T ss_pred cceeEEee---cCCCceEEecCCceEEEeeeccC---------ceeEeeecccceeeEEecCC-chhhhhccCCcc-cee
Confidence 99999999 55668999999999999999998 56677889999999999998 666789998775 888
Q ss_pred EeCC
Q 025649 247 YSIS 250 (250)
Q Consensus 247 w~~~ 250 (250)
|+++
T Consensus 345 w~~p 348 (460)
T KOG0285|consen 345 WKLP 348 (460)
T ss_pred ccCC
Confidence 8764
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=1e-29 Score=212.41 Aligned_cols=223 Identities=15% Similarity=0.163 Sum_probs=171.1
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+|+|||+.+++.+..+. +|.+.|++++|+| ++. +|++|+.||+|++||++++..+..+. +...
T Consensus 556 ~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~~~~~~~~--------------~~~~ 619 (793)
T PLN00181 556 VVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPT-LLASGSDDGSVKLWSINQGVSIGTIK--------------TKAN 619 (793)
T ss_pred eEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCC-EEEEEcCCCEEEEEECCCCcEEEEEe--------------cCCC
Confidence 58999999999999999 9999999999997 566 89999999999999999888877775 2356
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccC-
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGG- 152 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~- 152 (250)
+.++.|++ +++.+|++|+.||.|++||+++..........+...+.++.|. ++..+++ +..|+....
T Consensus 620 v~~v~~~~-----~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 620 ICCVQFPS-----ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred eEEEEEeC-----CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCc
Confidence 88899865 4799999999999999999987653322223445788899997 5666663 223433221
Q ss_pred --eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec--cccccee--eeeeccCCceeEEE
Q 025649 153 --KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT--SINNDLL--IKNINLNKKVNWLC 226 (250)
Q Consensus 153 --~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~--~~~~~~~~~v~~~~ 226 (250)
....++..+.+|...+.++.|+ +++.+|++|+.|+.|++|+......... ....... .....|...|.+++
T Consensus 694 ~~~~~~~l~~~~gh~~~i~~v~~s---~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 694 SGINETPLHSFMGHTNVKNFVGLS---VSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred cccCCcceEEEcCCCCCeeEEEEc---CCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 1234567888999999999999 8899999999999999999876532210 0000000 01234566799999
Q ss_pred ecCCCCCeEEEeeCCceEEEEeC
Q 025649 227 TTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 227 ~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
|+| ++..|++|+.||.|+||++
T Consensus 771 ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcC-CCCeEEEecCCCcEEEEec
Confidence 997 8889999999999999996
No 34
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=2.2e-30 Score=180.33 Aligned_cols=213 Identities=19% Similarity=0.200 Sum_probs=180.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
||+.||.++|+.+++++ +|.+-|+.+.-+.-|..++.|++.||++++||+++...++++. .+-++
T Consensus 113 ~v~~wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--------------~kyql 177 (338)
T KOG0265|consen 113 TVRGWDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--------------NKYQL 177 (338)
T ss_pred eEEEEecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--------------cceeE
Confidence 58999999999999999 9999999999777787788999999999999999999988886 34679
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKR 154 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 154 (250)
+++.|.. .+..+.+|+-|+.|++||++.+........+. ..|..+..+|+|.++.+ ...||..-...
T Consensus 178 tAv~f~d------~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~-DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 178 TAVGFKD------TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHA-DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred EEEEecc------cccceeeccccCceeeeccccCcceEEeeccc-CceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 9999997 89999999999999999999988887777664 78999999999999984 44455554322
Q ss_pred -eeeeccccCccc----cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649 155 -LHLDYSVGGHTA----AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 229 (250)
Q Consensus 155 -~~~~~~~~~h~~----~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 229 (250)
.+++..+.+|.- ....++|+ |+++.+.+|+.|+.+++||.... .++..+.+|.+.|+.+.|+|
T Consensus 251 ~~R~v~if~g~~hnfeknlL~csws---p~~~~i~ags~dr~vyvwd~~~r---------~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWS---PNGTKITAGSADRFVYVWDTTSR---------RILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred CCceEEEeecchhhhhhhcceeecc---CCCCccccccccceEEEeecccc---------cEEEEcCCcceeEEEeeecC
Confidence 233666666532 23456777 89999999999999999999997 67778899999999999998
Q ss_pred CCCCeEEEeeCCceEEEEe
Q 025649 230 TESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 230 ~~~~~l~s~~~d~~i~vw~ 248 (250)
...+|.+++.|.+|++=.
T Consensus 319 -~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 319 -TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred -CCcEEEEeccCceeEeec
Confidence 677999999999998743
No 35
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.8e-31 Score=179.41 Aligned_cols=216 Identities=16% Similarity=0.186 Sum_probs=179.3
Q ss_pred CcEEEEcc-cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIR-QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~-~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+++|||+. ...++..++ .|...|.++.|++..+..++++|-|++|++|+...++.+.++. + |..-
T Consensus 84 SLrl~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-g------------h~~~ 149 (311)
T KOG0277|consen 84 SLRLFDLTMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-G------------HNSC 149 (311)
T ss_pred eEEEeccCCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-C------------CccE
Confidence 57999965 446888999 9999999999999876688899999999999999999999987 4 6889
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe-------eeeeeccC
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM-------EILDQSGG 152 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 152 (250)
|+...|+| ...+.+++++.|+++++||++..-....+..+ ...+.++.|+.-...++.. ..||.+..
T Consensus 150 Iy~a~~sp-----~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah-~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 150 IYQAAFSP-----HIPNLFASASGDGTLRLWDVRSPGKFMSIEAH-NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred EEEEecCC-----CCCCeEEEccCCceEEEEEecCCCceeEEEec-cceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence 99999999 68899999999999999999874323334444 3789999999876666543 34554443
Q ss_pred eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649 153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
+ .++..+.+|.-.|..++||| .....|++++.|-+++|||..... ..+.....|++.+..+.|++-++
T Consensus 224 r--~pl~eL~gh~~AVRkvk~Sp--h~~~lLaSasYDmT~riw~~~~~d--------s~~e~~~~HtEFv~g~Dws~~~~ 291 (311)
T KOG0277|consen 224 R--TPLFELNGHGLAVRKVKFSP--HHASLLASASYDMTVRIWDPERQD--------SAIETVDHHTEFVCGLDWSLFDP 291 (311)
T ss_pred c--ccceeecCCceEEEEEecCc--chhhHhhhccccceEEecccccch--------hhhhhhhccceEEeccccccccC
Confidence 3 45788899999999999997 456799999999999999998653 34456678999999999999888
Q ss_pred CeEEEeeCCceEEEEe
Q 025649 233 ENLVVCDTSKVVKVYS 248 (250)
Q Consensus 233 ~~l~s~~~d~~i~vw~ 248 (250)
.++|+++.|..++||+
T Consensus 292 ~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 292 GQVASTGWDELLYVWN 307 (311)
T ss_pred ceeeecccccceeeec
Confidence 8999999999999998
No 36
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=6.3e-29 Score=195.51 Aligned_cols=220 Identities=15% Similarity=0.127 Sum_probs=157.6
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCC-CCeEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCCCcccCCCc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPW-KPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
|++|+......+..+. +|.+.|.+++|+|+ +. +|++|+.||+|++||+.++.. ...+. .....+..|...
T Consensus 56 I~L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~-lLASgS~DgtIrIWDi~t~~~~~~~i~------~p~~~L~gH~~~ 127 (568)
T PTZ00420 56 IRLENQMRKPPVIKLK-GHTSSILDLQFNPCFSE-ILASGSEDLTIRVWEIPHNDESVKEIK------DPQCILKGHKKK 127 (568)
T ss_pred EEeeecCCCceEEEEc-CCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCCccccccc------cceEEeecCCCc
Confidence 6788877777778899 99999999999997 55 899999999999999986432 11110 000112236788
Q ss_pred eeEEecCCCcccCCCCCE-EEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeee
Q 025649 80 VHAIAIPDADMLDKTNKI-CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRL 155 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 155 (250)
|.+++|+| ++.. |++++.|++|++||+++++....+.. ...+.+++|+|+|.++++.+ ....++....
T Consensus 128 V~sVaf~P------~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 128 ISIIDWNP------MNYYIMCSSGFDSFVNIWDIENEKRAFQINM--PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred EEEEEECC------CCCeEEEEEeCCCeEEEEECCCCcEEEEEec--CCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence 99999999 6664 57899999999999999876655543 36799999999999998532 2333444445
Q ss_pred eeeccccCccccEEEE-----EeecCCCCCcEEEEeeCCC----eEEEEecCCCcceecccccceeeeee--ccCCceeE
Q 025649 156 HLDYSVGGHTAAASCV-----AFSMFGERGKYLISGGNDK----LVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNW 224 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~-----~~~p~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~ 224 (250)
+.+..+.+|.+.+.+. .|+ +++.++++++.|+ .|+|||++... .++.... .+.+.+.
T Consensus 200 ~~i~tl~gH~g~~~s~~v~~~~fs---~d~~~IlTtG~d~~~~R~VkLWDlr~~~--------~pl~~~~ld~~~~~L~- 267 (568)
T PTZ00420 200 EIASSFHIHDGGKNTKNIWIDGLG---GDDNYILSTGFSKNNMREMKLWDLKNTT--------SALVTMSIDNASAPLI- 267 (568)
T ss_pred cEEEEEecccCCceeEEEEeeeEc---CCCCEEEEEEcCCCCccEEEEEECCCCC--------CceEEEEecCCccceE-
Confidence 5667788898765433 345 6788888877664 79999999642 2332222 2222222
Q ss_pred EEecCCCCCeEEEeeCCceEEEEeC
Q 025649 225 LCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 225 ~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
-.+.+.++.++++|+.|+.|++|++
T Consensus 268 p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 268 PHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EeeeCCCCCEEEEEECCCeEEEEEc
Confidence 2355557889999999999999997
No 37
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-29 Score=174.08 Aligned_cols=201 Identities=13% Similarity=0.156 Sum_probs=176.5
Q ss_pred eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649 15 SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 94 (250)
Q Consensus 15 ~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (250)
.++ ||+.+++.+.++.+|. +|.+|+.|.+..+|-..+|+.+.++. + |...|+++++.. +
T Consensus 5 ~l~-GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGty~-G------------HtGavW~~Did~------~ 63 (327)
T KOG0643|consen 5 LLQ-GHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGTYD-G------------HTGAVWCCDIDW------D 63 (327)
T ss_pred ccc-cCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeeeec-C------------CCceEEEEEecC------C
Confidence 356 9999999999999999 99999999999999998999999987 4 689999999997 8
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE-----------eeeeeeccC----eeeeeec
Q 025649 95 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE-----------MEILDQSGG----KRLHLDY 159 (250)
Q Consensus 95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~----~~~~~~~ 159 (250)
.+++++|+.|.++++||+++|+.+...+.+ ..+..+.|+++|.+++. +...+.... ...++..
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~k~~--~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATWKTN--SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEeecC--CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 999999999999999999999999988877 78999999999988873 334444422 2445567
Q ss_pred cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649 160 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 239 (250)
Q Consensus 160 ~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 239 (250)
.+..+...++.+-|. |.+++|++|.+||.|.+||++++. +.+.....|+..|+.|.+++ |..+++++|
T Consensus 142 kI~t~~skit~a~Wg---~l~~~ii~Ghe~G~is~~da~~g~--------~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s 209 (327)
T KOG0643|consen 142 KIPTPDSKITSALWG---PLGETIIAGHEDGSISIYDARTGK--------ELVDSDEEHSSKINDLQFSR-DRTYFITGS 209 (327)
T ss_pred EecCCccceeeeeec---ccCCEEEEecCCCcEEEEEcccCc--------eeeechhhhccccccccccC-CcceEEecc
Confidence 777888999999999 899999999999999999999974 45556678999999999997 889999999
Q ss_pred CCceEEEEeCC
Q 025649 240 TSKVVKVYSIS 250 (250)
Q Consensus 240 ~d~~i~vw~~~ 250 (250)
.|.+-++||++
T Consensus 210 ~Dttakl~D~~ 220 (327)
T KOG0643|consen 210 KDTTAKLVDVR 220 (327)
T ss_pred cCccceeeecc
Confidence 99999999974
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6.1e-30 Score=197.06 Aligned_cols=219 Identities=16% Similarity=0.200 Sum_probs=178.0
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
+|++++.+..+. .+. ||++.|.++....+|. +|+|||.|.++++|.++++......- .....|...|.
T Consensus 348 lr~y~~~~~~c~-ii~-GH~e~vlSL~~~~~g~-llat~sKD~svilWr~~~~~~~~~~~---------a~~~gH~~svg 415 (775)
T KOG0319|consen 348 LRLYTLPTSYCQ-IIP-GHTEAVLSLDVWSSGD-LLATGSKDKSVILWRLNNNCSKSLCV---------AQANGHTNSVG 415 (775)
T ss_pred eEEEecCCCceE-EEe-CchhheeeeeecccCc-EEEEecCCceEEEEEecCCcchhhhh---------hhhcccccccc
Confidence 688888877765 777 9999999999777776 99999999999999996554322111 01123788899
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE---e-----eccCCCCCCccceeecccceeEEEe---eeeeec
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI---S-----RSKSTTKPLKGSQSTSKVNIRDAEM---EILDQS 150 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 150 (250)
+++++. ..-..+++++.|+++++|++...+.. . .....++..|.+++++|+.+++++. .....+
T Consensus 416 ava~~~-----~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW 490 (775)
T KOG0319|consen 416 AVAGSK-----LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIW 490 (775)
T ss_pred eeeecc-----cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeee
Confidence 999975 35578999999999999999862211 1 1233466899999999999999952 233445
Q ss_pred cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCC
Q 025649 151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT 230 (250)
Q Consensus 151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 230 (250)
..+.......+.||+..|.|+.|+ ++.+.++|+|.|++|+||.+.+. .++.++.+|...|..+.|..
T Consensus 491 ~le~~~l~~vLsGH~RGvw~V~Fs---~~dq~laT~SgD~TvKIW~is~f---------SClkT~eGH~~aVlra~F~~- 557 (775)
T KOG0319|consen 491 DLEQLRLLGVLSGHTRGVWCVSFS---KNDQLLATCSGDKTVKIWSISTF---------SCLKTFEGHTSAVLRASFIR- 557 (775)
T ss_pred cccCceEEEEeeCCccceEEEEec---cccceeEeccCCceEEEEEeccc---------eeeeeecCccceeEeeeeee-
Confidence 556778889999999999999999 88899999999999999999998 78889999999999999996
Q ss_pred CCCeEEEeeCCceEEEEeCC
Q 025649 231 ESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 231 ~~~~l~s~~~d~~i~vw~~~ 250 (250)
++..|++++.||.|++|++.
T Consensus 558 ~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 558 NGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred CCcEEEeccCCCcEEEEecc
Confidence 78889999999999999974
No 39
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.4e-29 Score=176.40 Aligned_cols=214 Identities=18% Similarity=0.206 Sum_probs=172.3
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCC-eEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP-WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
||+|||+.+.+.+..+- .|.+.|+++.|.+... ..|++|+.||.|.+|+....+++..++. |...
T Consensus 64 tI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~-------------H~~~ 129 (362)
T KOG0294|consen 64 TIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKA-------------HKGQ 129 (362)
T ss_pred cEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecc-------------cccc
Confidence 79999999999999998 9999999999998752 2599999999999999999988888884 4677
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee--eeeccCeeeee
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI--LDQSGGKRLHL 157 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 157 (250)
|+.++++| .+++.++.+.|+.++.||+-.|+.-...... .....+.|+|.|.+++..+. .+.........
T Consensus 130 Vt~lsiHP------S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v 201 (362)
T KOG0294|consen 130 VTDLSIHP------SGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASV 201 (362)
T ss_pred cceeEecC------CCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEcCCCCEEEEEeccEEEEEecccHhH
Confidence 99999999 9999999999999999999998876655554 34445999999998873221 22222222222
Q ss_pred eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec-CCCCCeEE
Q 025649 158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT-PTESENLV 236 (250)
Q Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~ 236 (250)
...+.. ...+.|+.|. ++..|++|..|+.|++||..+. .++..+.+|..+|.++.+. .+++.+|+
T Consensus 202 ~~~i~~-~~r~l~~~~l----~~~~L~vG~d~~~i~~~D~ds~---------~~~~~~~AH~~RVK~i~~~~~~~~~~lv 267 (362)
T KOG0294|consen 202 FREIEN-PKRILCATFL----DGSELLVGGDNEWISLKDTDSD---------TPLTEFLAHENRVKDIASYTNPEHEYLV 267 (362)
T ss_pred hhhhhc-cccceeeeec----CCceEEEecCCceEEEeccCCC---------ccceeeecchhheeeeEEEecCCceEEE
Confidence 222222 2457888886 6789999999999999999986 6677889999999999844 34778999
Q ss_pred EeeCCceEEEEeCC
Q 025649 237 VCDTSKVVKVYSIS 250 (250)
Q Consensus 237 s~~~d~~i~vw~~~ 250 (250)
|+|.||.|+|||++
T Consensus 268 TaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 268 TASSDGFIKVWDID 281 (362)
T ss_pred EeccCceEEEEEcc
Confidence 99999999999974
No 40
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1e-28 Score=183.89 Aligned_cols=230 Identities=17% Similarity=0.142 Sum_probs=168.1
Q ss_pred CcEEEEcccceeeeeec--cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCC------------
Q 025649 1 MWQIIDIRQHCLYKSLR--AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE------------ 66 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~------------ 66 (250)
+|.+||=.+++.+..|. .+|.+.|.+|+|+||++ .|+|+|.|.+++|||+.+.+++.++..+...
T Consensus 213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd 291 (603)
T KOG0318|consen 213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD 291 (603)
T ss_pred cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC
Confidence 47899999999998886 37999999999999999 8999999999999999988887776644320
Q ss_pred ------------------CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCC---
Q 025649 67 ------------------NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT--- 125 (250)
Q Consensus 67 ------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--- 125 (250)
.........|...|+++..+| ++++|++|+.||.|.-||..++..-......+
T Consensus 292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~------d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nq 365 (603)
T KOG0318|consen 292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP------DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQ 365 (603)
T ss_pred eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC------CCCEEEeeccCceEEEEecCCccccccccccccce
Confidence 111234455888999999998 99999999999999999997653221100000
Q ss_pred ---------------------------------------CCCccceee--------------------------------
Q 025649 126 ---------------------------------------KPLKGSQST-------------------------------- 134 (250)
Q Consensus 126 ---------------------------------------~~~~~~~~~-------------------------------- 134 (250)
.....+++.
T Consensus 366 I~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~ 445 (603)
T KOG0318|consen 366 IKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYE 445 (603)
T ss_pred EEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccc
Confidence 011112223
Q ss_pred ------cccceeEEEeeeeeecc------CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcc
Q 025649 135 ------SKVNIRDAEMEILDQSG------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 202 (250)
Q Consensus 135 ------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~ 202 (250)
+|++..++ +|..|... .........+..|.++|++++|| |++.||++|...+.+.+||..+...
T Consensus 446 ~s~vAv~~~~~~va-VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS---pd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVA-VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS---PDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred cceEEEcCCCCEEE-EecccceEEEEEecCCcccceeeeecccCCceEEEEC---CCCcEEEEeccCCcEEEEEcccCce
Confidence 33333333 22222221 00111122445689999999999 8999999999999999999999732
Q ss_pred eecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 203 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
......-|+..|++++|+| +..++|||+.|-.|.||++.
T Consensus 522 --------~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 522 --------KTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred --------ecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEcc
Confidence 2233445999999999998 88899999999999999874
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.9e-29 Score=175.69 Aligned_cols=217 Identities=16% Similarity=0.213 Sum_probs=177.2
Q ss_pred cEEEEcc-cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 2 WQIIDIR-QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 2 i~iwd~~-~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
|.+|++. .-+-..+++ +|.++|..+.|.+++. .+++++.|.+|+.||.++|+.++.++. |...+
T Consensus 71 I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s-~i~S~gtDk~v~~wD~~tG~~~rk~k~-------------h~~~v 135 (338)
T KOG0265|consen 71 IVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGS-HILSCGTDKTVRGWDAETGKRIRKHKG-------------HTSFV 135 (338)
T ss_pred EEEEeccccccceeeec-cccceeEeeeeccCCC-EEEEecCCceEEEEecccceeeehhcc-------------cccee
Confidence 6789954 445567888 9999999999999999 899999999999999999999999884 46778
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeee---eeccCeeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL---DQSGGKRLHL 157 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 157 (250)
.++..+. .....+.+++.|+++++||++....+..+... ..+.++.|..++..+.+.+.. ..|+......
T Consensus 136 Ns~~p~r-----rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k--yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 136 NSLDPSR-----RGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK--YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred eecCccc-----cCCeEEEecCCCceEEEEeecccchhhccccc--eeEEEEEecccccceeeccccCceeeeccccCcc
Confidence 8887543 24567788899999999999987776666544 678899999998888843333 3556666677
Q ss_pred eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC----ceeEEEecCCCCC
Q 025649 158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK----KVNWLCTTPTESE 233 (250)
Q Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~ 233 (250)
++.+.||...|+.+..+ ++|.++.+-+.|.++++||++.....+ +++..+.+|.- ....++|+| ++.
T Consensus 209 ~~~lsGh~DtIt~lsls---~~gs~llsnsMd~tvrvwd~rp~~p~~-----R~v~if~g~~hnfeknlL~cswsp-~~~ 279 (338)
T KOG0265|consen 209 LYTLSGHADTITGLSLS---RYGSFLLSNSMDNTVRVWDVRPFAPSQ-----RCVKIFQGHIHNFEKNLLKCSWSP-NGT 279 (338)
T ss_pred eEEeecccCceeeEEec---cCCCccccccccceEEEEEecccCCCC-----ceEEEeecchhhhhhhcceeeccC-CCC
Confidence 88999999999999999 899999999999999999999864432 44555655432 345668887 888
Q ss_pred eEEEeeCCceEEEEeC
Q 025649 234 NLVVCDTSKVVKVYSI 249 (250)
Q Consensus 234 ~l~s~~~d~~i~vw~~ 249 (250)
.+..|+.|+.+++||.
T Consensus 280 ~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 280 KITAGSADRFVYVWDT 295 (338)
T ss_pred ccccccccceEEEeec
Confidence 8999999999999985
No 42
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=171.29 Aligned_cols=209 Identities=15% Similarity=0.182 Sum_probs=166.3
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
||++|++..+.+++++. +|...|..++.+.|+. .|++|+.|..+.+||+.+|+.++.+. + |...|
T Consensus 40 tvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~TGkv~Rr~r-g------------H~aqV 104 (307)
T KOG0316|consen 40 TVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNS-KFASCGGDKAVQVWDVNTGKVDRRFR-G------------HLAQV 104 (307)
T ss_pred eEEeecccccceeeeec-CCCceeeecccccccc-ccccCCCCceEEEEEcccCeeeeecc-c------------cccee
Confidence 69999999999999999 9999999999999998 89999999999999999999999998 4 58899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce--eEeeccCCCCCCccceeecccceeEEEeeeeeeccC----ee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL--NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG----KR 154 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 154 (250)
+.+.|+. +...+++|+.|..+++||.++.. +++.+.. ....+.++..+. ..++ .|+.|+... +.
T Consensus 105 NtV~fNe------esSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a~D~V~Si~v~~--heIv-aGS~DGtvRtydiR~ 174 (307)
T KOG0316|consen 105 NTVRFNE------ESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-AKDGVSSIDVAE--HEIV-AGSVDGTVRTYDIRK 174 (307)
T ss_pred eEEEecC------cceEEEeccccceeEEEEcccCCCCccchhhh-hcCceeEEEecc--cEEE-eeccCCcEEEEEeec
Confidence 9999998 89999999999999999999743 2233322 234455554432 2333 444444432 11
Q ss_pred eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE--EecCCCC
Q 025649 155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL--CTTPTES 232 (250)
Q Consensus 155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ 232 (250)
......+ -..+|+|+.|+ ++++..+.++.|+++++-|-.++ +++..+++|.+.-+.+ ++.. ..
T Consensus 175 G~l~sDy--~g~pit~vs~s---~d~nc~La~~l~stlrLlDk~tG---------klL~sYkGhkn~eykldc~l~q-sd 239 (307)
T KOG0316|consen 175 GTLSSDY--FGHPITSVSFS---KDGNCSLASSLDSTLRLLDKETG---------KLLKSYKGHKNMEYKLDCCLNQ-SD 239 (307)
T ss_pred ceeehhh--cCCcceeEEec---CCCCEEEEeeccceeeecccchh---------HHHHHhcccccceeeeeeeecc-cc
Confidence 2222222 34589999999 89999999999999999999998 8888999998875554 3443 44
Q ss_pred CeEEEeeCCceEEEEeC
Q 025649 233 ENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 233 ~~l~s~~~d~~i~vw~~ 249 (250)
.++++|+.||.|++||+
T Consensus 240 thV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDL 256 (307)
T ss_pred eeEEeccCCceEEEEEe
Confidence 57999999999999997
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.4e-30 Score=184.10 Aligned_cols=213 Identities=15% Similarity=0.184 Sum_probs=171.0
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc--cceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN--KIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 78 (250)
||++||+++++++.++- +|...|..+.|+.. +++|+|.|.++.+||+.....+ ...-.+ |.+
T Consensus 258 TvrvWDv~tge~l~tli-hHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvG------------HrA 321 (499)
T KOG0281|consen 258 TVRVWDVNTGEPLNTLI-HHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLVG------------HRA 321 (499)
T ss_pred eEEEEeccCCchhhHHh-hhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHhh------------hhh
Confidence 79999999999999999 99999999999975 8999999999999999765422 222224 788
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKR 154 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 154 (250)
.|+.+.|. .+++++++.|.+|++|++.+.+.+..+..+. ..+.|+.+ .+++++ .|+.|. ++...
T Consensus 322 aVNvVdfd--------~kyIVsASgDRTikvW~~st~efvRtl~gHk-RGIAClQY--r~rlvV-SGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 322 AVNVVDFD--------DKYIVSASGDRTIKVWSTSTCEFVRTLNGHK-RGIACLQY--RDRLVV-SGSSDNTIRLWDIEC 389 (499)
T ss_pred heeeeccc--------cceEEEecCCceEEEEeccceeeehhhhccc-ccceehhc--cCeEEE-ecCCCceEEEEeccc
Confidence 88888885 5699999999999999999998887776653 55555554 345555 444333 34456
Q ss_pred eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649 155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 234 (250)
..+++.++||+.-|.|+.|. .+.+++|+.||+|++||+..+.........-++.....|++.|..+.| |...
T Consensus 390 G~cLRvLeGHEeLvRciRFd-----~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF---D~fq 461 (499)
T KOG0281|consen 390 GACLRVLEGHEELVRCIRFD-----NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF---DEFQ 461 (499)
T ss_pred cHHHHHHhchHHhhhheeec-----CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee---cceE
Confidence 67889999999999999996 478999999999999999987654333333456667789999999998 4557
Q ss_pred EEEeeCCceEEEEeC
Q 025649 235 LVVCDTSKVVKVYSI 249 (250)
Q Consensus 235 l~s~~~d~~i~vw~~ 249 (250)
+++++.|.+|.+||+
T Consensus 462 IvsssHddtILiWdF 476 (499)
T KOG0281|consen 462 IISSSHDDTILIWDF 476 (499)
T ss_pred EEeccCCCeEEEEEc
Confidence 999999999999996
No 44
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.5e-29 Score=183.71 Aligned_cols=234 Identities=18% Similarity=0.189 Sum_probs=181.5
Q ss_pred cEEEEcccce--e--------eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc-cceecCCCCCCCC
Q 025649 2 WQIIDIRQHC--L--------YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN-KIVNFGLPENNGN 70 (250)
Q Consensus 2 i~iwd~~~~~--~--------~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~ 70 (250)
|.|||..+.. . -.+|. ||...=.+|+|++.....|++++.|++|++||+...... ..+ ...
T Consensus 149 v~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~-------~p~ 220 (422)
T KOG0264|consen 149 VYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV-------DPK 220 (422)
T ss_pred EEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeEeeccCCCcEEEEeccccccCCccc-------cce
Confidence 6789876321 1 12788 999988899999998889999999999999999754321 001 011
Q ss_pred CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc-eeEeeccCCCCCCccceeecccceeEEEeeeeee
Q 025649 71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE-LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 149 (250)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (250)
.....|.+.|..++|++ .+..++++++.|+.+.|||++++ .........+...+.|++|+|-+..+++.++.|.
T Consensus 221 ~~~~~h~~~VeDV~~h~-----~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~ 295 (422)
T KOG0264|consen 221 TIFSGHEDVVEDVAWHP-----LHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADK 295 (422)
T ss_pred EEeecCCcceehhhccc-----cchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCC
Confidence 22233788999999998 57889999999999999999963 2233334445689999999998777765555444
Q ss_pred cc-----CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee-----cccccceeeeeeccC
Q 025649 150 SG-----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ-----TSINNDLLIKNINLN 219 (250)
Q Consensus 150 ~~-----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~ 219 (250)
+. ++-.+++.++.+|+..|.+|.|+| .....|++++.|+++.+||+..-...+ ..+.++++....+|.
T Consensus 296 tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP--h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~ 373 (422)
T KOG0264|consen 296 TVALWDLRNLNKPLHTFEGHEDEVFQVEWSP--HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT 373 (422)
T ss_pred cEEEeechhcccCceeccCCCcceEEEEeCC--CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc
Confidence 32 122337889999999999999996 556799999999999999998744332 355678888889999
Q ss_pred CceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 220 KKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 220 ~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
..|..+.|+|.+...|++.+.|+.+.||++.
T Consensus 374 ~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 374 AKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999999999999999999999999863
No 45
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.4e-29 Score=170.89 Aligned_cols=211 Identities=16% Similarity=0.207 Sum_probs=177.0
Q ss_pred CcEEEEcccceeeee--eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHCLYKS--LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~~~~~--l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
++++|+++..+.... .+ +|.+.|-.++|+|..+.+|++++.|.+|++||++.+++...+... .
T Consensus 43 tv~v~n~e~~r~~~~~~~~-gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~--------------~ 107 (313)
T KOG1407|consen 43 TVSVWNLERDRFRKELVYR-GHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK--------------G 107 (313)
T ss_pred ceEEEEecchhhhhhhccc-CCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc--------------C
Confidence 578999987766554 45 899999999999988779999999999999999999998888733 3
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeeccCeee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRL 155 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 155 (250)
.-..+.|+| ++++++++..|..|.+.|.++.+.....+.. ..+..+.|+.++.+++. .|...+..-..+
T Consensus 108 eni~i~wsp------~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL 179 (313)
T KOG1407|consen 108 ENINITWSP------DGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FEVNEISWNNSNDLFFLTNGLGCVEILSYPSL 179 (313)
T ss_pred cceEEEEcC------CCCEEEEecCcccEEEEEecccceeehhccc--ceeeeeeecCCCCEEEEecCCceEEEEecccc
Confidence 345678998 9999999999999999999988777665554 56777888876666653 244555566788
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
+++..+++|.....|+.|+ |+|++||+|+.|..+.+||+... -+.+.+.-+.-+|..+.|+- ||++|
T Consensus 180 kpv~si~AH~snCicI~f~---p~GryfA~GsADAlvSLWD~~EL---------iC~R~isRldwpVRTlSFS~-dg~~l 246 (313)
T KOG1407|consen 180 KPVQSIKAHPSNCICIEFD---PDGRYFATGSADALVSLWDVDEL---------ICERCISRLDWPVRTLSFSH-DGRML 246 (313)
T ss_pred ccccccccCCcceEEEEEC---CCCceEeeccccceeeccChhHh---------hhheeeccccCceEEEEecc-Cccee
Confidence 8899999999999999999 89999999999999999999997 45566778888999999996 99999
Q ss_pred EEeeCCceEEEE
Q 025649 236 VVCDTSKVVKVY 247 (250)
Q Consensus 236 ~s~~~d~~i~vw 247 (250)
|+||.|..|-|=
T Consensus 247 ASaSEDh~IDIA 258 (313)
T KOG1407|consen 247 ASASEDHFIDIA 258 (313)
T ss_pred eccCccceEEeE
Confidence 999999888653
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3.1e-28 Score=180.90 Aligned_cols=213 Identities=19% Similarity=0.275 Sum_probs=175.9
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+.+++.+..+. .|...|.++.|+|++. ++++++.||.|++||+++++....+. . +...+
T Consensus 74 ~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~-~------------~~~~i 138 (289)
T cd00200 74 TIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLR-G------------HTDWV 138 (289)
T ss_pred eEEEEEcCcccceEEEe-ccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEec-c------------CCCcE
Confidence 47899999988889999 9999999999999987 88888889999999999877766665 2 46789
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee---eeeccCeeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI---LDQSGGKRLHL 157 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 157 (250)
.++.++| ++.++++++.|+.|++||+++++....+..+ ...+.++.++|+++.+++.+. ...++....+.
T Consensus 139 ~~~~~~~------~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 139 NSVAFSP------DGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred EEEEEcC------cCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCcCEEEEecCCCcEEEEECCCCce
Confidence 9999998 7888888888999999999987766655533 458999999999977774332 11222333455
Q ss_pred eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE
Q 025649 158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV 237 (250)
Q Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 237 (250)
+..+..|...+.++.|+ +++.++++++.||.|++||+.++ .....+..|...+.+++|+| ++.+|++
T Consensus 212 ~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~i~i~~~~~~---------~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 278 (289)
T cd00200 212 LGTLRGHENGVNSVAFS---PDGYLLASGSEDGTIRVWDLRTG---------ECVQTLSGHTNSVTSLAWSP-DGKRLAS 278 (289)
T ss_pred ecchhhcCCceEEEEEc---CCCcEEEEEcCCCcEEEEEcCCc---------eeEEEccccCCcEEEEEECC-CCCEEEE
Confidence 66777888899999999 78889998888999999999986 45556668888999999997 7889999
Q ss_pred eeCCceEEEEe
Q 025649 238 CDTSKVVKVYS 248 (250)
Q Consensus 238 ~~~d~~i~vw~ 248 (250)
++.||.|++|+
T Consensus 279 ~~~d~~i~iw~ 289 (289)
T cd00200 279 GSADGTIRIWD 289 (289)
T ss_pred ecCCCeEEecC
Confidence 99999999996
No 47
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=166.44 Aligned_cols=207 Identities=22% Similarity=0.220 Sum_probs=165.1
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC--CCccceecCCCCCCCCCCcccCCCc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
|.+||+++|+.+++++ +|.+.|+.++|+.+.. .+++|+.|.++++||-++. ++++.+.. ..+.
T Consensus 83 v~vwDV~TGkv~Rr~r-gH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQilde-------------a~D~ 147 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFR-GHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDE-------------AKDG 147 (307)
T ss_pred EEEEEcccCeeeeecc-cccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhh-------------hcCc
Confidence 6899999999999999 9999999999999998 9999999999999998754 56666653 2577
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----cCeee
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRL 155 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 155 (250)
|.++.+. +..|++|+.||+++.||++.|+....... .+++++.|+++++..+ ++..+.. +....
T Consensus 148 V~Si~v~--------~heIvaGS~DGtvRtydiR~G~l~sDy~g---~pit~vs~s~d~nc~L-a~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 148 VSSIDVA--------EHEIVAGSVDGTVRTYDIRKGTLSSDYFG---HPITSVSFSKDGNCSL-ASSLDSTLRLLDKETG 215 (307)
T ss_pred eeEEEec--------ccEEEeeccCCcEEEEEeecceeehhhcC---CcceeEEecCCCCEEE-Eeeccceeeecccchh
Confidence 8888875 68899999999999999999887655444 5899999999999888 4544443 45677
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc-eeEEEecCCCCCe
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK-VNWLCTTPTESEN 234 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~ 234 (250)
+.+..+++|.+.-..+..+ +......+++||+||.|++||+... ..+..+..+... +.++.++|....
T Consensus 216 klL~sYkGhkn~eykldc~-l~qsdthV~sgSEDG~Vy~wdLvd~---------~~~sk~~~~~~v~v~dl~~hp~~~~- 284 (307)
T KOG0316|consen 216 KLLKSYKGHKNMEYKLDCC-LNQSDTHVFSGSEDGKVYFWDLVDE---------TQISKLSVVSTVIVTDLSCHPTMDD- 284 (307)
T ss_pred HHHHHhcccccceeeeeee-ecccceeEEeccCCceEEEEEeccc---------eeeeeeccCCceeEEeeecccCccc-
Confidence 8889999998866555443 1155689999999999999999997 555666666666 889999996655
Q ss_pred EEEeeCCceEEEE
Q 025649 235 LVVCDTSKVVKVY 247 (250)
Q Consensus 235 l~s~~~d~~i~vw 247 (250)
|+++... .+..|
T Consensus 285 f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 285 FITATGH-GDLFW 296 (307)
T ss_pred eeEecCC-ceece
Confidence 4444423 34444
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=7.4e-29 Score=177.79 Aligned_cols=225 Identities=19% Similarity=0.149 Sum_probs=177.5
Q ss_pred CcEEEEccccee----eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC--Cccceec----------CC
Q 025649 1 MWQIIDIRQHCL----YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR--PNKIVNF----------GL 64 (250)
Q Consensus 1 ti~iwd~~~~~~----~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~----------~~ 64 (250)
|+++|-++.++. +..-+ ||...|.+++..++|. .+++||.|..|++|+..+.. ....... ..
T Consensus 170 tl~Lw~~~~~~~~~~~~~~~~-GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 170 TLRLWKWNVGENKVKALKVCR-GHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred eEEEEEecCchhhhhHHhHhc-ccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 578888876653 33445 9999999999999999 89999999999999943211 1111100 00
Q ss_pred CCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE-
Q 025649 65 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE- 143 (250)
Q Consensus 65 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 143 (250)
....+...+..|...|.++.|++ ...+++++.|.+|+.||+.++.....+... ....++.++|..+++++
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d-------~~v~yS~SwDHTIk~WDletg~~~~~~~~~--ksl~~i~~~~~~~Ll~~g 318 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSD-------ATVIYSVSWDHTIKVWDLETGGLKSTLTTN--KSLNCISYSPLSKLLASG 318 (423)
T ss_pred cccCceEEecccccceeeEEEcC-------CCceEeecccceEEEEEeecccceeeeecC--cceeEeecccccceeeec
Confidence 01112244566999999999994 788999999999999999999888777665 78899999999988884
Q ss_pred -----eeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc
Q 025649 144 -----MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 218 (250)
Q Consensus 144 -----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 218 (250)
...+|.+.....-..++|.+|++.|.++.|+| .+..+|++|+.|+++++||+++.. .++..+.+|
T Consensus 319 ssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp--~~~~~~~S~S~D~t~klWDvRS~k--------~plydI~~h 388 (423)
T KOG0313|consen 319 SSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP--TNEFQLVSGSYDNTVKLWDVRSTK--------APLYDIAGH 388 (423)
T ss_pred CCCCceeecCCCCCCCceeEEeeecchhhhhheecCC--CCceEEEEEecCCeEEEEEeccCC--------CcceeeccC
Confidence 33455555555556678999999999999996 456789999999999999999973 367788999
Q ss_pred CCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 219 NKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
...|.++.|. ++..|++|+.|.+|+++.
T Consensus 389 ~DKvl~vdW~--~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 389 NDKVLSVDWN--EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred CceEEEEecc--CCceEEeccCcceEEEec
Confidence 9999999997 677899999999999986
No 49
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=7.2e-28 Score=188.44 Aligned_cols=209 Identities=13% Similarity=0.127 Sum_probs=148.0
Q ss_pred eeccCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 15 SLRAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 15 ~l~~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
.+. +|.+.|.+++|+| ++. +|++|+.|++|++||+.++....... .....+..|...|.+++|+|
T Consensus 70 ~l~-GH~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~------~~l~~L~gH~~~V~~l~f~P------ 135 (493)
T PTZ00421 70 ILL-GQEGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQNIS------DPIVHLQGHTKKVGIVSFHP------ 135 (493)
T ss_pred eEe-CCCCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCccccccC------cceEEecCCCCcEEEEEeCc------
Confidence 467 9999999999999 677 89999999999999997653211100 00011123678999999998
Q ss_pred C-CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeeeccccCcccc-E
Q 025649 94 T-NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGHTAA-A 168 (250)
Q Consensus 94 ~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~-v 168 (250)
+ +++|++++.|++|++||+++++....+..+ ...+.+++|+|+|.++++.+ ....++.+..+.+..+.+|.+. +
T Consensus 136 ~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h-~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~ 214 (493)
T PTZ00421 136 SAMNVLASAGADMVVNVWDVERGKAVEVIKCH-SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKS 214 (493)
T ss_pred CCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC-CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcc
Confidence 5 479999999999999999998877666543 46799999999999998521 2222333444456677788764 3
Q ss_pred EEEEeecCCCCCcEEEEee----CCCeEEEEecCCCcceecccccceeeeeeccC-CceeEEEecCCCCCeEEEee-CCc
Q 025649 169 SCVAFSMFGERGKYLISGG----NDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCD-TSK 242 (250)
Q Consensus 169 ~~~~~~p~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~-~d~ 242 (250)
..+.|. +++..+++++ .|+.|++||+++.. ..+.....+. ..+....|++ ++.+|++++ .|+
T Consensus 215 ~~~~w~---~~~~~ivt~G~s~s~Dr~VklWDlr~~~--------~p~~~~~~d~~~~~~~~~~d~-d~~~L~lggkgDg 282 (493)
T PTZ00421 215 QRCLWA---KRKDLIITLGCSKSQQRQIMLWDTRKMA--------SPYSTVDLDQSSALFIPFFDE-DTNLLYIGSKGEG 282 (493)
T ss_pred eEEEEc---CCCCeEEEEecCCCCCCeEEEEeCCCCC--------CceeEeccCCCCceEEEEEcC-CCCEEEEEEeCCC
Confidence 467788 6666666543 58999999998763 2222222233 3344445665 888888877 599
Q ss_pred eEEEEeCC
Q 025649 243 VVKVYSIS 250 (250)
Q Consensus 243 ~i~vw~~~ 250 (250)
.|++||+.
T Consensus 283 ~Iriwdl~ 290 (493)
T PTZ00421 283 NIRCFELM 290 (493)
T ss_pred eEEEEEee
Confidence 99999974
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=7.1e-30 Score=188.02 Aligned_cols=215 Identities=13% Similarity=0.160 Sum_probs=175.6
Q ss_pred CcEEEEccc-ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~-~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
.|+||++.. +++++++. +|..+|.+++|+++|. .|+|+|.|+.|++||+++|+++..+..+ ..
T Consensus 238 ~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~-~fLS~sfD~~lKlwDtETG~~~~~f~~~--------------~~ 301 (503)
T KOG0282|consen 238 LVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGT-SFLSASFDRFLKLWDTETGQVLSRFHLD--------------KV 301 (503)
T ss_pred eEEEEEEecCcceehhhh-cchhhhhhhhccccCC-eeeeeecceeeeeeccccceEEEEEecC--------------CC
Confidence 378999886 89999999 9999999999999999 7999999999999999999999999855 66
Q ss_pred eeEEecCCCcccCCCC-CEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccC
Q 025649 80 VHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGG 152 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 152 (250)
++++.|.| ++ +.+++|+.|+.|+.||+++++.+.....+. ..+..+.|-++|+++++ +..|+....
T Consensus 302 ~~cvkf~p------d~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL-g~i~~i~F~~~g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 302 PTCVKFHP------DNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL-GAILDITFVDEGRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred ceeeecCC------CCCcEEEEecCCCcEEEEeccchHHHHHHHhhh-hheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence 89999999 55 899999999999999999998766655543 78899999999999985 334444444
Q ss_pred eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc--eeEEEecCC
Q 025649 153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK--VNWLCTTPT 230 (250)
Q Consensus 153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~ 230 (250)
...+.+.....|. ..|+..+ |++++++.-+.|+.|.+|.+...... .....+.+|... -..+.|+|
T Consensus 375 v~ik~i~~~~~hs--mP~~~~~---P~~~~~~aQs~dN~i~ifs~~~~~r~------nkkK~feGh~vaGys~~v~fSp- 442 (503)
T KOG0282|consen 375 VPIKNIADPEMHT--MPCLTLH---PNGKWFAAQSMDNYIAIFSTVPPFRL------NKKKRFEGHSVAGYSCQVDFSP- 442 (503)
T ss_pred ccchhhcchhhcc--CcceecC---CCCCeehhhccCceEEEEeccccccc------CHhhhhcceeccCceeeEEEcC-
Confidence 4444333444444 4688888 89999999999999999997765433 333456777654 44568887
Q ss_pred CCCeEEEeeCCceEEEEeCC
Q 025649 231 ESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 231 ~~~~l~s~~~d~~i~vw~~~ 250 (250)
||.+|++|+.||.+.+||.+
T Consensus 443 DG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred CCCeEEeecCCccEEEeech
Confidence 99999999999999999963
No 51
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.4e-28 Score=168.96 Aligned_cols=221 Identities=14% Similarity=0.112 Sum_probs=177.7
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
++.||=-.+|+.+.++. ||++.|.|+..+-+.+ .++||+.|.++++||+++|+.+..++.+ ..|
T Consensus 33 ~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~-~liTGSAD~t~kLWDv~tGk~la~~k~~--------------~~V 96 (327)
T KOG0643|consen 33 TPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSK-HLITGSADQTAKLWDVETGKQLATWKTN--------------SPV 96 (327)
T ss_pred CceEEEecCCceeeeec-CCCceEEEEEecCCcc-eeeeccccceeEEEEcCCCcEEEEeecC--------------Cee
Confidence 45788777899999999 9999999999999999 8999999999999999999999999844 789
Q ss_pred eEEecCCCcccCCCCCEEEEEe-----CCCeEEEEeCCC-------ceeEeeccCCCCCCccceeecccceeEEE---ee
Q 025649 81 HAIAIPDADMLDKTNKICVVAK-----GDGVVDVINIES-------ELNISRSKSTTKPLKGSQSTSKVNIRDAE---ME 145 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~-----~d~~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 145 (250)
..+.|++ ++++++... ..+.|.++|++. ..+...+..+ ...+..+.|.|-++.+++ .|
T Consensus 97 k~~~F~~------~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~skit~a~Wg~l~~~ii~Ghe~G 169 (327)
T KOG0643|consen 97 KRVDFSF------GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSKITSALWGPLGETIIAGHEDG 169 (327)
T ss_pred EEEeecc------CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccceeeeeecccCCEEEEecCCC
Confidence 9999998 888887774 457899999984 2223333333 378889999999999984 22
Q ss_pred eeeeccCee-eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc------------------
Q 025649 146 ILDQSGGKR-LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS------------------ 206 (250)
Q Consensus 146 ~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------------ 206 (250)
....++.+. .+.+...+.|...|+.+.++ ++..+++++|.|.+-++||..+.....+.
T Consensus 170 ~is~~da~~g~~~v~s~~~h~~~Ind~q~s---~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~V 246 (327)
T KOG0643|consen 170 SISIYDARTGKELVDSDEEHSSKINDLQFS---RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHV 246 (327)
T ss_pred cEEEEEcccCceeeechhhhcccccccccc---CCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceE
Confidence 233333332 34455667788899999999 89999999999999999999887654310
Q ss_pred ----------------------------cccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 207 ----------------------------INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 207 ----------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
--.+.+...++|-++|++++++| +|+..++|+.||.|++.-
T Consensus 247 ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 247 ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred EecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEE
Confidence 00233456789999999999998 999999999999999864
No 52
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-28 Score=186.48 Aligned_cols=223 Identities=14% Similarity=0.217 Sum_probs=185.0
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|++|+-.+++...... .+.+.|+++.|+++|. +|+.|..+|.|.|||..+.+.+..+..+ |...|-
T Consensus 199 vylW~~~s~~v~~l~~-~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~~~~~------------h~~rvg 264 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCS-FGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRTLRGS------------HASRVG 264 (484)
T ss_pred EEEEecCCCceEEeEe-cCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhccccccccCC------------cCceeE
Confidence 7899999998776666 5589999999999999 8999999999999999998888888764 678899
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeee
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLD 158 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 158 (250)
+++|. +..+.+|+.|+.|..+|++..+........+...+..++|++|+.++++-+ ....++....+++
T Consensus 265 ~laW~--------~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 265 SLAWN--------SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred EEecc--------CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 99996 578999999999999999997776665555678999999999999999421 2233344555667
Q ss_pred ccccCccccEEEEEeecCCCCCcEEEEee--CCCeEEEEecCCCcceec-------------------------------
Q 025649 159 YSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQT------------------------------- 205 (250)
Q Consensus 159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~------------------------------- 205 (250)
..+..|.+.|.+++|+|+. ..+||+|+ .|++|++||..++..+..
T Consensus 337 ~~~~~H~aAVKA~awcP~q--~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQ--SGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred EEEeccceeeeEeeeCCCc--cCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 7889999999999999854 46888864 699999999998865531
Q ss_pred ---ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 206 ---SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 206 ---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
......+..+.+|...|..++++| ||+.+++|+.|.++++|++
T Consensus 415 lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWNL 460 (484)
T ss_pred EEeccccceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEeccc
Confidence 112234567789999999999998 8999999999999999985
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.3e-27 Score=177.60 Aligned_cols=215 Identities=20% Similarity=0.268 Sum_probs=176.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+.+++....+. +|...+..+.|+|+++ +|++++.||.|++||+.+++.+..+.. +...+
T Consensus 32 ~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~~~~~~~-------------~~~~i 96 (289)
T cd00200 32 TIKVWDLETGELLRTLK-GHTGPVRDVAASADGT-YLASGSSDKTIRLWDLETGECVRTLTG-------------HTSYV 96 (289)
T ss_pred EEEEEEeeCCCcEEEEe-cCCcceeEEEECCCCC-EEEEEcCCCeEEEEEcCcccceEEEec-------------cCCcE
Confidence 37899999988888888 9999999999999998 899999999999999998777666652 35689
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHL 157 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 157 (250)
.++.++| +++++++++.|+.|++||+++++....+.. +...+.++.++|++.+++... ....++....+.
T Consensus 97 ~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 169 (289)
T cd00200 97 SSVAFSP------DGRILSSSSRDKTIKVWDVETGKCLTTLRG-HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169 (289)
T ss_pred EEEEEcC------CCCEEEEecCCCeEEEEECCCcEEEEEecc-CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence 9999998 788888888899999999998777666553 346799999999988877422 112223333455
Q ss_pred eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE
Q 025649 158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV 237 (250)
Q Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 237 (250)
+..+..|...+.++.|+ |+++.+++++.|+.|++||++.+ ..+..+..|...+.++.|+| ++.++++
T Consensus 170 ~~~~~~~~~~i~~~~~~---~~~~~l~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~-~~~~~~~ 236 (289)
T cd00200 170 VATLTGHTGEVNSVAFS---PDGEKLLSSSSDGTIKLWDLSTG---------KCLGTLRGHENGVNSVAFSP-DGYLLAS 236 (289)
T ss_pred ceeEecCccccceEEEC---CCcCEEEEecCCCcEEEEECCCC---------ceecchhhcCCceEEEEEcC-CCcEEEE
Confidence 66677888899999999 88889999999999999999986 45555568888999999998 6888888
Q ss_pred eeCCceEEEEeCC
Q 025649 238 CDTSKVVKVYSIS 250 (250)
Q Consensus 238 ~~~d~~i~vw~~~ 250 (250)
++.||.|++||+.
T Consensus 237 ~~~~~~i~i~~~~ 249 (289)
T cd00200 237 GSEDGTIRVWDLR 249 (289)
T ss_pred EcCCCcEEEEEcC
Confidence 8889999999973
No 54
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.5e-27 Score=170.30 Aligned_cols=212 Identities=13% Similarity=0.145 Sum_probs=169.0
Q ss_pred EEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeE
Q 025649 3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA 82 (250)
Q Consensus 3 ~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (250)
.||++.+++....+. +|.+.|+++.|+.+|. +||||+.+|.|+||+..++.....+... -..+.-
T Consensus 89 flW~~~~ge~~~elt-gHKDSVt~~~Fshdgt-lLATGdmsG~v~v~~~stg~~~~~~~~e-------------~~dieW 153 (399)
T KOG0296|consen 89 FLWDISTGEFAGELT-GHKDSVTCCSFSHDGT-LLATGDMSGKVLVFKVSTGGEQWKLDQE-------------VEDIEW 153 (399)
T ss_pred EEEEccCCcceeEec-CCCCceEEEEEccCce-EEEecCCCccEEEEEcccCceEEEeecc-------------cCceEE
Confidence 689999999999999 9999999999999999 9999999999999999999887777522 356777
Q ss_pred EecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCee--
Q 025649 83 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKR-- 154 (250)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-- 154 (250)
+.|+| .+.+|++|+.||.+-.|.+.++...+.+.. +...+.+-.|.|+|+.+++ +..|+.....+
T Consensus 154 l~WHp------~a~illAG~~DGsvWmw~ip~~~~~kv~~G-h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 154 LKWHP------RAHILLAGSTDGSVWMWQIPSQALCKVMSG-HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred EEecc------cccEEEeecCCCcEEEEECCCcceeeEecC-CCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 88998 899999999999999999988644444444 4577788888888887763 11121110000
Q ss_pred --------------------------------------ee----------------------------------------
Q 025649 155 --------------------------------------LH---------------------------------------- 156 (250)
Q Consensus 155 --------------------------------------~~---------------------------------------- 156 (250)
.+
T Consensus 227 ~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v 306 (399)
T KOG0296|consen 227 KITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV 306 (399)
T ss_pred EecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc
Confidence 00
Q ss_pred ------------eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeE
Q 025649 157 ------------LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 224 (250)
Q Consensus 157 ------------~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 224 (250)
.++..-.|...|..+.|- + ..+|++++.+|.|+.||.+++ .++..+.+|...|..
T Consensus 307 dG~i~iyD~a~~~~R~~c~he~~V~~l~w~---~-t~~l~t~c~~g~v~~wDaRtG---------~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 307 DGTIAIYDLAASTLRHICEHEDGVTKLKWL---N-TDYLLTACANGKVRQWDARTG---------QLKFTYTGHQMGILD 373 (399)
T ss_pred cceEEEEecccchhheeccCCCceEEEEEc---C-cchheeeccCceEEeeecccc---------ceEEEEecCchheeE
Confidence 001222466778888887 5 678899999999999999998 788899999999999
Q ss_pred EEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 225 LCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 225 ~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
++.+| +.++++|+|.|++.+||+++
T Consensus 374 f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 374 FALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcC-CCcEEEEecCCCeEEEEecC
Confidence 99998 89999999999999999864
No 55
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.5e-28 Score=179.34 Aligned_cols=209 Identities=19% Similarity=0.288 Sum_probs=172.1
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|+|+|+++...++.++ +|+.+|..+.|+|++..+|++|++|+.+++||+.+...+..+. + |.+.|.
T Consensus 92 V~vfD~k~r~iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~------------htDYVR 157 (487)
T KOG0310|consen 92 VKVFDMKSRVILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-G------------HTDYVR 157 (487)
T ss_pred EEEeccccHHHHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-C------------CcceeE
Confidence 7899987777888899 9999999999999987799999999999999998877533343 3 789999
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-----eeeeccCeeee
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-----ILDQSGGKRLH 156 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 156 (250)
+.+++| .++..+++|++||.|++||++... .......+..++..+.+-|.|..+++.| .||...+. +
T Consensus 158 ~g~~~~-----~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--q 229 (487)
T KOG0310|consen 158 CGDISP-----ANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--Q 229 (487)
T ss_pred eecccc-----CCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--e
Confidence 999999 467899999999999999999864 2333334458999999999999999744 45554333 3
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
.+..+..|...|+|+.+. .++..|++|+-|+.+++||+.+. .+.......++|.+++.+| +++.++
T Consensus 230 ll~~~~~H~KtVTcL~l~---s~~~rLlS~sLD~~VKVfd~t~~----------Kvv~s~~~~~pvLsiavs~-dd~t~v 295 (487)
T KOG0310|consen 230 LLTSMFNHNKTVTCLRLA---SDSTRLLSGSLDRHVKVFDTTNY----------KVVHSWKYPGPVLSIAVSP-DDQTVV 295 (487)
T ss_pred ehhhhhcccceEEEEEee---cCCceEeecccccceEEEEccce----------EEEEeeecccceeeEEecC-CCceEE
Confidence 345555699999999999 89999999999999999997774 3345567889999999998 788899
Q ss_pred EeeCCceEEE
Q 025649 237 VCDTSKVVKV 246 (250)
Q Consensus 237 s~~~d~~i~v 246 (250)
.|..||.+.+
T Consensus 296 iGmsnGlv~~ 305 (487)
T KOG0310|consen 296 IGMSNGLVSI 305 (487)
T ss_pred Eecccceeee
Confidence 9999997754
No 56
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.3e-29 Score=193.07 Aligned_cols=201 Identities=13% Similarity=0.165 Sum_probs=162.0
Q ss_pred eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649 11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM 90 (250)
Q Consensus 11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (250)
++++.|+ ||.+.|.+|.||.++ +|+++|.|.+||||++...++++.|. |++.|+|++|+|
T Consensus 360 kP~~ef~-GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~--------------HndfVTcVaFnP--- 419 (712)
T KOG0283|consen 360 KPFCEFK-GHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS--------------HNDFVTCVAFNP--- 419 (712)
T ss_pred cchhhhh-ccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe--------------cCCeeEEEEecc---
Confidence 5667888 999999999999987 79999999999999999999999998 899999999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc----Ceeeeeec--cc---
Q 025649 91 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDY--SV--- 161 (250)
Q Consensus 91 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~--- 161 (250)
.|.+++++|+-|+.||||++...+........ ..|++++|.|||+..+ +|.+++.. ....+... .+
T Consensus 420 --vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~av-IGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 420 --VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKGAV-IGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred --cCCCcEeecccccceEEeecCcCeeEeehhhh--hhheeEEeccCCceEE-EEEeccEEEEEEccCCeEEEeeeEeec
Confidence 69999999999999999999987766655554 7899999999999988 77766652 11111111 11
Q ss_pred ----cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc--eeEEEecCCCCCeE
Q 025649 162 ----GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK--VNWLCTTPTESENL 235 (250)
Q Consensus 162 ----~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l 235 (250)
..|. .|+.+.|.|-.++ .++..+.|..|+|+|.+.. .++..++++... -....|.+ ||++|
T Consensus 495 ~~Kk~~~~-rITG~Q~~p~~~~--~vLVTSnDSrIRI~d~~~~---------~lv~KfKG~~n~~SQ~~Asfs~-Dgk~I 561 (712)
T KOG0283|consen 495 NKKKKQGK-RITGLQFFPGDPD--EVLVTSNDSRIRIYDGRDK---------DLVHKFKGFRNTSSQISASFSS-DGKHI 561 (712)
T ss_pred cCccccCc-eeeeeEecCCCCC--eEEEecCCCceEEEeccch---------hhhhhhcccccCCcceeeeEcc-CCCEE
Confidence 1233 7999999964433 5777778999999999876 555666665443 33456776 99999
Q ss_pred EEeeCCceEEEEeC
Q 025649 236 VVCDTSKVVKVYSI 249 (250)
Q Consensus 236 ~s~~~d~~i~vw~~ 249 (250)
++++.|..|++|++
T Consensus 562 Vs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 562 VSASEDSWVYIWKN 575 (712)
T ss_pred EEeecCceEEEEeC
Confidence 99999999999986
No 57
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=185.23 Aligned_cols=222 Identities=14% Similarity=0.173 Sum_probs=181.3
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|+|||..++-+..+|. .|++.|+.+.|+..+. .+++.|.||+|+.||+...+..+++..+ .+....
T Consensus 374 VKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P------------~p~Qfs 439 (893)
T KOG0291|consen 374 VKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSP------------EPIQFS 439 (893)
T ss_pred EEEEeccCceEEEEec-cCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCC------------Cceeee
Confidence 7999999999999999 9999999999999999 8999999999999999999999999866 466778
Q ss_pred EEecCCCcccCCCCCEEEEEeCCC-eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCe-----ee
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDG-VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK-----RL 155 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 155 (250)
+++..| .|.++.+|+.|. .|.+|++++|+.+..+..++ +++.+++|+|.|..++ .++||.++.. ..
T Consensus 440 cvavD~------sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE-gPVs~l~f~~~~~~La-S~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 440 CVAVDP------SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE-GPVSGLSFSPDGSLLA-SGSWDKTVRIWDIFSSS 511 (893)
T ss_pred EEEEcC------CCCEEEeeccceEEEEEEEeecCeeeehhcCCC-CcceeeEEccccCeEE-eccccceEEEEEeeccC
Confidence 888888 899999998876 69999999999988887775 8999999999999998 7777765431 11
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccc-----------cceeeeeeccCCceeE
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN-----------NDLLIKNINLNKKVNW 224 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~ 224 (250)
....+++ +...+..++|+ |+|+.++++..||.|.+||.+...+...+.+ ..............+.
T Consensus 512 ~~vEtl~-i~sdvl~vsfr---PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftt 587 (893)
T KOG0291|consen 512 GTVETLE-IRSDVLAVSFR---PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTT 587 (893)
T ss_pred ceeeeEe-eccceeEEEEc---CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEE
Confidence 1122332 45678999999 8999999999999999999988765532111 1111112233467899
Q ss_pred EEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 225 LCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 225 ~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+++++ ||..|++|+..+.|++|+++
T Consensus 588 i~ySa-DG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 588 ICYSA-DGKCILAGGESNSICIYDVP 612 (893)
T ss_pred EEEcC-CCCEEEecCCcccEEEEECc
Confidence 99997 99999999999999999974
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.3e-28 Score=165.06 Aligned_cols=217 Identities=15% Similarity=0.161 Sum_probs=170.2
Q ss_pred cEEEEcccceeeeeec-cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCc
Q 025649 2 WQIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+.|-++...+-+..+. ..-.+.+..++|++...+.+++++.||++++||+.. ..++..++. |...
T Consensus 40 L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-------------H~~E 106 (311)
T KOG0277|consen 40 LFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE-------------HKRE 106 (311)
T ss_pred EEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh-------------hhhh
Confidence 4455554333333332 125678999999999877999999999999999653 356677763 5789
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc-eeEEE------eeeeeeccC
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN-IRDAE------MEILDQSGG 152 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~ 152 (250)
|.++.|++ .++..+++++.|++|++|+..-++.+.++..+ ...|...+|+|.- +.+++ ...||....
T Consensus 107 V~Svdwn~-----~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh-~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~ 180 (311)
T KOG0277|consen 107 VYSVDWNT-----VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH-NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP 180 (311)
T ss_pred eEEecccc-----ccceeEEeeccCCceEeecCCCCcceEeecCC-ccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence 99999998 57888899999999999999998888887764 5889999999964 44443 233443322
Q ss_pred eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649 153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
.+.+ .+..|...|.|+.|+. .+.+.++||+.|+.|+.||+++.. .++..+.+|.-.|..+.|+|...
T Consensus 181 --gk~~-~i~ah~~Eil~cdw~k--y~~~vl~Tg~vd~~vr~wDir~~r--------~pl~eL~gh~~AVRkvk~Sph~~ 247 (311)
T KOG0277|consen 181 --GKFM-SIEAHNSEILCCDWSK--YNHNVLATGGVDNLVRGWDIRNLR--------TPLFELNGHGLAVRKVKFSPHHA 247 (311)
T ss_pred --Ccee-EEEeccceeEeecccc--cCCcEEEecCCCceEEEEehhhcc--------ccceeecCCceEEEEEecCcchh
Confidence 2222 3888999999999996 356799999999999999999974 45667789999999999999888
Q ss_pred CeEEEeeCCceEEEEeCC
Q 025649 233 ENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 233 ~~l~s~~~d~~i~vw~~~ 250 (250)
.+|++++.|-+++|||.+
T Consensus 248 ~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPE 265 (311)
T ss_pred hHhhhccccceEEecccc
Confidence 899999999999999963
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=5.2e-28 Score=189.68 Aligned_cols=208 Identities=18% Similarity=0.214 Sum_probs=176.6
Q ss_pred CcEEEEcccceeeee-eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~-l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
||++||..+++.+.. +. ||.+.|.++++...+. +|++|+.|.++++||..+|++...+. + |...
T Consensus 229 tl~~~~~~~~~~i~~~l~-GH~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~C~~~l~-g------------h~st 293 (537)
T KOG0274|consen 229 TLHLWDLNNGYLILTRLV-GHFGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGECTHSLQ-G------------HTSS 293 (537)
T ss_pred eeEEeecccceEEEeecc-CCCCCceeEEEecCCC-EEEEEecCCcEEeEecCCCcEEEEec-C------------CCce
Confidence 578999999999888 99 9999999999998555 89999999999999999999999998 4 5788
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeee
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRL 155 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 155 (250)
+.++... +.++++|+.|.+|++|+++++..+..+.. +...|.++..+ +.+++ .++.|. +.....
T Consensus 294 v~~~~~~--------~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~~~lv-sgs~d~~v~VW~~~~~ 361 (537)
T KOG0274|consen 294 VRCLTID--------PFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--EPLLV-SGSYDGTVKVWDPRTG 361 (537)
T ss_pred EEEEEcc--------CceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--CCEEE-EEecCceEEEEEhhhc
Confidence 8888875 46778899999999999999999988887 56899999988 55555 333333 334588
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
++++.+.+|...|+++.+. .. .++++|+.|++|++||+++.. +++..+.+|.+-+..+.+ .+++|
T Consensus 362 ~cl~sl~gH~~~V~sl~~~---~~-~~~~Sgs~D~~IkvWdl~~~~--------~c~~tl~~h~~~v~~l~~---~~~~L 426 (537)
T KOG0274|consen 362 KCLKSLSGHTGRVYSLIVD---SE-NRLLSGSLDTTIKVWDLRTKR--------KCIHTLQGHTSLVSSLLL---RDNFL 426 (537)
T ss_pred eeeeeecCCcceEEEEEec---Cc-ceEEeeeeccceEeecCCchh--------hhhhhhcCCccccccccc---cccee
Confidence 8999999999999999886 43 899999999999999999962 355677889888887766 45689
Q ss_pred EEeeCCceEEEEeCC
Q 025649 236 VVCDTSKVVKVYSIS 250 (250)
Q Consensus 236 ~s~~~d~~i~vw~~~ 250 (250)
++++.|++|++||.+
T Consensus 427 vs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 427 VSSSADGTIKLWDAE 441 (537)
T ss_pred EeccccccEEEeecc
Confidence 999999999999863
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9e-27 Score=163.51 Aligned_cols=208 Identities=13% Similarity=0.173 Sum_probs=156.7
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
|||.-++.+++.++.|. ||...|.+|+.+|-+. .+++++.|++|++||++..++...+... .-
T Consensus 81 tIryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~---------------~~ 143 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLS---------------GR 143 (311)
T ss_pred ceEEEEeecCceEEEcC-CCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecC---------------CC
Confidence 68999999999999999 9999999999999998 8999999999999999988888777644 12
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc-ee---EeeccCCCCCCccceeecccceeEEEeeeeee----ccC
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE-LN---ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGG 152 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 152 (250)
...++.| .|-++|++...+.|++||++.- +- ...+..........+.|+|||++++. ..... .+.
T Consensus 144 pi~AfDp------~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl-sT~~s~~~~lDA 216 (311)
T KOG1446|consen 144 PIAAFDP------EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL-STNASFIYLLDA 216 (311)
T ss_pred cceeECC------CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE-EeCCCcEEEEEc
Confidence 3456666 9999999998889999999973 22 22233344578899999999999983 22111 122
Q ss_pred eeeeeeccccCcccc---EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec-cCCceeEEEec
Q 025649 153 KRLHLDYSVGGHTAA---ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTT 228 (250)
Q Consensus 153 ~~~~~~~~~~~h~~~---v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 228 (250)
-.+..+.++.++... --...|+ |+++++++|+.||+|.+|+++++ ..+..+.+ +..++.++.|+
T Consensus 217 f~G~~~~tfs~~~~~~~~~~~a~ft---Pds~Fvl~gs~dg~i~vw~~~tg---------~~v~~~~~~~~~~~~~~~fn 284 (311)
T KOG1446|consen 217 FDGTVKSTFSGYPNAGNLPLSATFT---PDSKFVLSGSDDGTIHVWNLETG---------KKVAVLRGPNGGPVSCVRFN 284 (311)
T ss_pred cCCcEeeeEeeccCCCCcceeEEEC---CCCcEEEEecCCCcEEEEEcCCC---------cEeeEecCCCCCCccccccC
Confidence 222344455444332 2466788 89999999999999999999998 44455555 68889999998
Q ss_pred CCCCCeEEEeeCCceEEEE
Q 025649 229 PTESENLVVCDTSKVVKVY 247 (250)
Q Consensus 229 ~~~~~~l~s~~~d~~i~vw 247 (250)
| . +..-++.+..+-+|
T Consensus 285 P-~--~~mf~sa~s~l~fw 300 (311)
T KOG1446|consen 285 P-R--YAMFVSASSNLVFW 300 (311)
T ss_pred C-c--eeeeeecCceEEEE
Confidence 7 3 33344445567777
No 61
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=5.2e-28 Score=187.06 Aligned_cols=211 Identities=17% Similarity=0.185 Sum_probs=179.9
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
.|++|+..+.++++++. . +.+.+..|.|.++ ++++|...|.+.+||+.+...+.+++. |.+.|
T Consensus 395 SikiWn~~t~kciRTi~-~--~y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~~l~Eti~A-------------HdgaI 457 (888)
T KOG0306|consen 395 SIKIWNRDTLKCIRTIT-C--GYILASKFVPGDR-YIVLGTKNGELQVFDLASASLVETIRA-------------HDGAI 457 (888)
T ss_pred cEEEEEccCcceeEEec-c--ccEEEEEecCCCc-eEEEeccCCceEEEEeehhhhhhhhhc-------------cccce
Confidence 47899999999999998 2 2788999999998 899999999999999999888888773 58899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce-----eEe------eccCCCCCCccceeecccceeEEEeeeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL-----NIS------RSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 149 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (250)
++++.+| +++.+++|+.|.+|++||..--. ... .........+.++.+||||++++ ++..|.
T Consensus 458 Wsi~~~p------D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La-VsLLdn 530 (888)
T KOG0306|consen 458 WSISLSP------DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA-VSLLDN 530 (888)
T ss_pred eeeeecC------CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE-EEeccC
Confidence 9999999 99999999999999999975311 111 01112236799999999999999 777666
Q ss_pred cc----CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649 150 SG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 225 (250)
Q Consensus 150 ~~----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (250)
.. ...++..-.+-||+-+|.|+..+ |++++++|||.|+.|++|-+.-| .+...+.+|...|.++
T Consensus 531 TVkVyflDtlKFflsLYGHkLPV~smDIS---~DSklivTgSADKnVKiWGLdFG---------DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 531 TVKVYFLDTLKFFLSLYGHKLPVLSMDIS---PDSKLIVTGSADKNVKIWGLDFG---------DCHKSFFAHDDSVMSV 598 (888)
T ss_pred eEEEEEecceeeeeeecccccceeEEecc---CCcCeEEeccCCCceEEeccccc---------hhhhhhhcccCceeEE
Confidence 54 34555666788999999999999 89999999999999999999998 6667889999999999
Q ss_pred EecCCCCCeEEEeeCCceEEEEe
Q 025649 226 CTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 226 ~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
.|.| +...|.++|.|+.|+-||
T Consensus 599 ~F~P-~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 599 QFLP-KTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred EEcc-cceeEEEecCcceEEeec
Confidence 9998 677899999999999997
No 62
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=8e-28 Score=186.06 Aligned_cols=219 Identities=19% Similarity=0.236 Sum_probs=183.4
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-----CCCccceecCCCCCCCCCCcccC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-----GRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
+.++|+.+..++.+++ +|.+.|..++.+||+. .+++||.|.+|++||..- |...+.+... +....--
T Consensus 436 l~vfdlaS~~l~Eti~-AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~------~~rtLel 507 (888)
T KOG0306|consen 436 LQVFDLASASLVETIR-AHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK------HTRTLEL 507 (888)
T ss_pred eEEEEeehhhhhhhhh-ccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeec------cceEEec
Confidence 5789999999999999 9999999999999999 799999999999999752 2211112211 1111124
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccC
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGG 152 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 152 (250)
++.|.|+.+|| |+++|+++--|+++++|-+.+-+....+..+ .-++.|+.++||++.++ .++.|. |..
T Consensus 508 ~ddvL~v~~Sp------dgk~LaVsLLdnTVkVyflDtlKFflsLYGH-kLPV~smDIS~DSkliv-TgSADKnVKiWGL 579 (888)
T KOG0306|consen 508 EDDVLCVSVSP------DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH-KLPVLSMDISPDSKLIV-TGSADKNVKIWGL 579 (888)
T ss_pred cccEEEEEEcC------CCcEEEEEeccCeEEEEEecceeeeeeeccc-ccceeEEeccCCcCeEE-eccCCCceEEecc
Confidence 57899999999 9999999999999999999987766665555 48999999999999999 444443 344
Q ss_pred eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649 153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
.-+.|-+.+-+|...|.++.|. |...++.+++.|+.|+-||-... +.+..+.+|...|++++.+| +|
T Consensus 580 dFGDCHKS~fAHdDSvm~V~F~---P~~~~FFt~gKD~kvKqWDg~kF---------e~iq~L~~H~~ev~cLav~~-~G 646 (888)
T KOG0306|consen 580 DFGDCHKSFFAHDDSVMSVQFL---PKTHLFFTCGKDGKVKQWDGEKF---------EEIQKLDGHHSEVWCLAVSP-NG 646 (888)
T ss_pred ccchhhhhhhcccCceeEEEEc---ccceeEEEecCcceEEeechhhh---------hhheeeccchheeeeeEEcC-CC
Confidence 5666778899999999999999 78889999999999999999987 77788999999999999998 89
Q ss_pred CeEEEeeCCceEEEEeC
Q 025649 233 ENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 233 ~~l~s~~~d~~i~vw~~ 249 (250)
.+++++|.|.+|++|..
T Consensus 647 ~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 647 SFVVSSSHDKSIRLWER 663 (888)
T ss_pred CeEEeccCCceeEeeec
Confidence 99999999999999974
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=5.9e-27 Score=195.90 Aligned_cols=218 Identities=17% Similarity=0.172 Sum_probs=166.6
Q ss_pred CcEEEEcccc----e----eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCC
Q 025649 1 MWQIIDIRQH----C----LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAG 72 (250)
Q Consensus 1 ti~iwd~~~~----~----~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 72 (250)
+|+|||+.+. . ....+. +...|.+++|+|....+|++++.||+|++||+.+++.+..+. +
T Consensus 506 ~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~--------- 573 (793)
T PLN00181 506 KIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-E--------- 573 (793)
T ss_pred EEEEEECCcccccccccccceEEec--ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-C---------
Confidence 4899997532 1 122333 456899999998643389999999999999999888776665 3
Q ss_pred cccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeec-ccceeEEEeeeeeec-
Q 025649 73 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS-KVNIRDAEMEILDQS- 150 (250)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 150 (250)
|...|++++|+| .++.+|++|+.|+.|++||++++.....+... ..+.++.|+ ++|.+++ ++..+..
T Consensus 574 ---H~~~V~~l~~~p-----~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g~~la-tgs~dg~I 642 (793)
T PLN00181 574 ---HEKRVWSIDYSS-----ADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESGRSLA-FGSADHKV 642 (793)
T ss_pred ---CCCCEEEEEEcC-----CCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCCCEEE-EEeCCCeE
Confidence 578899999996 47889999999999999999988777666543 568888885 4677777 3433322
Q ss_pred ---cCeee-eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649 151 ---GGKRL-HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 226 (250)
Q Consensus 151 ---~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 226 (250)
+.... ..+..+.+|...|.++.|. ++.+|++++.|++|++||++...... ....+..+.+|...+..++
T Consensus 643 ~iwD~~~~~~~~~~~~~h~~~V~~v~f~----~~~~lvs~s~D~~ikiWd~~~~~~~~---~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 643 YYYDLRNPKLPLCTMIGHSKTVSYVRFV----DSSTLVSSSTDNTLKLWDLSMSISGI---NETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred EEEECCCCCccceEecCCCCCEEEEEEe----CCCEEEEEECCCEEEEEeCCCCcccc---CCcceEEEcCCCCCeeEEE
Confidence 22221 2345677899999999997 46799999999999999998532100 0135567789999999999
Q ss_pred ecCCCCCeEEEeeCCceEEEEeC
Q 025649 227 TTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 227 ~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
|+| ++.+|++|+.|+.|++|+.
T Consensus 716 ~s~-~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 716 LSV-SDGYIATGSETNEVFVYHK 737 (793)
T ss_pred EcC-CCCEEEEEeCCCEEEEEEC
Confidence 998 7889999999999999985
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.5e-27 Score=171.19 Aligned_cols=221 Identities=17% Similarity=0.184 Sum_probs=167.7
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCC--eEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP--WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
++++||. .|+.+..+. ||.++|.+++|.-..+ ..|++++.|.++++|.++.++........ ...|..
T Consensus 126 ~~riWd~-~Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~---------~~GHk~ 194 (423)
T KOG0313|consen 126 TSRIWDL-KGKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKV---------CRGHKR 194 (423)
T ss_pred eeEEEec-CCceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhH---------hccccc
Confidence 5799997 589999999 9999999888854333 25999999999999999877643322100 013889
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce------------------------eEeeccCCCCCCccceee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL------------------------NISRSKSTTKPLKGSQST 134 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~------------------------~~~~~~~~~~~~~~~~~~ 134 (250)
.|.++...+ ++..+++|+.|..|.+|+..+.. .+......+...+.++.|
T Consensus 195 ~V~sVsv~~------sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 195 SVDSVSVDS------SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred ceeEEEecC------CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 999999998 99999999999999999933210 011112234577888899
Q ss_pred cccceeEEEeeeeeecc----CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccc
Q 025649 135 SKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND 210 (250)
Q Consensus 135 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 210 (250)
++ ...++ .++||.+. ........++.+ .....|+.++ |..++|++|+.|..|++||.+++... -
T Consensus 269 ~d-~~v~y-S~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~---~~~~Ll~~gssdr~irl~DPR~~~gs------~ 336 (423)
T KOG0313|consen 269 SD-ATVIY-SVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYS---PLSKLLASGSSDRHIRLWDPRTGDGS------V 336 (423)
T ss_pred cC-CCceE-eecccceEEEEEeecccceeeeec-CcceeEeecc---cccceeeecCCCCceeecCCCCCCCc------e
Confidence 88 33333 45555443 233334444443 4568999999 78899999999999999999997543 4
Q ss_pred eeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 211 LLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 211 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
....+.+|.+.|.++.|+|.+...|++|+.|+++++||++
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 5567889999999999999888899999999999999985
No 65
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-27 Score=180.95 Aligned_cols=211 Identities=17% Similarity=0.164 Sum_probs=176.1
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCce
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
|||++..|++.+..|. +|.+-|.+++.+|..+ +++|+|+|-+|++||.+.+ .+.+++. + |...|
T Consensus 79 IrVfnynt~ekV~~Fe-AH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfe-G------------H~HyV 143 (794)
T KOG0276|consen 79 IRVFNYNTGEKVKTFE-AHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFE-G------------HEHYV 143 (794)
T ss_pred EEEEecccceeeEEee-ccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEc-C------------cceEE
Confidence 8999999999999999 9999999999999999 9999999999999999865 5666666 4 68899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc--eeEEE---eeeeeeccCeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN--IRDAE---MEILDQSGGKRL 155 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~ 155 (250)
.+++|+| .|.+.+++++-|++|++|.+.+.....++..+ ...+.++.+-+-| .++++ ......|+-++.
T Consensus 144 Mqv~fnP-----kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 144 MQVAFNP-----KDPNTFASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred EEEEecC-----CCccceeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence 9999999 78999999999999999999998888888755 5889999998765 56663 122344556777
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
.|++++.||...|..+.|+ |.-.+++|||+||+++||+..+. .+...+.-.-+.+++++..+ .+..+
T Consensus 218 ~CV~TLeGHt~Nvs~v~fh---p~lpiiisgsEDGTvriWhs~Ty---------~lE~tLn~gleRvW~I~~~k-~~~~i 284 (794)
T KOG0276|consen 218 SCVQTLEGHTNNVSFVFFH---PELPIIISGSEDGTVRIWNSKTY---------KLEKTLNYGLERVWCIAAHK-GDGKI 284 (794)
T ss_pred HHHHHhhcccccceEEEec---CCCcEEEEecCCccEEEecCcce---------ehhhhhhcCCceEEEEeecC-CCCeE
Confidence 8999999999999999999 78889999999999999999986 33333344456799998887 44458
Q ss_pred EEeeCCceEEE
Q 025649 236 VVCDTSKVVKV 246 (250)
Q Consensus 236 ~s~~~d~~i~v 246 (250)
+.|..+|.|.+
T Consensus 285 ~vG~Deg~i~v 295 (794)
T KOG0276|consen 285 AVGFDEGSVTV 295 (794)
T ss_pred EEeccCCcEEE
Confidence 88888887654
No 66
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=9.3e-27 Score=171.34 Aligned_cols=213 Identities=17% Similarity=0.168 Sum_probs=176.5
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
|+.|||..+++..+.+. -|..+-.++.|-.+.. +++++.|+.|+++.+...+++.++. + |...|
T Consensus 299 ttilwd~~~g~~~q~f~-~~s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~~P~~t~~-G------------H~g~V 362 (524)
T KOG0273|consen 299 TTILWDAHTGTVKQQFE-FHSAPALDVDWQSNDE--FATSSTDGCIHVCKVGEDRPVKTFI-G------------HHGEV 362 (524)
T ss_pred cEEEEeccCceEEEeee-eccCCccceEEecCce--EeecCCCceEEEEEecCCCcceeee-c------------ccCce
Confidence 57899999999999999 8888877899988775 9999999999999999888888887 4 68899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccce---------eEEE---eeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI---------RDAE---MEILD 148 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~ 148 (250)
.++.|+| .+.+|++++.|+++++|..........+..+. ..|..+.|+|+|. .+++ .+...
T Consensus 363 ~alk~n~------tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs-kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~ 435 (524)
T KOG0273|consen 363 NALKWNP------TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS-KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVK 435 (524)
T ss_pred EEEEECC------CCceEEEecCCCeeEeeecCCCcchhhhhhhc-cceeeEeecCCCCccCCCcCCceEEEeecCCeEE
Confidence 9999999 99999999999999999988766666555553 5677788887653 3332 12233
Q ss_pred eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649 149 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 228 (250)
Q Consensus 149 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 228 (250)
.++.....+++.|..|..+|++++|+ |+|+|+|+|+.||.|.+|+.+++ ++.+.+ .-.+.|..++|+
T Consensus 436 lwdv~~gv~i~~f~kH~~pVysvafS---~~g~ylAsGs~dg~V~iws~~~~---------~l~~s~-~~~~~Ifel~Wn 502 (524)
T KOG0273|consen 436 LWDVESGVPIHTLMKHQEPVYSVAFS---PNGRYLASGSLDGCVHIWSTKTG---------KLVKSY-QGTGGIFELCWN 502 (524)
T ss_pred EEEccCCceeEeeccCCCceEEEEec---CCCcEEEecCCCCeeEeccccch---------heeEee-cCCCeEEEEEEc
Confidence 34456677888999999999999999 89999999999999999999997 554443 444569999999
Q ss_pred CCCCCeEEEeeCCceEEEEeCC
Q 025649 229 PTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 229 ~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
. +|..|..+-.|+.+.+-|++
T Consensus 503 ~-~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 503 A-AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred C-CCCEEEEEecCCCceEEEec
Confidence 7 77888888889999999875
No 67
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.2e-28 Score=187.49 Aligned_cols=180 Identities=18% Similarity=0.360 Sum_probs=153.1
Q ss_pred cEEEEccc---ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQ---HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~---~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|.+||+.. .+++..|. .|+..++++.|++..+++|++||.||+|++||++..+...++.. ..+
T Consensus 112 i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-------------nSE 177 (839)
T KOG0269|consen 112 ISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-------------NSE 177 (839)
T ss_pred EEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-------------cch
Confidence 78999986 67778888 99999999999999988999999999999999998887777762 367
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD 158 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (250)
.|..+.|+| ..+.+++++...|.+++||++.. .++.
T Consensus 178 SiRDV~fsp-----~~~~~F~s~~dsG~lqlWDlRqp---------------------------------------~r~~ 213 (839)
T KOG0269|consen 178 SIRDVKFSP-----GYGNKFASIHDSGYLQLWDLRQP---------------------------------------DRCE 213 (839)
T ss_pred hhhceeecc-----CCCceEEEecCCceEEEeeccCc---------------------------------------hhHH
Confidence 899999999 57899999999999999999842 2345
Q ss_pred ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649 159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 238 (250)
Q Consensus 159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 238 (250)
.++.+|.++|.|+.|+ |++.+||||+.|+.|+|||+.+... ..........+|..+.|-|....+|+++
T Consensus 214 ~k~~AH~GpV~c~nwh---Pnr~~lATGGRDK~vkiWd~t~~~~--------~~~~tInTiapv~rVkWRP~~~~hLAtc 282 (839)
T KOG0269|consen 214 KKLTAHNGPVLCLNWH---PNREWLATGGRDKMVKIWDMTDSRA--------KPKHTINTIAPVGRVKWRPARSYHLATC 282 (839)
T ss_pred HHhhcccCceEEEeec---CCCceeeecCCCccEEEEeccCCCc--------cceeEEeecceeeeeeeccCccchhhhh
Confidence 6788999999999999 8999999999999999999997521 1123344556899999999777778887
Q ss_pred e--CCceEEEEeCC
Q 025649 239 D--TSKVVKVYSIS 250 (250)
Q Consensus 239 ~--~d~~i~vw~~~ 250 (250)
+ .|-.|+|||++
T Consensus 283 smv~dtsV~VWDvr 296 (839)
T KOG0269|consen 283 SMVVDTSVHVWDVR 296 (839)
T ss_pred hccccceEEEEeec
Confidence 6 58899999985
No 68
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.3e-27 Score=166.60 Aligned_cols=215 Identities=17% Similarity=0.139 Sum_probs=158.5
Q ss_pred eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC---CCccceecCCCCCC-C-CCCcccCCCceeEEecCCC
Q 025649 14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG---RPNKIVNFGLPENN-G-NAGQCYNPAFVHAIAIPDA 88 (250)
Q Consensus 14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~ 88 (250)
..+. .|..++.+-+|+|||. ++++|+.|..|+|.|++.. .....+..+.+++. + ...+.-|.+.|+.+.|+|
T Consensus 106 ~ylt-~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP- 182 (430)
T KOG0640|consen 106 KYLT-SHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP- 182 (430)
T ss_pred EEEe-ecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-
Confidence 4566 8999999999999999 9999999999999998731 11122222222222 1 134445888999999999
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc-CCCCCCccceeecccceeEEEeeeeee----ccCeeeeee---cc
Q 025649 89 DMLDKTNKICVVAKGDGVVDVINIESELNISRSK-STTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLD---YS 160 (250)
Q Consensus 89 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~ 160 (250)
...+|++|+.|++|++||........-++ ......+.+++|+|.|.+++ +|.... .+.+..++. ..
T Consensus 183 -----re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 183 -----RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred -----hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCc
Confidence 89999999999999999997633222111 12237899999999999998 443221 122333322 23
Q ss_pred ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee-eccCC-ceeEEEecCCCCCeEEEe
Q 025649 161 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-INLNK-KVNWLCTTPTESENLVVC 238 (250)
Q Consensus 161 ~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~~~~~~~~l~s~ 238 (250)
-..|.+.|+++.|+ +.|++.++||.||.|++||--+..++ ..+ ..|.+ .|.+..|. .+++++++.
T Consensus 257 d~qht~ai~~V~Ys---~t~~lYvTaSkDG~IklwDGVS~rCv---------~t~~~AH~gsevcSa~Ft-kn~kyiLsS 323 (430)
T KOG0640|consen 257 DDQHTGAITQVRYS---STGSLYVTASKDGAIKLWDGVSNRCV---------RTIGNAHGGSEVCSAVFT-KNGKYILSS 323 (430)
T ss_pred ccccccceeEEEec---CCccEEEEeccCCcEEeeccccHHHH---------HHHHhhcCCceeeeEEEc-cCCeEEeec
Confidence 35799999999999 89999999999999999998887443 333 45665 46666666 599999999
Q ss_pred eCCceEEEEeCC
Q 025649 239 DTSKVVKVYSIS 250 (250)
Q Consensus 239 ~~d~~i~vw~~~ 250 (250)
+.|..+++|.+.
T Consensus 324 G~DS~vkLWEi~ 335 (430)
T KOG0640|consen 324 GKDSTVKLWEIS 335 (430)
T ss_pred CCcceeeeeeec
Confidence 999999999873
No 69
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=2.2e-26 Score=171.60 Aligned_cols=219 Identities=16% Similarity=0.177 Sum_probs=166.6
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|.+-+++.......+. .|..+++-..|+|.|. ++++|...|.|||||....+.+..-++. .-..+|.
T Consensus 41 v~ir~i~~~~~~~iYt-EH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~-----------v~aG~I~ 107 (603)
T KOG0318|consen 41 VIIRNIDNPASVDIYT-EHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ-----------VLAGPIK 107 (603)
T ss_pred EEEEECCCccceeeec-cccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-----------ecccccc
Confidence 3455666666667777 9999999999999999 9999999999999998654322221111 1246799
Q ss_pred EEecCCCcccCCCCCEEEEEeC--CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----cCeee
Q 025649 82 AIAIPDADMLDKTNKICVVAKG--DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRL 155 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 155 (250)
.++|++ ++++|++.++ ++..+++-.+++....++..+ ...+.++.|-|...+-+..+..|.. .+.++
T Consensus 108 Di~Wd~------ds~RI~avGEGrerfg~~F~~DSG~SvGei~Gh-Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF 180 (603)
T KOG0318|consen 108 DISWDF------DSKRIAAVGEGRERFGHVFLWDSGNSVGEITGH-SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF 180 (603)
T ss_pred cceeCC------CCcEEEEEecCccceeEEEEecCCCccceeecc-ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe
Confidence 999998 8888877653 444445544555555555444 3678888888877665545554444 46677
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
+...++..|..-|.|+.|+ |||.++++++.||+|.+||=.+++.+. .+....+|.+.|++++|+| |++.|
T Consensus 181 KFk~s~r~HskFV~~VRys---PDG~~Fat~gsDgki~iyDGktge~vg------~l~~~~aHkGsIfalsWsP-Ds~~~ 250 (603)
T KOG0318|consen 181 KFKSSFREHSKFVNCVRYS---PDGSRFATAGSDGKIYIYDGKTGEKVG------ELEDSDAHKGSIFALSWSP-DSTQF 250 (603)
T ss_pred eeeecccccccceeeEEEC---CCCCeEEEecCCccEEEEcCCCccEEE------EecCCCCccccEEEEEECC-CCceE
Confidence 7778889999999999999 899999999999999999999995442 2222348999999999998 99999
Q ss_pred EEeeCCceEEEEeCC
Q 025649 236 VVCDTSKVVKVYSIS 250 (250)
Q Consensus 236 ~s~~~d~~i~vw~~~ 250 (250)
+|++.|.+++|||++
T Consensus 251 ~T~SaDkt~KIWdVs 265 (603)
T KOG0318|consen 251 LTVSADKTIKIWDVS 265 (603)
T ss_pred EEecCCceEEEEEee
Confidence 999999999999974
No 70
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=6.9e-27 Score=171.07 Aligned_cols=213 Identities=17% Similarity=0.194 Sum_probs=167.5
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
.|.+.|+.+.+.|..+.++++.+..+.|.|||..+-....... + ...+...+..|.+.-+++.|++ ...-.|
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-~--~~~Pdl~L~gH~~eg~glsWn~-----~~~g~L 193 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-G--ECRPDLRLKGHEKEGYGLSWNR-----QQEGTL 193 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-c--cCCCceEEEeeccccccccccc-----ccceeE
Confidence 4999999999999998788899999999999987543222211 0 1122334555777678899998 467789
Q ss_pred EEEeCCCeEEEEeCCCcee------EeeccCCCCCCccceeecccceeEEE-------eeeeeeccCeeeeeeccccCcc
Q 025649 99 VVAKGDGVVDVINIESELN------ISRSKSTTKPLKGSQSTSKVNIRDAE-------MEILDQSGGKRLHLDYSVGGHT 165 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~h~ 165 (250)
++++.|++|++||+..... .......+...+..++|++-...++. ...||.+.. ..++.+...+|.
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~ 272 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHS 272 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccC
Confidence 9999999999999986432 23344455688999999986655542 234555542 556667788999
Q ss_pred ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649 166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 245 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 245 (250)
+.|.|++|+| .++..|||||.|++|++||+|+.. ..+..+.+|...|..+.|+|.....|++++.|+.+.
T Consensus 273 ~~vn~~~fnp--~~~~ilAT~S~D~tV~LwDlRnL~--------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 273 AEVNCVAFNP--FNEFILATGSADKTVALWDLRNLN--------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN 342 (422)
T ss_pred CceeEEEeCC--CCCceEEeccCCCcEEEeechhcc--------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence 9999999997 457899999999999999999975 567889999999999999998888999999999999
Q ss_pred EEeCC
Q 025649 246 VYSIS 250 (250)
Q Consensus 246 vw~~~ 250 (250)
|||+.
T Consensus 343 vWDls 347 (422)
T KOG0264|consen 343 VWDLS 347 (422)
T ss_pred EEecc
Confidence 99974
No 71
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.9e-27 Score=169.88 Aligned_cols=220 Identities=12% Similarity=0.142 Sum_probs=165.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCC-----------------
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL----------------- 64 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~----------------- 64 (250)
|+|||+.+.+++.+|+ +|.+.|..|++.. . .+++++.|.+|+.|.+.- .+++++....
T Consensus 91 VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~-~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTc 165 (433)
T KOG0268|consen 91 VKIWNLSQRECIRTFK-AHEGLVRGICVTQ--T-SFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATC 165 (433)
T ss_pred EEEEehhhhhhhheee-cccCceeeEEecc--c-ceEEecCCcceeeeeccC-Ccceeeecccccccccccccccccccc
Confidence 7999999999999999 9999999999998 3 589999999999998642 2222221000
Q ss_pred ---------CCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeec
Q 025649 65 ---------PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 135 (250)
Q Consensus 65 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 135 (250)
.-..+.....+..+.|.++.|+| -...+|++++.|+.|.+||++.+..+...... .....++|+
T Consensus 166 Ge~i~IWD~~R~~Pv~smswG~Dti~svkfNp-----vETsILas~~sDrsIvLyD~R~~~Pl~KVi~~--mRTN~Iswn 238 (433)
T KOG0268|consen 166 GEQIDIWDEQRDNPVSSMSWGADSISSVKFNP-----VETSILASCASDRSIVLYDLRQASPLKKVILT--MRTNTICWN 238 (433)
T ss_pred CceeeecccccCCccceeecCCCceeEEecCC-----CcchheeeeccCCceEEEecccCCccceeeee--ccccceecC
Confidence 00001122333456788888888 46778899999999999999998877665544 466789999
Q ss_pred ccceeEEEeeeeeecc-----CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccc
Q 025649 136 KVNIRDAEMEILDQSG-----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND 210 (250)
Q Consensus 136 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 210 (250)
|++ +.++++..|... ..-.+++..+.+|...|..+.|| |.|+-+++||.|.+|+||..+.+...
T Consensus 239 Pea-fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs---ptG~EfvsgsyDksIRIf~~~~~~SR------- 307 (433)
T KOG0268|consen 239 PEA-FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS---PTGQEFVSGSYDKSIRIFPVNHGHSR------- 307 (433)
T ss_pred ccc-cceeeccccccceehhhhhhcccchhhcccceeEEEeccC---CCcchhccccccceEEEeecCCCcch-------
Confidence 944 444455555442 22334567788999999999999 89999999999999999999887432
Q ss_pred eeeeeeccC---CceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 211 LLIKNINLN---KKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 211 ~~~~~~~~~---~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
-.-|+ +.|.++.|+. |.+++++||.|+.|++|.-
T Consensus 308 ----diYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 308 ----DIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred ----hhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeec
Confidence 11232 3589999996 9999999999999999963
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.1e-26 Score=168.02 Aligned_cols=214 Identities=18% Similarity=0.222 Sum_probs=176.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
++.++|..+++.+..|+ ||...|+.+.|+|+.. .+++++.|-.|++|............ .|..+|
T Consensus 242 ~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s~~~~~~-------------~h~~~V 306 (506)
T KOG0289|consen 242 TAVLFDKPSNQILATLK-GHTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSSEPTSSR-------------PHEEPV 306 (506)
T ss_pred ceEEEecchhhhhhhcc-CcceEEEEEEeccchh-heeecCCcceEEeeccccccCccccc-------------cccccc
Confidence 46789999999999999 9999999999999998 89999999999999987665444433 257899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC-CCCCccceeecccceeEEE---eeeeeeccCeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLH 156 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 156 (250)
+.+..+| .|.||++++.|++..+.|++++..+...... ..-.+.+.+|+|||..+++ .+..+.++.....
T Consensus 307 ~~ls~h~------tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~ 380 (506)
T KOG0289|consen 307 TGLSLHP------TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT 380 (506)
T ss_pred eeeeecc------CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence 9999998 9999999999999999999999887665543 3466899999999999985 3344455555555
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee-eccCCceeEEEecCCCCCeE
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-INLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l 235 (250)
.+..|.+|.++|..++|+ .||.+|++++.|+.|++||++..... ..+ .....++.++.|.+ .|++|
T Consensus 381 ~~a~Fpght~~vk~i~Fs---ENGY~Lat~add~~V~lwDLRKl~n~---------kt~~l~~~~~v~s~~fD~-SGt~L 447 (506)
T KOG0289|consen 381 NVAKFPGHTGPVKAISFS---ENGYWLATAADDGSVKLWDLRKLKNF---------KTIQLDEKKEVNSLSFDQ-SGTYL 447 (506)
T ss_pred ccccCCCCCCceeEEEec---cCceEEEEEecCCeEEEEEehhhccc---------ceeeccccccceeEEEcC-CCCeE
Confidence 678999999999999999 99999999999999999999997432 222 23334799999986 89999
Q ss_pred EEeeCCceEEEEe
Q 025649 236 VVCDTSKVVKVYS 248 (250)
Q Consensus 236 ~s~~~d~~i~vw~ 248 (250)
+.++.|=.|++++
T Consensus 448 ~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 448 GIAGSDLQVYICK 460 (506)
T ss_pred EeecceeEEEEEe
Confidence 9998776666654
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1e-26 Score=186.25 Aligned_cols=212 Identities=17% Similarity=0.213 Sum_probs=166.4
Q ss_pred cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649 9 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA 88 (250)
Q Consensus 9 ~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 88 (250)
..+....|. +|.+.|..++|+|++. +|++++.|++|.+||..+.+.+..++ + |...|..+.|.|
T Consensus 118 ~wk~~~~l~-~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~-~------------H~s~VKGvs~DP- 181 (942)
T KOG0973|consen 118 SWKVVSILR-GHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLR-G------------HQSLVKGVSWDP- 181 (942)
T ss_pred eeeEEEEEe-cCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeee-c------------ccccccceEECC-
Confidence 345778899 9999999999999999 99999999999999999998888887 3 578999999999
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC-----CCCCccceeecccceeEEEeeeeeec-------cCeeee
Q 025649 89 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-----TKPLKGSQSTSKVNIRDAEMEILDQS-------GGKRLH 156 (250)
Q Consensus 89 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 156 (250)
-|++|++-+.|++|++|++.+......+..+ .......+.|||||.++++....+.. .+..-+
T Consensus 182 -----~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk 256 (942)
T KOG0973|consen 182 -----IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK 256 (942)
T ss_pred -----ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCce
Confidence 9999999999999999998775444443332 23567889999999999963332221 223333
Q ss_pred eeccccCccccEEEEEeecC--C-CC-------Cc----EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCce
Q 025649 157 LDYSVGGHTAAASCVAFSMF--G-ER-------GK----YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 222 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~--~-~~-------~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (250)
.-..|-||.+++.+++|+|. - +. .+ .+|+||.|++|-||...... +++....-....|
T Consensus 257 ~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R--------Pl~vi~~lf~~SI 328 (942)
T KOG0973|consen 257 VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR--------PLFVIHNLFNKSI 328 (942)
T ss_pred eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC--------chhhhhhhhcCce
Confidence 44578899999999999971 0 01 11 57889999999999997652 2222233345689
Q ss_pred eEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 223 NWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 223 ~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
..++|+| ||..|+.+|.||+|.+..++
T Consensus 329 ~DmsWsp-dG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 329 VDMSWSP-DGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred eeeeEcC-CCCeEEEEecCCeEEEEEcc
Confidence 9999998 99999999999999998753
No 74
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.2e-26 Score=178.44 Aligned_cols=213 Identities=16% Similarity=0.190 Sum_probs=169.1
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
.|++|+.++.+++.+|. ||-+-|..+.|++.-+ -++|+|+|.+|+||+..+++++..+. + |.-.|
T Consensus 74 kIkVWnYk~rrclftL~-GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavlt-G------------HnHYV 138 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLL-GHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLT-G------------HNHYV 138 (1202)
T ss_pred EEEEEecccceehhhhc-cccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEe-c------------CceEE
Confidence 48999999999999999 9999999999999999 59999999999999999999999988 4 68899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee----------------------------EeeccCCCCCCccce
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN----------------------------ISRSKSTTKPLKGSQ 132 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----------------------------~~~~~~~~~~~~~~~ 132 (250)
.|..|+| ....++++|-|.+||+||+..-+. +..+...++..+.-+
T Consensus 139 McAqFhp------tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa 212 (1202)
T KOG0292|consen 139 MCAQFHP------TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA 212 (1202)
T ss_pred EeeccCC------ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence 9999999 899999999999999999864211 111223345678888
Q ss_pred eecccceeEEEeeeeeecc------CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc
Q 025649 133 STSKVNIRDAEMEILDQSG------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS 206 (250)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 206 (250)
+|+|.-..++ +|..|... ....-.+.+..+|.+.|.++-|+ |..+++++.|+|++|++||+...
T Consensus 213 AfhpTlpliV-SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh---p~q~lIlSnsEDksirVwDm~kR------ 282 (1202)
T KOG0292|consen 213 AFHPTLPLIV-SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH---PHQDLILSNSEDKSIRVWDMTKR------ 282 (1202)
T ss_pred EecCCcceEE-ecCCcceeeEEEeccccceeehhhhcccCCcceEEec---CccceeEecCCCccEEEEecccc------
Confidence 9999888888 33332221 11112345778999999999999 88899999999999999999997
Q ss_pred cccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 207 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
..+..+.-..+.-+.++.+| ..++++ ++.|+-+.||.+
T Consensus 283 ---t~v~tfrrendRFW~laahP-~lNLfA-AgHDsGm~VFkl 320 (1202)
T KOG0292|consen 283 ---TSVQTFRRENDRFWILAAHP-ELNLFA-AGHDSGMIVFKL 320 (1202)
T ss_pred ---cceeeeeccCCeEEEEEecC-Ccceee-eecCCceEEEEE
Confidence 44455555666778888887 565444 445655667654
No 75
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.5e-27 Score=170.93 Aligned_cols=209 Identities=18% Similarity=0.191 Sum_probs=163.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
++++|++...+...+|. ||++.|+++.|..... .+++|+.|.+|++||+....+.+++... ..+
T Consensus 242 ~~r~Wnvd~~r~~~TLs-GHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~~--------------S~c 305 (459)
T KOG0288|consen 242 NLRLWNVDSLRLRHTLS-GHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLPG--------------SQC 305 (459)
T ss_pred ceeeeeccchhhhhhhc-ccccceeeehhhcccc-ceeeccccchhhhhhhhhhheecccccc--------------ccc
Confidence 36899999999999999 9999999999998876 5999999999999999998888777644 344
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec---cCeeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS---GGKRLHL 157 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 157 (250)
..+..+ ...+++|-.|+.|++||.++.......... +.+.++..+++|..+.+..--|.. +....+.
T Consensus 306 nDI~~~--------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI 375 (459)
T KOG0288|consen 306 NDIVCS--------ISDVISGHFDKKVRFWDIRSADKTRSVPLG--GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI 375 (459)
T ss_pred cceEec--------ceeeeecccccceEEEeccCCceeeEeecC--cceeeEeeccCCeEEeeecCCCceeeeecccccE
Confidence 444443 456788999999999999998887777665 699999999999999854322221 2222222
Q ss_pred eccccC----ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec-cCC-ceeEEEecCCC
Q 025649 158 DYSVGG----HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNK-KVNWLCTTPTE 231 (250)
Q Consensus 158 ~~~~~~----h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~~ 231 (250)
...+.+ .....+.+.|| |++.|+++||.||.|+||++.+++. ...... +.. .|++++|+| .
T Consensus 376 ~~~~sA~g~k~asDwtrvvfS---pd~~YvaAGS~dgsv~iW~v~tgKl---------E~~l~~s~s~~aI~s~~W~~-s 442 (459)
T KOG0288|consen 376 RQTFSAEGFKCASDWTRVVFS---PDGSYVAAGSADGSVYIWSVFTGKL---------EKVLSLSTSNAAITSLSWNP-S 442 (459)
T ss_pred EEEeeccccccccccceeEEC---CCCceeeeccCCCcEEEEEccCceE---------EEEeccCCCCcceEEEEEcC-C
Confidence 222221 12237889999 8999999999999999999999843 333333 222 699999998 8
Q ss_pred CCeEEEeeCCceEEEEe
Q 025649 232 SENLVVCDTSKVVKVYS 248 (250)
Q Consensus 232 ~~~l~s~~~d~~i~vw~ 248 (250)
|..+++++.++.+.+|.
T Consensus 443 G~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 443 GSGLLSADKQKAVTLWT 459 (459)
T ss_pred CchhhcccCCcceEecC
Confidence 89999999999999994
No 76
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.2e-26 Score=161.31 Aligned_cols=219 Identities=14% Similarity=0.179 Sum_probs=148.7
Q ss_pred eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc--cce----ecCCC-------CCC------------
Q 025649 14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN--KIV----NFGLP-------ENN------------ 68 (250)
Q Consensus 14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~--~~~----~~~~~-------~~~------------ 68 (250)
..|+ +|.+.|++++|+.||+ +|+|++.|++|++|+++..... +.+ ..+.+ +..
T Consensus 80 ~~LK-gH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLK-GHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhh-ccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 4678 9999999999999999 8999999999999999753211 111 11100 000
Q ss_pred -----------CC----------CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCC
Q 025649 69 -----------GN----------AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 127 (250)
Q Consensus 69 -----------~~----------~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 127 (250)
.. .-...|...+..+.+.. ++++|++++.|..|.+|+++ |+.+..+.... .
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~------~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq-~ 229 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG------NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ-S 229 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecC------CceEEEEecCCCcEEEEecC-Cceeeeecccc-c
Confidence 00 00001112223333332 67899999999999999999 77777665543 5
Q ss_pred CccceeecccceeEEEee------eeeeccC-----eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEe
Q 025649 128 LKGSQSTSKVNIRDAEME------ILDQSGG-----KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 196 (250)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd 196 (250)
.....+.||+|++++..+ .|...-. +....+..++||...|...+|+ ++.+.++|.|.||+++|||
T Consensus 230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs---n~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS---NSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC---CCcceeEEEecCCcEEEee
Confidence 566788999999999533 2332211 2333456789999999999999 8999999999999999999
Q ss_pred cCCCcce----e----------------------------------------cccccceeeeeeccCCceeEEEecCCCC
Q 025649 197 CSRFQGV----Q----------------------------------------TSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 197 ~~~~~~~----~----------------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
..-.... . ...+.........|+..|.+++|++ +|
T Consensus 307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g 385 (420)
T KOG2096|consen 307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DG 385 (420)
T ss_pred ccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CC
Confidence 7532111 0 0000011112235788899999998 99
Q ss_pred CeEEEeeCCceEEEE
Q 025649 233 ENLVVCDTSKVVKVY 247 (250)
Q Consensus 233 ~~l~s~~~d~~i~vw 247 (250)
+++++++ |+.+++.
T Consensus 386 ~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 386 KYIATCG-DRYVRVI 399 (420)
T ss_pred cEEeeec-ceeeeee
Confidence 9999988 7777775
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=4.7e-26 Score=178.78 Aligned_cols=205 Identities=20% Similarity=0.255 Sum_probs=172.9
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
|+++||..+|++...+. +|.+.|.++...+. ++++|+.|.+|++|+++++..+..+. + |...|
T Consensus 272 t~rvWd~~sg~C~~~l~-gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~-~------------h~~~V 334 (537)
T KOG0274|consen 272 TERVWDCSTGECTHSLQ-GHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLR-G------------HTGPV 334 (537)
T ss_pred cEEeEecCCCcEEEEec-CCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEec-c------------ccccE
Confidence 68999999999999999 99999999997765 78999999999999999999988887 2 57899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeee-
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRL- 155 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~- 155 (250)
.++... +.++++|+.|++|++||+.+++.+..+..+ ...+.++.+... ..++ .|..|. ++....
T Consensus 335 ~~v~~~--------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH-~~~V~sl~~~~~-~~~~-Sgs~D~~IkvWdl~~~~ 403 (537)
T KOG0274|consen 335 NCVQLD--------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH-TGRVYSLIVDSE-NRLL-SGSLDTTIKVWDLRTKR 403 (537)
T ss_pred EEEEec--------CCEEEEEecCceEEEEEhhhceeeeeecCC-cceEEEEEecCc-ceEE-eeeeccceEeecCCchh
Confidence 999874 789999999999999999999999988884 588889887776 4554 444443 344555
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec-cCCceeEEEecCCCCCe
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTTPTESEN 234 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 234 (250)
+++..+.+|..-+..+.+. +++|++++.|++|++||...+ +++..+.+ |...|..++.. ...
T Consensus 404 ~c~~tl~~h~~~v~~l~~~-----~~~Lvs~~aD~~Ik~WD~~~~---------~~~~~~~~~~~~~v~~l~~~---~~~ 466 (537)
T KOG0274|consen 404 KCIHTLQGHTSLVSSLLLR-----DNFLVSSSADGTIKLWDAEEG---------ECLRTLEGRHVGGVSALALG---KEE 466 (537)
T ss_pred hhhhhhcCCcccccccccc-----cceeEeccccccEEEeecccC---------ceeeeeccCCcccEEEeecC---cce
Confidence 8899999999998877754 689999999999999999998 55566666 66888888765 246
Q ss_pred EEEeeCCceEEEEeCC
Q 025649 235 LVVCDTSKVVKVYSIS 250 (250)
Q Consensus 235 l~s~~~d~~i~vw~~~ 250 (250)
+++++.||.+++||++
T Consensus 467 il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 467 ILCSSDDGSVKLWDLR 482 (537)
T ss_pred EEEEecCCeeEEEecc
Confidence 8999999999999985
No 78
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1.5e-25 Score=160.23 Aligned_cols=166 Identities=18% Similarity=0.183 Sum_probs=141.8
Q ss_pred eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649 12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML 91 (250)
Q Consensus 12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (250)
.+.+|. .|+..|.+++.+|+.+ +++||+.|..-.+|++.++.....+. + |.+.|.++.|+-
T Consensus 56 S~~tF~-~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~elt-g------------HKDSVt~~~Fsh---- 116 (399)
T KOG0296|consen 56 SLVTFD-KHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGELT-G------------HKDSVTCCSFSH---- 116 (399)
T ss_pred ceeehh-hcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeEec-C------------CCCceEEEEEcc----
Confidence 456788 9999999999999777 89999999999999999999666665 4 789999999997
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc----CeeeeeeccccCcccc
Q 025649 92 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAA 167 (250)
Q Consensus 92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~ 167 (250)
++.+||+|.-+|.|++|+..++.....+.. ....+.-+.|+|.+..++ .|..|+.. .......+.+.||..+
T Consensus 117 --dgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~WHp~a~ill-AG~~DGsvWmw~ip~~~~~kv~~Gh~~~ 192 (399)
T KOG0296|consen 117 --DGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLKWHPRAHILL-AGSTDGSVWMWQIPSQALCKVMSGHNSP 192 (399)
T ss_pred --CceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEEecccccEEE-eecCCCcEEEEECCCcceeeEecCCCCC
Confidence 999999999999999999999887776652 236788899999998888 66555542 2333456788999999
Q ss_pred EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649 168 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV 203 (250)
Q Consensus 168 v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 203 (250)
+++=.|. |+|+.++++..||+|++||+++++..
T Consensus 193 ct~G~f~---pdGKr~~tgy~dgti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 193 CTCGEFI---PDGKRILTGYDDGTIIVWNPKTGQPL 225 (399)
T ss_pred ccccccc---CCCceEEEEecCceEEEEecCCCcee
Confidence 9999999 89999999999999999999998654
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=175.17 Aligned_cols=215 Identities=15% Similarity=0.171 Sum_probs=175.5
Q ss_pred CcEEEEcccce------eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC--CCccceecCCCCCCCCCC
Q 025649 1 MWQIIDIRQHC------LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAG 72 (250)
Q Consensus 1 ti~iwd~~~~~------~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~ 72 (250)
+|++|+..... .+.+++ .|.++|+.+....+++ .|+++|.|-+|++|+...+ -+..++. .
T Consensus 48 ~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~~~c~stir-~--------- 115 (735)
T KOG0308|consen 48 IIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDNTFCMSTIR-T--------- 115 (735)
T ss_pred eEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCcchhHhhhh-c---------
Confidence 47899876322 367788 9999999999999998 7999999999999999876 4555555 2
Q ss_pred cccCCCceeEEec-CCCcccCCCCCEEEEEeCCCeEEEEeCCCcee--Eee--------ccCCCCCCccceeecccceeE
Q 025649 73 QCYNPAFVHAIAI-PDADMLDKTNKICVVAKGDGVVDVINIESELN--ISR--------SKSTTKPLKGSQSTSKVNIRD 141 (250)
Q Consensus 73 ~~~~~~~v~~~~~-~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~ 141 (250)
|.+.|.|+++ .+ +..++|+|+-|+.|.+||++++.. ... ........+.+++.++.|..+
T Consensus 116 ---H~DYVkcla~~ak------~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i 186 (735)
T KOG0308|consen 116 ---HKDYVKCLAYIAK------NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII 186 (735)
T ss_pred ---ccchheeeeeccc------CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence 6899999999 54 888999999999999999997632 221 122345678899999999777
Q ss_pred EEee---eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc
Q 025649 142 AEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 218 (250)
Q Consensus 142 ~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 218 (250)
+..+ ....++.+..+.+..++||...|.++..+ ++|+.++++|.||+|++||+... .++..+..|
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~---dDGt~~ls~sSDgtIrlWdLgqQ---------rCl~T~~vH 254 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVN---DDGTRLLSASSDGTIRLWDLGQQ---------RCLATYIVH 254 (735)
T ss_pred EecCcccceEEeccccccceeeeeccccceEEEEEc---CCCCeEeecCCCceEEeeecccc---------ceeeeEEec
Confidence 7422 23334555566677888999999999999 89999999999999999999997 677789999
Q ss_pred CCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 219 NKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
...|+++..+| +-+++++|+.||.|..=|+
T Consensus 255 ~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 255 KEGVWALQSSP-SFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred cCceEEEeeCC-CcceEEecCCCCcEEeccc
Confidence 99999999886 7778999999999987655
No 80
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=4.3e-26 Score=163.72 Aligned_cols=178 Identities=16% Similarity=0.269 Sum_probs=145.5
Q ss_pred ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649 10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 89 (250)
Q Consensus 10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (250)
.+.+.++. +|...=..|+|||-....|+||..-+.|++|...+|.-. .. ...+..|...|..++|+|
T Consensus 201 ~~Pl~t~~-ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~----vd------~~Pf~gH~~SVEDLqWSp-- 267 (440)
T KOG0302|consen 201 FRPLFTFN-GHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK----VD------QRPFTGHTKSVEDLQWSP-- 267 (440)
T ss_pred cCceEEec-ccCccceeeecccccccccccCccccceEeeeeccCcee----ec------CccccccccchhhhccCC--
Confidence 34667788 999999999999955446999999999999999876421 11 112223788999999999
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEE
Q 025649 90 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 169 (250)
Q Consensus 90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 169 (250)
.....|++|+.||+|+|||++.+.... ++ ..++|...|+
T Consensus 268 ---tE~~vfaScS~DgsIrIWDiRs~~~~~-------------------------------------~~-~~kAh~sDVN 306 (440)
T KOG0302|consen 268 ---TEDGVFASCSCDGSIRIWDIRSGPKKA-------------------------------------AV-STKAHNSDVN 306 (440)
T ss_pred ---ccCceEEeeecCceEEEEEecCCCccc-------------------------------------ee-EeeccCCcee
Confidence 578899999999999999999753111 11 2267999999
Q ss_pred EEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 170 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 170 ~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.|.|+ .+-.+||+|+.||+++|||++..+.. .++..+.-|..+|+++.|+|.+...|++++.|..|.+||+
T Consensus 307 VISWn---r~~~lLasG~DdGt~~iwDLR~~~~~------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 307 VISWN---RREPLLASGGDDGTLSIWDLRQFKSG------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred eEEcc---CCcceeeecCCCceEEEEEhhhccCC------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 99999 77779999999999999999986543 6677899999999999999988889999999999999998
Q ss_pred C
Q 025649 250 S 250 (250)
Q Consensus 250 ~ 250 (250)
+
T Consensus 378 s 378 (440)
T KOG0302|consen 378 S 378 (440)
T ss_pred e
Confidence 4
No 81
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.4e-24 Score=151.44 Aligned_cols=213 Identities=11% Similarity=0.069 Sum_probs=167.7
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC--CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL--DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|+|||..+++.++++. .+.-.|..++|..... .++.++. |.+||.-++.+.+.++.|. | |..
T Consensus 37 sl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~dNkylRYF~-G------------H~~ 101 (311)
T KOG1446|consen 37 SLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHDNKYLRYFP-G------------HKK 101 (311)
T ss_pred eEEEEEcCCCceeeEee-cccccccEEEEecCCc-eEEEccCCCCCceEEEEeecCceEEEcC-C------------CCc
Confidence 58999999999999999 8888899999977666 4555555 8899999999999999998 5 789
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccC
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGG 152 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 152 (250)
.|.++..+| -+..+++++.|++|++||++..++...+.. ......+|+|+|.+++. +...|.+.-
T Consensus 102 ~V~sL~~sP------~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 102 RVNSLSVSP------KDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---SGRPIAAFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred eEEEEEecC------CCCeEEecccCCeEEeeEecCCCCceEEec---CCCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence 999999999 779999999999999999998776655544 34567899999999985 223333321
Q ss_pred --eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc---eeEEEe
Q 025649 153 --KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK---VNWLCT 227 (250)
Q Consensus 153 --~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~ 227 (250)
.+......-.+.....+.+.|| |+|++++.+...+.+++.|.-.| .++..+..+... ....+|
T Consensus 173 dkgPF~tf~i~~~~~~ew~~l~FS---~dGK~iLlsT~~s~~~~lDAf~G---------~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 173 DKGPFTTFSITDNDEAEWTDLEFS---PDGKSILLSTNASFIYLLDAFDG---------TVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CCCCceeEccCCCCccceeeeEEc---CCCCEEEEEeCCCcEEEEEccCC---------cEeeeEeeccCCCCcceeEEE
Confidence 1222111112446678999999 99999999999999999999998 444555555432 245567
Q ss_pred cCCCCCeEEEeeCCceEEEEeCC
Q 025649 228 TPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 228 ~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.| |++++++|+.||+|.+|+++
T Consensus 241 tP-ds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 241 TP-DSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred CC-CCcEEEEecCCCcEEEEEcC
Confidence 77 99999999999999999974
No 82
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.3e-25 Score=150.71 Aligned_cols=222 Identities=19% Similarity=0.171 Sum_probs=165.6
Q ss_pred CcEEEEcccc---eeeeeeccCCCCCeeeEEEcC--CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649 1 MWQIIDIRQH---CLYKSLRAGHSSICSSVQFIP--WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 1 ti~iwd~~~~---~~~~~l~~~h~~~v~~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
||+|+..+.+ +++.+|. ||.++|..++|.. .|. +|++++.||.|.||.-.+++-.+... ...
T Consensus 34 tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g~w~k~~e-----------~~~ 100 (299)
T KOG1332|consen 34 TVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENGRWTKAYE-----------HAA 100 (299)
T ss_pred cEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCc-EeeEeecCceEEEEecCCCchhhhhh-----------hhh
Confidence 6899998743 5788999 9999999999964 677 99999999999999998885433332 123
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc--eeEeeccCCCCCCccceeeccc---c-----------e
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE--LNISRSKSTTKPLKGSQSTSKV---N-----------I 139 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~---~-----------~ 139 (250)
|...|++++|.| +..|-.|++++.||.|.+.+.++. -....+...+...+.++++.|. | +
T Consensus 101 h~~SVNsV~wap----heygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k 176 (299)
T KOG1332|consen 101 HSASVNSVAWAP----HEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK 176 (299)
T ss_pred hcccceeecccc----cccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccc
Confidence 678999999999 345778999999999999988763 3445556666788999999886 4 2
Q ss_pred eEEEeeeeeec-------cCeeeeeeccccCccccEEEEEeecCCC-CCcEEEEeeCCCeEEEEecCCCcceecccccce
Q 025649 140 RDAEMEILDQS-------GGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 211 (250)
Q Consensus 140 ~~~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 211 (250)
.++ .+..|.. .. .-..-+++.+|.+.|..++|.|... -..+++++|+||++.||-.+..... ..
T Consensus 177 rlv-SgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~------wk 248 (299)
T KOG1332|consen 177 RLV-SGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP------WK 248 (299)
T ss_pred eee-ccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc------cc
Confidence 344 3332222 22 2223356899999999999996211 1258999999999999987743221 12
Q ss_pred eeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 212 LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 212 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
...+......++.+.|+. .|.+|+.++.|++|.+|.
T Consensus 249 ~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 249 KTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccCCcceEEEEEec-cccEEEEecCCcEEEEEE
Confidence 223344667899999997 889999999999999995
No 83
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=6.4e-25 Score=171.97 Aligned_cols=197 Identities=14% Similarity=0.148 Sum_probs=144.6
Q ss_pred CcEEEEcccc-------eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649 1 MWQIIDIRQH-------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 1 ti~iwd~~~~-------~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 73 (250)
+|++||+.++ +.+..+. +|...|.+++|+|++..+|++|+.|++|+|||+++++.+..+. .
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~---------- 166 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-C---------- 166 (493)
T ss_pred EEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-C----------
Confidence 5899999765 3467788 9999999999999874489999999999999999988776665 2
Q ss_pred ccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-------
Q 025649 74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI------- 146 (250)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 146 (250)
|...|.+++|+| ++++|++++.|+.|++||+++++.......+.......+.|.+++..+++.+.
T Consensus 167 --h~~~V~sla~sp------dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 167 --HSDQITSLEWNL------DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred --CCCceEEEEEEC------CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence 567899999999 99999999999999999999988777766554445556778888777775431
Q ss_pred eeeccCeee-eeeccccC-ccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCcceecccccceeeee-eccCCce
Q 025649 147 LDQSGGKRL-HLDYSVGG-HTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKN-INLNKKV 222 (250)
Q Consensus 147 ~~~~~~~~~-~~~~~~~~-h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v 222 (250)
...++.... .++..... +...+....|+ +++++|++++ .|+.|++||+.++. ++... ..+..++
T Consensus 239 VklWDlr~~~~p~~~~~~d~~~~~~~~~~d---~d~~~L~lggkgDg~Iriwdl~~~~---------~~~~~~~~s~~~~ 306 (493)
T PTZ00421 239 IMLWDTRKMASPYSTVDLDQSSALFIPFFD---EDTNLLYIGSKGEGNIRCFELMNER---------LTFCSSYSSVEPH 306 (493)
T ss_pred EEEEeCCCCCCceeEeccCCCCceEEEEEc---CCCCEEEEEEeCCCeEEEEEeeCCc---------eEEEeeccCCCCC
Confidence 222222211 12222222 23345556677 8899988887 59999999999873 22222 2344566
Q ss_pred eEEEecC
Q 025649 223 NWLCTTP 229 (250)
Q Consensus 223 ~~~~~~~ 229 (250)
..+++.|
T Consensus 307 ~g~~~~p 313 (493)
T PTZ00421 307 KGLCMMP 313 (493)
T ss_pred cceEecc
Confidence 7777776
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=158.10 Aligned_cols=225 Identities=15% Similarity=0.190 Sum_probs=170.0
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC----CCCc--cce---------ecCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK----GRPN--KIV---------NFGLP 65 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~----~~~~--~~~---------~~~~~ 65 (250)
|.+||.+++++++.++. ||.+.|++++|++.+. ++++++.|++-.||...- .+.. ... ..+.+
T Consensus 171 TA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~ 248 (481)
T KOG0300|consen 171 TARIWSLESGACLATYT-GHTGSVNSIKFHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNR 248 (481)
T ss_pred ceeEEeeccccceeeec-ccccceeeEEeccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccc
Confidence 56899999999999999 9999999999999999 999999999999997321 1100 000 00000
Q ss_pred CCC------------CCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCcccee
Q 025649 66 ENN------------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 133 (250)
Q Consensus 66 ~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 133 (250)
+.. +...+..|...|.+..|-. .++.+++++.|.+..+||++++..+..+..+. .....+.
T Consensus 249 d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~------gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd-~ELtHcs 321 (481)
T KOG0300|consen 249 DTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA------GGQQMVTASWDRTANLWDVETGEVVNILTGHD-SELTHCS 321 (481)
T ss_pred ccccccccCCceeeeeeeeeeccccceEehhhhc------CcceeeeeeccccceeeeeccCceeccccCcc-hhccccc
Confidence 000 0112233566666777766 79999999999999999999999887766653 6778888
Q ss_pred ecccceeEEE------eeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccc
Q 025649 134 TSKVNIRDAE------MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI 207 (250)
Q Consensus 134 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 207 (250)
-+|..+++++ ...||.. +..+.+..|+||...|+++.|. .+..+++|+.|.+|++||+++..
T Consensus 322 tHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS~vF~----~dd~vVSgSDDrTvKvWdLrNMR------ 389 (481)
T KOG0300|consen 322 THPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTSVVFN----TDDRVVSGSDDRTVKVWDLRNMR------ 389 (481)
T ss_pred cCCcceEEEEeccCceeEeccch--hhcceeeeecccccceeEEEEe----cCCceeecCCCceEEEeeecccc------
Confidence 8999988885 2344444 4556678899999999999998 45789999999999999999973
Q ss_pred ccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 208 NNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 208 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
......-..++++.++.+. .+.+|+.--.++.|++||++
T Consensus 390 ---splATIRtdS~~NRvavs~-g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 390 ---SPLATIRTDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred ---CcceeeecCCccceeEeec-CCceEEeccCCceEEEEecC
Confidence 2223344566788888874 55678888888999999985
No 85
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=174.22 Aligned_cols=221 Identities=12% Similarity=0.077 Sum_probs=157.7
Q ss_pred eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc-----------------------c----cee----
Q 025649 13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN-----------------------K----IVN---- 61 (250)
Q Consensus 13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-----------------------~----~~~---- 61 (250)
.+.+..+|.+.|.++.||+||+ |||+|+.||.|+||.+...+.. . ...
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred eeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 3445458999999999999999 9999999999999998651100 0 000
Q ss_pred ---cC--CCC-----------CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCC
Q 025649 62 ---FG--LPE-----------NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT 125 (250)
Q Consensus 62 ---~~--~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 125 (250)
.+ .+. ..+......|.+.|..+.|+ .+++|++++.|.+|+||++....++..+...
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-------Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn- 409 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-------KNNFLLSSSMDKTVRLWHPGRKECLKVFSHN- 409 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccc-------cCCeeEeccccccEEeecCCCcceeeEEecC-
Confidence 00 000 00112233477788889998 5889999999999999999999999988776
Q ss_pred CCCccceeeccc-ceeEEEeeeeeeccC----eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649 126 KPLKGSQSTSKV-NIRDAEMEILDQSGG----KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 126 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~ 200 (250)
..|+|++|+|. .++++ .|+.|+... ...+.+.-... ..-|++++|. |+|++.+.|+.+|.+++|+....
T Consensus 410 -dfVTcVaFnPvDDryFi-SGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~---PdGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 410 -DFVTCVAFNPVDDRYFI-SGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYS---PDGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred -CeeEEEEecccCCCcEe-ecccccceEEeecCcCeeEeehhh-hhhheeEEec---cCCceEEEEEeccEEEEEEccCC
Confidence 79999999995 55555 666665432 22232223333 3779999999 89999999999999999999887
Q ss_pred cceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 201 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+-....+-.-.-..-..|. .|+.+.+.|.+...+++.+.|..|+|||.
T Consensus 484 k~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred eEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 5432110000000111233 89999999877777888888999999997
No 86
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2.1e-25 Score=155.71 Aligned_cols=222 Identities=16% Similarity=0.132 Sum_probs=158.1
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc--cceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN--KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 96 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (250)
.|.+.|+++.+.+....++++|+.||.+.+||+++.... .-+.....-.....-...|.-.|.++.|.| .|..
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP-----~DtG 115 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP-----IDTG 115 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee-----ecCc
Confidence 689999999999865459999999999999999754310 000000000000001112455666666766 6888
Q ss_pred EEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc--eeEEEeeeeeec----cCeeeeeeccccCccccEEE
Q 025649 97 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN--IRDAEMEILDQS----GGKRLHLDYSVGGHTAAASC 170 (250)
Q Consensus 97 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~ 170 (250)
.+.+++.|.++++||..+-+....+..+ ..+.+-+++|-. ..+++++..+.. +.....+-+.+.||.+.|.+
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~me--~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFKME--GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred eeecccccceEEEeecccceeeEEeecC--ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 9999999999999999998887777665 567777777743 233334443333 23455567889999999999
Q ss_pred EEeecCCCCCcEEEEeeCCCeEEEEecCCCc-cee-----cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQ-GVQ-----TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV 244 (250)
Q Consensus 171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 244 (250)
+.|+| ...-.|++|+.||.|++||++... +.. ....++.+.....|.+.|+.++|.+ ++.++++++.|..+
T Consensus 194 V~Wsp--~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 194 VEWSP--SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRI 270 (397)
T ss_pred EEecc--CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhhhccCccce
Confidence 99995 344567899999999999998752 211 1122344445678999999999997 99999999999999
Q ss_pred EEEeCC
Q 025649 245 KVYSIS 250 (250)
Q Consensus 245 ~vw~~~ 250 (250)
++|+.+
T Consensus 271 r~wn~~ 276 (397)
T KOG4283|consen 271 RVWNME 276 (397)
T ss_pred EEeecc
Confidence 999863
No 87
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=8.5e-27 Score=164.90 Aligned_cols=214 Identities=14% Similarity=0.127 Sum_probs=173.5
Q ss_pred cEEEEcccceeeeeecc-------CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcc
Q 025649 2 WQIIDIRQHCLYKSLRA-------GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQC 74 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~-------~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 74 (250)
|.+||..+|++.+.++. -+..+|.|+.|+.|.. +|++|+.||.|++|.+++|.+++.|...
T Consensus 237 iEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG~ClRrFdrA----------- 304 (508)
T KOG0275|consen 237 IEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIETGQCLRRFDRA----------- 304 (508)
T ss_pred eeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEEEEEecchHHHHhhhh-----------
Confidence 67999999987765542 4678999999999999 9999999999999999999999999855
Q ss_pred cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---eeeeecc
Q 025649 75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSG 151 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 151 (250)
|...|+++.|+. |+..+++++.|.++++.-+.+|+++..+..+. ..+....|+++|..+++. |....|.
T Consensus 305 -HtkGvt~l~FSr------D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs-Syvn~a~ft~dG~~iisaSsDgtvkvW~ 376 (508)
T KOG0275|consen 305 -HTKGVTCLSFSR------DNSQILSASFDQTVRIHGLKSGKCLKEFRGHS-SYVNEATFTDDGHHIISASSDGTVKVWH 376 (508)
T ss_pred -hccCeeEEEEcc------CcchhhcccccceEEEeccccchhHHHhcCcc-ccccceEEcCCCCeEEEecCCccEEEec
Confidence 789999999998 99999999999999999999999999888774 789999999999999841 2222222
Q ss_pred Ceeeeee--------------------------------------------ccccC---ccccEEEEEeecCCCCCcEEE
Q 025649 152 GKRLHLD--------------------------------------------YSVGG---HTAAASCVAFSMFGERGKYLI 184 (250)
Q Consensus 152 ~~~~~~~--------------------------------------------~~~~~---h~~~v~~~~~~p~~~~~~~l~ 184 (250)
.+..+++ +.+.. ..+...+...+ |.|.++.
T Consensus 377 ~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lS---pkGewiY 453 (508)
T KOG0275|consen 377 GKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILS---PKGEWIY 453 (508)
T ss_pred CcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEec---CCCcEEE
Confidence 2111111 12211 12233455567 8899999
Q ss_pred EeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 185 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 185 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
+.++|+.++.|...++ .+-..+.-|+..|..++-+| ..+.+++-+.||.+++|.
T Consensus 454 cigED~vlYCF~~~sG---------~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 454 CIGEDGVLYCFSVLSG---------KLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEccCcEEEEEEeecC---------ceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 9999999999999988 66667788999999999998 667899999999999995
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=165.26 Aligned_cols=213 Identities=19% Similarity=0.196 Sum_probs=173.7
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
+.||+..+....+++. .....|.++.|..||+ +|+.|+..|.|+++|..+...++.+.. |..+++
T Consensus 50 vqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~iLR~~~a-------------h~apv~ 114 (487)
T KOG0310|consen 50 VQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSRVILRQLYA-------------HQAPVH 114 (487)
T ss_pred EEEEecchhhhhhhHH-hhccceeEEEeecCCe-EEEccCCcCcEEEeccccHHHHHHHhh-------------ccCcee
Confidence 6788888877777777 7888999999999999 999999999999999766445566653 578999
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC----eee-e
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG----KRL-H 156 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~ 156 (250)
...|+| .++..+++|+.|+.+++||+.+......+.. +...+.+.+++|.+..++..|++|+... +.. .
T Consensus 115 ~~~f~~-----~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~ 188 (487)
T KOG0310|consen 115 VTKFSP-----QDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS 188 (487)
T ss_pred EEEecc-----cCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc
Confidence 999999 5788899999999999999999886334444 4588999999999887776777666542 211 3
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
.+.++ .|..+|..+.+- |.|..+++++ ...|++||+-++. +.+.....|...|+++++.. ++..|+
T Consensus 189 ~v~el-nhg~pVe~vl~l---psgs~iasAg-Gn~vkVWDl~~G~--------qll~~~~~H~KtVTcL~l~s-~~~rLl 254 (487)
T KOG0310|consen 189 RVVEL-NHGCPVESVLAL---PSGSLIASAG-GNSVKVWDLTTGG--------QLLTSMFNHNKTVTCLRLAS-DSTRLL 254 (487)
T ss_pred eeEEe-cCCCceeeEEEc---CCCCEEEEcC-CCeEEEEEecCCc--------eehhhhhcccceEEEEEeec-CCceEe
Confidence 33444 488999999999 8889999987 4689999999763 45555566999999999997 889999
Q ss_pred EeeCCceEEEEeC
Q 025649 237 VCDTSKVVKVYSI 249 (250)
Q Consensus 237 s~~~d~~i~vw~~ 249 (250)
+|+-|+.+++||+
T Consensus 255 S~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 255 SGSLDRHVKVFDT 267 (487)
T ss_pred ecccccceEEEEc
Confidence 9999999999985
No 89
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.7e-25 Score=164.49 Aligned_cols=194 Identities=18% Similarity=0.199 Sum_probs=155.0
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC---------CCCccceecCCCCCCCCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK---------GRPNKIVNFGLPENNGNAG 72 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~---------~~~~~~~~~~~~~~~~~~~ 72 (250)
|++|.+.+|+++..+. +|-..|+|+.|+.||. +|+|||.||.|.+|.+.+ -++++.|.
T Consensus 105 lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~----------- 171 (476)
T KOG0646|consen 105 LYLWELSSGILLNVLS-AHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS----------- 171 (476)
T ss_pred EEEEEeccccHHHHHH-hhccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccceeeec-----------
Confidence 7899999999999999 9999999999999999 999999999999998743 12333333
Q ss_pred cccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC
Q 025649 73 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG 152 (250)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (250)
-|.-.|+.+.+.+ .+...++++++.|.++++||+..+..+..+..+ ..+.+++.+|-...+. +|..++...
T Consensus 172 --~HtlsITDl~ig~----Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp--~si~av~lDpae~~~y-iGt~~G~I~ 242 (476)
T KOG0646|consen 172 --DHTLSITDLQIGS----GGTNARLYTASEDRTIKLWDLSLGVLLLTITFP--SSIKAVALDPAERVVY-IGTEEGKIF 242 (476)
T ss_pred --cCcceeEEEEecC----CCccceEEEecCCceEEEEEeccceeeEEEecC--CcceeEEEcccccEEE-ecCCcceEE
Confidence 3677899988876 124579999999999999999999988887776 7899999999888777 444333210
Q ss_pred --------------------eeeeeeccccCccc--cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccc
Q 025649 153 --------------------KRLHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND 210 (250)
Q Consensus 153 --------------------~~~~~~~~~~~h~~--~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 210 (250)
.....+..+.||.+ .|+|++++ -||.+|++|+.||.++|||..+.+
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais---~DgtlLlSGd~dg~VcvWdi~S~Q--------- 310 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS---TDGTLLLSGDEDGKVCVWDIYSKQ--------- 310 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe---cCccEEEeeCCCCCEEEEecchHH---------
Confidence 12233456778988 99999999 899999999999999999999984
Q ss_pred eeeeeeccCCceeEEEecC
Q 025649 211 LLIKNINLNKKVNWLCTTP 229 (250)
Q Consensus 211 ~~~~~~~~~~~v~~~~~~~ 229 (250)
+++......++|+.+.+.|
T Consensus 311 ~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 311 CIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred HHHHHhhhccccceeEeec
Confidence 4444444566777777754
No 90
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=3e-24 Score=169.29 Aligned_cols=199 Identities=12% Similarity=0.027 Sum_probs=140.1
Q ss_pred CcEEEEcccce--------eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCC
Q 025649 1 MWQIIDIRQHC--------LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAG 72 (250)
Q Consensus 1 ti~iwd~~~~~--------~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 72 (250)
+|+|||+.++. .+..+. +|...|.+++|+|++..+|++++.|++|++||+++++.+..+.
T Consensus 98 tIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----------- 165 (568)
T PTZ00420 98 TIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----------- 165 (568)
T ss_pred eEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-----------
Confidence 58999997542 344678 9999999999999998567899999999999999888666554
Q ss_pred cccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCC----ccceeecccceeEEEeeee-
Q 025649 73 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL----KGSQSTSKVNIRDAEMEIL- 147 (250)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~- 147 (250)
+...|.+++|+| +|++|++++.|+.|++||+++++.+..+..+.... +....|++++.++++.+..
T Consensus 166 ---~~~~V~Slswsp------dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~ 236 (568)
T PTZ00420 166 ---MPKKLSSLKWNI------KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK 236 (568)
T ss_pred ---cCCcEEEEEECC------CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC
Confidence 346799999999 99999999999999999999998877666554321 2223456888888864422
Q ss_pred ------eeccCe-eeeeecc--ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc
Q 025649 148 ------DQSGGK-RLHLDYS--VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 218 (250)
Q Consensus 148 ------~~~~~~-~~~~~~~--~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 218 (250)
..++.. ...++.. +..+.+.+...... ++|.++++|+.|+.|++|++..+.. ..+. ...+
T Consensus 237 ~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~---~tg~l~lsGkGD~tIr~~e~~~~~~-------~~l~-~~~s 305 (568)
T PTZ00420 237 NNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE---STGLIYLIGKGDGNCRYYQHSLGSI-------RKVN-EYKS 305 (568)
T ss_pred CCccEEEEEECCCCCCceEEEEecCCccceEEeeeC---CCCCEEEEEECCCeEEEEEccCCcE-------Eeec-cccc
Confidence 222222 1222222 23333333333223 6689999999999999999987521 1122 2235
Q ss_pred CCceeEEEecCCC
Q 025649 219 NKKVNWLCTTPTE 231 (250)
Q Consensus 219 ~~~v~~~~~~~~~ 231 (250)
..+..+++|.|..
T Consensus 306 ~~p~~g~~f~Pkr 318 (568)
T PTZ00420 306 CSPFRSFGFLPKQ 318 (568)
T ss_pred CCCccceEEcccc
Confidence 6677888888843
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.2e-25 Score=153.93 Aligned_cols=205 Identities=14% Similarity=0.151 Sum_probs=149.2
Q ss_pred CcEEEEccc-ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~-~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
|||+|+++. |..+.+-...|.++|.+++|+.+|. .+++|+.|+.+++||+.+++....-. |..+
T Consensus 51 tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S~Q~~~v~~--------------Hd~p 115 (347)
T KOG0647|consen 51 TVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLASGQVSQVAA--------------HDAP 115 (347)
T ss_pred ceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccCCCeeeeee--------------cccc
Confidence 699999985 5655544448999999999999998 89999999999999999996544433 6889
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC-----------------------------------
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST----------------------------------- 124 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----------------------------------- 124 (250)
|..+.|-+. ..-..|++|+.|++|++||++....+..+..+
T Consensus 116 vkt~~wv~~----~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k 191 (347)
T KOG0647|consen 116 VKTCHWVPG----MNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFK 191 (347)
T ss_pred eeEEEEecC----CCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhh
Confidence 999998861 13358999999999999999986544433322
Q ss_pred -----CCCCccceeecccceeEEEeeeeeeccC------eeeeeeccccCcc---------ccEEEEEeecCCCCCcEEE
Q 025649 125 -----TKPLKGSQSTSKVNIRDAEMEILDQSGG------KRLHLDYSVGGHT---------AAASCVAFSMFGERGKYLI 184 (250)
Q Consensus 125 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~h~---------~~v~~~~~~p~~~~~~~l~ 184 (250)
.+-.+++++..++....+ +|...++.. ...+.-..|+.|. ..|++|+|+ |....|+
T Consensus 192 ~~~SpLk~Q~R~va~f~d~~~~a-lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh---P~hgtlv 267 (347)
T KOG0647|consen 192 RIESPLKWQTRCVACFQDKDGFA-LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH---PVHGTLV 267 (347)
T ss_pred hhcCcccceeeEEEEEecCCceE-eeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee---cccceEE
Confidence 122345556555554444 444444321 1112234455554 257889999 6667899
Q ss_pred EeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649 185 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 238 (250)
Q Consensus 185 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 238 (250)
|++.||+..+||-... ..+.....|..+|++..|+. +|.+++-+
T Consensus 268 TaGsDGtf~FWDkdar---------~kLk~s~~~~qpItcc~fn~-~G~ifaYA 311 (347)
T KOG0647|consen 268 TAGSDGTFSFWDKDAR---------TKLKTSETHPQPITCCSFNR-NGSIFAYA 311 (347)
T ss_pred EecCCceEEEecchhh---------hhhhccCcCCCccceeEecC-CCCEEEEE
Confidence 9999999999998876 44566778999999999996 88887653
No 92
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=6.8e-25 Score=150.50 Aligned_cols=203 Identities=12% Similarity=0.146 Sum_probs=159.0
Q ss_pred eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
+.++ +|...|.+++|+.+|. .|++|+.|+++++|++...+....+... .|.+.|-.++|.| +
T Consensus 14 r~~~-~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~~~~-----------gh~~svdql~w~~-----~ 75 (313)
T KOG1407|consen 14 RELQ-GHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKELVYR-----------GHTDSVDQLCWDP-----K 75 (313)
T ss_pred HHhh-hhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhhccc-----------CCCcchhhheeCC-----C
Confidence 4566 8999999999999999 8999999999999999877554444322 2667788888888 6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec---cCeeeeeeccccCccccEEE
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS---GGKRLHLDYSVGGHTAAASC 170 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~ 170 (250)
....+++++.|.+|++||.+.+++....... ..-.-+.|+|+|.+++..+-.|.. +.+..+.+...+ ....+..
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~i~~~--~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne 152 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTARIETK--GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNE 152 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEEeecc--CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeee
Confidence 8899999999999999999999988777665 556678999999999843322221 122222222222 3345778
Q ss_pred EEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+.|+ .++++++....-|+|.|-..... +++..+.+|.....++.|.| +|++||+|+.|..+.+||+.
T Consensus 153 ~~w~---~~nd~Fflt~GlG~v~ILsypsL---------kpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ 219 (313)
T KOG1407|consen 153 ISWN---NSNDLFFLTNGLGCVEILSYPSL---------KPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVD 219 (313)
T ss_pred eeec---CCCCEEEEecCCceEEEEecccc---------ccccccccCCcceEEEEECC-CCceEeeccccceeeccChh
Confidence 8888 55666666666799999999987 67788899999999999998 99999999999999999973
No 93
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.6e-24 Score=142.51 Aligned_cols=213 Identities=12% Similarity=0.119 Sum_probs=151.7
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCC----------
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA---------- 88 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------- 88 (250)
.|.+.|.|.+|+|+|+ +|++|+.|.+|++..++...+..+-. ...+..|...|..++|-..
T Consensus 87 hhkgsiyc~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~--------dle~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGH--------DLEFNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred ccCccEEEEEecCccC-eEEecCCCceEEEEecccccccccCc--------ceeeeecCCceeeeEEecCCCcCceEEEe
Confidence 6889999999999999 99999999999998765332211100 0000012222222222110
Q ss_pred ------------------------------cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC------CCCCccce
Q 025649 89 ------------------------------DMLDKTNKICVVAKGDGVVDVINIESELNISRSKST------TKPLKGSQ 132 (250)
Q Consensus 89 ------------------------------~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------~~~~~~~~ 132 (250)
..+.-++-.+++|++|.+|++||++-..+....... +...+..+
T Consensus 158 ~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred cCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 011126788999999999999999987766554322 22568889
Q ss_pred eecccceeEEEeeeee----eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccc
Q 025649 133 STSKVNIRDAEMEILD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN 208 (250)
Q Consensus 133 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 208 (250)
+..|.|+++++ |..| ..+.+..+.++.+..|...|.|+.|+ |...|+++++.|..|++-|++..-..+
T Consensus 238 ~vdpsgrll~s-g~~dssc~lydirg~r~iq~f~phsadir~vrfs---p~a~yllt~syd~~ikltdlqgdla~e---- 309 (350)
T KOG0641|consen 238 AVDPSGRLLAS-GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS---PGAHYLLTCSYDMKIKLTDLQGDLAHE---- 309 (350)
T ss_pred EECCCcceeee-ccCCCceEEEEeeCCceeeeeCCCccceeEEEeC---CCceEEEEecccceEEEeecccchhhc----
Confidence 99999999994 3322 22344556677899999999999999 889999999999999999998642211
Q ss_pred cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 209 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
-.+.....|...+..+.|+|.+ -.+++.+.|.++.+|-++
T Consensus 310 -l~~~vv~ehkdk~i~~rwh~~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 310 -LPIMVVAEHKDKAIQCRWHPQD-FSFISSSADKTATLWALN 349 (350)
T ss_pred -CceEEEEeccCceEEEEecCcc-ceeeeccCcceEEEeccC
Confidence 2344567899999999999954 458889999999999764
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.7e-24 Score=158.08 Aligned_cols=195 Identities=15% Similarity=0.159 Sum_probs=161.2
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
..+.++...|..+ .+++|+.|.++.++|..+++.+..++ + |...|..+.++| +...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~-G------------h~kki~~v~~~~------~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILATLK-G------------HTKKITSVKFHK------DLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhhcc-C------------cceEEEEEEecc------chhheeec
Confidence 4688888888855 89999999999999999999999988 4 688999999998 89999999
Q ss_pred eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---eeeeeccCeeeeeecccc--CccccEEEEEeecC
Q 025649 102 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSGGKRLHLDYSVG--GHTAAASCVAFSMF 176 (250)
Q Consensus 102 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~ 176 (250)
+.|..|++|............ .+...++.+..+|.|.|++.. +.|-..+......+.... ...-.+++.+|+
T Consensus 280 Sad~~i~vws~~~~s~~~~~~-~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-- 356 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPTSSR-PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-- 356 (506)
T ss_pred CCcceEEeeccccccCccccc-cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc--
Confidence 999999999998766444333 345889999999999999852 334444433333333322 233458999999
Q ss_pred CCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 177 GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 177 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
|||.+|.+|..|+.|+|||+.+. .-...+.+|+++|..+.|+. +|.+|++++.|+.|++||+|
T Consensus 357 -pDgLifgtgt~d~~vkiwdlks~---------~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 357 -PDGLIFGTGTPDGVVKIWDLKSQ---------TNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred -CCceEEeccCCCceEEEEEcCCc---------cccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEeh
Confidence 99999999999999999999997 45567889999999999996 99999999999999999986
No 95
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.1e-24 Score=153.17 Aligned_cols=215 Identities=16% Similarity=0.302 Sum_probs=167.3
Q ss_pred eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649 12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML 91 (250)
Q Consensus 12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (250)
.+++|. .|.+.|+++.|+|... +|++|+.|++|+++|+......+.++.- -....|.++.|+|
T Consensus 164 vIRTlY-DH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~-----------qd~~~vrsiSfHP---- 226 (430)
T KOG0640|consen 164 VIRTLY-DHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVF-----------QDTEPVRSISFHP---- 226 (430)
T ss_pred eEeehh-hccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHh-----------hccceeeeEeecC----
Confidence 467787 8999999999999998 9999999999999999765443333211 0346799999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCceeEeec--cCCCCCCccceeecccceeEEE---eeeeeeccCeeeeeecccc-Ccc
Q 025649 92 DKTNKICVVAKGDGVVDVINIESELNISRS--KSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVG-GHT 165 (250)
Q Consensus 92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~h~ 165 (250)
.|.+|++|....++++||+++-++.... ...+...+.++.+++.|++.++ .|....+++...+++.++. +|.
T Consensus 227 --sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~ 304 (430)
T KOG0640|consen 227 --SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG 304 (430)
T ss_pred --CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC
Confidence 9999999999999999999997765443 3345578999999999999985 3344455566666777764 454
Q ss_pred -ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec---------------------------------------
Q 025649 166 -AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT--------------------------------------- 205 (250)
Q Consensus 166 -~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--------------------------------------- 205 (250)
..|.+..|. .+|+|+++.+.|..+++|.+.++..+..
T Consensus 305 gsevcSa~Ft---kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd 381 (430)
T KOG0640|consen 305 GSEVCSAVFT---KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD 381 (430)
T ss_pred CceeeeEEEc---cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecc
Confidence 468889999 9999999999999999999988765431
Q ss_pred ccc-cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 206 SIN-NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 206 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
... ........+|++.+.++.-+| .+..|++|+.|..+++|--
T Consensus 382 aRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 382 ARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccchhhhhhcccCCCCCceEEEeCC-CCCceeeecccceeeeeee
Confidence 000 111123458999999998887 6667999999999999963
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.1e-24 Score=158.59 Aligned_cols=205 Identities=18% Similarity=0.183 Sum_probs=154.7
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
+|...+.+++.++|++ +|++|+.|..|.||+.++.+.++.+. + |.+.|.+++|.. ....+
T Consensus 200 ~h~keil~~avS~Dgk-ylatgg~d~~v~Iw~~~t~ehv~~~~-g------------hr~~V~~L~fr~------gt~~l 259 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGK-YLATGGRDRHVQIWDCDTLEHVKVFK-G------------HRGAVSSLAFRK------GTSEL 259 (479)
T ss_pred cccceeEEEEEcCCCc-EEEecCCCceEEEecCcccchhhccc-c------------cccceeeeeeec------Cccce
Confidence 7888999999999999 99999999999999999999998877 4 689999999997 77899
Q ss_pred EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCe---eeeeeccccCccccEEEEEeec
Q 025649 99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK---RLHLDYSVGGHTAAASCVAFSM 175 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~p 175 (250)
++++.|+.|++|+++....+..+..+. ..+..+....-++.+. +|..|.+..- +.+....+.+|.+.+.|++|-
T Consensus 260 ys~s~Drsvkvw~~~~~s~vetlyGHq-d~v~~IdaL~reR~vt-VGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I- 336 (479)
T KOG0299|consen 260 YSASADRSVKVWSIDQLSYVETLYGHQ-DGVLGIDALSRERCVT-VGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI- 336 (479)
T ss_pred eeeecCCceEEEehhHhHHHHHHhCCc-cceeeechhcccceEE-eccccceeEEEeccccceeeeeCCCCCeeeEEEe-
Confidence 999999999999999766665555553 5555555554444443 4433333210 112223567888899999997
Q ss_pred CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee---eccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 176 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN---INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 176 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+...+++||.+|.|.+|++...+.+.+...+..+... ..+...|++++..| ...++++|+.+|.|++|.++
T Consensus 337 ---n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 337 ---NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred ---cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEec
Confidence 6688999999999999999988655332111111111 12234789999998 77899999999999999763
No 97
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1e-24 Score=159.53 Aligned_cols=199 Identities=14% Similarity=0.159 Sum_probs=153.7
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
+|++.|.+|+|+..-++.|+|||.|.+|++||+.++++..++. . |.+.|.++.|+| ....+|
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~------------~~k~Vq~l~wh~-----~~p~~L 302 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-H------------HGKKVQTLEWHP-----YEPSVL 302 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-h------------cCCceeEEEecC-----CCceEE
Confidence 7999999999999888899999999999999999999998887 3 578999999998 578999
Q ss_pred EEEeCCCeEEEEeCCCce-eEeeccCCCCCCccceeecccceeEEEeeeeeecc-----CeeeeeeccccCccccEEEEE
Q 025649 99 VVAKGDGVVDVINIESEL-NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG-----GKRLHLDYSVGGHTAAASCVA 172 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~ 172 (250)
++|+.|++|.+.|++... ....... ...+..++|.|.....+.++.-++.. +...+++.++++|.++|.++.
T Consensus 303 LsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~ 380 (463)
T KOG0270|consen 303 LSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS 380 (463)
T ss_pred EeccccceEEeeeccCccccCceEEe--ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEE
Confidence 999999999999999522 1122222 36788889988776665455444432 234478899999999999999
Q ss_pred eecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC---ceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 173 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK---KVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 173 ~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+++..| .+++|++.|+.|++|++...... ....|.- ...+.++.|...-.++.|+..+.++|||+
T Consensus 381 ~n~~~p--~~l~t~s~d~~Vklw~~~~~~~~----------~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 381 VNIQTP--GLLSTASTDKVVKLWKFDVDSPK----------SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred ecCCCC--cceeeccccceEEEEeecCCCCc----------ccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 996433 58999999999999998764221 1122221 23445666655667888999999999996
No 98
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=6.6e-24 Score=148.75 Aligned_cols=201 Identities=15% Similarity=0.144 Sum_probs=154.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
.|+++|+.++...... .|..+|.||.+++... .+++||.|++|++||.+.......+. ....|
T Consensus 76 ~vr~~Dln~~~~~~ig--th~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d--------------~~kkV 138 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIG--THDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFD--------------QGKKV 138 (323)
T ss_pred eEEEEEecCCcceeec--cCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccc--------------cCceE
Confidence 3788999888775444 5999999999998777 89999999999999999765555555 34688
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe-eccCCCCCCccceeecccceeEEEeeeeeeccC-------
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG------- 152 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 152 (250)
.++... ++.|++|+.|..+.+||+++..... ......+-.+.++++-|++.-++ .++.+++..
T Consensus 139 y~~~v~--------g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~-~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 139 YCMDVS--------GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYV-VSSIEGRVAVEYFDDS 209 (323)
T ss_pred EEEecc--------CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceE-EEeecceEEEEccCCc
Confidence 888775 7889999999999999999865443 33344457789999999766666 555555531
Q ss_pred -eeeeeeccccCcc---------ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCce
Q 025649 153 -KRLHLDYSVGGHT---------AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 222 (250)
Q Consensus 153 -~~~~~~~~~~~h~---------~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (250)
........|+.|. -+|++++|+ |-...|+||+.||.|.+||+.+. +.+..+......|
T Consensus 210 ~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh---p~~~tfaTgGsDG~V~~Wd~~~r---------Krl~q~~~~~~SI 277 (323)
T KOG1036|consen 210 EEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH---PIHGTFATGGSDGIVNIWDLFNR---------KRLKQLAKYETSI 277 (323)
T ss_pred hHHhhhceeEEeeecccCCceEEEEeceeEec---cccceEEecCCCceEEEccCcch---------hhhhhccCCCCce
Confidence 1112234455554 378999999 66778999999999999999997 5555666667789
Q ss_pred eEEEecCCCCCeEEEeeC
Q 025649 223 NWLCTTPTESENLVVCDT 240 (250)
Q Consensus 223 ~~~~~~~~~~~~l~s~~~ 240 (250)
.+++|+. +|..||.++.
T Consensus 278 ~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 278 SSLSFSM-DGSLLAIASS 294 (323)
T ss_pred EEEEecc-CCCeEEEEec
Confidence 9999996 9999998763
No 99
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.3e-24 Score=161.99 Aligned_cols=199 Identities=12% Similarity=0.112 Sum_probs=146.6
Q ss_pred CcEEEEcccc----eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649 1 MWQIIDIRQH----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 1 ti~iwd~~~~----~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
+|++||+... +..+.|...-...|.+++|++.|. .|++.+..-..+|+|-. |..+..+..+............|
T Consensus 190 ~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGH 267 (641)
T KOG0772|consen 190 TVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGH 267 (641)
T ss_pred eEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcceeEEccC-CceeeeeeccchhhhhhhccCCc
Confidence 5899999733 333444434556899999999998 67777777899999975 44333333343333333444557
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeee
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH 156 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (250)
...+++..|+| .+...+++++.||++|+||+...+.......+
T Consensus 268 ia~lt~g~whP-----~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~-------------------------------- 310 (641)
T KOG0772|consen 268 IAELTCGCWHP-----DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT-------------------------------- 310 (641)
T ss_pred eeeeecccccc-----CcccceEEecCCCcEEEEecCCchhheeEEee--------------------------------
Confidence 88899999999 56788999999999999999874422111110
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC--ceeEEEecCCCCCe
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK--KVNWLCTTPTESEN 234 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~ 234 (250)
....+..-.++.++|+ ++|++||+|+.||.|.+||..+.... .....-.+|.. .|+++.|++ ||++
T Consensus 311 --k~~~g~Rv~~tsC~~n---rdg~~iAagc~DGSIQ~W~~~~~~v~------p~~~vk~AH~~g~~Itsi~FS~-dg~~ 378 (641)
T KOG0772|consen 311 --KPAGGKRVPVTSCAWN---RDGKLIAAGCLDGSIQIWDKGSRTVR------PVMKVKDAHLPGQDITSISFSY-DGNY 378 (641)
T ss_pred --ccCCCcccCceeeecC---CCcchhhhcccCCceeeeecCCcccc------cceEeeeccCCCCceeEEEecc-ccch
Confidence 1123445678899999 89999999999999999998664322 23344567776 899999997 9999
Q ss_pred EEEeeCCceEEEEeCC
Q 025649 235 LVVCDTSKVVKVYSIS 250 (250)
Q Consensus 235 l~s~~~d~~i~vw~~~ 250 (250)
|++-+.|+++++||++
T Consensus 379 LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 379 LLSRGFDDTLKVWDLR 394 (641)
T ss_pred hhhccCCCceeeeecc
Confidence 9999999999999985
No 100
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=3.3e-24 Score=154.14 Aligned_cols=188 Identities=14% Similarity=0.167 Sum_probs=141.4
Q ss_pred cEEEEcccceee---eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCLY---KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~~---~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|++|...+|.-. ..|. +|+..|..|+|||..+.+|+|||.||+|+|||++.+.....+... .|..
T Consensus 236 I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k-----------Ah~s 303 (440)
T KOG0302|consen 236 IHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK-----------AHNS 303 (440)
T ss_pred eEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee-----------ccCC
Confidence 678888776543 3466 899999999999998879999999999999999988433333211 2678
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD 158 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (250)
.|+.+.|+. +-.+|++|+.||+++|||++..+. .+++
T Consensus 304 DVNVISWnr------~~~lLasG~DdGt~~iwDLR~~~~-------------------------------------~~pV 340 (440)
T KOG0302|consen 304 DVNVISWNR------REPLLASGGDDGTLSIWDLRQFKS-------------------------------------GQPV 340 (440)
T ss_pred ceeeEEccC------CcceeeecCCCceEEEEEhhhccC-------------------------------------CCcc
Confidence 899999997 666999999999999999996331 1356
Q ss_pred ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec----c-cc--cceeeeeecc--CCceeEEEecC
Q 025649 159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT----S-IN--NDLLIKNINL--NKKVNWLCTTP 229 (250)
Q Consensus 159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~-~~--~~~~~~~~~~--~~~v~~~~~~~ 229 (250)
..|+-|+.+|+++.|+| .+...|++++.|..|.+||+........ . .. .-+.+.+.-| ...+..+.|++
T Consensus 341 A~fk~Hk~pItsieW~p--~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~ 418 (440)
T KOG0302|consen 341 ATFKYHKAPITSIEWHP--HEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHR 418 (440)
T ss_pred eeEEeccCCeeEEEecc--ccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheecc
Confidence 68889999999999996 4567888889999999999976433110 0 00 0011122334 34688899999
Q ss_pred CCCCeEEEeeCCceEEEE
Q 025649 230 TESENLVVCDTSKVVKVY 247 (250)
Q Consensus 230 ~~~~~l~s~~~d~~i~vw 247 (250)
.-+.++++.+.|| +.||
T Consensus 419 QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 419 QIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CCCCeEEEecccc-eeEE
Confidence 7788999999998 4444
No 101
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.8e-25 Score=171.41 Aligned_cols=203 Identities=15% Similarity=0.196 Sum_probs=169.4
Q ss_pred EEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEE
Q 025649 4 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI 83 (250)
Q Consensus 4 iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 83 (250)
||.+..--.+..|. +|..+|.++.|++... +|++|+.+|+|++||++.++.++++. + |...+.++
T Consensus 54 L~~i~kp~~i~S~~-~hespIeSl~f~~~E~-LlaagsasgtiK~wDleeAk~vrtLt-g------------h~~~~~sv 118 (825)
T KOG0267|consen 54 LWAIGKPNAITSLT-GHESPIESLTFDTSER-LLAAGSASGTIKVWDLEEAKIVRTLT-G------------HLLNITSV 118 (825)
T ss_pred cccccCCchhheee-ccCCcceeeecCcchh-hhcccccCCceeeeehhhhhhhhhhh-c------------cccCccee
Confidence 55554444555678 9999999999999988 89999999999999999998888776 3 57889999
Q ss_pred ecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---eeeeeccCeeeeeecc
Q 025649 84 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSGGKRLHLDYS 160 (250)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 160 (250)
.|+| -+.+.+.|+.|+.+.+||.+..-+...... +...+..+.|+|+|++++.- .....++....+.+..
T Consensus 119 ~f~P------~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 119 DFHP------YGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred eecc------ceEEeccccccccceehhhhccCceeeecC-CcceeEEEeecCCCceeeccCCcceeeeecccccccccc
Confidence 9999 889999999999999999997666666665 55788999999999999842 2334455666677889
Q ss_pred ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC
Q 025649 161 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT 240 (250)
Q Consensus 161 ~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 240 (250)
|.+|.+.+..+.|+ |..-++++|+.|+++++||+++. +.+.........|.++.|.| ++..+++|..
T Consensus 192 f~~~e~~v~sle~h---p~e~Lla~Gs~d~tv~f~dletf---------e~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q 258 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFH---PLEVLLAPGSSDRTVRFWDLETF---------EVISSGKPETDGVRSLAFNP-DGKIVLSGEQ 258 (825)
T ss_pred cccccccccccccC---chhhhhccCCCCceeeeecccee---------EEeeccCCccCCceeeeecC-CceeeecCch
Confidence 99999999999999 78788999999999999999986 56656666677899999998 8888887765
Q ss_pred C
Q 025649 241 S 241 (250)
Q Consensus 241 d 241 (250)
+
T Consensus 259 ~ 259 (825)
T KOG0267|consen 259 I 259 (825)
T ss_pred h
Confidence 4
No 102
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.3e-24 Score=161.79 Aligned_cols=211 Identities=15% Similarity=0.174 Sum_probs=171.4
Q ss_pred CcEEEEccc--ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQ--HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~--~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|+.|||+.+ .+....+. .-.-...+++.+||.+ +.++|..||.|.|||+.+-..++.|+ + |++
T Consensus 488 tlsiWDLAapTprikaelt-ssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~Vrqfq-G------------htD 552 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELT-SSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQ-G------------HTD 552 (705)
T ss_pred eeeeeeccCCCcchhhhcC-CcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeeccc-C------------CCC
Confidence 688999974 44445555 4456788999999999 89999999999999999988888888 4 689
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC---eee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG---KRL 155 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 155 (250)
.+.|+.+++ +|..|-+|+-|++||.||+++++.+..-... ..|.++.++|++..++ +|..+.... ...
T Consensus 553 GascIdis~------dGtklWTGGlDntvRcWDlregrqlqqhdF~--SQIfSLg~cP~~dWla-vGMens~vevlh~sk 623 (705)
T KOG0639|consen 553 GASCIDISK------DGTKLWTGGLDNTVRCWDLREGRQLQQHDFS--SQIFSLGYCPTGDWLA-VGMENSNVEVLHTSK 623 (705)
T ss_pred CceeEEecC------CCceeecCCCccceeehhhhhhhhhhhhhhh--hhheecccCCCcccee-eecccCcEEEEecCC
Confidence 999999998 9999999999999999999998776554443 6899999999999999 665544321 122
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
...+.+.-|..-|.++.|. +.|+++++.+.|..+..|...-+... ....-.+.|.++.++. |.++|
T Consensus 624 p~kyqlhlheScVLSlKFa---~cGkwfvStGkDnlLnawrtPyGasi----------FqskE~SsVlsCDIS~-ddkyI 689 (705)
T KOG0639|consen 624 PEKYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYGASI----------FQSKESSSVLSCDISF-DDKYI 689 (705)
T ss_pred ccceeecccccEEEEEEec---ccCceeeecCchhhhhhccCccccce----------eeccccCcceeeeecc-CceEE
Confidence 2234566788999999999 89999999999999999998887422 1223456788888886 78899
Q ss_pred EEeeCCceEEEEeC
Q 025649 236 VVCDTSKVVKVYSI 249 (250)
Q Consensus 236 ~s~~~d~~i~vw~~ 249 (250)
+||+.|....||.+
T Consensus 690 VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 690 VTGSGDKKATVYEV 703 (705)
T ss_pred EecCCCcceEEEEE
Confidence 99999999999875
No 103
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.6e-24 Score=153.92 Aligned_cols=211 Identities=17% Similarity=0.164 Sum_probs=161.3
Q ss_pred eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649 12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML 91 (250)
Q Consensus 12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (250)
.+..|. ||.+.|.+++=+|..-..+++|+.||.|++||+.+..++.+++.+ .+.|.++.+.
T Consensus 58 Fv~~L~-gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH-------------~G~V~Gi~v~----- 118 (433)
T KOG0268|consen 58 FVGSLD-GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH-------------EGLVRGICVT----- 118 (433)
T ss_pred chhhcc-ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc-------------cCceeeEEec-----
Confidence 355677 999999999999988448999999999999999999999999844 6789999987
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-eeeeccCeeeeeeccccCccccEEE
Q 025649 92 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-ILDQSGGKRLHLDYSVGGHTAAASC 170 (250)
Q Consensus 92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~ 170 (250)
...+++++.|++|+.|-++.. ....+.. +..+..+.-+..+..+++.| ..++|+.....++..+.-....|.+
T Consensus 119 ---~~~~~tvgdDKtvK~wk~~~~-p~~tilg--~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 119 ---QTSFFTVGDDKTVKQWKIDGP-PLHTILG--KSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred ---ccceEEecCCcceeeeeccCC-cceeeec--cccccccccccccccccccCceeeecccccCCccceeecCCCceeE
Confidence 267888999999999998753 2222222 14555666666666777544 2555666666677788777788999
Q ss_pred EEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc---------------------------------cccceeeeeec
Q 025649 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS---------------------------------INNDLLIKNIN 217 (250)
Q Consensus 171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------------------------~~~~~~~~~~~ 217 (250)
+.|+| -.-..|+++.+|+.|.+||++....++.. --..++....+
T Consensus 193 vkfNp--vETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d 270 (433)
T KOG0268|consen 193 VKFNP--VETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD 270 (433)
T ss_pred EecCC--CcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcc
Confidence 99995 33457778889999999999987655310 00233456678
Q ss_pred cCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 218 LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 218 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
|.+.|.++.|+| .|+-|++||.|.+|+||.++
T Consensus 271 hvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 271 HVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred cceeEEEeccCC-CcchhccccccceEEEeecC
Confidence 999999999998 78899999999999999864
No 104
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.6e-24 Score=149.94 Aligned_cols=205 Identities=13% Similarity=0.168 Sum_probs=163.3
Q ss_pred eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649 11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM 90 (250)
Q Consensus 11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (250)
++++.|. ||.+.|..++.....+ .+.+++.|.+.+||.+++++++..+. + |.+.|+++.|++
T Consensus 139 ~lvre~~-GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~Y~-G------------H~GSVNsikfh~--- 200 (481)
T KOG0300|consen 139 RLVRELE-GHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLATYT-G------------HTGSVNSIKFHN--- 200 (481)
T ss_pred eehhhhc-ccccceeeehhhcCCc-ceeecccccceeEEeeccccceeeec-c------------cccceeeEEecc---
Confidence 4556677 9999999999888777 89999999999999999999999887 4 688999999998
Q ss_pred cCCCCCEEEEEeCCCeEEEEeC------CCce---------eEee------------------------ccCCCCCCccc
Q 025649 91 LDKTNKICVVAKGDGVVDVINI------ESEL---------NISR------------------------SKSTTKPLKGS 131 (250)
Q Consensus 91 ~~~~~~~l~~~~~d~~i~~~d~------~~~~---------~~~~------------------------~~~~~~~~~~~ 131 (250)
.+.++++++.|++-+||.. .... .... ....+...+.+
T Consensus 201 ---s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 201 ---SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ---ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 8999999999999999972 2100 0000 00011233344
Q ss_pred eeecccceeEEEeeeeee----ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccc
Q 025649 132 QSTSKVNIRDAEMEILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI 207 (250)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 207 (250)
..|-..|+.++ .++||. ++.+..+++..+.||....+.+.-+ |..+++++.+.|.+.++||++..-
T Consensus 278 ~dWL~gg~Q~v-TaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstH---ptQrLVvTsSrDtTFRLWDFReaI------ 347 (481)
T KOG0300|consen 278 CDWLAGGQQMV-TASWDRTANLWDVETGEVVNILTGHDSELTHCSTH---PTQRLVVTSSRDTTFRLWDFREAI------ 347 (481)
T ss_pred hhhhcCcceee-eeeccccceeeeeccCceeccccCcchhccccccC---CcceEEEEeccCceeEeccchhhc------
Confidence 44555666666 555554 4667888899999999999999888 888999999999999999999642
Q ss_pred ccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 208 NNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 208 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
..+..+.+|...|+++.|.- +..+++|+.|.+|++||++
T Consensus 348 --~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLr 386 (481)
T KOG0300|consen 348 --QSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLR 386 (481)
T ss_pred --ceeeeecccccceeEEEEec--CCceeecCCCceEEEeeec
Confidence 55678899999999999974 3469999999999999985
No 105
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.1e-23 Score=151.78 Aligned_cols=204 Identities=14% Similarity=0.113 Sum_probs=156.3
Q ss_pred eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC---ccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649 12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP---NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA 88 (250)
Q Consensus 12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 88 (250)
..+.+. .|++.|..+.||++|+ +|||++.|.+..+|++..... .+++. + |..+|.-+.|+|
T Consensus 216 t~qil~-~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl~~tlv-g------------h~~~V~yi~wSP- 279 (519)
T KOG0293|consen 216 TWQILQ-DHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKLKKTLV-G------------HSQPVSYIMWSP- 279 (519)
T ss_pred hhhhHh-hCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcceeeeeeee-c------------ccCceEEEEECC-
Confidence 345677 8999999999999999 999999999999999865443 33333 2 678999999999
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc--------------Ce-
Q 025649 89 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG--------------GK- 153 (250)
Q Consensus 89 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~- 153 (250)
|.++|++++.|..+.+||+.+|.............+.+.+|.|||..+++ |+-|... ..
T Consensus 280 -----DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~-Gs~dr~i~~wdlDgn~~~~W~gvr 353 (519)
T KOG0293|consen 280 -----DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT-GSPDRTIIMWDLDGNILGNWEGVR 353 (519)
T ss_pred -----CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe-cCCCCcEEEecCCcchhhcccccc
Confidence 99999999999999999999999887777766788999999999999883 3222110 00
Q ss_pred -----------eeeee-------------------ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649 154 -----------RLHLD-------------------YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV 203 (250)
Q Consensus 154 -----------~~~~~-------------------~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 203 (250)
..+.+ ..+-....+|++...| .+++++++.-.+..+.+||++..
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS---~d~k~~LvnL~~qei~LWDl~e~--- 427 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSIS---KDGKLALVNLQDQEIHLWDLEEN--- 427 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEc---CCCcEEEEEcccCeeEEeecchh---
Confidence 00000 0011234578888888 88888888888889999999864
Q ss_pred ecccccceeeeeeccCCc--eeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 204 QTSINNDLLIKNINLNKK--VNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.++..+.+|... +..-+|--.+..++++||.|++|+||+.
T Consensus 428 ------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 428 ------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred ------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEc
Confidence 666778888875 3344566556679999999999999985
No 106
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=5e-25 Score=170.04 Aligned_cols=201 Identities=17% Similarity=0.235 Sum_probs=170.0
Q ss_pred eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649 15 SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 94 (250)
Q Consensus 15 ~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (250)
.+- .|...|.++..-..++ .+++|+.|..+-+|.+...-.+-.+. + |...|.++.|++ .
T Consensus 23 ~~~-~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S~~-~------------hespIeSl~f~~------~ 81 (825)
T KOG0267|consen 23 EFV-AHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITSLT-G------------HESPIESLTFDT------S 81 (825)
T ss_pred hhh-hhhhhhceeeeeccce-eeccCCCceeeccccccCCchhheee-c------------cCCcceeeecCc------c
Confidence 344 7889999999866667 89999999999999986655554444 2 688999999998 8
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeeccCeeeeeeccccCccccEEEE
Q 025649 95 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVGGHTAAASCV 171 (250)
Q Consensus 95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 171 (250)
..+|++|+.+|+|++||++..+....+..+ ...+.++.|+|-+.+.+. .+.+..++.+..-+.+.+.+|...+.++
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vrtLtgh-~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVRTLTGH-LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL 160 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhhhhhcc-ccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEE
Confidence 899999999999999999988766655554 367888999999999962 3335556666677888999999999999
Q ss_pred EeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 172 AFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 172 ~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+|+ |+|+++++|++|..++|||+..+ +++..+..|++.+..+.++| ..-++++|+.|+++++||++
T Consensus 161 ~ls---P~Gr~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 161 RLS---PDGRWVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred eec---CCCceeeccCCcceeeeeccccc---------ccccccccccccccccccCc-hhhhhccCCCCceeeeeccc
Confidence 999 89999999999999999999998 78888899999999999998 55578889999999999985
No 107
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=5.4e-24 Score=154.56 Aligned_cols=208 Identities=15% Similarity=0.144 Sum_probs=158.8
Q ss_pred cEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 2 WQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 2 i~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
|++|++...+ .+.+|. |-.++|+.+.|.+++. ++++++.|+.+++|++...+...++. + |.+.
T Consensus 199 Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~-~~iAas~d~~~r~Wnvd~~r~~~TLs-G------------Htdk 263 (459)
T KOG0288|consen 199 IKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNK-HVIAASNDKNLRLWNVDSLRLRHTLS-G------------HTDK 263 (459)
T ss_pred hhhhhcccchhhhhhhhh-ccCCCcceeeecCCCc-eEEeecCCCceeeeeccchhhhhhhc-c------------cccc
Confidence 6789887555 778888 8899999999999999 89999999999999999999988887 4 6899
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----cCeee
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRL 155 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 155 (250)
|+++.|.. ....+++|+.|.+|++||+....+....... ..+..+..+ ...++ ++..|.. +....
T Consensus 264 Vt~ak~~~------~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~--~~~~~-SgH~DkkvRfwD~Rs~ 332 (459)
T KOG0288|consen 264 VTAAKFKL------SHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS--ISDVI-SGHFDKKVRFWDIRSA 332 (459)
T ss_pred eeeehhhc------cccceeeccccchhhhhhhhhhheecccccc--ccccceEec--ceeee-ecccccceEEEeccCC
Confidence 99999986 5555999999999999999987766654433 333333333 11111 3332222 22333
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec----cCCceeEEEecCCC
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN----LNKKVNWLCTTPTE 231 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~ 231 (250)
.+....+.+. .|+++..+ ++|..+++++.|.++.+.|+++.. ....+.. .....+.+.|+| +
T Consensus 333 ~~~~sv~~gg-~vtSl~ls---~~g~~lLsssRDdtl~viDlRt~e---------I~~~~sA~g~k~asDwtrvvfSp-d 398 (459)
T KOG0288|consen 333 DKTRSVPLGG-RVTSLDLS---MDGLELLSSSRDDTLKVIDLRTKE---------IRQTFSAEGFKCASDWTRVVFSP-D 398 (459)
T ss_pred ceeeEeecCc-ceeeEeec---cCCeEEeeecCCCceeeeeccccc---------EEEEeeccccccccccceeEECC-C
Confidence 4455666554 89999999 899999999999999999999973 3222221 122377888998 8
Q ss_pred CCeEEEeeCCceEEEEeC
Q 025649 232 SENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 232 ~~~l~s~~~d~~i~vw~~ 249 (250)
+.|+++||.||.|+||++
T Consensus 399 ~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSV 416 (459)
T ss_pred CceeeeccCCCcEEEEEc
Confidence 999999999999999986
No 108
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=2.2e-23 Score=147.45 Aligned_cols=219 Identities=13% Similarity=0.104 Sum_probs=158.6
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|+|.|+.++++...+. +|...|+.|.++|+.++++++||.|.+||+|++++..++..+- +...|.+.|.
T Consensus 117 IrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG----------G~egHrdeVL 185 (385)
T KOG1034|consen 117 IRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG----------GVEGHRDEVL 185 (385)
T ss_pred EEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec----------ccccccCcEE
Confidence 7999999999999999 9999999999999998899999999999999999999988875 3455899999
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC---------------------------CCCCccceee
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST---------------------------TKPLKGSQST 134 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---------------------------~~~~~~~~~~ 134 (250)
++.|++ ++.+|++++.|.+|++|++...+....++.. +...+.|+.|
T Consensus 186 SvD~~~------~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw 259 (385)
T KOG1034|consen 186 SVDFSL------DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW 259 (385)
T ss_pred EEEEcC------CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence 999998 9999999999999999999853321111100 0111222221
Q ss_pred cccceeEEE------eeeeee-ccCe----------eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEec
Q 025649 135 SKVNIRDAE------MEILDQ-SGGK----------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 197 (250)
Q Consensus 135 ~~~~~~~~~------~~~~~~-~~~~----------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~ 197 (250)
- |.++++ +..|.. ...+ ....+.++.-....|+-+.|+ +++.++.||.|...|.|.+||+
T Consensus 260 ~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~-~d~~~~~la~gnq~g~v~vwdL 336 (385)
T KOG1034|consen 260 F--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFA-FDPWQKMLALGNQSGKVYVWDL 336 (385)
T ss_pred H--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEe-ecHHHHHHhhccCCCcEEEEEC
Confidence 1 222221 112222 1111 112234455555667777776 4477899999999999999999
Q ss_pred CCCcceecccccceeeeeecc---CCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 198 SRFQGVQTSINNDLLIKNINL---NKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+..... ......| ...|...+|+. |+.+|+..+.|+.|.-||.
T Consensus 337 ~~~ep~--------~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 337 DNNEPP--------KCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCCCc--------cCceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 986432 1222222 34588888885 9999999999999999984
No 109
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3.6e-23 Score=144.82 Aligned_cols=111 Identities=11% Similarity=0.054 Sum_probs=79.5
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI 97 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (250)
...+.|.+|+|||....+++.+|-||+||+|+++. |..+...... +..++.+++|+. +|..
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~------------~~~PvL~v~Wsd------dgsk 86 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQS------------HDGPVLDVCWSD------DGSK 86 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhc------------cCCCeEEEEEcc------CCce
Confidence 56788999999996654778999999999999986 4544433323 678999999998 9999
Q ss_pred EEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccce--eEEEeeeeeec
Q 025649 98 CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI--RDAEMEILDQS 150 (250)
Q Consensus 98 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 150 (250)
+++|+.|+.+++||+.+++....... ...+..+.|-+... .|+ .|+||.+
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~~~v~~H--d~pvkt~~wv~~~~~~cl~-TGSWDKT 138 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQVSQVAAH--DAPVKTCHWVPGMNYQCLV-TGSWDKT 138 (347)
T ss_pred EEeeccCCceEEEEccCCCeeeeeec--ccceeEEEEecCCCcceeE-ecccccc
Confidence 99999999999999999864332211 24455555444333 222 4555443
No 110
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=1.1e-23 Score=143.88 Aligned_cols=171 Identities=19% Similarity=0.199 Sum_probs=138.7
Q ss_pred cEEEEcccce-eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 2 WQIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 2 i~iwd~~~~~-~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+||+|++..+ ....+. +|.+.|..+-|....+ .|++.++|++||+||.+++..++++.+. ..|
T Consensus 124 lrvfdln~p~App~E~~-ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~sL~~~--------------s~V 187 (334)
T KOG0278|consen 124 LRVFDLNRPKAPPKEIS-GHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQSLEFN--------------SPV 187 (334)
T ss_pred hhhhhccCCCCCchhhc-CCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEEEEecC--------------CCC
Confidence 5778876543 456788 9999999999998888 7888899999999999999999999844 679
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC----eeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG----KRLH 156 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 156 (250)
+++.+++ +|++|.++ ..+.|.+||..+...+...+.+ ..+.+.+.+|+-..++ .|..|.+.. ...+
T Consensus 188 tSlEvs~------dG~ilTia-~gssV~Fwdaksf~~lKs~k~P--~nV~SASL~P~k~~fV-aGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 188 TSLEVSQ------DGRILTIA-YGSSVKFWDAKSFGLLKSYKMP--CNVESASLHPKKEFFV-AGGEDFKVYKFDYNTGE 257 (334)
T ss_pred cceeecc------CCCEEEEe-cCceeEEeccccccceeeccCc--cccccccccCCCceEE-ecCcceEEEEEeccCCc
Confidence 9999998 88887766 4578999999998888777766 6788999999886666 555444421 1222
Q ss_pred eecc-ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649 157 LDYS-VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 201 (250)
Q Consensus 157 ~~~~-~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~ 201 (250)
.+.. -++|.++|.|+.|+ |+|...++||+||+|++|.+..++
T Consensus 258 Ei~~~nkgh~gpVhcVrFS---PdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 258 EIGSYNKGHFGPVHCVRFS---PDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred eeeecccCCCCceEEEEEC---CCCceeeccCCCceEEEEEecCCC
Confidence 2223 38999999999999 899999999999999999988764
No 111
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=2.8e-23 Score=154.99 Aligned_cols=200 Identities=16% Similarity=0.123 Sum_probs=144.9
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI 97 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (250)
||...++|.+|+|+.+..++|++.||++|+||+.+.+. +..++.. + .....-.++..+|+| +++.
T Consensus 266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k-~-------~~g~Rv~~tsC~~nr------dg~~ 331 (641)
T KOG0772|consen 266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK-P-------AGGKRVPVTSCAWNR------DGKL 331 (641)
T ss_pred CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec-c-------CCCcccCceeeecCC------Ccch
Confidence 89999999999999977899999999999999986543 3333311 0 011345678899998 9999
Q ss_pred EEEEeCCCeEEEEeCCCce--eEeeccCCCC--CCccceeecccceeEEE------eeeeeeccCeeeeeeccccCc--c
Q 025649 98 CVVAKGDGVVDVINIESEL--NISRSKSTTK--PLKGSQSTSKVNIRDAE------MEILDQSGGKRLHLDYSVGGH--T 165 (250)
Q Consensus 98 l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~h--~ 165 (250)
||+|+.||.|.+|+..+.. ........+. ..+.+++||++|++|++ ...||.... .+++....+- .
T Consensus 332 iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~--kkpL~~~tgL~t~ 409 (641)
T KOG0772|consen 332 IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF--KKPLNVRTGLPTP 409 (641)
T ss_pred hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc--ccchhhhcCCCcc
Confidence 9999999999999986532 2233333333 48999999999999995 233444332 2333333332 2
Q ss_pred ccEEEEEeecCCCCCcEEEEee------CCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649 166 AAASCVAFSMFGERGKYLISGG------NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 239 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 239 (250)
.+-+.+.|| |+.+++++|. ..|++.+||..+. +.+..+.-....|..+.|+|.-++ |+.|+
T Consensus 410 ~~~tdc~FS---Pd~kli~TGtS~~~~~~~g~L~f~d~~t~---------d~v~ki~i~~aSvv~~~WhpkLNQ-i~~gs 476 (641)
T KOG0772|consen 410 FPGTDCCFS---PDDKLILTGTSAPNGMTAGTLFFFDRMTL---------DTVYKIDISTASVVRCLWHPKLNQ-IFAGS 476 (641)
T ss_pred CCCCccccC---CCceEEEecccccCCCCCceEEEEeccce---------eeEEEecCCCceEEEEeecchhhh-eeeec
Confidence 234677899 8999999985 3568999999998 444444444677888999996555 66677
Q ss_pred CCceEEEE
Q 025649 240 TSKVVKVY 247 (250)
Q Consensus 240 ~d~~i~vw 247 (250)
.||.+++|
T Consensus 477 gdG~~~vy 484 (641)
T KOG0772|consen 477 GDGTAHVY 484 (641)
T ss_pred CCCceEEE
Confidence 78999987
No 112
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.4e-24 Score=172.87 Aligned_cols=219 Identities=13% Similarity=0.150 Sum_probs=172.2
Q ss_pred CcEEEEccc---c---eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcc
Q 025649 1 MWQIIDIRQ---H---CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQC 74 (250)
Q Consensus 1 ti~iwd~~~---~---~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 74 (250)
+|.+||... + ..+.+.+ .|++.|..+.|++...++|++|+.||.|.|||+.+.+...... ..
T Consensus 91 ~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-----------~~ 158 (1049)
T KOG0307|consen 91 NIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-----------SQ 158 (1049)
T ss_pred ceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----------CC
Confidence 377888764 2 3456677 8999999999999988799999999999999998755433331 11
Q ss_pred cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC-CCccceeecccceeEEEe---------
Q 025649 75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK-PLKGSQSTSKVNIRDAEM--------- 144 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------- 144 (250)
..++.|.+++|+. ...++|++++.+|.+.|||++..+.+..+..... ..+..++|+|++..-+.+
T Consensus 159 ~~~~eI~~lsWNr-----kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pv 233 (1049)
T KOG0307|consen 159 APPSEIKCLSWNR-----KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPV 233 (1049)
T ss_pred CCcccceEeccch-----hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCce
Confidence 1467899999997 4577899999999999999998876665544432 457789999986433322
Q ss_pred -eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649 145 -EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 223 (250)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (250)
..||.+. ...+++.+.+|...|.++.|++ .|.+++++++.|++|.+|+.+++ +.+..+....+.+.
T Consensus 234 iqlWDlR~--assP~k~~~~H~~GilslsWc~--~D~~lllSsgkD~~ii~wN~~tg---------Evl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 234 IQLWDLRF--ASSPLKILEGHQRGILSLSWCP--QDPRLLLSSGKDNRIICWNPNTG---------EVLGELPAQGNWCF 300 (1049)
T ss_pred eEeecccc--cCCchhhhcccccceeeeccCC--CCchhhhcccCCCCeeEecCCCc---------eEeeecCCCCccee
Confidence 2233322 2335677899999999999995 45589999999999999999998 77777777778899
Q ss_pred EEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 224 WLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 224 ~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.+.|+|.+...|+.++.||.|.||.+
T Consensus 301 dv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred eeeecCCCcchhhhheeccceeeeee
Confidence 99999999989999999999999986
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.6e-22 Score=140.85 Aligned_cols=213 Identities=13% Similarity=0.138 Sum_probs=154.1
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
++++||..+.++...++ |..++.+++|.++. .+++|+.||.|+.+|+.++.....-. |...+
T Consensus 36 slrlYdv~~~~l~~~~~--~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~~~~~~igt--------------h~~~i 97 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLKFK--HGAPLLDCAFADES--TIVTGGLDGQVRRYDLNTGNEDQIGT--------------HDEGI 97 (323)
T ss_pred cEEEEeccchhhhhhee--cCCceeeeeccCCc--eEEEeccCceEEEEEecCCcceeecc--------------CCCce
Confidence 47899999888888887 99999999999966 59999999999999999887554443 67899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE----eeeeeeccCeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE----MEILDQSGGKRLH 156 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 156 (250)
.++..++ ....+++|+.|++|++||.+........... ..|.++....+--.+++ +-.+|.+......
T Consensus 98 ~ci~~~~------~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~--kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 98 RCIEYSY------EVGCVISGSWDKTIKFWDPRNKVVVGTFDQG--KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred EEEEeec------cCCeEEEcccCccEEEEeccccccccccccC--ceEEEEeccCCEEEEeecCceEEEEEcccccchh
Confidence 9999998 7888999999999999999974444333333 35666665544433322 2234443332221
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC---------CceeEEEe
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN---------KKVNWLCT 227 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~ 227 (250)
. ..-..-+-.+.|+++. |++.-++.+|-||+|.+=.+......+ .....+..|. -+|++|+|
T Consensus 170 q-~reS~lkyqtR~v~~~---pn~eGy~~sSieGRVavE~~d~s~~~~-----skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 170 Q-RRESSLKYQTRCVALV---PNGEGYVVSSIEGRVAVEYFDDSEEAQ-----SKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred h-hccccceeEEEEEEEe---cCCCceEEEeecceEEEEccCCchHHh-----hhceeEEeeecccCCceEEEEeceeEe
Confidence 1 1112345678999999 788889999999999886666543222 1112333332 26999999
Q ss_pred cCCCCCeEEEeeCCceEEEEeC
Q 025649 228 TPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 228 ~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+|. .+.|+||+.||.|.+||+
T Consensus 241 hp~-~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 241 HPI-HGTFATGGSDGIVNIWDL 261 (323)
T ss_pred ccc-cceEEecCCCceEEEccC
Confidence 995 567999999999999996
No 114
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=4.8e-23 Score=151.49 Aligned_cols=220 Identities=14% Similarity=0.139 Sum_probs=157.3
Q ss_pred EcccceeeeeeccCCCCCeeeEEEcCCCC-eEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCCCcccCCCceeEE
Q 025649 6 DIRQHCLYKSLRAGHSSICSSVQFIPWKP-WEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHAI 83 (250)
Q Consensus 6 d~~~~~~~~~l~~~h~~~v~~l~~~~~~~-~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~ 83 (250)
|+.+-.....++ -+...|++++|+|... .++++|+.-|+|-+||+.+.+. ...+ .....|..+|.++
T Consensus 172 ~l~~~~~~~v~k-v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----------~~f~~hs~~Vs~l 240 (498)
T KOG4328|consen 172 DLDDYRILNVAK-VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----------YLFTPHSGPVSGL 240 (498)
T ss_pred ccccceecceeE-ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----------EEeccCCccccce
Confidence 334445556677 7889999999999775 5899999999999999963221 1111 1112267789999
Q ss_pred ecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC-CCCCCccceeecccceeEEEeeeee---eccCee-eeee
Q 025649 84 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDAEMEILD---QSGGKR-LHLD 158 (250)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~ 158 (250)
.|+| .+...+++.+.||+|++-|++.......... ........+.|+.+...++....+. ..+.+. ....
T Consensus 241 ~F~P-----~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 241 KFSP-----ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred EecC-----CChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence 9999 5778999999999999999987543322222 1224566677777665555332222 222221 1123
Q ss_pred ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649 159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 238 (250)
Q Consensus 159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 238 (250)
..+.-|+..|.+++++|. .-.+|+|+|.|++++|||++...... .++.....|...|.+..|+|.+|. |+|.
T Consensus 316 ~~~~lh~kKI~sv~~NP~--~p~~laT~s~D~T~kIWD~R~l~~K~-----sp~lst~~HrrsV~sAyFSPs~gt-l~TT 387 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALNPV--CPWFLATASLDQTAKIWDLRQLRGKA-----SPFLSTLPHRRSVNSAYFSPSGGT-LLTT 387 (498)
T ss_pred hhhhhhhcccceeecCCC--CchheeecccCcceeeeehhhhcCCC-----CcceecccccceeeeeEEcCCCCc-eEee
Confidence 456668889999999973 44789999999999999999864331 234566789999999999997776 9999
Q ss_pred eCCceEEEEeC
Q 025649 239 DTSKVVKVYSI 249 (250)
Q Consensus 239 ~~d~~i~vw~~ 249 (250)
+.|..|+|||.
T Consensus 388 ~~D~~IRv~ds 398 (498)
T KOG4328|consen 388 CQDNEIRVFDS 398 (498)
T ss_pred ccCCceEEeec
Confidence 99999999985
No 115
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.8e-23 Score=157.07 Aligned_cols=223 Identities=14% Similarity=0.080 Sum_probs=175.1
Q ss_pred CcEEEEcccc--eeeeeeccCCCCCeeeEEE-cCCCCeEEEEecCCCeEEEEEccCC--CCccceecCCCCCCCCCCccc
Q 025649 1 MWQIIDIRQH--CLYKSLRAGHSSICSSVQF-IPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 1 ti~iwd~~~~--~~~~~l~~~h~~~v~~l~~-~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~ 75 (250)
||++|+...+ -++.++. .|.+-|.|+++ -++.. ++|||+-|+.|.+||++++ +.+.++..- ........
T Consensus 96 TVK~W~~~~~~~~c~stir-~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~----t~~sl~sG 169 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCMSTIR-THKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNV----TVNSLGSG 169 (735)
T ss_pred eEEEeecccCcchhHhhhh-cccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhcccc----ccccCCCC
Confidence 6999999876 5778899 99999999999 67777 9999999999999999988 344444311 11122224
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeeccC
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGG 152 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 152 (250)
+...|++++.++ .+..+++|+..+.+++||.++.+.+..+..+ ...+..+..++||..+++ .|....|+.
T Consensus 170 ~k~siYSLA~N~------t~t~ivsGgtek~lr~wDprt~~kimkLrGH-TdNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 170 PKDSIYSLAMNQ------TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH-TDNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred CccceeeeecCC------cceEEEecCcccceEEeccccccceeeeecc-ccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 778999999998 8999999999999999999999988888844 589999999999999985 345566667
Q ss_pred eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649 153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
...+++.++..|+..|+++..+ |+-..+.+|+.||.|..=|+++.... ..+.....+|..+..+..+.
T Consensus 243 gqQrCl~T~~vH~e~VWaL~~~---~sf~~vYsG~rd~~i~~Tdl~n~~~~---------tlick~daPv~~l~~~~~~~ 310 (735)
T KOG0308|consen 243 GQQRCLATYIVHKEGVWALQSS---PSFTHVYSGGRDGNIYRTDLRNPAKS---------TLICKEDAPVLKLHLHEHDN 310 (735)
T ss_pred cccceeeeEEeccCceEEEeeC---CCcceEEecCCCCcEEecccCCchhh---------eEeecCCCchhhhhhccccC
Confidence 7778899999999999999999 88899999999999999999996322 12223334566665554333
Q ss_pred CeEEEeeCCceEEEEeC
Q 025649 233 ENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 233 ~~l~s~~~d~~i~vw~~ 249 (250)
. +-++..|+.|+-|..
T Consensus 311 ~-~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 311 S-VWVTTTDSSIKRWKL 326 (735)
T ss_pred C-ceeeeccccceecCC
Confidence 3 356667777877754
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.6e-24 Score=165.36 Aligned_cols=158 Identities=17% Similarity=0.229 Sum_probs=132.3
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccC---CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSK---GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 99 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 99 (250)
.+..+.|....+++|+|++..|.|.+||+.. .+.+..|. . |...++++.|++ ...++|+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-E------------H~Rs~~~ldfh~-----tep~ili 150 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN-E------------HERSANKLDFHS-----TEPNILI 150 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh-h------------hccceeeeeecc-----CCccEEE
Confidence 4567788865556999999999999999976 34444554 2 678999999998 5789999
Q ss_pred EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649 100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 179 (250)
Q Consensus 100 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 179 (250)
+|++||+|++||++..+.. .++.+-...|..|.|+| ..
T Consensus 151 SGSQDg~vK~~DlR~~~S~----------------------------------------~t~~~nSESiRDV~fsp--~~ 188 (839)
T KOG0269|consen 151 SGSQDGTVKCWDLRSKKSK----------------------------------------STFRSNSESIRDVKFSP--GY 188 (839)
T ss_pred ecCCCceEEEEeeeccccc----------------------------------------ccccccchhhhceeecc--CC
Confidence 9999999999999964422 24455667899999997 56
Q ss_pred CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 180 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 180 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+..|+++...|.+.+||++... .....+.+|.++|.++.|+| ++.+|||||+|+.|+|||+
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~--------r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPD--------RCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDM 249 (839)
T ss_pred CceEEEecCCceEEEeeccCch--------hHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEec
Confidence 8899999999999999999864 45567789999999999999 8899999999999999996
No 117
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.1e-22 Score=139.10 Aligned_cols=233 Identities=12% Similarity=0.103 Sum_probs=159.1
Q ss_pred CcEEEEcc----cceeeeeeccCCCCCeeeEEEcC--CCCeEEEEecCCCeEEEEEccCC--CC-ccceecCCCCCCCCC
Q 025649 1 MWQIIDIR----QHCLYKSLRAGHSSICSSVQFIP--WKPWEVISGGLDSKLVMWDFSKG--RP-NKIVNFGLPENNGNA 71 (250)
Q Consensus 1 ti~iwd~~----~~~~~~~l~~~h~~~v~~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~--~~-~~~~~~~~~~~~~~~ 71 (250)
+|+|||.+ +..+....+ .|.+.|..+.|.+ -|+ .+++|+.|+++.||.-... +. -..+. ...
T Consensus 36 ~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGq-vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv-------~~t 106 (361)
T KOG2445|consen 36 TVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQ-VVATCSYDRTVSIWEEQEKSEEAHGRRWV-------RRT 106 (361)
T ss_pred cEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccc-eEEEEecCCceeeeeecccccccccceeE-------EEE
Confidence 58999964 345667788 9999999999954 466 9999999999999986311 11 00110 001
Q ss_pred CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE------eecc------CCCCCCccceeeccc--
Q 025649 72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI------SRSK------STTKPLKGSQSTSKV-- 137 (250)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~------~~~~------~~~~~~~~~~~~~~~-- 137 (250)
.+.-....|+.+.|.|. .-|-.|++++.||.+|||+......+ .++. ........|+.|+|.
T Consensus 107 tl~DsrssV~DV~FaP~----hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~ 182 (361)
T KOG2445|consen 107 TLVDSRSSVTDVKFAPK----HLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRM 182 (361)
T ss_pred EeecCCcceeEEEecch----hcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccc
Confidence 11224678999999993 34788999999999999998763211 1111 223456778888874
Q ss_pred -ceeEEEeeeee------------ec-cCeeeeeeccccCccccEEEEEeecC-CCCCcEEEEeeCCCeEEEEecCCCcc
Q 025649 138 -NIRDAEMEILD------------QS-GGKRLHLDYSVGGHTAAASCVAFSMF-GERGKYLISGGNDKLVKVWDCSRFQG 202 (250)
Q Consensus 138 -~~~~~~~~~~~------------~~-~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~~~l~s~~~d~~i~iwd~~~~~~ 202 (250)
..+++ +|..+ .. ..+....+.++.+|..+|+.++|.|. ...-.+||+++.|| |+||.++....
T Consensus 183 ~~p~iA-vgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s 260 (361)
T KOG2445|consen 183 HEPLIA-VGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARS 260 (361)
T ss_pred cCceEE-EEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccc
Confidence 23444 44433 11 12244456678899999999999951 11235899999999 99999985221
Q ss_pred e-------e----cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 203 V-------Q----TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 203 ~-------~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
. . ..-.-+.+..+.+|.+.|+.+.|+- .|..|++.|.||.|++|..
T Consensus 261 ~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 261 AIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred hhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhh
Confidence 0 0 0001134456778999999999996 8999999999999999964
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=149.47 Aligned_cols=194 Identities=14% Similarity=0.175 Sum_probs=136.1
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|.+|.+.......... --.++|.+++-+|+|. +|+.|+..|.|.+|.+.+|..+..+.. |-..|+
T Consensus 63 l~vw~i~k~~~~~q~~-v~Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelssG~LL~v~~a-------------HYQ~IT 127 (476)
T KOG0646|consen 63 LHVWEILKKDQVVQYI-VLPGPVHALASSNLGY-FLLAGTISGNLYLWELSSGILLNVLSA-------------HYQSIT 127 (476)
T ss_pred ccccccCchhhhhhhc-ccccceeeeecCCCce-EEEeecccCcEEEEEeccccHHHHHHh-------------hcccee
Confidence 4567665443333111 3567899999999998 788888999999999999999988863 467899
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccc
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 161 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (250)
++.|+. |+.+|++|+.||.|.+|++..-... ......++++.+
T Consensus 128 cL~fs~------dgs~iiTgskDg~V~vW~l~~lv~a-------------------------------~~~~~~~p~~~f 170 (476)
T KOG0646|consen 128 CLKFSD------DGSHIITGSKDGAVLVWLLTDLVSA-------------------------------DNDHSVKPLHIF 170 (476)
T ss_pred EEEEeC------CCcEEEecCCCccEEEEEEEeeccc-------------------------------ccCCCccceeee
Confidence 999998 9999999999999999998631100 001122344556
Q ss_pred cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee-------------------------------------
Q 025649 162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ------------------------------------- 204 (250)
Q Consensus 162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~------------------------------------- 204 (250)
..|.-+|+.+...+ .+...+++|+|.|.++++||+..+..+.
T Consensus 171 ~~HtlsITDl~ig~-Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 171 SDHTLSITDLQIGS-GGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred ccCcceeEEEEecC-CCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence 66666666666551 1122456666666666666665543221
Q ss_pred -----------cccccceeeeeeccCC--ceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 205 -----------TSINNDLLIKNINLNK--KVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 205 -----------~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
..........+.+|.+ .|++++.+- ||..|++|+.||++.|||+
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEec
Confidence 0011234456778888 899999996 9999999999999999996
No 119
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.9e-22 Score=141.31 Aligned_cols=228 Identities=17% Similarity=0.211 Sum_probs=164.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|.|||+.|...-+.|. +|..+|++++||++|+ .|+|+|.|..|.+||+..|.+++.+.+..+ .....+|+...+
T Consensus 47 vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~rirf~sp----v~~~q~hp~k~n 120 (405)
T KOG1273|consen 47 VVIYDFDTFRIARMLS-AHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRIRFDSP----VWGAQWHPRKRN 120 (405)
T ss_pred EEEEEccccchhhhhh-ccccceeEEEecCCCC-EeeeecCCceeEEEeccCCCceeEEEccCc----cceeeeccccCC
Confidence 6799999999988999 9999999999999999 899999999999999999999999886622 122222222111
Q ss_pred ------------EEecCCC-------------------cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCcc
Q 025649 82 ------------AIAIPDA-------------------DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG 130 (250)
Q Consensus 82 ------------~~~~~~~-------------------~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 130 (250)
-+.|++. .++++.|+++++|...|.+.++|..+.++...++......+.
T Consensus 121 ~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK 200 (405)
T KOG1273|consen 121 KCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIK 200 (405)
T ss_pred eEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeee
Confidence 1112210 246778999999999999999999999888777766567888
Q ss_pred ceeecccceeEEE------eeeeeeccC------eeeeeeccccC--ccccEEEEEeecCCCCCcEEEEeeC-CCeEEEE
Q 025649 131 SQSTSKVNIRDAE------MEILDQSGG------KRLHLDYSVGG--HTAAASCVAFSMFGERGKYLISGGN-DKLVKVW 195 (250)
Q Consensus 131 ~~~~~~~~~~~~~------~~~~~~~~~------~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iw 195 (250)
++.++..|+.++. +...+..+. ...++.++++. .+-.-.++.|+ .+|.|++.|+. ...++||
T Consensus 201 ~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs---~dgeYv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 201 QIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS---GDGEYVCAGSARAHALYIW 277 (405)
T ss_pred EEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec---CCccEEEeccccceeEEEE
Confidence 9999999999883 222222211 01111222221 12234577888 89999988764 5689999
Q ss_pred ecCCCcceecccccceeeeeeccC-CceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 196 DCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 196 d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.-..| .+++.+.+.. .....+.|+|- ...+++- ..|.+++|..
T Consensus 278 E~~~G---------sLVKILhG~kgE~l~DV~whp~-rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 278 EKSIG---------SLVKILHGTKGEELLDVNWHPV-RPIIASI-ASGVVYIWAV 321 (405)
T ss_pred ecCCc---------ceeeeecCCchhheeecccccc-eeeeeec-cCCceEEEEe
Confidence 99998 6666666666 45778889984 3355555 6889999974
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.9e-22 Score=148.36 Aligned_cols=213 Identities=15% Similarity=0.195 Sum_probs=164.5
Q ss_pred eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc-ceecC--C--CCCCCCCCcccCCCceeEEecCC
Q 025649 13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK-IVNFG--L--PENNGNAGQCYNPAFVHAIAIPD 87 (250)
Q Consensus 13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~--~--~~~~~~~~~~~~~~~v~~~~~~~ 87 (250)
...+. .|.-+|.+++++|+++ +.++++.||+|.-|++.+++... .++.. . ...........|...+.+++++|
T Consensus 135 ~~~~~-~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 135 FRVIG-KHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred ceeec-cccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 45566 8999999999999999 89999999999999999887552 22210 0 00000000036788999999999
Q ss_pred CcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeeccCeeeeeeccccCc
Q 025649 88 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVGGH 164 (250)
Q Consensus 88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h 164 (250)
++++|++|+.|..|.||+.++.+.+..+..+ ...|.+++|-.....+++ ......+.......+.++-+|
T Consensus 213 ------Dgkylatgg~d~~v~Iw~~~t~ehv~~~~gh-r~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH 285 (479)
T KOG0299|consen 213 ------DGKYLATGGRDRHVQIWDCDTLEHVKVFKGH-RGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH 285 (479)
T ss_pred ------CCcEEEecCCCceEEEecCcccchhhccccc-ccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence 9999999999999999999998877775554 588999999887666662 122333445566677789999
Q ss_pred cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649 165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV 244 (250)
Q Consensus 165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 244 (250)
...|.++... ..++.+-.|+.|+++++|++... ....+.+|.+.+-+++|.. ...|++||.||.|
T Consensus 286 qd~v~~IdaL---~reR~vtVGgrDrT~rlwKi~ee----------sqlifrg~~~sidcv~~In--~~HfvsGSdnG~I 350 (479)
T KOG0299|consen 286 QDGVLGIDAL---SRERCVTVGGRDRTVRLWKIPEE----------SQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSI 350 (479)
T ss_pred ccceeeechh---cccceEEeccccceeEEEecccc----------ceeeeeCCCCCeeeEEEec--ccceeeccCCceE
Confidence 9999999887 66666667779999999999653 2235678888999999984 4589999999999
Q ss_pred EEEeC
Q 025649 245 KVYSI 249 (250)
Q Consensus 245 ~vw~~ 249 (250)
.+|++
T Consensus 351 aLWs~ 355 (479)
T KOG0299|consen 351 ALWSL 355 (479)
T ss_pred EEeee
Confidence 99986
No 121
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=1.3e-22 Score=154.90 Aligned_cols=228 Identities=15% Similarity=0.163 Sum_probs=156.7
Q ss_pred CcEEEEcccceeeee--eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC--ccce-------ecCCCCCC-
Q 025649 1 MWQIIDIRQHCLYKS--LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIV-------NFGLPENN- 68 (250)
Q Consensus 1 ti~iwd~~~~~~~~~--l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~-------~~~~~~~~- 68 (250)
|+++||++++++... +. ||...|.+++|.|..+..|++|+.||.+.|||++-... ...+ ..+.+...
T Consensus 123 T~r~Wdvk~s~l~G~~~~~-GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 123 TIRPWDVKTSRLVGGRLNL-GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred eeeeeeeccceeecceeec-ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 689999999998877 77 99999999999999988999999999999999974331 0000 00100000
Q ss_pred ----CCCCcccCCCc----eeEEecCCCcccCCCCCEEEEEeC-CCeEEEEeCCCceeEeeccCC----------CCCCc
Q 025649 69 ----GNAGQCYNPAF----VHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKST----------TKPLK 129 (250)
Q Consensus 69 ----~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~----------~~~~~ 129 (250)
.......+... |+.+.|- |...|++++. |+.|+|||++........... ....+
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~fk-------De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~ 274 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLFK-------DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ 274 (720)
T ss_pred hhhccccccccccCceeeeeEEEEEe-------ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee
Confidence 00111122223 3444444 7888888887 999999999986544332211 12345
Q ss_pred cceeecccceeEEEeeeeeecc------CeeeeeeccccCcccc---EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649 130 GSQSTSKVNIRDAEMEILDQSG------GKRLHLDYSVGGHTAA---ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~h~~~---v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~ 200 (250)
.++..+..|.++++.+. |..+ .....++..+.++... +.+ ..+ |++.++++|+.|...++|.+.+.
T Consensus 275 ~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~lS---pd~~~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-ELS---PDDCSLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred EEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeee-ecC---CCCceEeccCCCcceeeeeecCc
Confidence 66777777888884433 4432 1222334444444322 222 235 89999999999999999999987
Q ss_pred cceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 201 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
. .....+.+|...|++++|.|..-.-++++++|..+++|++
T Consensus 350 e--------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 350 E--------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred c--------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 4 3445678999999999999866556889999999999997
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=2.4e-22 Score=154.70 Aligned_cols=208 Identities=13% Similarity=0.206 Sum_probs=166.6
Q ss_pred CcEEEEcccceeee--eeccCCCCCeee-EEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649 1 MWQIIDIRQHCLYK--SLRAGHSSICSS-VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 1 ti~iwd~~~~~~~~--~l~~~h~~~v~~-l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|+++|+-..++.+. .+. +|.+.|.. +++-+..++.|++|+.|..+.+|......++..++ + |.
T Consensus 36 t~~vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk-g------------H~ 101 (745)
T KOG0301|consen 36 TVKVWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK-G------------HK 101 (745)
T ss_pred ceeeeeccCcccccceecc-cCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhh-c------------cc
Confidence 57899976665544 355 78888877 88887444579999999999999999999999888 4 68
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec--cCeee
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS--GGKRL 155 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 155 (250)
..|.++.... ++. +++|+.|.++++|-... +... ...+...++.++.-|++.++ .|+.|.. ..+..
T Consensus 102 snVC~ls~~~------~~~-~iSgSWD~TakvW~~~~--l~~~-l~gH~asVWAv~~l~e~~~v--TgsaDKtIklWk~~ 169 (745)
T KOG0301|consen 102 SNVCSLSIGE------DGT-LISGSWDSTAKVWRIGE--LVYS-LQGHTASVWAVASLPENTYV--TGSADKTIKLWKGG 169 (745)
T ss_pred cceeeeecCC------cCc-eEecccccceEEecchh--hhcc-cCCcchheeeeeecCCCcEE--eccCcceeeeccCC
Confidence 8999999875 555 99999999999998754 2222 33445788999999998444 3444443 34556
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
+.+++|.+|..-|..+++- ++ ..|++++.||.|++|++.. +.+..+.+|++-|+++.... +++.+
T Consensus 170 ~~l~tf~gHtD~VRgL~vl---~~-~~flScsNDg~Ir~w~~~g----------e~l~~~~ghtn~vYsis~~~-~~~~I 234 (745)
T KOG0301|consen 170 TLLKTFSGHTDCVRGLAVL---DD-SHFLSCSNDGSIRLWDLDG----------EVLLEMHGHTNFVYSISMAL-SDGLI 234 (745)
T ss_pred chhhhhccchhheeeeEEe---cC-CCeEeecCCceEEEEeccC----------ceeeeeeccceEEEEEEecC-CCCeE
Confidence 7788999999999999998 44 5688999999999999954 77888999999999999665 56689
Q ss_pred EEeeCCceEEEEeC
Q 025649 236 VVCDTSKVVKVYSI 249 (250)
Q Consensus 236 ~s~~~d~~i~vw~~ 249 (250)
++++.|+++++|+.
T Consensus 235 vs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 235 VSTGEDRTLRIWKK 248 (745)
T ss_pred EEecCCceEEEeec
Confidence 99999999999974
No 123
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=7.3e-22 Score=154.93 Aligned_cols=97 Identities=10% Similarity=0.132 Sum_probs=85.3
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
++||++++++.+.+++ ++.+.|+++.-+|--. .++.|..+|+|.+++++.++.+.+|+.. .+.|+
T Consensus 184 lql~Nvrt~K~v~~f~-~~~s~IT~ieqsPaLD-VVaiG~~~G~ViifNlK~dkil~sFk~d-------------~g~Vt 248 (910)
T KOG1539|consen 184 LQLWNVRTGKVVYTFQ-EFFSRITAIEQSPALD-VVAIGLENGTVIIFNLKFDKILMSFKQD-------------WGRVT 248 (910)
T ss_pred EEEEEeccCcEEEEec-ccccceeEeccCCcce-EEEEeccCceEEEEEcccCcEEEEEEcc-------------cccee
Confidence 6899999999999999 9999999999999888 8999999999999999999999999822 48999
Q ss_pred EEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCCceeEe
Q 025649 82 AIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNIS 119 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~ 119 (250)
+++|.. ||+ .+++|+..|.+.+||++..+...
T Consensus 249 slSFrt------DG~p~las~~~~G~m~~wDLe~kkl~~ 281 (910)
T KOG1539|consen 249 SLSFRT------DGNPLLASGRSNGDMAFWDLEKKKLIN 281 (910)
T ss_pred EEEecc------CCCeeEEeccCCceEEEEEcCCCeeee
Confidence 999997 776 55666777999999998765443
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.8e-23 Score=139.54 Aligned_cols=210 Identities=16% Similarity=0.167 Sum_probs=157.9
Q ss_pred eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC---ccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649 14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP---NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM 90 (250)
Q Consensus 14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (250)
+++...|++.|.++...-.|+ .|+||+.|++|+|+..+++.. +.++. + |..+|..++|.-
T Consensus 4 q~idt~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~ll~~L~-G------------h~GPVwqv~wah--- 66 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSKLLAELT-G------------HSGPVWKVAWAH--- 66 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCceeeeEec-C------------CCCCeeEEeecc---
Confidence 344448999999999988899 899999999999999986543 33343 3 789999999953
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCCceeEee-ccCCCCCCccceeecccc--eeEEEeeeeeeccC-------eeeeeecc
Q 025649 91 LDKTNKICVVAKGDGVVDVINIESELNISR-SKSTTKPLKGSQSTSKVN--IRDAEMEILDQSGG-------KRLHLDYS 160 (250)
Q Consensus 91 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~ 160 (250)
+.-|.+||+++.||.|.||.-++++-.+. ....+...+.+++|-|.+ ..|+ .++.|+.+. ..-...+.
T Consensus 67 -Pk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~La-casSDG~vsvl~~~~~g~w~t~ki 144 (299)
T KOG1332|consen 67 -PKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLA-CASSDGKVSVLTYDSSGGWTTSKI 144 (299)
T ss_pred -cccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEE-EeeCCCcEEEEEEcCCCCccchhh
Confidence 25699999999999999999998854332 334456889999999864 4444 444444421 11112234
Q ss_pred ccCccccEEEEEeecCCCCC-----------cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649 161 VGGHTAAASCVAFSMFGERG-----------KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 229 (250)
Q Consensus 161 ~~~h~~~v~~~~~~p~~~~~-----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 229 (250)
...|.-.|+++.|.|-...| +.|++|+.|..|+||+..++.- .+-..+.+|.+.|..++|.|
T Consensus 145 ~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w-------~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 145 VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW-------KLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch-------hhhhhhhhcchhhhhhhhcc
Confidence 56899999999999632234 5699999999999999998632 22235789999999999999
Q ss_pred CCC---CeEEEeeCCceEEEEeC
Q 025649 230 TES---ENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 230 ~~~---~~l~s~~~d~~i~vw~~ 249 (250)
..| ..|++++.||++.||..
T Consensus 218 ~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 218 SVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred ccCCCceeeEEecCCCcEEEEEe
Confidence 543 36999999999999964
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=4.3e-22 Score=153.29 Aligned_cols=204 Identities=16% Similarity=0.151 Sum_probs=160.5
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|.+|.+.+.+++..|+ +|...|.+++...++. ++|||.|.++++|.. +++...++ + |+..|
T Consensus 82 ~i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~--~iSgSWD~TakvW~~--~~l~~~l~-g------------H~asV 143 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGT--LISGSWDSTAKVWRI--GELVYSLQ-G------------HTASV 143 (745)
T ss_pred eEEEEecCCCCchhhhh-ccccceeeeecCCcCc--eEecccccceEEecc--hhhhcccC-C------------cchhe
Confidence 46789999999999999 9999999999888875 999999999999986 44444554 3 78999
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE--eeeeeeccCeeeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE--MEILDQSGGKRLHLD 158 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 158 (250)
+++..-| ++ .+++|+.|++|++|.- ++.+..+.. +...++.+++-+++.++.. .|....+.. ..+++
T Consensus 144 WAv~~l~------e~-~~vTgsaDKtIklWk~--~~~l~tf~g-HtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l 212 (745)
T KOG0301|consen 144 WAVASLP------EN-TYVTGSADKTIKLWKG--GTLLKTFSG-HTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVL 212 (745)
T ss_pred eeeeecC------CC-cEEeccCcceeeeccC--Cchhhhhcc-chhheeeeEEecCCCeEeecCCceEEEEec-cCcee
Confidence 9999987 55 8999999999999987 455566666 4578899999888777653 222223332 45577
Q ss_pred ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649 159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 238 (250)
Q Consensus 159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 238 (250)
.++.+|..-|++++.. .++..++++++|++++||+.... ...+.-....|+++.+.+ +|+ |++|
T Consensus 213 ~~~~ghtn~vYsis~~---~~~~~Ivs~gEDrtlriW~~~e~-----------~q~I~lPttsiWsa~~L~-NgD-Ivvg 276 (745)
T KOG0301|consen 213 LEMHGHTNFVYSISMA---LSDGLIVSTGEDRTLRIWKKDEC-----------VQVITLPTTSIWSAKVLL-NGD-IVVG 276 (745)
T ss_pred eeeeccceEEEEEEec---CCCCeEEEecCCceEEEeecCce-----------EEEEecCccceEEEEEee-CCC-EEEe
Confidence 8899999999999977 67889999999999999987732 222223334788888876 665 8999
Q ss_pred eCCceEEEEeC
Q 025649 239 DTSKVVKVYSI 249 (250)
Q Consensus 239 ~~d~~i~vw~~ 249 (250)
+.||.|+||..
T Consensus 277 ~SDG~VrVfT~ 287 (745)
T KOG0301|consen 277 GSDGRVRVFTV 287 (745)
T ss_pred ccCceEEEEEe
Confidence 99999999964
No 126
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-22 Score=154.31 Aligned_cols=175 Identities=19% Similarity=0.207 Sum_probs=147.2
Q ss_pred CcEEEEcccceeeee-eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~-l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
.|..+|+...+.... +. +|...|..++|++++. +||+|+.|+.+.|||....+++..+. + |.+.
T Consensus 281 ~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~-~------------H~aA 345 (484)
T KOG0305|consen 281 KILNHDVRISQHVVSTLQ-GHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFT-E------------HTAA 345 (484)
T ss_pred cEEEEEEecchhhhhhhh-cccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEe-c------------ccee
Confidence 367788887665555 77 9999999999999999 99999999999999997767666665 3 6899
Q ss_pred eeEEecCCCcccCCCCCEEEEEe--CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe-ee----eeeccC
Q 025649 80 VHAIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM-EI----LDQSGG 152 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~ 152 (250)
|.+++|+| ....+||+|+ .|+.|++||..++..+..+... ..|..+.|++..+.+++. |. ...+..
T Consensus 346 VKA~awcP-----~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg--sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 346 VKALAWCP-----WQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG--SQVCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred eeEeeeCC-----CccCceEEcCCCcccEEEEEEcCCCcEecccccC--CceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 99999999 5788999985 6999999999999988777665 799999999999888752 22 122334
Q ss_pred eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649 153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~ 200 (250)
...+.+..+.+|...|..++++ |+|..+++|+.|.++++|++-..
T Consensus 419 ps~~~~~~l~gH~~RVl~la~S---Pdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 419 PSMKLVAELLGHTSRVLYLALS---PDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cccceeeeecCCcceeEEEEEC---CCCCEEEEecccCcEEeccccCC
Confidence 4566778899999999999999 89999999999999999999874
No 127
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1e-22 Score=154.57 Aligned_cols=222 Identities=16% Similarity=0.129 Sum_probs=148.5
Q ss_pred eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCC-------------------------
Q 025649 12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE------------------------- 66 (250)
Q Consensus 12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~------------------------- 66 (250)
+...++ ||++.|.+|+..|.|. .|++|+.||+|+||.+.+|++++++.+...-
T Consensus 392 ~~lvyr-GHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYR-GHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEe-ccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 345677 9999999999999999 7999999999999999999998887643100
Q ss_pred -------------------C---CC-------------------CCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC-
Q 025649 67 -------------------N---NG-------------------NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD- 104 (250)
Q Consensus 67 -------------------~---~~-------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d- 104 (250)
. .. ......|+..|..+.|+. .|.+|++...+
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr------kGDYlatV~~~~ 543 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR------KGDYLATVMPDS 543 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec------CCceEEEeccCC
Confidence 0 00 001111333444444444 67777666442
Q ss_pred --CeEEEEeCCCce-----------------------------------------eEeeccCCCCCCccceeecccceeE
Q 025649 105 --GVVDVINIESEL-----------------------------------------NISRSKSTTKPLKGSQSTSKVNIRD 141 (250)
Q Consensus 105 --~~i~~~d~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (250)
..|.|+++.... ....+.. ....+..++++|.|..+
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~t-g~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLT-GSKWISSMSIHPNGDNL 622 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhc-CCeeeeeeeecCCCCeE
Confidence 355566554321 1111111 12457778899988877
Q ss_pred EEeeeeeecc-----CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee
Q 025649 142 AEMEILDQSG-----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 216 (250)
Q Consensus 142 ~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 216 (250)
+ .++.+... ....++.+++.-|...+++|+|+ +.-.++++|+.||++.||.-.-...+....---++..+.
T Consensus 623 i-~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H---~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~ 698 (733)
T KOG0650|consen 623 I-LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFH---KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR 698 (733)
T ss_pred E-EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhc---cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence 7 55544432 12334567888899999999999 778899999999999999644322110000013456677
Q ss_pred ccCCc----eeEEEecCCCCCeEEEeeCCceEEEE
Q 025649 217 NLNKK----VNWLCTTPTESENLVVCDTSKVVKVY 247 (250)
Q Consensus 217 ~~~~~----v~~~~~~~~~~~~l~s~~~d~~i~vw 247 (250)
+|... |....|+| ..-+|++++.||+|++|
T Consensus 699 gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 699 GHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLF 732 (733)
T ss_pred CceeecccceEeecccC-CCceEEecCCCceEEee
Confidence 88766 88899999 55689999999999998
No 128
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=1.7e-21 Score=135.88 Aligned_cols=222 Identities=14% Similarity=0.062 Sum_probs=167.4
Q ss_pred eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649 11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 89 (250)
Q Consensus 11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (250)
+++..|...+-+.|.|+.|.|++. .|++-. |..|.+|++..+.. +..+... ....+....++-+|+|
T Consensus 113 E~v~~Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss--------~s~e~~~~ftsg~Wsp-- 180 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSS--------ESAEMRHSFTSGAWSP-- 180 (370)
T ss_pred hHhhcCCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeeccc--------ccccccceecccccCC--
Confidence 445556545667999999999998 677665 88999999987765 3333321 0111455677888998
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----cc-CeeeeeeccccCc
Q 025649 90 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SG-GKRLHLDYSVGGH 164 (250)
Q Consensus 90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~h 164 (250)
+.+++.+++. .|+++..||+++......+...+...+..+.|+|+-++++..+..|+ ++ +....++.++.+|
T Consensus 181 --HHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H 257 (370)
T KOG1007|consen 181 --HHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH 257 (370)
T ss_pred --CCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC
Confidence 4578888776 67999999999988888888888899999999999888875443333 22 2345578899999
Q ss_pred cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee----------------ccc----ccceeeeeeccCCceeE
Q 025649 165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ----------------TSI----NNDLLIKNINLNKKVNW 224 (250)
Q Consensus 165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----------------~~~----~~~~~~~~~~~~~~v~~ 224 (250)
...|.++.|+| ...+++++|+.|..|.+|...+-...+ ... ....+..+..|+..|++
T Consensus 258 sHWvW~VRfn~--~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~ 335 (370)
T KOG1007|consen 258 SHWVWAVRFNP--EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA 335 (370)
T ss_pred ceEEEEEEecC--ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEE
Confidence 99999999997 456899999999999999765432110 000 12334577889999999
Q ss_pred EEecCCCCCeEEEeeCCceEEEEeC
Q 025649 225 LCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 225 ~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
++|++.|+-.||+-+.||.+.|=++
T Consensus 336 ~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 336 LAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred EeeccCCCeeEEEeccCceEEeecC
Confidence 9999999999999999999877544
No 129
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-20 Score=127.20 Aligned_cols=216 Identities=13% Similarity=0.101 Sum_probs=153.7
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCC----CCcccCCCceeEEecCCCcccCCCC
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN----AGQCYNPAFVHAIAIPDADMLDKTN 95 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~ 95 (250)
.+..|.+++|+|.|. +.+.|+...+.++--...-..++.-. .....++ ..-.-|...|+|.+|+| +|
T Consensus 31 dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~h--ea~~~pp~v~~kr~khhkgsiyc~~ws~------~g 101 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAH--EAAKQPPSVLCKRNKHHKGSIYCTAWSP------CG 101 (350)
T ss_pred chhheeeEEecCCCc-eEEeccCCceEEEEccccccCccccc--ccccCCCeEEeeeccccCccEEEEEecC------cc
Confidence 567899999999999 89999999999987543221111000 0000000 01122778999999999 99
Q ss_pred CEEEEEeCCCeEEEEeCCCceeEee----ccCCCCCCccceeeccc----ceeEEEeeeeee----ccCeeeeeeccccC
Q 025649 96 KICVVAKGDGVVDVINIESELNISR----SKSTTKPLKGSQSTSKV----NIRDAEMEILDQ----SGGKRLHLDYSVGG 163 (250)
Q Consensus 96 ~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~ 163 (250)
.++++|+.|++|++.-.+....... ....+...+..++|-.+ +..+++.|.-|. .+....+.++.+.+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 9999999999999987765433221 12234577888888543 556665333332 23456667788999
Q ss_pred ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee---------------------------------------
Q 025649 164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ--------------------------------------- 204 (250)
Q Consensus 164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------------------------------------- 204 (250)
|.+.|.++- + =+|-++++|+.|.+|++||++-..++.
T Consensus 182 htghilaly-s---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 182 HTGHILALY-S---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred CcccEEEEE-E---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 999988773 3 357899999999999999997654432
Q ss_pred -cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 205 -TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 205 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.+..+.+++.+..|+..|.++.|+| ...++++|+.|.+|++=|+
T Consensus 258 ydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 258 YDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred EEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeec
Confidence 1234567778889999999999998 7789999999999999876
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.9e-21 Score=135.17 Aligned_cols=200 Identities=16% Similarity=0.263 Sum_probs=148.2
Q ss_pred eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649 13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD 92 (250)
Q Consensus 13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 92 (250)
..++. |.. -.|+.|++.|. +||+|..||.|.|||+.+...-+.+.. |..+|.+++|++
T Consensus 18 ~~tld--~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsa-------------H~~pi~sl~WS~----- 75 (405)
T KOG1273|consen 18 THTLD--NPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLSA-------------HVRPITSLCWSR----- 75 (405)
T ss_pred ceecc--CCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhhc-------------cccceeEEEecC-----
Confidence 34555 233 68999999999 999999999999999998876666652 578999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc-----Ceeeeeecccc--Ccc
Q 025649 93 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG-----GKRLHLDYSVG--GHT 165 (250)
Q Consensus 93 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~h~ 165 (250)
+|+.|++++.|..|.+||+..|....++... .++....|+|..+..+.+...+..- ....+.+-... +..
T Consensus 76 -dgr~LltsS~D~si~lwDl~~gs~l~rirf~--spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 76 -DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD--SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL 152 (405)
T ss_pred -CCCEeeeecCCceeEEEeccCCCceeEEEcc--CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc
Confidence 9999999999999999999999988888776 7899999998654443222222110 00111000000 111
Q ss_pred -ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC-CceeEEEecCCCCCeEEEeeCCce
Q 025649 166 -AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCDTSKV 243 (250)
Q Consensus 166 -~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~ 243 (250)
....+..|. +.|+++++|...|.+.++|..+. +++..+.-.. ..|..+.++- .|+.|+.-+.|+.
T Consensus 153 n~sas~~~fd---r~g~yIitGtsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRv 219 (405)
T KOG1273|consen 153 NSSASHGVFD---RRGKYIITGTSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRV 219 (405)
T ss_pred cccccccccc---CCCCEEEEecCcceEEEEecchh---------eeeeeeeechheeeeEEEEec-cCcEEEEecCCce
Confidence 112233566 88999999999999999999998 4444444444 6788888875 8999999999999
Q ss_pred EEEEeCC
Q 025649 244 VKVYSIS 250 (250)
Q Consensus 244 i~vw~~~ 250 (250)
|+.|+++
T Consensus 220 IR~ye~~ 226 (405)
T KOG1273|consen 220 IRTYEIS 226 (405)
T ss_pred EEEEehh
Confidence 9999863
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=1.1e-20 Score=140.93 Aligned_cols=221 Identities=14% Similarity=0.065 Sum_probs=161.3
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCC------------CC--
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL------------PE-- 66 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~------------~~-- 66 (250)
+|.||+..+.+..+... .|.+.|.+++...+|. |++|+.|..|..|| ..-+.++..+.+. ++
T Consensus 268 ~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~ 343 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT--LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDIL 343 (626)
T ss_pred eEEEEeCCCceEEeEee-ecCCceEEEEEecCcc--EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEE
Confidence 47899999999988888 9999999999999996 77799999999999 3333333322111 00
Q ss_pred --------------CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccce
Q 025649 67 --------------NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ 132 (250)
Q Consensus 67 --------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 132 (250)
..-......|.+....++.+| +..++++++.|+.+++|+ ..+........ .+..++
T Consensus 344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp------s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~--d~~~~~ 413 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP------SKNQLLTCGQDKHVRLWN--DHKLEWTKIIE--DPAECA 413 (626)
T ss_pred EeeccceEEEeeecCCceEEEEecccceeeEEcCC------ChhheeeccCcceEEEcc--CCceeEEEEec--CceeEe
Confidence 000012233556777888888 899999999999999999 44444333332 678899
Q ss_pred eecccceeEEE---eeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccc
Q 025649 133 STSKVNIRDAE---MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN 209 (250)
Q Consensus 133 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 209 (250)
.|+|.| .++. .|.|-..+.+....+.. .....++++++|+ |+|.+||.|+.|+.|+||-+.....
T Consensus 414 ~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~-~~d~~~ls~v~ys---p~G~~lAvgs~d~~iyiy~Vs~~g~------- 481 (626)
T KOG2106|consen 414 DFHPSG-VVAVGTATGRWFVLDTETQDLVTI-HTDNEQLSVVRYS---PDGAFLAVGSHDNHIYIYRVSANGR------- 481 (626)
T ss_pred eccCcc-eEEEeeccceEEEEecccceeEEE-EecCCceEEEEEc---CCCCEEEEecCCCeEEEEEECCCCc-------
Confidence 999999 5552 34444444444333333 2337889999999 8999999999999999998876532
Q ss_pred ceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 210 DLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
...+.-+.+.++|+.+.|++ |++++.+-+-|-.|..|.
T Consensus 482 ~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 482 KYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEEc
Confidence 22233344558999999997 999999999999999994
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=7.3e-21 Score=149.41 Aligned_cols=213 Identities=16% Similarity=0.173 Sum_probs=164.6
Q ss_pred cEEEEccccee-eeeecc----CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649 2 WQIIDIRQHCL-YKSLRA----GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 2 i~iwd~~~~~~-~~~l~~----~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
++-|+..+... ...|.. .-...+++++.++.|. +.+.|...|+|-+|++++|.....+- ....|
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQSGi~r~sf~----------~~~ah 492 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQSGIHRKSFG----------DSPAH 492 (910)
T ss_pred EEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEcccCeeecccc----------cCccc
Confidence 46788775544 334440 1236899999999999 88899999999999999998777762 01126
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccC
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGG 152 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 152 (250)
...|.+++... -++.+++++.+|.+++||......+...... ..+.++.++.....++ +...+. .+.
T Consensus 493 ~~~V~gla~D~------~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~--~~~~~iv~hr~s~l~a-~~~ddf~I~vvD~ 563 (910)
T KOG1539|consen 493 KGEVTGLAVDG------TNRLLVSAGADGILKFWDFKKKVLKKSLRLG--SSITGIVYHRVSDLLA-IALDDFSIRVVDV 563 (910)
T ss_pred cCceeEEEecC------CCceEEEccCcceEEEEecCCcceeeeeccC--CCcceeeeeehhhhhh-hhcCceeEEEEEc
Confidence 78999999876 7889999999999999999987766655554 5667777777666665 222222 233
Q ss_pred eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649 153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
...+.++.|.+|.+.|+.++|| |+|++|++++.|++|++||+.++ .++ .......++..+.++| +|
T Consensus 564 ~t~kvvR~f~gh~nritd~~FS---~DgrWlisasmD~tIr~wDlpt~---------~lI-D~~~vd~~~~sls~SP-ng 629 (910)
T KOG1539|consen 564 VTRKVVREFWGHGNRITDMTFS---PDGRWLISASMDSTIRTWDLPTG---------TLI-DGLLVDSPCTSLSFSP-NG 629 (910)
T ss_pred hhhhhhHHhhccccceeeeEeC---CCCcEEEEeecCCcEEEEeccCc---------cee-eeEecCCcceeeEECC-CC
Confidence 4445678899999999999999 99999999999999999999997 333 3345667889999998 89
Q ss_pred CeEEEeeCC-ceEEEEe
Q 025649 233 ENLVVCDTS-KVVKVYS 248 (250)
Q Consensus 233 ~~l~s~~~d-~~i~vw~ 248 (250)
++|||...| .-|++|-
T Consensus 630 D~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 630 DFLATVHVDQNGIYLWS 646 (910)
T ss_pred CEEEEEEecCceEEEEE
Confidence 999999887 6799994
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=5.6e-20 Score=138.05 Aligned_cols=212 Identities=14% Similarity=0.091 Sum_probs=145.5
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||..+++.+..+. .+.. +..++|+|+++.++++++.|+.|++||+++++.+..+..+ ..+
T Consensus 54 ~v~~~d~~~~~~~~~~~-~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~--------------~~~ 117 (300)
T TIGR03866 54 TIQVIDLATGEVIGTLP-SGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG--------------VEP 117 (300)
T ss_pred eEEEEECCCCcEEEecc-CCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC--------------CCc
Confidence 47899999998888787 5544 5688999999844456677899999999987766666422 345
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCC-eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee----eeeccCeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDG-VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI----LDQSGGKRL 155 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 155 (250)
.+++++| +++++++++.++ .+.+||.++++........ .....++|+|+++.++..+. ...++....
T Consensus 118 ~~~~~~~------dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 118 EGMAVSP------DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD--QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred ceEEECC------CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC--CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 7799998 999999888765 5678899887665443322 34567899999998863221 112222222
Q ss_pred eeeccccCc-----c--ccEEEEEeecCCCCCcEEEE-eeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEe
Q 025649 156 HLDYSVGGH-----T--AAASCVAFSMFGERGKYLIS-GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 227 (250)
Q Consensus 156 ~~~~~~~~h-----~--~~v~~~~~~p~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 227 (250)
+.+..+..+ . .....++|+ |++++++. .+.++.+.+||++++ +.... ..+...+.+++|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~s---~dg~~~~~~~~~~~~i~v~d~~~~---------~~~~~-~~~~~~~~~~~~ 256 (300)
T TIGR03866 190 KVIKKITFEIPGVHPEAVQPVGIKLT---KDGKTAFVALGPANRVAVVDAKTY---------EVLDY-LLVGQRVWQLAF 256 (300)
T ss_pred eeeeeeeecccccccccCCccceEEC---CCCCEEEEEcCCCCeEEEEECCCC---------cEEEE-EEeCCCcceEEE
Confidence 222222211 1 123467888 88887554 445678999999886 33222 234457889999
Q ss_pred cCCCCCeEEEe-eCCceEEEEeCC
Q 025649 228 TPTESENLVVC-DTSKVVKVYSIS 250 (250)
Q Consensus 228 ~~~~~~~l~s~-~~d~~i~vw~~~ 250 (250)
+| ++++|+++ +.++.|++||++
T Consensus 257 ~~-~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 257 TP-DEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred CC-CCCEEEEEcCCCCeEEEEECC
Confidence 98 88888775 569999999974
No 134
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.9e-21 Score=137.43 Aligned_cols=187 Identities=17% Similarity=0.277 Sum_probs=147.3
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCC-CCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPW-KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+|++||..+++.+..++ ++...++.+.|..+ +.+.+.+|+.||+|++||++.......+..... .+.+
T Consensus 51 sv~lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~----------~~~~ 119 (376)
T KOG1188|consen 51 SVRLYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ----------SGTP 119 (376)
T ss_pred eEEEEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC----------CCCc
Confidence 58999999999999999 99999999999774 555899999999999999998877666664421 1245
Q ss_pred eeEEecCCCcccCCCCCEEEEEe----CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649 80 VHAIAIPDADMLDKTNKICVVAK----GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 155 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (250)
..+++.+. +++++++|. .+-.|.+||++..+...
T Consensus 120 f~~ld~nc------k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l------------------------------------ 157 (376)
T KOG1188|consen 120 FICLDLNC------KKNIIACGTELTRSDASVVLWDVRSEQQLL------------------------------------ 157 (376)
T ss_pred ceEeeccC------cCCeEEeccccccCceEEEEEEeccccchh------------------------------------
Confidence 67777775 778888885 46789999999754211
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
-.-...|...|+++.|+| .+-++|++||.||.|.+||++..... ..+.....|...|..+.|..+.=+.|
T Consensus 158 --~~~~eSH~DDVT~lrFHP--~~pnlLlSGSvDGLvnlfD~~~d~Ee------DaL~~viN~~sSI~~igw~~~~ykrI 227 (376)
T KOG1188|consen 158 --RQLNESHNDDVTQLRFHP--SDPNLLLSGSVDGLVNLFDTKKDNEE------DALLHVINHGSSIHLIGWLSKKYKRI 227 (376)
T ss_pred --hhhhhhccCcceeEEecC--CCCCeEEeecccceEEeeecCCCcch------hhHHHhhcccceeeeeeeecCCcceE
Confidence 113467999999999997 55689999999999999999886332 45556678889999999997332458
Q ss_pred EEeeCCceEEEEeCC
Q 025649 236 VVCDTSKVVKVYSIS 250 (250)
Q Consensus 236 ~s~~~d~~i~vw~~~ 250 (250)
.+-+......+|+++
T Consensus 228 ~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 228 MCLTHMETFAIYELE 242 (376)
T ss_pred EEEEccCceeEEEcc
Confidence 888889999999874
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=2.6e-21 Score=135.45 Aligned_cols=163 Identities=18% Similarity=0.167 Sum_probs=134.6
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
+|.-.|.++.|-|-...++.++|.|.++++||.++.+....|+ .++.|++-+++|.+. ...++
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~--------------me~~VYshamSp~a~---sHcLi 161 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK--------------MEGKVYSHAMSPMAM---SHCLI 161 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee--------------cCceeehhhcChhhh---cceEE
Confidence 7888999999999877699999999999999999999888888 347899999998654 45688
Q ss_pred EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee-------ccC------------eeeeeec
Q 025649 99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ-------SGG------------KRLHLDY 159 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~------------~~~~~~~ 159 (250)
|+|..|-.|++.|+.+|.....+..+ ...+..+.|+|...+++..+..|+ +-. .....++
T Consensus 162 A~gtr~~~VrLCDi~SGs~sH~LsGH-r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~ 240 (397)
T KOG4283|consen 162 AAGTRDVQVRLCDIASGSFSHTLSGH-RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK 240 (397)
T ss_pred EEecCCCcEEEEeccCCcceeeeccc-cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc
Confidence 99999999999999999988877766 488999999999999986554433 311 1122223
Q ss_pred cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcc
Q 025649 160 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 202 (250)
Q Consensus 160 ~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~ 202 (250)
.-.+|.+.+..++|+ .++.++++++.|..+++|+..++..
T Consensus 241 ~n~ah~gkvngla~t---Sd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 241 TNTAHYGKVNGLAWT---SDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ccccccceeeeeeec---ccchhhhhccCccceEEeecccCcc
Confidence 345788999999999 9999999999999999999988754
No 136
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=1.9e-21 Score=156.48 Aligned_cols=185 Identities=15% Similarity=0.164 Sum_probs=143.2
Q ss_pred CCCCeeeEEEcCCCCeEEEEec--CCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC
Q 025649 20 HSSICSSVQFIPWKPWEVISGG--LDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 96 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s--~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (250)
+...|.++..+|++. .++||+ .||.+++|+...- +........ -...-.....|...|.|+.|+| ||+
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~--l~k~l~~m~~h~~sv~CVR~S~------dG~ 82 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNEN--LPKHLCTMDDHDGSVNCVRFSP------DGS 82 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhhcc--cchhheeeccccCceeEEEECC------CCC
Confidence 345799999999999 899999 8999999997531 111100000 0011123334788999999999 999
Q ss_pred EEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-eeeccCeeeeeeccccCccccEEEEEeec
Q 025649 97 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-LDQSGGKRLHLDYSVGGHTAAASCVAFSM 175 (250)
Q Consensus 97 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 175 (250)
+||+|+.|+.|.+|+... ...... .+. ......+.-+....+.+|...|..+.|+
T Consensus 83 ~lAsGSDD~~v~iW~~~~-~~~~~~----------------------fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws- 138 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAE-IGSGTV----------------------FGSTGGAKNVESWKVVSILRGHDSDVLDVNWS- 138 (942)
T ss_pred eEeeccCcceEEEeeecc-cCCccc----------------------ccccccccccceeeEEEEEecCCCccceeccC-
Confidence 999999999999999874 100000 000 0111234556677899999999999999
Q ss_pred CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 176 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 176 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
|++.+|++++.|++|.||+.++. +.+..+.+|.+.|..+.|.| -|++|++-+.|++|++|++
T Consensus 139 --p~~~~lvS~s~DnsViiwn~~tF---------~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt 200 (942)
T KOG0973|consen 139 --PDDSLLVSVSLDNSVIIWNAKTF---------ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRT 200 (942)
T ss_pred --CCccEEEEecccceEEEEccccc---------eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEc
Confidence 89999999999999999999998 77889999999999999998 8999999999999999985
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=8.5e-20 Score=137.09 Aligned_cols=212 Identities=14% Similarity=0.053 Sum_probs=143.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+.+++.+..+. .+.. +.+++|+|+++.++++++.++.|++||..+++....+..+ ..+
T Consensus 12 ~v~~~d~~t~~~~~~~~-~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--------------~~~ 75 (300)
T TIGR03866 12 TISVIDTATLEVTRTFP-VGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG--------------PDP 75 (300)
T ss_pred EEEEEECCCCceEEEEE-CCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--------------CCc
Confidence 47899999999998888 6544 6789999999844467888999999999988776655422 234
Q ss_pred eEEecCCCcccCCCCCEEEEE-eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeee
Q 025649 81 HAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRL 155 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 155 (250)
..+.++| +++.++++ +.++.+++||+++.+....+... ..+..++++|+|..++...... ..+....
T Consensus 76 ~~~~~~~------~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~ 147 (300)
T TIGR03866 76 ELFALHP------NGKILYIANEDDNLVTVIDIETRKVLAEIPVG--VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY 147 (300)
T ss_pred cEEEECC------CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC--CCcceEEECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 5678888 88877554 56899999999987766555432 3467899999999988422110 1112222
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEE-eeCCCeEEEEecCCCcceecccccceeeeeec-----cC--CceeEEEe
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLIS-GGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-----LN--KKVNWLCT 227 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~--~~v~~~~~ 227 (250)
+....+. ....+.+++|+ +++++++. +..++.|++||+++++.. ..+.. +. .....+++
T Consensus 148 ~~~~~~~-~~~~~~~~~~s---~dg~~l~~~~~~~~~v~i~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~ 214 (300)
T TIGR03866 148 EIVDNVL-VDQRPRFAEFT---ADGKELWVSSEIGGTVSVIDVATRKVI---------KKITFEIPGVHPEAVQPVGIKL 214 (300)
T ss_pred eEEEEEE-cCCCccEEEEC---CCCCEEEEEcCCCCEEEEEEcCcceee---------eeeeecccccccccCCccceEE
Confidence 2222221 12345678999 88887754 456999999999987432 22111 11 12346788
Q ss_pred cCCCCCeEEE-eeCCceEEEEeCC
Q 025649 228 TPTESENLVV-CDTSKVVKVYSIS 250 (250)
Q Consensus 228 ~~~~~~~l~s-~~~d~~i~vw~~~ 250 (250)
+| ++++++. .+.++.+.+||++
T Consensus 215 s~-dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 215 TK-DGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CC-CCCEEEEEcCCCCeEEEEECC
Confidence 87 7776544 4557789999863
No 138
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=2.3e-20 Score=144.08 Aligned_cols=216 Identities=14% Similarity=0.166 Sum_probs=157.5
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
+.+||+..|.++++++ +|.+.|.|++|+.+|+ .+++|+.|..|.+|+.+ ....++.. |.+.|.
T Consensus 35 lliyD~ndG~llqtLK-gHKDtVycVAys~dGk-rFASG~aDK~VI~W~~k---lEG~LkYS------------H~D~IQ 97 (1081)
T KOG1538|consen 35 LLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSK---LEGILKYS------------HNDAIQ 97 (1081)
T ss_pred EEEEeCCCcccccccc-cccceEEEEEEccCCc-eeccCCCceeEEEeccc---ccceeeec------------cCCeee
Confidence 5789999999999999 9999999999999999 89999999999999854 22333333 667777
Q ss_pred EEecCCC---------------------------------cccCCCCCEEEEEeCCCeEEEEeCCCcee-EeeccCCCCC
Q 025649 82 AIAIPDA---------------------------------DMLDKTNKICVVAKGDGVVDVINIESELN-ISRSKSTTKP 127 (250)
Q Consensus 82 ~~~~~~~---------------------------------~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~ 127 (250)
||.|+|. ..+..||++++.|-.||+|.+-+...... ..........
T Consensus 98 CMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Ns 177 (1081)
T KOG1538|consen 98 CMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNS 177 (1081)
T ss_pred EeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCC
Confidence 7777774 12245899999999999999986654332 2333444568
Q ss_pred Cccceeecccce-----eEEEeeeeeeccC---eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC
Q 025649 128 LKGSQSTSKVNI-----RDAEMEILDQSGG---KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 199 (250)
Q Consensus 128 ~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~ 199 (250)
++.+++|+|... .++ +..|..+.. -..+.+.+-+.-.-...|+.+. ++|.|++.|+.|+.+.+|--+.
T Consensus 178 piwsi~~~p~sg~G~~di~a-V~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf---~NGEy~LiGGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 178 PIWSICWNPSSGEGRNDILA-VADWGQTLSFYQLSGKQIGKDRALNFDPCCISYF---TNGEYILLGGSDKQLSLFTRDG 253 (1081)
T ss_pred CceEEEecCCCCCCccceEE-EEeccceeEEEEecceeecccccCCCCchhheec---cCCcEEEEccCCCceEEEeecC
Confidence 999999999642 222 222322211 0111111111122345688888 8999999999999999996554
Q ss_pred CcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 200 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
-.+.+.......|++++..| ++++++.|+.||+|-.|++
T Consensus 254 ----------vrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 254 ----------VRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ----------eEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhhh
Confidence 44455556667899999998 8999999999999988875
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=4.7e-21 Score=148.72 Aligned_cols=217 Identities=11% Similarity=0.109 Sum_probs=169.5
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCC--CCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
+++|||+..-+....+. +|...|.|+.|+.- +..+|++++.|.-|.++|+... .++.++. + |.
T Consensus 482 nlrVy~Lq~l~~~~~~e-AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld-~------------HS 547 (1080)
T KOG1408|consen 482 NLRVYDLQELEYTCFME-AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD-G------------HS 547 (1080)
T ss_pred ceEEEEehhhhhhhhee-cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc-c------------cc
Confidence 58999999999999999 99999999999852 2238999999999999998643 4555554 2 67
Q ss_pred CceeEEecCCCcccCCCC--CEEEEEeCCCeEEEEeCCC---ceeE-eeccCCCCCCccceeecccceeEEEe------e
Q 025649 78 AFVHAIAIPDADMLDKTN--KICVVAKGDGVVDVINIES---ELNI-SRSKSTTKPLKGSQSTSKVNIRDAEM------E 145 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~--~~l~~~~~d~~i~~~d~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 145 (250)
..|+++.|.. +| ..+++++.|+.|++--.+. +... ..-....+..+..++..|..+++++. .
T Consensus 548 ssITsvKFa~------~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 548 SSITSVKFAC------NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred cceeEEEEee------cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceE
Confidence 8999999986 44 6889999999877644432 2211 11112223678889999999999863 2
Q ss_pred eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649 146 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 225 (250)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (250)
.++....+..+..+.-.+|.+....+... |.|.|+++.+.|+++.++|.-++ +++....+|...|+.+
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~lIKv~lD---PSgiY~atScsdktl~~~Df~sg---------EcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDLIKVILD---PSGIYLATSCSDKTLCFVDFVSG---------ECVAQMTGHSEAVTGV 689 (1080)
T ss_pred EEeccccceeeeecccccCCCceEEEEEC---CCccEEEEeecCCceEEEEeccc---------hhhhhhcCcchheeee
Confidence 34444444444334445677788888888 89999999999999999999998 7778899999999999
Q ss_pred EecCCCCCeEEEeeCCceEEEEeCC
Q 025649 226 CTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 226 ~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.|.+ |.++|++.+.||.|.||.++
T Consensus 690 kF~n-DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 690 KFLN-DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred eecc-cchhheeecCCceEEEEECc
Confidence 9997 89999999999999999874
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.7e-20 Score=147.60 Aligned_cols=207 Identities=14% Similarity=0.132 Sum_probs=152.6
Q ss_pred eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649 16 LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 94 (250)
Q Consensus 16 l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (250)
++.+|+...+.|+|.|+|+ .|++|+.||.|++|+..+. +....+. .+...|.+++. +
T Consensus 8 lRyaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~-------------~~g~~v~~ia~--------~ 65 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPETID-------------ISGELVSSIAC--------Y 65 (933)
T ss_pred chhhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCchhh-------------ccCceeEEEee--------c
Confidence 3347999999999999999 8999999999999998665 3333332 12456677665 4
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc----CeeeeeeccccCccccEEE
Q 025649 95 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASC 170 (250)
Q Consensus 95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~ 170 (250)
+++|++|+.+++|.+|...+++.-..+.. ...++.+++++-+|.+++ .|+.|... .........+++|.++|.+
T Consensus 66 s~~f~~~s~~~tv~~y~fps~~~~~iL~R-ftlp~r~~~v~g~g~~ia-agsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 66 SNHFLTGSEQNTVLRYKFPSGEEDTILAR-FTLPIRDLAVSGSGKMIA-AGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred ccceEEeeccceEEEeeCCCCCccceeee-eeccceEEEEecCCcEEE-eecCceeEEEEeccccchheeecccCCceee
Confidence 56999999999999999988654322111 125788999999999998 55544432 2233345678999999999
Q ss_pred EEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc-----------------------------------------ccc
Q 025649 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS-----------------------------------------INN 209 (250)
Q Consensus 171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----------------------------------------~~~ 209 (250)
+.|+ |++++||+.+-||.|++||+.++....+. ..-
T Consensus 144 l~~~---p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 144 LSYD---PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred eeEc---CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence 9999 89999999999999999999877543200 000
Q ss_pred ceee--eeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 210 DLLI--KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 210 ~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+... ....+...+..+.|+| .|+|||+++.||.|.|||+.
T Consensus 221 e~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred eeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEecc
Confidence 0001 1122344588899998 79999999999999999973
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=9e-21 Score=141.35 Aligned_cols=198 Identities=15% Similarity=0.130 Sum_probs=159.1
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|+|||++...+.+.++ +|.+.|+++.++.... +|++++..|.|.|..+.++.....|..+ ....|
T Consensus 102 ~Vkiwdl~~kl~hr~lk-dh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~------------sgqsv 167 (673)
T KOG4378|consen 102 CVKIWDLRAKLIHRFLK-DHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTID------------SGQSV 167 (673)
T ss_pred eeeehhhHHHHHhhhcc-CCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecC------------CCCeE
Confidence 58999999878888899 9999999999999998 9999999999999999998877777644 23456
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----cCeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLH 156 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 156 (250)
.-+.++| ....+|.+++.+|.|.+||+............+..+...++|+|.+..++..-..|.. +.....
T Consensus 168 Rll~ys~-----skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 168 RLLRYSP-----SKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred EEeeccc-----ccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 6889998 3556778889999999999998888888888888999999999988776642222221 111111
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 229 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 229 (250)
....+ ....+...++|+ ++|.+|+.|+..|.|..||++..+ .++.....|...|++++|-|
T Consensus 243 s~~~l-~y~~Plstvaf~---~~G~~L~aG~s~G~~i~YD~R~~k--------~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 243 STDRL-TYSHPLSTVAFS---ECGTYLCAGNSKGELIAYDMRSTK--------APVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred cccee-eecCCcceeeec---CCceEEEeecCCceEEEEecccCC--------CCceEeeecccceeEEEeee
Confidence 11222 234577899999 899999999999999999999874 56778889999999999986
No 142
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=6.2e-21 Score=138.27 Aligned_cols=168 Identities=14% Similarity=0.224 Sum_probs=131.3
Q ss_pred eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCC
Q 025649 16 LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN 95 (250)
Q Consensus 16 l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 95 (250)
+. ||+++|..++|+|.+...|||||.|.+|.||.+..+-....+. .....+..|...|--++|+| .-.
T Consensus 77 v~-GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------epvv~L~gH~rrVg~V~wHP-----tA~ 144 (472)
T KOG0303|consen 77 VC-GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------EPVVELYGHQRRVGLVQWHP-----TAP 144 (472)
T ss_pred cc-CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------cceEEEeecceeEEEEeecc-----cch
Confidence 44 9999999999999887799999999999999997665444333 11233445888999999999 467
Q ss_pred CEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeec
Q 025649 96 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM 175 (250)
Q Consensus 96 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 175 (250)
+.|++++.|++|.+||+.+++.+. ++. |...|+++.|+
T Consensus 145 NVLlsag~Dn~v~iWnv~tgeali----------------------------------------~l~-hpd~i~S~sfn- 182 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTGEALI----------------------------------------TLD-HPDMVYSMSFN- 182 (472)
T ss_pred hhHhhccCCceEEEEeccCCceee----------------------------------------ecC-CCCeEEEEEec-
Confidence 899999999999999999876332 334 88999999999
Q ss_pred CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc-eeEEEecCCCCCeEEEee---CCceEEEEeC
Q 025649 176 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK-VNWLCTTPTESENLVVCD---TSKVVKVYSI 249 (250)
Q Consensus 176 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~---~d~~i~vw~~ 249 (250)
.+|.+|++.+.|+.|+|||.+++ +++..-.+|.+. ...+.|- .++.++.||- .++.+-+||-
T Consensus 183 --~dGs~l~TtckDKkvRv~dpr~~---------~~v~e~~~heG~k~~Raifl-~~g~i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 183 --RDGSLLCTTCKDKKVRVIDPRRG---------TVVSEGVAHEGAKPARAIFL-ASGKIFTTGFSRMSERQIALWDP 248 (472)
T ss_pred --cCCceeeeecccceeEEEcCCCC---------cEeeecccccCCCcceeEEe-ccCceeeeccccccccceeccCc
Confidence 99999999999999999999998 555555677764 3333454 3777444443 4778888874
No 143
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=5.9e-20 Score=143.86 Aligned_cols=223 Identities=15% Similarity=0.150 Sum_probs=160.7
Q ss_pred cEEEEcccc-eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc--cceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN--KIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~-~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+.||+++.. .....+. -...|+++.|+|..+.+++.|..+|+|.+||++.+... ..+. .....|+.
T Consensus 224 ~~vW~~~~p~~Pe~~~~--~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls---------~~~~sh~~ 292 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLE--SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS---------ALEVSHSE 292 (555)
T ss_pred EEEEecCCCCCceEEEe--cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc---------cccccCCc
Confidence 678999855 4444454 67899999999999889999999999999999877652 2221 23344788
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec-----c------CCCCCCccceeecccceeEEEeeee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-----K------STTKPLKGSQSTSKVNIRDAEMEIL 147 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-----~------~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (250)
.+..+.|... ..+.-+++++.||.|..|+++.-..+... . ......+.+++|.+.....+.+|..
T Consensus 293 ~v~~vvW~~~----~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe 368 (555)
T KOG1587|consen 293 PVTAVVWLQN----EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE 368 (555)
T ss_pred CeEEEEEecc----CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC
Confidence 8999988761 23466999999999999998864332111 1 1223567788888765544445544
Q ss_pred eeccC------------eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee
Q 025649 148 DQSGG------------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN 215 (250)
Q Consensus 148 ~~~~~------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 215 (250)
.+... ...+....+..|.+.|+++.++||.+ .++++++ |.+++||...... .++..+
T Consensus 369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~--k~fls~g-DW~vriWs~~~~~--------~Pl~~~ 437 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP--KNFLSVG-DWTVRIWSEDVIA--------SPLLSL 437 (555)
T ss_pred CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc--ceeeeec-cceeEeccccCCC--------Ccchhh
Confidence 44321 11123446667899999999998765 4566666 9999999887321 455566
Q ss_pred eccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 216 INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 216 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
..+...+++++|+|.....|+++..||.|.+||+.
T Consensus 438 ~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 438 DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred hhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 67777899999999888899999999999999973
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.5e-19 Score=126.13 Aligned_cols=216 Identities=10% Similarity=0.135 Sum_probs=147.6
Q ss_pred eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
..|..+|.+-|+++.|.+.|+ .+++|+.|++|+|||.++...-.... .....|...|..+.|.+ +.
T Consensus 6 ~pi~s~h~DlihdVs~D~~GR-RmAtCSsDq~vkI~d~~~~s~~W~~T---------s~Wrah~~Si~rV~WAh----PE 71 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGR-RMATCSSDQTVKIWDSTSDSGTWSCT---------SSWRAHDGSIWRVVWAH----PE 71 (361)
T ss_pred cccccCCcceeeeeeecccCc-eeeeccCCCcEEEEeccCCCCceEEe---------eeEEecCCcEEEEEecC----cc
Confidence 455558999999999999999 89999999999999976544322221 11223578899999976 24
Q ss_pred CCCEEEEEeCCCeEEEEeCCCce-------eE-eeccCCCCCCccceeeccc--ceeEEEeeeeeecc----------Ce
Q 025649 94 TNKICVVAKGDGVVDVINIESEL-------NI-SRSKSTTKPLKGSQSTSKV--NIRDAEMEILDQSG----------GK 153 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~-------~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----------~~ 153 (250)
-|+.+|+++.|+++.||.-.... -. ..........+..+.|.|. |-.+++ ...|+.. ..
T Consensus 72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-~~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-ASADGILRIYEAPDPMNLS 150 (361)
T ss_pred ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-eccCcEEEEEecCCccccc
Confidence 59999999999999999763211 11 1122233478899999996 455553 2222221 11
Q ss_pred eeeeecccc-------CccccEEEEEeecCCCCCcEEEEeeCC-----CeEEEEecCCCcceecccccceeeeeeccCCc
Q 025649 154 RLHLDYSVG-------GHTAAASCVAFSMFGERGKYLISGGND-----KLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 221 (250)
Q Consensus 154 ~~~~~~~~~-------~h~~~v~~~~~~p~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (250)
.-.+..+++ .+.....|+.|+|-.-..++|+.|+.+ +.++||........- ..+..+.+|+.+
T Consensus 151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw-----~kva~L~d~~dp 225 (361)
T KOG2445|consen 151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW-----LKVAELPDHTDP 225 (361)
T ss_pred cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee-----eeehhcCCCCCc
Confidence 111222332 466788999999533345688888866 489999877653211 233455699999
Q ss_pred eeEEEecCCCCC---eEEEeeCCceEEEEeCC
Q 025649 222 VNWLCTTPTESE---NLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 222 v~~~~~~~~~~~---~l~s~~~d~~i~vw~~~ 250 (250)
|+.++|.|.-|+ .||+++.|| |+||++.
T Consensus 226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred ceeeeeccccCCceeeEEEeecCc-EEEEEEe
Confidence 999999996554 589999999 9999863
No 145
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=1.4e-19 Score=126.53 Aligned_cols=221 Identities=16% Similarity=0.194 Sum_probs=154.7
Q ss_pred cEEEEccc--ce--eeeeec----cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649 2 WQIIDIRQ--HC--LYKSLR----AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 2 i~iwd~~~--~~--~~~~l~----~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 73 (250)
+|||.+.. .+ +...|. ..+..++++..|+.-.+.+|.++|-|-+..|||++++.. ..+ .+.+
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-~~v---------kTQL 192 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-GTV---------KTQL 192 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-cce---------eeEE
Confidence 68998763 22 222222 145679999999988877999999999999999998732 111 1233
Q ss_pred ccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc-CC-CCCCccceeeccc-ceeEEEee-----
Q 025649 74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK-ST-TKPLKGSQSTSKV-NIRDAEME----- 145 (250)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~-~~~~~~~~~~~~~-~~~~~~~~----- 145 (250)
..|.+.|+.++|.. ..-+.+++.+.||.+|+||++.......+. .+ .......++++++ -+++++..
T Consensus 193 IAHDKEV~DIaf~~-----~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~ 267 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLK-----GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNK 267 (364)
T ss_pred EecCcceeEEEecc-----CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCce
Confidence 44889999999996 345688999999999999999854332222 22 2467778888875 45555421
Q ss_pred --eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649 146 --ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 223 (250)
Q Consensus 146 --~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (250)
..|. +....++.++++|.+.|+.++|.| .....++|++.|..+.+||+........ ..++.. ..-++.|+
T Consensus 268 V~iLDi--R~P~tpva~L~~H~a~VNgIaWaP--hS~~hictaGDD~qaliWDl~q~~~~~~---~dPila-y~a~~EVN 339 (364)
T KOG0290|consen 268 VVILDI--RVPCTPVARLRNHQASVNGIAWAP--HSSSHICTAGDDCQALIWDLQQMPRENG---EDPILA-YTAGGEVN 339 (364)
T ss_pred EEEEEe--cCCCcceehhhcCcccccceEecC--CCCceeeecCCcceEEEEecccccccCC---CCchhh-hhccceee
Confidence 2222 234456788999999999999997 4567999999999999999987533100 012112 23567899
Q ss_pred EEEecCCCCCeEEEeeCCceEEE
Q 025649 224 WLCTTPTESENLVVCDTSKVVKV 246 (250)
Q Consensus 224 ~~~~~~~~~~~l~s~~~d~~i~v 246 (250)
.+.|+|..+..|+.+. ++++.+
T Consensus 340 qi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 340 QIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred eeeecccCCCEEEEEe-cCeeeE
Confidence 9999988888888876 444544
No 146
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.2e-19 Score=132.65 Aligned_cols=195 Identities=16% Similarity=0.154 Sum_probs=147.4
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC--CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC-E
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK--GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-I 97 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~ 97 (250)
.+.|+++.|+|..+ +|++|+.|++++||.+.. ...+..+.+. .-+|.+..|.| +|. .
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~~l~-------------~fPi~~a~f~p------~G~~~ 272 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSIHLE-------------KFPIQKAEFAP------NGHSV 272 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhheeeeec-------------cCccceeeecC------CCceE
Confidence 46899999999999 999999999999999852 3344555443 56788999998 888 8
Q ss_pred EEEEeCCCeEEEEeCCCceeEee--ccCCCCCCccceeecccceeEEEeee---eeeccCeeeeeeccccCccccEEEEE
Q 025649 98 CVVAKGDGVVDVINIESELNISR--SKSTTKPLKGSQSTSKVNIRDAEMEI---LDQSGGKRLHLDYSVGGHTAAASCVA 172 (250)
Q Consensus 98 l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~~~ 172 (250)
+++++....++.||+.+.+.... ........+.....++++++++..|. .......+.+.+..++ -.+.|..+.
T Consensus 273 i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~ 351 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFT 351 (514)
T ss_pred EEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEE
Confidence 99999999999999998765433 23333457788899999999985332 2222234444555554 356789999
Q ss_pred eecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC-ceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 173 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 173 ~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
|+ .+++.|+..+.+|.|.+||++.. .++..+....+ .-++++.++ ++++||+|+..|.|.|||.
T Consensus 352 fs---Sdsk~l~~~~~~GeV~v~nl~~~---------~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 352 FS---SDSKELLASGGTGEVYVWNLRQN---------SCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred Ee---cCCcEEEEEcCCceEEEEecCCc---------ceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEecc
Confidence 99 89999999999999999999997 34444433322 234566665 8999999999999999985
No 147
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=3.3e-20 Score=127.94 Aligned_cols=230 Identities=13% Similarity=0.097 Sum_probs=147.7
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc--------------ceecC-CCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK--------------IVNFG-LPE 66 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~--------------~~~~~-~~~ 66 (250)
|.+|++.+.+.+..++..|...|+.+..-|++ .|.+-+.|+.+.+|++.-+..+. .+..+ .+.
T Consensus 37 V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~ 114 (323)
T KOG0322|consen 37 VKMWVLQTERDLPLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNS 114 (323)
T ss_pred EEEEEeecCccchhhhhhccceeeceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcc
Confidence 78999999998888874467899999999986 48999999999999987532111 11000 000
Q ss_pred --------CCCCC---Cccc--------------CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec
Q 025649 67 --------NNGNA---GQCY--------------NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 121 (250)
Q Consensus 67 --------~~~~~---~~~~--------------~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 121 (250)
..... ..+. ..+.+.+..+.- -....-++++|.++|.+.+||+.++.....+
T Consensus 115 eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~---~c~s~~lllaGyEsghvv~wd~S~~~~~~~~ 191 (323)
T KOG0322|consen 115 EQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH---ACGSTFLLLAGYESGHVVIWDLSTGDKIIQL 191 (323)
T ss_pred hhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc---cccceEEEEEeccCCeEEEEEccCCceeecc
Confidence 00000 0000 001122222111 0012235688889999999999987444333
Q ss_pred cC---------CCCCCccceeecccceeEEEeee------eeec-cCeeeeeeccccCccccEEEEEeecCCCCCcEEEE
Q 025649 122 KS---------TTKPLKGSQSTSKVNIRDAEMEI------LDQS-GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS 185 (250)
Q Consensus 122 ~~---------~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s 185 (250)
+. .+..++.++.+.+.-..=+.-+. +... .....+....+.-....|..+..- ||++.+||
T Consensus 192 ~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIR---pD~KIlAT 268 (323)
T KOG0322|consen 192 PQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIR---PDGKILAT 268 (323)
T ss_pred ccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEc---cCCcEEee
Confidence 22 23466777777653222111000 1110 011111112222233457888888 89999999
Q ss_pred eeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 186 GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 186 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
++.|++||||..++. .++..+..|...|++++|+| +..++|+++.|+.|.+|++
T Consensus 269 AGWD~RiRVyswrtl---------~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 269 AGWDHRIRVYSWRTL---------NPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred cccCCcEEEEEeccC---------CchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 999999999999998 77788899999999999998 7789999999999999986
No 148
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.3e-19 Score=137.27 Aligned_cols=201 Identities=12% Similarity=0.119 Sum_probs=151.8
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc-ceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK-IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
-...|.+|+|+.+.. .||.+-.||.|-+|+++.+-... .+..+ ....|.+++|++ +..|
T Consensus 24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~~vi~g~------------~drsIE~L~W~e-------~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLEPVIHGP------------EDRSIESLAWAE-------GGRL 83 (691)
T ss_pred eccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceeeEEEecC------------CCCceeeEEEcc-------CCeE
Confidence 457899999999998 79999999999999998764333 33322 356899999995 7788
Q ss_pred EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc------CeeeeeeccccCccccEEEEE
Q 025649 99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG------GKRLHLDYSVGGHTAAASCVA 172 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~h~~~v~~~~ 172 (250)
++.+.+|.|.-||+.+++........ ...+++++.+|.+..++ +|+.++.. ....+....+...++.|.+++
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~~~d~~-gg~IWsiai~p~~~~l~-IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls 161 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKYNIDSN-GGAIWSIAINPENTILA-IGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS 161 (691)
T ss_pred EeecCCceEEEEecccCceeEEecCC-CcceeEEEeCCccceEE-eecCCceEEEEecCCceEEEEeecccccceEEEEE
Confidence 88899999999999998887766554 48899999999998888 77555531 123333445555678999999
Q ss_pred eecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec-cCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 173 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 173 ~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
|+ |++..+++|+.||.|++||..++..... ...+. ..... -.--|+++.+-. ++ .|++|..-|+|++||-
T Consensus 162 w~---~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~-~~~~~-d~l~k~~~~iVWSv~~Lr-d~-tI~sgDS~G~V~FWd~ 232 (691)
T KOG2048|consen 162 WN---PTGTKIAGGSIDGVIRIWDVKSGQTLHI-ITMQL-DRLSKREPTIVWSVLFLR-DS-TIASGDSAGTVTFWDS 232 (691)
T ss_pred ec---CCccEEEecccCceEEEEEcCCCceEEE-eeecc-cccccCCceEEEEEEEee-cC-cEEEecCCceEEEEcc
Confidence 99 8999999999999999999999865431 00001 11111 222378888774 55 6999999999999984
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=8.6e-19 Score=135.00 Aligned_cols=212 Identities=18% Similarity=0.208 Sum_probs=164.8
Q ss_pred CcEEEEcccce-eeeeeccCC-CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHC-LYKSLRAGH-SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~-~~~~l~~~h-~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|.||++..+= +...+. ++ ...|.+++|++.++ |.+.+.+|.|.-||+.+++.+..+... ..
T Consensus 48 ~IEiwN~~~~w~~~~vi~-g~~drsIE~L~W~e~~R--LFS~g~sg~i~EwDl~~lk~~~~~d~~-------------gg 111 (691)
T KOG2048|consen 48 NIEIWNLSNNWFLEPVIH-GPEDRSIESLAWAEGGR--LFSSGLSGSITEWDLHTLKQKYNIDSN-------------GG 111 (691)
T ss_pred cEEEEccCCCceeeEEEe-cCCCCceeeEEEccCCe--EEeecCCceEEEEecccCceeEEecCC-------------Cc
Confidence 47899998654 445566 65 46899999997764 889999999999999999988877633 57
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC-CCCCCccceeecccceeEEEeeeee-------ec
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDAEMEILD-------QS 150 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 150 (250)
.|++++.+| .+..++.|+.||.+..++...+........ ..+..+.+++|+|++..++ .|+.| ..
T Consensus 112 ~IWsiai~p------~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~-~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 112 AIWSIAINP------ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA-GGSIDGVIRIWDVK 184 (691)
T ss_pred ceeEEEeCC------ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE-ecccCceEEEEEcC
Confidence 899999999 899999999999888888888777654433 3348999999999999887 44433 33
Q ss_pred cCeeeee----ecccc-CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649 151 GGKRLHL----DYSVG-GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 225 (250)
Q Consensus 151 ~~~~~~~----~~~~~-~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (250)
....... +..+. +...-|+++.|- .+ ..+++|..-|+|.+||...+ .++..+..|...|.++
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~L---rd-~tI~sgDS~G~V~FWd~~~g---------TLiqS~~~h~adVl~L 251 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFL---RD-STIASGDSAGTVTFWDSIFG---------TLIQSHSCHDADVLAL 251 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEe---ec-CcEEEecCCceEEEEcccCc---------chhhhhhhhhcceeEE
Confidence 3333321 11111 133457888887 44 57999999999999999998 6777888999999999
Q ss_pred EecCCCCCeEEEeeCCceEEEEeC
Q 025649 226 CTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 226 ~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+..+ ++..+++++.|+.|..|..
T Consensus 252 av~~-~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 252 AVAD-NEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred EEcC-CCCeEEEccCCCceEEEEe
Confidence 9987 7788999999999887753
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=3.2e-20 Score=141.98 Aligned_cols=209 Identities=14% Similarity=0.097 Sum_probs=134.5
Q ss_pred cEEEEccccee------eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccc-eecCCCCCCCCCCcc
Q 025649 2 WQIIDIRQHCL------YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI-VNFGLPENNGNAGQC 74 (250)
Q Consensus 2 i~iwd~~~~~~------~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~ 74 (250)
|.++|.+.... ++... .|.+.|.++.|-| |+..|++++.|.++++||+++++.... +.++
T Consensus 76 i~l~dt~~~~fr~ee~~lk~~~-aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G----------- 142 (720)
T KOG0321|consen 76 IILFDTKSIVFRLEERQLKKPL-AHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLG----------- 142 (720)
T ss_pred eeeecchhhhcchhhhhhcccc-cccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecc-----------
Confidence 45666553222 24445 8999999999999 555899999999999999998877654 3334
Q ss_pred cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee---cc
Q 025649 75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ---SG 151 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 151 (250)
|...|.+++|.| .+...+++|+.||.|.|||++........... ..+ .+.... -.
T Consensus 143 -H~~SvkS~cf~~-----~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~--~~~--------------~~~~n~~ptps 200 (720)
T KOG0321|consen 143 -HTGSVKSECFMP-----TNPAVFCTGGRDGEILLWDCRCNGVDALEEFD--NRI--------------YGRHNTAPTPS 200 (720)
T ss_pred -cccccchhhhcc-----CCCcceeeccCCCcEEEEEEeccchhhHHHHh--hhh--------------hccccCCCCCC
Confidence 788999999998 67889999999999999999864311100000 000 000000 00
Q ss_pred CeeeeeeccccCccccEEE---EEeecCCCCCcEEEEeeC-CCeEEEEecCCCcceecccccceeeeeecc---CCceeE
Q 025649 152 GKRLHLDYSVGGHTAAASC---VAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNINL---NKKVNW 224 (250)
Q Consensus 152 ~~~~~~~~~~~~h~~~v~~---~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~v~~ 224 (250)
....+.+..-.++...|.+ +.+. .|...||+++. |+.|+|||++............ ...+..| .-.+.+
T Consensus 201 kp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~-~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 201 KPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG-SDKYPTHSKRSVGQVN 276 (720)
T ss_pred chhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCc-ccCccCcccceeeeEE
Confidence 1111122333445554444 4444 58889999887 9999999999875543221111 1122233 224666
Q ss_pred EEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 225 LCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 225 ~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
++... .|.+|++.+.|+.|++||+.
T Consensus 277 L~lDs-sGt~L~AsCtD~sIy~ynm~ 301 (720)
T KOG0321|consen 277 LILDS-SGTYLFASCTDNSIYFYNMR 301 (720)
T ss_pred EEecC-CCCeEEEEecCCcEEEEecc
Confidence 66654 56777777779999999974
No 151
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=1.6e-19 Score=140.39 Aligned_cols=201 Identities=11% Similarity=0.059 Sum_probs=152.7
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 100 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 100 (250)
...+.+++.+|+|+ +|++|..-|++++|++.+.+....+.. |...|.|+.++--.. ..++|++
T Consensus 459 r~G~R~~~vSp~gq-hLAsGDr~GnlrVy~Lq~l~~~~~~eA-------------HesEilcLeyS~p~~---~~kLLAS 521 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQ-HLASGDRGGNLRVYDLQELEYTCFMEA-------------HESEILCLEYSFPVL---TNKLLAS 521 (1080)
T ss_pred ccceEEEEECCCcc-eecccCccCceEEEEehhhhhhhheec-------------ccceeEEEeecCchh---hhHhhhh
Confidence 45789999999999 899999999999999998877766663 578999999985111 3578999
Q ss_pred EeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc--eeEEEeeeeeeccCe-e--------eeeeccccCccccEE
Q 025649 101 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN--IRDAEMEILDQSGGK-R--------LHLDYSVGGHTAAAS 169 (250)
Q Consensus 101 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~--------~~~~~~~~~h~~~v~ 169 (250)
++.|..|++||+.....+......+...|+++.|--.| ..+++ +..|..... . .....+-...+..++
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis-cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS-CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe-ccCchhhheehhccccCceeccccccccccceEE
Confidence 99999999999987666555444556889999998877 55553 333332210 0 000111111235688
Q ss_pred EEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 170 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 170 ~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.++.. |+.+++++++.|+.|+|||+.+++.. +..+...+|.+....+...| .|-|+++.+.|.++.++|+
T Consensus 601 Dm~Vd---p~~k~v~t~cQDrnirif~i~sgKq~------k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 601 DMAVD---PTSKLVVTVCQDRNIRIFDIESGKQV------KSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred EeeeC---CCcceEEEEecccceEEEecccccee------eeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEe
Confidence 99999 88899999999999999999999654 34444556777787888887 8999999999999999996
No 152
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.9e-19 Score=125.49 Aligned_cols=195 Identities=13% Similarity=0.184 Sum_probs=145.9
Q ss_pred eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649 13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD 92 (250)
Q Consensus 13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 92 (250)
+..+. .|.++|++++.+ ++ ++++||.|-+|+|||+++...+..+.. |.+.|+++.|.+ +
T Consensus 36 lF~~~-aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~qlg~ll~-------------HagsitaL~F~~----~ 94 (362)
T KOG0294|consen 36 LFAFS-AHAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQLGILLS-------------HAGSITALKFYP----P 94 (362)
T ss_pred ccccc-ccccceeEEEec--ce-eEeccCCCCcEEEEeccchhhhcceec-------------cccceEEEEecC----C
Confidence 45667 999999999986 55 899999999999999998877766652 578999999997 2
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee------eeeeccCeeeeeeccccCccc
Q 025649 93 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGKRLHLDYSVGGHTA 166 (250)
Q Consensus 93 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~h~~ 166 (250)
.....|++|+.||.|.+|+.........++.+.. .++.++++|.|++.++++ .|+...++...+ ..+. .
T Consensus 95 ~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v-~~L~---~ 169 (362)
T KOG0294|consen 95 LSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV-LNLK---N 169 (362)
T ss_pred cchhheeeecCCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCceEEEEcCCceeeeehhhcCcccee-eccC---C
Confidence 2334899999999999999999988888887764 499999999999988644 334333332221 1121 2
Q ss_pred cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEE
Q 025649 167 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 246 (250)
Q Consensus 167 ~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~v 246 (250)
..+.+.|+ |.|.+++.++.+ .|-+|.+.+.. ++ ........+.++.|- ++..+++|+.|+.|++
T Consensus 170 ~at~v~w~---~~Gd~F~v~~~~-~i~i~q~d~A~---------v~-~~i~~~~r~l~~~~l--~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 170 KATLVSWS---PQGDHFVVSGRN-KIDIYQLDNAS---------VF-REIENPKRILCATFL--DGSELLVGGDNEWISL 233 (362)
T ss_pred cceeeEEc---CCCCEEEEEecc-EEEEEecccHh---------Hh-hhhhccccceeeeec--CCceEEEecCCceEEE
Confidence 23459999 889988877754 79999988852 21 222222456666554 7778999999999999
Q ss_pred EeC
Q 025649 247 YSI 249 (250)
Q Consensus 247 w~~ 249 (250)
||-
T Consensus 234 ~D~ 236 (362)
T KOG0294|consen 234 KDT 236 (362)
T ss_pred ecc
Confidence 984
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.6e-20 Score=152.04 Aligned_cols=206 Identities=9% Similarity=0.090 Sum_probs=153.9
Q ss_pred CCCCeeeEEEcCCCCe---EEEEecCCCeEEEEEccC---CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 20 HSSICSSVQFIPWKPW---EVISGGLDSKLVMWDFSK---GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~---~l~s~s~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
-....+.|+|.+.+.. +|+.|..||.|.+||... +.....+. ....|.+.|..+.|++ .
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la----------~~~~h~G~V~gLDfN~-----~ 127 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLA----------TKSKHTGPVLGLDFNP-----F 127 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHh----------hhcccCCceeeeeccc-----c
Confidence 4567889999998873 599999999999999865 22211111 1223788999999999 4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeec-cCCCCCCccceeecccceeEEEeee----eeeccCeeeeeeccccCccc--
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRS-KSTTKPLKGSQSTSKVNIRDAEMEI----LDQSGGKRLHLDYSVGGHTA-- 166 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~h~~-- 166 (250)
.+++||+|+.||.|.|||+..-+..... .......|.+++|+..-..++..+. ..+|+.+..+.+..+..+.+
T Consensus 128 q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 128 QGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred CCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 6779999999999999999986655544 3334578999999988776664333 23344444455555555443
Q ss_pred cEEEEEeecCCCCCcEEEEeeCCC---eEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCce
Q 025649 167 AASCVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV 243 (250)
Q Consensus 167 ~v~~~~~~p~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 243 (250)
.+..++|+| .+...+++++.|. .|.+||+|... ..++.+.+|...|.++.|++.|..++++++.|+.
T Consensus 208 ~~S~l~WhP--~~aTql~~As~dd~~PviqlWDlR~as--------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ 277 (1049)
T KOG0307|consen 208 HCSVLAWHP--DHATQLLVASGDDSAPVIQLWDLRFAS--------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR 277 (1049)
T ss_pred ceeeeeeCC--CCceeeeeecCCCCCceeEeecccccC--------CchhhhcccccceeeeccCCCCchhhhcccCCCC
Confidence 578899995 3456677776554 79999999864 4556678999999999999999899999999999
Q ss_pred EEEEeCC
Q 025649 244 VKVYSIS 250 (250)
Q Consensus 244 i~vw~~~ 250 (250)
|.+|+.+
T Consensus 278 ii~wN~~ 284 (1049)
T KOG0307|consen 278 IICWNPN 284 (1049)
T ss_pred eeEecCC
Confidence 9999863
No 154
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=5e-20 Score=139.03 Aligned_cols=223 Identities=11% Similarity=0.117 Sum_probs=153.5
Q ss_pred CcEEEEcc--------cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCC
Q 025649 1 MWQIIDIR--------QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNA 71 (250)
Q Consensus 1 ti~iwd~~--------~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~ 71 (250)
+|++|+++ .-+.+.+|+ +|.++|.|+++.+++. .+++|+-||+|+.|++....- -.... ...-..
T Consensus 317 ~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~d----p~vl~~ 390 (577)
T KOG0642|consen 317 TLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYD----PSVLSG 390 (577)
T ss_pred chhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCce-EEEeeccCceeeeeccCCCCCcccccC----cchhcc
Confidence 47889983 235678899 9999999999999999 899999999999998752211 00000 001113
Q ss_pred CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC-CCCCccceeecccc-eeEEE---eee
Q 025649 72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTSKVN-IRDAE---MEI 146 (250)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~---~~~ 146 (250)
.++.|.+.++.+++++ ....|++++.||+++.|+...... ..+... ......++.+...- ...++ .+.
T Consensus 391 ~l~Ghtdavw~l~~s~------~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~ 463 (577)
T KOG0642|consen 391 TLLGHTDAVWLLALSS------TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGY 463 (577)
T ss_pred ceeccccceeeeeecc------cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhccccc
Confidence 4556899999999998 788899999999999999887655 222211 11223333332221 11110 111
Q ss_pred eeeccCeeeeeecccc-------CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC
Q 025649 147 LDQSGGKRLHLDYSVG-------GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 219 (250)
Q Consensus 147 ~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 219 (250)
...........+..+. .-...+.-+... |++.+.+++..|+.|+++|..++ .++.....|.
T Consensus 464 ~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~---~~~~~~~~~hed~~Ir~~dn~~~---------~~l~s~~a~~ 531 (577)
T KOG0642|consen 464 TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH---PTADITFTAHEDRSIRFFDNKTG---------KILHSMVAHK 531 (577)
T ss_pred ccchhhhhhhheeeccccCCCcccccCccceEEec---CCCCeeEecccCCceeccccccc---------ccchheeecc
Confidence 1111111111111111 112346677778 78899999999999999999998 7888889999
Q ss_pred CceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 220 KKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 220 ~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
..++++++.| +|-+|++++.||.+++|.+
T Consensus 532 ~svtslai~~-ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 532 DSVTSLAIDP-NGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ceecceeecC-CCceEEeecCCceeehhhc
Confidence 9999999998 7889999999999999976
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=8.2e-20 Score=134.13 Aligned_cols=209 Identities=12% Similarity=0.082 Sum_probs=150.6
Q ss_pred eeEEEcCCC------CeEEEEecCCCeEEEEEccCC-CCccceecCCCC-------CCCCCCcccCCCceeEEecCCCcc
Q 025649 25 SSVQFIPWK------PWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPE-------NNGNAGQCYNPAFVHAIAIPDADM 90 (250)
Q Consensus 25 ~~l~~~~~~------~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~ 90 (250)
.|++|...+ .+++|.|..|..|.|||+.-- .....+.++... .........|.+.|.+++|+.
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~--- 253 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR--- 253 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc---
Confidence 466665331 139999999999999998632 222222222100 001122334777888888886
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCe-ee----eeeccccCcc
Q 025649 91 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK-RL----HLDYSVGGHT 165 (250)
Q Consensus 91 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~h~ 165 (250)
...+.||+|+.|.+|.+||+.++++...+.. +...|.++.|+|....++..|+.|.+..- .. ..-..++ -.
T Consensus 254 --~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~ 329 (463)
T KOG0270|consen 254 --NFRNVLASGSADKTVKLWDVDTGKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FD 329 (463)
T ss_pred --ccceeEEecCCCceEEEEEcCCCCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-ec
Confidence 3567999999999999999999998888774 45899999999987666556766655321 00 0011111 24
Q ss_pred ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649 166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 245 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 245 (250)
+.|..++|.|++ -..++++..||+|+-+|+|... +++.....|.++|.++++++....+++|++.|+.++
T Consensus 330 g~VEkv~w~~~s--e~~f~~~tddG~v~~~D~R~~~--------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 330 GEVEKVAWDPHS--ENSFFVSTDDGTVYYFDIRNPG--------KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred cceEEEEecCCC--ceeEEEecCCceEEeeecCCCC--------CceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence 678999999643 3578888899999999999964 677788999999999999987788999999999999
Q ss_pred EEeCC
Q 025649 246 VYSIS 250 (250)
Q Consensus 246 vw~~~ 250 (250)
+|++.
T Consensus 400 lw~~~ 404 (463)
T KOG0270|consen 400 LWKFD 404 (463)
T ss_pred EEeec
Confidence 99873
No 156
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=9.5e-21 Score=142.91 Aligned_cols=186 Identities=16% Similarity=0.222 Sum_probs=143.7
Q ss_pred eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649 13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD 92 (250)
Q Consensus 13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 92 (250)
.+.|. ||++.|++++|+.+|. +|++||+|-.+.|||....+.+..+..+ |...|.++.|-| .
T Consensus 43 E~eL~-GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~Tg------------HtaNIFsvKFvP----~ 104 (758)
T KOG1310|consen 43 EAELT-GHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTG------------HTANIFSVKFVP----Y 104 (758)
T ss_pred hhhhc-cccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecc------------cccceeEEeeec----c
Confidence 45678 9999999999999999 8999999999999999988999999888 899999999998 3
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEE
Q 025649 93 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA 172 (250)
Q Consensus 93 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 172 (250)
.+++++++|+.|..|+++|+...+.-. .+.......+-+..|...|..++
T Consensus 105 tnnriv~sgAgDk~i~lfdl~~~~~~~------------------------------~d~~~~~~~~~~~cht~rVKria 154 (758)
T KOG1310|consen 105 TNNRIVLSGAGDKLIKLFDLDSSKEGG------------------------------MDHGMEETTRCWSCHTDRVKRIA 154 (758)
T ss_pred CCCeEEEeccCcceEEEEecccccccc------------------------------cccCccchhhhhhhhhhhhhhee
Confidence 467789999999999999998533111 11111223456778999999999
Q ss_pred eecCCCCC-cEEEEeeCCCeEEEEecCCCcce-ecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 173 FSMFGERG-KYLISGGNDKLVKVWDCSRFQGV-QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 173 ~~p~~~~~-~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
-. |++ +.+.++++||+|+-+|++....- +....+..+......--...++..+|.+..+|++|+.|-..++||.
T Consensus 155 ~~---p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 155 TA---PNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred cC---CCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 98 566 78899999999999999974321 1110111111122222356788899999999999999999999984
No 157
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.9e-19 Score=131.96 Aligned_cols=213 Identities=13% Similarity=0.088 Sum_probs=167.9
Q ss_pred cEEEEcccceeee--eeccCCC-CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCLYK--SLRAGHS-SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~~~--~l~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
.+.||+++.+..+ .+. ++. ..+.....+|+++ +|+..+..|.|.+-...+++.+..++.. +
T Consensus 282 ~ysyDle~ak~~k~~~~~-g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~Kie--------------G 345 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPY-GVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIE--------------G 345 (514)
T ss_pred EEEeeccccccccccCCC-CcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeec--------------c
Confidence 4689999887643 344 554 3577888999999 8999999999999999999999999844 7
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeecc----
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSG---- 151 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---- 151 (250)
.|..+.|+. +++.|++++.+|.|.+||++...++.++.......-.+++.+++|.++++ .|..++.+
T Consensus 346 ~v~~~~fsS------dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 346 VVSDFTFSS------DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred EEeeEEEec------CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence 899999998 99999999999999999999998888777664455567788899999985 33333333
Q ss_pred --CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeC--CCeEEEEecCCCcceecccccceeeeee---ccCCceeE
Q 025649 152 --GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN--DKLVKVWDCSRFQGVQTSINNDLLIKNI---NLNKKVNW 224 (250)
Q Consensus 152 --~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~v~~ 224 (250)
....+++..+..-...|++++|+ +++++|+.+|. +..+++-.+.+.. ....+. ..-+.|++
T Consensus 420 ~~s~~PkPik~~dNLtt~Itsl~Fn---~d~qiLAiaS~~~knalrLVHvPS~T---------VFsNfP~~n~~vg~vtc 487 (514)
T KOG2055|consen 420 FASTNPKPIKTVDNLTTAITSLQFN---HDAQILAIASRVKKNALRLVHVPSCT---------VFSNFPTSNTKVGHVTC 487 (514)
T ss_pred hccCCCCchhhhhhhheeeeeeeeC---cchhhhhhhhhccccceEEEecccee---------eeccCCCCCCcccceEE
Confidence 23445666676667789999999 89999988875 6789999888752 222222 12235999
Q ss_pred EEecCCCCCeEEEeeCCceEEEEeC
Q 025649 225 LCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 225 ~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
|+|+| .+.+|+.|..+|.+.+|.+
T Consensus 488 ~aFSP-~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 488 MAFSP-NSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred EEecC-CCceEEeecCCCceeeEee
Confidence 99998 6779999999999999986
No 158
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=1e-19 Score=136.07 Aligned_cols=211 Identities=18% Similarity=0.212 Sum_probs=162.0
Q ss_pred cEEEEcccc---eeeeeecc-CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649 2 WQIIDIRQH---CLYKSLRA-GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 2 i~iwd~~~~---~~~~~l~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|+|||+... ..+..|.. ...+-|.++..+|||+ .|++|+.-.+|.|||+.........++. ...
T Consensus 442 VKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeastlsiWDLAapTprikaelt-----------ssa 509 (705)
T KOG0639|consen 442 VKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDLAAPTPRIKAELT-----------SSA 509 (705)
T ss_pred EEEeeccCCCCCCccccccccCcccceeeeEecCCCc-eEEeccccceeeeeeccCCCcchhhhcC-----------Ccc
Confidence 799999632 23333431 2456799999999999 7999999999999999765432222211 012
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeecc
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSG 151 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 151 (250)
...++++++| |.+..++++.||.|.|||+.+...+..++.+. ..+.|+.+++||..|-+ +.+||.+.
T Consensus 510 paCyALa~sp------DakvcFsccsdGnI~vwDLhnq~~VrqfqGht-DGascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 510 PACYALAISP------DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT-DGASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred hhhhhhhcCC------ccceeeeeccCCcEEEEEcccceeeecccCCC-CCceeEEecCCCceeecCCCccceeehhhhh
Confidence 3568899998 99999999999999999999988888877764 78999999999998874 34444444
Q ss_pred CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649 152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 231 (250)
Q Consensus 152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 231 (250)
.... ... .....|.++.++ |++.+++.|-..+.+-|-..... ....+..|++-|.++.|.+ -
T Consensus 583 grql---qqh-dF~SQIfSLg~c---P~~dWlavGMens~vevlh~skp----------~kyqlhlheScVLSlKFa~-c 644 (705)
T KOG0639|consen 583 GRQL---QQH-DFSSQIFSLGYC---PTGDWLAVGMENSNVEVLHTSKP----------EKYQLHLHESCVLSLKFAY-C 644 (705)
T ss_pred hhhh---hhh-hhhhhheecccC---CCccceeeecccCcEEEEecCCc----------cceeecccccEEEEEEecc-c
Confidence 3322 221 235679999999 89999999999999888877764 2345667899999999997 8
Q ss_pred CCeEEEeeCCceEEEEeC
Q 025649 232 SENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 232 ~~~l~s~~~d~~i~vw~~ 249 (250)
|+++++.+.|+.+..|..
T Consensus 645 GkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 645 GKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred CceeeecCchhhhhhccC
Confidence 999999999999999975
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-19 Score=135.68 Aligned_cols=195 Identities=12% Similarity=0.087 Sum_probs=153.5
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 102 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 102 (250)
.-.|++...... ++++|+..+.|+|||++ .+.++.+..+ |...|+++.++. ...+||+++
T Consensus 81 ~~~Cv~~~s~S~-y~~sgG~~~~Vkiwdl~-~kl~hr~lkd------------h~stvt~v~YN~------~DeyiAsvs 140 (673)
T KOG4378|consen 81 NAFCVACASQSL-YEISGGQSGCVKIWDLR-AKLIHRFLKD------------HQSTVTYVDYNN------TDEYIASVS 140 (673)
T ss_pred hHHHHhhhhcce-eeeccCcCceeeehhhH-HHHHhhhccC------------CcceeEEEEecC------CcceeEEec
Confidence 345555555556 89999999999999998 4444444435 689999999998 889999999
Q ss_pred CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeeeeee-ccccCccccEEEEEeecCC
Q 025649 103 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLHLD-YSVGGHTAAASCVAFSMFG 177 (250)
Q Consensus 103 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~h~~~v~~~~~~p~~ 177 (250)
..|.|.+..+.++.....+.......+..+.|+|..+.++.+...+ .|+.....++ .-.+.|..+...|.|+|
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsp-- 218 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSP-- 218 (673)
T ss_pred cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecC--
Confidence 9999999999998887777777667888999999998887543322 2333333333 34467999999999996
Q ss_pred CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 178 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 178 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.+..+|++.+.|..|.+||.+.. ..........+...++|.+ +|.+|+.|...|.|..||++
T Consensus 219 sne~l~vsVG~Dkki~~yD~~s~----------~s~~~l~y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 219 SNEALLVSVGYDKKINIYDIRSQ----------ASTDRLTYSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred CccceEEEecccceEEEeecccc----------cccceeeecCCcceeeecC-CceEEEeecCCceEEEEecc
Confidence 56678999999999999999974 2233445566888999997 99999999999999999985
No 160
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=4.3e-19 Score=129.62 Aligned_cols=192 Identities=19% Similarity=0.160 Sum_probs=141.3
Q ss_pred eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC
Q 025649 25 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD 104 (250)
Q Consensus 25 ~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d 104 (250)
..++|+.+|. .|++|+.||++|+|+..+...+..... |...|.++.|+| |++.|++-+.|
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~-------------~~~eV~DL~FS~------dgk~lasig~d 207 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIA-------------HHAEVKDLDFSP------DGKFLASIGAD 207 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHh-------------hcCccccceeCC------CCcEEEEecCC
Confidence 7899999999 899999999999999877665555442 468899999999 99999999999
Q ss_pred CeEEEEeCCCceeEeecc-CCCCCCccceeecccc---e-eEEE-------eeeeeeccCee--eeeeccccCccccEEE
Q 025649 105 GVVDVINIESELNISRSK-STTKPLKGSQSTSKVN---I-RDAE-------MEILDQSGGKR--LHLDYSVGGHTAAASC 170 (250)
Q Consensus 105 ~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~-~~~~-------~~~~~~~~~~~--~~~~~~~~~h~~~v~~ 170 (250)
..+||+.+++..+.... ...+.....+.|+.|+ . ++++ +..++...... .-..++.......|++
T Consensus 208 -~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSs 286 (398)
T KOG0771|consen 208 -SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISS 286 (398)
T ss_pred -ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCccee
Confidence 89999999986655544 3333455666777665 2 2221 12222221111 1111222223346999
Q ss_pred EEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
++.+ ++|++++.|+.||.|.|++..+.+.. ...-..|...|+.+.|+| |.+++++-+.|..+.|..+
T Consensus 287 l~VS---~dGkf~AlGT~dGsVai~~~~~lq~~--------~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 287 LAVS---DDGKFLALGTMDGSVAIYDAKSLQRL--------QYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred EEEc---CCCcEEEEeccCCcEEEEEeceeeee--------EeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEE
Confidence 9999 89999999999999999999997432 223467999999999998 8888999888888777654
No 161
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=3.6e-19 Score=137.46 Aligned_cols=227 Identities=16% Similarity=0.207 Sum_probs=153.3
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCC--eEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP--WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|.+||..+-.....++ ||..+|+|+.|-|+.+ .++++|+.|++|++|.++..........+ + .
T Consensus 35 ~Iav~dp~k~~i~t~l~-GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~------------g-~ 100 (764)
T KOG1063|consen 35 AIAVADPEKILIVTTLD-GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQ------------G-H 100 (764)
T ss_pred eEEEeCcccceeEEecc-CCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeec------------C-c
Confidence 37789988777778888 9999999999998764 26999999999999999855444444433 1 2
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce--eEeeccCCC-CCCccceeecc-cceeEEEeeeeeecc---
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL--NISRSKSTT-KPLKGSQSTSK-VNIRDAEMEILDQSG--- 151 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~--- 151 (250)
...++++.. ......+.+.|+.+++||.+..+ ....+.... .....|++..| .+.++.+.|..+...
T Consensus 101 ~~~~~cv~a------~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~ 174 (764)
T KOG1063|consen 101 CKECVCVVA------RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLY 174 (764)
T ss_pred ceeEEEEEe------eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEe
Confidence 334444543 22223333789999999995544 111221111 23456777777 445555444333221
Q ss_pred ---CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee---------cccc---ccee----
Q 025649 152 ---GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ---------TSIN---NDLL---- 212 (250)
Q Consensus 152 ---~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~---~~~~---- 212 (250)
......+..+.||.+.|.+++|.....+.-+|+++|+|..||||.+.-..... .... ...+
T Consensus 175 s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~ 254 (764)
T KOG1063|consen 175 SSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQ 254 (764)
T ss_pred ccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEE
Confidence 23556778899999999999998533334589999999999999876443110 0000 0001
Q ss_pred ------eeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 213 ------IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 213 ------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
..+.+|...|+++.|+| .+..|++++.|.++.+|.
T Consensus 255 ~~is~eall~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~ 295 (764)
T KOG1063|consen 255 YRISFEALLMGHEDWVYSVWWHP-EGLDLLSASADKSMIIWK 295 (764)
T ss_pred EEEehhhhhcCcccceEEEEEcc-chhhheecccCcceEEEe
Confidence 13359999999999998 777899999999999996
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=1.3e-18 Score=123.39 Aligned_cols=215 Identities=14% Similarity=0.054 Sum_probs=148.9
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc-ccCCCCCEEEEE
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD-MLDKTNKICVVA 101 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~l~~~ 101 (250)
-...+.|+|||. .|++-+.|..+++|++...-.-......................|+.-.|.+.+ ...|+..++++.
T Consensus 51 f~kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 456889999999 899999999999999853110000000000000011111234567777776543 335688999999
Q ss_pred eCCCeEEEEeCCCceeEeeccCCC----CCCccceeecccceeEEE-----eeeeeeccCeeeeeecc-----ccCcccc
Q 025649 102 KGDGVVDVINIESELNISRSKSTT----KPLKGSQSTSKVNIRDAE-----MEILDQSGGKRLHLDYS-----VGGHTAA 167 (250)
Q Consensus 102 ~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-----~~~h~~~ 167 (250)
+.+.-|++||.-+|+.......-. -....++.|+|||.+|+. +..++............ -.+..+.
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999999988765543321 145678999999999984 33344422111111111 2234678
Q ss_pred EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC-CceEEE
Q 025649 168 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT-SKVVKV 246 (250)
Q Consensus 168 v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~v 246 (250)
+.|++|+| .+...++.|+...++-|+.-... .++..+.+|.+.|+.++|.+ +|+.|++|++ |.+|..
T Consensus 210 isc~a~sP--~~~~~~a~gsY~q~~giy~~~~~---------~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 210 ISCFAFSP--MDSKTLAVGSYGQRVGIYNDDGR---------RPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILC 277 (406)
T ss_pred eeeeeccC--CCCcceeeecccceeeeEecCCC---------CceeeecccCCCeeeEEecc-CcCeecccccCCCeEEE
Confidence 99999997 45568999999999999887776 67778889999999999998 8989999884 778999
Q ss_pred EeCC
Q 025649 247 YSIS 250 (250)
Q Consensus 247 w~~~ 250 (250)
||++
T Consensus 278 WDiR 281 (406)
T KOG2919|consen 278 WDIR 281 (406)
T ss_pred Eeeh
Confidence 9985
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=5e-19 Score=123.71 Aligned_cols=205 Identities=11% Similarity=0.111 Sum_probs=147.9
Q ss_pred eeccCCCCCeeeEEEcCCCCeEEEEecCC-------CeEEEEEccCCC---------CccceecCCCCCCCCCCcccCCC
Q 025649 15 SLRAGHSSICSSVQFIPWKPWEVISGGLD-------SKLVMWDFSKGR---------PNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 15 ~l~~~h~~~v~~l~~~~~~~~~l~s~s~d-------g~v~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
.|. .|.+.|..|+-+|..+.+|+|+-.+ ....||.+.... ++..+... +-.
T Consensus 58 vf~-h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldte------------avg 124 (370)
T KOG1007|consen 58 VFF-HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTE------------AVG 124 (370)
T ss_pred hhh-cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHH------------HhC
Confidence 455 6788999999999888688877543 246789886432 12222211 335
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee-EeeccCC----CCCCccceeecc--cceeEEEee--eeee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN-ISRSKST----TKPLKGSQSTSK--VNIRDAEME--ILDQ 149 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~--~~~~ 149 (250)
.|.|+.|.| ++..+++-. |..|.+|++..+.. ....... ......+-+|+| +|..+++.+ ....
T Consensus 125 ~i~cvew~P------ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~ 197 (370)
T KOG1007|consen 125 KINCVEWEP------NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQF 197 (370)
T ss_pred ceeeEEEcC------CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEE
Confidence 789999999 888888875 88999999998665 3332222 224456778888 788887632 2222
Q ss_pred ccCeeeeeeccc-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649 150 SGGKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 228 (250)
Q Consensus 150 ~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 228 (250)
++.++.+....+ .+|...|..+.|+| ....+|++|+.||.|+|||.+..+ .++..+.+|...|+++.|+
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNp--nkq~~lvt~gDdgyvriWD~R~tk--------~pv~el~~HsHWvW~VRfn 267 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNP--NKQHILVTCGDDGYVRIWDTRKTK--------FPVQELPGHSHWVWAVRFN 267 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCC--CceEEEEEcCCCccEEEEeccCCC--------ccccccCCCceEEEEEEec
Confidence 233333332233 46888899999994 335688999999999999999864 5667888999999999999
Q ss_pred CCCCCeEEEeeCCceEEEEeC
Q 025649 229 PTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 229 ~~~~~~l~s~~~d~~i~vw~~ 249 (250)
|...++|++|+.|..|.+|..
T Consensus 268 ~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 268 PEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred CccceEEEecCCCceeEEEec
Confidence 988889999999999999864
No 164
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.7e-18 Score=137.56 Aligned_cols=195 Identities=12% Similarity=0.124 Sum_probs=143.2
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
||.+|...+++.-..|. ..+-++.+++|+.+|+ +++.||.|-.|++-+..+......++ + |.++|
T Consensus 77 tv~~y~fps~~~~~iL~-Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lr-g------------h~apV 141 (933)
T KOG1274|consen 77 TVLRYKFPSGEEDTILA-RFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLR-G------------HDAPV 141 (933)
T ss_pred eEEEeeCCCCCccceee-eeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeec-c------------cCCce
Confidence 45666666666554555 5667899999999999 89999999999999998887777776 3 68999
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC-------CCCCCccceeecccceeEEEeeeeee---c
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS-------TTKPLKGSQSTSKVNIRDAEMEILDQ---S 150 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 150 (250)
.++.+.| ++++||+.+.||.|++||+.++.....+.. .....+..++|+|+|..++..+..+. .
T Consensus 142 l~l~~~p------~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy 215 (933)
T KOG1274|consen 142 LQLSYDP------KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVY 215 (933)
T ss_pred eeeeEcC------CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEE
Confidence 9999999 999999999999999999998776544322 11356778999999777764332211 1
Q ss_pred cCeeeeeecccc--CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649 151 GGKRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 228 (250)
Q Consensus 151 ~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 228 (250)
.....+....+. .+...+..++|+ |+|+|||+++.||.|.|||..+. +. ......|.+++|.
T Consensus 216 ~r~~we~~f~Lr~~~~ss~~~~~~ws---PnG~YiAAs~~~g~I~vWnv~t~---------~~----~~~~~~Vc~~aw~ 279 (933)
T KOG1274|consen 216 SRKGWELQFKLRDKLSSSKFSDLQWS---PNGKYIAASTLDGQILVWNVDTH---------ER----HEFKRAVCCEAWK 279 (933)
T ss_pred ccCCceeheeecccccccceEEEEEc---CCCcEEeeeccCCcEEEEecccc---------hh----ccccceeEEEecC
Confidence 122222222332 244458999999 89999999999999999999983 11 1223467888888
Q ss_pred CCCCC
Q 025649 229 PTESE 233 (250)
Q Consensus 229 ~~~~~ 233 (250)
| +..
T Consensus 280 p-~~n 283 (933)
T KOG1274|consen 280 P-NAN 283 (933)
T ss_pred C-CCC
Confidence 7 443
No 165
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=2e-18 Score=133.43 Aligned_cols=210 Identities=15% Similarity=0.094 Sum_probs=150.6
Q ss_pred eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
..+. ||.+.|++++|+|.|+ +|++.|.|.+-|++-.- |+... +. +......|--.++|+++-+
T Consensus 355 ~~iS-GH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~w-g~q~~-wH-------EiaRPQiHGyDl~c~~~vn------ 417 (764)
T KOG1063|consen 355 PVIS-GHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARW-GRQQE-WH-------EIARPQIHGYDLTCLSFVN------ 417 (764)
T ss_pred cccc-cccccceeeeecCCCC-EEEEeccccceeeeccc-ccccc-ee-------eecccccccccceeeehcc------
Confidence 4456 9999999999999999 89999999999999765 22221 21 1112223455677788775
Q ss_pred CCCEEEEEeCCCeEEEEeCCCce----------e-------E-------------eec--------------c-------
Q 025649 94 TNKICVVAKGDGVVDVINIESEL----------N-------I-------------SRS--------------K------- 122 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~----------~-------~-------------~~~--------------~------- 122 (250)
....+++|...+.+|+|+..... . + ... +
T Consensus 418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p 497 (764)
T KOG1063|consen 418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP 497 (764)
T ss_pred CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence 57788899999999999875310 0 0 000 0
Q ss_pred ------------------------CCCCCCccceeecccceeEEEeee--------eeeccCeeeeeeccccCccccEEE
Q 025649 123 ------------------------STTKPLKGSQSTSKVNIRDAEMEI--------LDQSGGKRLHLDYSVGGHTAAASC 170 (250)
Q Consensus 123 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~h~~~v~~ 170 (250)
..+...+.+++.+|+|+++++.+- .-.+....-...+.+.+|.-.|+.
T Consensus 498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~ 577 (764)
T KOG1063|consen 498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTR 577 (764)
T ss_pred hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEE
Confidence 012335677888999999986321 111222223334578999999999
Q ss_pred EEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
++|| |+|++|++.|.|+++.+|......... ......+.|+.-|++..|+| ++.+|+|+|+|.+|++|..
T Consensus 578 l~FS---pdg~~LLsvsRDRt~sl~~~~~~~~~e-----~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 578 LAFS---PDGRYLLSVSRDRTVSLYEVQEDIKDE-----FRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEE 647 (764)
T ss_pred EEEC---CCCcEEEEeecCceEEeeeeecccchh-----hhhccccccceEEEEcccCc-ccceeEEecCCceEEEEec
Confidence 9999 999999999999999999886543221 12334678999999999998 8889999999999999975
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=7.3e-19 Score=124.69 Aligned_cols=203 Identities=14% Similarity=0.164 Sum_probs=143.2
Q ss_pred CCCeeeEEEc-------CCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 21 SSICSSVQFI-------PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 21 ~~~v~~l~~~-------~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
...|...+|- |+.. ++++.+.+.-|.+||..+|+....+..-. . .-.-...++++|+|
T Consensus 104 g~tvydy~wYs~M~s~qP~t~-l~a~ssr~~PIh~wdaftG~lraSy~~yd--h------~de~taAhsL~Fs~------ 168 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTN-LFAVSSRDQPIHLWDAFTGKLRASYRAYD--H------QDEYTAAHSLQFSP------ 168 (406)
T ss_pred CCEEEEEEeeeccccCCCccc-eeeeccccCceeeeeccccccccchhhhh--h------HHhhhhheeEEecC------
Confidence 3456666664 5555 89999999999999999998877665210 0 00112457899999
Q ss_pred CCCEEEEEeCCCeEEEEeC-CCceeE------eeccCCCCCCccceeecccceeEEEeeeeeec----cCeeeeeecccc
Q 025649 94 TNKICVVAKGDGVVDVINI-ESELNI------SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDYSVG 162 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 162 (250)
||.+|++|. ...|++||+ +.|... ...+......+.+++|+|-...+..+++.... ......++..+.
T Consensus 169 DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg 247 (406)
T KOG2919|consen 169 DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG 247 (406)
T ss_pred CCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec
Confidence 999999875 588999999 555422 11123335788999999977644445554333 223445667778
Q ss_pred CccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecCCCcceecccccceeeeeeccCC-ceeEEEec-CCCCCeEEEee
Q 025649 163 GHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTT-PTESENLVVCD 239 (250)
Q Consensus 163 ~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~~~l~s~~ 239 (250)
+|.+.|+.+.|. ++|+.|++|+. |-.|..||++... .++-.+..|.. .-..|.|. .+++++|++|+
T Consensus 248 gh~gGvThL~~~---edGn~lfsGaRk~dkIl~WDiR~~~--------~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~ 316 (406)
T KOG2919|consen 248 GHGGGVTHLQWC---EDGNKLFSGARKDDKILCWDIRYSR--------DPVYALERHVGDTNQRILFDLDPKGEILASGD 316 (406)
T ss_pred ccCCCeeeEEec---cCcCeecccccCCCeEEEEeehhcc--------chhhhhhhhccCccceEEEecCCCCceeeccC
Confidence 999999999999 89999999986 7799999999864 34444555544 22223232 13789999999
Q ss_pred CCceEEEEeCC
Q 025649 240 TSKVVKVYSIS 250 (250)
Q Consensus 240 ~d~~i~vw~~~ 250 (250)
.||.|++||+.
T Consensus 317 tdG~V~vwdlk 327 (406)
T KOG2919|consen 317 TDGSVRVWDLK 327 (406)
T ss_pred CCccEEEEecC
Confidence 99999999973
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=4.9e-18 Score=123.43 Aligned_cols=174 Identities=13% Similarity=0.150 Sum_probs=135.3
Q ss_pred CcEEEEcccc-------eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649 1 MWQIIDIRQH-------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 1 ti~iwd~~~~-------~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 73 (250)
||.||++..+ +.+..|. ||...|--++|+|.-.+.|+|++.|.+|.+||+.+|+.+.++.
T Consensus 105 ~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~------------ 171 (472)
T KOG0303|consen 105 KVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD------------ 171 (472)
T ss_pred eEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC------------
Confidence 5889998644 3466788 9999999999999988799999999999999999999877776
Q ss_pred ccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---------
Q 025649 74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM--------- 144 (250)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 144 (250)
|++.|+++.|+- +|.+|++.+.|+.||+||.++++.......+.........|-.+|. +++.
T Consensus 172 --hpd~i~S~sfn~------dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq 242 (472)
T KOG0303|consen 172 --HPDMVYSMSFNR------DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQ 242 (472)
T ss_pred --CCCeEEEEEecc------CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccc
Confidence 799999999998 9999999999999999999999999888777777888888888888 4433
Q ss_pred -eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEE-eeCCCeEEEEecCCC
Q 025649 145 -EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS-GGNDKLVKVWDCSRF 200 (250)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s-~~~d~~i~iwd~~~~ 200 (250)
+.|+.......-.+.++.... .|.---|. ++..++.. |-.|+.|+.|.+...
T Consensus 243 ~aLwdp~nl~eP~~~~elDtSn-Gvl~PFyD---~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 243 IALWDPNNLEEPIALQELDTSN-GVLLPFYD---PDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eeccCcccccCcceeEEeccCC-ceEEeeec---CCCCEEEEEecCCcceEEEEecCC
Confidence 233333333322334444332 33322334 66666554 556999999999875
No 168
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.1e-18 Score=122.21 Aligned_cols=166 Identities=12% Similarity=0.043 Sum_probs=113.6
Q ss_pred CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEee--ccCC-CCCCccceeecccceeEEEeeeee
Q 025649 72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR--SKST-TKPLKGSQSTSKVNIRDAEMEILD 148 (250)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 148 (250)
.+..|.+.|++++|+. +|++|++++.|+.|++|+++....... +... +-...+.+.|.||.+.++. ....
T Consensus 81 ~LKgH~~~vt~~~FsS------dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv-~~~~ 153 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSS------DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVV-SVKR 153 (420)
T ss_pred hhhccCCceeeeEEcC------CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEE-EEcc
Confidence 3344889999999998 999999999999999999987332211 1111 1135677889999877663 1111
Q ss_pred ec-----------cCe---eeeee---ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee-------
Q 025649 149 QS-----------GGK---RLHLD---YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ------- 204 (250)
Q Consensus 149 ~~-----------~~~---~~~~~---~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~------- 204 (250)
+. ++. ..... .--+.|.-.+..+-.. .++.+|++++.|..|.+||++ ++.++
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA---~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~ 229 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA---GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS 229 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec---CCceEEEEecCCCcEEEEecC-Cceeeeeccccc
Confidence 11 110 00000 0112355566666666 678999999999999999998 44332
Q ss_pred ----------------------------------cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 205 ----------------------------------TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 205 ----------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+...-.....+.+|...|.+++|++ +...+++.|.||+++|||.
T Consensus 230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeec
Confidence 0111223346789999999999997 7888999999999999996
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=6e-18 Score=118.46 Aligned_cols=219 Identities=11% Similarity=0.052 Sum_probs=155.8
Q ss_pred cccceeeeeeccCCCCCeeeEEEcCCCC----eEEEEecCCCeEEEEEccCCCC----ccceecCCCCCCCCCCcccCCC
Q 025649 7 IRQHCLYKSLRAGHSSICSSVQFIPWKP----WEVISGGLDSKLVMWDFSKGRP----NKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 7 ~~~~~~~~~l~~~h~~~v~~l~~~~~~~----~~l~s~s~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
.++++.+..-...|.-+++.+.|.|+.. .+|||++. .+|+|.+...+. ...+... .-.-+..
T Consensus 82 ~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~--------kns~~~a 151 (364)
T KOG0290|consen 82 EDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNN--------KNSEFCA 151 (364)
T ss_pred cCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccC--------cccccCC
Confidence 3455555443335999999999999862 36666654 799999874221 1122211 0111445
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee--EeeccCCCCCCccceeecccceeEEEeeeeeec------
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN--ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS------ 150 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 150 (250)
++++..|+. .+.+++.+++-|.+..+||++++.. +.+....+...+..++|...+..+++....|+.
T Consensus 152 PlTSFDWne-----~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 152 PLTSFDWNE-----VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred ccccccccc-----CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 788888886 5889999999999999999999743 444445566899999999988777654444443
Q ss_pred -cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC-CeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649 151 -GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 228 (250)
Q Consensus 151 -~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 228 (250)
..+-...+.+-.....+...++|++ .+-+++|+-..| ..|.|-|++... .++..+.+|.+.|+.++|.
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnk--qDpnymATf~~dS~~V~iLDiR~P~--------tpva~L~~H~a~VNgIaWa 296 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNK--QDPNYMATFAMDSNKVVILDIRVPC--------TPVARLRNHQASVNGIAWA 296 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCc--CCchHHhhhhcCCceEEEEEecCCC--------cceehhhcCcccccceEec
Confidence 3332233333333345678889985 345688876554 579999999863 5667889999999999999
Q ss_pred CCCCCeEEEeeCCceEEEEeCC
Q 025649 229 PTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 229 ~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
|.....|++++.|..+.+||+.
T Consensus 297 PhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 297 PHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred CCCCceeeecCCcceEEEEecc
Confidence 9888999999999999999974
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=2.5e-17 Score=120.04 Aligned_cols=227 Identities=14% Similarity=0.097 Sum_probs=147.5
Q ss_pred cEEEEcccce---------eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCC--
Q 025649 2 WQIIDIRQHC---------LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN-- 70 (250)
Q Consensus 2 i~iwd~~~~~---------~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-- 70 (250)
|+||-++.++ .+..|. .|...|+++.|+|+|. +|+||+++|.|.+|....-... --........+.
T Consensus 38 iriW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~~~-~~d~e~~~~ke~w~ 114 (434)
T KOG1009|consen 38 IRIWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVRIF-DADTEADLNKEKWV 114 (434)
T ss_pred eeeeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcCCc-cccchhhhCccceE
Confidence 7889876332 345677 8999999999999999 9999999999999987631110 000000000000
Q ss_pred --CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCC-----------------------
Q 025649 71 --AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT----------------------- 125 (250)
Q Consensus 71 --~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----------------------- 125 (250)
.....|.+.++.++|+| ++..+++++.|+.+++||+..|+.......+.
T Consensus 115 v~k~lr~h~~diydL~Ws~------d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~ 188 (434)
T KOG1009|consen 115 VKKVLRGHRDDIYDLAWSP------DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRH 188 (434)
T ss_pred EEEEecccccchhhhhccC------CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcc
Confidence 12233778999999999 99999999999999999999876544322211
Q ss_pred -----------------------------------------CCCccceeecccceeEEE-eeeeeeccC-----------
Q 025649 126 -----------------------------------------KPLKGSQSTSKVNIRDAE-MEILDQSGG----------- 152 (250)
Q Consensus 126 -----------------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------- 152 (250)
+.....++|+|+|.++++ .+.......
T Consensus 189 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr 268 (434)
T KOG1009|consen 189 PEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR 268 (434)
T ss_pred cceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecc
Confidence 011223456777777764 222211110
Q ss_pred -eeeeeeccccCccccEEEEEeecC---------------CCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee
Q 025649 153 -KRLHLDYSVGGHTAAASCVAFSMF---------------GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 216 (250)
Q Consensus 153 -~~~~~~~~~~~h~~~v~~~~~~p~---------------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 216 (250)
...++...+.+-..++..+.|+|. -|-+..++.++ ...|++||.++.. ++...-.
T Consensus 269 k~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~--------P~~~v~n 339 (434)
T KOG1009|consen 269 KDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLE--------PLAVVDN 339 (434)
T ss_pred ccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEecccccc--------ceEEEee
Confidence 111233344555566667777651 12233455555 5689999999863 3333445
Q ss_pred ccCCceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649 217 NLNKKVNWLCTTPTESENLVVCDTSKVVKVY 247 (250)
Q Consensus 217 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw 247 (250)
-|-..++.++|++ ||..++..|.||...+-
T Consensus 340 ihy~~iTDiaws~-dg~~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 340 IHYSAITDIAWSD-DGSVLLVSSTDGFCSLV 369 (434)
T ss_pred eeeeeecceeecC-CCcEEEEeccCCceEEE
Confidence 6888999999997 99999999999977654
No 171
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=7.5e-17 Score=116.34 Aligned_cols=188 Identities=16% Similarity=0.162 Sum_probs=139.5
Q ss_pred eeeEEEcCCCCeEEEEecCC--CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 24 CSSVQFIPWKPWEVISGGLD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 24 v~~l~~~~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
|-.+-|+.. ++|..+.+ ..+++.+++.+..+..+.+ +..|.++.++ .++|+++
T Consensus 49 IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f--------------pt~IL~VrmN--------r~RLvV~ 103 (391)
T KOG2110|consen 49 IVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKTTICEIFF--------------PTSILAVRMN--------RKRLVVC 103 (391)
T ss_pred EEEeecccc---eeEEEecCCCceEEEEEcccCceEEEEec--------------CCceEEEEEc--------cceEEEE
Confidence 444445544 55555444 4589999988888877774 4778888886 4566666
Q ss_pred eCCCeEEEEeCCCceeEeeccCCC--CCCccceeecccceeEEEe-----eeeeeccCeeeeeeccccCccccEEEEEee
Q 025649 102 KGDGVVDVINIESELNISRSKSTT--KPLKGSQSTSKVNIRDAEM-----EILDQSGGKRLHLDYSVGGHTAAASCVAFS 174 (250)
Q Consensus 102 ~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 174 (250)
-.+. |+|||+++.+.+..+.... ...+..+++++.+.+++.- |..-..+....+....+..|++.+.+++|+
T Consensus 104 Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs 182 (391)
T KOG2110|consen 104 LEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS 182 (391)
T ss_pred Eccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEEC
Confidence 5544 9999999999888877653 3446666666677788852 233333445666777888999999999999
Q ss_pred cCCCCCcEEEEeeCCCe-EEEEecCCCcceecccccceeeeee-cc-CCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 175 MFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSINNDLLIKNI-NL-NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 175 p~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
++|.+|||+|..|+ ||||.+.+++... .+. +. ...|.+++|+| ++++|++.|..++|.+|.+.
T Consensus 183 ---~~G~llATASeKGTVIRVf~v~~G~kl~---------eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 183 ---PDGTLLATASEKGTVIRVFSVPEGQKLY---------EFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred ---CCCCEEEEeccCceEEEEEEcCCccEee---------eeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEec
Confidence 99999999999885 8999999985443 221 21 34689999998 89999999999999999863
No 172
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=1.2e-17 Score=123.48 Aligned_cols=220 Identities=15% Similarity=0.159 Sum_probs=151.4
Q ss_pred CcEEEEcccc----eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649 1 MWQIIDIRQH----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 1 ti~iwd~~~~----~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
+|-+||+.+. .-+..+. .|..+|.+|.|+|.+...+++.|.||+|++-|++++..-..+... ..
T Consensus 211 ~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~-----------~d 278 (498)
T KOG4328|consen 211 QVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD-----------TD 278 (498)
T ss_pred cEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC-----------cc
Confidence 4679999522 2345566 899999999999988778999999999999999876543333321 01
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe-------eeeee
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM-------EILDQ 149 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 149 (250)
...+.++.|+. +...++.+..=|...+||++++........-++..|.+++++|...+++.. ..||.
T Consensus 279 ~~~fs~~d~~~------e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~ 352 (498)
T KOG4328|consen 279 NIWFSSLDFSA------ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDL 352 (498)
T ss_pred ceeeeeccccC------CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeeh
Confidence 34567777776 666666666667999999998766443333334599999999988776643 34555
Q ss_pred ccCeeee-eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC------ce
Q 025649 150 SGGKRLH-LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK------KV 222 (250)
Q Consensus 150 ~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~v 222 (250)
+...... ++-....|...|.+..|| |.+-.|+|.+.|..|+|||..-.... .+......|.. ..
T Consensus 353 R~l~~K~sp~lst~~HrrsV~sAyFS---Ps~gtl~TT~~D~~IRv~dss~~sa~------~~p~~~I~Hn~~t~RwlT~ 423 (498)
T KOG4328|consen 353 RQLRGKASPFLSTLPHRRSVNSAYFS---PSGGTLLTTCQDNEIRVFDSSCISAK------DEPLGTIPHNNRTGRWLTP 423 (498)
T ss_pred hhhcCCCCcceecccccceeeeeEEc---CCCCceEeeccCCceEEeeccccccc------CCccceeeccCcccccccc
Confidence 4433222 233344699999999999 55555999999999999998511100 11122333332 23
Q ss_pred eEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 223 NWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 223 ~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
...+|.| +..+|++|-.-..|-|+|
T Consensus 424 fKA~W~P-~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 424 FKAAWDP-DYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred hhheeCC-CccEEEEeccCcceeEEc
Confidence 4457888 777899998888888886
No 173
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.79 E-value=8e-17 Score=120.69 Aligned_cols=198 Identities=13% Similarity=0.150 Sum_probs=151.1
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
+|.+....++.+|+.. +++|++.|+.+++|+ ..++..+...+ +++.++.|+| .| .+
T Consensus 366 gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~~k~~wt~~~~--------------d~~~~~~fhp------sg-~v 421 (626)
T KOG2106|consen 366 GHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--DHKLEWTKIIE--------------DPAECADFHP------SG-VV 421 (626)
T ss_pred ecccceeeEEcCCChh-heeeccCcceEEEcc--CCceeEEEEec--------------CceeEeeccC------cc-eE
Confidence 8999999999999998 899999999999999 55666666544 6789999999 77 99
Q ss_pred EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc--------CeeeeeeccccCccccEEE
Q 025649 99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG--------GKRLHLDYSVGGHTAAASC 170 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~h~~~v~~ 170 (250)
+.|...|...+.|.++...+..-.. ..++..++|+|+|.+++ +++-|... ......+....+ .+|+.
T Consensus 422 a~Gt~~G~w~V~d~e~~~lv~~~~d--~~~ls~v~ysp~G~~lA-vgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ith 496 (626)
T KOG2106|consen 422 AVGTATGRWFVLDTETQDLVTIHTD--NEQLSVVRYSPDGAFLA-VGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITH 496 (626)
T ss_pred EEeeccceEEEEecccceeEEEEec--CCceEEEEEcCCCCEEE-EecCCCeEEEEEECCCCcEEEEeeeecC--ceeEE
Confidence 9999999999999999555443333 58999999999999999 66655442 122222333333 89999
Q ss_pred EEeecCCCCCcEEEEeeCCCeEEEEecCCCccee----------------------------------------------
Q 025649 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ---------------------------------------------- 204 (250)
Q Consensus 171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---------------------------------------------- 204 (250)
+.|+ +|++++.+-+.|-.|..|.........
T Consensus 497 LDwS---~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g 573 (626)
T KOG2106|consen 497 LDWS---SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFG 573 (626)
T ss_pred eeec---CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCc
Confidence 9999 899999999999999999432221110
Q ss_pred --------cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 205 --------TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 205 --------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
-.+.......+.+|++-|.+++|.-.|. .+++.+.|..|..|++
T Consensus 574 ~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~-~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 574 KVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS-HLISTGKDTSIMQWRL 625 (626)
T ss_pred eEEEEccccCCCcccceeeccccceeEEEEEeeCCc-eEEecCCCceEEEEEe
Confidence 0111223356678999999999997554 5666559999999987
No 174
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=2.2e-17 Score=117.47 Aligned_cols=177 Identities=14% Similarity=0.180 Sum_probs=128.7
Q ss_pred eeeccCCCCCeeeEEEcC----CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649 14 KSLRAGHSSICSSVQFIP----WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 89 (250)
Q Consensus 14 ~~l~~~h~~~v~~l~~~~----~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (250)
..++..|+.+|..++|++ +....+++++. ..+.+|.....-.++.++.-. ..-+++..+.++|+-..
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~--------D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYA--------DEDHDESFYTCSWSYDS 101 (385)
T ss_pred eehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeecc--------CCCCCcceEEEEEEecC
Confidence 334447889999999984 33336666665 478888875433223332110 00134455566665311
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEE
Q 025649 90 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 169 (250)
Q Consensus 90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 169 (250)
. ...-++|+|+.-|.|++.|+.+++ +...+.+|...|+
T Consensus 102 ~--~~~p~la~~G~~GvIrVid~~~~~----------------------------------------~~~~~~ghG~sIN 139 (385)
T KOG1034|consen 102 N--TGNPFLAAGGYLGVIRVIDVVSGQ----------------------------------------CSKNYRGHGGSIN 139 (385)
T ss_pred C--CCCeeEEeecceeEEEEEecchhh----------------------------------------hccceeccCccch
Confidence 0 024578888899999999998654 3346789999999
Q ss_pred EEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 170 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 170 ~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.+.+.| .+-++++++|.|..|++|++++..++ ..+....+|...|.++.|++ ++.+|++++.|..|++|++
T Consensus 140 eik~~p--~~~qlvls~SkD~svRlwnI~~~~Cv------~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l 210 (385)
T KOG1034|consen 140 EIKFHP--DRPQLVLSASKDHSVRLWNIQTDVCV------AVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRL 210 (385)
T ss_pred hhhcCC--CCCcEEEEecCCceEEEEeccCCeEE------EEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEec
Confidence 999996 34579999999999999999998665 44555678999999999997 8999999999999999997
Q ss_pred C
Q 025649 250 S 250 (250)
Q Consensus 250 ~ 250 (250)
+
T Consensus 211 ~ 211 (385)
T KOG1034|consen 211 N 211 (385)
T ss_pred C
Confidence 4
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2e-17 Score=113.24 Aligned_cols=176 Identities=16% Similarity=0.203 Sum_probs=118.5
Q ss_pred eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC----CccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649 13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR----PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA 88 (250)
Q Consensus 13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 88 (250)
+...+ +|.++|..++|..+ +|++|+. |.|+-|..+... +...++...|... ....-..|++|...|
T Consensus 55 iv~eq-ahdgpiy~~~f~d~---~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~----~~~evPeINam~ldP- 124 (325)
T KOG0649|consen 55 IVPEQ-AHDGPIYYLAFHDD---FLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQV----DAVEVPEINAMWLDP- 124 (325)
T ss_pred eeecc-ccCCCeeeeeeehh---heeeccC-ceEEEeeehhhhhhccchhhhhhcCcccc----CcccCCccceeEecc-
Confidence 44456 99999999999943 6777775 999999876432 1222222211111 112234577777777
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccE
Q 025649 89 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA 168 (250)
Q Consensus 89 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 168 (250)
..+-++.++.|+.++-||+++|+. .+++++|.+.|
T Consensus 125 -----~enSi~~AgGD~~~y~~dlE~G~i----------------------------------------~r~~rGHtDYv 159 (325)
T KOG0649|consen 125 -----SENSILFAGGDGVIYQVDLEDGRI----------------------------------------QREYRGHTDYV 159 (325)
T ss_pred -----CCCcEEEecCCeEEEEEEecCCEE----------------------------------------EEEEcCCccee
Confidence 666666666999999999998763 34789999999
Q ss_pred EEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC-ceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649 169 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENLVVCDTSKVVKVY 247 (250)
Q Consensus 169 ~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~i~vw 247 (250)
.++.-. .....+++|++||++|+||++++++++....-+-......|.+ .|-+++. +...|++|+ ...+.+|
T Consensus 160 H~vv~R---~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslw 232 (325)
T KOG0649|consen 160 HSVVGR---NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLW 232 (325)
T ss_pred eeeeec---ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCceeEE
Confidence 999875 4456799999999999999999987754433222223334433 3666655 344666665 5568888
Q ss_pred eCC
Q 025649 248 SIS 250 (250)
Q Consensus 248 ~~~ 250 (250)
.++
T Consensus 233 hLr 235 (325)
T KOG0649|consen 233 HLR 235 (325)
T ss_pred ecc
Confidence 874
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=6.9e-18 Score=122.91 Aligned_cols=178 Identities=15% Similarity=0.213 Sum_probs=136.5
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc---ceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK---IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI 97 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (250)
..+|..+.|.+++.+.|+||+.|..|++|-+..+..-. .+.+ ...+..|...|+.+.|+| +|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y-------~s~Ls~H~~aVN~vRf~p------~gel 79 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEY-------LSSLSRHTRAVNVVRFSP------DGEL 79 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEE-------eecccCCcceeEEEEEcC------CcCe
Confidence 45899999999887689999999999999987654332 2221 123445889999999999 9999
Q ss_pred EEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCC
Q 025649 98 CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG 177 (250)
Q Consensus 98 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 177 (250)
|++|+.+|.|.+|-...-... ... . .... ..+.-...+.+.+|...|..++|+
T Consensus 80 LASg~D~g~v~lWk~~~~~~~----~~d--~--e~~~----------------~ke~w~v~k~lr~h~~diydL~Ws--- 132 (434)
T KOG1009|consen 80 LASGGDGGEVFLWKQGDVRIF----DAD--T--EADL----------------NKEKWVVKKVLRGHRDDIYDLAWS--- 132 (434)
T ss_pred eeecCCCceEEEEEecCcCCc----ccc--c--hhhh----------------CccceEEEEEecccccchhhhhcc---
Confidence 999999999999987641100 000 0 0000 011122345677899999999999
Q ss_pred CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 178 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 178 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
|+++++++++.|..+++||+..+ .+.....+|..-|..++|.| -++++++-+.|...+.+.
T Consensus 133 ~d~~~l~s~s~dns~~l~Dv~~G---------~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 133 PDSNFLVSGSVDNSVRLWDVHAG---------QLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFS 193 (434)
T ss_pred CCCceeeeeeccceEEEEEeccc---------eeEeeccccccccceeecch-hhhhhhhhccCcccceee
Confidence 89999999999999999999998 77778889999999999998 778899988887666554
No 177
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.9e-17 Score=118.27 Aligned_cols=150 Identities=18% Similarity=0.233 Sum_probs=115.7
Q ss_pred EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc
Q 025649 36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 115 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 115 (250)
.++++-..|.|++||..+++.+..++.. +..+..+.|.. ......+.+++.||+|++||++..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~-------------~~~~N~vrf~~----~ds~h~v~s~ssDG~Vr~wD~Rs~ 104 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGP-------------PATTNGVRFIS----CDSPHGVISCSSDGTVRLWDIRSQ 104 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCC-------------CCcccceEEec----CCCCCeeEEeccCCeEEEEEeecc
Confidence 6888888999999999999999999844 66777787764 114678999999999999999975
Q ss_pred eeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCcc-ccEEEEEeecCCCCCcEEEEee----CCC
Q 025649 116 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCVAFSMFGERGKYLISGG----NDK 190 (250)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~l~s~~----~d~ 190 (250)
.....+ .+..+. .+-.|++.+ -+++.+++|. .|-
T Consensus 105 ~e~a~~--------------------------------------~~~~~~~~~f~~ld~n---ck~~ii~~GtE~~~s~A 143 (376)
T KOG1188|consen 105 AESARI--------------------------------------SWTQQSGTPFICLDLN---CKKNIIACGTELTRSDA 143 (376)
T ss_pred hhhhhe--------------------------------------eccCCCCCcceEeecc---CcCCeEEeccccccCce
Confidence 433221 222333 345666665 4667787775 466
Q ss_pred eEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 191 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 191 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.|.+||.+..++ .+-.....|...|+++.|+|.+..+|++||.||.|.|||+.
T Consensus 144 ~v~lwDvR~~qq-------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 144 SVVLWDVRSEQQ-------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred EEEEEEeccccc-------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 899999999753 13334568999999999999999999999999999999974
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=2.3e-15 Score=118.02 Aligned_cols=212 Identities=22% Similarity=0.324 Sum_probs=155.6
Q ss_pred CcEEEEccc-ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC-CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~-~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
++++||... ......+. .|...|..++|+|++. .+++++. |+.+++|+...+..+..+.. |..
T Consensus 135 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 199 (466)
T COG2319 135 TVKLWDLSTPGKLIRTLE-GHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAG-------------HTD 199 (466)
T ss_pred cEEEEEecCCCeEEEEEe-cCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeecc-------------CCC
Confidence 478999987 78888888 9999999999999999 7888885 99999999998776666652 467
Q ss_pred ceeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCCceeEe-eccCCCCCCccceeecccceeEEE------eeeeeec
Q 025649 79 FVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKVNIRDAE------MEILDQS 150 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 150 (250)
.+.+++++| ++. .+++++.|+.|++||...+.... ....+. ... ...|+|++..+++ ...++..
T Consensus 200 ~v~~~~~~~------~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 200 PVSSLAFSP------DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS-DSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred ceEEEEEcC------CcceEEEEecCCCcEEEEECCCCcEEeeecCCCC-cce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 899999998 777 55555999999999988666665 333332 222 2289999866552 2223322
Q ss_pred cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee--eccCCceeEEEec
Q 025649 151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN--INLNKKVNWLCTT 228 (250)
Q Consensus 151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~ 228 (250)
.... .+..+.+|...+.++.|. |++..+++++.|+.+.+||..... ..... ..|...+..+.+
T Consensus 272 ~~~~--~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~- 336 (466)
T COG2319 272 SSSS--LLRTLSGHSSSVLSVAFS---PDGKLLASGSSDGTVRLWDLETGK---------LLSSLTLKGHEGPVSSLSF- 336 (466)
T ss_pred CCCc--EEEEEecCCccEEEEEEC---CCCCEEEEeeCCCcEEEEEcCCCc---------eEEEeeecccCCceEEEEE-
Confidence 2222 122226788999999999 777888888889999999988863 22233 377778899988
Q ss_pred CCCCCeEEEe-eCCceEEEEeCC
Q 025649 229 PTESENLVVC-DTSKVVKVYSIS 250 (250)
Q Consensus 229 ~~~~~~l~s~-~~d~~i~vw~~~ 250 (250)
+.++..++.+ ..|+.+.+|++.
T Consensus 337 ~~~~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 337 SPDGSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred CCCCCEEEEeecCCCcEEeeecC
Confidence 5453555555 678899999863
No 179
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=8.7e-18 Score=129.36 Aligned_cols=150 Identities=13% Similarity=0.229 Sum_probs=117.7
Q ss_pred ecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE
Q 025649 40 GGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 118 (250)
Q Consensus 40 ~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 118 (250)
.+..|.|-||+++.. +..... .-..+....|+.+.|.| .|...|++++.||.|++|.+..+-..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv----------~p~l~Ngt~vtDl~WdP-----FD~~rLAVa~ddg~i~lWr~~a~gl~ 663 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGV----------MPGLFNGTLVTDLHWDP-----FDDERLAVATDDGQINLWRLTANGLP 663 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCccc----------ccccccCceeeecccCC-----CChHHeeecccCceEEEEEeccCCCC
Confidence 455789999999753 221111 01112356789999999 68999999999999999999864322
Q ss_pred eeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC
Q 025649 119 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 198 (250)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~ 198 (250)
.. ...+...+..|...|+++.|+|. -.+.|++++.|-+|++||++
T Consensus 664 e~---------------------------------~~tPe~~lt~h~eKI~slRfHPL--AadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 664 EN---------------------------------EMTPEKILTIHGEKITSLRFHPL--AADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred cc---------------------------------cCCcceeeecccceEEEEEecch--hhhHhhhhhccceeeeeehh
Confidence 11 11223467789999999999963 35789999999999999999
Q ss_pred CCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 199 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
++ .....+.+|.+.|..++|+| +|+.+++.+.||+|++|+-
T Consensus 709 ~~---------~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 709 NA---------KLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred hh---------hhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCC
Confidence 98 55668899999999999998 9999999999999999974
No 180
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=9.1e-17 Score=125.95 Aligned_cols=205 Identities=16% Similarity=0.050 Sum_probs=130.0
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC---CeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD---SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
+|.+||..... ...+. .|...+.+.+|+|+|+ .|+.++.+ ..|.+||+.+++....... +
T Consensus 185 ~i~i~d~dg~~-~~~lt-~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--------------~ 247 (429)
T PRK01742 185 EVRVADYDGFN-QFIVN-RSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASF--------------R 247 (429)
T ss_pred EEEEECCCCCC-ceEec-cCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecC--------------C
Confidence 36788875443 55677 7888999999999999 67776543 4799999987754322211 1
Q ss_pred CceeEEecCCCcccCCCCCEEEEEe-CCCeEEEE--eCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----c
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVI--NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----S 150 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 150 (250)
.....++|+| +++.|+.++ .+|.+.|| |+.++..... .. ....+....|+|||+.++.....+. +
T Consensus 248 g~~~~~~wSP------DG~~La~~~~~~g~~~Iy~~d~~~~~~~~l-t~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 248 GHNGAPAFSP------DGSRLAFASSKDGVLNIYVMGANGGTPSQL-TS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVY 319 (429)
T ss_pred CccCceeECC------CCCEEEEEEecCCcEEEEEEECCCCCeEee-cc-CCCCcCCEEECCCCCEEEEEECCCCCceEE
Confidence 2334678998 999887764 67766555 6665554332 22 2346778999999998774322111 1
Q ss_pred cCee-eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649 151 GGKR-LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 229 (250)
Q Consensus 151 ~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 229 (250)
.... ......+ .+.. ....|+ |+|++|+..+.++ +.+||+.++... .....+ ......|+|
T Consensus 320 ~~~~~~~~~~~l-~~~~--~~~~~S---pDG~~ia~~~~~~-i~~~Dl~~g~~~---------~lt~~~--~~~~~~~sP 381 (429)
T PRK01742 320 RMSASGGGASLV-GGRG--YSAQIS---ADGKTLVMINGDN-VVKQDLTSGSTE---------VLSSTF--LDESPSISP 381 (429)
T ss_pred EEECCCCCeEEe-cCCC--CCccCC---CCCCEEEEEcCCC-EEEEECCCCCeE---------EecCCC--CCCCceECC
Confidence 1100 0001111 2322 456788 8999998887765 556999887321 111111 224567887
Q ss_pred CCCCeEEEeeCCceEEEEeC
Q 025649 230 TESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 230 ~~~~~l~s~~~d~~i~vw~~ 249 (250)
||++|+.++.++.+.+|++
T Consensus 382 -dG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 382 -NGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred -CCCEEEEEEcCCCceEEEE
Confidence 8999999988888887764
No 181
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=1.3e-17 Score=128.43 Aligned_cols=166 Identities=11% Similarity=0.182 Sum_probs=123.2
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 99 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 99 (250)
....|+.+.|.|-....|+.+++||.|++|.+..+....... .....+..|.+.|+++.|+| .....|+
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~------tPe~~lt~h~eKI~slRfHP-----LAadvLa 694 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM------TPEKILTIHGEKITSLRFHP-----LAADVLA 694 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC------CcceeeecccceEEEEEecc-----hhhhHhh
Confidence 456799999999776589999999999999997654322221 22234455789999999999 4678999
Q ss_pred EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649 100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 179 (250)
Q Consensus 100 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 179 (250)
+++.|-+|++||+++.. ....+.+|.+.|..++|| |+
T Consensus 695 ~asyd~Ti~lWDl~~~~----------------------------------------~~~~l~gHtdqIf~~AWS---pd 731 (1012)
T KOG1445|consen 695 VASYDSTIELWDLANAK----------------------------------------LYSRLVGHTDQIFGIAWS---PD 731 (1012)
T ss_pred hhhccceeeeeehhhhh----------------------------------------hhheeccCcCceeEEEEC---CC
Confidence 99999999999999754 234678999999999999 99
Q ss_pred CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-CCceeEEEecCCCCCeEEEeeCC----ceEEEEe
Q 025649 180 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTS----KVVKVYS 248 (250)
Q Consensus 180 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d----~~i~vw~ 248 (250)
|+.+++.+.||+|++|+.+++... +..-.+. ...-..+.|.- ||+++++.+.| +.|.+||
T Consensus 732 Gr~~AtVcKDg~~rVy~Prs~e~p--------v~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 732 GRRIATVCKDGTLRVYEPRSREQP--------VYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYD 796 (1012)
T ss_pred CcceeeeecCceEEEeCCCCCCCc--------cccCCCCccCcceeEEEEe-cCcEEEEecccccchhhhhhhh
Confidence 999999999999999999987532 1111111 11222334443 88888777655 3466665
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.2e-15 Score=123.79 Aligned_cols=225 Identities=13% Similarity=0.125 Sum_probs=149.5
Q ss_pred CcEEEEcccceeeeeeccC--CCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEcc-CC-C---CccceecCCCCCCCCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAG--HSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFS-KG-R---PNKIVNFGLPENNGNAG 72 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~--h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~-~~-~---~~~~~~~~~~~~~~~~~ 72 (250)
+|++||.+.++.+..|.++ ....|+.+.+-. +...++++|+.||.||||+-- ++ + .+..+. +..+....
T Consensus 1087 ~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~-~Ls~~~~~-- 1163 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWS-SLSDQLPG-- 1163 (1387)
T ss_pred eEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeec-cccccCcc--
Confidence 4899999999999888722 235788998754 333489999999999999743 22 1 111111 10000000
Q ss_pred cccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeeccc-ceeEEEeeeeeecc
Q 025649 73 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV-NIRDAEMEILDQSG 151 (250)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 151 (250)
..+.-.-+.|.. ...+|++++.-..|+|||+...+....+.......++.+.-+.. |+.++ +|..|+..
T Consensus 1164 ---~r~~~~v~dWqQ------~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~-AGfaDGsv 1233 (1387)
T KOG1517|consen 1164 ---ARGTGLVVDWQQ------QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA-AGFADGSV 1233 (1387)
T ss_pred ---CCCCCeeeehhh------hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE-EeecCCce
Confidence 011112345554 44555555568999999999988888877776677777766544 56666 66655553
Q ss_pred -------CeeeeeeccccCcccc--EEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeecc---
Q 025649 152 -------GKRLHLDYSVGGHTAA--ASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL--- 218 (250)
Q Consensus 152 -------~~~~~~~~~~~~h~~~--v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--- 218 (250)
......+...+.|... |..+.+. +.|- .|++|+.||.|++||++..... ..+ ....|
T Consensus 1234 RvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq---~~G~~elvSgs~~G~I~~~DlR~~~~e------~~~-~iv~~~~y 1303 (1387)
T KOG1517|consen 1234 RVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ---RQGLGELVSGSQDGDIQLLDLRMSSKE------TFL-TIVAHWEY 1303 (1387)
T ss_pred EEeecccCCccccceeecccCCcccceeEEee---cCCCcceeeeccCCeEEEEecccCccc------ccc-eeeecccc
Confidence 2333355667778776 9999998 6554 5999999999999999984211 111 22222
Q ss_pred CCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 219 NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
++..+++..++ +...+|+|+. +.|+||++.
T Consensus 1304 Gs~lTal~VH~-hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1304 GSALTALTVHE-HAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred Cccceeeeecc-CCCeeeecCc-ceEEEEecC
Confidence 33588999987 7778999987 999999863
No 183
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=3.9e-18 Score=134.64 Aligned_cols=207 Identities=18% Similarity=0.182 Sum_probs=148.3
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|+||..++..++...+ ||.+.|+.++.+.+.. +++++|.|..|++|.+.++.++..+. + |.+.|+
T Consensus 214 vKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~-~iaaaS~D~vIrvWrl~~~~pvsvLr-g------------htgavt 278 (1113)
T KOG0644|consen 214 VKIWSMETARCLASCR-GHSGDITDLAVSSNNT-MIAAASNDKVIRVWRLPDGAPVSVLR-G------------HTGAVT 278 (1113)
T ss_pred eeeeeccchhhhccCC-CCccccchhccchhhh-hhhhcccCceEEEEecCCCchHHHHh-c------------ccccee
Confidence 7899999999999999 9999999999999888 89999999999999999999998887 4 689999
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec----cCCCCCCccceeecccceeEEEeeeeeeccCeeeee
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS----KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL 157 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (250)
+++|+| - .+.+.||++++||.+-. ..... ....+..+.++.|...+..++ .+..+..... ..
T Consensus 279 aiafsP------~----~sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-Tgs~d~ea~n--~e 344 (1113)
T KOG0644|consen 279 AIAFSP------R----ASSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFENNGDRFL-TGSRDGEARN--HE 344 (1113)
T ss_pred eeccCc------c----ccCCCCCceEecccccc-ccccCCCCCCcccccceeeeeccccccccc-cccCCccccc--ch
Confidence 999999 2 27789999999999821 11111 111122333344444443333 2222221111 01
Q ss_pred eccccCccccEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 158 DYSVGGHTAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
...+..+...+.-+.++ .+ ..+.+++-.+-.+++|++.++ .+.....+|...++.+.++|-+.....
T Consensus 345 ~~~l~~~~~~lif~t~s---sd~~~~~~~ar~~~~~~vwnl~~g---------~l~H~l~ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 345 FEQLAWRSNLLIFVTRS---SDLSSIVVTARNDHRLCVWNLYTG---------QLLHNLMGHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred hhHhhhhccceEEEecc---ccccccceeeeeeeEeeeeecccc---------hhhhhhcccccceeeeeecCCCcHhhh
Confidence 11222333333222322 22 245666667888999999998 666778899999999999998888888
Q ss_pred EeeCCceEEEEeC
Q 025649 237 VCDTSKVVKVYSI 249 (250)
Q Consensus 237 s~~~d~~i~vw~~ 249 (250)
+++.||...|||+
T Consensus 413 sag~dgst~iwdi 425 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDI 425 (1113)
T ss_pred hccCCCceEeeec
Confidence 9999999999996
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.6e-16 Score=116.00 Aligned_cols=169 Identities=17% Similarity=0.167 Sum_probs=133.6
Q ss_pred eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC------CCCccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649 15 SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK------GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA 88 (250)
Q Consensus 15 ~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 88 (250)
.+. +|.+.|++|.|+.+++ .|++|+.|..+++|++.. .+++....-+ |...|.+++|..
T Consensus 51 D~~-~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~------------H~SNIF~L~F~~- 115 (609)
T KOG4227|consen 51 DVR-EHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHP------------HRSNIFSLEFDL- 115 (609)
T ss_pred hhh-hhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCc------------cccceEEEEEcc-
Confidence 455 8999999999999998 899999999999999863 3444444333 678999999997
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccE
Q 025649 89 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA 168 (250)
Q Consensus 89 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 168 (250)
.++.+.+|..+++|.+.|+++.+.+..... ....+.|
T Consensus 116 -----~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~--------------------------------------~~~~~~V 152 (609)
T KOG4227|consen 116 -----ENRFLYSGERWGTVIKHDIETKQSIYVANE--------------------------------------NNNRGDV 152 (609)
T ss_pred -----CCeeEecCCCcceeEeeecccceeeeeecc--------------------------------------cCcccce
Confidence 888999999999999999998664432211 2234589
Q ss_pred EEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 169 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 169 ~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
+.+..+ |..+.|++.+.++.|.+||.+..... -.+...........++.|+|....+|++.+..+-+.+||
T Consensus 153 Y~m~~~---P~DN~~~~~t~~~~V~~~D~Rd~~~~------~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D 223 (609)
T KOG4227|consen 153 YHMDQH---PTDNTLIVVTRAKLVSFIDNRDRQNP------ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFD 223 (609)
T ss_pred eecccC---CCCceEEEEecCceEEEEeccCCCCC------CceeeecCCCccceeeeecCCCceeEEeccccCCCCcee
Confidence 999999 66789999999999999999986432 112233445566788899998899999999999999999
Q ss_pred CC
Q 025649 249 IS 250 (250)
Q Consensus 249 ~~ 250 (250)
++
T Consensus 224 ~R 225 (609)
T KOG4227|consen 224 RR 225 (609)
T ss_pred ec
Confidence 74
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=2.9e-16 Score=121.85 Aligned_cols=191 Identities=16% Similarity=0.193 Sum_probs=142.3
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 102 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 102 (250)
.|..++|-|||..+++.++ ..+.+||.+.|..+.+++ + |.+.|++++++. +|+.+++|+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLK-g------------HKDtVycVAys~------dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLK-G------------HKDTVYCVAYAK------DGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccccc-c------------ccceEEEEEEcc------CCceeccCC
Confidence 7999999999984444443 479999999999999998 4 689999999998 999999999
Q ss_pred CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec--cCeeeeeeccccCccccEEEEEeecCCCCC
Q 025649 103 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS--GGKRLHLDYSVGGHTAAASCVAFSMFGERG 180 (250)
Q Consensus 103 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 180 (250)
.|+.|.+|...- ....+-.+...+.|+.|+|-...+++....+.. ..... .+.+.+ ....+.+++|. .+|
T Consensus 73 aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK-~V~K~k-ss~R~~~CsWt---nDG 144 (1081)
T KOG1538|consen 73 ADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK-SVSKHK-SSSRIICCSWT---NDG 144 (1081)
T ss_pred CceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh-hHHhhh-hheeEEEeeec---CCC
Confidence 999999998653 333444556889999999999998854333322 22111 111111 23567888888 899
Q ss_pred cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC----CeEEEeeCCceEEEEeC
Q 025649 181 KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES----ENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 181 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~s~~~d~~i~vw~~ 249 (250)
++++.|-.+|+|.+=+-..... -.+..-.+.+++|++++|+|..+ ..+++.....++.+|.+
T Consensus 145 qylalG~~nGTIsiRNk~gEek-------~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L 210 (1081)
T KOG1538|consen 145 QYLALGMFNGTISIRNKNGEEK-------VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL 210 (1081)
T ss_pred cEEEEeccCceEEeecCCCCcc-------eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe
Confidence 9999999999999986544321 22333346778999999998543 36888888888888875
No 186
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.72 E-value=4.7e-16 Score=117.48 Aligned_cols=150 Identities=16% Similarity=0.242 Sum_probs=113.8
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC--C---ccceec----------CCCCCCCCCCcccCCCceeEEec
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR--P---NKIVNF----------GLPENNGNAGQCYNPAFVHAIAI 85 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~--~---~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~ 85 (250)
...|+|+.|-|.++.+++.+-.+|.+.++|..-.. . -..++. ......+.....+....|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 46899999999887788888999999999864211 0 000000 00011122333444557888889
Q ss_pred CCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCcc
Q 025649 86 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT 165 (250)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 165 (250)
+| ||++||+.++||.+||||..+.+. +..++..-
T Consensus 299 S~------DG~~LA~VSqDGfLRvF~fdt~eL----------------------------------------lg~mkSYF 332 (636)
T KOG2394|consen 299 SP------DGKYLATVSQDGFLRIFDFDTQEL----------------------------------------LGVMKSYF 332 (636)
T ss_pred cC------CCceEEEEecCceEEEeeccHHHH----------------------------------------HHHHHhhc
Confidence 98 999999999999999999986442 22344455
Q ss_pred ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649 166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 228 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 228 (250)
+...|+.|| |||+||++|++|..|.||.+... +++..-.+|.+.|..++|.
T Consensus 333 GGLLCvcWS---PDGKyIvtGGEDDLVtVwSf~er---------RVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 333 GGLLCVCWS---PDGKYIVTGGEDDLVTVWSFEER---------RVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred cceEEEEEc---CCccEEEecCCcceEEEEEeccc---------eEEEeccccccceeeEeec
Confidence 678999999 99999999999999999999997 7778889999999999987
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=4.7e-14 Score=107.41 Aligned_cols=219 Identities=10% Similarity=0.010 Sum_probs=131.1
Q ss_pred cEEEEcc-ccee--eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCC
Q 025649 2 WQIIDIR-QHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 2 i~iwd~~-~~~~--~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|.+|++. ++++ +.... ..+....++|+|+++.++++...++.|.+|++++. ......... ...
T Consensus 59 i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-----------~~~ 125 (330)
T PRK11028 59 VLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-----------EGL 125 (330)
T ss_pred EEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-----------cCC
Confidence 5678876 3432 22232 23356789999999944444445899999999643 221111100 012
Q ss_pred CceeEEecCCCcccCCCCCEEEEE-eCCCeEEEEeCCCceeEe-----eccCCCCCCccceeecccceeEEEeee-----
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNIS-----RSKSTTKPLKGSQSTSKVNIRDAEMEI----- 146 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 146 (250)
...++++++| ++++++++ ..++.|.+||+.+...+. ............+.|+|+|++++....
T Consensus 126 ~~~~~~~~~p------~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v 199 (330)
T PRK11028 126 EGCHSANIDP------DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSV 199 (330)
T ss_pred CcccEeEeCC------CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEE
Confidence 3467788898 88888554 567999999998632221 112222355678999999999875322
Q ss_pred --eeecc-CeeeeeeccccC------ccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecCCCcceecccccceeeeee
Q 025649 147 --LDQSG-GKRLHLDYSVGG------HTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNI 216 (250)
Q Consensus 147 --~~~~~-~~~~~~~~~~~~------h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 216 (250)
++... ....+.+..+.. +......+.++ |++++++++.. ++.|.+|++....... .......
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~---pdg~~lyv~~~~~~~I~v~~i~~~~~~~-----~~~~~~~ 271 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT---PDGRHLYACDRTASLISVFSVSEDGSVL-----SFEGHQP 271 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC---CCCCEEEEecCCCCeEEEEEEeCCCCeE-----EEeEEEe
Confidence 23221 111222222221 11233468899 89999988864 7899999996542110 1111111
Q ss_pred ccCCceeEEEecCCCCCeEEEeeC-CceEEEEeC
Q 025649 217 NLNKKVNWLCTTPTESENLVVCDT-SKVVKVYSI 249 (250)
Q Consensus 217 ~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~vw~~ 249 (250)
-......+.++| +|++|++++. +++|.+|++
T Consensus 272 -~~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 272 -TETQPRGFNIDH-SGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred -ccccCCceEECC-CCCEEEEEEccCCcEEEEEE
Confidence 123456788987 8888887664 899999975
No 188
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.70 E-value=2.4e-14 Score=112.26 Aligned_cols=216 Identities=19% Similarity=0.273 Sum_probs=156.9
Q ss_pred CcEEEEcccce-eeeeeccCCC-CCeeeEEE-cCCCCeEEEEecC-CCeEEEEEccC-CCCccceecCCCCCCCCCCccc
Q 025649 1 MWQIIDIRQHC-LYKSLRAGHS-SICSSVQF-IPWKPWEVISGGL-DSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 1 ti~iwd~~~~~-~~~~l~~~h~-~~v~~l~~-~~~~~~~l~s~s~-dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
.+.+|+...+. ....+. ++. ..+..+.+ ++++..+++..+. |+.+.+||... ......+. .
T Consensus 88 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~------------ 153 (466)
T COG2319 88 TIKLWDLDNGEKLIKSLE-GLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE-G------------ 153 (466)
T ss_pred cEEEEEcCCCceeEEEEe-ccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe-c------------
Confidence 36889988776 667777 544 37888888 7777634444444 99999999987 45555444 2
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeC-CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS---- 150 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 150 (250)
|...+..+.++| ++..+++++. |+.+++|+...+........ +...+.+++++|++..++..+..+..
T Consensus 154 ~~~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w 226 (466)
T COG2319 154 HSESVTSLAFSP------DGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226 (466)
T ss_pred CcccEEEEEECC------CCCEEEecCCCCCceEEEEcCCCceEEeecc-CCCceEEEEEcCCcceEEEEecCCCcEEEE
Confidence 578889999999 8888888885 99999999998666555554 45889999999999833322122221
Q ss_pred cCeeeeeec-cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649 151 GGKRLHLDY-SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 229 (250)
Q Consensus 151 ~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 229 (250)
+......+. .+.+|.... -..|+ +++.++++++.|+.+++||.+.... .+.....|...+.++.+.|
T Consensus 227 d~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 227 DLSTGKLLRSTLSGHSDSV-VSSFS---PDGSLLASGSSDGTIRLWDLRSSSS--------LLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred ECCCCcEEeeecCCCCcce-eEeEC---CCCCEEEEecCCCcEEEeeecCCCc--------EEEEEecCCccEEEEEECC
Confidence 212233344 577787764 33788 7878899999999999999998642 1222267888999999998
Q ss_pred CCCCeEEEeeCCceEEEEeCC
Q 025649 230 TESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 230 ~~~~~l~s~~~d~~i~vw~~~ 250 (250)
++..+++++.|+.+++|+++
T Consensus 295 -~~~~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 295 -DGKLLASGSSDGTVRLWDLE 314 (466)
T ss_pred -CCCEEEEeeCCCcEEEEEcC
Confidence 77778888888889999863
No 189
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=1.3e-14 Score=103.07 Aligned_cols=175 Identities=13% Similarity=0.194 Sum_probs=128.5
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc-CCCCccceecCCCCCCCCCCcccCCCce
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
|.|||-...+++.++. ...+|.++.+.++ .|+..- ++.|.+|... +.+.++.+.... .|...
T Consensus 77 viIWDD~k~~~i~el~--f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~-----------NPkGl 139 (346)
T KOG2111|consen 77 VIIWDDLKERCIIELS--FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRS-----------NPKGL 139 (346)
T ss_pred EEEEecccCcEEEEEE--eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeeccc-----------CCCce
Confidence 6799977888888887 8889999999987 455544 5689999987 456666665331 24444
Q ss_pred eEEecCCCcccCCCCCEEEE-EeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeec
Q 025649 81 HAIAIPDADMLDKTNKICVV-AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY 159 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (250)
.++.-.. +..+||. |-.-|.|++-|+...+.- ...
T Consensus 140 C~~~~~~------~k~~LafPg~k~GqvQi~dL~~~~~~--------------------------------------~p~ 175 (346)
T KOG2111|consen 140 CSLCPTS------NKSLLAFPGFKTGQVQIVDLASTKPN--------------------------------------APS 175 (346)
T ss_pred EeecCCC------CceEEEcCCCccceEEEEEhhhcCcC--------------------------------------Cce
Confidence 4443332 3334433 345688999888753310 113
Q ss_pred cccCccccEEEEEeecCCCCCcEEEEeeCCCe-EEEEecCCCcceecccccceeeeee--ccCCceeEEEecCCCCCeEE
Q 025649 160 SVGGHTAAASCVAFSMFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 160 ~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~ 236 (250)
.+.+|...|.|++.+ -+|..+||+|..|+ |||||..++... ..+. .....|++|+|+| +..+|+
T Consensus 176 ~I~AH~s~Iacv~Ln---~~Gt~vATaStkGTLIRIFdt~~g~~l---------~E~RRG~d~A~iy~iaFSp-~~s~La 242 (346)
T KOG2111|consen 176 IINAHDSDIACVALN---LQGTLVATASTKGTLIRIFDTEDGTLL---------QELRRGVDRADIYCIAFSP-NSSWLA 242 (346)
T ss_pred EEEcccCceeEEEEc---CCccEEEEeccCcEEEEEEEcCCCcEe---------eeeecCCchheEEEEEeCC-CccEEE
Confidence 567899999999999 89999999999885 899999999543 3332 2335699999998 899999
Q ss_pred EeeCCceEEEEeCC
Q 025649 237 VCDTSKVVKVYSIS 250 (250)
Q Consensus 237 s~~~d~~i~vw~~~ 250 (250)
++|.-|++.|+.++
T Consensus 243 vsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 243 VSSDKGTLHIFSLR 256 (346)
T ss_pred EEcCCCeEEEEEee
Confidence 99999999999863
No 190
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.70 E-value=8.4e-15 Score=102.05 Aligned_cols=149 Identities=13% Similarity=0.271 Sum_probs=103.0
Q ss_pred eeEEEcCCCCeEEEEecC---------CCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649 25 SSVQFIPWKPWEVISGGL---------DSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 94 (250)
Q Consensus 25 ~~l~~~~~~~~~l~s~s~---------dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (250)
-.+.|+|+|+.+++.... -|...+|.++. +.....+... ....|.+++|+| +
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~------------~~~~I~~~~WsP------~ 70 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK------------KEGPIHDVAWSP------N 70 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc------------CCCceEEEEECc------C
Confidence 368899999855555441 24466666632 3344444433 234699999999 8
Q ss_pred CCEEEEE--eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEE
Q 025649 95 NKICVVA--KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA 172 (250)
Q Consensus 95 ~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 172 (250)
++.+++. ..++.|.+||++. + .+..+. ...+..+.
T Consensus 71 g~~favi~g~~~~~v~lyd~~~-~----------------------------------------~i~~~~--~~~~n~i~ 107 (194)
T PF08662_consen 71 GNEFAVIYGSMPAKVTLYDVKG-K----------------------------------------KIFSFG--TQPRNTIS 107 (194)
T ss_pred CCEEEEEEccCCcccEEEcCcc-c----------------------------------------EeEeec--CCCceEEE
Confidence 8887655 3567999999962 1 122332 34567899
Q ss_pred eecCCCCCcEEEEeeC---CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC------Cce
Q 025649 173 FSMFGERGKYLISGGN---DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT------SKV 243 (250)
Q Consensus 173 ~~p~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------d~~ 243 (250)
|+ |+|++|++++. .|.|.+||.++. +.+.. ..|. .+..++|+| ||++|+++.. |+.
T Consensus 108 ws---P~G~~l~~~g~~n~~G~l~~wd~~~~---------~~i~~-~~~~-~~t~~~WsP-dGr~~~ta~t~~r~~~dng 172 (194)
T PF08662_consen 108 WS---PDGRFLVLAGFGNLNGDLEFWDVRKK---------KKIST-FEHS-DATDVEWSP-DGRYLATATTSPRLRVDNG 172 (194)
T ss_pred EC---CCCCEEEEEEccCCCcEEEEEECCCC---------EEeec-cccC-cEEEEEEcC-CCCEEEEEEeccceecccc
Confidence 99 89999999864 467999999976 33322 2333 467899998 9999998764 788
Q ss_pred EEEEeC
Q 025649 244 VKVYSI 249 (250)
Q Consensus 244 i~vw~~ 249 (250)
++||++
T Consensus 173 ~~Iw~~ 178 (194)
T PF08662_consen 173 FKIWSF 178 (194)
T ss_pred EEEEEe
Confidence 999986
No 191
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=3.5e-15 Score=108.57 Aligned_cols=187 Identities=13% Similarity=0.151 Sum_probs=138.4
Q ss_pred cEEEEcccce----eeeeeccCCCCCeeeEEEcCCCCeEEEEecCC--CeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649 2 WQIIDIRQHC----LYKSLRAGHSSICSSVQFIPWKPWEVISGGLD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 2 i~iwd~~~~~----~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
+++|..+.+. .+..+. -...+..+.-++..+.++++|+.. ..+++||++..+.+..-+.- .....-..
T Consensus 127 l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv----pnD~L~Lr 200 (412)
T KOG3881|consen 127 LQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV----PNDRLGLR 200 (412)
T ss_pred EEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC----CCccccce
Confidence 5667766332 233444 225667777778777677779999 89999999887544443311 11122233
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 155 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (250)
-|-+++++.|-| +.....|+++..-+.+++||.+.++.
T Consensus 201 VPvW~tdi~Fl~----g~~~~~fat~T~~hqvR~YDt~~qRR-------------------------------------- 238 (412)
T KOG3881|consen 201 VPVWITDIRFLE----GSPNYKFATITRYHQVRLYDTRHQRR-------------------------------------- 238 (412)
T ss_pred eeeeeccceecC----CCCCceEEEEecceeEEEecCcccCc--------------------------------------
Confidence 456778888887 11278999999999999999996542
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee-eeccCCceeEEEecCCCCCe
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~ 234 (250)
++..+.--..+++++... |.++++++|..-|.+..||++.+ .++.. +.+..+.|.++..+| .+++
T Consensus 239 -PV~~fd~~E~~is~~~l~---p~gn~Iy~gn~~g~l~~FD~r~~---------kl~g~~~kg~tGsirsih~hp-~~~~ 304 (412)
T KOG3881|consen 239 -PVAQFDFLENPISSTGLT---PSGNFIYTGNTKGQLAKFDLRGG---------KLLGCGLKGITGSIRSIHCHP-THPV 304 (412)
T ss_pred -ceeEeccccCcceeeeec---CCCcEEEEecccchhheecccCc---------eeeccccCCccCCcceEEEcC-CCce
Confidence 223444446789999998 89999999999999999999998 44444 788899999999998 7789
Q ss_pred EEEeeCCceEEEEeCC
Q 025649 235 LVVCDTSKVVKVYSIS 250 (250)
Q Consensus 235 l~s~~~d~~i~vw~~~ 250 (250)
++++|-|+.++|+|+.
T Consensus 305 las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 305 LASCGLDRYVRIHDIK 320 (412)
T ss_pred EEeeccceeEEEeecc
Confidence 9999999999999973
No 192
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=6.8e-15 Score=116.94 Aligned_cols=226 Identities=15% Similarity=0.127 Sum_probs=154.9
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCC--eEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCC-------
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP--WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNA------- 71 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~------- 71 (250)
+|+||...|++++..+. +|..+++.+.+.|... .++.+++.||.|++||...+..++++..+.+......
T Consensus 38 ~V~VyS~~Tg~~i~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~ 116 (792)
T KOG1963|consen 38 FVKVYSTATGECITSLE-DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADI 116 (792)
T ss_pred EEEEEecchHhhhhhcc-cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCc
Confidence 47899999999999999 9999999999998775 4788999999999999999888877764421100000
Q ss_pred -CcccCCCc-------------------------------------eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCC
Q 025649 72 -GQCYNPAF-------------------------------------VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 113 (250)
Q Consensus 72 -~~~~~~~~-------------------------------------v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~ 113 (250)
...++... -..+..++ .+. +.....+..+.+|...
T Consensus 117 s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~------~ge-~~~i~~~~~~~~~~v~ 189 (792)
T KOG1963|consen 117 SANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN------SGE-FKGIVHMCKIHIYFVP 189 (792)
T ss_pred cceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC------Cce-EEEEEEeeeEEEEEec
Confidence 00000000 01111111 222 2233345567788877
Q ss_pred CceeE---eeccCCCCCCccceeecccceeEEEeeeeeeccC--------eeeeeeccccCccccEEEEEeecCCCCCcE
Q 025649 114 SELNI---SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG--------KRLHLDYSVGGHTAAASCVAFSMFGERGKY 182 (250)
Q Consensus 114 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 182 (250)
.+... ......+...+.+.+++|++++++ ++..++... ........+.-|...|.+++|+ ++|.+
T Consensus 190 ~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~A-a~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS---~~G~~ 265 (792)
T KOG1963|consen 190 KHTKHTSSRDITVHHTFNITCVALSPNERYLA-AGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS---SDGAY 265 (792)
T ss_pred ccceeeccchhhhhhcccceeEEeccccceEE-EeccCCcEEEEeccccccccccceEEEecccccceeEEe---cCCce
Confidence 64411 112223334578899999999999 444444321 1122234566788999999999 99999
Q ss_pred EEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 183 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 183 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
|++|+.+|.+.+|.+.+++. ..+.-..++|..+.++| |+.+.+....|+.|.+-.+
T Consensus 266 LlSGG~E~VLv~Wq~~T~~k----------qfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 266 LLSGGREGVLVLWQLETGKK----------QFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred EeecccceEEEEEeecCCCc----------ccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEec
Confidence 99999999999999999742 23344567899999997 8888888888999988654
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=7e-14 Score=106.48 Aligned_cols=219 Identities=13% Similarity=0.135 Sum_probs=132.3
Q ss_pred CcEEEEccc-ce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccC
Q 025649 1 MWQIIDIRQ-HC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 1 ti~iwd~~~-~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
+|++||+.+ ++ .+..+. +.+....++++|+++.+++++..++.|.+|++.. ++. ...... ..
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~-----------~~ 78 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAES-----------PL 78 (330)
T ss_pred CEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeee-----------cC
Confidence 488999964 33 455565 4466789999999993334455688999999963 332 111100 01
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCC-ceeEeecc-CCCCCCccceeecccceeEEEee-------e
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES-ELNISRSK-STTKPLKGSQSTSKVNIRDAEME-------I 146 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~ 146 (250)
......++++| +++++++++ .++.|.+|++.+ +....... .........++++|+|++++... .
T Consensus 79 ~~~p~~i~~~~------~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v 152 (330)
T PRK11028 79 PGSPTHISTDH------QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRL 152 (330)
T ss_pred CCCceEEEECC------CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence 22356788998 899888776 489999999974 22111111 11123466788999999887422 2
Q ss_pred eeeccCeeeee----eccccCccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecCCCcceecccccceeeeeec----
Q 025649 147 LDQSGGKRLHL----DYSVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNIN---- 217 (250)
Q Consensus 147 ~~~~~~~~~~~----~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---- 217 (250)
++......... ...... ......++|+ |+|++++++.. ++.|.+||+....... +.......
T Consensus 153 ~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~---pdg~~lyv~~~~~~~v~v~~~~~~~~~~-----~~~~~~~~~p~~ 223 (330)
T PRK11028 153 FTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFH---PNQQYAYCVNELNSSVDVWQLKDPHGEI-----ECVQTLDMMPAD 223 (330)
T ss_pred EEECCCCcccccCCCceecCC-CCCCceEEEC---CCCCEEEEEecCCCEEEEEEEeCCCCCE-----EEEEEEecCCCc
Confidence 33221111110 001111 2335688999 89999988876 8999999997421100 11111111
Q ss_pred --cCCceeEEEecCCCCCeEEEee-CCceEEEEeC
Q 025649 218 --LNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI 249 (250)
Q Consensus 218 --~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~ 249 (250)
+......+.++| ++++++++. .++.|.+|++
T Consensus 224 ~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 224 FSDTRWAADIHITP-DGRHLYACDRTASLISVFSV 257 (330)
T ss_pred CCCCccceeEEECC-CCCEEEEecCCCCeEEEEEE
Confidence 112234577887 888888875 4789999986
No 194
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=1.1e-14 Score=114.62 Aligned_cols=232 Identities=13% Similarity=0.052 Sum_probs=152.2
Q ss_pred cEEEEccccee--eee---eccCCCCCeeeEEEcCCCC-eEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCCCcc
Q 025649 2 WQIIDIRQHCL--YKS---LRAGHSSICSSVQFIPWKP-WEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQC 74 (250)
Q Consensus 2 i~iwd~~~~~~--~~~---l~~~h~~~v~~l~~~~~~~-~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 74 (250)
|-+||+..+.. ... ....|..++..+.|..+-. .-|++++.||.|..|+++.-.. ........... .....
T Consensus 267 V~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~--~~~~~ 344 (555)
T KOG1587|consen 267 VVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH--KGQQS 344 (555)
T ss_pred EEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc--ccccc
Confidence 67999986654 222 2236899999999976443 2489999999999998875433 22221110000 00011
Q ss_pred cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC---ce----eEeeccCCCCCCccceeecccceeEEE-eee
Q 025649 75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES---EL----NISRSKSTTKPLKGSQSTSKVNIRDAE-MEI 146 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 146 (250)
.....++++.|.+ .+...+++|+.+|.|.--+-.. .. ........+...+..+.++|-+..++. ++.
T Consensus 345 ~~~~~~t~~~F~~-----~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gD 419 (555)
T KOG1587|consen 345 SKAVGATSLKFEP-----TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGD 419 (555)
T ss_pred ccccceeeEeecc-----CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeecc
Confidence 1234678899988 5788999999999988733332 22 111122334578899999998766553 444
Q ss_pred eeecc--Ce-eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649 147 LDQSG--GK-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 223 (250)
Q Consensus 147 ~~~~~--~~-~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (250)
|.... .. ...++..+..+...+++++|||.. -..|+++..||.|.+||+..... .+.....-+....+
T Consensus 420 W~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr--pavF~~~d~~G~l~iWDLl~~~~-------~Pv~s~~~~~~~l~ 490 (555)
T KOG1587|consen 420 WTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR--PAVFATVDGDGNLDIWDLLQDDE-------EPVLSQKVCSPALT 490 (555)
T ss_pred ceeEeccccCCCCcchhhhhccceeeeeEEcCcC--ceEEEEEcCCCceehhhhhcccc-------CCcccccccccccc
Confidence 43332 22 445666777788889999999633 35888999999999999987543 23333333344455
Q ss_pred EEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 224 WLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 224 ~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.+.|++ .|+.|+.|+..|.+.+|+++
T Consensus 491 ~~~~s~-~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 491 RVRWSP-NGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred eeecCC-CCcEEEEecCCCcEEEEEcC
Confidence 555654 79999999999999999973
No 195
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=4.5e-16 Score=115.60 Aligned_cols=168 Identities=17% Similarity=0.255 Sum_probs=132.2
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
+.|||- .|..+.+++ ....|..+.|.|..= +|++++..|.++.-|+.+|+.+..+..+ ...+.
T Consensus 193 ~yvYD~-~GtElHClk--~~~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~GklVa~~~t~-------------~G~~~ 255 (545)
T KOG1272|consen 193 VYVYDN-NGTELHCLK--RHIRVARLEFLPYHF-LLVAASEAGFLKYQDVSTGKLVASIRTG-------------AGRTD 255 (545)
T ss_pred EEEecC-CCcEEeehh--hcCchhhhcccchhh-eeeecccCCceEEEeechhhhhHHHHcc-------------CCccc
Confidence 467773 566677887 445789999999886 8999999999999999999999999866 46778
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccc
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 161 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (250)
.|..+| -+..+-+|..+|+|.+|...... ++..+
T Consensus 256 vm~qNP------~NaVih~GhsnGtVSlWSP~ske----------------------------------------PLvKi 289 (545)
T KOG1272|consen 256 VMKQNP------YNAVIHLGHSNGTVSLWSPNSKE----------------------------------------PLVKI 289 (545)
T ss_pred hhhcCC------ccceEEEcCCCceEEecCCCCcc----------------------------------------hHHHH
Confidence 888888 88899999999999999987533 44567
Q ss_pred cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC
Q 025649 162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 241 (250)
Q Consensus 162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 241 (250)
..|.++|.++++. ++|+|++|.+.|+.++|||++....+ ..... .-+...++++. .| +++.+..
T Consensus 290 LcH~g~V~siAv~---~~G~YMaTtG~Dr~~kIWDlR~~~ql---------~t~~t-p~~a~~ls~Sq-kg--lLA~~~G 353 (545)
T KOG1272|consen 290 LCHRGPVSSIAVD---RGGRYMATTGLDRKVKIWDLRNFYQL---------HTYRT-PHPASNLSLSQ-KG--LLALSYG 353 (545)
T ss_pred HhcCCCcceEEEC---CCCcEEeecccccceeEeeecccccc---------ceeec-CCCcccccccc-cc--ceeeecC
Confidence 7899999999999 89999999999999999999997432 12221 22445566653 33 4555556
Q ss_pred ceEEEEe
Q 025649 242 KVVKVYS 248 (250)
Q Consensus 242 ~~i~vw~ 248 (250)
..|.+|.
T Consensus 354 ~~v~iw~ 360 (545)
T KOG1272|consen 354 DHVQIWK 360 (545)
T ss_pred Ceeeeeh
Confidence 6788884
No 196
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.5e-16 Score=118.72 Aligned_cols=224 Identities=19% Similarity=0.195 Sum_probs=142.9
Q ss_pred eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCC------------------------
Q 025649 11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE------------------------ 66 (250)
Q Consensus 11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~------------------------ 66 (250)
.+..+|. .|.+.|..+.|+..|. .|++||.|..|.+||...++.+..+..+...
T Consensus 133 ~l~~kL~-~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 133 RLQKKLN-KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhhhccc-CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 3456777 9999999999999999 8999999999999999876655444322100
Q ss_pred -----------CCCCCCcccCCCceeEEecCCC--------------------------------------------ccc
Q 025649 67 -----------NNGNAGQCYNPAFVHAIAIPDA--------------------------------------------DML 91 (250)
Q Consensus 67 -----------~~~~~~~~~~~~~v~~~~~~~~--------------------------------------------~~~ 91 (250)
......+..|...|+-++.-|. ...
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 0001112223444444444441 011
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCceeE-----------eeccCCCCCCccceeecccceeEE-Eeeeeeec-------cC
Q 025649 92 DKTNKICVVAKGDGVVDVINIESELNI-----------SRSKSTTKPLKGSQSTSKVNIRDA-EMEILDQS-------GG 152 (250)
Q Consensus 92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~ 152 (250)
+.+..++++++.|..+++||.+.-... ..+.......|++++|+.++..++ +..-.++. .+
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 123346666666666666666541111 111112335688999996654444 21111111 01
Q ss_pred -------eeeeee-ccccCccc--cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCce
Q 025649 153 -------KRLHLD-YSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 222 (250)
Q Consensus 153 -------~~~~~~-~~~~~h~~--~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (250)
.....+ +.++||.+ .|.++.|- .|..+|+++||.-|.|.||+-.++ +++..+.+-...|
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFf--GPrsEyVvSGSDCGhIFiW~K~t~---------eii~~MegDr~VV 439 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFF--GPRSEYVVSGSDCGHIFIWDKKTG---------EIIRFMEGDRHVV 439 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeec--cCccceEEecCccceEEEEecchh---------HHHHHhhcccceE
Confidence 001222 33788865 46677664 488999999999999999999998 6777777776799
Q ss_pred eEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 223 NWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 223 ~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
++|.-+|..+ +||+++-|.-|+||-
T Consensus 440 NCLEpHP~~P-vLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 440 NCLEPHPHLP-VLASSGIDHDVKIWT 464 (559)
T ss_pred eccCCCCCCc-hhhccCCccceeeec
Confidence 9999888554 799999999999995
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=1.1e-14 Score=119.88 Aligned_cols=216 Identities=13% Similarity=0.105 Sum_probs=136.4
Q ss_pred cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc-cceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649 9 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN-KIVNFGLPENNGNAGQCYNPAFVHAIAIPD 87 (250)
Q Consensus 9 ~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 87 (250)
.|..+..+. .|...|..++.++....+|+|||.||+|++||.+.-..- .+.+ ...........+..+...+
T Consensus 1037 ~G~lVAhL~-Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~r-------S~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1037 RGILVAHLH-EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSAR-------SELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred cceEeehhh-hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceee-------eeEEEeccCCceEEEEecc
Confidence 578888998 999999999998776339999999999999998742211 1111 0001111245678888887
Q ss_pred CcccCCCCCEEEEEeCCCeEEEEeCCCcee-------EeeccCCC-CCCccceeecccc-e-eEEE------eeeeeecc
Q 025649 88 ADMLDKTNKICVVAKGDGVVDVINIESELN-------ISRSKSTT-KPLKGSQSTSKVN-I-RDAE------MEILDQSG 151 (250)
Q Consensus 88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~-~-~~~~------~~~~~~~~ 151 (250)
.++.+|+++.||.|++.++..... ........ +..+..-++.... . .++. +-.||...
T Consensus 1109 ------~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1109 ------NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred ------CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence 899999999999999999876211 11111111 1222333333322 2 2221 22344333
Q ss_pred CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649 152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 231 (250)
Q Consensus 152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 231 (250)
......+ +..-..+.|++++.+ |.+++++.|...|.+.+||++-+. .......++..++..+..+|..
T Consensus 1183 ~~~~w~l-k~~~~hG~vTSi~id---p~~~WlviGts~G~l~lWDLRF~~--------~i~sw~~P~~~~i~~v~~~~~~ 1250 (1431)
T KOG1240|consen 1183 RHDAWRL-KNQLRHGLVTSIVID---PWCNWLVIGTSRGQLVLWDLRFRV--------PILSWEHPARAPIRHVWLCPTY 1250 (1431)
T ss_pred hhhHHhh-hcCccccceeEEEec---CCceEEEEecCCceEEEEEeecCc--------eeecccCcccCCcceEEeeccC
Confidence 2222211 122334779999999 889999999999999999999863 2222233455677777777643
Q ss_pred C--CeEEEee--CCceEEEEeCC
Q 025649 232 S--ENLVVCD--TSKVVKVYSIS 250 (250)
Q Consensus 232 ~--~~l~s~~--~d~~i~vw~~~ 250 (250)
+ ...++++ ..+.|.+|++.
T Consensus 1251 ~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1251 PQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred CCCceEEEecccCCCceeeeecc
Confidence 3 4555544 57889999974
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=3.3e-13 Score=97.81 Aligned_cols=173 Identities=10% Similarity=0.066 Sum_probs=126.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
+++.+++.+..++.+. ....|.++.++.+ .|+.+-.+ .|.|||+++.+.++++..- .-++..+.
T Consensus 70 Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t~----------~~n~~gl~ 133 (391)
T KOG2110|consen 70 LKVVHFKKKTTICEIF--FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIETT----------PPNPKGLC 133 (391)
T ss_pred EEEEEcccCceEEEEe--cCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhcc----------CCCccceE
Confidence 4667777777777776 6678899998876 46666554 4999999999999888732 01345566
Q ss_pred EEecCCCcccCCCCCEEEEEe--CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc-----Cee
Q 025649 82 AIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG-----GKR 154 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 154 (250)
++.+++ .+.+++--+ ..|.|.+||+.+-+....+. .++..+.+++|+++|.++++ ++..++. ...
T Consensus 134 AlS~n~------~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llAT-ASeKGTVIRVf~v~~ 205 (391)
T KOG2110|consen 134 ALSPNN------ANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLAT-ASEKGTVIRVFSVPE 205 (391)
T ss_pred eeccCC------CCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEE-eccCceEEEEEEcCC
Confidence 777766 666776543 46899999999988887777 55699999999999999995 2222221 233
Q ss_pred eeeeccccCc--cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649 155 LHLDYSVGGH--TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 201 (250)
Q Consensus 155 ~~~~~~~~~h--~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~ 201 (250)
.+.+.+|+.. ...|.+++|+ |++++|++.|..++|.+|.+....
T Consensus 206 G~kl~eFRRG~~~~~IySL~Fs---~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 206 GQKLYEFRRGTYPVSIYSLSFS---PDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ccEeeeeeCCceeeEEEEEEEC---CCCCeEEEecCCCeEEEEEecccc
Confidence 4444455432 3468899999 899999999999999999887643
No 199
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=2.3e-16 Score=117.07 Aligned_cols=190 Identities=12% Similarity=0.099 Sum_probs=151.8
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 102 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 102 (250)
.-..+.++.+|. +|+.|+..|.|-.+|..+++....+... ..|..+.|-- +.+++|++
T Consensus 131 GPY~~~ytrnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~v~--------------Etv~Dv~~LH------neq~~AVA- 188 (545)
T KOG1272|consen 131 GPYHLDYTRNGR-HLLLGGRKGHLAAFDWVTKKLHFEINVM--------------ETVRDVTFLH------NEQFFAVA- 188 (545)
T ss_pred CCeeeeecCCcc-EEEecCCccceeeeecccceeeeeeehh--------------hhhhhhhhhc------chHHHHhh-
Confidence 345889999999 8999999999999999999988887743 6788888874 55556555
Q ss_pred CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---eeeeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649 103 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 179 (250)
Q Consensus 103 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 179 (250)
+.+.+.+||-. |..+..+... ..+..+.|-|-.-+|+++ |.....+....+.+..+....+.+..+.-+ |-
T Consensus 189 QK~y~yvYD~~-GtElHClk~~--~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN---P~ 262 (545)
T KOG1272|consen 189 QKKYVYVYDNN-GTELHCLKRH--IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN---PY 262 (545)
T ss_pred hhceEEEecCC-CcEEeehhhc--CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC---Cc
Confidence 67889999976 4444444444 678888999988777752 223333455566677777777888888888 66
Q ss_pred CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 180 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 180 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+-.+-+|...|+|.+|..... +++..+..|.++|.++++.+ +|++++|.+.|..++|||++
T Consensus 263 NaVih~GhsnGtVSlWSP~sk---------ePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 263 NAVIHLGHSNGTVSLWSPNSK---------EPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred cceEEEcCCCceEEecCCCCc---------chHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeec
Confidence 678889999999999999987 77788899999999999997 99999999999999999985
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.7e-15 Score=111.14 Aligned_cols=174 Identities=17% Similarity=0.117 Sum_probs=126.0
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcccee-cCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN-FGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 79 (250)
++|||++.....+.... .|...|.+|.|+|||+ +|++-+.| ..+||+.+++..+.... .+ .+..
T Consensus 167 ~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~a~~t~~~------------k~~~ 231 (398)
T KOG0771|consen 167 TLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAALARKTPFS------------KDEM 231 (398)
T ss_pred eEEEEecCcchhhhhhH-hhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchhhhcCCcc------------cchh
Confidence 48999988888888888 8999999999999999 89999999 99999999996665554 12 2233
Q ss_pred eeEEecCCCcccCCCC-----CEEEEEeCCCeEEEEeCCCcee----EeeccCCCCCCccceeecccceeEEEeeeeeec
Q 025649 80 VHAIAIPDADMLDKTN-----KICVVAKGDGVVDVINIESELN----ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 150 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~-----~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (250)
...+.|+. ++ ..++....-+.|+.||+..... ...........+.+++.+++|++++ .|..++.
T Consensus 232 ~~~cRF~~------d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A-lGT~dGs 304 (398)
T KOG0771|consen 232 FSSCRFSV------DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA-LGTMDGS 304 (398)
T ss_pred hhhceecc------cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE-EeccCCc
Confidence 44556664 33 2223334456677776654222 2222222336899999999999999 6665554
Q ss_pred c----Ceeeeeec-cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC
Q 025649 151 G----GKRLHLDY-SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 199 (250)
Q Consensus 151 ~----~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~ 199 (250)
+ ...++.++ .-+.|...|+.++|+ |+.+++++-+.|..+.+..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~---Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFS---PDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEc---CCcCcccccccCCceeEEEEee
Confidence 3 33444333 335799999999999 8999999999999999987765
No 201
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.6e-15 Score=113.93 Aligned_cols=189 Identities=18% Similarity=0.302 Sum_probs=129.9
Q ss_pred eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
.++. .|.+.|..++|.|..+ .|++|+.||++++|+++....- ......+...+..|..+|.|+++.+
T Consensus 288 ~tl~-s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s-----~~~~~epi~tfraH~gPVl~v~v~~------ 354 (577)
T KOG0642|consen 288 FTLR-SHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKS-----AEKDVEPILTFRAHEGPVLCVVVPS------ 354 (577)
T ss_pred eeee-cchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCc-----cccceeeeEEEecccCceEEEEecC------
Confidence 3666 8999999999999998 8999999999999999431100 0000111223334789999999998
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEe
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 173 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 173 (250)
++.++++|+.||+|+.|++....-..... +. ......+.||.+.|+.+++
T Consensus 355 n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~-------------------------dp-----~vl~~~l~Ghtdavw~l~~ 404 (577)
T KOG0642|consen 355 NGEHCYSGGIDGTIRCWNLPPNQDPDDSY-------------------------DP-----SVLSGTLLGHTDAVWLLAL 404 (577)
T ss_pred CceEEEeeccCceeeeeccCCCCCccccc-------------------------Cc-----chhccceeccccceeeeee
Confidence 99999999999999999987322111110 00 1123467899999999999
Q ss_pred ecCCCCCcEEEEeeCCCeEEEEecCCCcce--ec-----------------------------------ccccceeeeee
Q 025649 174 SMFGERGKYLISGGNDKLVKVWDCSRFQGV--QT-----------------------------------SINNDLLIKNI 216 (250)
Q Consensus 174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~-----------------------------------~~~~~~~~~~~ 216 (250)
+ +....|++++.||++++|+....... .. ......+....
T Consensus 405 s---~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~ 481 (577)
T KOG0642|consen 405 S---STKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS 481 (577)
T ss_pred c---ccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeecccc
Confidence 9 77788999999999999988765441 00 00000000000
Q ss_pred c-----cCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 217 N-----LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 217 ~-----~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
. -...++.+.++| ...+.+++-.|+.|+++|.
T Consensus 482 ~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 482 ASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDN 518 (577)
T ss_pred CCCcccccCccceEEecC-CCCeeEecccCCceecccc
Confidence 0 112356677777 5678899999999999874
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.65 E-value=8.9e-17 Score=127.16 Aligned_cols=121 Identities=24% Similarity=0.361 Sum_probs=106.7
Q ss_pred ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649 10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 89 (250)
Q Consensus 10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (250)
.+.++.|. +|.++|.|..|...|. ++++|+.|..|+||...++.++.... + |...|+.++.+.
T Consensus 180 mk~ikrLl-gH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs~r-G------------hs~ditdlavs~-- 242 (1113)
T KOG0644|consen 180 MKNIKRLL-GHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLASCR-G------------HSGDITDLAVSS-- 242 (1113)
T ss_pred HHHHHHHH-hhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhccCC-C------------Cccccchhccch--
Confidence 34566778 9999999999999999 89999999999999999999988887 4 688899999997
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEE
Q 025649 90 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 169 (250)
Q Consensus 90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 169 (250)
++..+++++.|..|++|.+..+. ++..+.+|.+.|+
T Consensus 243 ----~n~~iaaaS~D~vIrvWrl~~~~----------------------------------------pvsvLrghtgavt 278 (1113)
T KOG0644|consen 243 ----NNTMIAAASNDKVIRVWRLPDGA----------------------------------------PVSVLRGHTGAVT 278 (1113)
T ss_pred ----hhhhhhhcccCceEEEEecCCCc----------------------------------------hHHHHhcccccee
Confidence 88899999999999999998754 4567899999999
Q ss_pred EEEeecCCCCCcEEEEeeCCCeEEEEecC
Q 025649 170 CVAFSMFGERGKYLISGGNDKLVKVWDCS 198 (250)
Q Consensus 170 ~~~~~p~~~~~~~l~s~~~d~~i~iwd~~ 198 (250)
+++|+| -. +.+.||++++||.+
T Consensus 279 aiafsP---~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 279 AIAFSP---RA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred eeccCc---cc----cCCCCCceEecccc
Confidence 999994 22 67789999999998
No 203
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=7.5e-14 Score=109.85 Aligned_cols=207 Identities=10% Similarity=-0.013 Sum_probs=126.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC---CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|.+||.. +...+.+. .+...+.+.+|+|+|+ .|+..+. +..|.+||+.+++...... .+.
T Consensus 186 l~i~D~~-g~~~~~lt-~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~~--------------~~g 248 (433)
T PRK04922 186 LQVADSD-GYNPQTIL-RSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVAS--------------FRG 248 (433)
T ss_pred EEEECCC-CCCceEee-cCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEecc--------------CCC
Confidence 6788875 44445666 6778899999999999 6776653 3479999998776432221 123
Q ss_pred ceeEEecCCCcccCCCCCEEE-EEeCCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----cc
Q 025649 79 FVHAIAIPDADMLDKTNKICV-VAKGDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SG 151 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 151 (250)
...+..|+| +|+.|+ +.+.+| .|.+||+.+++....... .......+|+|||+.++....... ..
T Consensus 249 ~~~~~~~Sp------DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~--~~~~~~~~~spDG~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 249 INGAPSFSP------DGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH--FGIDTEPTWAPDGKSIYFTSDRGGRPQIYR 320 (433)
T ss_pred CccCceECC------CCCEEEEEEeCCCCceEEEEECCCCCeEECccC--CCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 345678998 898775 445555 699999988765432221 234567899999998874321111 10
Q ss_pred --CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC---eEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649 152 --GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 226 (250)
Q Consensus 152 --~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 226 (250)
....+ ...+..+.......+|+ |+|++++..+.++ .|.+||+.++. .. .+ .+........
T Consensus 321 ~dl~~g~-~~~lt~~g~~~~~~~~S---pDG~~Ia~~~~~~~~~~I~v~d~~~g~---------~~-~L-t~~~~~~~p~ 385 (433)
T PRK04922 321 VAASGGS-AERLTFQGNYNARASVS---PDGKKIAMVHGSGGQYRIAVMDLSTGS---------VR-TL-TPGSLDESPS 385 (433)
T ss_pred EECCCCC-eEEeecCCCCccCEEEC---CCCCEEEEEECCCCceeEEEEECCCCC---------eE-EC-CCCCCCCCce
Confidence 00111 11111122334467899 8999988765433 69999998763 21 11 1222344567
Q ss_pred ecCCCCCeEEEeeCC---ceEEEEeC
Q 025649 227 TTPTESENLVVCDTS---KVVKVYSI 249 (250)
Q Consensus 227 ~~~~~~~~l~s~~~d---~~i~vw~~ 249 (250)
|+| ||+.++..+.+ +.|.++++
T Consensus 386 ~sp-dG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 386 FAP-NGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred ECC-CCCEEEEEEecCCceEEEEEEC
Confidence 887 88877665542 34666654
No 204
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=1.9e-15 Score=104.76 Aligned_cols=134 Identities=21% Similarity=0.209 Sum_probs=106.3
Q ss_pred cEEEEcccc----------eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC--CCccceecCCCCCCC
Q 025649 2 WQIIDIRQH----------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNG 69 (250)
Q Consensus 2 i~iwd~~~~----------~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~ 69 (250)
|.+||+.++ +...... .|..+|.++.|.+.-. .=++|+.+..+..|+++.. .+.....
T Consensus 177 vv~wd~S~~~~~~~~~~~~kv~~~~a-sh~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq~~~e-------- 246 (323)
T KOG0322|consen 177 VVIWDLSTGDKIIQLPQSSKVESPNA-SHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQIRKE-------- 246 (323)
T ss_pred EEEEEccCCceeeccccccccccchh-hccCcceeeeechhhc-CCcCCCccccceeeeeccccCcccccce--------
Confidence 678999987 4444555 7999999999987665 4678888889999998643 2211111
Q ss_pred CCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee
Q 025649 70 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 149 (250)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (250)
.+.....+..+.+.| |++++|+++.|+.||+|..++..
T Consensus 247 ---~~lknpGv~gvrIRp------D~KIlATAGWD~RiRVyswrtl~--------------------------------- 284 (323)
T KOG0322|consen 247 ---ITLKNPGVSGVRIRP------DGKILATAGWDHRIRVYSWRTLN--------------------------------- 284 (323)
T ss_pred ---EEecCCCccceEEcc------CCcEEeecccCCcEEEEEeccCC---------------------------------
Confidence 111245688899998 99999999999999999998754
Q ss_pred ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEec
Q 025649 150 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 197 (250)
Q Consensus 150 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~ 197 (250)
++..++-|++.|++++|+ |+.+++|++|.|++|.+|++
T Consensus 285 -------pLAVLkyHsagvn~vAfs---pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 -------PLAVLKYHSAGVNAVAFS---PDCELMAAASKDARISLWKL 322 (323)
T ss_pred -------chhhhhhhhcceeEEEeC---CCCchhhhccCCceEEeeec
Confidence 455778899999999999 88899999999999999986
No 205
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.8e-13 Score=106.23 Aligned_cols=207 Identities=11% Similarity=0.009 Sum_probs=128.1
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec---CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG---LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|.+||..... .+.+. .+...+.+.+|+|||+ .|+..+ .+..|.+||+.+++....... +.
T Consensus 181 l~~~d~dg~~-~~~lt-~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--------------~~ 243 (429)
T PRK03629 181 LRVSDYDGYN-QFVVH-RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQVASF--------------PR 243 (429)
T ss_pred EEEEcCCCCC-CEEee-cCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeEEccCC--------------CC
Confidence 5677776443 34455 5677899999999999 566433 345799999988764333221 23
Q ss_pred ceeEEecCCCcccCCCCCEEEEE-eCCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeee----eecc
Q 025649 79 FVHAIAIPDADMLDKTNKICVVA-KGDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL----DQSG 151 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 151 (250)
......|+| +|+.|+.. +.+| .|.+||+.++........ ...+....|+|||+.++..... ....
T Consensus 244 ~~~~~~~SP------DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~--~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 244 HNGAPAFSP------DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG--RSNNTEPTWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred CcCCeEECC------CCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC--CCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence 345678998 99988765 4444 588999988765443322 2456789999999988743221 1111
Q ss_pred --CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC---CeEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649 152 --GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 226 (250)
Q Consensus 152 --~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 226 (250)
.... ....+..+........|+ |+|++++..+.+ ..|.+||+.++... . .... .......
T Consensus 316 ~d~~~g-~~~~lt~~~~~~~~~~~S---pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-------~--Lt~~--~~~~~p~ 380 (429)
T PRK03629 316 VNINGG-APQRITWEGSQNQDADVS---SDGKFMVMVSSNGGQQHIAKQDLATGGVQ-------V--LTDT--FLDETPS 380 (429)
T ss_pred EECCCC-CeEEeecCCCCccCEEEC---CCCCEEEEEEccCCCceEEEEECCCCCeE-------E--eCCC--CCCCCce
Confidence 0000 111222233345567889 899988876543 35888999886321 1 1111 1223567
Q ss_pred ecCCCCCeEEEeeCCce---EEEEeC
Q 025649 227 TTPTESENLVVCDTSKV---VKVYSI 249 (250)
Q Consensus 227 ~~~~~~~~l~s~~~d~~---i~vw~~ 249 (250)
|+| ||+.|+.++.++. +.++++
T Consensus 381 ~Sp-DG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 381 IAP-NGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred ECC-CCCEEEEEEcCCCceEEEEEEC
Confidence 887 8998888876654 556554
No 206
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=6.9e-14 Score=102.44 Aligned_cols=215 Identities=12% Similarity=0.038 Sum_probs=148.7
Q ss_pred cEEEEcc------cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649 2 WQIIDIR------QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 2 i~iwd~~------~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
+++|+++ +.+.+......|.+.|.|++|..... .+.+|..+++|.+.|+++.+.+..+....
T Consensus 80 ~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qsi~V~~~~~----------- 147 (609)
T KOG4227|consen 80 GRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTVIKHDIETKQSIYVANENN----------- 147 (609)
T ss_pred eeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCcceeEeeecccceeeeeecccC-----------
Confidence 5789876 33555555435678999999999888 89999999999999999998888776221
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe--eccCCCCCCccceeecccceeEEE-------eee
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS--RSKSTTKPLKGSQSTSKVNIRDAE-------MEI 146 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 146 (250)
....|+.+..+| -.+.+++.+.++.|.+||.+..+... ............+-|+|....|+. .+.
T Consensus 148 ~~~~VY~m~~~P------~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~ 221 (609)
T KOG4227|consen 148 NRGDVYHMDQHP------TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNV 221 (609)
T ss_pred cccceeecccCC------CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCc
Confidence 245899999999 68899999999999999999755222 122233355677888887655553 234
Q ss_pred eeeccCeeeeeecc---ccCc---cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC
Q 025649 147 LDQSGGKRLHLDYS---VGGH---TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK 220 (250)
Q Consensus 147 ~~~~~~~~~~~~~~---~~~h---~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 220 (250)
||...... .+.. +.+- ...-.++.|+ |+|+.|++--....-.+||+-+.. +......|..
T Consensus 222 ~D~R~~~~--~~~~~~~~~~L~~~~~~~M~~~~~---~~G~Q~msiRR~~~P~~~D~~S~R---------~~V~k~D~N~ 287 (609)
T KOG4227|consen 222 FDRRMQAR--PVYQRSMFKGLPQENTEWMGSLWS---PSGNQFMSIRRGKCPLYFDFISQR---------CFVLKSDHNP 287 (609)
T ss_pred eeeccccc--hHHhhhccccCcccchhhhheeeC---CCCCeehhhhccCCCEEeeeeccc---------ceeEeccCCC
Confidence 44443221 1111 1121 2223577899 899999887776777888988852 2222233332
Q ss_pred -------ceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 221 -------KVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 221 -------~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.+.+++|. +...+++|+.+=.|++|.++
T Consensus 288 ~GY~N~~T~KS~~F~--~D~~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFI--DDYTVATGSDHWGIHIWKLP 322 (609)
T ss_pred Ccceeeeeeeeeeee--cceeeeccCcccceEEEecC
Confidence 46677776 34459999999999999874
No 207
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=3.9e-13 Score=105.95 Aligned_cols=207 Identities=13% Similarity=0.065 Sum_probs=127.7
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC---CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|.++|.. +...+.+. .|...+.+.+|+|||+ .|+..+. +..|.+||+.+++...... .+.
T Consensus 184 l~~~d~d-g~~~~~lt-~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l~~--------------~~g 246 (435)
T PRK05137 184 LAIMDQD-GANVRYLT-DGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELVGN--------------FPG 246 (435)
T ss_pred EEEECCC-CCCcEEEe-cCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEeec--------------CCC
Confidence 5677764 44456676 7888999999999999 6666543 4689999998876532221 234
Q ss_pred ceeEEecCCCcccCCCCCEEE-EEeCCCe--EEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----c-
Q 025649 79 FVHAIAIPDADMLDKTNKICV-VAKGDGV--VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----S- 150 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~-~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~- 150 (250)
.+.+.+|+| +|+.|+ +.+.++. |.+||+.++....... .........|+|||+.++....... .
T Consensus 247 ~~~~~~~SP------DG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~--~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 247 MTFAPRFSP------DGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD--SPAIDTSPSYSPDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred cccCcEECC------CCCEEEEEEecCCCceEEEEECCCCceEEccC--CCCccCceeEcCCCCEEEEEECCCCCCeEEE
Confidence 566788998 898775 4455554 7777988776543222 2245667899999998874321111 1
Q ss_pred -cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC---CeEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649 151 -GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 226 (250)
Q Consensus 151 -~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 226 (250)
+.... ....+..+...+....|+ |+|+.|+..+.+ ..|.+||+..+.. ..+ .....+....
T Consensus 319 ~d~~g~-~~~~lt~~~~~~~~~~~S---pdG~~ia~~~~~~~~~~i~~~d~~~~~~----------~~l-t~~~~~~~p~ 383 (435)
T PRK05137 319 MNADGS-NPRRISFGGGRYSTPVWS---PRGDLIAFTKQGGGQFSIGVMKPDGSGE----------RIL-TSGFLVEGPT 383 (435)
T ss_pred EECCCC-CeEEeecCCCcccCeEEC---CCCCEEEEEEcCCCceEEEEEECCCCce----------Eec-cCCCCCCCCe
Confidence 00000 111222223445667899 899998876543 3688888765421 111 1222456678
Q ss_pred ecCCCCCeEEEeeCC------ceEEEEeC
Q 025649 227 TTPTESENLVVCDTS------KVVKVYSI 249 (250)
Q Consensus 227 ~~~~~~~~l~s~~~d------~~i~vw~~ 249 (250)
|+| ||+.|+..+.+ ..+.++|+
T Consensus 384 ~sp-DG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 384 WAP-NGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred ECC-CCCEEEEEEccCCCCCcceEEEEEC
Confidence 998 88877654432 24666664
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=1.7e-14 Score=109.15 Aligned_cols=179 Identities=18% Similarity=0.165 Sum_probs=124.2
Q ss_pred CCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEE
Q 025649 31 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI 110 (250)
Q Consensus 31 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~ 110 (250)
|++- -|+.|-.-|.|.+.|....+..+.+... .......++++.|-| .+...++++-.+|.+.+|
T Consensus 183 ~~g~-dllIGf~tGqvq~idp~~~~~sklfne~---------r~i~ktsvT~ikWvp-----g~~~~Fl~a~~sGnlyly 247 (636)
T KOG2394|consen 183 PKGL-DLLIGFTTGQVQLIDPINFEVSKLFNEE---------RLINKSSVTCIKWVP-----GSDSLFLVAHASGNLYLY 247 (636)
T ss_pred CCCc-ceEEeeccCceEEecchhhHHHHhhhhc---------ccccccceEEEEEEe-----CCCceEEEEEecCceEEe
Confidence 4554 4677777889999887663332223211 111346799999998 467788888899999999
Q ss_pred eCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC
Q 025649 111 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK 190 (250)
Q Consensus 111 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~ 190 (250)
|.+..- .....+-...+++..+. +..+...... .++..+.-..+.|...+|+ |||++||+.+.||
T Consensus 248 ~~~~~~---------~~t~p~~~~~k~~~~f~-i~t~ksk~~r--NPv~~w~~~~g~in~f~FS---~DG~~LA~VSqDG 312 (636)
T KOG2394|consen 248 DKEIVC---------GATAPSYQALKDGDQFA-ILTSKSKKTR--NPVARWHIGEGSINEFAFS---PDGKYLATVSQDG 312 (636)
T ss_pred eccccc---------cCCCCcccccCCCCeeE-EeeeeccccC--CccceeEeccccccceeEc---CCCceEEEEecCc
Confidence 983210 01122223334454444 2222211111 2233333345589999999 8999999999999
Q ss_pred eEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 191 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 191 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.+||||..+. +++..++..-+...+++|+| ||++|++|+.|..|.||.+
T Consensus 313 fLRvF~fdt~---------eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 313 FLRIFDFDTQ---------ELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred eEEEeeccHH---------HHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEe
Confidence 9999999997 67677778888999999998 9999999999999999986
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.62 E-value=7.5e-15 Score=111.28 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=103.0
Q ss_pred EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc
Q 025649 36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 115 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 115 (250)
.|+.++.||.+.+-+- .++..+.+.. |...+.+-.|+| +|.-|++++.||.|++|.-..
T Consensus 77 ~~~i~s~DGkf~il~k-~~rVE~sv~A-------------H~~A~~~gRW~~------dGtgLlt~GEDG~iKiWSrsG- 135 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNK-SARVERSISA-------------HAAAISSGRWSP------DGAGLLTAGEDGVIKIWSRSG- 135 (737)
T ss_pred eEEEEcCCceEEEecc-cchhhhhhhh-------------hhhhhhhcccCC------CCceeeeecCCceEEEEeccc-
Confidence 6888999999988765 3555445542 578899999999 999999999999999998653
Q ss_pred eeEeeccCCCCCCccceeecccceeEEEeeeeeec--cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEE
Q 025649 116 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS--GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK 193 (250)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~ 193 (250)
........ ....+.|++|.|+...++........ .......+...++|.+-|.++.|+ +..+++++|++|-..+
T Consensus 136 MLRStl~Q-~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~---~~s~lI~sgGED~kfK 211 (737)
T KOG1524|consen 136 MLRSTVVQ-NEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWS---TQSNIIASGGEDFRFK 211 (737)
T ss_pred hHHHHHhh-cCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecC---ccccceeecCCceeEE
Confidence 22222222 23789999999988766632222221 122222345678999999999999 7889999999999999
Q ss_pred EEecCC
Q 025649 194 VWDCSR 199 (250)
Q Consensus 194 iwd~~~ 199 (250)
+||...
T Consensus 212 vWD~~G 217 (737)
T KOG1524|consen 212 IWDAQG 217 (737)
T ss_pred eecccC
Confidence 999876
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=4.2e-14 Score=115.01 Aligned_cols=184 Identities=15% Similarity=0.140 Sum_probs=128.6
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC---CccceecCCCCCCCCCCcccCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
+|+|||.+.-+....+..+-...|+++.-+....+++++|-.||.|++||.+... .+...+. |.
T Consensus 1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~-------------h~ 1254 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE-------------HN 1254 (1387)
T ss_pred EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc-------------cC
Confidence 4899999988888888756677888888765443389999999999999987543 2333332 23
Q ss_pred Cc--eeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCee
Q 025649 78 AF--VHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKR 154 (250)
Q Consensus 78 ~~--v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (250)
+. |..+.+.+ .|- .|++|+.||.|++||++......
T Consensus 1255 ~~~~Iv~~slq~------~G~~elvSgs~~G~I~~~DlR~~~~e~----------------------------------- 1293 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQR------QGLGELVSGSQDGDIQLLDLRMSSKET----------------------------------- 1293 (1387)
T ss_pred CcccceeEEeec------CCCcceeeeccCCeEEEEecccCcccc-----------------------------------
Confidence 33 88888876 443 59999999999999999631100
Q ss_pred eeeeccccCc---cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649 155 LHLDYSVGGH---TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 231 (250)
Q Consensus 155 ~~~~~~~~~h---~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 231 (250)
......| .+..+++..+ +....+|+|+. +.|+||++.........-.+. ....-...+.+++|+| .
T Consensus 1294 ---~~~iv~~~~yGs~lTal~VH---~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~---F~~q~~gs~scL~FHP-~ 1362 (1387)
T KOG1517|consen 1294 ---FLTIVAHWEYGSALTALTVH---EHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPG---FMGQRIGSVSCLAFHP-H 1362 (1387)
T ss_pred ---cceeeeccccCccceeeeec---cCCCeeeecCc-ceEEEEecChhhhcccccCcc---cccCcCCCcceeeecc-h
Confidence 0011112 2258899999 88899999998 999999998743221100001 1112234578999998 5
Q ss_pred CCeEEEeeCCceEEEEeC
Q 025649 232 SENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 232 ~~~l~s~~~d~~i~vw~~ 249 (250)
.-++++|+.|..|.||..
T Consensus 1363 ~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1363 RLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred hHhhhhccCCceEEEeec
Confidence 556889999999999964
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=9.6e-14 Score=98.85 Aligned_cols=162 Identities=13% Similarity=0.094 Sum_probs=126.3
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC---CccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 96 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (250)
-..+|+|.+|++|+. .++.+-....|.||.....+ ..++++ . |...|+++.|+| ..+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls-~------------Hd~~vtgvdWap------~sn 68 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLS-E------------HDKIVTGVDWAP------KSN 68 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCceeceehh-h------------hCcceeEEeecC------CCC
Confidence 457899999999999 89999999999999987654 344444 2 678899999999 899
Q ss_pred EEEEEeCCCeEEEEeCCC-ceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeec
Q 025649 97 ICVVAKGDGVVDVINIES-ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM 175 (250)
Q Consensus 97 ~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 175 (250)
.|++++.|..-++|.... ++- ++.-.+..+...+++|.|+
T Consensus 69 rIvtcs~drnayVw~~~~~~~W--------------------------------------kptlvLlRiNrAAt~V~Ws- 109 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGTW--------------------------------------KPTLVLLRINRAATCVKWS- 109 (361)
T ss_pred ceeEccCCCCccccccCCCCee--------------------------------------ccceeEEEeccceeeEeec-
Confidence 999999999999999853 221 1112344567789999999
Q ss_pred CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 176 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 176 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
|+++.|++||.-+.|.||-++....-- -....-+.+.+.|+++.|+| ++-++++|+.|++.+|+.
T Consensus 110 --P~enkFAVgSgar~isVcy~E~ENdWW-----VsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 110 --PKENKFAVGSGARLISVCYYEQENDWW-----VSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred --CcCceEEeccCccEEEEEEEeccccee-----hhhhhCCccccceeeeeccC-CcceecccccCcceeEEE
Confidence 899999999999999999877642110 00012245677899999998 677899999999999985
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=1.1e-13 Score=98.62 Aligned_cols=177 Identities=16% Similarity=0.119 Sum_probs=133.8
Q ss_pred cEEEEccc---ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc-CCCCccceecCCCCCCCCCCcccCC
Q 025649 2 WQIIDIRQ---HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 2 i~iwd~~~---~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|.||.... .+...+++ .|...|+.++|+|..+ .|++|+.|..-.+|... .++-..++.+ ..+.
T Consensus 34 vhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~~~~WkptlvL-----------lRiN 100 (361)
T KOG1523|consen 34 VHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPSGGTWKPTLVL-----------LRIN 100 (361)
T ss_pred EEEEEecCCCCceeceehh-hhCcceeEEeecCCCC-ceeEccCCCCccccccCCCCeeccceeE-----------EEec
Confidence 44555543 34677888 9999999999999998 79999999999999984 4432222211 1146
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee---EeeccCCCCCCccceeecccceeEEEeeeeeeccC--
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN---ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG-- 152 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 152 (250)
...+++.|+| .++.+++|+.-..|.+|-.+.... .+.++.+....+.+++|+|++-+++ .|+.|....
T Consensus 101 rAAt~V~WsP------~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla-aGs~D~k~rVf 173 (361)
T KOG1523|consen 101 RAATCVKWSP------KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA-AGSTDGKCRVF 173 (361)
T ss_pred cceeeEeecC------cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec-ccccCcceeEE
Confidence 7899999999 999999999999999998876442 2345556668899999999999888 554443311
Q ss_pred --------------------eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649 153 --------------------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 201 (250)
Q Consensus 153 --------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~ 201 (250)
.-.+.+.++....+.+..+.|+ |.|..|+-.+.|..+.+=|.....
T Consensus 174 SayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs---~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 174 SAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS---PSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred EEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC---CCCCEeeEecCCCceEEeecCCCc
Confidence 1122334454566889999999 899999999999999999988753
No 213
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.2e-13 Score=106.93 Aligned_cols=197 Identities=13% Similarity=0.013 Sum_probs=119.3
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC---CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|.++|. .++....+. .+...+.+.+|+|+|+ .|+..+. ...|.+||+.+++...... .+.
T Consensus 178 L~~~D~-dG~~~~~l~-~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~~--------------~~g 240 (427)
T PRK02889 178 LQISDA-DGQNAQSAL-SSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVAN--------------FKG 240 (427)
T ss_pred EEEECC-CCCCceEec-cCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEeec--------------CCC
Confidence 455665 355555666 6788899999999998 6665553 2469999998886543221 123
Q ss_pred ceeEEecCCCcccCCCCCEEE-EEeCCCeEEEEe--CCCceeEeeccCCCCCCccceeecccceeEEEeeeee----ecc
Q 025649 79 FVHAIAIPDADMLDKTNKICV-VAKGDGVVDVIN--IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSG 151 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 151 (250)
...+.+|+| +++.|+ +.+.++...+|. +.++.. ..+.. .........|+|||+.++...... ...
T Consensus 241 ~~~~~~~SP------DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 241 SNSAPAWSP------DGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYR 312 (427)
T ss_pred CccceEECC------CCCEEEEEEccCCCceEEEEECCCCCc-EECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEE
Confidence 456789998 998776 556777766665 444442 22222 224456788999999887432111 111
Q ss_pred ----CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC---eEEEEecCCCcceecccccceeeeeeccCCceeE
Q 025649 152 ----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 224 (250)
Q Consensus 152 ----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 224 (250)
....+.+ .+.+ .......|+ |+|++++..+.++ .|.+||+.++.. . .... ......
T Consensus 313 ~~~~~g~~~~l-t~~g--~~~~~~~~S---pDG~~Ia~~s~~~g~~~I~v~d~~~g~~---------~-~lt~-~~~~~~ 375 (427)
T PRK02889 313 MPASGGAAQRV-TFTG--SYNTSPRIS---PDGKLLAYISRVGGAFKLYVQDLATGQV---------T-ALTD-TTRDES 375 (427)
T ss_pred EECCCCceEEE-ecCC--CCcCceEEC---CCCCEEEEEEccCCcEEEEEEECCCCCe---------E-EccC-CCCccC
Confidence 0111111 1222 223456788 8999998776554 699999988632 1 1111 122356
Q ss_pred EEecCCCCCeEEEeeCC
Q 025649 225 LCTTPTESENLVVCDTS 241 (250)
Q Consensus 225 ~~~~~~~~~~l~s~~~d 241 (250)
..|+| ||+.|+.++.+
T Consensus 376 p~~sp-dg~~l~~~~~~ 391 (427)
T PRK02889 376 PSFAP-NGRYILYATQQ 391 (427)
T ss_pred ceECC-CCCEEEEEEec
Confidence 78998 78877665543
No 214
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=5.2e-14 Score=96.73 Aligned_cols=176 Identities=10% Similarity=0.041 Sum_probs=116.3
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
..|..-+++|.++ +|+.|..+|.|.+..+++...-.... +..........|..+++.++|. ..+|++|
T Consensus 11 ~tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~---~gk~~iv~eqahdgpiy~~~f~--------d~~Lls~ 78 (325)
T KOG0649|consen 11 NTVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEP---PGKLKIVPEQAHDGPIYYLAFH--------DDFLLSG 78 (325)
T ss_pred HHHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCC---CCCcceeeccccCCCeeeeeee--------hhheeec
Confidence 3466778999999 89999999999999986432111111 0111112224578899999987 3456665
Q ss_pred eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCc
Q 025649 102 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181 (250)
Q Consensus 102 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 181 (250)
+ ||.|+-|..+........+ ..+... .+.++-...-..|+++-.. |..+
T Consensus 79 g-dG~V~gw~W~E~~es~~~K-------------------------~lwe~~--~P~~~~~~evPeINam~ld---P~en 127 (325)
T KOG0649|consen 79 G-DGLVYGWEWNEEEESLATK-------------------------RLWEVK--IPMQVDAVEVPEINAMWLD---PSEN 127 (325)
T ss_pred c-CceEEEeeehhhhhhccch-------------------------hhhhhc--CccccCcccCCccceeEec---cCCC
Confidence 4 5999999887533210000 000000 0011101123468888888 5555
Q ss_pred EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 182 YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 182 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
-++.++.|+.++-||++++ ...+.+.+|+.-+.++.--...+ .+++|+.||++++||.+
T Consensus 128 Si~~AgGD~~~y~~dlE~G---------~i~r~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~k 186 (325)
T KOG0649|consen 128 SILFAGGDGVIYQVDLEDG---------RIQREYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWDTK 186 (325)
T ss_pred cEEEecCCeEEEEEEecCC---------EEEEEEcCCcceeeeeeecccCc-ceeecCCCccEEEEecc
Confidence 5556668999999999998 77788999999999997744355 48999999999999964
No 215
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.59 E-value=4e-14 Score=107.40 Aligned_cols=186 Identities=16% Similarity=0.106 Sum_probs=131.5
Q ss_pred cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649 9 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA 88 (250)
Q Consensus 9 ~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 88 (250)
.++..+.+. +|.+.|.+-.|+|+|. -|+|++.||.|++|.-. |-...++. + ....|+|++|.|
T Consensus 93 ~~rVE~sv~-AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrs-GMLRStl~-Q------------~~~~v~c~~W~p- 155 (737)
T KOG1524|consen 93 SARVERSIS-AHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRS-GMLRSTVV-Q------------NEESIRCARWAP- 155 (737)
T ss_pred cchhhhhhh-hhhhhhhhcccCCCCc-eeeeecCCceEEEEecc-chHHHHHh-h------------cCceeEEEEECC-
Confidence 344555667 8999999999999999 79999999999999863 43332322 2 347899999999
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeeeeeeccccCc
Q 025649 89 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDYSVGGH 164 (250)
Q Consensus 89 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h 164 (250)
+.+-++-+. .+.+.+=.+.....+...+.+ ++.+.++.|++....+++ +..|. ++. ....+..-..|
T Consensus 156 -----~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAH-DGiiL~~~W~~~s~lI~s-gGED~kfKvWD~-~G~~Lf~S~~~ 226 (737)
T KOG1524|consen 156 -----NSNSIVFCQ-GGHISIKPLAANSKIIRWRAH-DGLVLSLSWSTQSNIIAS-GGEDFRFKIWDA-QGANLFTSAAE 226 (737)
T ss_pred -----CCCceEEec-CCeEEEeecccccceeEEecc-CcEEEEeecCccccceee-cCCceeEEeecc-cCcccccCChh
Confidence 555554442 356666666655555555554 488999999999999994 33222 222 23345666789
Q ss_pred cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649 165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV 244 (250)
Q Consensus 165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 244 (250)
..+|++++|+ |+ +.++.+|. .++++= ....+.|..++|++ ||..++.|...|.+
T Consensus 227 ey~ITSva~n---pd-~~~~v~S~-nt~R~~--------------------~p~~GSifnlsWS~-DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 227 EYAITSVAFN---PE-KDYLLWSY-NTARFS--------------------SPRVGSIFNLSWSA-DGTQATCGTSTGQL 280 (737)
T ss_pred ccceeeeeec---cc-cceeeeee-eeeeec--------------------CCCccceEEEEEcC-CCceeeccccCceE
Confidence 9999999999 77 66666653 344421 22345789999998 99999998888876
Q ss_pred EE
Q 025649 245 KV 246 (250)
Q Consensus 245 ~v 246 (250)
.+
T Consensus 281 ~~ 282 (737)
T KOG1524|consen 281 IV 282 (737)
T ss_pred EE
Confidence 43
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.5e-13 Score=108.02 Aligned_cols=185 Identities=15% Similarity=0.121 Sum_probs=115.0
Q ss_pred cEEEEccccee--eeeeccCCCCCeeeEEEcCCCCeEEEE-ecCCCeEEEE--EccCCCCccceecCCCCCCCCCCcccC
Q 025649 2 WQIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVIS-GGLDSKLVMW--DFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 2 i~iwd~~~~~~--~~~l~~~h~~~v~~l~~~~~~~~~l~s-~s~dg~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
|++||+.+++. +..+. +| ...++|+|||+ .|+. .+.+|.+.|| |+.+++. ..+.. +
T Consensus 230 i~i~dl~tg~~~~l~~~~-g~---~~~~~wSPDG~-~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~-------------~ 290 (429)
T PRK01742 230 LVVHDLRSGARKVVASFR-GH---NGAPAFSPDGS-RLAFASSKDGVLNIYVMGANGGTP-SQLTS-------------G 290 (429)
T ss_pred EEEEeCCCCceEEEecCC-Cc---cCceeECCCCC-EEEEEEecCCcEEEEEEECCCCCe-Eeecc-------------C
Confidence 78999988754 33344 44 34689999999 5655 4568876666 5554443 23321 2
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCce-eEeeccCCCCCCccceeecccceeEEEeee-----eee
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESEL-NISRSKSTTKPLKGSQSTSKVNIRDAEMEI-----LDQ 149 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 149 (250)
...+.+..|+| +++.|+.++ .++...+|+++... ..... .. .. ....|+|+|+.++..+. +|.
T Consensus 291 ~~~~~~~~wSp------DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~--~~-~~~~~SpDG~~ia~~~~~~i~~~Dl 360 (429)
T PRK01742 291 AGNNTEPSWSP------DGQSILFTSDRSGSPQVYRMSASGGGASLV-GG--RG-YSAQISADGKTLVMINGDNVVKQDL 360 (429)
T ss_pred CCCcCCEEECC------CCCEEEEEECCCCCceEEEEECCCCCeEEe-cC--CC-CCccCCCCCCEEEEEcCCCEEEEEC
Confidence 34567889998 898776554 67888888765421 12222 21 11 45789999999875432 222
Q ss_pred ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649 150 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 229 (250)
Q Consensus 150 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 229 (250)
..... +.+ ...+ ....+.|+ |+|++|+.++.++.+.+|++..... .....+..|.+.+...+|+|
T Consensus 361 ~~g~~-~~l--t~~~--~~~~~~~s---PdG~~i~~~s~~g~~~~l~~~~~~G-------~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 361 TSGST-EVL--SSTF--LDESPSIS---PNGIMIIYSSTQGLGKVLQLVSADG-------RFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCCCe-EEe--cCCC--CCCCceEC---CCCCEEEEEEcCCCceEEEEEECCC-------CceEEccCCCCCCCCcccCC
Confidence 11111 111 1111 23457788 8999999999999888887643110 44455667888888899997
Q ss_pred C
Q 025649 230 T 230 (250)
Q Consensus 230 ~ 230 (250)
.
T Consensus 426 ~ 426 (429)
T PRK01742 426 Y 426 (429)
T ss_pred C
Confidence 4
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=7.7e-13 Score=92.25 Aligned_cols=119 Identities=20% Similarity=0.329 Sum_probs=86.8
Q ss_pred eeeeccCCCCCeeeEEEcCCCCeEEE--EecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649 13 YKSLRAGHSSICSSVQFIPWKPWEVI--SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM 90 (250)
Q Consensus 13 ~~~l~~~h~~~v~~l~~~~~~~~~l~--s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (250)
...+.....++|.+++|+|+|+ .|+ .|..++.|.+||++ ++.+..+. ...+..+.|+|
T Consensus 51 ~~~i~l~~~~~I~~~~WsP~g~-~favi~g~~~~~v~lyd~~-~~~i~~~~---------------~~~~n~i~wsP--- 110 (194)
T PF08662_consen 51 VESIELKKEGPIHDVAWSPNGN-EFAVIYGSMPAKVTLYDVK-GKKIFSFG---------------TQPRNTISWSP--- 110 (194)
T ss_pred cceeeccCCCceEEEEECcCCC-EEEEEEccCCcccEEEcCc-ccEeEeec---------------CCCceEEEECC---
Confidence 3444312456799999999998 443 35567899999996 55555553 35678899999
Q ss_pred cCCCCCEEEEEeC---CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCcccc
Q 025649 91 LDKTNKICVVAKG---DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA 167 (250)
Q Consensus 91 ~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 167 (250)
+|++|++++. .|.|.+||.++.+.+. ... | ..
T Consensus 111 ---~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----------------------------------------~~~-~-~~ 145 (194)
T PF08662_consen 111 ---DGRFLVLAGFGNLNGDLEFWDVRKKKKIS----------------------------------------TFE-H-SD 145 (194)
T ss_pred ---CCCEEEEEEccCCCcEEEEEECCCCEEee----------------------------------------ccc-c-Cc
Confidence 9999999874 4679999999644322 221 2 23
Q ss_pred EEEEEeecCCCCCcEEEEee------CCCeEEEEecCC
Q 025649 168 ASCVAFSMFGERGKYLISGG------NDKLVKVWDCSR 199 (250)
Q Consensus 168 v~~~~~~p~~~~~~~l~s~~------~d~~i~iwd~~~ 199 (250)
++.++|+ |+|++|+++. .|+.++||+...
T Consensus 146 ~t~~~Ws---PdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 146 ATDVEWS---PDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEEEEc---CCCCEEEEEEeccceeccccEEEEEecC
Confidence 6788999 8999999876 378899999865
No 218
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.9e-12 Score=92.98 Aligned_cols=200 Identities=16% Similarity=0.186 Sum_probs=127.0
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecC-CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI 97 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (250)
|| .+|++++|.+||. .+++++. |..|.|||..++..+.....+ ...+.-+.|+| ++.+
T Consensus 194 gh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~~g-------------lgg~slLkwSP------dgd~ 252 (445)
T KOG2139|consen 194 GH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIPKG-------------LGGFSLLKWSP------DGDV 252 (445)
T ss_pred CC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccccccC-------------CCceeeEEEcC------CCCE
Confidence 44 6899999999999 7888776 578999999998876665434 56788999999 9999
Q ss_pred EEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee---------eeeccC--------eeeeeecc
Q 025649 98 CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI---------LDQSGG--------KRLHLDYS 160 (250)
Q Consensus 98 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--------~~~~~~~~ 160 (250)
|+++.-|+..++|+.............. ..+....|+|+|+.++.+.. .+.... ....++..
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lgs-grvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILGS-GRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred EEEecccceeeeehhcccceecceeccC-CceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc
Confidence 9999999999999665433222222221 47888999999998874221 111111 01111111
Q ss_pred cc------C---ccccEEEEEeecCCCCCcEEEEeeCCC--------eEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649 161 VG------G---HTAAASCVAFSMFGERGKYLISGGNDK--------LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 223 (250)
Q Consensus 161 ~~------~---h~~~v~~~~~~p~~~~~~~l~s~~~d~--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (250)
+. + -.+++.+++|. |.|.+|++.-..+ .|.+||.+...... +...-..-.....
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawD---psGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve------ls~cg~i~ge~P~ 402 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWD---PSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE------LSYCGMIGGEYPA 402 (445)
T ss_pred chhhhhhcCcccccCccceeeEC---CCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE------EEecccccCCCCc
Confidence 11 1 13578899999 8999999875433 47778887753221 1000001111234
Q ss_pred EEEecC--CCCCeEEEeeCCceEEEEeC
Q 025649 224 WLCTTP--TESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 224 ~~~~~~--~~~~~l~s~~~d~~i~vw~~ 249 (250)
.+.|.| +++.+|..+=..|.+.-|++
T Consensus 403 ~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 403 YISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred eEEeeecccCCcEEEEEeccCceEeeee
Confidence 455554 35555555666676666653
No 219
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.54 E-value=9e-14 Score=99.57 Aligned_cols=198 Identities=14% Similarity=0.072 Sum_probs=137.3
Q ss_pred EEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEe
Q 025649 5 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA 84 (250)
Q Consensus 5 wd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 84 (250)
-|.++-+..+.+. --+.|.-+.|..+....|.....|+.|.+|++...+--..+..+ ++.+.++.
T Consensus 34 Rd~~tlq~~qlf~--cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg-------------~agls~~~ 98 (447)
T KOG4497|consen 34 RDSETLQLHQLFL--CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG-------------QAGLSSIS 98 (447)
T ss_pred eccchhhHHHHHH--HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC-------------CCcceeee
Confidence 3444444443333 24578889999998866777888999999999888777777755 67899999
Q ss_pred cCCCcccCCCCC-EEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc------Ceeeee
Q 025649 85 IPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG------GKRLHL 157 (250)
Q Consensus 85 ~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 157 (250)
|+| +|+ +|.+...|-.|.+|.+.+.+....... +..+..++|+|||++.+.....|..+ ...-..
T Consensus 99 WSP------dgrhiL~tseF~lriTVWSL~t~~~~~~~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l 170 (447)
T KOG4497|consen 99 WSP------DGRHILLTSEFDLRITVWSLNTQKGYLLPHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL 170 (447)
T ss_pred ECC------CcceEeeeecceeEEEEEEeccceeEEeccc--ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence 999 885 556667899999999998665443322 35668899999999988444333332 122233
Q ss_pred eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE
Q 025649 158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV 237 (250)
Q Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 237 (250)
++.+.-..-..+.+.|+ |||..|+ +||---. .......-+-.+..++|+| .+++|+.
T Consensus 171 l~~f~~dT~DltgieWs---Pdg~~la---------Vwd~~Le----------ykv~aYe~~lG~k~v~wsP-~~qflav 227 (447)
T KOG4497|consen 171 LKEFKLDTIDLTGIEWS---PDGNWLA---------VWDNVLE----------YKVYAYERGLGLKFVEWSP-CNQFLAV 227 (447)
T ss_pred HHhcCCCcccccCceEC---CCCcEEE---------Eecchhh----------heeeeeeeccceeEEEecc-ccceEEe
Confidence 45566566677899999 8887665 5553331 1001111123577899998 7899999
Q ss_pred eeCCceEEEEe
Q 025649 238 CDTSKVVKVYS 248 (250)
Q Consensus 238 ~~~d~~i~vw~ 248 (250)
|+.|+.+++-|
T Consensus 228 GsyD~~lrvln 238 (447)
T KOG4497|consen 228 GSYDQMLRVLN 238 (447)
T ss_pred eccchhhhhhc
Confidence 99999988754
No 220
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=4.3e-12 Score=101.38 Aligned_cols=107 Identities=10% Similarity=0.079 Sum_probs=85.4
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
.|.-.+++.++||+++ ++++|..||.|.+|.--..+ .+......+-+|.+.|.+++|++ +|.+|
T Consensus 203 ~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~---------~~~~t~t~lHWH~~~V~~L~fS~------~G~~L 266 (792)
T KOG1963|consen 203 HHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSS---------DDSETCTLLHWHHDEVNSLSFSS------DGAYL 266 (792)
T ss_pred hhcccceeEEeccccc-eEEEeccCCcEEEEeccccc---------cccccceEEEecccccceeEEec------CCceE
Confidence 4777899999999999 99999999999999753210 00112234456788999999998 99999
Q ss_pred EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE
Q 025649 99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 143 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (250)
++|+..|.+.+|.+.+++ .++-......+..+.++||+.+.+.
T Consensus 267 lSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 267 LSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSL 309 (792)
T ss_pred eecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEE
Confidence 999999999999999988 3334444588999999999988873
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=2.9e-12 Score=93.00 Aligned_cols=184 Identities=12% Similarity=0.011 Sum_probs=124.1
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
..+..++|++.-- .++++..|-+|++||-.. ++...++.. ....|++++|.| ..++.|++|
T Consensus 99 ~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~Lks~------------sQrnvtclawRP-----lsaselavg 159 (445)
T KOG2139|consen 99 IDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTKLKSV------------SQRNVTCLAWRP-----LSASELAVG 159 (445)
T ss_pred cceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCceecch------------hhcceeEEEecc-----CCcceeeee
Confidence 4577899999665 688999999999999876 444455433 357899999999 466788888
Q ss_pred eCCCeEEEEeCCCcee------------EeeccCCCCCCccceeecccceeEEEee----eeeeccCeeeeeeccccCcc
Q 025649 102 KGDGVVDVINIESELN------------ISRSKSTTKPLKGSQSTSKVNIRDAEME----ILDQSGGKRLHLDYSVGGHT 165 (250)
Q Consensus 102 ~~d~~i~~~d~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~h~ 165 (250)
+..| |.+|....... ...+..+....+.++.|.+||..+++.. ..-.++......+.-..-..
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl 238 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL 238 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC
Confidence 8855 89997753111 1123333447899999999999998632 22223322222111112234
Q ss_pred ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649 166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 238 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 238 (250)
+.++-+.|| |+|.+|+++.-|+..++|+..... -.....--.+.|...+|+| +|++|+-+
T Consensus 239 gg~slLkwS---Pdgd~lfaAt~davfrlw~e~q~w---------t~erw~lgsgrvqtacWsp-cGsfLLf~ 298 (445)
T KOG2139|consen 239 GGFSLLKWS---PDGDVLFAATCDAVFRLWQENQSW---------TKERWILGSGRVQTACWSP-CGSFLLFA 298 (445)
T ss_pred CceeeEEEc---CCCCEEEEecccceeeeehhcccc---------eecceeccCCceeeeeecC-CCCEEEEE
Confidence 668889999 899999999999999999655431 1112222334899999998 77765443
No 222
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.1e-13 Score=104.73 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=130.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|.|.++...+...-|+ --.+.|.++.|+|... +|+.++. ..|++||+...+.++.+..+ ...|.
T Consensus 548 VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqelvKkL~tg-------------~kwiS 611 (733)
T KOG0650|consen 548 VLIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQELVKKLLTG-------------SKWIS 611 (733)
T ss_pred EEEEecccccccCchh-hcCCceeEEEecCCCc-eEEEEec-cceEEEehhHHHHHHHHhcC-------------Ceeee
Confidence 4566666666666665 5677899999999998 6777765 58999999888777777655 57899
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec-----------
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----------- 150 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 150 (250)
+++++| .|.-|+.|+.|+.+..+|+.-..........+...+.+++|++.-.+++ +++-|+.
T Consensus 612 ~msihp------~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfa-s~sdDgtv~Vfhg~VY~D 684 (733)
T KOG0650|consen 612 SMSIHP------NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFA-SGSDDGTVIVFHGMVYND 684 (733)
T ss_pred eeeecC------CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceee-eecCCCcEEEEeeeeehh
Confidence 999999 9999999999999999999876555444444457788899888877777 3333332
Q ss_pred --cCeeeeeeccccCcccc----EEEEEeecCCCCCcEEEEeeCCCeEEEE
Q 025649 151 --GGKRLHLDYSVGGHTAA----ASCVAFSMFGERGKYLISGGNDKLVKVW 195 (250)
Q Consensus 151 --~~~~~~~~~~~~~h~~~----v~~~~~~p~~~~~~~l~s~~~d~~i~iw 195 (250)
.....-++..+.+|... |..+.|+ |...+|++++.||+|++|
T Consensus 685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wH---P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWH---PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhcCCceEeeeeccCceeecccceEeeccc---CCCceEEecCCCceEEee
Confidence 12335567888999766 8888999 788899999999999998
No 223
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.50 E-value=1.6e-13 Score=116.97 Aligned_cols=183 Identities=16% Similarity=0.163 Sum_probs=134.3
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
.+-..|.++.-+|... +.+||+.||.|++|....++.+..++.. .+..++.+.|+- .|+.+
T Consensus 2206 ~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~------------g~s~vtr~~f~~------qGnk~ 2266 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTA------------GNSRVTRSRFNH------QGNKF 2266 (2439)
T ss_pred cccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeecc------------Ccchhhhhhhcc------cCCce
Confidence 4557788999999999 8999999999999999999988888755 357788888987 89999
Q ss_pred EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceee----------cccceeEEEeeeeeeccCeeeeeeccccCccccE
Q 025649 99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST----------SKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA 168 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 168 (250)
..+..||.+.+|.... .+......+........| +++++- ++.||........++. ..|.+.+
T Consensus 2267 ~i~d~dg~l~l~q~~p--k~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n---~~lwDtl~~~~~s~v~--~~H~~ga 2339 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASP--KPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRN---VCLWDTLLPPMNSLVH--TCHDGGA 2339 (2439)
T ss_pred eeeccCCceeecccCC--cceeccccCCccccceeeeehhhhccccCCCCCc---ccchhcccCcccceee--eecCCCc
Confidence 9999999999999872 122222222233333333 222222 3344544444344444 7899999
Q ss_pred EEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 169 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 169 ~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
++++|. |..+.|++|+.+|.|++||++.. ++...+.. +. ...+|++|+..|.|+||+
T Consensus 2340 T~l~~~---P~~qllisggr~G~v~l~D~rqr---------ql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2340 TVLAYA---PKHQLLISGGRKGEVCLFDIRQR---------QLRHTFQA---------LD--TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred eEEEEc---CcceEEEecCCcCcEEEeehHHH---------HHHHHhhh---------hh--hhheeeccCcccceEEEE
Confidence 999999 88899999999999999999986 33222222 32 345899999999999998
Q ss_pred CC
Q 025649 249 IS 250 (250)
Q Consensus 249 ~~ 250 (250)
+.
T Consensus 2397 ~s 2398 (2439)
T KOG1064|consen 2397 LS 2398 (2439)
T ss_pred cc
Confidence 74
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.50 E-value=1.5e-11 Score=88.42 Aligned_cols=211 Identities=15% Similarity=0.150 Sum_probs=131.8
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
.|.+|++...+-..+++ ....++..++|||+|+.+|.+..-|-.|.+|.+.+.+....-. . ...+
T Consensus 72 ~vqvwsl~Qpew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-p-------------K~~~ 136 (447)
T KOG4497|consen 72 KVQVWSLVQPEWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-P-------------KTNV 136 (447)
T ss_pred eEEEEEeecceeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-c-------------ccCc
Confidence 37899999999999999 8888999999999998788889999999999998755322211 1 2334
Q ss_pred eEEecCCCcccCCCCCEEEEEeCC------------------------------------CeEEEEeCCCceeEeeccCC
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGD------------------------------------GVVDVINIESELNISRSKST 124 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d------------------------------------~~i~~~d~~~~~~~~~~~~~ 124 (250)
..++|+| +|++.+.++.- +.+.+||.--...+. .-.
T Consensus 137 kg~~f~~------dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe 208 (447)
T KOG4497|consen 137 KGYAFHP------DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYE 208 (447)
T ss_pred eeEEECC------CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee--eee
Confidence 5566666 55555554321 122333322111110 001
Q ss_pred CCCCccceeecccceeEEEeeeeeeccCe-----------------------------eeee------------------
Q 025649 125 TKPLKGSQSTSKVNIRDAEMEILDQSGGK-----------------------------RLHL------------------ 157 (250)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~------------------ 157 (250)
-.-.+..++|+|.+++++ +|..|...+- ..+.
T Consensus 209 ~~lG~k~v~wsP~~qfla-vGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~ 287 (447)
T KOG4497|consen 209 RGLGLKFVEWSPCNQFLA-VGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAH 287 (447)
T ss_pred eccceeEEEeccccceEE-eeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccC
Confidence 114566778888888887 6666633110 0000
Q ss_pred -----------------ecc------ccCccccEEEEEeecCCCCCcEEEEeeC--CCeEEEEecCCCcceeccccccee
Q 025649 158 -----------------DYS------VGGHTAAASCVAFSMFGERGKYLISGGN--DKLVKVWDCSRFQGVQTSINNDLL 212 (250)
Q Consensus 158 -----------------~~~------~~~h~~~v~~~~~~p~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~ 212 (250)
+.. +......+.-++|+ +|..|++|-.. -+.+-+||++.. + +
T Consensus 288 ~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs---~Ds~y~aTrnd~~PnalW~Wdlq~l---------~-l 354 (447)
T KOG4497|consen 288 IWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS---CDSTYAATRNDKYPNALWLWDLQNL---------K-L 354 (447)
T ss_pred ccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec---CCceEEeeecCCCCceEEEEechhh---------h-h
Confidence 001 11123346678898 89889888653 468999999995 2 2
Q ss_pred eeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 213 IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 213 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
........+|....|.|...+ |+.+.....+++|..
T Consensus 355 ~avLiQk~piraf~WdP~~pr-L~vctg~srLY~W~p 390 (447)
T KOG4497|consen 355 HAVLIQKHPIRAFEWDPGRPR-LVVCTGKSRLYFWAP 390 (447)
T ss_pred hhhhhhccceeEEEeCCCCce-EEEEcCCceEEEEcC
Confidence 344445568899999996555 555544556888864
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.6e-12 Score=99.50 Aligned_cols=186 Identities=15% Similarity=0.182 Sum_probs=134.3
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|+-.+++.|+.+..|. ...+.++++..++... +|++|+.+|.|..||.++...+.++....... ..........|+
T Consensus 157 vYRlNLEqGrfL~P~~-~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~--s~pg~~~~~svT 232 (703)
T KOG2321|consen 157 VYRLNLEQGRFLNPFE-TDSGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSVN--SHPGGDAAPSVT 232 (703)
T ss_pred eEEEEccccccccccc-cccccceeeeecCccc-eEEecccCceEEEecchhhhhheeeecccccC--CCccccccCcce
Confidence 4456788899999998 7779999999999888 99999999999999999888777776442100 001111223589
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccc
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 161 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (250)
++.|+. +|-.+++|..+|.+.+||+++.+.+.. .-
T Consensus 233 al~F~d------~gL~~aVGts~G~v~iyDLRa~~pl~~---------------------------------------kd 267 (703)
T KOG2321|consen 233 ALKFRD------DGLHVAVGTSTGSVLIYDLRASKPLLV---------------------------------------KD 267 (703)
T ss_pred EEEecC------CceeEEeeccCCcEEEEEcccCCceee---------------------------------------cc
Confidence 999996 799999999999999999997553321 11
Q ss_pred cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC
Q 025649 162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 241 (250)
Q Consensus 162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 241 (250)
.+..-+|..+.|.+. ..++.++|. ....++|||-.+++ .. ........++.+|+.| ++.+|+++-.+
T Consensus 268 h~~e~pi~~l~~~~~-~~q~~v~S~-Dk~~~kiWd~~~Gk---------~~-asiEpt~~lND~C~~p-~sGm~f~Ane~ 334 (703)
T KOG2321|consen 268 HGYELPIKKLDWQDT-DQQNKVVSM-DKRILKIWDECTGK---------PM-ASIEPTSDLNDFCFVP-GSGMFFTANES 334 (703)
T ss_pred cCCccceeeeccccc-CCCceEEec-chHHhhhcccccCC---------ce-eeccccCCcCceeeec-CCceEEEecCC
Confidence 233457888888731 113445544 46789999999983 32 3334455699999998 66688898888
Q ss_pred ceEEEEeC
Q 025649 242 KVVKVYSI 249 (250)
Q Consensus 242 ~~i~vw~~ 249 (250)
+.+..|=+
T Consensus 335 ~~m~~yyi 342 (703)
T KOG2321|consen 335 SKMHTYYI 342 (703)
T ss_pred CcceeEEc
Confidence 87766543
No 226
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=4.7e-11 Score=91.44 Aligned_cols=181 Identities=17% Similarity=0.203 Sum_probs=120.5
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|.+.|..+.+.+.++. .....-..+.|+|||+ ++++++.||.|.++|+.+++.+.+++.+ ....
T Consensus 18 v~viD~~t~~~~~~i~-~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~G--------------~~~~ 81 (369)
T PF02239_consen 18 VAVIDGATNKVVARIP-TGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKVG--------------GNPR 81 (369)
T ss_dssp EEEEETTT-SEEEEEE--STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-S--------------SEEE
T ss_pred EEEEECCCCeEEEEEc-CCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEecC--------------CCcc
Confidence 6789999999999998 5444445678999999 7888889999999999999999999866 5678
Q ss_pred EEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeecc
Q 025649 82 AIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS 160 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (250)
++++++ +|++++++. ..+.+.++|.++.+.+..+.... ..
T Consensus 82 ~i~~s~------DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~---------------------------------~~ 122 (369)
T PF02239_consen 82 GIAVSP------DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG---------------------------------MP 122 (369)
T ss_dssp EEEE--------TTTEEEEEEEETTEEEEEETTT--EEEEEE--E---------------------------------E-
T ss_pred eEEEcC------CCCEEEEEecCCCceeEeccccccceeeccccc---------------------------------cc
Confidence 899998 999998775 68999999999877665543320 01
Q ss_pred ccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE-e
Q 025649 161 VGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV-C 238 (250)
Q Consensus 161 ~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~ 238 (250)
.......+.++..+ +... ++++--+.+.|.+-|..... .+...............|.| ++++++. .
T Consensus 123 ~~~~~~Rv~aIv~s---~~~~~fVv~lkd~~~I~vVdy~d~~--------~~~~~~i~~g~~~~D~~~dp-dgry~~va~ 190 (369)
T PF02239_consen 123 VDGPESRVAAIVAS---PGRPEFVVNLKDTGEIWVVDYSDPK--------NLKVTTIKVGRFPHDGGFDP-DGRYFLVAA 190 (369)
T ss_dssp TTTS---EEEEEE----SSSSEEEEEETTTTEEEEEETTTSS--------CEEEEEEE--TTEEEEEE-T-TSSEEEEEE
T ss_pred ccccCCCceeEEec---CCCCEEEEEEccCCeEEEEEecccc--------ccceeeecccccccccccCc-ccceeeecc
Confidence 11134567788778 5556 45555555888888887753 23334444555677888887 8887665 4
Q ss_pred eCCceEEEEeC
Q 025649 239 DTSKVVKVYSI 249 (250)
Q Consensus 239 ~~d~~i~vw~~ 249 (250)
..+..|-++|.
T Consensus 191 ~~sn~i~viD~ 201 (369)
T PF02239_consen 191 NGSNKIAVIDT 201 (369)
T ss_dssp GGGTEEEEEET
T ss_pred cccceeEEEee
Confidence 45667777775
No 227
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.49 E-value=1.6e-11 Score=96.67 Aligned_cols=199 Identities=12% Similarity=0.036 Sum_probs=121.1
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC---CeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD---SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|.++|.. +.....+. .+...+...+|+|+|+ .|+.++.+ ..|.+||+.+++...... ...
T Consensus 172 l~~~d~~-g~~~~~l~-~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~~--------------~~~ 234 (417)
T TIGR02800 172 LQVADYD-GANPQTIT-RSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVAS--------------FPG 234 (417)
T ss_pred EEEEcCC-CCCCEEee-cCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEeec--------------CCC
Confidence 5566764 33345565 5777889999999999 66665433 579999998875433222 123
Q ss_pred ceeEEecCCCcccCCCCCEEEE-EeCCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----c-
Q 025649 79 FVHAIAIPDADMLDKTNKICVV-AKGDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----S- 150 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~- 150 (250)
.+.+++|+| +++.|+. .+.++ .|.+||+.++........ ........|+|+|+.++....... .
T Consensus 235 ~~~~~~~sp------Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 235 MNGAPAFSP------DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG--PGIDTEPSWSPDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred CccceEECC------CCCEEEEEECCCCCccEEEEECCCCCEEECCCC--CCCCCCEEECCCCCEEEEEECCCCCceEEE
Confidence 456688998 8887754 44443 588899987654433222 133456789999998874321111 1
Q ss_pred -cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC---eEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649 151 -GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 226 (250)
Q Consensus 151 -~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 226 (250)
.....+ ...+..+...+....|+ |+|++++.++.++ .|.+||+.++... ..... .......
T Consensus 307 ~d~~~~~-~~~l~~~~~~~~~~~~s---pdg~~i~~~~~~~~~~~i~~~d~~~~~~~----------~l~~~-~~~~~p~ 371 (417)
T TIGR02800 307 MDADGGE-VRRLTFRGGYNASPSWS---PDGDLIAFVHREGGGFNIAVMDLDGGGER----------VLTDT-GLDESPS 371 (417)
T ss_pred EECCCCC-EEEeecCCCCccCeEEC---CCCCEEEEEEccCCceEEEEEeCCCCCeE----------EccCC-CCCCCce
Confidence 001111 11222334456678899 8999998887765 7899998875221 11111 1233456
Q ss_pred ecCCCCCeEEEeeCC
Q 025649 227 TTPTESENLVVCDTS 241 (250)
Q Consensus 227 ~~~~~~~~l~s~~~d 241 (250)
|+| |++.|+..+.+
T Consensus 372 ~sp-dg~~l~~~~~~ 385 (417)
T TIGR02800 372 FAP-NGRMILYATTR 385 (417)
T ss_pred ECC-CCCEEEEEEeC
Confidence 887 77777765544
No 228
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.48 E-value=1.7e-12 Score=93.59 Aligned_cols=208 Identities=17% Similarity=0.234 Sum_probs=145.0
Q ss_pred eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc-CCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649 11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 89 (250)
Q Consensus 11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (250)
.++..++ ||.+.|++...-|..+ -+++.+.|.++|+|--+ .++.-..+... .|.++.++.+.+
T Consensus 15 ~ll~~~e-G~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~------------mP~~~~~~~y~~-- 78 (404)
T KOG1409|consen 15 ELLSKIE-GSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHY------------MPSPCSAMEYVS-- 78 (404)
T ss_pred hhhhhhc-CchhhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhhhh------------CCCCceEeeeec--
Confidence 3566788 9999999999989888 69999999999999754 34443333322 578899999998
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeCCCcee---EeeccCCCCCCccceeecccceeEEE-----------------------
Q 025649 90 MLDKTNKICVVAKGDGVVDVINIESELN---ISRSKSTTKPLKGSQSTSKVNIRDAE----------------------- 143 (250)
Q Consensus 90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 143 (250)
+...|++|-.+|++.-+.+..... ..+....+...+..+.|+.....+++
T Consensus 79 ----e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~ 154 (404)
T KOG1409|consen 79 ----ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF 154 (404)
T ss_pred ----cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe
Confidence 889999999999998887654211 11111112223333333222221110
Q ss_pred ----------e-eeeeec----------cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcc
Q 025649 144 ----------M-EILDQS----------GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 202 (250)
Q Consensus 144 ----------~-~~~~~~----------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~ 202 (250)
. ...++- ......++.++.+|.+.+.++.|. +....|++|..|..+.+||+-...
T Consensus 155 ~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd---~~~~~LfSg~~d~~vi~wdigg~~- 230 (404)
T KOG1409|consen 155 ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD---PGQRLLFSGASDHSVIMWDIGGRK- 230 (404)
T ss_pred eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc---CCCcEEEeccccCceEEEeccCCc-
Confidence 0 000000 012334567888999999999999 788899999999999999998763
Q ss_pred eecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 203 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.......+|...|..+...+ --+.+.+++.||.|.+||++
T Consensus 231 -------g~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 231 -------GTAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred -------ceeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEecc
Confidence 34456678999999887775 55679999999999999974
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.5e-11 Score=96.58 Aligned_cols=189 Identities=8% Similarity=0.006 Sum_probs=113.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
|.+||+.+++... +. ...+.+...+|+|||+.++++.+.+| .|.+||+.+++...... ....
T Consensus 225 i~i~dl~~G~~~~-l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~--------------~~~~ 288 (429)
T PRK03629 225 LVIQTLANGAVRQ-VA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD--------------GRSN 288 (429)
T ss_pred EEEEECCCCCeEE-cc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC--------------CCCC
Confidence 6788888775432 22 23334557899999994444445555 58889998776543322 1234
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCC-C--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee------c
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGD-G--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ------S 150 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 150 (250)
+....|+| +++.|+..+.+ + .|.++|+.++....... .........|+|||+.++.....+. .
T Consensus 289 ~~~~~wSP------DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~ 360 (429)
T PRK03629 289 NTEPTWFP------DSQNLAYTSDQAGRPQVYKVNINGGAPQRITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 360 (429)
T ss_pred cCceEECC------CCCEEEEEeCCCCCceEEEEECCCCCeEEeec--CCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence 67789998 99988776653 4 45555776654432211 1234567889999999885432211 0
Q ss_pred cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCe---EEEEecCCCcceecccccceeeeeeccCCceeEEEe
Q 025649 151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL---VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 227 (250)
Q Consensus 151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 227 (250)
+....+ ...+... .......|+ |+|++|+.++.++. +.++++... ....+..|.+.+...+|
T Consensus 361 dl~~g~-~~~Lt~~-~~~~~p~~S---pDG~~i~~~s~~~~~~~l~~~~~~G~----------~~~~l~~~~~~~~~p~W 425 (429)
T PRK03629 361 DLATGG-VQVLTDT-FLDETPSIA---PNGTMVIYSSSQGMGSVLNLVSTDGR----------FKARLPATDGQVKFPAW 425 (429)
T ss_pred ECCCCC-eEEeCCC-CCCCCceEC---CCCCEEEEEEcCCCceEEEEEECCCC----------CeEECccCCCCcCCccc
Confidence 111111 1111111 122356788 89999999887764 677777553 33445567778888888
Q ss_pred cC
Q 025649 228 TP 229 (250)
Q Consensus 228 ~~ 229 (250)
+|
T Consensus 426 sp 427 (429)
T PRK03629 426 SP 427 (429)
T ss_pred CC
Confidence 87
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1.6e-12 Score=95.00 Aligned_cols=137 Identities=13% Similarity=0.161 Sum_probs=112.0
Q ss_pred cEEEEcccceeeeeeccCC--------CCCeeeEEEcCC--CCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGH--------SSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGN 70 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h--------~~~v~~l~~~~~--~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~ 70 (250)
++|||+++.+.+..-++-. .-+++++.|.+. .. .|++++.-+.|++||.+.+ +++..+.+.
T Consensus 175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~-~fat~T~~hqvR~YDt~~qRRPV~~fd~~------- 246 (412)
T KOG3881|consen 175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNY-KFATITRYHQVRLYDTRHQRRPVAQFDFL------- 246 (412)
T ss_pred eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCc-eEEEEecceeEEEecCcccCcceeEeccc-------
Confidence 6899999887665544211 126778899886 45 8999999999999999865 466666654
Q ss_pred CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec
Q 025649 71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 150 (250)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (250)
...+.++...| +++.+++|..-+.+..||++.++...
T Consensus 247 ------E~~is~~~l~p------~gn~Iy~gn~~g~l~~FD~r~~kl~g------------------------------- 283 (412)
T KOG3881|consen 247 ------ENPISSTGLTP------SGNFIYTGNTKGQLAKFDLRGGKLLG------------------------------- 283 (412)
T ss_pred ------cCcceeeeecC------CCcEEEEecccchhheecccCceeec-------------------------------
Confidence 56789999998 99999999999999999999766432
Q ss_pred cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649 151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~ 200 (250)
..+.+-.+.|.++..+ |.++++++++-|+.+||+|+++.
T Consensus 284 --------~~~kg~tGsirsih~h---p~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 284 --------CGLKGITGSIRSIHCH---PTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred --------cccCCccCCcceEEEc---CCCceEEeeccceeEEEeecccc
Confidence 2467778899999999 88899999999999999999995
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.48 E-value=5.6e-12 Score=89.94 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=82.8
Q ss_pred cEEEEccccee--eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCe-EEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK-LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~--~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|+|-|+...+. ...+. +|.+.|.|++.+.+|. ++||+|..|+ |||||..+|..+..++.+. .+.
T Consensus 161 vQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~-----------d~A 227 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIIN-AHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGV-----------DRA 227 (346)
T ss_pred EEEEEhhhcCcCCceEEE-cccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCC-----------chh
Confidence 56777765444 35677 9999999999999999 9999999998 6999999999999998662 467
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 115 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 115 (250)
.|++++|+| +..+|++++..|+++++.++..
T Consensus 228 ~iy~iaFSp------~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 228 DIYCIAFSP------NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred eEEEEEeCC------CccEEEEEcCCCeEEEEEeecC
Confidence 899999999 9999999999999999999863
No 232
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=3.3e-12 Score=103.80 Aligned_cols=171 Identities=14% Similarity=0.186 Sum_probs=129.2
Q ss_pred cEEEEcccceeeeeeccCCCCCee-----eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICS-----SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~-----~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
+.+||...+.....+. +..... -+-++++.- ++++|+.-+.|.+|+..... ......+ |
T Consensus 111 ~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~~dn-~p~~l~G------------H 174 (967)
T KOG0974|consen 111 LLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPHEDN-KPIRLKG------------H 174 (967)
T ss_pred EEEEecccCceehhcC--CCceEEEEeEEEEeccCcEE-EEEeccccccEEEEeccccC-Ccceecc------------c
Confidence 4577877777776666 332211 222345544 89999999999999987222 1222223 7
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeee
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH 156 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (250)
...+..+.++. +|+++++.+.|.++|+|++++.+...
T Consensus 175 eG~iF~i~~s~------dg~~i~s~SdDRsiRlW~i~s~~~~~------------------------------------- 211 (967)
T KOG0974|consen 175 EGSIFSIVTSL------DGRYIASVSDDRSIRLWPIDSREVLG------------------------------------- 211 (967)
T ss_pred CCceEEEEEcc------CCcEEEEEecCcceeeeecccccccC-------------------------------------
Confidence 89999999998 99999999999999999999755221
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC-ceeEEEecCCCCCeE
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENL 235 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l 235 (250)
...-+|...|..+.|. |+ .++|++.|.+.++|+... ..+..+.+|.. .++.++..+ +...+
T Consensus 212 --~~~fgHsaRvw~~~~~---~n--~i~t~gedctcrvW~~~~----------~~l~~y~~h~g~~iw~~~~~~-~~~~~ 273 (967)
T KOG0974|consen 212 --CTGFGHSARVWACCFL---PN--RIITVGEDCTCRVWGVNG----------TQLEVYDEHSGKGIWKIAVPI-GVIIK 273 (967)
T ss_pred --cccccccceeEEEEec---cc--eeEEeccceEEEEEeccc----------ceehhhhhhhhcceeEEEEcC-CceEE
Confidence 1345799999999999 65 999999999999997766 34456777765 588888876 66678
Q ss_pred EEeeCCceEEEEeC
Q 025649 236 VVCDTSKVVKVYSI 249 (250)
Q Consensus 236 ~s~~~d~~i~vw~~ 249 (250)
+|++.|+.+++|++
T Consensus 274 vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 274 VTGGNDSTLKLWDL 287 (967)
T ss_pred EeeccCcchhhhhh
Confidence 99999999999986
No 233
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=1e-12 Score=106.65 Aligned_cols=133 Identities=17% Similarity=0.147 Sum_probs=108.1
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|.+|+....+.-..+. ||.+.|..+.++.+|. +++++|+|.++|+|++.+.+.....-++ |+..+.
T Consensus 157 iivW~~~~dn~p~~l~-GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fg------------HsaRvw 222 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLK-GHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFG------------HSARVW 222 (967)
T ss_pred EEEEeccccCCcceec-ccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCccccc------------ccceeE
Confidence 5688876333333678 9999999999999999 9999999999999999998877655455 899999
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccc
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 161 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (250)
.+.+.| + ++++++.|.+.++|+.+..+ +..+
T Consensus 223 ~~~~~~------n--~i~t~gedctcrvW~~~~~~-----------------------------------------l~~y 253 (967)
T KOG0974|consen 223 ACCFLP------N--RIITVGEDCTCRVWGVNGTQ-----------------------------------------LEVY 253 (967)
T ss_pred EEEecc------c--eeEEeccceEEEEEecccce-----------------------------------------ehhh
Confidence 999997 5 99999999999999765322 1244
Q ss_pred cCcc-ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649 162 GGHT-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 162 ~~h~-~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~ 200 (250)
.+|. ..|..++.. ++...++|++.|+.+++||+...
T Consensus 254 ~~h~g~~iw~~~~~---~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 254 DEHSGKGIWKIAVP---IGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hhhhhcceeEEEEc---CCceEEEeeccCcchhhhhhhcc
Confidence 5553 458888888 77788999999999999998654
No 234
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=9.5e-12 Score=95.45 Aligned_cols=202 Identities=12% Similarity=0.101 Sum_probs=126.5
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
.|...-+.|..+|||+.+++||.....|++||+.+......-.+. ...|.-...+. |-..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD-------------ae~V~feiLsD------D~SK~ 109 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD-------------AEVVDFEILSD------DYSKS 109 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc-------------ccceeEEEecc------chhhh
Confidence 477888999999999988899999999999999765432221111 22333333343 45555
Q ss_pred EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-eeec--cCeeeeeeccccCccccEEEEEeec
Q 025649 99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-LDQS--GGKRLHLDYSVGGHTAAASCVAFSM 175 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~h~~~v~~~~~~p 175 (250)
+.-..|.+|.+...-.......+. ..-..++++.-.--+...+. .+.. ..+++..+..+....+.++++..+
T Consensus 110 v~L~~DR~IefHak~G~hy~~RIP----~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in- 184 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAKYGRHYRTRIP----KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSIN- 184 (703)
T ss_pred eEeecCceeeehhhcCeeeeeecC----cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeec-
Confidence 556677777665433211111111 12233444332222221221 1111 234455566777777889999999
Q ss_pred CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC-----ceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 176 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-----KVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 176 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+...+|++|+.||.|-.||.+......+. ........|.+ .|+++.|.. +|-.+++|..+|.+.|||++
T Consensus 185 --~~hgLla~Gt~~g~VEfwDpR~ksrv~~l---~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 185 --EEHGLLACGTEDGVVEFWDPRDKSRVGTL---DAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred --CccceEEecccCceEEEecchhhhhheee---ecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcc
Confidence 77789999999999999999987544221 11111122333 499999985 68889999999999999985
No 235
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.45 E-value=3.8e-11 Score=84.94 Aligned_cols=189 Identities=11% Similarity=0.131 Sum_probs=125.8
Q ss_pred cEEEEcccceeee--eeccCCCCCeeeEEEcC---CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649 2 WQIIDIRQHCLYK--SLRAGHSSICSSVQFIP---WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 2 i~iwd~~~~~~~~--~l~~~h~~~v~~l~~~~---~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
+.+++++..+... .++..-++.+..+.|.- +|...++-+..+|.|.++..........++ +. ......
T Consensus 48 l~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~-~l------s~~ki~ 120 (339)
T KOG0280|consen 48 LHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLR-GL------SSKKIS 120 (339)
T ss_pred eEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeec-cc------chhhhh
Confidence 4566766555433 22212345567777753 333356777788999998876544333332 10 000001
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeee
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH 156 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (250)
.....++.|++ .+..++++..+|.+.+-+.... ..+
T Consensus 121 ~~~~lslD~~~------~~~~i~vs~s~G~~~~v~~t~~--------------------------------------~le 156 (339)
T KOG0280|consen 121 VVEALSLDIST------SGTKIFVSDSRGSISGVYETEM--------------------------------------VLE 156 (339)
T ss_pred heeeeEEEeec------cCceEEEEcCCCcEEEEeccee--------------------------------------eee
Confidence 11245677776 7777888888888774433311 123
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
..+..+.|.-+++...|+-.. .+++.+|+.|+.+..||++.... ......+-|...|.++.-+|+.+.+|+
T Consensus 157 ~vq~wk~He~E~Wta~f~~~~--pnlvytGgDD~~l~~~D~R~p~~-------~i~~n~kvH~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 157 KVQTWKVHEFEAWTAKFSDKE--PNLVYTGGDDGSLSCWDIRIPKT-------FIWHNSKVHTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred ecccccccceeeeeeecccCC--CceEEecCCCceEEEEEecCCcc-------eeeecceeeecceEEEecCCCCCceEE
Confidence 345788999999999998533 37899999999999999994321 333446789999999999999999999
Q ss_pred EeeCCceEEEEeCC
Q 025649 237 VCDTSKVVKVYSIS 250 (250)
Q Consensus 237 s~~~d~~i~vw~~~ 250 (250)
||+.|-.|++||.+
T Consensus 228 TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 228 TGSYDECIRVLDTR 241 (339)
T ss_pred Eeccccceeeeehh
Confidence 99999999999975
No 236
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.1e-10 Score=92.22 Aligned_cols=207 Identities=14% Similarity=0.022 Sum_probs=118.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC---CeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD---SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|.++|.+.+. .+.+. .+...+...+|+|+|+ .|+..+.+ ..|.+||+.+++...... .+.
T Consensus 181 l~~~d~~g~~-~~~l~-~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~~l~~--------------~~g 243 (430)
T PRK00178 181 LQRSDYDGAR-AVTLL-QSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRREQITN--------------FEG 243 (430)
T ss_pred EEEECCCCCC-ceEEe-cCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEEEccC--------------CCC
Confidence 4566765443 34555 5778899999999998 56554433 468999998876533222 123
Q ss_pred ceeEEecCCCcccCCCCCEEEE-EeCCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----ec-
Q 025649 79 FVHAIAIPDADMLDKTNKICVV-AKGDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QS- 150 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~- 150 (250)
......|+| +|+.|+. ...++ .|.++|+.++....... .........|+|||+.++.....+ ..
T Consensus 244 ~~~~~~~Sp------DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~--~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 244 LNGAPAWSP------DGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN--HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYK 315 (430)
T ss_pred CcCCeEECC------CCCEEEEEEccCCCceEEEEECCCCCeEEccc--CCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 345688998 8988764 44444 68888998876543222 223456678999999877432111 11
Q ss_pred -cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC-C--eEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649 151 -GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-K--LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 226 (250)
Q Consensus 151 -~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 226 (250)
.....+ ...+...........|+ |+|++++..+.+ + .|.++|+.++... .+ . .........
T Consensus 316 ~d~~~g~-~~~lt~~~~~~~~~~~S---pdg~~i~~~~~~~~~~~l~~~dl~tg~~~-------~l--t--~~~~~~~p~ 380 (430)
T PRK00178 316 VNVNGGR-AERVTFVGNYNARPRLS---ADGKTLVMVHRQDGNFHVAAQDLQRGSVR-------IL--T--DTSLDESPS 380 (430)
T ss_pred EECCCCC-EEEeecCCCCccceEEC---CCCCEEEEEEccCCceEEEEEECCCCCEE-------Ec--c--CCCCCCCce
Confidence 000000 01111111222346788 899988876643 3 5888999886321 11 1 111222447
Q ss_pred ecCCCCCeEEEeeC-Cc--eEEEEeC
Q 025649 227 TTPTESENLVVCDT-SK--VVKVYSI 249 (250)
Q Consensus 227 ~~~~~~~~l~s~~~-d~--~i~vw~~ 249 (250)
|+| ||+.++..+. ++ .|.++++
T Consensus 381 ~sp-dg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 381 VAP-NGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred ECC-CCCEEEEEEecCCceEEEEEEC
Confidence 887 7777766543 33 3444443
No 237
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.44 E-value=1.1e-12 Score=91.07 Aligned_cols=208 Identities=13% Similarity=0.125 Sum_probs=122.7
Q ss_pred CCCC-CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecC----CCcccCC
Q 025649 19 GHSS-ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIP----DADMLDK 93 (250)
Q Consensus 19 ~h~~-~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~ 93 (250)
+|.+ .|+.+.++.+. .|+++..++.+.....-++.+...++... ..++.++++.+ |-....-
T Consensus 33 ~~~d~~~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~~~rt~-----------~i~~~~~~a~~sep~p~~~~s~ 99 (319)
T KOG4714|consen 33 QHADVKLSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISLWERDD-----------GIDPFKVLAKNSEIDPNDACTM 99 (319)
T ss_pred cccceEEEEeechhhh--eeecccchhheeeeccceEEEechhhccc-----------CcCceeeeeccCCCCCcccccc
Confidence 4443 35566666554 57788777777766655444433332110 00111112111 1111112
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE--eeeeeecc---CeeeeeeccccC---cc
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE--MEILDQSG---GKRLHLDYSVGG---HT 165 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~---h~ 165 (250)
.++.+++++.||.+.+++.+.................+..+...+..+.+ .+.++..+ ....+++..+.. ..
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 46789999999999999988632222111111112222333334444443 22222221 122222222221 12
Q ss_pred ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649 166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 245 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 245 (250)
..|++++-+| ...+.+++|+.||.+.+||.++.. .+...+..|+.+++.+-|+|.++..|++++.||.+.
T Consensus 180 ~~v~~l~~hp--~qq~~v~cgt~dg~~~l~d~rn~~--------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw 249 (319)
T KOG4714|consen 180 DAVTALCSHP--AQQHLVCCGTDDGIVGLWDARNVA--------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLW 249 (319)
T ss_pred ccchhhhCCc--ccccEEEEecCCCeEEEEEccccc--------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEE
Confidence 3488888885 345678889999999999999973 455677899999999999999999999999999999
Q ss_pred EEeC
Q 025649 246 VYSI 249 (250)
Q Consensus 246 vw~~ 249 (250)
.||-
T Consensus 250 ~wda 253 (319)
T KOG4714|consen 250 HWDA 253 (319)
T ss_pred EEcC
Confidence 9985
No 238
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.5e-12 Score=99.38 Aligned_cols=132 Identities=16% Similarity=0.175 Sum_probs=104.9
Q ss_pred cccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC
Q 025649 73 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG 152 (250)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (250)
+..|.+-|.++.|+. +|.+|++|+.|-.+.|||.-..+.+.
T Consensus 46 L~GH~GCVN~LeWn~------dG~lL~SGSDD~r~ivWd~~~~Kllh--------------------------------- 86 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNA------DGELLASGSDDTRLIVWDPFEYKLLH--------------------------------- 86 (758)
T ss_pred hccccceecceeecC------CCCEEeecCCcceEEeecchhcceee---------------------------------
Confidence 344889999999998 99999999999999999987433221
Q ss_pred eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccc-ceeeeeeccCCceeEEEecCCC
Q 025649 153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN-DLLIKNINLNKKVNWLCTTPTE 231 (250)
Q Consensus 153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 231 (250)
..-.+|...|.++.|-|.. +.+++++|+.|..|++||+...+.-...+.. +.......|...|..++..|..
T Consensus 87 ------sI~TgHtaNIFsvKFvP~t-nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~ 159 (758)
T KOG1310|consen 87 ------SISTGHTANIFSVKFVPYT-NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG 159 (758)
T ss_pred ------eeecccccceeEEeeeccC-CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC
Confidence 1225799999999999753 4578999999999999999874433222221 3445567899999999999866
Q ss_pred CCeEEEeeCCceEEEEeCC
Q 025649 232 SENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 232 ~~~l~s~~~d~~i~vw~~~ 250 (250)
+..+.+++.||+|+-||++
T Consensus 160 PhtfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 160 PHTFWSASEDGTIRQYDIR 178 (758)
T ss_pred CceEEEecCCcceeeeccc
Confidence 6889999999999999985
No 239
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.42 E-value=3.5e-11 Score=92.42 Aligned_cols=196 Identities=13% Similarity=0.082 Sum_probs=139.1
Q ss_pred EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc--------CCCCCEEEEEeCCCeE
Q 025649 36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML--------DKTNKICVVAKGDGVV 107 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~l~~~~~d~~i 107 (250)
++|....||.+++||..+++....+.... .-.+.+....+...+..+|..+. ..+...++-|...|.|
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~----~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIA----SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccch----hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 89999999999999999888766664220 01111112222233334442110 1245678888899999
Q ss_pred EEEeCCCceeEeecc-CCCCCCccceeecccceeEEEee---eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEE
Q 025649 108 DVINIESELNISRSK-STTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL 183 (250)
Q Consensus 108 ~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l 183 (250)
-+|+...++....+. ..+...+.++.++.+-..+.+++ ....+.......++.+.+....+.++.++ |+|..+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is---~D~~~l 159 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCIS---PDGKIL 159 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEc---CCCCEE
Confidence 999999999887776 55668888888887777776422 23334455566667777888889999999 899999
Q ss_pred EEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCC----CCCeEEE-eeCCceEEEEeC
Q 025649 184 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT----ESENLVV-CDTSKVVKVYSI 249 (250)
Q Consensus 184 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~s-~~~d~~i~vw~~ 249 (250)
++++ +.|++||++++ +.+..+.+|.++|.++.|... .|.++++ ...+.-+.+|-+
T Consensus 160 ~~as--~~ik~~~~~~k---------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETK---------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred Eecc--ceEEEEEccCc---------eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 9997 68999999998 888999999999999988752 1556655 445666777743
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.41 E-value=1.8e-10 Score=88.29 Aligned_cols=221 Identities=13% Similarity=0.120 Sum_probs=123.6
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|.++|+.+++.+++++ ... ...++++++||+.+++++..++.+.++|.++.+.++.+..+...... ....+
T Consensus 59 ~vsviD~~~~~~v~~i~-~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~------~~~Rv 130 (369)
T PF02239_consen 59 TVSVIDLATGKVVATIK-VGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG------PESRV 130 (369)
T ss_dssp EEEEEETTSSSEEEEEE--SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT------S---E
T ss_pred eEEEEECCcccEEEEEe-cCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc------cCCCc
Confidence 37899999999999999 433 45789999999944455567899999999999998888644110000 23456
Q ss_pred eEEecCCCcccCCCCCEEE-EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE-------eeeeeeccC
Q 025649 81 HAIAIPDADMLDKTNKICV-VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE-------MEILDQSGG 152 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 152 (250)
.++..+| ....++ +.-..+.|-+.|......+...............|+|++++++. ++..|....
T Consensus 131 ~aIv~s~------~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 131 AAIVASP------GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EEEEE-S------SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred eeEEecC------CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence 6776676 555444 44455888888877654433222222356667888999887753 111121110
Q ss_pred e----------------------------------------------------eeeeeccccCccccEEEEEeecCCCCC
Q 025649 153 K----------------------------------------------------RLHLDYSVGGHTAAASCVAFSMFGERG 180 (250)
Q Consensus 153 ~----------------------------------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~ 180 (250)
. ..+.++++.....+ .-+..+ |++
T Consensus 205 k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th---P~s 280 (369)
T PF02239_consen 205 KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH---PDS 280 (369)
T ss_dssp EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-----TT-
T ss_pred eEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC---CCC
Confidence 0 00111122222222 445557 889
Q ss_pred cEEEEe----eCCCeEEEEecCCCcceecccccceeeeee-ccCCceeEEEecCCCCCeEEEee--CCceEEEEeC
Q 025649 181 KYLISG----GNDKLVKVWDCSRFQGVQTSINNDLLIKNI-NLNKKVNWLCTTPTESENLVVCD--TSKVVKVYSI 249 (250)
Q Consensus 181 ~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~--~d~~i~vw~~ 249 (250)
+++... ...+.|.++|.++. +....+. .-...+..+.|++ +|+.+..+. .++.|.+||.
T Consensus 281 ~~vwvd~~~~~~~~~v~viD~~tl---------~~~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 281 RYVWVDTFLNPDADTVQVIDKKTL---------KVVKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp SEEEEE-TT-SSHT-EEEEECCGT---------EEEE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEET
T ss_pred ccEEeeccCCCCCceEEEEECcCc---------ceeEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEEC
Confidence 998887 44589999999997 3333332 2223588899997 888665544 3347999985
No 241
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=3.9e-10 Score=88.45 Aligned_cols=211 Identities=13% Similarity=0.033 Sum_probs=118.5
Q ss_pred EEEEcccceeeeeeccCCCCCeeeEEEcCCCCeE-E-EEecCC--CeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE-V-ISGGLD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 3 ~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~-l-~s~s~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
.+.|...+ ..+.+. .....+..-+|+|||+.+ + ++...+ ..|.+.++.+++....... +.
T Consensus 168 ~~~d~dG~-~~~~lt-~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--------------~g 231 (428)
T PRK01029 168 WSVDYDGQ-NLRPLT-QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--------------QG 231 (428)
T ss_pred EEEcCCCC-CceEcc-cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--------------CC
Confidence 34454333 334455 445566778999999732 2 244333 4577778877764433331 23
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeC-----CCeEEEEeCCCce--eEeeccCCCCCCccceeecccceeEEEeeeeee--
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKG-----DGVVDVINIESEL--NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ-- 149 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 149 (250)
.....+|+| ||+.|+..+. +-.+..|++..+. ....+............|+|||+.++.....+.
T Consensus 232 ~~~~p~wSP------DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~ 305 (428)
T PRK01029 232 NQLMPTFSP------RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRP 305 (428)
T ss_pred CccceEECC------CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCc
Confidence 345678998 9988876553 2234457766531 111222111134467899999998874332111
Q ss_pred --ccC---eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC---CeEEEEecCCCcceecccccceeeeeeccCCc
Q 025649 150 --SGG---KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 221 (250)
Q Consensus 150 --~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (250)
+.. ........+..+...+....|+ |+|+.|+..+.+ ..|.+||+.+++.. .+......
T Consensus 306 ~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS---PDG~~Laf~~~~~g~~~I~v~dl~~g~~~----------~Lt~~~~~ 372 (428)
T PRK01029 306 RIYIMQIDPEGQSPRLLTKKYRNSSCPAWS---PDGKKIAFCSVIKGVRQICVYDLATGRDY----------QLTTSPEN 372 (428)
T ss_pred eEEEEECcccccceEEeccCCCCccceeEC---CCCCEEEEEEcCCCCcEEEEEECCCCCeE----------EccCCCCC
Confidence 110 0001112233334456778899 899988876543 47999999887321 22222234
Q ss_pred eeEEEecCCCCCeEEE-eeC--CceEEEEeC
Q 025649 222 VNWLCTTPTESENLVV-CDT--SKVVKVYSI 249 (250)
Q Consensus 222 v~~~~~~~~~~~~l~s-~~~--d~~i~vw~~ 249 (250)
+....|+| ||+.|+. +.. ...|.++|+
T Consensus 373 ~~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 373 KESPSWAI-DSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred ccceEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 56688987 7877664 332 346777775
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=3.6e-09 Score=81.01 Aligned_cols=210 Identities=15% Similarity=0.160 Sum_probs=126.1
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccc---eecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKI---VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 96 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (250)
......++++|+++.++++.-.+|.|.++++.. +..... +..... ......-.....+++.++| +++
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~---g~~~~rq~~~h~H~v~~~p------dg~ 156 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS---GPNPDRQEGPHPHQVVFSP------DGR 156 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE---ESSTTTTSSTCEEEEEE-T------TSS
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC---CCcccccccccceeEEECC------CCC
Confidence 344568999999994444445689999999986 332222 211000 0000001235678999999 999
Q ss_pred EEEEEe-CCCeEEEEeCCCce--e--EeeccCCCCCCccceeecccceeEEEee-------eeeec-cCeeeee---ecc
Q 025649 97 ICVVAK-GDGVVDVINIESEL--N--ISRSKSTTKPLKGSQSTSKVNIRDAEME-------ILDQS-GGKRLHL---DYS 160 (250)
Q Consensus 97 ~l~~~~-~d~~i~~~d~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~---~~~ 160 (250)
++++.. ....|.+|++.... . ...+..+.......+.|+|+++++..+. .++.. .....+. +..
T Consensus 157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 157 FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence 887764 45689999997654 2 2334455667889999999999887422 22222 0111222 222
Q ss_pred ccC---ccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCC-cceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 161 VGG---HTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRF-QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 161 ~~~---h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
+.. .......++++ |+|++|.++. .++.|.+|++... ..+ ..+............++++| +|++|
T Consensus 237 ~~~~~~~~~~~~~i~is---pdg~~lyvsnr~~~sI~vf~~d~~~g~l------~~~~~~~~~G~~Pr~~~~s~-~g~~l 306 (345)
T PF10282_consen 237 LPEGFTGENAPAEIAIS---PDGRFLYVSNRGSNSISVFDLDPATGTL------TLVQTVPTGGKFPRHFAFSP-DGRYL 306 (345)
T ss_dssp CETTSCSSSSEEEEEE----TTSSEEEEEECTTTEEEEEEECTTTTTE------EEEEEEEESSSSEEEEEE-T-TSSEE
T ss_pred ccccccccCCceeEEEe---cCCCEEEEEeccCCEEEEEEEecCCCce------EEEEEEeCCCCCccEEEEeC-CCCEE
Confidence 211 12257889999 8999887765 4779999999432 111 23333333345588999997 88888
Q ss_pred EEee-CCceEEEEeC
Q 025649 236 VVCD-TSKVVKVYSI 249 (250)
Q Consensus 236 ~s~~-~d~~i~vw~~ 249 (250)
+++. .++.|.+|++
T Consensus 307 ~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 307 YVANQDSNTVSVFDI 321 (345)
T ss_dssp EEEETTTTEEEEEEE
T ss_pred EEEecCCCeEEEEEE
Confidence 8766 6778999875
No 243
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.36 E-value=3.7e-10 Score=94.00 Aligned_cols=235 Identities=10% Similarity=-0.047 Sum_probs=141.4
Q ss_pred CcEEEEcccc-------eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccc--eecCCCCCCCCC
Q 025649 1 MWQIIDIRQH-------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI--VNFGLPENNGNA 71 (250)
Q Consensus 1 ti~iwd~~~~-------~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~ 71 (250)
||++||+..- +...++. --.+.+.++...+.+. .+|.++.||.|++.++......+. .....+.
T Consensus 1072 tVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n----- 1144 (1431)
T KOG1240|consen 1072 TVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPN----- 1144 (1431)
T ss_pred eEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCC-eEEEEcCCCeEEEEEccccccccceeeeeeccc-----
Confidence 6999998631 2223343 3567899999999999 899999999999999875211111 0000000
Q ss_pred CcccCCCceeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCCceeEeeccCCC-CCCccceeecccceeEEE---eee
Q 025649 72 GQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTT-KPLKGSQSTSKVNIRDAE---MEI 146 (250)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~ 146 (250)
.......+..-++.. ..+. .++.+...+.|..||++........+... .+.+++++.+|.+..++. .|.
T Consensus 1145 -~~~~g~vv~m~a~~~-----~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1145 -LKKDGVVVSMHAFTA-----IVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred -ccCCCceEEeecccc-----cccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCce
Confidence 000111223333332 1334 78888889999999999877665555433 378999999999998873 222
Q ss_pred eeeccCeeeeeeccc-cCccccEEEEEeecCCCCCcEEEEee--CCCeEEEEecCCCcceeccccc---ceeeeee----
Q 025649 147 LDQSGGKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQTSINN---DLLIKNI---- 216 (250)
Q Consensus 147 ~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~---- 216 (250)
...|+.+-..++... ..+..++..+..+|..+.....++++ ..+-|.+|++.++.+....... ..+....
T Consensus 1219 l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~ 1298 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSND 1298 (1431)
T ss_pred EEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhccccc
Confidence 333443332233332 23457888888887666545555544 4778999999998655321111 1111000
Q ss_pred ---ccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 217 ---NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 217 ---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.+.-.....++.. .+.++++|+.|..|+.||.
T Consensus 1299 ~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1299 ARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred CCCCCcccceeeeccc-CCceeeecCCccceeeccC
Confidence 1111222223332 4457899999999999996
No 244
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.7e-10 Score=91.19 Aligned_cols=172 Identities=10% Similarity=-0.036 Sum_probs=106.1
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCe--EEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK--LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
.|.+||+.+++.. .+. .+.+.+...+|+|+|+.++++.+.++. |.+||+.+++... +.. +..
T Consensus 227 ~i~~~dl~~g~~~-~l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~-------------~~~ 290 (435)
T PRK05137 227 RVYLLDLETGQRE-LVG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTD-------------SPA 290 (435)
T ss_pred EEEEEECCCCcEE-Eee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccC-------------CCC
Confidence 3789999887653 455 567778899999999855556666665 6677887765433 321 233
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeC-C--CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----ecc
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKG-D--GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSG 151 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 151 (250)
......|+| +++.|+..+. + ..|.++|+.++........ ........|+|+|+.++...... ...
T Consensus 291 ~~~~~~~sp------DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~ 362 (435)
T PRK05137 291 IDTSPSYSP------DGSQIVFESDRSGSPQLYVMNADGSNPRRISFG--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGV 362 (435)
T ss_pred ccCceeEcC------CCCEEEEEECCCCCCeEEEEECCCCCeEEeecC--CCcccCeEECCCCCEEEEEEcCCCceEEEE
Confidence 456678998 9998877663 3 3688889877654332222 23456688999999998533111 100
Q ss_pred Ce-eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC------CeEEEEecCCC
Q 025649 152 GK-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND------KLVKVWDCSRF 200 (250)
Q Consensus 152 ~~-~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d------~~i~iwd~~~~ 200 (250)
.. .......+. ....+....|+ |+|+.|+..+.+ ..+.++|+..+
T Consensus 363 ~d~~~~~~~~lt-~~~~~~~p~~s---pDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 363 MKPDGSGERILT-SGFLVEGPTWA---PNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EECCCCceEecc-CCCCCCCCeEC---CCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 00 000011121 12245678899 899988765442 25778888664
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.7e-10 Score=88.37 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=82.4
Q ss_pred CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc----CeeeeeeccccCccccEEEEEeecCCCCC
Q 025649 105 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERG 180 (250)
Q Consensus 105 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 180 (250)
.++++++++.......+ ...++|.++.|+|+++.++.+-..-... .....++..+ ..++=+++-|+ |.|
T Consensus 251 q~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df--~egpRN~~~fn---p~g 323 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF--PEGPRNTAFFN---PHG 323 (566)
T ss_pred ceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC--CCCCccceEEC---CCC
Confidence 46777777643333333 3348999999999999888532221111 1122233333 34566788999 899
Q ss_pred cEEEEeeC---CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC------CceEEEEeC
Q 025649 181 KYLISGGN---DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT------SKVVKVYSI 249 (250)
Q Consensus 181 ~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------d~~i~vw~~ 249 (250)
++++.++- -|.|-|||+.+. +++....... -+-..|+| ||++|+|+.. |+.++||++
T Consensus 324 ~ii~lAGFGNL~G~mEvwDv~n~---------K~i~~~~a~~--tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDMEVWDVPNR---------KLIAKFKAAN--TTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred CEEEEeecCCCCCceEEEeccch---------hhccccccCC--ceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe
Confidence 98887653 579999999996 4433333332 33468998 9999998774 678999986
No 246
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.5e-10 Score=91.29 Aligned_cols=189 Identities=8% Similarity=0.019 Sum_probs=111.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
|.+||+.+++.. .+. .+.+...+.+|+|+|+.++++.+.+| .|.+||+.+++...... +...
T Consensus 230 l~~~dl~~g~~~-~l~-~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~--------------~~~~ 293 (433)
T PRK04922 230 IYVQDLATGQRE-LVA-SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN--------------HFGI 293 (433)
T ss_pred EEEEECCCCCEE-Eec-cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc--------------CCCC
Confidence 678999877653 333 34555568899999984445666555 59999998776433221 1233
Q ss_pred eeEEecCCCcccCCCCCEEEEEeC-CCe--EEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----e--c
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKG-DGV--VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----Q--S 150 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~ 150 (250)
....+|+| +++.|+..+. +|. |.++|+.+++....... .......+|+|+|+.++.....+ . .
T Consensus 294 ~~~~~~sp------DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~ 365 (433)
T PRK04922 294 DTEPTWAP------DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSGGQYRIAVM 365 (433)
T ss_pred ccceEECC------CCCEEEEEECCCCCceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence 45678998 9998877663 444 66677766654322211 13345689999999988432211 1 1
Q ss_pred cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC---CeEEEEecCCCcceecccccceeeeeeccCCceeEEEe
Q 025649 151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 227 (250)
Q Consensus 151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 227 (250)
+....+. ..+. +........|+ |+|++++..+.+ +.|.++++... ....+..+.+.+...+|
T Consensus 366 d~~~g~~-~~Lt-~~~~~~~p~~s---pdG~~i~~~s~~~g~~~L~~~~~~g~----------~~~~l~~~~g~~~~p~w 430 (433)
T PRK04922 366 DLSTGSV-RTLT-PGSLDESPSFA---PNGSMVLYATREGGRGVLAAVSTDGR----------VRQRLVSADGEVREPAW 430 (433)
T ss_pred ECCCCCe-EECC-CCCCCCCceEC---CCCCEEEEEEecCCceEEEEEECCCC----------ceEEcccCCCCCCCCcc
Confidence 1111111 1222 22234456888 899988776653 36778888653 22233344555666677
Q ss_pred cC
Q 025649 228 TP 229 (250)
Q Consensus 228 ~~ 229 (250)
+|
T Consensus 431 sp 432 (433)
T PRK04922 431 SP 432 (433)
T ss_pred CC
Confidence 65
No 247
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=1e-08 Score=77.26 Aligned_cols=220 Identities=11% Similarity=0.017 Sum_probs=133.6
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec---------CCCeEEEEEccCCCCccceecCCCCCCCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG---------LDSKLVMWDFSKGRPNKIVNFGLPENNGNA 71 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 71 (250)
+|.+.|..+++.+..+..|.... .+ ++||++.+.++.+ .+..|.+||+.+.+.+..+..+... ..
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p---~~ 101 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP---RF 101 (352)
T ss_pred eEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc---hh
Confidence 47899999999999998333333 35 9999995555556 6889999999999999888755100 00
Q ss_pred CcccCCCceeEEecCCCcccCCCCCEEEEEe-C-CCeEEEEeCCCceeEeeccCCCCCCc------cceeecc-------
Q 025649 72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAK-G-DGVVDVINIESELNISRSKSTTKPLK------GSQSTSK------- 136 (250)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~-d~~i~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~------- 136 (250)
. ....-..++++| +|++|++.. . ++.|.+.|+.+++.+.++..+....+ ..+..+.
T Consensus 102 ~---~~~~~~~~~ls~------dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v 172 (352)
T TIGR02658 102 L---VGTYPWMTSLTP------DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKV 172 (352)
T ss_pred h---ccCccceEEECC------CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEE
Confidence 0 012234678888 999998775 3 78999999999876665543321111 0111122
Q ss_pred --------------------------------cceeEEE-----eeeeeecc--CeeeeeeccccC-------ccccEEE
Q 025649 137 --------------------------------VNIRDAE-----MEILDQSG--GKRLHLDYSVGG-------HTAAASC 170 (250)
Q Consensus 137 --------------------------------~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~-------h~~~v~~ 170 (250)
+|+++.. +...|... ....+....+.. ..+.+.-
T Consensus 173 ~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ 252 (352)
T TIGR02658 173 GYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ 252 (352)
T ss_pred EecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence 3333321 11111100 001111111110 1223344
Q ss_pred EEeecCCCCCcEEEEee----------CCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC-eEEEee
Q 025649 171 VAFSMFGERGKYLISGG----------NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCD 239 (250)
Q Consensus 171 ~~~~p~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~ 239 (250)
++++ ++++.+.... ..+.|.++|.+++ +.+.. ..-...+..++++| |++ +|++..
T Consensus 253 ia~~---~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------kvi~~-i~vG~~~~~iavS~-Dgkp~lyvtn 318 (352)
T TIGR02658 253 VAYH---RARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------KRLRK-IELGHEIDSINVSQ-DAKPLLYALS 318 (352)
T ss_pred EEEc---CCCCEEEEEecCCccccccCCCCEEEEEECCCC---------eEEEE-EeCCCceeeEEECC-CCCeEEEEeC
Confidence 8888 7877776632 1257999999997 33333 23456889999998 788 777655
Q ss_pred -CCceEEEEeC
Q 025649 240 -TSKVVKVYSI 249 (250)
Q Consensus 240 -~d~~i~vw~~ 249 (250)
.++.|.+.|.
T Consensus 319 ~~s~~VsViD~ 329 (352)
T TIGR02658 319 TGDKTLYIFDA 329 (352)
T ss_pred CCCCcEEEEEC
Confidence 6788999986
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1.1e-09 Score=86.50 Aligned_cols=207 Identities=11% Similarity=0.003 Sum_probs=113.7
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC-CC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL-DS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|.++|..... .+.+. .+...+.+..|+|||+ .|+..+. ++ .|.+||+.+++....... +.
T Consensus 200 l~i~d~dG~~-~~~l~-~~~~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~tg~~~~lt~~--------------~g 262 (448)
T PRK04792 200 LMIADYDGYN-EQMLL-RSPEPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYTQVREKVTSF--------------PG 262 (448)
T ss_pred EEEEeCCCCC-ceEee-cCCCcccCceECCCCC-EEEEEEecCCCcEEEEEECCCCCeEEecCC--------------CC
Confidence 3445654332 23444 5667888999999999 5655433 33 588889887764322211 12
Q ss_pred ceeEEecCCCcccCCCCCEEEE-EeCCCe--EEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----c
Q 025649 79 FVHAIAIPDADMLDKTNKICVV-AKGDGV--VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----G 151 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~-~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 151 (250)
.....+|+| +++.|+. .+.++. |.++|+.+++....... ........|+|||+.++.....+.. .
T Consensus 263 ~~~~~~wSP------DG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~--~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~ 334 (448)
T PRK04792 263 INGAPRFSP------DGKKLALVLSKDGQPEIYVVDIATKALTRITRH--RAIDTEPSWHPDGKSLIFTSERGGKPQIYR 334 (448)
T ss_pred CcCCeeECC------CCCEEEEEEeCCCCeEEEEEECCCCCeEECccC--CCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 234678998 8987765 455664 77888887764432221 2455678999999988743221111 0
Q ss_pred --CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeC-CC--eEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649 152 --GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 226 (250)
Q Consensus 152 --~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 226 (250)
....+ ...+..........+|+ |+|++++..+. ++ .|.++|+.++... .+... .......
T Consensus 335 ~dl~~g~-~~~Lt~~g~~~~~~~~S---pDG~~l~~~~~~~g~~~I~~~dl~~g~~~----------~lt~~-~~d~~ps 399 (448)
T PRK04792 335 VNLASGK-VSRLTFEGEQNLGGSIT---PDGRSMIMVNRTNGKFNIARQDLETGAMQ----------VLTST-RLDESPS 399 (448)
T ss_pred EECCCCC-EEEEecCCCCCcCeeEC---CCCCEEEEEEecCCceEEEEEECCCCCeE----------EccCC-CCCCCce
Confidence 00011 01111111222346788 89988877654 34 4566787775321 11111 1112346
Q ss_pred ecCCCCCeEEEee-CCce--EEEEeC
Q 025649 227 TTPTESENLVVCD-TSKV--VKVYSI 249 (250)
Q Consensus 227 ~~~~~~~~l~s~~-~d~~--i~vw~~ 249 (250)
|+| ||+.|+..+ .++. +.+++.
T Consensus 400 ~sp-dG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 400 VAP-NGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred ECC-CCCEEEEEEecCCceEEEEEEC
Confidence 887 777665544 4443 555543
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=6.5e-10 Score=85.66 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=112.9
Q ss_pred cEEEEcccceeeeeec-cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 2 WQIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
|.+|++..|+...++. ..|.+.|.++.++.+-. .|.|++.|+.+..|+....+.++.++.. +..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~-------------~~~~ 147 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQ-------------KPLV 147 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccC-------------CCcc
Confidence 6788888999988887 57999999999998877 8999999999999999999988888855 6678
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeecc
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS 160 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (250)
.++.++| |++.+++++ ++|++||+++++ .+..
T Consensus 148 ~sl~is~------D~~~l~~as--~~ik~~~~~~ke----------------------------------------vv~~ 179 (541)
T KOG4547|consen 148 SSLCISP------DGKILLTAS--RQIKVLDIETKE----------------------------------------VVIT 179 (541)
T ss_pred ceEEEcC------CCCEEEecc--ceEEEEEccCce----------------------------------------EEEE
Confidence 8999999 999999987 689999999765 4557
Q ss_pred ccCccccEEEEEeecCCCC-----CcEEEEe-eCCCeEEEEecCCC
Q 025649 161 VGGHTAAASCVAFSMFGER-----GKYLISG-GNDKLVKVWDCSRF 200 (250)
Q Consensus 161 ~~~h~~~v~~~~~~p~~~~-----~~~l~s~-~~d~~i~iwd~~~~ 200 (250)
|.+|.++|.+++|- .+ |.+++++ ..+..+.+|-....
T Consensus 180 ftgh~s~v~t~~f~---~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 180 FTGHGSPVRTLSFT---TLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred ecCCCcceEEEEEE---EeccccccceeeeccccccceeEEEEEcc
Confidence 89999999999997 55 6666654 45777888877653
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.29 E-value=7.6e-11 Score=83.46 Aligned_cols=141 Identities=12% Similarity=0.076 Sum_probs=99.0
Q ss_pred eeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC--ccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 24 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 24 v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
..++.|++.+. .++++..+|.+.+-+...... ++.++. |.-.++...|+. .+.+++.+|
T Consensus 124 ~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~-------------He~E~Wta~f~~-----~~pnlvytG 184 (339)
T KOG0280|consen 124 ALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKV-------------HEFEAWTAKFSD-----KEPNLVYTG 184 (339)
T ss_pred eeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccc-------------cceeeeeeeccc-----CCCceEEec
Confidence 34677888888 688888889888555443322 224442 355667777765 467899999
Q ss_pred eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCc
Q 025649 102 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181 (250)
Q Consensus 102 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 181 (250)
+.|+.++.||++..... ..+..+-|...|.++.-+| |.+.
T Consensus 185 gDD~~l~~~D~R~p~~~--------------------------------------i~~n~kvH~~GV~SI~ss~--~~~~ 224 (339)
T KOG0280|consen 185 GDDGSLSCWDIRIPKTF--------------------------------------IWHNSKVHTSGVVSIYSSP--PKPT 224 (339)
T ss_pred CCCceEEEEEecCCcce--------------------------------------eeecceeeecceEEEecCC--CCCc
Confidence 99999999999832100 0112355888999999998 7889
Q ss_pred EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649 182 YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 182 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
+++||+.|-.|++||.++..+ ++ .-..-.+.|+.+.++|...
T Consensus 225 ~I~TGsYDe~i~~~DtRnm~k--------Pl-~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 225 YIATGSYDECIRVLDTRNMGK--------PL-FKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred eEEEeccccceeeeehhcccC--------cc-ccCccccceEEEEecchhh
Confidence 999999999999999997532 22 1123337788888887443
No 251
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.4e-09 Score=85.69 Aligned_cols=151 Identities=10% Similarity=-0.067 Sum_probs=92.5
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCC---CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ---- 149 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 149 (250)
...+.+.+|+| +++.|+..+.+ ..|.+||+.+++....... ........|+|||+.++.....+.
T Consensus 195 ~~~v~~p~wSP------DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~--~g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 195 PEPIISPAWSP------DGTKLAYVSFESKKPVVYVHDLATGRRRVVANF--KGSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred CCCcccceEcC------CCCEEEEEEccCCCcEEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEEccCCCceE
Confidence 46678899999 99988877643 4699999998865433222 245568899999998874322221
Q ss_pred ccCe-eeeeeccccCccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecC--CCcceecccccceeeeeeccCCceeEE
Q 025649 150 SGGK-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCS--RFQGVQTSINNDLLIKNINLNKKVNWL 225 (250)
Q Consensus 150 ~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (250)
+... .......+..+........|+ |+|+.|+..+. +|...+|.+. ++.. +. ...........
T Consensus 267 y~~d~~~~~~~~lt~~~~~~~~~~wS---pDG~~l~f~s~~~g~~~Iy~~~~~~g~~-------~~---lt~~g~~~~~~ 333 (427)
T PRK02889 267 YTVNADGSGLRRLTQSSGIDTEPFFS---PDGRSIYFTSDRGGAPQIYRMPASGGAA-------QR---VTFTGSYNTSP 333 (427)
T ss_pred EEEECCCCCcEECCCCCCCCcCeEEc---CCCCEEEEEecCCCCcEEEEEECCCCce-------EE---EecCCCCcCce
Confidence 1110 011123344444455677899 89998876654 4666666554 3311 11 11122223456
Q ss_pred EecCCCCCeEEEeeCCc---eEEEEeC
Q 025649 226 CTTPTESENLVVCDTSK---VVKVYSI 249 (250)
Q Consensus 226 ~~~~~~~~~l~s~~~d~---~i~vw~~ 249 (250)
.|+| ||++|+..+.++ .|.+||+
T Consensus 334 ~~Sp-DG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 334 RISP-DGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred EECC-CCCEEEEEEccCCcEEEEEEEC
Confidence 7887 888888766543 6899986
No 252
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.25 E-value=3.2e-11 Score=61.09 Aligned_cols=39 Identities=31% Similarity=0.489 Sum_probs=36.8
Q ss_pred ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEE
Q 025649 10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWD 50 (250)
Q Consensus 10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd 50 (250)
++++.+++ +|.+.|++|+|+|++. +|++|+.|+.|++||
T Consensus 1 g~~~~~~~-~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR-GHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE-SSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred CeEEEEEc-CCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46788999 9999999999999998 899999999999997
No 253
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.24 E-value=3.1e-10 Score=82.20 Aligned_cols=211 Identities=11% Similarity=0.093 Sum_probs=126.4
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC-----ccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-----NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 94 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (250)
-.+-|.++.|...|. +|++|..+|.|.++.-..... ...++.+.+ ..+....+.-...|..+.|.+ +.+
T Consensus 24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshep-EFDYLkSleieEKinkIrw~~----~~n 97 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEP-EFDYLKSLEIEEKINKIRWLD----DGN 97 (433)
T ss_pred hhcceeeEEeecccc-eEeecCCCCeEEEeecccccccceeeeeeeeccCc-ccchhhhhhhhhhhhhceecC----CCC
Confidence 346789999999999 999999999999997543221 111211100 111122222345677888876 234
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeEeecc-CC---CCCCccceeecccceeEEEeeeeeeccCeeeeeeccc-cCccccEE
Q 025649 95 NKICVVAKGDGVVDVINIESELNISRSK-ST---TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV-GGHTAAAS 169 (250)
Q Consensus 95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~ 169 (250)
...++....|.+|++|-+.......... .+ ....+.++.. ...+..+.... ..+.+.+ .+|...|.
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~-------p~~~~~~~~ve--a~prRv~aNaHtyhiN 168 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL-------PVEGRHDLEVE--ASPRRVYANAHTYHIN 168 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeec-------eeeccccceee--eeeeeeccccceeEee
Confidence 5677888899999999987643222100 00 0011111111 00111111111 1122233 46888999
Q ss_pred EEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 170 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 170 ~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
++.++ .+++.++++. |=+|.+|++.-......+..-++ ..+......|++..|+|.....|+-.+..|+|++-|+
T Consensus 169 SIS~N---sD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 169 SISVN---SDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred eeeec---CccceEeecc-ceeeeeccccccCCceeEEEccc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence 99999 8988888875 78999999876533211100010 1122334568889999988888888999999999998
Q ss_pred C
Q 025649 250 S 250 (250)
Q Consensus 250 ~ 250 (250)
+
T Consensus 244 R 244 (433)
T KOG1354|consen 244 R 244 (433)
T ss_pred h
Confidence 5
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.19 E-value=9.9e-09 Score=80.98 Aligned_cols=169 Identities=9% Similarity=0.002 Sum_probs=103.3
Q ss_pred CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC---CeEEEEeCCCceeEee
Q 025649 44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISR 120 (250)
Q Consensus 44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~ 120 (250)
..|.++|...... ..+.. +...+.+..|+| ++++|+.+..+ ..|++||+.+++....
T Consensus 170 ~~l~~~d~~g~~~-~~l~~-------------~~~~~~~p~~Sp------dg~~la~~~~~~~~~~i~v~d~~~g~~~~~ 229 (417)
T TIGR02800 170 YELQVADYDGANP-QTITR-------------SREPILSPAWSP------DGQKLAYVSFESGKPEIYVQDLATGQREKV 229 (417)
T ss_pred ceEEEEcCCCCCC-EEeec-------------CCCceecccCCC------CCCEEEEEEcCCCCcEEEEEECCCCCEEEe
Confidence 3577888753333 33321 234577888998 99999887643 4899999998754433
Q ss_pred ccCCCCCCccceeecccceeEEEeeeee----ec--cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeC-CC--e
Q 025649 121 SKSTTKPLKGSQSTSKVNIRDAEMEILD----QS--GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DK--L 191 (250)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~--~ 191 (250)
... ........|+|||+.++.....+ .. ..... ....+..+........|+ |+|+.|+..+. ++ .
T Consensus 230 ~~~--~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~-~~~~l~~~~~~~~~~~~s---~dg~~l~~~s~~~g~~~ 303 (417)
T TIGR02800 230 ASF--PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK-QLTRLTNGPGIDTEPSWS---PDGKSIAFTSDRGGSPQ 303 (417)
T ss_pred ecC--CCCccceEECCCCCEEEEEECCCCCccEEEEECCCC-CEEECCCCCCCCCCEEEC---CCCCEEEEEECCCCCce
Confidence 222 24456789999998876432211 11 11111 112233343444567888 89988876654 33 5
Q ss_pred EEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCc---eEEEEeC
Q 025649 192 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK---VVKVYSI 249 (250)
Q Consensus 192 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~vw~~ 249 (250)
|+++|+.++. . ..+..+...+....|+| ++++++.++.++ .|.+||+
T Consensus 304 iy~~d~~~~~---------~-~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 304 IYMMDADGGE---------V-RRLTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred EEEEECCCCC---------E-EEeecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeC
Confidence 7778877652 1 22333445566778987 888888877665 7888875
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.17 E-value=6.9e-10 Score=80.39 Aligned_cols=87 Identities=20% Similarity=0.332 Sum_probs=71.2
Q ss_pred ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649 10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 89 (250)
Q Consensus 10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (250)
-.++.+++ +|.+.+.+++|.|... +|.+|..|..+.+||+.-.+-......+ |.+.|+.+...+
T Consensus 187 ~~~i~~~~-~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~g------------h~~kV~~l~~~~-- 250 (404)
T KOG1409|consen 187 CQLITTFN-GHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQG------------HNDKVQALSYAQ-- 250 (404)
T ss_pred CceEEEEc-CcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeecc------------chhhhhhhhhhh--
Confidence 34567788 9999999999999888 8999999999999999755444333333 677888887776
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeCCCce
Q 025649 90 MLDKTNKICVVAKGDGVVDVINIESEL 116 (250)
Q Consensus 90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~ 116 (250)
.-+.+.+++.||.|.+||++...
T Consensus 251 ----~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 251 ----HTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ----hheeeeeccCCCeEEEEecccee
Confidence 77899999999999999998643
No 256
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.16 E-value=2.8e-10 Score=83.78 Aligned_cols=97 Identities=20% Similarity=0.262 Sum_probs=79.9
Q ss_pred EEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEE
Q 025649 4 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI 83 (250)
Q Consensus 4 iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 83 (250)
+|....+.+. .+- ||-+.++.++++||++ +|+++..|..|++-.....-.+..+-+| |...|..+
T Consensus 136 i~s~~~~~~~-~~l-GhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclG------------H~eFVS~i 200 (390)
T KOG3914|consen 136 ILSADSGRCE-PIL-GHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLG------------HKEFVSTI 200 (390)
T ss_pred eecccccCcc-hhh-hhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccc------------cHhheeee
Confidence 4444333332 334 8999999999999999 8999999999999988877777788777 89999999
Q ss_pred ecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc
Q 025649 84 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 122 (250)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 122 (250)
+..+ +..|++++.|++|++||+.+++.+....
T Consensus 201 sl~~-------~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTD-------NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecc-------CceeeecCCCCcEEEEecccCCcccccc
Confidence 9985 7779999999999999999998775443
No 257
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=1.3e-10 Score=92.06 Aligned_cols=185 Identities=17% Similarity=0.209 Sum_probs=120.0
Q ss_pred EEEcc---cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC-CccceecCCCCCCCCCCcccCCCc
Q 025649 4 IIDIR---QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 4 iwd~~---~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+|++. ....-..+- ||...|+.+-|+|..+..+++++.|-.+..||+++.. ++..+..- ...
T Consensus 95 iwnlA~ss~~aIef~lh-ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w-------------~s~ 160 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLH-GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW-------------RSA 160 (1081)
T ss_pred hhhhhcCCccceEEEEe-cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc-------------ccc
Confidence 46554 222334455 9999999999999998799999999999999998754 33333211 233
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeec
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY 159 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (250)
...+.|+- .+++.+|+ +..+.|.+||++.+.. ++.
T Consensus 161 asqVkwny-----k~p~vlas-shg~~i~vwd~r~gs~---------------------------------------pl~ 195 (1081)
T KOG0309|consen 161 ASQVKWNY-----KDPNVLAS-SHGNDIFVWDLRKGST---------------------------------------PLC 195 (1081)
T ss_pred Cceeeecc-----cCcchhhh-ccCCceEEEeccCCCc---------------------------------------ceE
Confidence 45677765 35555554 5667899999997542 223
Q ss_pred cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee-----------------------------------
Q 025649 160 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ----------------------------------- 204 (250)
Q Consensus 160 ~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----------------------------------- 204 (250)
.+++|...|+.++|.. .....+.+.+.||+|+.||........
T Consensus 196 s~K~~vs~vn~~~fnr--~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~ 273 (1081)
T KOG0309|consen 196 SLKGHVSSVNSIDFNR--FKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQ 273 (1081)
T ss_pred EecccceeeehHHHhh--hhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeee
Confidence 4455666666666652 123356666667777777665432210
Q ss_pred -----------cccccceeeeeeccCCceeEEEecCC---CC------CeEEEeeCCceEEEEeC
Q 025649 205 -----------TSINNDLLIKNINLNKKVNWLCTTPT---ES------ENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 205 -----------~~~~~~~~~~~~~~~~~v~~~~~~~~---~~------~~l~s~~~d~~i~vw~~ 249 (250)
....+.++..+.+|...|....|-.. ++ -.|+|=+.|..+++|-+
T Consensus 274 ~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 274 LRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred ccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence 11234567788899988876655421 11 14899999999999975
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=8.2e-09 Score=81.72 Aligned_cols=189 Identities=10% Similarity=-0.004 Sum_probs=104.8
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCe--EEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK--LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
|.+||+.+++.. .+. ...+.....+|+|+|+.++++.+.+|. |.++|+.+++...... +...
T Consensus 244 L~~~dl~tg~~~-~lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~--------------~~~~ 307 (448)
T PRK04792 244 IFVQDIYTQVRE-KVT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR--------------HRAI 307 (448)
T ss_pred EEEEECCCCCeE-Eec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc--------------CCCC
Confidence 677888877653 233 223344578999999954455666775 7777887665432221 1234
Q ss_pred eeEEecCCCcccCCCCCEEEEEeC-CC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----c--
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKG-DG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----S-- 150 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-- 150 (250)
.....|+| +++.|+..+. ++ .|.++|+.+++....... ........|+|||+.++....... .
T Consensus 308 ~~~p~wSp------DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~ 379 (448)
T PRK04792 308 DTEPSWHP------DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQ 379 (448)
T ss_pred ccceEECC------CCCEEEEEECCCCCceEEEEECCCCCEEEEecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEE
Confidence 46678898 8887766553 33 566678877664332211 122345789999998875332111 0
Q ss_pred cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeC-CC--eEEEEecCCCcceecccccceeeeeeccCCceeEEEe
Q 025649 151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 227 (250)
Q Consensus 151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 227 (250)
+....+ ...+... .......|+ |+|+.|+..+. ++ .+.+++.... ....+..+.+.+...+|
T Consensus 380 dl~~g~-~~~lt~~-~~d~~ps~s---pdG~~I~~~~~~~g~~~l~~~~~~G~----------~~~~l~~~~g~~~~p~W 444 (448)
T PRK04792 380 DLETGA-MQVLTST-RLDESPSVA---PNGTMVIYSTTYQGKQVLAAVSIDGR----------FKARLPAGQGEVKSPAW 444 (448)
T ss_pred ECCCCC-eEEccCC-CCCCCceEC---CCCCEEEEEEecCCceEEEEEECCCC----------ceEECcCCCCCcCCCcc
Confidence 001111 0111111 111234688 89988776554 33 3677776442 22333344455666677
Q ss_pred cC
Q 025649 228 TP 229 (250)
Q Consensus 228 ~~ 229 (250)
+|
T Consensus 445 sp 446 (448)
T PRK04792 445 SP 446 (448)
T ss_pred CC
Confidence 76
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.13 E-value=4.5e-07 Score=69.62 Aligned_cols=218 Identities=15% Similarity=0.106 Sum_probs=126.7
Q ss_pred cEEEEc--ccceee--eeeccCCCCCeeeEEEcCCCCeEEEEecC----CCeEEEEEccCC--C--CccceecCCCCCCC
Q 025649 2 WQIIDI--RQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGL----DSKLVMWDFSKG--R--PNKIVNFGLPENNG 69 (250)
Q Consensus 2 i~iwd~--~~~~~~--~~l~~~h~~~v~~l~~~~~~~~~l~s~s~----dg~v~iwd~~~~--~--~~~~~~~~~~~~~~ 69 (250)
|.+|++ +++++. ..+. -......|+++|+++ +|.+... ++.|..|++... + .+......
T Consensus 15 I~~~~~d~~~g~l~~~~~~~--~~~~Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~------ 85 (345)
T PF10282_consen 15 IYVFRFDEETGTLTLVQTVA--EGENPSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSG------ 85 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEE--ESSSECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEES------
T ss_pred EEEEEEcCCCCCceEeeeec--CCCCCceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeeeccC------
Confidence 455555 555543 2222 345567899999999 6666544 689999998764 2 22222211
Q ss_pred CCCcccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCC-ceeEee---cc---------CCCCCCccceeec
Q 025649 70 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES-ELNISR---SK---------STTKPLKGSQSTS 135 (250)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~~---~~---------~~~~~~~~~~~~~ 135 (250)
......++++| ++++|+++. .+|.|.++++.. +..... .. ........++.++
T Consensus 86 -------g~~p~~i~~~~------~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~ 152 (345)
T PF10282_consen 86 -------GSSPCHIAVDP------DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS 152 (345)
T ss_dssp -------SSCEEEEEECT------TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred -------CCCcEEEEEec------CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence 23345688888 899888886 589999999987 333222 11 1223556789999
Q ss_pred ccceeEEEee-------eeeeccCe-eeeeecccc-CccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecC--CCcce
Q 025649 136 KVNIRDAEME-------ILDQSGGK-RLHLDYSVG-GHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCS--RFQGV 203 (250)
Q Consensus 136 ~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~--~~~~~ 203 (250)
|+|++++... .++..... .......+. ........++|+ |+++++.... .++.|.++++. .+...
T Consensus 153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~---pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~ 229 (345)
T PF10282_consen 153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS---PDGKYAYVVNELSNTVSVFDYDPSDGSLT 229 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE----TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc---CCcCEEEEecCCCCcEEEEeecccCCcee
Confidence 9999887421 12221111 121111111 223456899999 8988876665 47899999998 33111
Q ss_pred ecccccceeeee---eccCCceeEEEecCCCCCeEEEee-CCceEEEEeC
Q 025649 204 QTSINNDLLIKN---INLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI 249 (250)
Q Consensus 204 ~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~ 249 (250)
.. ..+... .........++++| ||++|+++. .++.|.+|++
T Consensus 230 ~~----~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 230 EI----QTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EE----EEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEE
T ss_pred EE----EEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEE
Confidence 00 111111 01112577888987 898887755 5678999886
No 260
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.12 E-value=1.1e-07 Score=67.66 Aligned_cols=202 Identities=7% Similarity=-0.019 Sum_probs=111.4
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 102 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 102 (250)
.=..++||||+. +||.+...|+|+++|+. |..+..+.... . ........|-++.|.+......-...|++-.
T Consensus 45 QWRkl~WSpD~t-lLa~a~S~G~i~vfdl~-g~~lf~I~p~~----~--~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~ 116 (282)
T PF15492_consen 45 QWRKLAWSPDCT-LLAYAESTGTIRVFDLM-GSELFVIPPAM----S--FPGDLSDAIAGLIFLEYKKSAQWSYELLVIN 116 (282)
T ss_pred hheEEEECCCCc-EEEEEcCCCeEEEEecc-cceeEEcCccc----c--cCCccccceeeeEeeccccccccceeEEEEe
Confidence 446899999999 99999999999999996 34444444220 0 0011234566666654211001134667777
Q ss_pred CCCeEEEEeCCCc-----eeE--eeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeec
Q 025649 103 GDGVVDVINIESE-----LNI--SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM 175 (250)
Q Consensus 103 ~d~~i~~~d~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 175 (250)
.+|.++-|-+..+ +.. ..+.......+.++.++|..++++ ++......... -.+....+++=..--
T Consensus 117 Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLl-VgG~~~~~~~~------s~a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 117 YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLL-VGGCEQNQDGM------SKASSCGLTAWRILS 189 (282)
T ss_pred ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEE-EeccCCCCCcc------ccccccCceEEEEcC
Confidence 8888887765321 111 223334456888888999888777 33332221100 011122333322220
Q ss_pred CCCCCcEEEEeeCCCe------EEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 176 FGERGKYLISGGNDKL------VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 176 ~~~~~~~l~s~~~d~~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
-.|.... ++...|+. -.+|.+-+. ............|..|..+| ||+.|++...+|.|.+|++
T Consensus 190 ~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~---------~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 190 DSPYYKQ-VTSSEDDITASSKRRGLLRIPSF---------KFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred CCCcEEE-ccccCccccccccccceeeccce---------eeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEec
Confidence 0011111 12222221 123333322 12122233456799999998 9999999999999999997
Q ss_pred C
Q 025649 250 S 250 (250)
Q Consensus 250 ~ 250 (250)
+
T Consensus 259 P 259 (282)
T PF15492_consen 259 P 259 (282)
T ss_pred C
Confidence 5
No 261
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.12 E-value=2.4e-09 Score=79.02 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=93.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCcee----EeeccCCCCCCccceeecccceeE-EE-----eeeeeeccCeeeeeeccccC
Q 025649 94 TNKICVVAKGDGVVDVINIESELN----ISRSKSTTKPLKGSQSTSKVNIRD-AE-----MEILDQSGGKRLHLDYSVGG 163 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~ 163 (250)
+++++|++..+....+++...... ......+ .....+.+..+.... +. ....+...... .+...+-|
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~--~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~~~~~lG 149 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP--KRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GRCEPILG 149 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEeecc--cCcceeeeeeccceEEEEeecCCceeeeeecccc-cCcchhhh
Confidence 889999998888887887765332 1111111 222333333322222 11 11222222221 23345568
Q ss_pred ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCce
Q 025649 164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV 243 (250)
Q Consensus 164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 243 (250)
|-..++.|+++ ||+++++++..|..|++-.+.... ..-....+|...|..++.. +++.|++||.|++
T Consensus 150 hvSml~dVavS---~D~~~IitaDRDEkIRvs~ypa~f--------~IesfclGH~eFVS~isl~--~~~~LlS~sGD~t 216 (390)
T KOG3914|consen 150 HVSMLLDVAVS---PDDQFIITADRDEKIRVSRYPATF--------VIESFCLGHKEFVSTISLT--DNYLLLSGSGDKT 216 (390)
T ss_pred hhhhhheeeec---CCCCEEEEecCCceEEEEecCccc--------chhhhccccHhheeeeeec--cCceeeecCCCCc
Confidence 99999999999 899999999999999998877642 1222446899999999986 4567999999999
Q ss_pred EEEEeCC
Q 025649 244 VKVYSIS 250 (250)
Q Consensus 244 i~vw~~~ 250 (250)
+++||+.
T Consensus 217 lr~Wd~~ 223 (390)
T KOG3914|consen 217 LRLWDIT 223 (390)
T ss_pred EEEEecc
Confidence 9999974
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=1.2e-08 Score=80.67 Aligned_cols=189 Identities=8% Similarity=0.009 Sum_probs=106.1
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
|.+||+.+++.. .+. ...+.+...+|+|+|+.++++.+.+| .|.+||+.+++... +. . +...
T Consensus 225 l~~~~l~~g~~~-~l~-~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt-~------------~~~~ 288 (430)
T PRK00178 225 IFVQNLDTGRRE-QIT-NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT-N------------HPAI 288 (430)
T ss_pred EEEEECCCCCEE-Ecc-CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cc-c------------CCCC
Confidence 677888877653 333 33445567899999984444665555 58888988765432 22 1 1233
Q ss_pred eeEEecCCCcccCCCCCEEEEEeC-C--CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----c--
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKG-D--GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----S-- 150 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-- 150 (250)
.....|+| +++.|+..+. + ..|.++|+.+++....... ........|+|+|+.++.....+. .
T Consensus 289 ~~~~~~sp------Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~ 360 (430)
T PRK00178 289 DTEPFWGK------DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQ 360 (430)
T ss_pred cCCeEECC------CCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEEccCCceEEEEE
Confidence 45677888 8887766553 3 3577778877664332211 123445789999999875332111 0
Q ss_pred cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC---CeEEEEecCCCcceecccccceeeeeeccCCceeEEEe
Q 025649 151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 227 (250)
Q Consensus 151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 227 (250)
+....+ ...+. +........|+ |+|+.++..+.+ ..|.+.++... ....+..+.+.+...+|
T Consensus 361 dl~tg~-~~~lt-~~~~~~~p~~s---pdg~~i~~~~~~~g~~~l~~~~~~g~----------~~~~l~~~~g~~~~p~w 425 (430)
T PRK00178 361 DLQRGS-VRILT-DTSLDESPSVA---PNGTMLIYATRQQGRGVLMLVSINGR----------VRLPLPTAQGEVREPSW 425 (430)
T ss_pred ECCCCC-EEEcc-CCCCCCCceEC---CCCCEEEEEEecCCceEEEEEECCCC----------ceEECcCCCCCcCCCcc
Confidence 111111 01111 11112245788 899988776643 34667777543 11222334445666667
Q ss_pred cC
Q 025649 228 TP 229 (250)
Q Consensus 228 ~~ 229 (250)
+|
T Consensus 426 s~ 427 (430)
T PRK00178 426 SP 427 (430)
T ss_pred CC
Confidence 65
No 263
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=1.8e-10 Score=88.75 Aligned_cols=163 Identities=12% Similarity=0.139 Sum_probs=107.1
Q ss_pred eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CC------CccceecCCCCCCCCCCcccCCCceeEEec
Q 025649 13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GR------PNKIVNFGLPENNGNAGQCYNPAFVHAIAI 85 (250)
Q Consensus 13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 85 (250)
++.+. ||...|..++--.+.. -+++++.|.+|++|.++. +. +..+++ .|...|+++.|
T Consensus 728 L~nf~-GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-------------aHkk~i~~igf 792 (1034)
T KOG4190|consen 728 LCNFT-GHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-------------AHKKPIHDIGF 792 (1034)
T ss_pred eeccc-CcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhh-------------hccCcccceee
Confidence 45677 9999999988666665 699999999999999863 21 222332 36889999999
Q ss_pred CCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc-CCCCCCccceeeccc-ceeEEEee--------eeeeccCeee
Q 025649 86 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK-STTKPLKGSQSTSKV-NIRDAEME--------ILDQSGGKRL 155 (250)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~ 155 (250)
-. +.+++++ .||.|++||.--++.+.... .+.......+..-++ .+.++..+ ..|.+..+-.
T Consensus 793 L~------~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~ 864 (1034)
T KOG4190|consen 793 LA------DLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT 864 (1034)
T ss_pred ee------ccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce
Confidence 87 6777765 47899999988777665332 222233333333333 22222122 2222222111
Q ss_pred e--eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649 156 H--LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 201 (250)
Q Consensus 156 ~--~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~ 201 (250)
- .+..-.+...-+.+++.. +.|+.++.+-..|+|.+-|.++++
T Consensus 865 ~E~kVcna~~Pna~~R~iaVa---~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 865 CELKVCNAPGPNALTRAIAVA---DKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred eeEEeccCCCCchheeEEEec---cCcchhhHHhcCCcEEEEecCCCc
Confidence 1 112223455678899998 899999999999999999999984
No 264
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.12 E-value=3.9e-10 Score=57.02 Aligned_cols=38 Identities=32% Similarity=0.686 Sum_probs=35.4
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEe
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 196 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd 196 (250)
+++..+.+|.+.|++++|+ |++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~---~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWS---PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEE---TTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEe---cccccceeeCCCCEEEEEC
Confidence 4567899999999999999 8899999999999999997
No 265
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.10 E-value=1.9e-07 Score=79.61 Aligned_cols=206 Identities=16% Similarity=0.105 Sum_probs=130.5
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecC----------------------CCCCCC---------
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG----------------------LPENNG--------- 69 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----------------------~~~~~~--------- 69 (250)
...|.+++||||++ +|+..+.+++|.+-+- +.+++...... ....+.
T Consensus 120 d~GI~a~~WSPD~E-lla~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 120 DSGILAASWSPDEE-LLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred cCcEEEEEECCCcC-EEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 46899999999999 8998888888887643 22222211111 000000
Q ss_pred -----CCCcccCCCceeEEecCCCcccCCCCCEEEEEeC---C---CeEEEEeCCCceeEeeccCCCCCCccceeecccc
Q 025649 70 -----NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---D---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 138 (250)
Q Consensus 70 -----~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~---d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (250)
..... ..+.-..++|.. ||.++|+.+- . ..+++|+-+ |......+ +..+.-..++|.|.|
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISWRG------DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG 268 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISWRG------DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSG 268 (928)
T ss_pred CCccccCccc-cCCCceEEEECC------CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCC
Confidence 00111 233455677887 9999999874 2 579999987 55444443 444667789999999
Q ss_pred eeEEEeeeeeec---------cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccc
Q 025649 139 IRDAEMEILDQS---------GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN 209 (250)
Q Consensus 139 ~~~~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 209 (250)
++++++...... ..+..+..-.+......|..+.|+ +++..||..-.|. |.+|-..+..
T Consensus 269 ~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn---~ds~iLAv~~~~~-vqLWt~~NYH-------- 336 (928)
T PF04762_consen 269 NLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWN---SDSEILAVWLEDR-VQLWTRSNYH-------- 336 (928)
T ss_pred CEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEEC---CCCCEEEEEecCC-ceEEEeeCCE--------
Confidence 999965531111 111122112223455679999999 8999999977655 9999988863
Q ss_pred ceeeeeec--cCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 210 DLLIKNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 210 ~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
..++.... ....+..+.|+|.+...|.....+|.+..+++
T Consensus 337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 22222222 22335558999988888888887777776653
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.07 E-value=4.5e-09 Score=76.33 Aligned_cols=169 Identities=12% Similarity=0.161 Sum_probs=108.5
Q ss_pred eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649 14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD 92 (250)
Q Consensus 14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 92 (250)
+.+.++|+-.|++|+++.|.+ .++++ +|=.|.+|+++-. +........ |. ...--..-|++..|+|
T Consensus 157 Rv~aNaHtyhiNSIS~NsD~E-t~lSA-DdLRINLWnlei~d~sFnIVDIK-P~-----nmEeLteVITsaEFhp----- 223 (433)
T KOG1354|consen 157 RVYANAHTYHINSISVNSDKE-TFLSA-DDLRINLWNLEIIDQSFNIVDIK-PA-----NMEELTEVITSAEFHP----- 223 (433)
T ss_pred eeccccceeEeeeeeecCccc-eEeec-cceeeeeccccccCCceeEEEcc-cc-----CHHHHHHHHhhhccCH-----
Confidence 344458999999999999998 56665 4678999998632 322222211 00 0000123467778888
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCceeE----eeccCCC-----------CCCccceeecccceeEEE-----eeeeeecc-
Q 025649 93 KTNKICVVAKGDGVVDVINIESELNI----SRSKSTT-----------KPLKGSQSTSKVNIRDAE-----MEILDQSG- 151 (250)
Q Consensus 93 ~~~~~l~~~~~d~~i~~~d~~~~~~~----~~~~~~~-----------~~~~~~~~~~~~~~~~~~-----~~~~~~~~- 151 (250)
...+.++-.+..|+|++.|++..... ..+..+. -..|..+.|+++|+++++ +..||...
T Consensus 224 ~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme 303 (433)
T KOG1354|consen 224 HHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNME 303 (433)
T ss_pred hHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecccc
Confidence 56788888889999999999953211 1111111 135777899999999985 66777743
Q ss_pred CeeeeeeccccCcc------------ccE---EEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649 152 GKRLHLDYSVGGHT------------AAA---SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 201 (250)
Q Consensus 152 ~~~~~~~~~~~~h~------------~~v---~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~ 201 (250)
..+. .+++-|. ..| ..+.|+ -++.+++||+.....++++...+.
T Consensus 304 ~~pv---~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s---g~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 304 AKPV---ETYPVHEYLRSKLCSLYENDAIFDKFECSWS---GNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred CCcc---eEEeehHhHHHHHHHHhhccchhheeEEEEc---CCcceEecccccceEEEecCCCCc
Confidence 2222 2222221 112 356777 778899999999999999966553
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=1.2e-06 Score=64.46 Aligned_cols=209 Identities=11% Similarity=0.082 Sum_probs=129.1
Q ss_pred CeeeEEEcCCCCeEEEEecC-CCeEEEEEccC-CCCccceecCC-CCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649 23 ICSSVQFIPWKPWEVISGGL-DSKLVMWDFSK-GRPNKIVNFGL-PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 99 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~-dg~v~iwd~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 99 (250)
+-..++++++++ +++++.. -|.|.++-++. |........-. ....++ ..-....++...+.| ++++|+
T Consensus 90 ~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~--~rQ~~~h~H~a~~tP------~~~~l~ 160 (346)
T COG2706 90 PPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPH--ERQESPHVHSANFTP------DGRYLV 160 (346)
T ss_pred CCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCC--ccccCCccceeeeCC------CCCEEE
Confidence 337899999999 6666654 58999999965 44332222110 000000 000122378888998 999988
Q ss_pred EEe-CCCeEEEEeCCCceeEee--ccCCCCCCccceeecccceeEEEeeeeee-------cc-C---eeeeeeccccC--
Q 025649 100 VAK-GDGVVDVINIESELNISR--SKSTTKPLKGSQSTSKVNIRDAEMEILDQ-------SG-G---KRLHLDYSVGG-- 163 (250)
Q Consensus 100 ~~~-~d~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~---~~~~~~~~~~~-- 163 (250)
+.. .--.|.+|++..+..... .........+.+.|+|++++...+.-.+. .. . +..+.+..++.
T Consensus 161 v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 161 VPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred EeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 885 334689999998765432 22345578899999999998875332222 11 1 22233333321
Q ss_pred -ccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC-
Q 025649 164 -HTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT- 240 (250)
Q Consensus 164 -h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~- 240 (250)
...+...|..+ ++|++|.++.. ...|.+|.+....... ........+........+.+ ++++|+++..
T Consensus 241 ~g~~~~aaIhis---~dGrFLYasNRg~dsI~~f~V~~~~g~L-----~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~ 311 (346)
T COG2706 241 TGTNWAAAIHIS---PDGRFLYASNRGHDSIAVFSVDPDGGKL-----ELVGITPTEGQFPRDFNINP-SGRFLIAANQK 311 (346)
T ss_pred CCCCceeEEEEC---CCCCEEEEecCCCCeEEEEEEcCCCCEE-----EEEEEeccCCcCCccceeCC-CCCEEEEEccC
Confidence 23456788888 89999998764 4488888776542211 33344445555677888887 7888877764
Q ss_pred CceEEEEeC
Q 025649 241 SKVVKVYSI 249 (250)
Q Consensus 241 d~~i~vw~~ 249 (250)
+..|.+|.+
T Consensus 312 sd~i~vf~~ 320 (346)
T COG2706 312 SDNITVFER 320 (346)
T ss_pred CCcEEEEEE
Confidence 446777754
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.06 E-value=1.5e-07 Score=71.61 Aligned_cols=117 Identities=10% Similarity=0.012 Sum_probs=88.2
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
+-|+|..+++.. .+. ..-+.|.++..+|+|+ .++.+-....+.+.|+.+|.....-+. ..+-|.
T Consensus 384 l~iyd~~~~e~k-r~e-~~lg~I~av~vs~dGK-~~vvaNdr~el~vididngnv~~idkS-------------~~~lIt 447 (668)
T COG4946 384 LGIYDKDGGEVK-RIE-KDLGNIEAVKVSPDGK-KVVVANDRFELWVIDIDNGNVRLIDKS-------------EYGLIT 447 (668)
T ss_pred EEEEecCCceEE-Eee-CCccceEEEEEcCCCc-EEEEEcCceEEEEEEecCCCeeEeccc-------------ccceeE
Confidence 567888777764 555 5778999999999999 788888888999999998875433221 246789
Q ss_pred EEecCCCcccCCCCCEEEEEeCC----CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE
Q 025649 82 AIAIPDADMLDKTNKICVVAKGD----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (250)
..+|+| +++++|-+--+ ..|+++|+.+++........ ..-.+-+|.|++++|.
T Consensus 448 df~~~~------nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t--a~DfsPaFD~d~ryLY 504 (668)
T COG4946 448 DFDWHP------NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT--AYDFSPAFDPDGRYLY 504 (668)
T ss_pred EEEEcC------CceeEEEecCcceeeeeEEEEecCCCeEEEecCCc--ccccCcccCCCCcEEE
Confidence 999999 99999887554 47899999987755432221 3455678999998886
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=2.5e-07 Score=80.23 Aligned_cols=197 Identities=11% Similarity=0.042 Sum_probs=109.4
Q ss_pred eeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCC-CCC-CCCCCcccCCCceeEEecCCCcccCCCCC-EEEE
Q 025649 24 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL-PEN-NGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVV 100 (250)
Q Consensus 24 v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~ 100 (250)
-..++++|++..++++.+.++.|++||..++... .+.... ... .........-.....++++| +++ ++++
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp------dG~~LYVA 757 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP------DLKELYIA 757 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC------CCCEEEEE
Confidence 3579999954437788888999999999776432 221000 000 00000001113456788888 877 4455
Q ss_pred EeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCC
Q 025649 101 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG 180 (250)
Q Consensus 101 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 180 (250)
-+.++.|++||+.++......... .. + ++. +...+..+.. . ....-.....++++ ++|
T Consensus 758 Ds~n~~Irv~D~~tg~~~~~~gg~---~~----~-~~~--l~~fG~~dG~---g------~~~~l~~P~Gvavd---~dG 815 (1057)
T PLN02919 758 DSESSSIRALDLKTGGSRLLAGGD---PT----F-SDN--LFKFGDHDGV---G------SEVLLQHPLGVLCA---KDG 815 (1057)
T ss_pred ECCCCeEEEEECCCCcEEEEEecc---cc----c-Ccc--cccccCCCCc---h------hhhhccCCceeeEe---CCC
Confidence 567799999999875422110000 00 0 000 0000000000 0 00111224578899 899
Q ss_pred cEEEEeeCCCeEEEEecCCCcceecccccce-e---eeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 181 KYLISGGNDKLVKVWDCSRFQGVQTSINNDL-L---IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 181 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+++++-+.+++|++||..++........... . ....+.-..+..+++.+ +|+++++-+.++.|++||++
T Consensus 816 ~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 816 QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEECC
Confidence 9888888999999999988643211110000 0 00111223577888987 88888888889999999973
No 270
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.04 E-value=6.3e-08 Score=68.30 Aligned_cols=159 Identities=14% Similarity=0.058 Sum_probs=105.3
Q ss_pred eeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccc-eecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 24 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKI-VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 24 v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
+.+++++++++ .+++.+....|-.|.+... +.+.. .... ..+.-.+..|+. ....+|++
T Consensus 161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~------------t~D~gF~~S~s~------~~~~FAv~ 221 (344)
T KOG4532|consen 161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAP------------TSDHGFYNSFSE------NDLQFAVV 221 (344)
T ss_pred eeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecc------------cCCCceeeeecc------CcceEEEE
Confidence 88999999999 7888898899999998753 32222 2212 334556778887 88899999
Q ss_pred eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCc
Q 025649 102 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181 (250)
Q Consensus 102 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 181 (250)
.+||++.+||++....+..... .+-..|.+.+..+.|+|..+..-
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~s-----------------------------------strp~hnGa~R~c~Fsl~g~lDL 266 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEIS-----------------------------------STRPHHNGAFRVCRFSLYGLLDL 266 (344)
T ss_pred ecCCcEEEEEecccccchhhhc-----------------------------------ccCCCCCCceEEEEecCCCcceE
Confidence 9999999999997543332222 12345899999999996544433
Q ss_pred EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC-CceeEEEecCCCCCeEEEeeC
Q 025649 182 YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCDT 240 (250)
Q Consensus 182 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~ 240 (250)
++++- .-+.+.+-|++++...+....++- ....|. ..+..-.|+. ++..+.+.+.
T Consensus 267 Lf~sE-hfs~~hv~D~R~~~~~q~I~i~~d--~~~~~~tq~ifgt~f~~-~n~s~~v~~e 322 (344)
T KOG4532|consen 267 LFISE-HFSRVHVVDTRNYVNHQVIVIPDD--VERKHNTQHIFGTNFNN-ENESNDVKNE 322 (344)
T ss_pred EEEec-CcceEEEEEcccCceeeEEecCcc--ccccccccccccccccC-CCcccccccc
Confidence 44443 457899999999876543222211 122333 3377777765 5554544443
No 271
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4e-08 Score=72.94 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=78.3
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
+++.+..+.+...-+. +|...|.+++|+|....++..++.+..|+|.|+++...+..+..+ ..++
T Consensus 175 v~~l~~~~fkssq~lp-~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--------------~~~w 239 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILP-GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--------------NQIW 239 (463)
T ss_pred eEEeccCCcchhhccc-ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--------------CCce
Confidence 3455555566666666 888999999999998778999999999999999998888777733 6789
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 116 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 116 (250)
+.+|.- .+.++|..|..+|.|.+||++..+
T Consensus 240 SC~wDl-----de~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 240 SCCWDL-----DERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eeeecc-----CCcceeEEeccCceEEEEEccCCC
Confidence 999986 357789999999999999999743
No 272
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=1.8e-09 Score=78.41 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=92.2
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 99 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 99 (250)
..+.|.++.|...++ ++..|..+|.|...|++.... .........+|+..|+++..-. .++.+|+
T Consensus 251 sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnq---------G~~~~a~rlyh~Ssvtslq~Lq-----~s~q~Lm 315 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQ---------GNGWCAQRLYHDSSVTSLQILQ-----FSQQKLM 315 (425)
T ss_pred cchhHHHHHhcccCC-eeEecccCCcEEEEEeeeccc---------CCCcceEEEEcCcchhhhhhhc-----cccceEe
Confidence 456799999999888 899999999999999986411 0111122334788888887764 4788999
Q ss_pred EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649 100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 179 (250)
Q Consensus 100 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 179 (250)
+.+.+|+|++||++.-+.. +-+.++.||.+.-.-+-+. ..+.
T Consensus 316 aS~M~gkikLyD~R~~K~~-------------------------------------~~V~qYeGHvN~~a~l~~~-v~~e 357 (425)
T KOG2695|consen 316 ASDMTGKIKLYDLRATKCK-------------------------------------KSVMQYEGHVNLSAYLPAH-VKEE 357 (425)
T ss_pred eccCcCceeEeeehhhhcc-------------------------------------cceeeeecccccccccccc-cccc
Confidence 9999999999999963321 1234666775432222222 1255
Q ss_pred CcEEEEeeCCCeEEEEecCCCcc
Q 025649 180 GKYLISGGNDKLVKVWDCSRFQG 202 (250)
Q Consensus 180 ~~~l~s~~~d~~i~iwd~~~~~~ 202 (250)
...+++++.|...+||.++.+..
T Consensus 358 eg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 358 EGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred cceEEEccCeeEEEEEecccCce
Confidence 66888899999999999999843
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=1e-06 Score=64.79 Aligned_cols=224 Identities=13% Similarity=0.087 Sum_probs=127.3
Q ss_pred cEEEEccc--ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC---CCeEEEEEccC--CCCccceecCCCCCCCCCCcc
Q 025649 2 WQIIDIRQ--HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DSKLVMWDFSK--GRPNKIVNFGLPENNGNAGQC 74 (250)
Q Consensus 2 i~iwd~~~--~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~ 74 (250)
|++|++.+ +++-..-...+.+..+-|+|+|+++ .|.++-. +|.|..|.+.. |+....-+.. .
T Consensus 18 I~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~-~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~---------~- 86 (346)
T COG2706 18 IYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQR-HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT---------L- 86 (346)
T ss_pred eEEEEEeCcccccchhhhccccCCCceEEECCCCC-EEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc---------c-
Confidence 67888773 3322111125778899999999998 6776643 57788777764 4422111100 0
Q ss_pred cCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCC-ceeEe---eccCC--------CCCCccceeecccceeE
Q 025649 75 YNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES-ELNIS---RSKST--------TKPLKGSQSTSKVNIRD 141 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~---~~~~~--------~~~~~~~~~~~~~~~~~ 141 (250)
....-.-+++++ ++++++++. .-|.|.++-++. |.... ..... ...-+....++|+++++
T Consensus 87 -~g~~p~yvsvd~------~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l 159 (346)
T COG2706 87 -PGSPPCYVSVDE------DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYL 159 (346)
T ss_pred -CCCCCeEEEECC------CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEE
Confidence 011226678887 899988886 458999999866 33221 11111 11226778899999999
Q ss_pred EEe-------eeeeeccCeee-eeeccccCccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecCCCc-ceecccccce
Q 025649 142 AEM-------EILDQSGGKRL-HLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQ-GVQTSINNDL 211 (250)
Q Consensus 142 ~~~-------~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~-~~~~~~~~~~ 211 (250)
++. ..++..++.-. .....+ ........+.|+ |++++....++ +++|.+|...... .....+.-..
T Consensus 160 ~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FH---pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t 235 (346)
T COG2706 160 VVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFH---PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT 235 (346)
T ss_pred EEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEc---CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeecc
Confidence 852 22222222110 011122 223456899999 89999888776 8999999998841 1111100011
Q ss_pred eeeeeccCCceeEEEecCCCCCeEEEeeC-CceEEEEe
Q 025649 212 LIKNINLNKKVNWLCTTPTESENLVVCDT-SKVVKVYS 248 (250)
Q Consensus 212 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~vw~ 248 (250)
+..-..-......+..++ ||++|.++.+ ...|-+|.
T Consensus 236 lP~dF~g~~~~aaIhis~-dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 236 LPEDFTGTNWAAAIHISP-DGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred CccccCCCCceeEEEECC-CCCEEEEecCCCCeEEEEE
Confidence 111111223455667776 9998887653 22455554
No 274
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.01 E-value=9.3e-07 Score=64.81 Aligned_cols=175 Identities=12% Similarity=0.013 Sum_probs=113.6
Q ss_pred cEEEEcccceeeeeeccCCCCCe--eeEEEcCCCCeEEEEec-----CCCeEEEEEcc-CCCCccceecCCCCCCCCCCc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSIC--SSVQFIPWKPWEVISGG-----LDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v--~~l~~~~~~~~~l~s~s-----~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~ 73 (250)
..+||..+++....+. ...+.- -.-.||+||+ +|++.- ..|.|-|||.. +.+.+..+..+
T Consensus 30 ~~v~D~~~g~~~~~~~-a~~gRHFyGHg~fs~dG~-~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~---------- 97 (305)
T PF07433_consen 30 ALVFDCRTGQLLQRLW-APPGRHFYGHGVFSPDGR-LLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH---------- 97 (305)
T ss_pred EEEEEcCCCceeeEEc-CCCCCEEecCEEEcCCCC-EEEEeccccCCCcEEEEEEECcCCcEEEeEecCC----------
Confidence 4589999999887776 433322 1457999999 666653 35899999998 44555555533
Q ss_pred ccCCCceeEEecCCCcccCCCCCEEEEEeC------------------CCeEEEEeCCCceeEeeccC---CCCCCccce
Q 025649 74 CYNPAFVHAIAIPDADMLDKTNKICVVAKG------------------DGVVDVINIESELNISRSKS---TTKPLKGSQ 132 (250)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~~---~~~~~~~~~ 132 (250)
--.-+.+.+.| +++.|+++-. +..+.+.|..+|+.+.+... .+...+..+
T Consensus 98 ---GIGPHel~l~p------DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 98 ---GIGPHELLLMP------DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred ---CcChhhEEEcC------CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence 12336677777 8877777632 33567778888887766443 234679999
Q ss_pred eecccceeEEEeeeeeeccCee---------eeeecc-------ccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEE
Q 025649 133 STSKVNIRDAEMEILDQSGGKR---------LHLDYS-------VGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVW 195 (250)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-------~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iw 195 (250)
++.++|..++ ..-+....... .+.+.. ...-.+.+-+|+++ +++.+++..| .-+.+.+|
T Consensus 169 a~~~~G~V~~-a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~---~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 169 AVDGDGTVAF-AMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAAD---RDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred EecCCCcEEE-EEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEe---CCCCEEEEECCCCCEEEEE
Confidence 9999998877 22222221110 000111 12234678899999 8887776555 57899999
Q ss_pred ecCCCc
Q 025649 196 DCSRFQ 201 (250)
Q Consensus 196 d~~~~~ 201 (250)
|..++.
T Consensus 245 d~~tg~ 250 (305)
T PF07433_consen 245 DAATGR 250 (305)
T ss_pred ECCCCC
Confidence 999983
No 275
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=1.8e-07 Score=73.74 Aligned_cols=174 Identities=7% Similarity=-0.038 Sum_probs=93.4
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC----eEEEEEccCCC--CccceecCCCCCCCCCCccc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS----KLVMWDFSKGR--PNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg----~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~ 75 (250)
|.+.++.+++.. .+. ...+.....+|+|||+.++++...+| .+.+|++..+. ....+..+
T Consensus 213 I~~~~l~~g~~~-~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~------------ 278 (428)
T PRK01029 213 IFLGSLENPAGK-KIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE------------ 278 (428)
T ss_pred EEEEECCCCCce-Eee-cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC------------
Confidence 455677666542 333 23444567899999984444443333 34557766531 11222211
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEE--eCCC-ceeEeeccCCCCCCccceeecccceeEEEeeeeee--
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVI--NIES-ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ-- 149 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~--d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 149 (250)
.........|+| ||+.|+..+ .+|...+| ++.. +.....+... ...+....|+|||+.++.....+.
T Consensus 279 ~~~~~~~p~wSP------DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~~~p~wSPDG~~Laf~~~~~g~~ 351 (428)
T PRK01029 279 AFGTQGNPSFSP------DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNSSCPAWSPDGKKIAFCSVIKGVR 351 (428)
T ss_pred CCCCcCCeEECC------CCCEEEEEECCCCCceEEEEECcccccceEEeccC-CCCccceeECCCCCEEEEEEcCCCCc
Confidence 112335678998 999777665 46655555 4432 2222222221 245567899999998885432111
Q ss_pred --c--cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeC---CCeEEEEecCCC
Q 025649 150 --S--GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN---DKLVKVWDCSRF 200 (250)
Q Consensus 150 --~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~---d~~i~iwd~~~~ 200 (250)
. +....+ ...+......+....|+ |+|+.|+..+. ...|.++|+..+
T Consensus 352 ~I~v~dl~~g~-~~~Lt~~~~~~~~p~wS---pDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 352 QICVYDLATGR-DYQLTTSPENKESPSWA---IDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EEEEEECCCCC-eEEccCCCCCccceEEC---CCCCEEEEEECCCCCceEEEEECCCC
Confidence 1 111111 11222222345678899 89987765432 357888898876
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.98 E-value=1.1e-08 Score=71.67 Aligned_cols=76 Identities=13% Similarity=0.071 Sum_probs=64.2
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
..|++++-+|..++++++|+.||.+-+||.++......+-. .|...++.+-|+| .++..|+++
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~------------ahk~~i~eV~FHp-----k~p~~Lft~ 242 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK------------AHKAEIWEVHFHP-----KNPEHLFTC 242 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH------------HhhhhhhheeccC-----CCchheeEe
Confidence 34999999998887899999999999999998754433332 2688899999998 688999999
Q ss_pred eCCCeEEEEeCCC
Q 025649 102 KGDGVVDVINIES 114 (250)
Q Consensus 102 ~~d~~i~~~d~~~ 114 (250)
++||.+--||..+
T Consensus 243 sedGslw~wdas~ 255 (319)
T KOG4714|consen 243 SEDGSLWHWDAST 255 (319)
T ss_pred cCCCcEEEEcCCC
Confidence 9999999999885
No 277
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=4.4e-09 Score=79.60 Aligned_cols=164 Identities=12% Similarity=0.017 Sum_probs=120.1
Q ss_pred CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc--eeEEEeeeeee
Q 025649 72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN--IRDAEMEILDQ 149 (250)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 149 (250)
.+..|++-|..+.|+. .|..|++|+.|..|.+||...+.....+...+...+....|-|.. +.++ ....++
T Consensus 137 kL~~H~GcVntV~FN~------~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~-~~s~dg 209 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQ------RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIV-TSSRDG 209 (559)
T ss_pred cccCCCCccceeeecc------cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCce-eccccC
Confidence 3444788899999997 999999999999999999999988888888877778777787743 2333 222222
Q ss_pred ccC-------eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC--
Q 025649 150 SGG-------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-- 220 (250)
Q Consensus 150 ~~~-------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-- 220 (250)
... ...+....+..|.++|..++.-|.+| .-|.+++.|+.+.-+|++..... ..+.....+..
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa------~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPA------EKFVCREADEKER 281 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCcc------ceeeeeccCCccc
Confidence 211 11222345567999999999996544 56889999999999999986432 22223334444
Q ss_pred -ceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 221 -KVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 221 -~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
..++++..|.+...+++|+.|..+++||.+
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R 312 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQR 312 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhccc
Confidence 467888898777789999999999999864
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=6.4e-09 Score=90.07 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=117.2
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC---e
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG---K 153 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 153 (250)
-..+.++.-+| ..-+.++|++||.+++|....++.+..........+..+.|+.+|+.+. +...|+... .
T Consensus 2208 v~~v~r~~sHp------~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~-i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2208 VENVRRMTSHP------SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFG-IVDGDGDLSLWQA 2280 (2439)
T ss_pred cCceeeecCCC------CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCcee-eeccCCceeeccc
Confidence 34567777777 7778899999999999999999888877776668899999999998877 333333221 1
Q ss_pred eeeeeccccCccccEEEEEeecCCCCCcEEEEee---CCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCC
Q 025649 154 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT 230 (250)
Q Consensus 154 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 230 (250)
..++....+.|........|- . ..+++++ .++.+.+||....... .++. ..|.+.++.+++.|
T Consensus 2281 ~pk~~~s~qchnk~~~Df~Fi---~--s~~~tag~s~d~~n~~lwDtl~~~~~------s~v~--~~H~~gaT~l~~~P- 2346 (2439)
T KOG1064|consen 2281 SPKPYTSWQCHNKALSDFRFI---G--SLLATAGRSSDNRNVCLWDTLLPPMN------SLVH--TCHDGGATVLAYAP- 2346 (2439)
T ss_pred CCcceeccccCCccccceeee---e--hhhhccccCCCCCcccchhcccCccc------ceee--eecCCCceEEEEcC-
Confidence 244556677888888888887 3 5677654 4789999997654211 2333 78999999999998
Q ss_pred CCCeEEEeeCCceEEEEeCC
Q 025649 231 ESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 231 ~~~~l~s~~~d~~i~vw~~~ 250 (250)
..+.|++||.+|.|++||++
T Consensus 2347 ~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred cceEEEecCCcCcEEEeehH
Confidence 77899999999999999974
No 279
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=3.7e-09 Score=76.82 Aligned_cols=157 Identities=10% Similarity=0.119 Sum_probs=105.8
Q ss_pred EEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeE
Q 025649 28 QFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 107 (250)
Q Consensus 28 ~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i 107 (250)
+|+-+-..+-++.+.+..|-+-|+++|-.. .|. ....|.++.|.. .++++..|+.+|.|
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~--------------sksDVfAlQf~~------s~nLv~~GcRngeI 276 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQ--------------SKSDVFALQFAG------SDNLVFNGCRNGEI 276 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccccc-ccc--------------cchhHHHHHhcc------cCCeeEecccCCcE
Confidence 555332223356666777888888776432 222 245678888876 78999999999999
Q ss_pred EEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEee
Q 025649 108 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 187 (250)
Q Consensus 108 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~ 187 (250)
..+|++.... ....+...+ -|...|+++..-. -++++|++.+
T Consensus 277 ~~iDLR~rnq-----------------------------------G~~~~a~rl-yh~Ssvtslq~Lq--~s~q~LmaS~ 318 (425)
T KOG2695|consen 277 FVIDLRCRNQ-----------------------------------GNGWCAQRL-YHDSSVTSLQILQ--FSQQKLMASD 318 (425)
T ss_pred EEEEeeeccc-----------------------------------CCCcceEEE-EcCcchhhhhhhc--cccceEeecc
Confidence 9999996410 001111122 3778888887762 2678999999
Q ss_pred CCCeEEEEecCCCcceecccccceeeeeeccCCceeEE--EecCCCCCeEEEeeCCceEEEEeCC
Q 025649 188 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL--CTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 188 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.+|+|++||++-.++. .-+..+.+|.+.-.-+ -..+ ....+++++.|...++|.+.
T Consensus 319 M~gkikLyD~R~~K~~------~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 319 MTGKIKLYDLRATKCK------KSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred CcCceeEeeehhhhcc------cceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecc
Confidence 9999999999986432 2356777886543322 2334 44578889999999999863
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.96 E-value=2.6e-07 Score=65.26 Aligned_cols=185 Identities=9% Similarity=-0.091 Sum_probs=110.1
Q ss_pred EEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeE
Q 025649 3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA 82 (250)
Q Consensus 3 ~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (250)
.+|...+++....+-..|...|+-+.=..+.+.-+..++.|.++++.++.-+......... .-.+.+
T Consensus 97 d~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~-------------~~~~ns 163 (344)
T KOG4532|consen 97 DLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ-------------NLTQNS 163 (344)
T ss_pred eeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc-------------ccceee
Confidence 3555554443322221444444433323333335777888889998888654333222211 123778
Q ss_pred EecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeecccc
Q 025649 83 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG 162 (250)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (250)
+.+++ +++++++.+....|-+|.+...... +. .+ ...
T Consensus 164 ~~~sn------d~~~~~~Vgds~~Vf~y~id~~sey----------------------~~--------------~~-~~a 200 (344)
T KOG4532|consen 164 LHYSN------DPSWGSSVGDSRRVFRYAIDDESEY----------------------IE--------------NI-YEA 200 (344)
T ss_pred eEEcC------CCceEEEecCCCcceEEEeCCccce----------------------ee--------------ee-Eec
Confidence 88888 9999999998899999888752211 00 00 111
Q ss_pred CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC-CeEEEeeCC
Q 025649 163 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES-ENLVVCDTS 241 (250)
Q Consensus 163 ~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d 241 (250)
.-...-.+..|+ .+...+|+++.||++.|||++....+.. +.-.....|.+.+..+.|++... .+|+-.-.-
T Consensus 201 ~t~D~gF~~S~s---~~~~~FAv~~Qdg~~~I~DVR~~~tpm~----~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhf 273 (344)
T KOG4532|consen 201 PTSDHGFYNSFS---ENDLQFAVVFQDGTCAIYDVRNMATPMA----EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHF 273 (344)
T ss_pred ccCCCceeeeec---cCcceEEEEecCCcEEEEEecccccchh----hhcccCCCCCCceEEEEecCCCcceEEEEecCc
Confidence 122333677888 8888999999999999999998644321 11122335788899999986222 134444445
Q ss_pred ceEEEEeCC
Q 025649 242 KVVKVYSIS 250 (250)
Q Consensus 242 ~~i~vw~~~ 250 (250)
+.+.+-|++
T Consensus 274 s~~hv~D~R 282 (344)
T KOG4532|consen 274 SRVHVVDTR 282 (344)
T ss_pred ceEEEEEcc
Confidence 556666653
No 281
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=7e-08 Score=74.45 Aligned_cols=129 Identities=15% Similarity=0.244 Sum_probs=91.6
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEE--ecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVIS--GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s--~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+.+.+++.......|. -.++|.++.|+|+++ -++. |-.--.+.|+|++ +.++..+. ..+
T Consensus 253 Lyll~t~g~s~~V~L~--k~GPVhdv~W~~s~~-EF~VvyGfMPAkvtifnlr-~~~v~df~---------------egp 313 (566)
T KOG2315|consen 253 LYLLATQGESVSVPLL--KEGPVHDVTWSPSGR-EFAVVYGFMPAKVTIFNLR-GKPVFDFP---------------EGP 313 (566)
T ss_pred EEEEEecCceEEEecC--CCCCceEEEECCCCC-EEEEEEecccceEEEEcCC-CCEeEeCC---------------CCC
Confidence 4566665334444444 689999999999997 4544 4556789999985 66655554 346
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCC---CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeee
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH 156 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (250)
-+++-|+| .|++|+.++-+ |.+-+||+.+.+.+
T Consensus 314 RN~~~fnp------~g~ii~lAGFGNL~G~mEvwDv~n~K~i-------------------------------------- 349 (566)
T KOG2315|consen 314 RNTAFFNP------HGNIILLAGFGNLPGDMEVWDVPNRKLI-------------------------------------- 349 (566)
T ss_pred ccceEECC------CCCEEEEeecCCCCCceEEEeccchhhc--------------------------------------
Confidence 67889998 99999888754 78999999874432
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEee------CCCeEEEEecCCC
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGG------NDKLVKVWDCSRF 200 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~------~d~~i~iwd~~~~ 200 (250)
..+..- .-+-+.|+ |+|++|+|+. .|+.++||+....
T Consensus 350 --~~~~a~--~tt~~eW~---PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 350 --AKFKAA--NTTVFEWS---PDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred --cccccC--CceEEEEc---CCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 233322 23456888 8999998875 4788999998763
No 282
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.90 E-value=2e-06 Score=65.21 Aligned_cols=195 Identities=11% Similarity=0.017 Sum_probs=115.6
Q ss_pred CcEEEEcccceeeeeeccCC------CCCeeeEEEcCCCCeEEEEecC-CCeEEEEEccCCCCccceecCCCC------C
Q 025649 1 MWQIIDIRQHCLYKSLRAGH------SSICSSVQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPE------N 67 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h------~~~v~~l~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~~------~ 67 (250)
.|.+||+.+++.+..+..+- ...-..++++|+|++++++--. +..|.+.|+.+++.+..+..+... .
T Consensus 78 ~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e 157 (352)
T TIGR02658 78 YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN 157 (352)
T ss_pred EEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC
Confidence 37899999999998887211 1123488999999944444434 899999999998887776643210 0
Q ss_pred CCCCCcccCCC------------ceeEEec----------CCCcccCCCCCEEEEEeCCCeEEEEeCCCce-----eEee
Q 025649 68 NGNAGQCYNPA------------FVHAIAI----------PDADMLDKTNKICVVAKGDGVVDVINIESEL-----NISR 120 (250)
Q Consensus 68 ~~~~~~~~~~~------------~v~~~~~----------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~ 120 (250)
......|.... ......+ .| .+...+++++.+... |.|.+.|+.... ....
T Consensus 158 ~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 158 DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeee
Confidence 00000011000 0111111 11 112237777777766 999999965422 1111
Q ss_pred ccCC------CCCCccceeecccceeEEEee-------------eeeeccCeeeeeeccccCccccEEEEEeecCCCCCc
Q 025649 121 SKST------TKPLKGSQSTSKVNIRDAEME-------------ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181 (250)
Q Consensus 121 ~~~~------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 181 (250)
+... ......-++++|+++.+.... .....+....+.+..+.. ...+..++++ |+++
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS---~Dgk 311 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVS---QDAK 311 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEEC---CCCC
Confidence 1111 112333499999998887422 122223344444555543 3468899999 8998
Q ss_pred -EEEEee-CCCeEEEEecCCCc
Q 025649 182 -YLISGG-NDKLVKVWDCSRFQ 201 (250)
Q Consensus 182 -~l~s~~-~d~~i~iwd~~~~~ 201 (250)
+|++.+ .++.|.++|..+++
T Consensus 312 p~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 312 PLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred eEEEEeCCCCCcEEEEECcCCe
Confidence 777666 57889999999983
No 283
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.9e-07 Score=72.28 Aligned_cols=208 Identities=11% Similarity=-0.015 Sum_probs=115.6
Q ss_pred cEEEEcccceeeeeeccCCCC---CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSS---ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~---~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+.|||+.+|.+.+.|. .-.+ .---..||.|++ ++|--.. ..|.||+..+..++..-.. ...
T Consensus 284 l~IWDI~tG~lkrsF~-~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~lld~Ksl-------------ki~ 347 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFP-VIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFMLLDKKSL-------------KIS 347 (698)
T ss_pred EEEEEccccchhccee-ccCCCccccceEEeccCCc-eeEEecc-ceEEEEecCceeeeccccc-------------CCc
Confidence 6899999999998887 4222 223567999998 7776555 5789998765332211111 122
Q ss_pred ceeEEecCCC-----------------------------------------cccCCCCCEEEEEe----------CCCeE
Q 025649 79 FVHAIAIPDA-----------------------------------------DMLDKTNKICVVAK----------GDGVV 107 (250)
Q Consensus 79 ~v~~~~~~~~-----------------------------------------~~~~~~~~~l~~~~----------~d~~i 107 (250)
.|....|+|. .++..+|.+|+.-- .-..+
T Consensus 348 gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~ 427 (698)
T KOG2314|consen 348 GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNL 427 (698)
T ss_pred cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeE
Confidence 3444444441 01112334443220 01123
Q ss_pred EEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC----------eeeeeeccccCccccEEEEEeecCC
Q 025649 108 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG----------KRLHLDYSVGGHTAAASCVAFSMFG 177 (250)
Q Consensus 108 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~h~~~v~~~~~~p~~ 177 (250)
.|+.++........ ...+..+...+|.|.|..++.+........ .....+..+.. ...+.+.|+
T Consensus 428 eIfrireKdIpve~-velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfws--- 501 (698)
T KOG2314|consen 428 EIFRIREKDIPVEV-VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWS--- 501 (698)
T ss_pred EEEEeeccCCCcee-eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEc---
Confidence 33333332221111 112356677889999998886443333221 12223334432 456789999
Q ss_pred CCCcEEEEe---eCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC
Q 025649 178 ERGKYLISG---GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 241 (250)
Q Consensus 178 ~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 241 (250)
|.|++++.+ |..|.+.++|+.... +......-....+.+.|.| .|+|+++++.-
T Consensus 502 PkG~fvvva~l~s~~g~l~F~D~~~a~---------~k~~~~~eh~~at~veWDP-tGRYvvT~ss~ 558 (698)
T KOG2314|consen 502 PKGRFVVVAALVSRRGDLEFYDTDYAD---------LKDTASPEHFAATEVEWDP-TGRYVVTSSSS 558 (698)
T ss_pred CCCcEEEEEEecccccceEEEecchhh---------hhhccCccccccccceECC-CCCEEEEeeeh
Confidence 899988775 457899999988631 1111111122356678998 89999998753
No 284
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.88 E-value=3e-06 Score=61.59 Aligned_cols=207 Identities=13% Similarity=0.026 Sum_probs=113.6
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEE--EcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQ--FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~--~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|..||..+|+.+.... - ........ ..+++. .+++++.++.|..||..+|+.+..+... .
T Consensus 4 ~l~~~d~~tG~~~W~~~-~-~~~~~~~~~~~~~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~~--------------~ 66 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD-L-GPGIGGPVATAVPDGG-RVYVASGDGNLYALDAKTGKVLWRFDLP--------------G 66 (238)
T ss_dssp EEEEEETTTTEEEEEEE-C-SSSCSSEEETEEEETT-EEEEEETTSEEEEEETTTSEEEEEEECS--------------S
T ss_pred EEEEEECCCCCEEEEEE-C-CCCCCCccceEEEeCC-EEEEEcCCCEEEEEECCCCCEEEEeecc--------------c
Confidence 47889999999998887 2 21122222 333455 6777789999999999999988888743 1
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec-cCCC-C-CCccceeecccceeEEEee---eeeeccC
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-KSTT-K-PLKGSQSTSKVNIRDAEME---ILDQSGG 152 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~~~~~---~~~~~~~ 152 (250)
.+...... .+..+++++.++.++.+|..+|+..... .... . ...........+..++... ..-..+.
T Consensus 67 ~~~~~~~~-------~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 67 PISGAPVV-------DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp CGGSGEEE-------ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred cccceeee-------cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence 11111111 4666777778889999999999988773 3221 1 1122223333344333111 1111122
Q ss_pred eeeeeeccccCccc----------cE-EEEEeecCCCCCcEEEEeeCCCe-EEEEecCCCcceecccccceeeeeeccCC
Q 025649 153 KRLHLDYSVGGHTA----------AA-SCVAFSMFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSINNDLLIKNINLNK 220 (250)
Q Consensus 153 ~~~~~~~~~~~h~~----------~v-~~~~~~p~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 220 (250)
...+.+........ .+ ..+.+ .++ .+..++.++. +.+ |+.++ +.+ .... ..
T Consensus 140 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~v~~~~~~g~~~~~-d~~tg---------~~~-w~~~-~~ 202 (238)
T PF13360_consen 140 KTGKLLWKYPVGEPRGSSPISSFSDINGSPVI----SDG-RVYVSSGDGRVVAV-DLATG---------EKL-WSKP-IS 202 (238)
T ss_dssp TTTEEEEEEESSTT-SS--EEEETTEEEEEEC----CTT-EEEEECCTSSEEEE-ETTTT---------EEE-EEEC-SS
T ss_pred CCCcEEEEeecCCCCCCcceeeecccccceEE----ECC-EEEEEcCCCeEEEE-ECCCC---------CEE-EEec-CC
Confidence 22222222222111 11 22222 345 5666666664 555 99998 322 1112 22
Q ss_pred ceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 221 KVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 221 ~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.+..+ ... ++..++.++.++.+..||++
T Consensus 203 ~~~~~-~~~-~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 203 GIYSL-PSV-DGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp -ECEC-EEC-CCTEEEEEETTTEEEEEETT
T ss_pred CccCC-cee-eCCEEEEEeCCCEEEEEECC
Confidence 33332 222 55677777799999999974
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=3.5e-06 Score=66.14 Aligned_cols=176 Identities=5% Similarity=-0.032 Sum_probs=100.3
Q ss_pred CeeeEEEcCCCCeEEEEecC---CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649 23 ICSSVQFIPWKPWEVISGGL---DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 99 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 99 (250)
....-.|+|+|+..++..+. +..|.++|+.+++....... +.......|+| ||+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~--------------~g~~~~~~~SP------DG~~la 248 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS--------------QGMLVVSDVSK------DGSKLL 248 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC--------------CCcEEeeEECC------CCCEEE
Confidence 67789999999842443332 45799999988765444331 24455678998 887665
Q ss_pred EE-eC--CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----c--Ceeeeeec-cccCccccEE
Q 025649 100 VA-KG--DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----G--GKRLHLDY-SVGGHTAAAS 169 (250)
Q Consensus 100 ~~-~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~-~~~~h~~~v~ 169 (250)
.. +. +..|.++|+.++......... .......|+|||+.++........ . ....+..+ ...+. .
T Consensus 249 ~~~~~~g~~~Iy~~dl~~g~~~~LT~~~--~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~ 322 (419)
T PRK04043 249 LTMAPKGQPDIYLYDTNTKTLTQITNYP--GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----N 322 (419)
T ss_pred EEEccCCCcEEEEEECCCCcEEEcccCC--CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----c
Confidence 44 33 457888898877643322221 234456899999888743221110 0 00111100 11111 1
Q ss_pred EEEeecCCCCCcEEEEeeCC---------CeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649 170 CVAFSMFGERGKYLISGGND---------KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 239 (250)
Q Consensus 170 ~~~~~p~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 239 (250)
...|+ |+|++++..+.. ..|.+.|+.++... .+... .......|+| ||+.|+...
T Consensus 323 ~~~~S---PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~----------~LT~~-~~~~~p~~SP-DG~~I~f~~ 386 (419)
T PRK04043 323 NSSVS---TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR----------RLTAN-GVNQFPRFSS-DGGSIMFIK 386 (419)
T ss_pred CceEC---CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE----------ECCCC-CCcCCeEECC-CCCEEEEEE
Confidence 23788 899988766543 36888888876321 11111 1222467887 888765544
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.9e-08 Score=77.93 Aligned_cols=177 Identities=12% Similarity=0.075 Sum_probs=115.8
Q ss_pred CcEEEEcc-------cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649 1 MWQIIDIR-------QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 1 ti~iwd~~-------~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 73 (250)
||++|.++ |..+..+++ .|+.+|.++.|..+.+ +++++ ||-|.+||.--++.+..+.-.. . .
T Consensus 758 TVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr-~i~Sc--D~giHlWDPFigr~Laq~~dap-k--~---- 826 (1034)
T KOG4190|consen 758 TVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLR-SIASC--DGGIHLWDPFIGRLLAQMEDAP-K--E---- 826 (1034)
T ss_pred eEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccc-eeeec--cCcceeecccccchhHhhhcCc-c--c----
Confidence 78999986 234667788 9999999999999987 66654 7899999998888776443110 0 0
Q ss_pred ccCCCceeEEecCCCcccCCCCCEEEEE-eCCCeEEEEeCCCceeEeeccCC----CCCCccceeecccceeEEE---ee
Q 025649 74 CYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKST----TKPLKGSQSTSKVNIRDAE---ME 145 (250)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~ 145 (250)
.....|.++.-- +..++..| +...+|+++|.+........+.. ....+.+++..+.|+.++. .|
T Consensus 827 -~a~~~ikcl~nv-------~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG 898 (1034)
T KOG4190|consen 827 -GAGGNIKCLENV-------DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG 898 (1034)
T ss_pred -CCCceeEecccC-------cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCC
Confidence 011234443221 34444444 78899999999987655443322 2356788999999998873 33
Q ss_pred eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEE-EecCCC
Q 025649 146 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV-WDCSRF 200 (250)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~i-wd~~~~ 200 (250)
.....+.+..+.+..++........++- |..+.++....|.++.+ |..-.+
T Consensus 899 ci~~LDaR~G~vINswrpmecdllqlaa----psdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 899 CIAILDARNGKVINSWRPMECDLLQLAA----PSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred cEEEEecCCCceeccCCcccchhhhhcC----chhHHHHhhcccceeEeeehhcCC
Confidence 3333344444444455444444444442 56678888888999988 876665
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=1.8e-08 Score=80.40 Aligned_cols=202 Identities=12% Similarity=0.081 Sum_probs=131.7
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
-.+++..+..+|.|+ -++.++.-|- .+-|+.. +.+.+-+.-- .+-.+-...|+| ++...+-
T Consensus 23 v~~~~~a~si~p~gr-di~lAsr~gl-~i~dld~p~~ppr~l~h~------------tpw~vad~qws~----h~a~~~w 84 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGR-DIVLASRQGL-YIIDLDDPFTPPRWLHHI------------TPWQVADVQWSP----HPAKPYW 84 (1081)
T ss_pred ecCcccceeeccccc-hhhhhhhcCe-EEEeccCCCCCceeeecc------------Ccchhcceeccc----CCCCcee
Confidence 456788999999998 6888887664 4456654 3333333211 234556677777 2233444
Q ss_pred EEEeCCCeEEEEeCCC--ceeEeeccCCCCCCccceeecccceeEEEeeeeeec----cCe-eeeeeccccCccccEEEE
Q 025649 99 VVAKGDGVVDVINIES--ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGK-RLHLDYSVGGHTAAASCV 171 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~h~~~v~~~ 171 (250)
++......-.+|++.. .+.+......+...+..+.|+|+..-+......+.. +.. .-.++..+..-......|
T Consensus 85 iVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 85 IVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQV 164 (1081)
T ss_pred EEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCcee
Confidence 4444555567888764 333344444556788999999988777654433322 211 122334444444566889
Q ss_pred EeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 172 AFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 172 ~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+|+ .....+.+.+..+.|++||++.+. .++...++|...|+.+.|.......+.+++.||+|+.||.+
T Consensus 165 kwn---yk~p~vlasshg~~i~vwd~r~gs--------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 165 KWN---YKDPNVLASSHGNDIFVWDLRKGS--------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred eec---ccCcchhhhccCCceEEEeccCCC--------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 998 444455556667899999999985 56678888999999998876555568899999999999963
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.82 E-value=3.1e-08 Score=71.29 Aligned_cols=203 Identities=11% Similarity=0.073 Sum_probs=120.1
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC-Ccc----ceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-PNK----IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 94 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (250)
..+.|+++.|...|. +|++|...|.|.+|.-.... +.. .++.+.+ .-.....+--...|..+.|.. +..
T Consensus 25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~-EFDYLkSleieEKin~I~w~~----~t~ 98 (460)
T COG5170 25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL-EFDYLKSLEIEEKINAIEWFD----DTG 98 (460)
T ss_pred ccceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhccccc-chhhhhhccHHHHhhheeeec----CCC
Confidence 346799999999999 99999999999999865432 111 1221100 000111111223566666654 223
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeEeeccCC--------CCCCccce------eecccceeEEEeeeeeeccCeeeeeecc
Q 025649 95 NKICVVAKGDGVVDVINIESELNISRSKST--------TKPLKGSQ------STSKVNIRDAEMEILDQSGGKRLHLDYS 160 (250)
Q Consensus 95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (250)
...++..+.|.+|++|-+.........+.. .++++.+. ..+....+++ ..+.+.
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iia------------a~p~rv 166 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIA------------AKPCRV 166 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEE------------ecccee
Confidence 456777789999999999864332211111 11111110 0111111111 111112
Q ss_pred c-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-----CCceeEEEecCCCCCe
Q 025649 161 V-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-----NKKVNWLCTTPTESEN 234 (250)
Q Consensus 161 ~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~ 234 (250)
. ..|...|.++.|+ .+.+.++++. |=+|.+|++.-..... -+...+.| ...|++..|+|.....
T Consensus 167 yaNaH~yhiNSiS~N---sD~et~lSaD-dLrINLWnl~i~D~sF------nIVDiKP~nmeeLteVItSaeFhp~~cn~ 236 (460)
T COG5170 167 YANAHPYHINSISFN---SDKETLLSAD-DLRINLWNLEIIDGSF------NIVDIKPHNMEELTEVITSAEFHPEMCNV 236 (460)
T ss_pred ccccceeEeeeeeec---Cchheeeecc-ceeeeeccccccCCce------EEEeccCccHHHHHHHHhhcccCHhHcce
Confidence 2 5688889999998 7877777764 7899999987654321 12223333 3458888999977777
Q ss_pred EEEeeCCceEEEEeCC
Q 025649 235 LVVCDTSKVVKVYSIS 250 (250)
Q Consensus 235 l~s~~~d~~i~vw~~~ 250 (250)
+.-.+..|.|++-|++
T Consensus 237 fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 237 FMYSSSKGEIKLNDLR 252 (460)
T ss_pred EEEecCCCcEEehhhh
Confidence 8888889999998874
No 289
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.80 E-value=1.1e-06 Score=68.88 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=59.2
Q ss_pred ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCce
Q 025649 164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV 243 (250)
Q Consensus 164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 243 (250)
....|.|++++ |+...++.|+.||.|.+||...+.. ......-.++.++|+| +|.++++|+..|.
T Consensus 258 L~s~v~~ca~s---p~E~kLvlGC~DgSiiLyD~~~~~t-----------~~~ka~~~P~~iaWHp-~gai~~V~s~qGe 322 (545)
T PF11768_consen 258 LPSQVICCARS---PSEDKLVLGCEDGSIILYDTTRGVT-----------LLAKAEFIPTLIAWHP-DGAIFVVGSEQGE 322 (545)
T ss_pred cCCcceEEecC---cccceEEEEecCCeEEEEEcCCCee-----------eeeeecccceEEEEcC-CCcEEEEEcCCce
Confidence 55678999999 8999999999999999999988521 1223344578899998 8999999999999
Q ss_pred EEEEeC
Q 025649 244 VKVYSI 249 (250)
Q Consensus 244 i~vw~~ 249 (250)
+.+||+
T Consensus 323 lQ~FD~ 328 (545)
T PF11768_consen 323 LQCFDM 328 (545)
T ss_pred EEEEEe
Confidence 999997
No 290
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.7e-06 Score=67.28 Aligned_cols=211 Identities=13% Similarity=0.136 Sum_probs=122.5
Q ss_pred EEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC-----------CCeEEEEEccCCCCccceecCCCCCCCCC
Q 025649 3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL-----------DSKLVMWDFSKGRPNKIVNFGLPENNGNA 71 (250)
Q Consensus 3 ~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 71 (250)
.+|-=++...+++|. |. .|.-+.|||..+ +|+|=+. ...++|||+.+|...+.+....
T Consensus 234 ~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~------- 302 (698)
T KOG2314|consen 234 ALWGGESFDRIQRFY--HP-GVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIK------- 302 (698)
T ss_pred eeecCccHHHHHhcc--CC-CceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEccccchhcceeccC-------
Confidence 344433334445554 55 488999999999 8998653 2579999999999988887420
Q ss_pred CcccCCCcee-EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec
Q 025649 72 GQCYNPAFVH-AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 150 (250)
Q Consensus 72 ~~~~~~~~v~-~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (250)
.+..++ -..||- |++++|--.. ..|.||+..+.. +...+.-.-..|....|+|.+..|+...-....
T Consensus 303 ----~~~~~WP~frWS~------DdKy~Arm~~-~sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 303 ----SPYLKWPIFRWSH------DDKYFARMTG-NSISIYETPSFM-LLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred ----CCccccceEEecc------CCceeEEecc-ceEEEEecCcee-eecccccCCccccCcccCCCcceEEEEcccccC
Confidence 011121 245665 8888887766 669999988733 323333333688899999999998842111111
Q ss_pred --------cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEe----------eCCCeEEEEecCCCcceeccccccee
Q 025649 151 --------GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG----------GNDKLVKVWDCSRFQGVQTSINNDLL 212 (250)
Q Consensus 151 --------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~----------~~d~~i~iwd~~~~~~~~~~~~~~~~ 212 (250)
.....+.+++-.-|.-.=..+-|- .+|.+|+.- +.-..+-|+.++.. ...
T Consensus 371 ~parvtL~evPs~~~iRt~nlfnVsDckLhWQ---k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK---------dIp 438 (698)
T KOG2314|consen 371 IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ---KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK---------DIP 438 (698)
T ss_pred CcceEEEEecCccceeeeccceeeeccEEEec---cCCcEEEEEEEeeccccccceEeeEEEEEeecc---------CCC
Confidence 112222222222222111233444 677777642 11224556666654 333
Q ss_pred eeeeccCCceeEEEecCCCCCeEEEee-C--CceEEEEeC
Q 025649 213 IKNINLNKKVNWLCTTPTESENLVVCD-T--SKVVKVYSI 249 (250)
Q Consensus 213 ~~~~~~~~~v~~~~~~~~~~~~l~s~~-~--d~~i~vw~~ 249 (250)
.........|...+|-| .|..+++-+ . ..++.+|.+
T Consensus 439 ve~velke~vi~FaWEP-~gdkF~vi~g~~~k~tvsfY~~ 477 (698)
T KOG2314|consen 439 VEVVELKESVIAFAWEP-HGDKFAVISGNTVKNTVSFYAV 477 (698)
T ss_pred ceeeecchheeeeeecc-CCCeEEEEEccccccceeEEEe
Confidence 33445667888899998 565555432 2 245666643
No 291
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.70 E-value=9.9e-07 Score=72.31 Aligned_cols=172 Identities=9% Similarity=0.064 Sum_probs=114.3
Q ss_pred EEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeE
Q 025649 3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA 82 (250)
Q Consensus 3 ~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (250)
..+|+.+.+..+... -..+.|+=++. +++ ++.+|...|+|.+-|.++.+.++++..+ .+.+..
T Consensus 160 i~~Dl~~~~e~r~~~-v~a~~v~imR~--Nnr-~lf~G~t~G~V~LrD~~s~~~iht~~aH-------------s~siSD 222 (1118)
T KOG1275|consen 160 IHIDLNTEKETRTTN-VSASGVTIMRY--NNR-NLFCGDTRGTVFLRDPNSFETIHTFDAH-------------SGSISD 222 (1118)
T ss_pred eeeecccceeeeeee-ccCCceEEEEe--cCc-EEEeecccceEEeecCCcCceeeeeecc-------------ccceee
Confidence 346676766665555 33334555543 445 8999999999999999999999999844 667776
Q ss_pred EecCCCcccCCCCCEEEEEeC---------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCe
Q 025649 83 IAIPDADMLDKTNKICVVAKG---------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK 153 (250)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (250)
+.. .|+.|++++. |..|+|||++.-+.+.
T Consensus 223 fDv--------~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~---------------------------------- 260 (1118)
T KOG1275|consen 223 FDV--------QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS---------------------------------- 260 (1118)
T ss_pred eec--------cCCeEEEeecccccccccccchhhhhhhhhhhccC----------------------------------
Confidence 655 4788888865 5567888888643221
Q ss_pred eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC
Q 025649 154 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 233 (250)
Q Consensus 154 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 233 (250)
.+.-+.++ .-+.|.| .-...++.++..|...+-|..+..... .-......-...+..+.+++ +++
T Consensus 261 ------PI~~~~~P-~flrf~P--sl~t~~~V~S~sGq~q~vd~~~lsNP~-----~~~~~v~p~~s~i~~fDiSs-n~~ 325 (1118)
T KOG1275|consen 261 ------PIQFPYGP-QFLRFHP--SLTTRLAVTSQSGQFQFVDTATLSNPP-----AGVKMVNPNGSGISAFDISS-NGD 325 (1118)
T ss_pred ------CcccccCc-hhhhhcc--cccceEEEEecccceeeccccccCCCc-----cceeEEccCCCcceeEEecC-CCc
Confidence 12222222 3456675 223567778888999999855443210 11112222334488899997 899
Q ss_pred eEEEeeCCceEEEEe
Q 025649 234 NLVVCDTSKVVKVYS 248 (250)
Q Consensus 234 ~l~s~~~d~~i~vw~ 248 (250)
.|+.|..+|.|.+|-
T Consensus 326 alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 326 ALAFGDHEGHVNLWA 340 (1118)
T ss_pred eEEEecccCcEeeec
Confidence 999999999999994
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=1.3e-05 Score=63.12 Aligned_cols=168 Identities=7% Similarity=-0.110 Sum_probs=95.1
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC--CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
|.++|+.+++...... ..+......|+|||+.++++.+.+ ..|.++|+.+++.. .+... +..
T Consensus 215 Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~-------------~~~ 278 (419)
T PRK04043 215 LYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNY-------------PGI 278 (419)
T ss_pred EEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccC-------------CCc
Confidence 6788888876643333 455566788999998555565544 46777788766533 33211 122
Q ss_pred eeEEecCCCcccCCCCCEEEEEeC-CC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee--------
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKG-DG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-------- 148 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 148 (250)
.....|+| ||+.|+..+. .+ .|.+.|+.++......... . ....|+|+|+.++......
T Consensus 279 d~~p~~SP------DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g--~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~ 348 (419)
T PRK04043 279 DVNGNFVE------DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG--K--NNSSVSTYKNYIVYSSRETNNEFGKNT 348 (419)
T ss_pred cCccEECC------CCCEEEEEECCCCCceEEEEECCCCCeEeCccCC--C--cCceECCCCCEEEEEEcCCCcccCCCC
Confidence 23457888 8987766653 23 6788888877654332221 1 1248999999998543321
Q ss_pred --ecc--CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC-C--eEEEEecCCC
Q 025649 149 --QSG--GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-K--LVKVWDCSRF 200 (250)
Q Consensus 149 --~~~--~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d-~--~i~iwd~~~~ 200 (250)
... ..... ...+... .......|+ |+|+.++..+.+ + .+.+.++...
T Consensus 349 ~~I~v~d~~~g~-~~~LT~~-~~~~~p~~S---PDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 349 FNLYLISTNSDY-IRRLTAN-GVNQFPRFS---SDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred cEEEEEECCCCC-eEECCCC-CCcCCeEEC---CCCCEEEEEEccCCcEEEEEEecCCC
Confidence 110 00000 1122211 122346788 899877665532 2 3566666553
No 293
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.67 E-value=1.9e-05 Score=61.66 Aligned_cols=210 Identities=11% Similarity=0.044 Sum_probs=109.5
Q ss_pred cEEEEcccceeeeeeccCCCCCee-----eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICS-----SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~-----~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
|..||.++|+.+.+++ .....+. ..... +. .++.+..+|.+..+|.++|+.+.......+.... .
T Consensus 157 l~a~d~~tG~~~W~~~-~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~------~ 226 (377)
T TIGR03300 157 LTALDAATGERLWTYS-RVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRT------E 226 (377)
T ss_pred EEEEEcCCCceeeEEc-cCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCC------c
Confidence 5678888888877776 3222111 11111 23 5778888999999999999877655432110000 0
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE-Ee--eeeeeccCe
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA-EM--EILDQSGGK 153 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~ 153 (250)
......+.-+|. ..+..+++++.+|.+..+|.++++........ ....... .+..+. .. +..-..+..
T Consensus 227 ~~~~~~~~~~p~----~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~~~~p~~--~~~~vyv~~~~G~l~~~d~~ 297 (377)
T TIGR03300 227 LERLVDVDGDPV----VDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS---SYQGPAV--DDNRLYVTDADGVVVALDRR 297 (377)
T ss_pred hhhhhccCCccE----EECCEEEEEEcCCEEEEEECCCCcEEEeeccC---CccCceE--eCCEEEEECCCCeEEEEECC
Confidence 000011111121 03557778888999999999998876554421 1111111 222222 11 100001111
Q ss_pred eeeeeccccCccc-cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeE-EEecCCC
Q 025649 154 RLHLDYSVGGHTA-AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTE 231 (250)
Q Consensus 154 ~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~ 231 (250)
..+.+........ ...+... .+..+++++.+|.|+++|..++ +.+.....+...+.. .++. +
T Consensus 298 tG~~~W~~~~~~~~~~ssp~i-----~g~~l~~~~~~G~l~~~d~~tG---------~~~~~~~~~~~~~~~sp~~~--~ 361 (377)
T TIGR03300 298 SGSELWKNDELKYRQLTAPAV-----VGGYLVVGDFEGYLHWLSREDG---------SFVARLKTDGSGIASPPVVV--G 361 (377)
T ss_pred CCcEEEccccccCCccccCEE-----ECCEEEEEeCCCEEEEEECCCC---------CEEEEEEcCCCccccCCEEE--C
Confidence 1122222211111 1111111 3568888999999999999998 454444444433322 2232 4
Q ss_pred CCeEEEeeCCceEEEE
Q 025649 232 SENLVVCDTSKVVKVY 247 (250)
Q Consensus 232 ~~~l~s~~~d~~i~vw 247 (250)
+ .|+.++.||.|..+
T Consensus 362 ~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 D-GLLVQTRDGDLYAF 376 (377)
T ss_pred C-EEEEEeCCceEEEe
Confidence 4 58889999998765
No 294
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.7e-06 Score=68.81 Aligned_cols=151 Identities=17% Similarity=0.133 Sum_probs=94.2
Q ss_pred CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEe
Q 025649 32 WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 111 (250)
Q Consensus 32 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d 111 (250)
+|+ +++|||.||+|.|-.+.+.+....+.++ .++.+++++|- +.-...+.+++|+.-| +.++.
T Consensus 82 ~Ge-y~asCS~DGkv~I~sl~~~~~~~~~df~--------------rpiksial~Pd-~~~~~sk~fv~GG~ag-lvL~e 144 (846)
T KOG2066|consen 82 EGE-YVASCSDDGKVVIGSLFTDDEITQYDFK--------------RPIKSIALHPD-FSRQQSKQFVSGGMAG-LVLSE 144 (846)
T ss_pred CCc-eEEEecCCCcEEEeeccCCccceeEecC--------------CcceeEEeccc-hhhhhhhheeecCcce-EEEeh
Confidence 488 8999999999999999888887777755 67889999981 0001367888888877 66664
Q ss_pred CCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCe
Q 025649 112 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 191 (250)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~ 191 (250)
-+-- ++... ..+....++|.++.|. |+++|-++.+ -
T Consensus 145 r~wl------------------------------------gnk~~--v~l~~~eG~I~~i~W~-----g~lIAWand~-G 180 (846)
T KOG2066|consen 145 RNWL------------------------------------GNKDS--VVLSEGEGPIHSIKWR-----GNLIAWANDD-G 180 (846)
T ss_pred hhhh------------------------------------cCccc--eeeecCccceEEEEec-----CcEEEEecCC-C
Confidence 3310 00000 0234456899999996 6888888755 5
Q ss_pred EEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 192 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 192 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
|++||....+.......+. ...-.......+.|.+ ...++.|= ..+|+|..+
T Consensus 181 v~vyd~~~~~~l~~i~~p~---~~~R~e~fpphl~W~~--~~~LVIGW-~d~v~i~~I 232 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPS---QSVRPELFPPHLHWQD--EDRLVIGW-GDSVKICSI 232 (846)
T ss_pred cEEEeccccceeeccCCCC---CCCCcccCCCceEecC--CCeEEEec-CCeEEEEEE
Confidence 8999999975543221111 0011112234567764 23455443 335666544
No 295
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=7.8e-07 Score=71.24 Aligned_cols=213 Identities=13% Similarity=0.059 Sum_probs=133.5
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec-CCCCCC-CCCCcccCCCceeEEecCCCcccCCCCCE
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF-GLPENN-GNAGQCYNPAFVHAIAIPDADMLDKTNKI 97 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (250)
......|++|+.... +++.|+.||.+++-.+.+...-...+. ..+.+. -+..+..|...|.-+.|+. +.+.
T Consensus 13 nnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe------~~QK 85 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE------NNQK 85 (1189)
T ss_pred CCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc------cccc
Confidence 345688999999888 999999999999998875432211110 000111 1234556889999999997 8889
Q ss_pred EEEEeCCCeEEEEeCCCceeEee-ccCCCCCCccceeecccceeEEEeeeeeecc------CeeeeeeccccCccccEEE
Q 025649 98 CVVAKGDGVVDVINIESELNISR-SKSTTKPLKGSQSTSKVNIRDAEMEILDQSG------GKRLHLDYSVGGHTAAASC 170 (250)
Q Consensus 98 l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~h~~~v~~ 170 (250)
|-++..+|.|.+|-+-.+..... +....+..+.+++|+.||..++ +...|+.. +++. .-+.+++ .....
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIc-IvYeDGavIVGsvdGNRI-wgKeLkg--~~l~h 161 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKIC-IVYEDGAVIVGSVDGNRI-WGKELKG--QLLAH 161 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEE-EEEccCCEEEEeecccee-cchhcch--heccc
Confidence 99999999999999988775543 3444557899999999999887 33333321 1110 0112222 22347
Q ss_pred EEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccc--ceeeeeeccCCceeEEEec-------CCCCCeEEEeeCC
Q 025649 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN--DLLIKNINLNKKVNWLCTT-------PTESENLVVCDTS 241 (250)
Q Consensus 171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~-------~~~~~~l~s~~~d 241 (250)
+.|+ ++.+.++.+-..|.+.++|.+..-........ .....+......+..+.|. |+|...|+.+-.+
T Consensus 162 v~ws---~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 162 VLWS---EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred eeec---ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 8899 88888888888999999997653211100000 0000111112234455554 3455567887777
Q ss_pred ceEEE
Q 025649 242 KVVKV 246 (250)
Q Consensus 242 ~~i~v 246 (250)
|.+.+
T Consensus 239 Gr~Qi 243 (1189)
T KOG2041|consen 239 GRMQI 243 (1189)
T ss_pred ceehh
Confidence 77654
No 296
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=7.9e-07 Score=71.22 Aligned_cols=196 Identities=10% Similarity=0.055 Sum_probs=123.9
Q ss_pred eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649 13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD 92 (250)
Q Consensus 13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 92 (250)
-+++. ||...|.-+.|+...+ .|-|...+|.|.+|-+-.|.....+.... ....|.++.|+.
T Consensus 64 NQtLe-GH~~sV~vvTWNe~~Q-KLTtSDt~GlIiVWmlykgsW~EEMiNnR-----------nKSvV~SmsWn~----- 125 (1189)
T KOG2041|consen 64 NQTLE-GHNASVMVVTWNENNQ-KLTTSDTSGLIIVWMLYKGSWCEEMINNR-----------NKSVVVSMSWNL----- 125 (1189)
T ss_pred hhhhc-cCcceEEEEEeccccc-cccccCCCceEEEEeeecccHHHHHhhCc-----------CccEEEEEEEcC-----
Confidence 35677 9999999999999988 89999999999999998887655443221 356789999998
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----cCe-------eeeee---
Q 025649 93 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGK-------RLHLD--- 158 (250)
Q Consensus 93 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------~~~~~--- 158 (250)
+|..++....||.|.+=.++..+.-..... ......+.|++|.+.++. +..++. +.+ ...+.
T Consensus 126 -dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf-~~ange~hlydnqgnF~~Kl~~~c~Vn~ 201 (1189)
T KOG2041|consen 126 -DGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQALF-KKANGETHLYDNQGNFERKLEKDCEVNG 201 (1189)
T ss_pred -CCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHHHHh-hhcCCcEEEecccccHHHhhhhceEEee
Confidence 999999999999998877765443211111 134456788888766541 111110 000 00000
Q ss_pred -ccccCccccEEEEEee-----cCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649 159 -YSVGGHTAAASCVAFS-----MFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 159 -~~~~~h~~~v~~~~~~-----p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
..+......|..+.|. |.-|+...|+.+-..|.+.|-.-.+.. ++ ......-.+....|++ +|
T Consensus 202 tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~--------~P--vv~dtgm~~vgakWnh-~G 270 (1189)
T KOG2041|consen 202 TGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP--------EP--VVVDTGMKIVGAKWNH-NG 270 (1189)
T ss_pred eeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC--------CC--eEEecccEeecceecC-CC
Confidence 0011111123333331 111677889999999988887655532 22 2223335677788887 88
Q ss_pred CeEEEeeCC
Q 025649 233 ENLVVCDTS 241 (250)
Q Consensus 233 ~~l~s~~~d 241 (250)
..|+.++.+
T Consensus 271 ~vLAvcG~~ 279 (1189)
T KOG2041|consen 271 AVLAVCGND 279 (1189)
T ss_pred cEEEEccCc
Confidence 888887754
No 297
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.64 E-value=7.1e-06 Score=62.83 Aligned_cols=118 Identities=15% Similarity=0.124 Sum_probs=89.8
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCC-eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDS-KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI 97 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (250)
+|...|.-..+..+++ -++.|..|| .+-++|.++++..+... .-..|.++..+| +|+.
T Consensus 357 ~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e~kr~e~--------------~lg~I~av~vs~------dGK~ 415 (668)
T COG4946 357 GKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGEVKRIEK--------------DLGNIEAVKVSP------DGKK 415 (668)
T ss_pred CCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCceEEEeeC--------------CccceEEEEEcC------CCcE
Confidence 6778888888888888 789999999 89999999877544433 246799999998 9999
Q ss_pred EEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCC
Q 025649 98 CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG 177 (250)
Q Consensus 98 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 177 (250)
++++.....|.++|+.++.....- +...+-|+...|+
T Consensus 416 ~vvaNdr~el~vididngnv~~id----------------------------------------kS~~~lItdf~~~--- 452 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVRLID----------------------------------------KSEYGLITDFDWH--- 452 (668)
T ss_pred EEEEcCceEEEEEEecCCCeeEec----------------------------------------ccccceeEEEEEc---
Confidence 999999999999999987643221 1223456777777
Q ss_pred CCCcEEEEeeCCC----eEEEEecCCC
Q 025649 178 ERGKYLISGGNDK----LVKVWDCSRF 200 (250)
Q Consensus 178 ~~~~~l~s~~~d~----~i~iwd~~~~ 200 (250)
|+++++|-+--+| .|+++|+..+
T Consensus 453 ~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 453 PNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred CCceeEEEecCcceeeeeEEEEecCCC
Confidence 6777777665444 6788888776
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.61 E-value=8e-05 Score=54.47 Aligned_cols=182 Identities=12% Similarity=0.049 Sum_probs=106.7
Q ss_pred eeeEEEc-CCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649 24 CSSVQFI-PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 102 (250)
Q Consensus 24 v~~l~~~-~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 102 (250)
...+++. +++. |+.+...+ +.++|+.+++......... ........+.+++.| +|++.++..
T Consensus 42 ~~G~~~~~~~g~--l~v~~~~~-~~~~d~~~g~~~~~~~~~~--------~~~~~~~~ND~~vd~------~G~ly~t~~ 104 (246)
T PF08450_consen 42 PNGMAFDRPDGR--LYVADSGG-IAVVDPDTGKVTVLADLPD--------GGVPFNRPNDVAVDP------DGNLYVTDS 104 (246)
T ss_dssp EEEEEEECTTSE--EEEEETTC-EEEEETTTTEEEEEEEEET--------TCSCTEEEEEEEE-T------TS-EEEEEE
T ss_pred CceEEEEccCCE--EEEEEcCc-eEEEecCCCcEEEEeeccC--------CCcccCCCceEEEcC------CCCEEEEec
Confidence 5677777 6654 55555544 4555988875444333210 000134568899998 898777765
Q ss_pred CC--------CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-------eeeecc-C---eeeeeeccccC
Q 025649 103 GD--------GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-------ILDQSG-G---KRLHLDYSVGG 163 (250)
Q Consensus 103 ~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~---~~~~~~~~~~~ 163 (250)
.. |.|..++.. ++....... -.....++|+|+++.+.... ..+... . ...+....+..
T Consensus 105 ~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 181 (246)
T PF08450_consen 105 GGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG 181 (246)
T ss_dssp CCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS
T ss_pred CCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC
Confidence 43 567888887 443333222 25667899999998776321 122211 1 11222333343
Q ss_pred ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe-EEEe
Q 025649 164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN-LVVC 238 (250)
Q Consensus 164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~ 238 (250)
..+..-.+++. .+|++.++....+.|.++|.. + +++....-....+++++|.-++... ++|.
T Consensus 182 ~~g~pDG~~vD---~~G~l~va~~~~~~I~~~~p~-G---------~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 182 GPGYPDGLAVD---SDGNLWVADWGGGRIVVFDPD-G---------KLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSCEEEEEEEB---TTS-EEEEEETTTEEEEEETT-S---------CEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCcCCCcceEc---CCCCEEEEEcCCCEEEEECCC-c---------cEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 33457889999 899988888889999999988 5 4444444444588999995335444 4443
No 299
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.60 E-value=1.6e-05 Score=68.27 Aligned_cols=194 Identities=11% Similarity=0.088 Sum_probs=120.3
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEE----EccCCC--CccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMW----DFSKGR--PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 94 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iw----d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (250)
.+.|.++.+.++.. .++.+..+|.|.+. +..+.. .+..+ ...|.+++||| |
T Consensus 75 ~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v----------------d~GI~a~~WSP------D 131 (928)
T PF04762_consen 75 NDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEIVGSV----------------DSGILAASWSP------D 131 (928)
T ss_pred CCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEEEEEE----------------cCcEEEEEECC------C
Confidence 35788999999988 68888899999998 444332 23333 36799999999 9
Q ss_pred CCEEEEEeCCCeEEEEeCCC-------------c----------eeEeecc------------CC-----------CCCC
Q 025649 95 NKICVVAKGDGVVDVINIES-------------E----------LNISRSK------------ST-----------TKPL 128 (250)
Q Consensus 95 ~~~l~~~~~d~~i~~~d~~~-------------~----------~~~~~~~------------~~-----------~~~~ 128 (250)
+..|+....++++.+-+-.- + +....+. .+ ....
T Consensus 132 ~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~ 211 (928)
T PF04762_consen 132 EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDG 211 (928)
T ss_pred cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCC
Confidence 99999999998887753220 0 0000000 00 1123
Q ss_pred ccceeecccceeEEEeeeeeeccC--eeee-------eeccccCccccEEEEEeecCCCCCcEEEEeeC---CCeEEEEe
Q 025649 129 KGSQSTSKVNIRDAEMEILDQSGG--KRLH-------LDYSVGGHTAAASCVAFSMFGERGKYLISGGN---DKLVKVWD 196 (250)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~---d~~i~iwd 196 (250)
-..++|-.||.+++ +...+.... +..+ ....-+.-.+--.+++|. |.|+++|+... ...|.+|.
T Consensus 212 ~~~ISWRGDG~yFA-Vss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~Wr---PsG~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 212 RVRISWRGDGEYFA-VSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWR---PSGNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred ceEEEECCCCcEEE-EEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCC---CCCCEEEEEEEcCCCcEEEEEe
Confidence 45677899999999 444332222 1111 111111111222467888 89999998764 34677777
Q ss_pred cCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 197 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
-+....- +..-........|..+.|++ |+..||..-.|. |++|-.
T Consensus 288 rNGLrhg------eF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 288 RNGLRHG------EFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred cCCcEee------eEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEe
Confidence 5553211 22112224456799999997 999998877665 999954
No 300
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.59 E-value=8.5e-05 Score=53.76 Aligned_cols=203 Identities=11% Similarity=0.060 Sum_probs=106.4
Q ss_pred eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
+.+. +-...+..|+|+|+...++++....+.|...+. +|+.++.+.+. ......++++..
T Consensus 15 ~~l~-g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~------------g~~D~EgI~y~g------ 74 (248)
T PF06977_consen 15 KPLP-GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLD------------GFGDYEGITYLG------ 74 (248)
T ss_dssp EE-T-T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-S------------S-SSEEEEEE-S------
T ss_pred eECC-CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCC------------CCCCceeEEEEC------
Confidence 4555 666679999999987757788888899988887 58888888765 234567777775
Q ss_pred CCCEEEEEeCCCeEEEEeCCCce----e--Ee--e--ccCCCCCCccceeecccceeEEEeeeeee------cc---Cee
Q 025649 94 TNKICVVAKGDGVVDVINIESEL----N--IS--R--SKSTTKPLKGSQSTSKVNIRDAEMEILDQ------SG---GKR 154 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~----~--~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~ 154 (250)
++.++++.-.++.+.++++.... . .. . ...........++|+|.++.++.+.-.+. .. ...
T Consensus 75 ~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 75 NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc
Confidence 67777766678999999884311 1 11 1 11223456889999998766663321111 00 000
Q ss_pred ee-----eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec-c-----CCcee
Q 025649 155 LH-----LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-L-----NKKVN 223 (250)
Q Consensus 155 ~~-----~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~-----~~~v~ 223 (250)
.. ...........+.+++++| ..+++++.....+.|..+|. .+.... .+....+ | -...-
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~p--~t~~lliLS~es~~l~~~d~-~G~~~~------~~~L~~g~~gl~~~~~QpE 225 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYDP--RTGHLLILSDESRLLLELDR-QGRVVS------SLSLDRGFHGLSKDIPQPE 225 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEET--TTTEEEEEETTTTEEEEE-T-T--EEE------EEE-STTGGG-SS---SEE
T ss_pred eeeccccccccccceeccccceEEcC--CCCeEEEEECCCCeEEEECC-CCCEEE------EEEeCCcccCcccccCCcc
Confidence 00 0000112334578999996 56788888888999999994 442211 1111111 1 12366
Q ss_pred EEEecCCCCCeEEEeeCCceEEEE
Q 025649 224 WLCTTPTESENLVVCDTSKVVKVY 247 (250)
Q Consensus 224 ~~~~~~~~~~~l~s~~~d~~i~vw 247 (250)
.|++.+ +|. |+..+.-+..+++
T Consensus 226 GIa~d~-~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 226 GIAFDP-DGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEE-T-T---EEEEETTTEEEEE
T ss_pred EEEECC-CCC-EEEEcCCceEEEe
Confidence 788887 786 4444445544443
No 301
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.59 E-value=4e-05 Score=59.22 Aligned_cols=212 Identities=11% Similarity=0.031 Sum_probs=127.1
Q ss_pred cEEEEcccceeeeeeccCCCCC--ee-eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSI--CS-SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~--v~-~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+.+||..++.++..+. +-..+ .. -+.|+-+.. +++=- ....+.++++...-....+..- .+.
T Consensus 110 ~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~-y~ARv-v~~sl~i~e~t~n~~~~p~~~l------------r~~ 174 (561)
T COG5354 110 VFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDK-YVARV-VGSSLYIHEITDNIEEHPFKNL------------RPV 174 (561)
T ss_pred eeEEeccCceeEeecc-ccCCcccccceeeeeecch-hhhhh-ccCeEEEEecCCccccCchhhc------------ccc
Confidence 5799999999999998 66555 44 678888887 55443 3347999997322221112111 246
Q ss_pred ceeEEecCCCcccCCCCCEEEEE-----eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC-
Q 025649 79 FVHAIAIPDADMLDKTNKICVVA-----KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG- 152 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~-----~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (250)
.+....|+|.. ++..|+.- ...+.+++|.+..+..+...... ...-..+.|.+.|.+++.....+....
T Consensus 175 gi~dFsisP~~----n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf-k~~~~qLkW~~~g~~ll~l~~t~~ksnK 249 (561)
T COG5354 175 GILDFSISPEG----NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF-KVSGVQLKWQVLGKYLLVLVMTHTKSNK 249 (561)
T ss_pred ceeeEEecCCC----CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-eecccEEEEecCCceEEEEEEEeeeccc
Confidence 78888899821 33344432 56789999999865544332221 123456788899988874222222110
Q ss_pred -----eeeee-------eccccCccccEEEEEeecCCCCCcEEEE--eeCCCeEEEEecCCCcceecccccceeeeeecc
Q 025649 153 -----KRLHL-------DYSVGGHTAAASCVAFSMFGERGKYLIS--GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 218 (250)
Q Consensus 153 -----~~~~~-------~~~~~~h~~~v~~~~~~p~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 218 (250)
..+.. +.....-.++|...+|. |.++.+++ |-.+-.+.++|++.. + .+...
T Consensus 250 syfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~---p~S~~F~vi~g~~pa~~s~~~lr~N----------l--~~~~P 314 (561)
T COG5354 250 SYFGESNLYLLRITERSIPVEKDLKDPVHDFTWE---PLSSRFAVISGYMPASVSVFDLRGN----------L--RFYFP 314 (561)
T ss_pred ceeccceEEEEeecccccceeccccccceeeeec---ccCCceeEEecccccceeecccccc----------e--EEecC
Confidence 01111 11111346889999999 66665544 457889999999983 2 33344
Q ss_pred CCceeEEEecCCCCCeEEEeeCC---ceEEEEeC
Q 025649 219 NKKVNWLCTTPTESENLVVCDTS---KVVKVYSI 249 (250)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~s~~~d---~~i~vw~~ 249 (250)
...-+.+.|+| .+++++.++.| |.|-+||.
T Consensus 315 e~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 315 EQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred CcccccccccC-cccEEEEecCCccccceEEecc
Confidence 44555666776 66676665543 55666653
No 302
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.58 E-value=3.5e-05 Score=65.47 Aligned_cols=168 Identities=14% Similarity=0.084 Sum_probs=96.0
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec-------------C--CC--CCCCCCC-----cc---
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF-------------G--LP--ENNGNAG-----QC--- 74 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-------------~--~~--~~~~~~~-----~~--- 74 (250)
-.+.|.+++|+||.+ .++-.+..+++.+-+- +..++..-.. + .. +..+..+ ..
T Consensus 108 vd~GI~aaswS~Dee-~l~liT~~~tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ 185 (1265)
T KOG1920|consen 108 VDNGISAASWSPDEE-LLALITGRQTLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEK 185 (1265)
T ss_pred ccCceEEEeecCCCc-EEEEEeCCcEEEEEec-cccchhccccccccccccccceecccccceeeecchhhhcccccccc
Confidence 356899999999999 7888888777766543 1111111111 0 00 0000000 00
Q ss_pred -------cCCCceeEEecCCCcccCCCCCEEEEE-----eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE
Q 025649 75 -------YNPAFVHAIAIPDADMLDKTNKICVVA-----KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 75 -------~~~~~v~~~~~~~~~~~~~~~~~l~~~-----~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (250)
-..+.-.++.|.- ||.++++. .....|++||-+ |..... ..+....-.+++|-|.|..++
T Consensus 186 ek~~~~~~~~~~~~~IsWRg------Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~-se~~~~l~~~LsWkPsgs~iA 257 (1265)
T KOG1920|consen 186 EKALEQIEQDDHKTSISWRG------DGEYFAVSFVESETGTRKIRVYDRE-GALNST-SEPVEGLQHSLSWKPSGSLIA 257 (1265)
T ss_pred cccccchhhccCCceEEEcc------CCcEEEEEEEeccCCceeEEEeccc-chhhcc-cCcccccccceeecCCCCeEe
Confidence 0011223467775 89999884 233799999988 332222 222235567899999999998
Q ss_pred Eeeeeeecc---------CeeeeeeccccCccccEEEEEeecCCCCCcEEEE---eeCCCeEEEEecCCC
Q 025649 143 EMEILDQSG---------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS---GGNDKLVKVWDCSRF 200 (250)
Q Consensus 143 ~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s---~~~d~~i~iwd~~~~ 200 (250)
++.....-. ....+..-.+......+..++|+ .++..|+. ......|++|-+.+.
T Consensus 258 ~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn---s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 258 AIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN---SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeeecCCCCcEEEEecCCccccccccCCcccccchheeeec---CCCCceeeeecccccceEEEEEecCe
Confidence 644321111 11111112233333458999999 89998887 444556999988775
No 303
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.57 E-value=1.9e-05 Score=60.88 Aligned_cols=115 Identities=12% Similarity=-0.006 Sum_probs=82.1
Q ss_pred EEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEe
Q 025649 5 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA 84 (250)
Q Consensus 5 wd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 84 (250)
|+..+...-..+. .-.-++..+++||.|. +|++.... .|.+|+-.....+..+. ...|..+.
T Consensus 17 ~~~~s~~~~~~~~-~~~~p~~~~~~SP~G~-~l~~~~~~-~V~~~~g~~~~~l~~~~---------------~~~V~~~~ 78 (561)
T COG5354 17 WNSQSEVIHTRFE-SENWPVAYVSESPLGT-YLFSEHAA-GVECWGGPSKAKLVRFR---------------HPDVKYLD 78 (561)
T ss_pred ecCcccccccccc-ccCcchhheeecCcch-heehhhcc-ceEEccccchhheeeee---------------cCCceecc
Confidence 4444433333444 4556889999999998 78776654 58899988776666665 24689999
Q ss_pred cCCCcccCCCCCEEEEEeCCC---------------eEEEEeCCCceeEeeccCCCCC--CccceeecccceeEEE
Q 025649 85 IPDADMLDKTNKICVVAKGDG---------------VVDVINIESELNISRSKSTTKP--LKGSQSTSKVNIRDAE 143 (250)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~d~---------------~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 143 (250)
|+| ++++|.+-+... .+.+||..++..+..+...... .-.-+.|+-+.++.+.
T Consensus 79 fSP------~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 79 FSP------NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred cCc------ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhh
Confidence 999 999998876543 4899999999988777665443 2336778888777663
No 304
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.56 E-value=0.00017 Score=63.32 Aligned_cols=214 Identities=13% Similarity=0.019 Sum_probs=113.7
Q ss_pred eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec-CCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe-
Q 025649 25 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF-GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK- 102 (250)
Q Consensus 25 ~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~- 102 (250)
..+++++.+..++++-+.++.|+++|.. +..+..+.. +.............-...+.+++.+ +++.|+++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~------~gn~LYVaDt 643 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA------KKNLLYVADT 643 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC------CCCEEEEEeC
Confidence 4688887543378888889999999985 443333321 1000000000001122347788887 777665554
Q ss_pred CCCeEEEEeCCCceeEeeccCC---------------CCCCccceeeccc-ceeEEEe------eeeeeccCeeeee---
Q 025649 103 GDGVVDVINIESELNISRSKST---------------TKPLKGSQSTSKV-NIRDAEM------EILDQSGGKRLHL--- 157 (250)
Q Consensus 103 ~d~~i~~~d~~~~~~~~~~~~~---------------~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~--- 157 (250)
.++.|+++|+.++......... .-.....++++|+ +..+++. ..++.........
T Consensus 644 ~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~ 723 (1057)
T PLN02919 644 ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGD 723 (1057)
T ss_pred CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecC
Confidence 5678999999876543211100 0112356889984 4444431 1122111110000
Q ss_pred --eccccC------ccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceeccccc----ceeeeee--------
Q 025649 158 --DYSVGG------HTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINN----DLLIKNI-------- 216 (250)
Q Consensus 158 --~~~~~~------h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~-------- 216 (250)
.....+ .-.....++++ |+++ ++++-+.++.|++||+.++......... ..+..+.
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavs---pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLS---PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred CccccCCCCccccccccCccEEEEe---CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 000111 11245679999 7877 5556667899999999875321100000 0000000
Q ss_pred ccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 217 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 217 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
..-.....+++.+ +|.++++-..++.|++||.
T Consensus 801 ~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~ 832 (1057)
T PLN02919 801 VLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDP 832 (1057)
T ss_pred hhccCCceeeEeC-CCcEEEEECCCCEEEEEEC
Confidence 0112356788887 7888888888999999986
No 305
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.55 E-value=6.6e-05 Score=58.60 Aligned_cols=203 Identities=13% Similarity=0.003 Sum_probs=102.4
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|..+|.++|+.+.+.. .. +.+.+.-.. .+. .++.++.+|.|..||.++|+.+..+.... ...
T Consensus 117 l~ald~~tG~~~W~~~-~~-~~~~~~p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~--------------~~~ 178 (377)
T TIGR03300 117 VIALDAEDGKELWRAK-LS-SEVLSPPLV-ANG-LVVVRTNDGRLTALDAATGERLWTYSRVT--------------PAL 178 (377)
T ss_pred EEEEECCCCcEeeeec-cC-ceeecCCEE-ECC-EEEEECCCCeEEEEEcCCCceeeEEccCC--------------Cce
Confidence 4556777777776655 22 222211111 233 56667788999999999998877765331 111
Q ss_pred EEe--cCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCC---Cc-------cceeecccceeEEE-----e
Q 025649 82 AIA--IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP---LK-------GSQSTSKVNIRDAE-----M 144 (250)
Q Consensus 82 ~~~--~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~-----~ 144 (250)
.+. .+|.. .+..++.+..++.+..+|+++++........... .+ ....+. ++..++. .
T Consensus 179 ~~~~~~sp~~----~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~~vy~~~~~g~l 253 (377)
T TIGR03300 179 TLRGSASPVI----ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GGQVYAVSYQGRV 253 (377)
T ss_pred eecCCCCCEE----ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE-CCEEEEEEcCCEE
Confidence 010 11211 2346778888899999999998866543221100 00 011111 2222221 0
Q ss_pred eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC-cee
Q 025649 145 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVN 223 (250)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 223 (250)
..++.. ..+.+..... ....... ..+..++.++.||.+..+|..+++.. -....... ...
T Consensus 254 ~a~d~~---tG~~~W~~~~--~~~~~p~-----~~~~~vyv~~~~G~l~~~d~~tG~~~---------W~~~~~~~~~~s 314 (377)
T TIGR03300 254 AALDLR---SGRVLWKRDA--SSYQGPA-----VDDNRLYVTDADGVVVALDRRSGSEL---------WKNDELKYRQLT 314 (377)
T ss_pred EEEECC---CCcEEEeecc--CCccCce-----EeCCEEEEECCCCeEEEEECCCCcEE---------EccccccCCccc
Confidence 111211 1111112111 1111122 23467777788999999999988422 11111111 111
Q ss_pred EEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 224 WLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 224 ~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.... .+..+++++.+|.|.++|.
T Consensus 315 sp~i---~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 315 APAV---VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred cCEE---ECCEEEEEeCCCEEEEEEC
Confidence 1122 2447888889999998875
No 306
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=3.4e-05 Score=62.78 Aligned_cols=217 Identities=12% Similarity=0.093 Sum_probs=133.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCC-----------CeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWK-----------PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN 70 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~-----------~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 70 (250)
|.+.|..+-+.++.+. -|...|+.+.|.|-. .-+|+++.-.|.|.+||...+..+..++.
T Consensus 37 V~VVDs~s~q~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~-------- 107 (1062)
T KOG1912|consen 37 VSVVDSRSLQLIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSH-------- 107 (1062)
T ss_pred EEEEehhhhhhhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcC--------
Confidence 5677888888999999 999999999998742 12677888899999999998877777762
Q ss_pred CCcccCCCceeEEecCCCcccCCCC-CEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc-cceeEEEeeee-
Q 025649 71 AGQCYNPAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEIL- 147 (250)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 147 (250)
+.+.+..+.|-|.. ++. ..|++-.....+.+|+..+|+........+ ....|+.+.| |.+.+...+..
T Consensus 108 -----~~~~~qdl~W~~~r---d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~l~s~g 178 (1062)
T KOG1912|consen 108 -----SNDSVQDLCWVPAR---DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCVLGSKG 178 (1062)
T ss_pred -----CCcchhheeeeecc---CcchheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcceEEEEccCc
Confidence 35677778776521 133 567777888999999999998776655442 5556677766 33333211110
Q ss_pred ------eeccCe---eeeeeccccCccc----------------c---------EEEEEeecCCCCCcEEEEeeCCCeEE
Q 025649 148 ------DQSGGK---RLHLDYSVGGHTA----------------A---------ASCVAFSMFGERGKYLISGGNDKLVK 193 (250)
Q Consensus 148 ------~~~~~~---~~~~~~~~~~h~~----------------~---------v~~~~~~p~~~~~~~l~s~~~d~~i~ 193 (250)
+.-..+ ..+..+.-..|.. . ....+|+ |.-+.++-...-+.+.
T Consensus 179 ~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~---p~~rn~lfi~~prell 255 (1062)
T KOG1912|consen 179 FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS---PHWRNILFITFPRELL 255 (1062)
T ss_pred eEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC---hhhhceEEEEeccceE
Confidence 000000 1111111111110 0 1134556 4444444444567899
Q ss_pred EEecCCCcceecccccceeeeeeccCCceeEEEecCC-CCCeEEEeeCCceEEEEe
Q 025649 194 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT-ESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 194 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~vw~ 248 (250)
++|++-..+ +....-..+.+.-+.+.|. ..+.|++.-.||.+.+|-
T Consensus 256 v~dle~~~~---------l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 256 VFDLEYECC---------LAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred EEcchhhce---------eEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 999988633 3333333344445666661 233578888899999984
No 307
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.53 E-value=2.1e-06 Score=67.25 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=63.2
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
.....|.+++++|+.+ .|+.|..||+|.+||...+..... + ..-....++|+| +|..+
T Consensus 257 pL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~~~-k--------------a~~~P~~iaWHp------~gai~ 314 (545)
T PF11768_consen 257 PLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGVTLLA-K--------------AEFIPTLIAWHP------DGAIF 314 (545)
T ss_pred ecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCeeeee-e--------------ecccceEEEEcC------CCcEE
Confidence 4778999999999999 899999999999999876533222 2 123457899999 99999
Q ss_pred EEEeCCCeEEEEeCCCceeE
Q 025649 99 VVAKGDGVVDVINIESELNI 118 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~~ 118 (250)
++|+..|.+.+||+.-....
T Consensus 315 ~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 315 VVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred EEEcCCceEEEEEeecCccc
Confidence 99999999999999764433
No 308
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=9.5e-06 Score=65.78 Aligned_cols=162 Identities=11% Similarity=0.093 Sum_probs=112.3
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc----cC-C-C
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM----LD-K-T 94 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~-~-~ 94 (250)
...-.++.|+|.| +|+-|+. ..|.+-|..+.+.+..+..+ +..|+.+.|.|... +. + .
T Consensus 15 ~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqsie~h-------------~s~V~~VrWap~~~p~~llS~~~~ 78 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQSIELH-------------QSAVTSVRWAPAPSPRDLLSPSSS 78 (1062)
T ss_pred cccccccccCccc--eEEEecC-ceEEEEehhhhhhhhccccC-------------ccceeEEEeccCCCchhccCcccc
Confidence 3446789999998 6887775 47888899998988888744 68899999988532 12 1 2
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEee
Q 025649 95 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS 174 (250)
Q Consensus 95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 174 (250)
.-+|+++...|.|.+||...+..+ ..+..|..++..+.|-
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~----------------------------------------~~l~~~~~~~qdl~W~ 118 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVI----------------------------------------NWLSHSNDSVQDLCWV 118 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhh----------------------------------------hhhcCCCcchhheeee
Confidence 346788888999999999864322 2445566777888888
Q ss_pred cCCCCC-cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649 175 MFGERG-KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 247 (250)
Q Consensus 175 p~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw 247 (250)
|+.++. .+|+.-....++.+|+..+|+ .+-....-.....++.+.|-|.+.+..-+..|.+.+-
T Consensus 119 ~~rd~Srd~LlaIh~ss~lvLwntdtG~---------k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~ 183 (1062)
T KOG1912|consen 119 PARDDSRDVLLAIHGSSTLVLWNTDTGE---------KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC 183 (1062)
T ss_pred eccCcchheeEEecCCcEEEEEEccCCc---------eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence 765666 456665667899999999983 3222222223344477778777777776667766554
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.52 E-value=0.00015 Score=53.08 Aligned_cols=193 Identities=11% Similarity=0.014 Sum_probs=113.0
Q ss_pred eeEEEcC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC
Q 025649 25 SSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 103 (250)
Q Consensus 25 ~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 103 (250)
.+..|.+ ++. ++++--..+.|..|+..+++.. .+..+ . ..++++.. ++ ..++.+..
T Consensus 3 Egp~~d~~~g~-l~~~D~~~~~i~~~~~~~~~~~-~~~~~--------------~-~~G~~~~~-----~~-g~l~v~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGR-LYWVDIPGGRIYRVDPDTGEVE-VIDLP--------------G-PNGMAFDR-----PD-GRLYVADS 59 (246)
T ss_dssp EEEEEETTTTE-EEEEETTTTEEEEEETTTTEEE-EEESS--------------S-EEEEEEEC-----TT-SEEEEEET
T ss_pred cceEEECCCCE-EEEEEcCCCEEEEEECCCCeEE-EEecC--------------C-CceEEEEc-----cC-CEEEEEEc
Confidence 3678888 555 7788778899999999876542 23322 2 56677763 15 45555555
Q ss_pred CCeEEEEeCCCceeEeeccC---C-CCCCccceeecccceeEEEeeeeeeccCe----------eeeeeccccCccccEE
Q 025649 104 DGVVDVINIESELNISRSKS---T-TKPLKGSQSTSKVNIRDAEMEILDQSGGK----------RLHLDYSVGGHTAAAS 169 (250)
Q Consensus 104 d~~i~~~d~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~h~~~v~ 169 (250)
.+ +.++|..+++....... . .......+++.|+|++.++.......... ..+ ...+...-...+
T Consensus 60 ~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~~~~pN 137 (246)
T PF08450_consen 60 GG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVADGLGFPN 137 (246)
T ss_dssp TC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEEEEESSEE
T ss_pred Cc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCe-EEEEecCccccc
Confidence 44 56669988765543332 1 34667889999999977753222111100 011 111112234568
Q ss_pred EEEeecCCCCCcEEE-EeeCCCeEEEEecCCCcc-eecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649 170 CVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQG-VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 247 (250)
Q Consensus 170 ~~~~~p~~~~~~~l~-s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw 247 (250)
.++|+ |+++.|+ +-+..+.|..+++..... ... .+.+.......+..-.+++.+ +|.+.++.-..+.|.++
T Consensus 138 Gi~~s---~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 138 GIAFS---PDGKTLYVADSFNGRIWRFDLDADGGELSN---RRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVF 210 (246)
T ss_dssp EEEEE---TTSSEEEEEETTTTEEEEEEEETTTCCEEE---EEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEE
T ss_pred ceEEC---CcchheeecccccceeEEEeccccccceee---eeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEE
Confidence 89999 8887665 667788999999865322 110 011111222223477888886 88877776678888888
Q ss_pred eC
Q 025649 248 SI 249 (250)
Q Consensus 248 ~~ 249 (250)
+.
T Consensus 211 ~p 212 (246)
T PF08450_consen 211 DP 212 (246)
T ss_dssp ET
T ss_pred CC
Confidence 74
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.7e-06 Score=64.48 Aligned_cols=179 Identities=15% Similarity=0.131 Sum_probs=118.1
Q ss_pred eeeeeccCCCCCeeeEEEcCCCCeEEEEecC-CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649 12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM 90 (250)
Q Consensus 12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (250)
.+..+. .|-..|.+++.+-++- ++.|.+. |..++++|+.+-..+..++... -|..+..+ .+|.
T Consensus 45 fVKhFr-aHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-----------lPg~a~wv-~skG-- 108 (558)
T KOG0882|consen 45 FVKHFR-AHLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVENFDMINMIKLVD-----------LPGFAEWV-TSKG-- 108 (558)
T ss_pred ehhhhH-HHHHHHHhhhccccce-eEeeccCcccceeEEEeeccchhhhccccc-----------CCCceEEe-cCCC--
Confidence 445566 7888999999999997 8999777 9999999998877665555331 22333222 2220
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEE
Q 025649 91 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC 170 (250)
Q Consensus 91 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 170 (250)
+.-..+.++...++.+.++|-....+. ....-.-|..+|.+
T Consensus 109 -d~~s~IAVs~~~sg~i~VvD~~~d~~q--------------------------------------~~~fkklH~sPV~~ 149 (558)
T KOG0882|consen 109 -DKISLIAVSLFKSGKIFVVDGFGDFCQ--------------------------------------DGYFKKLHFSPVKK 149 (558)
T ss_pred -CeeeeEEeecccCCCcEEECCcCCcCc--------------------------------------cceecccccCceEE
Confidence 001133344457789999988753311 11223458899999
Q ss_pred EEeecCCCCCcEEEEeeCCCeEEEEecCC-Ccceec-----ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649 171 VAFSMFGERGKYLISGGNDKLVKVWDCSR-FQGVQT-----SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV 244 (250)
Q Consensus 171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 244 (250)
+.++ +-+.-+++....|.|.-|.... .+.+.. .....-+..+..-.....++.++| ++..+.+-+.|..|
T Consensus 150 i~y~---qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkV 225 (558)
T KOG0882|consen 150 IRYN---QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKV 225 (558)
T ss_pred EEee---ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEE
Confidence 9999 7888999998899999998874 111110 000111122223345577889998 88889998899999
Q ss_pred EEEeC
Q 025649 245 KVYSI 249 (250)
Q Consensus 245 ~vw~~ 249 (250)
+++++
T Consensus 226 R~F~~ 230 (558)
T KOG0882|consen 226 RGFVF 230 (558)
T ss_pred EEEEe
Confidence 99875
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=2e-06 Score=70.71 Aligned_cols=173 Identities=10% Similarity=0.112 Sum_probs=102.3
Q ss_pred eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce----------
Q 025649 11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV---------- 80 (250)
Q Consensus 11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------- 80 (250)
+..+.|+ .|+...+|++|+-+.. .|+.|+..|.|+++++.+|......+.+...........-..-..
T Consensus 1092 r~w~~fr-d~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFR-DETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred ccchhhh-ccccceeeEEeecCCc-eEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 3455677 8889999999999888 899999999999999999887666653311100000000000011
Q ss_pred ------------------eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC---CCCCccceeecccce
Q 025649 81 ------------------HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNI 139 (250)
Q Consensus 81 ------------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 139 (250)
.++.|+. ....-+.|..-....+||++++..+...... ....-.+..|+|+..
T Consensus 1170 aLW~~~s~~~~~Hsf~ed~~vkFsn------~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDEDKAVKFSN------SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred HHhccccccCccccccccceeehhh------hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence 1122221 1112233333456788888887655442221 113346788999998
Q ss_pred eEEEee-eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649 140 RDAEME-ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV 203 (250)
Q Consensus 140 ~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 203 (250)
+++-.| .||.+.. +.++.|......+ .-.|+ |+|..++.-++ |||+++..-+
T Consensus 1244 LIlndGvLWDvR~~---~aIh~FD~ft~~~-~G~FH---P~g~eVIINSE-----IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1244 LILNDGVLWDVRIP---EAIHRFDQFTDYG-GGGFH---PSGNEVIINSE-----IWDMRTFKLL 1296 (1516)
T ss_pred eEeeCceeeeeccH---HHHhhhhhheecc-ccccc---CCCceEEeech-----hhhhHHHHHH
Confidence 888544 3555544 3344444333222 23578 88888887765 8999986443
No 312
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.40 E-value=2.6e-06 Score=61.73 Aligned_cols=186 Identities=11% Similarity=0.100 Sum_probs=103.0
Q ss_pred CCeeeEEEcCC-CCeEEEEecCCCeEEEEEccCCC--Cccc------eec--C----------CCCCCCC-C--------
Q 025649 22 SICSSVQFIPW-KPWEVISGGLDSKLVMWDFSKGR--PNKI------VNF--G----------LPENNGN-A-------- 71 (250)
Q Consensus 22 ~~v~~l~~~~~-~~~~l~s~s~dg~v~iwd~~~~~--~~~~------~~~--~----------~~~~~~~-~-------- 71 (250)
..|..+.|..+ +...++..+.|.+|++|.+.... .+.. +.. + .|....+ .
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 36778888654 44467778899999999986431 1110 000 0 0000000 0
Q ss_pred -CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec
Q 025649 72 -GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 150 (250)
Q Consensus 72 -~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (250)
..-.|+-.+.++.++. +...++++ .|=.|.+|++.-.. +++.+.
T Consensus 166 vyaNaH~yhiNSiS~Ns------D~et~lSa-DdLrINLWnl~i~D----------------------------~sFnIV 210 (460)
T COG5170 166 VYANAHPYHINSISFNS------DKETLLSA-DDLRINLWNLEIID----------------------------GSFNIV 210 (460)
T ss_pred eccccceeEeeeeeecC------chheeeec-cceeeeeccccccC----------------------------CceEEE
Confidence 1122445566777775 55555554 56778888886311 111111
Q ss_pred cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce-ec-----c-cccceeeeeeccCCcee
Q 025649 151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV-QT-----S-INNDLLIKNINLNKKVN 223 (250)
Q Consensus 151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~-----~-~~~~~~~~~~~~~~~v~ 223 (250)
+.++ ..+..-..-|++..|+| ...+.+.-.+..|.|++-|++....- .. . -.+--...+.+-...|.
T Consensus 211 DiKP----~nmeeLteVItSaeFhp--~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSIS 284 (460)
T COG5170 211 DIKP----HNMEELTEVITSAEFHP--EMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSIS 284 (460)
T ss_pred eccC----ccHHHHHHHHhhcccCH--hHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhc
Confidence 1110 11222234678889996 45567777788999999999853211 00 0 00000111223345677
Q ss_pred EEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 224 WLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 224 ~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.+.|++ +|+++++-+. -++++||++
T Consensus 285 D~kFs~-ngryIlsRdy-ltvkiwDvn 309 (460)
T COG5170 285 DFKFSD-NGRYILSRDY-LTVKIWDVN 309 (460)
T ss_pred ceEEcC-CCcEEEEecc-ceEEEEecc
Confidence 888987 8888888764 479999974
No 313
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.39 E-value=1.4e-06 Score=43.09 Aligned_cols=39 Identities=33% Similarity=0.523 Sum_probs=34.8
Q ss_pred ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEE
Q 025649 10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWD 50 (250)
Q Consensus 10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd 50 (250)
++.+..+. .|...|.++.|++.+. ++++++.|+.+++|+
T Consensus 2 ~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLK-GHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEE-ecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 45667788 8999999999999987 899999999999996
No 314
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=3.3e-06 Score=66.62 Aligned_cols=95 Identities=8% Similarity=0.042 Sum_probs=77.7
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee-EEecCCCcccCCCCCEEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH-AIAIPDADMLDKTNKICV 99 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~l~ 99 (250)
...|..+.|+|.-+ ++|.+..+|.|.+..+. .+.+.++..+ ...+. +++|.| ||+.|+
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwtip~p-------------~~~v~~sL~W~~------DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWTIPIP-------------GENVTASLCWRP------DGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEeccCC-------------CCccceeeeecC------CCCEEE
Confidence 34688999999999 99999999999999997 7777787744 23444 999999 999999
Q ss_pred EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc
Q 025649 100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 136 (250)
Q Consensus 100 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (250)
+|-.||+|++.|.+++..+..........+.++.|++
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999999998877765444446666666653
No 315
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.34 E-value=0.00016 Score=52.11 Aligned_cols=170 Identities=12% Similarity=0.161 Sum_probs=94.3
Q ss_pred CcEEEEcccceeeeeeccCC------CCCeeeEEEcCCC-----CeEEEEecCCCeEEEEEccCC-----CCccceecCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGH------SSICSSVQFIPWK-----PWEVISGGLDSKLVMWDFSKG-----RPNKIVNFGL 64 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h------~~~v~~l~~~~~~-----~~~l~s~s~dg~v~iwd~~~~-----~~~~~~~~~~ 64 (250)
+|+++|+.. ..+..+..++ ..+|..|.|.+.. ...|+.-..+|.++-|-+..+ +..+.+.+.
T Consensus 66 ~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~- 143 (282)
T PF15492_consen 66 TIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS- 143 (282)
T ss_pred eEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec-
Confidence 588999864 4444444122 3567778776543 225777778888888876432 333444432
Q ss_pred CCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC-----------eEEEEeCCCceeEeeccCCCCCCcccee
Q 025649 65 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-----------VVDVINIESELNISRSKSTTKPLKGSQS 133 (250)
Q Consensus 65 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 133 (250)
...+..|.++.++| ..++|++|+... -+..|.+-++..-..........+.
T Consensus 144 ---------~~yp~Gi~~~vy~p------~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~--- 205 (282)
T PF15492_consen 144 ---------SHYPHGINSAVYHP------KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT--- 205 (282)
T ss_pred ---------ccCCCceeEEEEcC------CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc---
Confidence 12467899999998 667777765321 2344444433322111100000000
Q ss_pred ecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649 134 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 201 (250)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~ 201 (250)
-.+.. -+.+. ....+...........|..+..| |+|..|++...+|.|.+|++.+..
T Consensus 206 ~~~~~-----~~~~~---~~~~~~fs~~~~~~d~i~kmSlS---Pdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 206 ASSKR-----RGLLR---IPSFKFFSRQGQEQDGIFKMSLS---PDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred ccccc-----cceee---ccceeeeeccccCCCceEEEEEC---CCCCEEEEEEcCCeEEEEecCcch
Confidence 00000 00000 00111111112245679999999 899999999999999999999873
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.31 E-value=5.2e-06 Score=68.31 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=97.0
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC---------CCeEEEEEccCCCCccceecCCCCCCCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---------DSKLVMWDFSKGRPNKIVNFGLPENNGNA 71 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 71 (250)
||.+-|+.+.+.+.++. +|++.|.++... |. +|++|+. |.-|++||++..+.+..+.+.
T Consensus 198 ~V~LrD~~s~~~iht~~-aHs~siSDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-------- 265 (1118)
T KOG1275|consen 198 TVFLRDPNSFETIHTFD-AHSGSISDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-------- 265 (1118)
T ss_pred eEEeecCCcCceeeeee-ccccceeeeecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccc--------
Confidence 47788999999999999 999999887765 44 8888876 556899999988877766644
Q ss_pred CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc
Q 025649 72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 151 (250)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (250)
..-.-+.|.| .-...+++++..|...+-|..+-... +.+
T Consensus 266 ------~~P~flrf~P-----sl~t~~~V~S~sGq~q~vd~~~lsNP-----------------~~~------------- 304 (1118)
T KOG1275|consen 266 ------YGPQFLRFHP-----SLTTRLAVTSQSGQFQFVDTATLSNP-----------------PAG------------- 304 (1118)
T ss_pred ------cCchhhhhcc-----cccceEEEEecccceeeccccccCCC-----------------ccc-------------
Confidence 1224456666 35678889999999999885431100 000
Q ss_pred CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEec
Q 025649 152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 197 (250)
Q Consensus 152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~ 197 (250)
+..+..-...+.++.++ ++++.++.|..+|.|.+|--
T Consensus 305 ------~~~v~p~~s~i~~fDiS---sn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 305 ------VKMVNPNGSGISAFDIS---SNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ------eeEEccCCCcceeEEec---CCCceEEEecccCcEeeecC
Confidence 01112223347888888 89999999999999999973
No 317
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.31 E-value=6e-07 Score=70.83 Aligned_cols=200 Identities=16% Similarity=0.133 Sum_probs=117.2
Q ss_pred CCeeeEEEcCCCC-eEEEEecCCCeEEEEEccCCCCc-cceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649 22 SICSSVQFIPWKP-WEVISGGLDSKLVMWDFSKGRPN-KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 99 (250)
Q Consensus 22 ~~v~~l~~~~~~~-~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 99 (250)
..+.|+++.-+.. -+++.|..+|.|.+-..+...-. +.+..+ +....++++|++ .|.+.||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~------------~ar~Ct~lAwne-----LDtn~LA 119 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPG------------YARPCTSLAWNE-----LDTNHLA 119 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccc------------cccccccccccc-----ccHHHHH
Confidence 4566777654332 37889999999999887654322 222222 456788999998 4778888
Q ss_pred EEe----CCCeEEEEeCCCcee--E--eeccCCCCCCccceeecccceeEEEeeeeeeccCe---eeeeeccccCccccE
Q 025649 100 VAK----GDGVVDVINIESELN--I--SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK---RLHLDYSVGGHTAAA 168 (250)
Q Consensus 100 ~~~----~d~~i~~~d~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v 168 (250)
+|- .|..+.+||+.++.. . ..+.........+++|..+.+.+. .|........ +..+.....-....+
T Consensus 120 agldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvl-aGm~sr~~~ifdlRqs~~~~~svnTk~v 198 (783)
T KOG1008|consen 120 AGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVL-AGMTSRSVHIFDLRQSLDSVSSVNTKYV 198 (783)
T ss_pred hhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhh-cccccchhhhhhhhhhhhhhhhhhhhhc
Confidence 883 467899999998622 1 111111223444666666666665 3322211100 000001111123356
Q ss_pred EEEEeecCCCCCcEEEEeeCCCeEEEEe-cCCCcceecccccceeeeeec----cCCceeEEEecCCCCCeEEEeeCC-c
Q 025649 169 SCVAFSMFGERGKYLISGGNDKLVKVWD-CSRFQGVQTSINNDLLIKNIN----LNKKVNWLCTTPTESENLVVCDTS-K 242 (250)
Q Consensus 169 ~~~~~~p~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d-~ 242 (250)
..+...||. ++|+++-. ||.|.+|| .++-+. ++..... ....+..++|+|.....+++...| +
T Consensus 199 qG~tVdp~~--~nY~cs~~-dg~iAiwD~~rnien--------pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~ 267 (783)
T KOG1008|consen 199 QGITVDPFS--PNYFCSNS-DGDIAIWDTYRNIEN--------PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSI 267 (783)
T ss_pred ccceecCCC--CCceeccc-cCceeeccchhhhcc--------HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcc
Confidence 677888644 46777665 99999999 554322 1111111 122488999999766677777754 6
Q ss_pred eEEEEeCC
Q 025649 243 VVKVYSIS 250 (250)
Q Consensus 243 ~i~vw~~~ 250 (250)
+|++|++.
T Consensus 268 tIrlydi~ 275 (783)
T KOG1008|consen 268 TIRLYDIC 275 (783)
T ss_pred eEEEeccc
Confidence 88988863
No 318
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.29 E-value=0.00068 Score=51.73 Aligned_cols=217 Identities=14% Similarity=0.092 Sum_probs=111.6
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEE---EcCCC---CeEEEEecC----------CCeEEEEEccCC-C---Cccce-
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQ---FIPWK---PWEVISGGL----------DSKLVMWDFSKG-R---PNKIV- 60 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~---~~~~~---~~~l~s~s~----------dg~v~iwd~~~~-~---~~~~~- 60 (250)
|++.|..+.+.+..+.......+.+++ +..+. ..+|+.|.. .|.|.++++... . .+..+
T Consensus 4 i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~ 83 (321)
T PF03178_consen 4 IRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH 83 (321)
T ss_dssp EEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE
T ss_pred EEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE
Confidence 789999888887766522334455544 33321 347777643 289999999874 1 11111
Q ss_pred ecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce-eEeeccCCCCCCccceeecccce
Q 025649 61 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL-NISRSKSTTKPLKGSQSTSKVNI 139 (250)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 139 (250)
... .+..|++++.- +++ |+++. ++.|.+|++...+ ............+.++... +.
T Consensus 84 ~~~------------~~g~V~ai~~~-------~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~ 140 (321)
T PF03178_consen 84 STE------------VKGPVTAICSF-------NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KN 140 (321)
T ss_dssp EEE------------ESS-EEEEEEE-------TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TT
T ss_pred EEe------------ecCcceEhhhh-------CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--cc
Confidence 111 34678887765 355 44443 4889999998877 4443333322344444444 33
Q ss_pred eEEEeee-------eeec-cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccce
Q 025649 140 RDAEMEI-------LDQS-GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 211 (250)
Q Consensus 140 ~~~~~~~-------~~~~-~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 211 (250)
+++ ++. .... .......+.. ......++++.|- ++++.++.+..+|.+.++...............+
T Consensus 141 ~I~-vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l---~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L 215 (321)
T PF03178_consen 141 YIL-VGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFL---VDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKL 215 (321)
T ss_dssp EEE-EEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE----SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBE
T ss_pred EEE-EEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEe---cCCcEEEEEcCCCeEEEEEECCCCcccccccccc
Confidence 444 221 1000 1122222222 2234568888887 5667999999999999998864221111100012
Q ss_pred ee-eeeccCCceeEE---EecCC--CCC-----eEEEeeCCceEEE
Q 025649 212 LI-KNINLNKKVNWL---CTTPT--ESE-----NLVVCDTSKVVKV 246 (250)
Q Consensus 212 ~~-~~~~~~~~v~~~---~~~~~--~~~-----~l~s~~~d~~i~v 246 (250)
.. ........|+++ ...|. +.. .++-++.+|.|.+
T Consensus 216 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 216 ERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 11 223344567777 44441 222 3777788888863
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=3e-05 Score=63.06 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=97.9
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 100 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 100 (250)
.+.++|++++.. .|+-|+-+|.|++.+... .....+. |... +.+|.++++
T Consensus 39 ~D~is~~av~~~---~~~~GtH~g~v~~~~~~~-~~~~~~~--------------~s~~------------~~~Gey~as 88 (846)
T KOG2066|consen 39 NDAISCCAVHDK---FFALGTHRGAVYLTTCQG-NPKTNFD--------------HSSS------------ILEGEYVAS 88 (846)
T ss_pred hhHHHHHHhhcc---eeeeccccceEEEEecCC-ccccccc--------------cccc------------ccCCceEEE
Confidence 456677777654 799999999999999853 3222221 1111 138999999
Q ss_pred EeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecC--CC
Q 025649 101 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF--GE 178 (250)
Q Consensus 101 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~ 178 (250)
|+.||+|.+-.+-+.+... ++ ....++.+++++|. ..
T Consensus 89 CS~DGkv~I~sl~~~~~~~----------------------------------------~~-df~rpiksial~Pd~~~~ 127 (846)
T KOG2066|consen 89 CSDDGKVVIGSLFTDDEIT----------------------------------------QY-DFKRPIKSIALHPDFSRQ 127 (846)
T ss_pred ecCCCcEEEeeccCCccce----------------------------------------eE-ecCCcceeEEeccchhhh
Confidence 9999999998877644221 11 12356888999842 11
Q ss_pred CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 179 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 179 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
..+.+++|+.-| +.++.-+-.... .. .....-.++|.++.| .|.+||=++.+| |++||+.
T Consensus 128 ~sk~fv~GG~ag-lvL~er~wlgnk------~~-v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~ 187 (846)
T KOG2066|consen 128 QSKQFVSGGMAG-LVLSERNWLGNK------DS-VVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTP 187 (846)
T ss_pred hhhheeecCcce-EEEehhhhhcCc------cc-eeeecCccceEEEEe---cCcEEEEecCCC-cEEEecc
Confidence 256889999888 777765433211 11 134556678999999 466888899887 8999863
No 320
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.18 E-value=0.00016 Score=58.45 Aligned_cols=144 Identities=14% Similarity=0.050 Sum_probs=88.3
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEe--c-------------------------------------C
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG--G-------------------------------------L 42 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~--s-------------------------------------~ 42 (250)
+.+.|.++.+....+. -.+....++++|+|++.++++ + .
T Consensus 217 vSvID~etmeV~~qV~--Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~ 294 (635)
T PRK02888 217 FTAVDAETMEVAWQVM--VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIG 294 (635)
T ss_pred EEEEECccceEEEEEE--eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEEC
Confidence 5667888888777776 223446778888888434443 1 1
Q ss_pred CCeEEEEEccC-----CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCce
Q 025649 43 DSKLVMWDFSK-----GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESEL 116 (250)
Q Consensus 43 dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~ 116 (250)
++.|.+.|..+ .+.+..+. -+...+.++++| ||+++++++ .+.++.++|+.+.+
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP--------------VGKsPHGV~vSP------DGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP--------------VPKNPHGVNTSP------DGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE--------------CCCCccceEECC------CCCEEEEeCCCCCcEEEEEChhhh
Confidence 13355555544 22333333 345678899998 999887765 48999999998744
Q ss_pred eEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEe
Q 025649 117 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 196 (250)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd 196 (250)
.....+ +.|.... ..+.+--.+ ....+|. ++|+...|-..|..|..||
T Consensus 355 ~~~~~~-----------~~~~~~v-----------------vaevevGlG-PLHTaFD---g~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 355 DLFDGK-----------IKPRDAV-----------------VAEPELGLG-PLHTAFD---GRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhhcc-----------CCccceE-----------------EEeeccCCC-cceEEEC---CCCCEEEeEeecceeEEEe
Confidence 321111 0111111 112222223 3456788 7888888888899999999
Q ss_pred cCC
Q 025649 197 CSR 199 (250)
Q Consensus 197 ~~~ 199 (250)
+..
T Consensus 403 ~~~ 405 (635)
T PRK02888 403 IEA 405 (635)
T ss_pred hHH
Confidence 876
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00034 Score=57.75 Aligned_cols=187 Identities=12% Similarity=0.028 Sum_probs=108.9
Q ss_pred EcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC---
Q 025649 29 FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG--- 105 (250)
Q Consensus 29 ~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~--- 105 (250)
|++.+. .++.|+.+|.|.+.+-. -+.+..++.. ..+.+..+-... +..+|++.+.|+
T Consensus 31 ~~s~~~-~vvigt~~G~V~~Ln~s-~~~~~~fqa~------------~~siv~~L~~~~------~~~~L~sv~Ed~~~n 90 (933)
T KOG2114|consen 31 CSSSTG-SVVIGTADGRVVILNSS-FQLIRGFQAY------------EQSIVQFLYILN------KQNFLFSVGEDEQGN 90 (933)
T ss_pred EcCCCc-eEEEeeccccEEEeccc-ceeeehheec------------chhhhhHhhccc------CceEEEEEeecCCCC
Confidence 456666 79999999998877642 2333444422 111233333322 345777776654
Q ss_pred --eEEEEeCCCc---e---eE-----eeccCC-CCCCccceeecccceeEEEeeeeeeccC--------eeeeeeccccC
Q 025649 106 --VVDVINIESE---L---NI-----SRSKST-TKPLKGSQSTSKVNIRDAEMEILDQSGG--------KRLHLDYSVGG 163 (250)
Q Consensus 106 --~i~~~d~~~~---~---~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 163 (250)
.+++||++.- . +. .....+ ...++.+++.+.+-+.++ +|..++.+. .+.....-...
T Consensus 91 p~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv-~Gf~nG~V~~~~GDi~RDrgsr~~~~~~ 169 (933)
T KOG2114|consen 91 PVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIV-CGFTNGLVICYKGDILRDRGSRQDYSHR 169 (933)
T ss_pred ceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEE-EEecCcEEEEEcCcchhccccceeeecc
Confidence 5899999752 1 11 111222 346778888888866666 666555431 11111111123
Q ss_pred ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCce
Q 025649 164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV 243 (250)
Q Consensus 164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 243 (250)
.+.+|+.+++. .++.-++-......|.+|.+.... +.+.....|+.+.++..+++..++ |++++.. .
T Consensus 170 ~~~pITgL~~~---~d~~s~lFv~Tt~~V~~y~l~gr~--------p~~~~ld~~G~~lnCss~~~~t~q-fIca~~e-~ 236 (933)
T KOG2114|consen 170 GKEPITGLALR---SDGKSVLFVATTEQVMLYSLSGRT--------PSLKVLDNNGISLNCSSFSDGTYQ-FICAGSE-F 236 (933)
T ss_pred CCCCceeeEEe---cCCceeEEEEecceeEEEEecCCC--------cceeeeccCCccceeeecCCCCcc-EEEecCc-e
Confidence 45789999998 677663333345689999998542 233446677788888888865554 4444433 4
Q ss_pred EEEEeC
Q 025649 244 VKVYSI 249 (250)
Q Consensus 244 i~vw~~ 249 (250)
+.+|+.
T Consensus 237 l~fY~s 242 (933)
T KOG2114|consen 237 LYFYDS 242 (933)
T ss_pred EEEEcC
Confidence 777764
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.17 E-value=0.0017 Score=51.12 Aligned_cols=213 Identities=8% Similarity=0.004 Sum_probs=107.0
Q ss_pred cEEEEcccceeeeeeccCCCCCee-eEEEcC--CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICS-SVQFIP--WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~-~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|.-+|.++|+.+..+. .....+. ...-+| .+. .++.++.+|.+...|..+|+.+.......+.... ...
T Consensus 172 l~ald~~tG~~~W~~~-~~~~~~~~~~~~sP~v~~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~------~~~ 243 (394)
T PRK11138 172 LQALNESDGAVKWTVN-LDVPSLTLRGESAPATAFG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT------EID 243 (394)
T ss_pred EEEEEccCCCEeeeec-CCCCcccccCCCCCEEECC-EEEEEcCCCEEEEEEccCChhhheeccccCCCcc------chh
Confidence 4567888888887776 2211100 000111 122 4666788899999999999887766533110000 000
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe-----eeeeeccCe
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM-----EILDQSGGK 153 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 153 (250)
....+..+|.. .+..++.++.+|.+..+|..+++......... ...+... ++..++.. -..+...
T Consensus 244 ~~~~~~~sP~v----~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~~~-~~~vy~~~~~g~l~ald~~t-- 313 (394)
T PRK11138 244 RLVDVDTTPVV----VGGVVYALAYNGNLVALDLRSGQIVWKREYGS---VNDFAVD-GGRIYLVDQNDRVYALDTRG-- 313 (394)
T ss_pred cccccCCCcEE----ECCEEEEEEcCCeEEEEECCCCCEEEeecCCC---ccCcEEE-CCEEEEEcCCCeEEEEECCC--
Confidence 01111223321 34567777789999999999998775543221 1111111 11211110 0111111
Q ss_pred eeeeeccccCcc-ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeE-EEecCCC
Q 025649 154 RLHLDYSVGGHT-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTE 231 (250)
Q Consensus 154 ~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~ 231 (250)
.+.+-....-. ....+.... +.+++.++.||.+...|..++ +.+....-....+.+ ..+. +
T Consensus 314 -G~~~W~~~~~~~~~~~sp~v~-----~g~l~v~~~~G~l~~ld~~tG---------~~~~~~~~~~~~~~s~P~~~--~ 376 (394)
T PRK11138 314 -GVELWSQSDLLHRLLTAPVLY-----NGYLVVGDSEGYLHWINREDG---------RFVAQQKVDSSGFLSEPVVA--D 376 (394)
T ss_pred -CcEEEcccccCCCcccCCEEE-----CCEEEEEeCCCEEEEEECCCC---------CEEEEEEcCCCcceeCCEEE--C
Confidence 11111111000 111122222 356778889999999999998 333333222222222 1221 3
Q ss_pred CCeEEEeeCCceEEEEeCC
Q 025649 232 SENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 232 ~~~l~s~~~d~~i~vw~~~ 250 (250)
+ .|+.++.||.+..++++
T Consensus 377 ~-~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 377 D-KLLIQARDGTVYAITRP 394 (394)
T ss_pred C-EEEEEeCCceEEEEeCC
Confidence 3 68889999999988753
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=6.6e-06 Score=61.57 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=65.1
Q ss_pred eccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 158 DYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
..-+.+|...|..++|+| ..+ ++..++.+..|+|.|+++. .....+..+ ..+++++|.-++..+|+
T Consensus 186 sq~lp~~g~~IrdlafSp---~~~GLl~~asl~nkiki~dlet~---------~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSP---FNEGLLGLASLGNKIKIMDLETS---------CVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred hhcccccchhhhhhccCc---cccceeeeeccCceEEEEecccc---------eeeeheecc-CCceeeeeccCCcceeE
Confidence 345667888999999994 444 7888999999999999996 344444555 88999999987777889
Q ss_pred EeeCCceEEEEeCC
Q 025649 237 VCDTSKVVKVYSIS 250 (250)
Q Consensus 237 s~~~d~~i~vw~~~ 250 (250)
.|..+|.|.+||++
T Consensus 253 aGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMR 266 (463)
T ss_pred EeccCceEEEEEcc
Confidence 99999999999985
No 324
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.14 E-value=0.00047 Score=42.70 Aligned_cols=67 Identities=12% Similarity=0.080 Sum_probs=51.3
Q ss_pred eeeEEEc---CCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649 24 CSSVQFI---PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 100 (250)
Q Consensus 24 v~~l~~~---~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 100 (250)
|++|++. .+|...|+.||.|..||+|+- .+.+..+. ..+.+.++.-.. +..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~--------------e~~~v~~L~~~~-------~~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT--------------ETDKVTSLCSLG-------GGRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe--------------cccceEEEEEcC-------CCEEEE
Confidence 5566654 466568999999999999985 35566665 246788887774 578999
Q ss_pred EeCCCeEEEEeCC
Q 025649 101 AKGDGVVDVINIE 113 (250)
Q Consensus 101 ~~~d~~i~~~d~~ 113 (250)
+..+|+|-+|+-.
T Consensus 59 ~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 59 ALANGTVGVYDRS 71 (111)
T ss_pred EecCCEEEEEeCc
Confidence 9999999999874
No 325
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.13 E-value=0.0015 Score=48.35 Aligned_cols=201 Identities=10% Similarity=-0.001 Sum_probs=115.1
Q ss_pred CeeeEEEcCCCCeEEEEecCCCe-EEEEEccCCCCccceecCCCCCCCCCCcccCCCce-eEEecCCCcccCCCCCEEEE
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSK-LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV-HAIAIPDADMLDKTNKICVV 100 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~l~~ 100 (250)
....++.+|.....++.+-.-|+ ..+||.++++....+..+. .... --..|++ +|++|++
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~------------gRHFyGHg~fs~------dG~~Lyt 67 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP------------GRHFYGHGVFSP------DGRLLYT 67 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC------------CCEEecCEEEcC------CCCEEEE
Confidence 34578889966546677766664 7899999999887776330 1111 1356787 9999998
Q ss_pred EeC-----CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE-eeeeeec--------------------cCee
Q 025649 101 AKG-----DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE-MEILDQS--------------------GGKR 154 (250)
Q Consensus 101 ~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------------~~~~ 154 (250)
.-. .|.|-|||...+...........-....+.+.|||+.|+. .|..... +...
T Consensus 68 TEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 68 TENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred eccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 843 5899999999433333222233355677889999966652 2211111 0111
Q ss_pred eeeecc--c--cCccccEEEEEeecCCCCCcEEEEeeCCC-------eEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649 155 LHLDYS--V--GGHTAAASCVAFSMFGERGKYLISGGNDK-------LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 223 (250)
Q Consensus 155 ~~~~~~--~--~~h~~~v~~~~~~p~~~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (250)
.+.+.+ + .-|...|..+++. ++|..++..-..| .|.+++.... .....-++ .......+-+-
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~---~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~--~~~~~l~~Y~g 220 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVD---GDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPE--EQWRRLNGYIG 220 (305)
T ss_pred CceeeeeecCccccccceeeEEec---CCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCCh--HHHHhhCCceE
Confidence 222222 3 2366678888888 6776555543332 2333333221 10000000 01123344577
Q ss_pred EEEecCCCCCeE-EEeeCCceEEEEeC
Q 025649 224 WLCTTPTESENL-VVCDTSKVVKVYSI 249 (250)
Q Consensus 224 ~~~~~~~~~~~l-~s~~~d~~i~vw~~ 249 (250)
++++++ ++..+ +|+=..+.+.+||.
T Consensus 221 SIa~~~-~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 221 SIAADR-DGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred EEEEeC-CCCEEEEECCCCCEEEEEEC
Confidence 889986 67666 45557889999985
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.11 E-value=6.4e-05 Score=60.40 Aligned_cols=124 Identities=14% Similarity=0.155 Sum_probs=88.0
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 99 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 99 (250)
|...|.=-+++..++ +++.|+.-|.|.+|+-..++....-..+ ....+....+++ +..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~------------~~~~~~~~~vs~------~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEG------------ATGITCVRSVSS------VEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcccccC------------ccceEEEEEecc------hhHhhh
Confidence 344455555666677 8999999999999998766554332211 234556667777 888899
Q ss_pred EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649 100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 179 (250)
Q Consensus 100 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 179 (250)
.|+..|.|.++-+..+..... .++. .--+.|+..|+++.|+ ++
T Consensus 93 agt~~g~V~v~ql~~~~p~~~------------------~~~t----------------~~d~~~~~rVTal~Ws---~~ 135 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDL------------------DYVT----------------PCDKSHKCRVTALEWS---KN 135 (726)
T ss_pred hhcCCceEEeehhhccCCCcc------------------eeec----------------cccccCCceEEEEEec---cc
Confidence 999999999998876321110 0000 0112388999999999 89
Q ss_pred CcEEEEeeCCCeEEEEecCC
Q 025649 180 GKYLISGGNDKLVKVWDCSR 199 (250)
Q Consensus 180 ~~~l~s~~~d~~i~iwd~~~ 199 (250)
+..+.+|...|+|..-.+.+
T Consensus 136 ~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 136 GMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccEEeecCCCceEEEEEech
Confidence 99999999999999988877
No 327
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.11 E-value=8.3e-06 Score=40.16 Aligned_cols=36 Identities=44% Similarity=0.771 Sum_probs=31.4
Q ss_pred eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEe
Q 025649 158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 196 (250)
Q Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd 196 (250)
...+..|...|.++.|. +++.++++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~---~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFS---PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEEC---CCCCEEEEecCCCeEEEcC
Confidence 44566788899999999 7779999999999999996
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.10 E-value=0.00062 Score=55.21 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=87.3
Q ss_pred CCCEEEE-EeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEE
Q 025649 94 TNKICVV-AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA 172 (250)
Q Consensus 94 ~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 172 (250)
+|+.+.. .-..+.+.+.|.++.+....+... .....+.++|+|++++. .+.+....... ..+...... ..+.
T Consensus 203 DGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spdGk~afv-TsyNsE~G~tl---~em~a~e~d-~~vv 275 (635)
T PRK02888 203 DGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFS-TCYNSEEGVTL---AEMMAAERD-WVVV 275 (635)
T ss_pred CCCEeecccceeEEEEEEECccceEEEEEEeC--CCcccceECCCCCEEEE-eccCcccCcce---eeeccccCc-eEEE
Confidence 6765533 335678888999887666555554 45677899999999983 33222222211 122111111 3444
Q ss_pred eec-----CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE-eeCCceEEE
Q 025649 173 FSM-----FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV-CDTSKVVKV 246 (250)
Q Consensus 173 ~~p-----~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d~~i~v 246 (250)
|++ ..++|++...+ ++.|.+.|.++..+.. ..+..+..-...+..+.++| ||+++++ +..+..|.|
T Consensus 276 fni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~-----~~v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSV 347 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANAG-----SALTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTV 347 (635)
T ss_pred EchHHHHHhhhCCCEEEEC--CCEEEEEECCccccCC-----cceEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEE
Confidence 442 11467766653 6789999998811000 23345566777888999998 8888766 456899999
Q ss_pred EeCC
Q 025649 247 YSIS 250 (250)
Q Consensus 247 w~~~ 250 (250)
.|++
T Consensus 348 IDv~ 351 (635)
T PRK02888 348 IDVR 351 (635)
T ss_pred EECh
Confidence 9873
No 329
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.07 E-value=0.0015 Score=51.46 Aligned_cols=166 Identities=11% Similarity=-0.004 Sum_probs=93.8
Q ss_pred ceeeeeeccCCCCCeeeEEEcCCCCeEEEEe--cCC-CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecC
Q 025649 10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISG--GLD-SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIP 86 (250)
Q Consensus 10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~--s~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 86 (250)
+...+.+. .-...+..-+|+|+++.+.... ... ..+.++|+.+++........ ..-...+|+
T Consensus 182 g~~~~~l~-~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~--------------g~~~~P~fs 246 (425)
T COG0823 182 GYNQQKLT-DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN--------------GNNGAPAFS 246 (425)
T ss_pred CcceeEec-ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC--------------CccCCccCC
Confidence 44555555 4456677888999997322221 222 46999999988876666533 334556788
Q ss_pred CCcccCCCCCEEEEE-eCCCe--EEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC-----eeeeee
Q 025649 87 DADMLDKTNKICVVA-KGDGV--VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG-----KRLHLD 158 (250)
Q Consensus 87 ~~~~~~~~~~~l~~~-~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 158 (250)
| +|+.|+.+ ..||. |.++|+.++.... +... ...-..-.|+|||+.++......+... ......
T Consensus 247 p------DG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 247 P------DGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred C------CCCEEEEEECCCCCccEEEEcCCCCccee-cccC-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 8 88776555 55665 5566777766333 2222 244447889999999985422222110 000000
Q ss_pred ccccCccccEEEEEeecCCCCCcEEEEeeC-CCe--EEEEecCCCc
Q 025649 159 YSVGGHTAAASCVAFSMFGERGKYLISGGN-DKL--VKVWDCSRFQ 201 (250)
Q Consensus 159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~--i~iwd~~~~~ 201 (250)
..+....+.-..-.++ |+|++++..+. +|. |.+.|+.++.
T Consensus 319 ~riT~~~~~~~~p~~S---pdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 319 TRLTFSGGGNSNPVWS---PDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred eEeeccCCCCcCccCC---CCCCEEEEEeccCCceeeEEeccCCCC
Confidence 1111111111144566 89998887764 344 6667776653
No 330
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.04 E-value=0.00045 Score=57.88 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=92.1
Q ss_pred EEEE-ecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC
Q 025649 36 EVIS-GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 114 (250)
Q Consensus 36 ~l~s-~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 114 (250)
+|+. ......|.-.|++.|+.+..+..+ ...+|..++-.. -+-......-+.|-.++.+..||.+-
T Consensus 495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~------------~~~~v~~~~p~~-K~aqlt~e~tflGls~n~lfriDpR~ 561 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLERGKVVEEWKVH------------DDIPVVDIAPDS-KFAQLTNEQTFLGLSDNSLFRIDPRL 561 (794)
T ss_pred eEeecCCCCCceEEEecCCCcEEEEeecC------------CCcceeEecccc-cccccCCCceEEEECCCceEEeccCC
Confidence 4443 345678999999999999999866 222244443221 00001234556777788899999984
Q ss_pred ce-eEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEE
Q 025649 115 EL-NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK 193 (250)
Q Consensus 115 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~ 193 (250)
.. .+.. . ..+.+ ......+|++-+ .+| +||.|+.+|.||
T Consensus 562 ~~~k~v~--------------------------------~---~~k~Y-~~~~~Fs~~aTt---~~G-~iavgs~~G~IR 601 (794)
T PF08553_consen 562 SGNKLVD--------------------------------S---QSKQY-SSKNNFSCFATT---EDG-YIAVGSNKGDIR 601 (794)
T ss_pred CCCceee--------------------------------c---ccccc-ccCCCceEEEec---CCc-eEEEEeCCCcEE
Confidence 21 0000 0 00122 233456777766 444 799999999999
Q ss_pred EEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 194 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 194 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
+||-- +. .....+.+...+|..|..+. ||++++..+ +..+.|++
T Consensus 602 Lyd~~-g~--------~AKT~lp~lG~pI~~iDvt~-DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 602 LYDRL-GK--------RAKTALPGLGDPIIGIDVTA-DGKWILATC-KTYLLLID 645 (794)
T ss_pred eeccc-ch--------hhhhcCCCCCCCeeEEEecC-CCcEEEEee-cceEEEEE
Confidence 99943 21 22234457788999999986 999887766 44455554
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.03 E-value=0.0021 Score=55.40 Aligned_cols=198 Identities=12% Similarity=0.081 Sum_probs=121.0
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 100 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 100 (250)
.+.|.++.|..+.. -++.+..+|.|.+-|..+......-. -...|.+++|+| |+..++.
T Consensus 68 d~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~eivg~--------------vd~GI~aaswS~------Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN-SICVITALGDIILVDPETLELEIVGN--------------VDNGISAASWSP------DEELLAL 126 (1265)
T ss_pred CcceEEEEEecccc-eEEEEecCCcEEEEcccccceeeeee--------------ccCceEEEeecC------CCcEEEE
Confidence 35899999999888 68888888999988887664322222 236799999999 9999999
Q ss_pred EeCCCeEEEEeC----CCceeE-------------------eeccCC--------------------CCCCccceeeccc
Q 025649 101 AKGDGVVDVINI----ESELNI-------------------SRSKST--------------------TKPLKGSQSTSKV 137 (250)
Q Consensus 101 ~~~d~~i~~~d~----~~~~~~-------------------~~~~~~--------------------~~~~~~~~~~~~~ 137 (250)
.+..+++.+-+- -..+.+ ..+... ....-..+.|--|
T Consensus 127 iT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD 206 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD 206 (1265)
T ss_pred EeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC
Confidence 888887765432 111111 000000 0112334788889
Q ss_pred ceeEEEeeeeeeccCeeeeeec---ccc----CccccEEEEEeecCCCCCcEEEEe---eCCCeEEEEecCCCcceeccc
Q 025649 138 NIRDAEMEILDQSGGKRLHLDY---SVG----GHTAAASCVAFSMFGERGKYLISG---GNDKLVKVWDCSRFQGVQTSI 207 (250)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~---~~~----~h~~~v~~~~~~p~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~ 207 (250)
|++++..........+..+... .+. .-.+.-.+++|- |.|..+++- ..|+.|.+|.-+....-
T Consensus 207 g~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWk---Psgs~iA~iq~~~sd~~IvffErNGL~hg---- 279 (1265)
T KOG1920|consen 207 GEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWK---PSGSLIAAIQCKTSDSDIVFFERNGLRHG---- 279 (1265)
T ss_pred CcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeec---CCCCeEeeeeecCCCCcEEEEecCCcccc----
Confidence 9999854433333322221110 011 112233578998 788888874 34668999986654211
Q ss_pred ccceeeeeeccCCceeEEEecCCCCCeEEE---eeCCceEEEEeC
Q 025649 208 NNDLLIKNINLNKKVNWLCTTPTESENLVV---CDTSKVVKVYSI 249 (250)
Q Consensus 208 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s---~~~d~~i~vw~~ 249 (250)
+..........+|..++|+. ++..|++ ......|++|-+
T Consensus 280 --~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 280 --EFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred --ccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEe
Confidence 22112222333489999997 7888877 455556999964
No 332
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.02 E-value=0.0006 Score=57.20 Aligned_cols=136 Identities=12% Similarity=0.112 Sum_probs=86.6
Q ss_pred cEEEEcccceeeeeeccCCCCC-eeeEEEcC-----CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSI-CSSVQFIP-----WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~-v~~l~~~~-----~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
|+-.|++.|+.+...+ .|... |..++-.. +.. .-+.|-.+..|..||.+-.... ..... .....
T Consensus 506 ly~mDLe~GKVV~eW~-~~~~~~v~~~~p~~K~aqlt~e-~tflGls~n~lfriDpR~~~~k-~v~~~-------~k~Y~ 575 (794)
T PF08553_consen 506 LYKMDLERGKVVEEWK-VHDDIPVVDIAPDSKFAQLTNE-QTFLGLSDNSLFRIDPRLSGNK-LVDSQ-------SKQYS 575 (794)
T ss_pred eEEEecCCCcEEEEee-cCCCcceeEecccccccccCCC-ceEEEECCCceEEeccCCCCCc-eeecc-------ccccc
Confidence 4567999999999999 66543 66554321 122 3456667788999999853211 01100 00001
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 155 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (250)
......|++-+ ...+||+|+.+|.||+||-- +..
T Consensus 576 ~~~~Fs~~aTt-------~~G~iavgs~~G~IRLyd~~-g~~-------------------------------------- 609 (794)
T PF08553_consen 576 SKNNFSCFATT-------EDGYIAVGSNKGDIRLYDRL-GKR-------------------------------------- 609 (794)
T ss_pred cCCCceEEEec-------CCceEEEEeCCCcEEeeccc-chh--------------------------------------
Confidence 23456677766 46789999999999999832 210
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 198 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~ 198 (250)
....+++-..+|..|..+ .+|+++++.+ +..+.+++..
T Consensus 610 -AKT~lp~lG~pI~~iDvt---~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 610 -AKTALPGLGDPIIGIDVT---ADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred -hhhcCCCCCCCeeEEEec---CCCcEEEEee-cceEEEEEEe
Confidence 112455667889999988 8898887776 4577777753
No 333
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=2e-05 Score=54.78 Aligned_cols=105 Identities=17% Similarity=0.118 Sum_probs=65.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEe
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 173 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 173 (250)
-+..+++|+.+|.|.+|.....-. ....+..-...|.++.-
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~---------------------------------------~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGA---------------------------------------HSDRVCSGEESIDLGIP 109 (238)
T ss_pred cCceEEeecccceEEEecCCccch---------------------------------------HHHhhhcccccceeccc
Confidence 467899999999999998872100 00011112223333321
Q ss_pred ecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC-CceeEEEecCCCCCeEEEe--eCCceEEEEeC
Q 025649 174 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVC--DTSKVVKVYSI 249 (250)
Q Consensus 174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~--~~d~~i~vw~~ 249 (250)
. ..++.+..+++.||.|+.|+.+.. +.+.....|+ .++..+.... .+++++.+ |.|..++.|++
T Consensus 110 ~--~~~~~~~c~~~~dg~ir~~n~~p~---------k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 110 N--GRDSSLGCVGAQDGRIRACNIKPN---------KVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred c--ccccceeEEeccCCceeeeccccC---------ceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcch
Confidence 1 134557888899999999999887 4444555666 4555554443 45567776 78888888876
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=6.7e-05 Score=61.85 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=60.1
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 102 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 102 (250)
.+++++|+|..- .|+.|-.-|.+.+|...+.+ .++.... |+.+|..+.|++ +|..++++.
T Consensus 61 hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e-~htv~~t------------h~a~i~~l~wS~------~G~~l~t~d 120 (1416)
T KOG3617|consen 61 HATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTE-THTVVET------------HPAPIQGLDWSH------DGTVLMTLD 120 (1416)
T ss_pred ehhhhccChHHH-HHhhccccceeEEEecCCce-eeeeccC------------CCCCceeEEecC------CCCeEEEcC
Confidence 467899999887 88999999999999986543 3444434 789999999999 999999999
Q ss_pred CCCeEEEEeCC
Q 025649 103 GDGVVDVINIE 113 (250)
Q Consensus 103 ~d~~i~~~d~~ 113 (250)
.-|.+.+|...
T Consensus 121 ~~g~v~lwr~d 131 (1416)
T KOG3617|consen 121 NPGSVHLWRYD 131 (1416)
T ss_pred CCceeEEEEee
Confidence 99999999876
No 335
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.93 E-value=0.0035 Score=45.51 Aligned_cols=201 Identities=12% Similarity=-0.007 Sum_probs=108.6
Q ss_pred eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649 11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA 88 (250)
Q Consensus 11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 88 (250)
+.+.++.+....--..+.|..++. ++-+.+.-| .|+.+|+.+++......++ ..-.-..++..
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~------------~~~FgEGit~~-- 98 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLP------------PRYFGEGITIL-- 98 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-T------------TT--EEEEEEE--
T ss_pred EEEEECCCCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECC------------ccccceeEEEE--
Confidence 455666622234456888877787 777777666 7999999999887777655 12223344444
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE-Eeeeeeec--cCeeeeeeccccC--
Q 025649 89 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA-EMEILDQS--GGKRLHLDYSVGG-- 163 (250)
Q Consensus 89 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~-- 163 (250)
++++..-.=.++...+||..+.+.+..+... ..=..++ .+++.+. +.|+.... +...++....+..
T Consensus 99 -----~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~--~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~ 169 (264)
T PF05096_consen 99 -----GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP--GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD 169 (264)
T ss_dssp -----TTEEEEEESSSSEEEEEETTTTEEEEEEE-S--SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE
T ss_pred -----CCEEEEEEecCCeEEEEccccceEEEEEecC--CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE
Confidence 3455555567889999999987777666544 2223333 3343333 33322221 1222222222221
Q ss_pred ---ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee------eccCCceeEEEecCCCCCe
Q 025649 164 ---HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN------INLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 164 ---h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~ 234 (250)
.-..++.+.|- +|...|=.-....|...|..++.......-..+.... ..-....+.+|+.|..+.+
T Consensus 170 ~g~pv~~LNELE~i----~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l 245 (264)
T PF05096_consen 170 NGRPVSNLNELEYI----NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRL 245 (264)
T ss_dssp TTEE---EEEEEEE----TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEE
T ss_pred CCEECCCcEeEEEE----cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEE
Confidence 12245667775 6777776666778888888888654321111111110 1113457899999977777
Q ss_pred EEEee
Q 025649 235 LVVCD 239 (250)
Q Consensus 235 l~s~~ 239 (250)
++||=
T Consensus 246 ~vTGK 250 (264)
T PF05096_consen 246 FVTGK 250 (264)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 77774
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.003 Score=52.47 Aligned_cols=167 Identities=14% Similarity=0.096 Sum_probs=100.2
Q ss_pred eeeccCCCCC-eeeEEEcCCCCeEEEEecCCC-----eEEEEEccCCC------CccceecCCCCCCCCCCcccCCCcee
Q 025649 14 KSLRAGHSSI-CSSVQFIPWKPWEVISGGLDS-----KLVMWDFSKGR------PNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 14 ~~l~~~h~~~-v~~l~~~~~~~~~l~s~s~dg-----~v~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
..++ ++... |..+.. -+++.+|++.+.|+ .|++||++.-+ ++.....-. ......+.++.
T Consensus 58 ~~fq-a~~~siv~~L~~-~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~------~~np~~~~p~s 129 (933)
T KOG2114|consen 58 RGFQ-AYEQSIVQFLYI-LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFT------IKNPTNPSPAS 129 (933)
T ss_pred ehhe-ecchhhhhHhhc-ccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeec------cCCCCCCCcce
Confidence 5566 66665 555544 44433788877665 48999986431 221111000 00011356778
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC--c-eeEeeccCCCCCCccceeecccceeE--E-E---eeeeeeccC
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIES--E-LNISRSKSTTKPLKGSQSTSKVNIRD--A-E---MEILDQSGG 152 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~---~~~~~~~~~ 152 (250)
+++++. +-+.+|+|-.||.|.++.-+- . -.........+.+|+.+.+..+++.. + | +...... .
T Consensus 130 ~l~Vs~------~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-g 202 (933)
T KOG2114|consen 130 SLAVSE------DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-G 202 (933)
T ss_pred EEEEEc------cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-C
Confidence 888887 788999999999999985432 1 12233444456889999999888772 2 1 1122222 2
Q ss_pred eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649 153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~ 200 (250)
+. .....+..|.....|.++++ ....+++++ +..+.+||....
T Consensus 203 r~-p~~~~ld~~G~~lnCss~~~---~t~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 203 RT-PSLKVLDNNGISLNCSSFSD---GTYQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred CC-cceeeeccCCccceeeecCC---CCccEEEec-CceEEEEcCCCc
Confidence 22 23445777888999999983 333344443 357999998865
No 337
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.88 E-value=0.0074 Score=47.67 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=36.8
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS 52 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~ 52 (250)
|+||+. .|+++.++. --.+.|.++.|+.+.. |+....||.++++|+.
T Consensus 63 I~iys~-sG~ll~~i~-w~~~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 63 IQIYSS-SGKLLSSIP-WDSGRIVGMGWTDDEE--LVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEECC-CCCEeEEEE-ECCCCEEEEEECCCCe--EEEEEcCCEEEEEeCC
Confidence 677775 577777766 3338999999998664 7777899999999986
No 338
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.88 E-value=0.0044 Score=44.98 Aligned_cols=135 Identities=17% Similarity=0.067 Sum_probs=75.4
Q ss_pred CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec
Q 025649 42 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 121 (250)
Q Consensus 42 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 121 (250)
.+|+|..||.++|+.+.....+. ......+..+ + ++..+++++.++.|..||..+|+.....
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~-----------~~~~~~~~~~-~------~~~~v~~~~~~~~l~~~d~~tG~~~W~~ 62 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGP-----------GIGGPVATAV-P------DGGRVYVASGDGNLYALDAKTGKVLWRF 62 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSS-----------SCSSEEETEE-E------ETTEEEEEETTSEEEEEETTTSEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCC-----------CCCCccceEE-E------eCCEEEEEcCCCEEEEEECCCCCEEEEe
Confidence 36899999999999988887531 0111111112 1 5677888889999999999999988776
Q ss_pred cCCCCCCccceeecccceeEEEe-----eeeeeccCeeeeeeccc-cCc---cccEEEEEeecCCCCCcEEEEeeCCCeE
Q 025649 122 KSTTKPLKGSQSTSKVNIRDAEM-----EILDQSGGKRLHLDYSV-GGH---TAAASCVAFSMFGERGKYLISGGNDKLV 192 (250)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~h---~~~v~~~~~~p~~~~~~~l~s~~~d~~i 192 (250)
... ..+.......++..++.. ...+...++ .+.+. ... .......... ..+..++.+..++.|
T Consensus 63 ~~~--~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~---~~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l 134 (238)
T PF13360_consen 63 DLP--GPISGAPVVDGGRVYVGTSDGSLYALDAKTGK---VLWSIYLTSSPPAGVRSSSSPA---VDGDRLYVGTSSGKL 134 (238)
T ss_dssp ECS--SCGGSGEEEETTEEEEEETTSEEEEEETTTSC---EEEEEEE-SSCTCSTB--SEEE---EETTEEEEEETCSEE
T ss_pred ecc--ccccceeeecccccccccceeeeEecccCCcc---eeeeeccccccccccccccCce---EecCEEEEEeccCcE
Confidence 653 222221222233333211 122222222 22221 111 0111222222 236778888889999
Q ss_pred EEEecCCCcc
Q 025649 193 KVWDCSRFQG 202 (250)
Q Consensus 193 ~iwd~~~~~~ 202 (250)
..+|.++++.
T Consensus 135 ~~~d~~tG~~ 144 (238)
T PF13360_consen 135 VALDPKTGKL 144 (238)
T ss_dssp EEEETTTTEE
T ss_pred EEEecCCCcE
Confidence 9999999854
No 339
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.87 E-value=0.0023 Score=45.83 Aligned_cols=113 Identities=14% Similarity=0.061 Sum_probs=79.9
Q ss_pred EEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCe
Q 025649 27 VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV 106 (250)
Q Consensus 27 l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~ 106 (250)
+...++.+.+++.||..+.+.--|..+|..+..-..+ ..+.+-++- -|++++.|+..|.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg--------------~RiE~sa~v-------vgdfVV~GCy~g~ 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG--------------VRIECSAIV-------VGDFVVLGCYSGG 74 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhC--------------ceeeeeeEE-------ECCEEEEEEccCc
Confidence 3345566658999999999999999999887766544 344444433 3778999999999
Q ss_pred EEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEe
Q 025649 107 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG 186 (250)
Q Consensus 107 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~ 186 (250)
+++.+..+|.....+... .+.+ + ..... +++..+..|
T Consensus 75 lYfl~~~tGs~~w~f~~~----------------------------------~~vk-----~-~a~~d---~~~glIycg 111 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVIL----------------------------------ETVK-----V-RAQCD---FDGGLIYCG 111 (354)
T ss_pred EEEEEecchhheeeeeeh----------------------------------hhhc-----c-ceEEc---CCCceEEEe
Confidence 999999988644332211 0111 1 11234 678899999
Q ss_pred eCCCeEEEEecCCCcce
Q 025649 187 GNDKLVKVWDCSRFQGV 203 (250)
Q Consensus 187 ~~d~~i~iwd~~~~~~~ 203 (250)
+.|+..+.-|.++..++
T Consensus 112 shd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 112 SHDGNFYALDPKTYGCV 128 (354)
T ss_pred cCCCcEEEecccccceE
Confidence 99999999999987554
No 340
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.87 E-value=0.0056 Score=48.26 Aligned_cols=100 Identities=14% Similarity=0.028 Sum_probs=60.5
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
+.-+|.++|+.+.+.+ ............ + . .++.++.++.|..+|.++|+.+.......+ ....
T Consensus 132 l~ald~~tG~~~W~~~-~~~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~------------~~~~ 195 (394)
T PRK11138 132 VYALNAEDGEVAWQTK-VAGEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVP------------SLTL 195 (394)
T ss_pred EEEEECCCCCCccccc-CCCceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCC------------cccc
Confidence 4567888888887776 322111111111 3 3 577788899999999999998888764310 0000
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 121 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 121 (250)
...-+|.. .+..++.+..+|.+..+|..+++.....
T Consensus 196 ~~~~sP~v----~~~~v~~~~~~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 196 RGESAPAT----AFGGAIVGGDNGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred cCCCCCEE----ECCEEEEEcCCCEEEEEEccCChhhhee
Confidence 00112211 2335667778899999999998766543
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00031 Score=56.71 Aligned_cols=110 Identities=14% Similarity=0.056 Sum_probs=78.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEe
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 173 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 173 (250)
.+++++.|+.-|.+++|+-..++... .+..+..+.+.....
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~---------------------------------------~~~~~~~~~~~~~~v 84 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRK---------------------------------------LKNEGATGITCVRSV 84 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhc---------------------------------------ccccCccceEEEEEe
Confidence 68999999999999999987655322 122223344555666
Q ss_pred ecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 174 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+ ++..++|.|+..|.|.++-++........ ........|...|++++|++ ++..+++|...|+|.+-.+
T Consensus 85 s---~~e~lvAagt~~g~V~v~ql~~~~p~~~~---~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 85 S---SVEYLVAAGTASGRVSVFQLNKELPRDLD---YVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred c---chhHhhhhhcCCceEEeehhhccCCCcce---eeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEe
Confidence 7 67788899999999999988874322100 01111234788999999997 9999999999999876543
No 342
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.82 E-value=3.8e-05 Score=61.14 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=87.0
Q ss_pred cEEEEcccc--e--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccC
Q 025649 2 WQIIDIRQH--C--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 2 i~iwd~~~~--~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
+.|||+.++ . .-..|..+-.....+++|..+.+ ++.+|.....+.++|++. ......+.
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~svn--------------- 194 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSVN--------------- 194 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhhh---------------
Confidence 679999876 2 22233312344566889997777 889999999999999983 23333332
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeC-CCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI-ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 155 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (250)
...+..+.+.| ..++++++-. ||.|.+||. ++-+.+.....
T Consensus 195 Tk~vqG~tVdp-----~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~-------------------------------- 236 (783)
T KOG1008|consen 195 TKYVQGITVDP-----FSPNYFCSNS-DGDIAIWDTYRNIENPLQIIL-------------------------------- 236 (783)
T ss_pred hhhcccceecC-----CCCCceeccc-cCceeeccchhhhccHHHHHh--------------------------------
Confidence 34667777877 4677887765 999999994 32111100000
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCC
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRF 200 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~ 200 (250)
+.-......+..++|+|+. .| .+++.+ ..++|+++|+..-
T Consensus 237 ---~~~N~~~~~l~~~aycPtr-tg-lla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 237 ---RNENKKPKQLFALAYCPTR-TG-LLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred ---hCCCCcccceeeEEeccCC-cc-hhhhhccCcceEEEeccccc
Confidence 0001112358899999754 34 444444 4579999998753
No 343
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0014 Score=50.39 Aligned_cols=120 Identities=14% Similarity=0.029 Sum_probs=81.2
Q ss_pred EecCCCeEEEEEccCCC-CccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee
Q 025649 39 SGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 117 (250)
Q Consensus 39 s~s~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 117 (250)
+.-.+|.+.++|-...- ....+. + .|..+|..+.++| .+..+++....|.|.-|..+...
T Consensus 117 s~~~sg~i~VvD~~~d~~q~~~fk-k-----------lH~sPV~~i~y~q------a~Ds~vSiD~~gmVEyWs~e~~~- 177 (558)
T KOG0882|consen 117 SLFKSGKIFVVDGFGDFCQDGYFK-K-----------LHFSPVKKIRYNQ------AGDSAVSIDISGMVEYWSAEGPF- 177 (558)
T ss_pred ecccCCCcEEECCcCCcCccceec-c-----------cccCceEEEEeec------cccceeeccccceeEeecCCCcc-
Confidence 33457889999976543 333333 2 2678899999998 88899999999999999987411
Q ss_pred EeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEec
Q 025649 118 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 197 (250)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~ 197 (250)
+ .+-..+.|.+.. ..-+..+...+....++.|+ |+|..+.+-+.|..|++++.
T Consensus 178 -q-------fPr~~l~~~~K~----------------eTdLy~f~K~Kt~pts~Efs---p~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 178 -Q-------FPRTNLNFELKH----------------ETDLYGFPKAKTEPTSFEFS---PDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred -c-------Cccccccccccc----------------cchhhcccccccCccceEEc---cccCcccccCcccEEEEEEe
Confidence 0 000111111111 11123344455677899999 89999999999999999999
Q ss_pred CCCccee
Q 025649 198 SRFQGVQ 204 (250)
Q Consensus 198 ~~~~~~~ 204 (250)
++++..+
T Consensus 231 KtGklvq 237 (558)
T KOG0882|consen 231 KTGKLVQ 237 (558)
T ss_pred ccchhhh
Confidence 9987554
No 344
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.77 E-value=0.00014 Score=37.71 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=30.8
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN 57 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~ 57 (250)
...|.+++|+|..+ +||.++.+|.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcCc
Confidence 45799999999999 9999999999999999 56543
No 345
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.0077 Score=44.11 Aligned_cols=171 Identities=11% Similarity=0.083 Sum_probs=98.0
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
|-+..|.++.|+|+.+ .|++......-.++=..+|+.++++.... -....++.+.. +++++
T Consensus 83 g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g------------~~DpE~Ieyig------~n~fv 143 (316)
T COG3204 83 GETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTG------------FSDPETIEYIG------GNQFV 143 (316)
T ss_pred cccccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccc------------cCChhHeEEec------CCEEE
Confidence 5556799999999999 67777777777777777899998887541 12233455554 67777
Q ss_pred EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCC
Q 025649 99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE 178 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 178 (250)
++--.++.+.++.+..+......... .-.+.........-..++|. |
T Consensus 144 i~dER~~~l~~~~vd~~t~~~~~~~~------------------------------~i~L~~~~k~N~GfEGlA~d---~ 190 (316)
T COG3204 144 IVDERDRALYLFTVDADTTVISAKVQ------------------------------KIPLGTTNKKNKGFEGLAWD---P 190 (316)
T ss_pred EEehhcceEEEEEEcCCccEEeccce------------------------------EEeccccCCCCcCceeeecC---C
Confidence 77778888888877754322211110 00111222224455677887 6
Q ss_pred CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-------CCceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649 179 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-------NKKVNWLCTTPTESENLVVCDTSKVVKVY 247 (250)
Q Consensus 179 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~d~~i~vw 247 (250)
..+.|..+-+-.-+.||......... .......+ -..|.++.+.+..+.+++-+..++.+.-.
T Consensus 191 ~~~~l~~aKEr~P~~I~~~~~~~~~l------~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Ev 260 (316)
T COG3204 191 VDHRLFVAKERNPIGIFEVTQSPSSL------SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEV 260 (316)
T ss_pred CCceEEEEEccCCcEEEEEecCCccc------ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEE
Confidence 66666666666666666655432110 00001111 12355566666556556656655555433
No 346
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.76 E-value=0.0029 Score=39.27 Aligned_cols=106 Identities=18% Similarity=0.139 Sum_probs=67.1
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeec
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY 159 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (250)
|++|++....- ...+.|++|+.|..||+|+-.. .+.
T Consensus 2 V~al~~~d~d~--dg~~eLlvGs~D~~IRvf~~~e------------------------------------------~~~ 37 (111)
T PF14783_consen 2 VTALCLFDFDG--DGENELLVGSDDFEIRVFKGDE------------------------------------------IVA 37 (111)
T ss_pred eeEEEEEecCC--CCcceEEEecCCcEEEEEeCCc------------------------------------------EEE
Confidence 45555554211 1236899999999999998763 122
Q ss_pred cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC---CeEE
Q 025649 160 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES---ENLV 236 (250)
Q Consensus 160 ~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~ 236 (250)
++.. ...|+++.-. . +..++.+..+|+|-+|+-.. .+.+.- -...+.++++...++ .-|+
T Consensus 38 Ei~e-~~~v~~L~~~---~-~~~F~Y~l~NGTVGvY~~~~----------RlWRiK--SK~~~~~~~~~D~~gdG~~eLI 100 (111)
T PF14783_consen 38 EITE-TDKVTSLCSL---G-GGRFAYALANGTVGVYDRSQ----------RLWRIK--SKNQVTSMAFYDINGDGVPELI 100 (111)
T ss_pred EEec-ccceEEEEEc---C-CCEEEEEecCCEEEEEeCcc----------eeeeec--cCCCeEEEEEEcCCCCCceEEE
Confidence 3332 3457777766 3 36788888999999998755 232221 223477777765343 2488
Q ss_pred EeeCCceEEE
Q 025649 237 VCDTSKVVKV 246 (250)
Q Consensus 237 s~~~d~~i~v 246 (250)
+|-.+|.|-+
T Consensus 101 ~GwsnGkve~ 110 (111)
T PF14783_consen 101 VGWSNGKVEV 110 (111)
T ss_pred EEecCCeEEe
Confidence 8888998753
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.71 E-value=0.0021 Score=50.24 Aligned_cols=160 Identities=11% Similarity=-0.008 Sum_probs=80.8
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe-eccC-CCCCCccceeecccceeEEEee-eeeeccCeee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKS-TTKPLKGSQSTSKVNIRDAEME-ILDQSGGKRL 155 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 155 (250)
.|+.+.+.+ +...|++|...|.|-+|.....+... .... .....-..+........+..+. ..+....+.+
T Consensus 3 ~v~~vs~a~------~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf 76 (395)
T PF08596_consen 3 SVTHVSFAP------ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGF 76 (395)
T ss_dssp -EEEEEEET------TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEE
T ss_pred eEEEEEecC------CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCccccccc
Confidence 477888887 88899999999999999876543222 1000 0000001111111111111111 1111123345
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC----CC
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP----TE 231 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~ 231 (250)
.+..-+....++|++++.| +=-+++.|..+|.+.|.|+|...-.....-.+ ..........++++.|.- .|
T Consensus 77 ~P~~l~~~~~g~vtal~~S----~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNS----DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp EEEEEE---S-SEEEEEE-----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTS
T ss_pred CchhheeccCCcEeEEecC----CCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCC
Confidence 5666666678999999987 44599999999999999998864332111001 000011233466776652 23
Q ss_pred C---CeEEEeeCCceEEEEeC
Q 025649 232 S---ENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 232 ~---~~l~s~~~d~~i~vw~~ 249 (250)
+ -.+++|...|.+.+|.+
T Consensus 152 ~ySSi~L~vGTn~G~v~~fkI 172 (395)
T PF08596_consen 152 GYSSICLLVGTNSGNVLTFKI 172 (395)
T ss_dssp SSEEEEEEEEETTSEEEEEEE
T ss_pred cccceEEEEEeCCCCEEEEEE
Confidence 3 24778888999999875
No 348
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=0.00017 Score=59.99 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=82.0
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec-----
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----- 150 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 150 (250)
+....++++|+. +.++|++|+..|.|++|++.+|........+ ...++.+.-+.+|..+++...+..-
T Consensus 1100 ~~~~fTc~afs~------~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1100 ETALFTCIAFSG------GTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred cccceeeEEeec------CCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCcceeeeeccccCchHHHh
Confidence 346678999997 8899999999999999999999877655444 4788889999999998876555442
Q ss_pred c-CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649 151 G-GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV 203 (250)
Q Consensus 151 ~-~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 203 (250)
. ...+...+.|.. -.++.|+ ...++-+.|..-....+||++++...
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFs---n~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFS---NSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred ccccccCccccccc----cceeehh---hhHHHHHhcccccceEEEecccCcHH
Confidence 1 123333344433 3578888 54444455555567899999998544
No 349
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00076 Score=56.01 Aligned_cols=110 Identities=17% Similarity=0.277 Sum_probs=79.0
Q ss_pred eeeEEEcCCCCeEEEEecC----CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649 24 CSSVQFIPWKPWEVISGGL----DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 99 (250)
Q Consensus 24 v~~l~~~~~~~~~l~s~s~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 99 (250)
-+-.+|+|..+ +|+.++- .|.|.||- ++|++..... .|-.+.+++|+| ..-.|+
T Consensus 18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--------------~P~hatSLCWHp------e~~vLa 75 (1416)
T KOG3617|consen 18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--------------YPVHATSLCWHP------EEFVLA 75 (1416)
T ss_pred ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--------------cceehhhhccCh------HHHHHh
Confidence 34567999999 8887754 47888874 4566655544 235567899998 777888
Q ss_pred EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649 100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 179 (250)
Q Consensus 100 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 179 (250)
.|=.-|.+.+|...+.+.. .....|..+|..+.|| ++
T Consensus 76 ~gwe~g~~~v~~~~~~e~h----------------------------------------tv~~th~a~i~~l~wS---~~ 112 (1416)
T KOG3617|consen 76 QGWEMGVSDVQKTNTTETH----------------------------------------TVVETHPAPIQGLDWS---HD 112 (1416)
T ss_pred hccccceeEEEecCCceee----------------------------------------eeccCCCCCceeEEec---CC
Confidence 8888899999988753311 1223577778888888 78
Q ss_pred CcEEEEeeCCCeEEEEecC
Q 025649 180 GKYLISGGNDKLVKVWDCS 198 (250)
Q Consensus 180 ~~~l~s~~~d~~i~iwd~~ 198 (250)
|..++++..-|.+.+|.+.
T Consensus 113 G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 113 GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCeEEEcCCCceeEEEEee
Confidence 8888888878888888665
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.60 E-value=0.0058 Score=48.51 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=69.2
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD 158 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (250)
....+.++| +++.+++ +.||.-.+|.....+.... +......|.+.+++.+.... ......
T Consensus 34 ~p~~ls~np------ngr~v~V-~g~geY~iyt~~~~r~k~~------G~g~~~vw~~~n~yAv~~~~------~~I~I~ 94 (443)
T PF04053_consen 34 YPQSLSHNP------NGRFVLV-CGDGEYEIYTALAWRNKAF------GSGLSFVWSSRNRYAVLESS------STIKIY 94 (443)
T ss_dssp --SEEEE-T------TSSEEEE-EETTEEEEEETTTTEEEEE------EE-SEEEE-TSSEEEEE-TT------S-EEEE
T ss_pred CCeeEEECC------CCCEEEE-EcCCEEEEEEccCCccccc------CceeEEEEecCccEEEEECC------CeEEEE
Confidence 457788888 8999888 5678888888554443332 33445777777765552111 111111
Q ss_pred ccccCcc-------ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649 159 YSVGGHT-------AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 231 (250)
Q Consensus 159 ~~~~~h~-------~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 231 (250)
+.++... ..+..+ . . |.+|+..+. +.|.+||..++ ..+...... +|..+.|++ +
T Consensus 95 kn~~~~~~k~i~~~~~~~~I--f---~-G~LL~~~~~-~~i~~yDw~~~---------~~i~~i~v~--~vk~V~Ws~-~ 155 (443)
T PF04053_consen 95 KNFKNEVVKSIKLPFSVEKI--F---G-GNLLGVKSS-DFICFYDWETG---------KLIRRIDVS--AVKYVIWSD-D 155 (443)
T ss_dssp ETTEE-TT-----SS-EEEE--E-----SSSEEEEET-TEEEEE-TTT-----------EEEEESS---E-EEEEE-T-T
T ss_pred EcCccccceEEcCCcccceE--E---c-CcEEEEECC-CCEEEEEhhHc---------ceeeEEecC--CCcEEEEEC-C
Confidence 1221111 112222 2 2 677776664 48999999997 444444322 388999997 8
Q ss_pred CCeEEEeeCCceEEEEeC
Q 025649 232 SENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 232 ~~~l~s~~~d~~i~vw~~ 249 (250)
+++++..+.+ .+.+++.
T Consensus 156 g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 156 GELVALVTKD-SIYILKY 172 (443)
T ss_dssp SSEEEEE-S--SEEEEEE
T ss_pred CCEEEEEeCC-eEEEEEe
Confidence 8888888755 4666653
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.59 E-value=0.024 Score=44.90 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=38.1
Q ss_pred eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce
Q 025649 45 KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 116 (250)
Q Consensus 45 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 116 (250)
.|++|+.. |+.+..+... .+.+.++.|+. ...|++...||.+++||+....
T Consensus 62 ~I~iys~s-G~ll~~i~w~-------------~~~iv~~~wt~-------~e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWD-------------SGRIVGMGWTD-------DEELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCC-CCEeEEEEEC-------------CCCEEEEEECC-------CCeEEEEEcCCEEEEEeCCCce
Confidence 47888774 6666666644 37899999985 5566677799999999997544
No 352
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.57 E-value=0.0046 Score=47.24 Aligned_cols=179 Identities=12% Similarity=0.030 Sum_probs=98.6
Q ss_pred CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC-CCCCEEEEEeC----------CCeEEEEeC
Q 025649 44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD-KTNKICVVAKG----------DGVVDVINI 112 (250)
Q Consensus 44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~l~~~~~----------d~~i~~~d~ 112 (250)
..|++.|..+.+.+..+.+. ....+.++......-.. ....++++|.. .|.|.++++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i 69 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEI 69 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEE
T ss_pred cEEEEEeCCCCeEEEEEECC------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEE
Confidence 36888898888877777765 34455555433210000 02567777743 289999999
Q ss_pred CCc-----eeEeeccCCCCCCccceeecccceeEEEee----eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEE
Q 025649 113 ESE-----LNISRSKSTTKPLKGSQSTSKVNIRDAEME----ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL 183 (250)
Q Consensus 113 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l 183 (250)
... +............+.++.-- ++.+++..+ .++............+..+ ..+.++... ++++
T Consensus 70 ~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~~-----~~~I 142 (321)
T PF03178_consen 70 SESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSP-FYITSLSVF-----KNYI 142 (321)
T ss_dssp CSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BS-SSEEEEEEE-----TTEE
T ss_pred EcccccceEEEEEEEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecce-EEEEEEecc-----ccEE
Confidence 984 22222222334667776655 445554322 1222222212222333322 256666654 4689
Q ss_pred EEeeCCCeEEEEecCCCcceecccccceeeee-eccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 184 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 184 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+.|..-..+.++..+.... .+.... ......++++.+.+ +++.++.++.+|.+.++.+
T Consensus 143 ~vgD~~~sv~~~~~~~~~~-------~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 143 LVGDAMKSVSLLRYDEENN-------KLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EEEESSSSEEEEEEETTTE--------EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE
T ss_pred EEEEcccCEEEEEEEccCC-------EEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEE
Confidence 9998888888875554211 121111 12244578888875 4468999999999998864
No 353
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.56 E-value=0.0041 Score=49.11 Aligned_cols=120 Identities=11% Similarity=-0.039 Sum_probs=71.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEE--EEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM--WDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+.++|+++++....+. ..+.-..-+|+|||+.++++...||...| .|+..+.. ..+... ...
T Consensus 220 i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~-------------~gi 283 (425)
T COG0823 220 IYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNG-------------FGI 283 (425)
T ss_pred EEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccC-------------Ccc
Confidence 5677888776655554 33344567899999977777788877554 56655552 223311 112
Q ss_pred eeEEecCCCcccCCCCCEEEEEe-CCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee
Q 025649 80 VHAIAIPDADMLDKTNKICVVAK-GDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 145 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~-~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (250)
-..-.|+| +|+.++-.+ ..| .|.++|++.+......... ..-....++|||++++...
T Consensus 284 ~~~Ps~sp------dG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~--~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 284 NTSPSWSP------DGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG--GGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred ccCccCCC------CCCEEEEEeCCCCCcceEEECCCCCceeEeeccC--CCCcCccCCCCCCEEEEEe
Confidence 22456777 888876664 444 4566666665442222111 2222788999999998544
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.46 E-value=0.022 Score=41.50 Aligned_cols=162 Identities=10% Similarity=0.029 Sum_probs=87.3
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeee--
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQ-- 149 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-- 149 (250)
..+.+++|.| .++.++++....+.|..++.+ |+.+..+..........+++..++.++++. -....
T Consensus 22 ~e~SGLTy~p-----d~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 22 DELSGLTYNP-----DTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp S-EEEEEEET-----TTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CCccccEEcC-----CCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 4589999998 235677888888999888975 666766655545677788888888777642 11111
Q ss_pred --ccC--eeeeee--ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC---CcceecccccceeeeeeccCC
Q 025649 150 --SGG--KRLHLD--YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR---FQGVQTSINNDLLIKNINLNK 220 (250)
Q Consensus 150 --~~~--~~~~~~--~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~ 220 (250)
... ...+.+ .....+...+..++|+ +.++.|+.+-+..-..+|.++. ............ ........
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D---~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 171 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYD---PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDL-DDDKLFVR 171 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEE---TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHH-H-HT--SS
T ss_pred cccccchhhceEEecccccCCCcceEEEEEc---CCCCEEEEEeCCCChhhEEEccccCccceeecccccc-ccccceec
Confidence 011 111111 1112345668999999 6666666777776677777664 111100000000 00112233
Q ss_pred ceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 221 KVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 221 ~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.+.++.++|..+.+++.+..+..|..+|.
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECC
Confidence 57788899988888888888888877764
No 355
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.45 E-value=0.012 Score=45.62 Aligned_cols=169 Identities=9% Similarity=0.021 Sum_probs=88.6
Q ss_pred cCCCCeEEEEe---------cCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649 30 IPWKPWEVISG---------GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 100 (250)
Q Consensus 30 ~~~~~~~l~s~---------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 100 (250)
|||++ +++.. +..+.+.++|+++++....... ...+....|+| +|+.++.
T Consensus 1 S~d~~-~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--------------~~~~~~~~~sP------~g~~~~~ 59 (353)
T PF00930_consen 1 SPDGK-FVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--------------PPKLQDAKWSP------DGKYIAF 59 (353)
T ss_dssp -TTSS-EEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--------------ETTBSEEEE-S------SSTEEEE
T ss_pred CCCCC-eEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--------------ccccccceeec------CCCeeEE
Confidence 57777 34332 2346788999988654433321 25678899999 9999988
Q ss_pred EeCCCeEEEEeCCCceeEeeccCCC----------------CCCccceeecccceeEEEeeeeeeccCeeeeeeccccCc
Q 025649 101 AKGDGVVDVINIESELNISRSKSTT----------------KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH 164 (250)
Q Consensus 101 ~~~d~~i~~~d~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 164 (250)
.. ++.|.++++.++.....-.... -..-..+.||||+++++ .-..|....+..........+
T Consensus 60 v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la-~~~~d~~~v~~~~~~~~~~~~ 137 (353)
T PF00930_consen 60 VR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLA-FLRFDEREVPEYPLPDYSPPD 137 (353)
T ss_dssp EE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEE-EEEEE-TTS-EEEEEEESSST
T ss_pred Ee-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEE-EEEECCcCCceEEeeccCCcc
Confidence 85 5789999988765443222110 12345678999999999 444454544444433333332
Q ss_pred c--ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC
Q 025649 165 T--AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 233 (250)
Q Consensus 165 ~--~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 233 (250)
. ..+..+.+- .-|.--. .-.+.|+|+.+++.... ........-..-+..+.|.+ +++
T Consensus 138 ~~yp~~~~~~YP---k~G~~np----~v~l~v~~~~~~~~~~~----~~~~~~~~~~~yl~~v~W~~-d~~ 196 (353)
T PF00930_consen 138 SQYPEVESIRYP---KAGDPNP----RVSLFVVDLASGKTTEL----DPPNSLNPQDYYLTRVGWSP-DGK 196 (353)
T ss_dssp ESS-EEEEEE-----BTTS-------EEEEEEEESSSTCCCEE-------HHHHTSSEEEEEEEEEE-TTE
T ss_pred ccCCcccccccC---CCCCcCC----ceEEEEEECCCCcEEEe----eeccccCCCccCcccceecC-CCc
Confidence 2 245566652 2222111 11466788887643210 00000012233467778876 555
No 356
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.0058 Score=48.27 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=89.4
Q ss_pred EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc-CCCCCEEEEEeCCCeEEEEeCCC
Q 025649 36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML-DKTNKICVVAKGDGVVDVINIES 114 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~l~~~~~d~~i~~~d~~~ 114 (250)
+|.++.....|.--|++.|+.+..++++ +.|.-+.+.|-.-+ ......-+.|-.|+.|.-||.+-
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~--------------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv 413 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFE--------------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV 413 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeecc--------------CCcceeeccCCcchhcccccccEEeecCCceEEecccc
Confidence 4556666677888899999999999866 33666666661000 00111224455678888888872
Q ss_pred ceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEE
Q 025649 115 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV 194 (250)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~i 194 (250)
.-.- .|+ .. .-+.+.. ...-.|.+-. .+ -+++.||.+|.|++
T Consensus 414 ~~~~---------------------kl~---------~~---q~kqy~~-k~nFsc~aTT---~s-G~IvvgS~~GdIRL 455 (644)
T KOG2395|consen 414 QGKN---------------------KLA---------VV---QSKQYST-KNNFSCFATT---ES-GYIVVGSLKGDIRL 455 (644)
T ss_pred cCcc---------------------eee---------ee---ecccccc-ccccceeeec---CC-ceEEEeecCCcEEe
Confidence 1100 000 00 0012222 2234555544 33 48999999999999
Q ss_pred EecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 195 WDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 195 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
||- .+. .....+.+...+|..+.... +|++|+..+ +..+.+-+
T Consensus 456 Ydr-i~~--------~AKTAlPgLG~~I~hVdvta-dGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 456 YDR-IGR--------RAKTALPGLGDAIKHVDVTA-DGKWILATC-KTYLLLID 498 (644)
T ss_pred ehh-hhh--------hhhhcccccCCceeeEEeec-cCcEEEEec-ccEEEEEE
Confidence 997 332 22335567888999998886 888776655 44455544
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0012 Score=52.92 Aligned_cols=71 Identities=10% Similarity=0.120 Sum_probs=59.2
Q ss_pred ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee-EEEecCCCCCeEEEeeCCceE
Q 025649 166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN-WLCTTPTESENLVVCDTSKVV 244 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i 244 (250)
..+.-+.|+ |.-.++|.+..+|.|.+..++. +.+-.+.-|...+. +++|.| ||+.|+.|-.||+|
T Consensus 21 ~~i~~~ewn---P~~dLiA~~t~~gelli~R~n~----------qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I 86 (665)
T KOG4640|consen 21 INIKRIEWN---PKMDLIATRTEKGELLIHRLNW----------QRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTI 86 (665)
T ss_pred cceEEEEEc---CccchhheeccCCcEEEEEecc----------ceeEeccCCCCccceeeeecC-CCCEEEEEecCCeE
Confidence 457788999 7889999999999999998885 44445555666776 999998 89999999999999
Q ss_pred EEEeCC
Q 025649 245 KVYSIS 250 (250)
Q Consensus 245 ~vw~~~ 250 (250)
++-|++
T Consensus 87 ~L~Dve 92 (665)
T KOG4640|consen 87 RLHDVE 92 (665)
T ss_pred EEEEcc
Confidence 999864
No 358
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.0017 Score=55.23 Aligned_cols=70 Identities=26% Similarity=0.414 Sum_probs=53.2
Q ss_pred cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE---EecCCCCCeEEEeeCC
Q 025649 165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL---CTTPTESENLVVCDTS 241 (250)
Q Consensus 165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~l~s~~~d 241 (250)
.++|++++|+ .+|.+++.|-.+|.|.+||+..+ ++++.+..|..+..++ .+.. ++..++++...
T Consensus 130 ~~~Vtsvafn---~dg~~l~~G~~~G~V~v~D~~~~---------k~l~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~ 196 (1206)
T KOG2079|consen 130 QGPVTSVAFN---QDGSLLLAGLGDGHVTVWDMHRA---------KILKVITEHGAPVTGVIFVGRTS-QNSKLLTSDTG 196 (1206)
T ss_pred CCcceeeEec---CCCceeccccCCCcEEEEEccCC---------cceeeeeecCCccceEEEEEEeC-CCcEEEEccCC
Confidence 5789999999 89999999999999999999997 5555666666554444 4443 55568888877
Q ss_pred ceEEEEeC
Q 025649 242 KVVKVYSI 249 (250)
Q Consensus 242 ~~i~vw~~ 249 (250)
|. +|++
T Consensus 197 Gs--f~~l 202 (1206)
T KOG2079|consen 197 GS--FWKL 202 (1206)
T ss_pred Cc--eEEE
Confidence 75 5653
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.048 Score=42.82 Aligned_cols=175 Identities=13% Similarity=0.072 Sum_probs=110.5
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec--CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG--LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
|.+.|..+.+.......+. .-..++++|+++.+.++-. .++++.+.|..+++.......+ ..+
T Consensus 98 v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-------------~~P 162 (381)
T COG3391 98 VSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-------------NTP 162 (381)
T ss_pred EEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-------------CCc
Confidence 5677777666666665233 5679999999984455545 3789999999988888776644 122
Q ss_pred eeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCceeEe-ec--cCCCCCCccceeecccceeEEEeeeee--ec---
Q 025649 80 VHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNIS-RS--KSTTKPLKGSQSTSKVNIRDAEMEILD--QS--- 150 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--- 150 (250)
..+++.| +++.+.+.. .++.|.+.|........ .. ..........+.++|+|..+......+ ..
T Consensus 163 -~~~a~~p------~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 163 -TGVAVDP------DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred -ceEEECC------CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 7888998 888665554 78999999977655443 10 122235567789999998766322221 11
Q ss_pred -cCeeeeeecc-ccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCc
Q 025649 151 -GGKRLHLDYS-VGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQ 201 (250)
Q Consensus 151 -~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~ 201 (250)
+......... ..........+.++ |+|.++.... ..+.+.+-|..+..
T Consensus 236 id~~~~~v~~~~~~~~~~~~~~v~~~---p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 236 IDTATGNVTATDLPVGSGAPRGVAVD---PAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred EeCCCceEEEeccccccCCCCceeEC---CCCCEEEEEecCCCeEEEEeCCCCc
Confidence 1111111111 11111134567788 8888887774 45889999988853
No 360
>PHA02713 hypothetical protein; Provisional
Probab=97.29 E-value=0.068 Score=44.24 Aligned_cols=26 Identities=8% Similarity=0.226 Sum_probs=18.8
Q ss_pred CCCEEEEEeCCC-----eEEEEeCCCceeEe
Q 025649 94 TNKICVVAKGDG-----VVDVINIESELNIS 119 (250)
Q Consensus 94 ~~~~l~~~~~d~-----~i~~~d~~~~~~~~ 119 (250)
++++.+.|+.++ .+..||..+++...
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 678888887654 47889998765443
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.059 Score=42.33 Aligned_cols=189 Identities=12% Similarity=0.067 Sum_probs=115.9
Q ss_pred eeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC
Q 025649 24 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 103 (250)
Q Consensus 24 v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 103 (250)
-..+++++.+....++...++.|.+.|..+.+.......+ .....++++| +++.+.++..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--------------~~P~~~~~~~------~~~~vYV~n~ 135 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--------------LGPVGLAVDP------DGKYVYVANA 135 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--------------cCCceEEECC------CCCEEEEEec
Confidence 3467888888756677777789999998887777777655 2457788888 7777666644
Q ss_pred ---CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeeeeeec-----cccCccccEEEE
Q 025649 104 ---DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDY-----SVGGHTAAASCV 171 (250)
Q Consensus 104 ---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~h~~~v~~~ 171 (250)
++++.+.|..+++......... .+ ..++++|+|..+......+. .+.......+ ..... .....+
T Consensus 136 ~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i 212 (381)
T COG3391 136 GNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGI 212 (381)
T ss_pred ccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceE
Confidence 7999999999988877744432 22 88999999997764321111 1111111111 11111 223567
Q ss_pred EeecCCCCCcEEEEeeC---CCeEEEEecCCCcceecccccceeeeeeccCC-ceeEEEecCCCCCeEEEee-CCceEEE
Q 025649 172 AFSMFGERGKYLISGGN---DKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENLVVCD-TSKVVKV 246 (250)
Q Consensus 172 ~~~p~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~-~d~~i~v 246 (250)
.++ ++|.++..... ++.+...|..++. .......-.. ....+...| +|..+.+.. ..+.+.+
T Consensus 213 ~v~---~~g~~~yV~~~~~~~~~v~~id~~~~~---------v~~~~~~~~~~~~~~v~~~p-~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 213 AVD---PDGNRVYVANDGSGSNNVLKIDTATGN---------VTATDLPVGSGAPRGVAVDP-AGKAAYVANSQGGTVSV 279 (381)
T ss_pred EEC---CCCCEEEEEeccCCCceEEEEeCCCce---------EEEeccccccCCCCceeECC-CCCEEEEEecCCCeEEE
Confidence 788 78886655443 3689999988863 2222111111 344566776 676666653 3355555
Q ss_pred Ee
Q 025649 247 YS 248 (250)
Q Consensus 247 w~ 248 (250)
-|
T Consensus 280 id 281 (381)
T COG3391 280 ID 281 (381)
T ss_pred Ee
Confidence 44
No 362
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.26 E-value=0.051 Score=43.34 Aligned_cols=132 Identities=14% Similarity=-0.000 Sum_probs=65.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCe-eee------------eeccc
Q 025649 95 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK-RLH------------LDYSV 161 (250)
Q Consensus 95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~ 161 (250)
|.+|...+. +.|.+||+.+++.+..+... .+..+.|+++|.+++..+........ ..+ ....+
T Consensus 117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKSS-DFICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEECC-CCEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEE
Confidence 666766655 48999999999988888764 48899999999998843322222111 000 11111
Q ss_pred cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC
Q 025649 162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 241 (250)
Q Consensus 162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 241 (250)
..-...|.+..|. .+ -++.|.. . .|+. +..+. . ........+++-+.+.+ ..+.+.....|
T Consensus 193 ~E~~~~IkSg~W~---~d-~fiYtT~-~-~lkY--l~~Ge---------~-~~i~~ld~~~yllgy~~-~~~~ly~~Dr~ 253 (443)
T PF04053_consen 193 HEISERIKSGCWV---ED-CFIYTTS-N-HLKY--LVNGE---------T-GIIAHLDKPLYLLGYLP-KENRLYLIDRD 253 (443)
T ss_dssp EEE-S--SEEEEE---TT-EEEEE-T-T-EEEE--EETTE---------E-EEEEE-SS--EEEEEET-TTTEEEEE-TT
T ss_pred EEecceeEEEEEE---cC-EEEEEcC-C-eEEE--EEcCC---------c-ceEEEcCCceEEEEEEc-cCCEEEEEECC
Confidence 1113467777776 43 4444443 2 6666 44432 1 12222244566666666 44578888888
Q ss_pred ceEEEEeC
Q 025649 242 KVVKVYSI 249 (250)
Q Consensus 242 ~~i~vw~~ 249 (250)
+.|..+.+
T Consensus 254 ~~v~~~~l 261 (443)
T PF04053_consen 254 GNVISYEL 261 (443)
T ss_dssp --EEEEE-
T ss_pred CCEEEEEE
Confidence 88887765
No 363
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.26 E-value=0.035 Score=45.88 Aligned_cols=202 Identities=14% Similarity=0.074 Sum_probs=97.7
Q ss_pred cEEEEcccceee--eeeccCCCCCeeeEEEcCCCCeEEEEecCC------CeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649 2 WQIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGLD------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 2 i~iwd~~~~~~~--~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 73 (250)
+..+|..+++.. ..+. +...-.++++..+ . +.++|+.| .++..||..+++-...-...
T Consensus 303 ve~yd~~~~~w~~~a~m~--~~r~~~~~~~~~~-~-lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~---------- 368 (571)
T KOG4441|consen 303 VECYDPKTNEWSSLAPMP--SPRCRVGVAVLNG-K-LYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN---------- 368 (571)
T ss_pred eEEecCCcCcEeecCCCC--cccccccEEEECC-E-EEEEccccCCCcccceEEEecCCCCceeccCCcc----------
Confidence 566777766432 3333 2223445555544 4 78889888 35778888776532211100
Q ss_pred ccCCCceeEEecCCCcccCCCCCEEEEEeCCC-----eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee
Q 025649 74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-----VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 148 (250)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (250)
.+..-.+++.. +|.+.++|+.|| ++..||..+.+......... ..-..-...-+|...+ +|.++
T Consensus 369 --~~R~~~~v~~l-------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi-~GG~~ 437 (571)
T KOG4441|consen 369 --TKRSDFGVAVL-------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYI-IGGGD 437 (571)
T ss_pred --CccccceeEEE-------CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEE-EcCcC
Confidence 11111223322 688889999886 46778877655333222211 1111222233444444 55544
Q ss_pred eccC--eeee----------eeccccCccccEEEEEeecCCCCCcEEEEeeCCC-----eEEEEecCCCcceecccccce
Q 025649 149 QSGG--KRLH----------LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK-----LVKVWDCSRFQGVQTSINNDL 211 (250)
Q Consensus 149 ~~~~--~~~~----------~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~ 211 (250)
.... ...+ .+..+..-... ..++.- ++.+.+.|+.|+ +|..||..+.+.. .
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~~----~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~-------~ 505 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAVL----NGKIYVVGGFDGTSALSSVERYDPETNQWT-------M 505 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCccccccc-ceEEEE----CCEEEEECCccCCCccceEEEEcCCCCcee-------E
Confidence 4431 1111 11111111111 123333 567888888776 3777888875432 1
Q ss_pred eeeeeccCCceeEEEecCCCCCeEEEeeCCce
Q 025649 212 LIKNINLNKKVNWLCTTPTESENLVVCDTSKV 243 (250)
Q Consensus 212 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 243 (250)
+ ........-..++. .++...++|+.||.
T Consensus 506 v-~~m~~~rs~~g~~~--~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 506 V-APMTSPRSAVGVVV--LGGKLYAVGGFDGN 534 (571)
T ss_pred c-ccCccccccccEEE--ECCEEEEEecccCc
Confidence 1 11111112222222 26677788887764
No 364
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.21 E-value=0.071 Score=41.91 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=55.3
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc------cee-------cCC-C----C----CCC--------CCC
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK------IVN-------FGL-P----E----NNG--------NAG 72 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~------~~~-------~~~-~----~----~~~--------~~~ 72 (250)
.|+.+.|.++.. -|+.|...|.|.||.....+.-. ... ... + + ... ...
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 588999999977 79999999999999876543221 000 000 0 0 000 011
Q ss_pred cccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEee
Q 025649 73 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 120 (250)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 120 (250)
+....+.|++++.+ +=.++++|+.+|.+.|.|++....+..
T Consensus 82 ~~~~~g~vtal~~S-------~iGFvaigy~~G~l~viD~RGPavI~~ 122 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-------DIGFVAIGYESGSLVVIDLRGPAVIYN 122 (395)
T ss_dssp E---S-SEEEEEE--------BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred eeccCCcEeEEecC-------CCcEEEEEecCCcEEEEECCCCeEEee
Confidence 11234677888877 677999999999999999998776654
No 365
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.17 E-value=0.074 Score=41.34 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=36.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP 56 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~ 56 (250)
+.|+|+++++...... ....+....|||+|+ .++-.. ++.|.+++..+++.
T Consensus 25 y~i~d~~~~~~~~l~~--~~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 25 YYIYDIETGEITPLTP--PPPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp EEEEETTTTEEEESS---EETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEE
T ss_pred EEEEecCCCceEECcC--CccccccceeecCCC-eeEEEe-cCceEEEECCCCCe
Confidence 4689999877654444 367889999999999 566554 57899999877643
No 366
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.10 E-value=0.11 Score=42.29 Aligned_cols=111 Identities=17% Similarity=0.091 Sum_probs=63.3
Q ss_pred cEEEEcccceeeeeeccCCCCC-------------------e-eeEEEcCCCCeEEEEecCCC-----------------
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSI-------------------C-SSVQFIPWKPWEVISGGLDS----------------- 44 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~-------------------v-~~l~~~~~~~~~l~s~s~dg----------------- 44 (250)
|.-.|.++|+.+.+++...... | ...++.+.+. +++.++.++
T Consensus 177 v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~ 255 (488)
T cd00216 177 LRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYT 255 (488)
T ss_pred EEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCce
Confidence 3456888888887776111110 1 1234444455 577776554
Q ss_pred -eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC---EEEEEeCCCeEEEEeCCCceeEee
Q 025649 45 -KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK---ICVVAKGDGVVDVINIESELNISR 120 (250)
Q Consensus 45 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~ 120 (250)
.|.-.|..+|+.+..++....+.-. .....+..+..+. + .++. .+++++.+|.+...|.++|+.+..
T Consensus 256 ~~l~Ald~~tG~~~W~~~~~~~~~~~--~~~~s~p~~~~~~--~-----~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 256 DSIVALDADTGKVKWFYQTTPHDLWD--YDGPNQPSLADIK--P-----KDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred eeEEEEcCCCCCEEEEeeCCCCCCcc--cccCCCCeEEecc--c-----cCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 7999999999998887643110000 0000000111111 0 1233 678888999999999999988765
Q ss_pred cc
Q 025649 121 SK 122 (250)
Q Consensus 121 ~~ 122 (250)
..
T Consensus 327 ~~ 328 (488)
T cd00216 327 RP 328 (488)
T ss_pred eE
Confidence 43
No 367
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.07 E-value=0.081 Score=40.15 Aligned_cols=107 Identities=14% Similarity=0.200 Sum_probs=64.8
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec----------CCCeEEEEEccCCCCccceecCCCCCCCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG----------LDSKLVMWDFSKGRPNKIVNFGLPENNGNA 71 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 71 (250)
+.++|..+++.+..+..+.. -.+..+|+++ .+++++ ..-.|.+||..+.+....+..+.. +.
T Consensus 19 v~viD~d~~k~lGmi~~g~~---~~~~~spdgk-~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k----~R 90 (342)
T PF06433_consen 19 VYVIDADSGKLLGMIDTGFL---GNVALSPDGK-TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK----PR 90 (342)
T ss_dssp EEEEETTTTEEEEEEEEESS---EEEEE-TTSS-EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-----B
T ss_pred EEEEECCCCcEEEEeecccC---CceeECCCCC-EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc----ch
Confidence 67888889998888773333 3466899998 566542 234699999999887777665510 00
Q ss_pred CcccCCCceeEEecCCCcccCCCCCEEEEEe--CCCeEEEEeCCCceeEeeccCC
Q 025649 72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKST 124 (250)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~ 124 (250)
... -...+..+++. +++++++.. --..|.|.|+..++...++..+
T Consensus 91 ~~~--~~~~~~~~ls~------dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P 137 (342)
T PF06433_consen 91 AQV--VPYKNMFALSA------DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP 137 (342)
T ss_dssp --B--S--GGGEEE-T------TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT
T ss_pred hee--cccccceEEcc------CCcEEEEEccCCCCeEEEEECCCCceeeeecCC
Confidence 000 01223345555 777776653 3456788888877766655443
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.0095 Score=47.13 Aligned_cols=124 Identities=10% Similarity=0.009 Sum_probs=81.1
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCe-EE-----EEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW-EV-----ISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQC 74 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~-~l-----~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 74 (250)
|+-.|++.|+.+...+ -|.+ |.-+.+.|+.+. .| +.|-.|..|.-||.+- +..+..+..+. . .
T Consensus 358 l~klDIE~GKIVeEWk-~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k----q----y 427 (644)
T KOG2395|consen 358 LYKLDIERGKIVEEWK-FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK----Q----Y 427 (644)
T ss_pred ceeeecccceeeeEee-ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc----c----c
Confidence 3446888999999988 5555 888888887641 11 2355577888899873 22111111010 0 0
Q ss_pred cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE
Q 025649 75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 143 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (250)
.......|.+-. ...++++|+.+|.|++||- .+.............|..+..+.+|+.++.
T Consensus 428 ~~k~nFsc~aTT-------~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 428 STKNNFSCFATT-------ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILA 488 (644)
T ss_pred ccccccceeeec-------CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEE
Confidence 012233444444 4678999999999999998 666666666666788999999999998873
No 369
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.04 E-value=0.036 Score=46.86 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=33.1
Q ss_pred CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649 163 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 201 (250)
Q Consensus 163 ~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~ 201 (250)
.+...|..+.|+|+++++..|+.-..|+++|+||+....
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 345689999999888778899998999999999997654
No 370
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.079 Score=38.93 Aligned_cols=175 Identities=10% Similarity=0.027 Sum_probs=96.1
Q ss_pred EEEEcccceeeeeeccCCCCC--eeeEEEcCCCCeEEEEecCC-----CeEEEEEccCC-CCccceecCCCCCCCCCCcc
Q 025649 3 QIIDIRQHCLYKSLRAGHSSI--CSSVQFIPWKPWEVISGGLD-----SKLVMWDFSKG-RPNKIVNFGLPENNGNAGQC 74 (250)
Q Consensus 3 ~iwd~~~~~~~~~l~~~h~~~--v~~l~~~~~~~~~l~s~s~d-----g~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~ 74 (250)
.++|....+...++. ..++. --.=.|||||. +|...-.| |.|-+||.+.+ +.+..+..
T Consensus 94 ~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~-~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t------------ 159 (366)
T COG3490 94 MVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGR-LLYATENDFDPNRGVIGVYDAREGFQRVGEFST------------ 159 (366)
T ss_pred EEECCCCCcCcEEEe-cccCceeecccccCCCCc-EEEeecCCCCCCCceEEEEecccccceeccccc------------
Confidence 467777666555543 22211 11235999999 56554333 78999999743 33333331
Q ss_pred cCCCceeEEecCCCcccCCCCCEEEEEeC------------------CCeEEEEeCCCceeEeeccCC---CCCCcccee
Q 025649 75 YNPAFVHAIAIPDADMLDKTNKICVVAKG------------------DGVVDVINIESELNISRSKST---TKPLKGSQS 133 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~ 133 (250)
+--.-+.+.+.+ ||+.++.+.. .-.+.+.|..++..+.+...+ ....+..++
T Consensus 160 -~GiGpHev~lm~------DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld 232 (366)
T COG3490 160 -HGIGPHEVTLMA------DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLD 232 (366)
T ss_pred -CCcCcceeEEec------CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeee
Confidence 223346777777 8998887743 113445555555554433322 235677888
Q ss_pred ecccceeEEEeeeeeecc--C-------eeeeeecccc-------CccccEEEEEeecCCCCCcEE-EEeeCCCeEEEEe
Q 025649 134 TSKVNIRDAEMEILDQSG--G-------KRLHLDYSVG-------GHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWD 196 (250)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~-------~h~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd 196 (250)
..+||...+. +-+.+-- . ...+.+.-+. ...+.|-+++.+ .+..++ +|.=..+...+||
T Consensus 233 ~g~dgtvwfg-cQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n---~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 233 IGRDGTVWFG-CQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN---RRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eCCCCcEEEE-EEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeec---ccCCeEEEecCCCCeEEEEE
Confidence 8999988772 2221110 0 0111111111 123456777776 444444 4444566889999
Q ss_pred cCCCcc
Q 025649 197 CSRFQG 202 (250)
Q Consensus 197 ~~~~~~ 202 (250)
..++..
T Consensus 309 a~tG~v 314 (366)
T COG3490 309 AATGAV 314 (366)
T ss_pred cCCCcE
Confidence 999843
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.96 E-value=0.17 Score=42.06 Aligned_cols=187 Identities=16% Similarity=0.085 Sum_probs=90.7
Q ss_pred CCeeeEEEcCCCCeEEEEec-----CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC
Q 025649 22 SICSSVQFIPWKPWEVISGG-----LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 96 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (250)
..+...+++|+|+...++.. .|+.-.||-...+.....+..+ .....-.|+| +|+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--------------~~~t~PsWsp------DG~ 409 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--------------HSLTRPSWSL------DAD 409 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--------------CCCCCceECC------CCC
Confidence 46788999999984333331 2444344433222222333322 2366778887 777
Q ss_pred EEEEEeCC------------CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec--------cCe-ee
Q 025649 97 ICVVAKGD------------GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS--------GGK-RL 155 (250)
Q Consensus 97 ~l~~~~~d------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~ 155 (250)
.+.+.... +.+.+.+++.+.... .....+..+.|||||..++.+..-... ... ..
T Consensus 410 ~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l 485 (591)
T PRK13616 410 AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYAL 485 (591)
T ss_pred ceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceee
Confidence 66665432 233333443332221 223579999999999988752211111 011 11
Q ss_pred eeecccc-CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649 156 HLDYSVG-GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 156 ~~~~~~~-~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 234 (250)
.....+. +-...+.++.|. .++.++ .+..++...+|.+.-.... ...........++..++-.+ + .
T Consensus 486 ~~~~~l~~~l~~~~~~l~W~---~~~~L~-V~~~~~~~~v~~v~vDG~~------~~~~~~~n~~~~v~~vaa~~-~--~ 552 (591)
T PRK13616 486 TNPREVGPGLGDTAVSLDWR---TGDSLV-VGRSDPEHPVWYVNLDGSN------SDALPSRNLSAPVVAVAASP-S--T 552 (591)
T ss_pred cccEEeecccCCccccceEe---cCCEEE-EEecCCCCceEEEecCCcc------ccccCCCCccCceEEEecCC-c--e
Confidence 1111122 222335788998 777754 5554454445544332110 11001111245566676654 2 3
Q ss_pred EEEeeCCceEE
Q 025649 235 LVVCDTSKVVK 245 (250)
Q Consensus 235 l~s~~~d~~i~ 245 (250)
++....++.+.
T Consensus 553 iyv~~~~g~~~ 563 (591)
T PRK13616 553 VYVTDARAVLQ 563 (591)
T ss_pred EEEEcCCceEE
Confidence 55555566443
No 372
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.93 E-value=0.0051 Score=31.89 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=27.9
Q ss_pred cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC
Q 025649 165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 198 (250)
Q Consensus 165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~ 198 (250)
...|.+++|+ |...++|.++.||.|.++.+.
T Consensus 11 ~~~v~~~~w~---P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWC---PTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEEC---CCCCEEEEEECCCeEEEEECC
Confidence 3569999999 889999999999999999983
No 373
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.69 E-value=0.18 Score=38.36 Aligned_cols=127 Identities=15% Similarity=0.136 Sum_probs=78.5
Q ss_pred CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe----------CCCeEEEEeCC
Q 025649 44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK----------GDGVVDVINIE 113 (250)
Q Consensus 44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~~~d~~ 113 (250)
+.+.+.|.++++.+..+..+ ..-.+.++| +++.++++. ..-.|.+||..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g---------------~~~~~~~sp------dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG---------------FLGNVALSP------DGKTIYVAETFYSRGTRGERTDVVEIWDTQ 75 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE---------------SSEEEEE-T------TSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred ceEEEEECCCCcEEEEeecc---------------cCCceeECC------CCCEEEEEEEEEeccccccceeEEEEEecC
Confidence 57999999999888888744 344566787 899888763 24479999999
Q ss_pred CceeEeeccCCCC------CCccceeecccceeEEE--------eeeeeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649 114 SELNISRSKSTTK------PLKGSQSTSKVNIRDAE--------MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 179 (250)
Q Consensus 114 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 179 (250)
+-....++..+.+ .....++++.||++++. +...|.... +.+.++.. .. |.-.-|..+
T Consensus 76 TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~---kvv~ei~~--PG--C~~iyP~~~- 147 (342)
T PF06433_consen 76 TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK---KVVGEIDT--PG--CWLIYPSGN- 147 (342)
T ss_dssp TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT---EEEEEEEG--TS--EEEEEEEET-
T ss_pred cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCC---ceeeeecC--CC--EEEEEecCC-
Confidence 9877766555543 23455788999999873 222232222 22223321 11 222223212
Q ss_pred CcEEEEeeCCCeEEEEecCCC
Q 025649 180 GKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 180 ~~~l~s~~~d~~i~iwd~~~~ 200 (250)
+-+.+-|.||.+.-..+...
T Consensus 148 -~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 148 -RGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp -TEEEEEETTSCEEEEEETST
T ss_pred -CceEEEecCCceEEEEECCC
Confidence 45778888999999988853
No 374
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.012 Score=50.55 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=52.2
Q ss_pred EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc
Q 025649 36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 115 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 115 (250)
.++.|+..|.+...|....-........ ...+|++++|+. +|+.++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~------------v~~~Vtsvafn~------dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNER------------VQGPVTSVAFNQ------DGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCc------------cCCcceeeEecC------CCceeccccCCCcEEEEEccCC
Confidence 5888898999999888653111011101 246899999998 9999999999999999999987
Q ss_pred eeEeeccC
Q 025649 116 LNISRSKS 123 (250)
Q Consensus 116 ~~~~~~~~ 123 (250)
+....+..
T Consensus 163 k~l~~i~e 170 (1206)
T KOG2079|consen 163 KILKVITE 170 (1206)
T ss_pred cceeeeee
Confidence 76655443
No 375
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.66 E-value=0.016 Score=40.85 Aligned_cols=105 Identities=15% Similarity=0.319 Sum_probs=64.1
Q ss_pred EEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC
Q 025649 36 EVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 114 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 114 (250)
.++.|+.+|.|.+|+..- +.....+..+ ...|.++...- .++.+..+++.||.|+.|++.-
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-------------~e~i~~~Ip~~-----~~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSG-------------EESIDLGIPNG-----RDSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcc-------------cccceeccccc-----cccceeEEeccCCceeeecccc
Confidence 688999999999999862 2222222211 12233322221 2567889999999999999875
Q ss_pred ceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCcc-ccEEEEEeecCCCCCcEEEEe--eCCCe
Q 025649 115 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCVAFSMFGERGKYLISG--GNDKL 191 (250)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~l~s~--~~d~~ 191 (250)
.+.+... ..|. .++.....+ ..+++++.+ |.|..
T Consensus 134 ~k~~g~~----------------------------------------g~h~~~~~e~~ivv---~sd~~i~~a~~S~d~~ 170 (238)
T KOG2444|consen 134 NKVLGYV----------------------------------------GQHNFESGEELIVV---GSDEFLKIADTSHDRV 170 (238)
T ss_pred Cceeeee----------------------------------------ccccCCCcceeEEe---cCCceEEeeccccchh
Confidence 4432211 1222 233344444 456777777 88888
Q ss_pred EEEEecCCCc
Q 025649 192 VKVWDCSRFQ 201 (250)
Q Consensus 192 i~iwd~~~~~ 201 (250)
++.|++..-.
T Consensus 171 ~k~W~ve~~~ 180 (238)
T KOG2444|consen 171 LKKWNVEKIK 180 (238)
T ss_pred hhhcchhhhh
Confidence 9999887643
No 376
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.50 E-value=0.33 Score=40.41 Aligned_cols=141 Identities=16% Similarity=0.135 Sum_probs=74.2
Q ss_pred EEEEecCCC------eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC-----
Q 025649 36 EVISGGLDS------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD----- 104 (250)
Q Consensus 36 ~l~s~s~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d----- 104 (250)
+++.|+.++ .+..+|..+++........ .+..-.++++. ++.+.++|+.|
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~------------~~r~~~~~~~~-------~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP------------SPRCRVGVAVL-------NGKLYVVGGYDSGSDR 347 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCC------------cccccccEEEE-------CCEEEEEccccCCCcc
Confidence 777787773 6788888776433222211 22333445554 57888999888
Q ss_pred -CeEEEEeCCCceeEeeccCCCCCCccceeecc-cceeEEEeeeeeeccC-eeee----------eeccccCccccEEEE
Q 025649 105 -GVVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEILDQSGG-KRLH----------LDYSVGGHTAAASCV 171 (250)
Q Consensus 105 -~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~h~~~v~~~ 171 (250)
..+..||.+.++..... +-...-....... +|...+ +|..++... ...+ .+..+....... ++
T Consensus 348 l~~ve~YD~~~~~W~~~a--~M~~~R~~~~v~~l~g~iYa-vGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~-gv 423 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTPVA--PMNTKRSDFGVAVLDGKLYA-VGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGH-GV 423 (571)
T ss_pred cceEEEecCCCCceeccC--CccCccccceeEEECCEEEE-EeccccccccccEEEecCCCCcccccCCCCcceeee-EE
Confidence 36778888887643311 1112222233333 444444 777665432 1111 111111111111 22
Q ss_pred EeecCCCCCcEEEEeeCCC------eEEEEecCCCcce
Q 025649 172 AFSMFGERGKYLISGGNDK------LVKVWDCSRFQGV 203 (250)
Q Consensus 172 ~~~p~~~~~~~l~s~~~d~------~i~iwd~~~~~~~ 203 (250)
+- -+|.+.+.|+.++ ++..||..+....
T Consensus 424 ~~----~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 424 AV----LGGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred EE----ECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 22 3678888888554 5778888876543
No 377
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.17 Score=35.51 Aligned_cols=91 Identities=5% Similarity=-0.058 Sum_probs=57.1
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|++||+.+++.+..-+ -....+..=-...-+...-.-.-.+|.-..+|.++.+++..+.++ ..-+
T Consensus 70 ir~~~L~~gq~~~s~~-l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~--------------GeGW 134 (262)
T COG3823 70 IRVSDLTTGQEIFSEK-LAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE--------------GEGW 134 (262)
T ss_pred eEEEeccCceEEEEee-cCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC--------------Ccce
Confidence 7889999888876655 222233322222333323344566888899999998888888755 3345
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 115 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 115 (250)
.++. +++.|..+....+++.-|.++.
T Consensus 135 gLt~--------d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 135 GLTS--------DDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred eeec--------CCcceEeeCCceEEEecCHHHh
Confidence 5543 4555666666778888787753
No 378
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.43 E-value=0.24 Score=36.55 Aligned_cols=143 Identities=15% Similarity=0.035 Sum_probs=79.9
Q ss_pred CeeeEEEcCCCCeEEEEec-CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 23 ICSSVQFIPWKPWEVISGG-LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
.+.+.+++++++ .++... .++.-.||-...+........+ ..+....|.+ ++...++.
T Consensus 25 ~~~s~AvS~dg~-~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--------------~~l~~PS~d~------~g~~W~v~ 83 (253)
T PF10647_consen 25 DVTSPAVSPDGS-RVAAVSEGDGGRSLYVGPAGGPVRPVLTG--------------GSLTRPSWDP------DGWVWTVD 83 (253)
T ss_pred cccceEECCCCC-eEEEEEEcCCCCEEEEEcCCCcceeeccC--------------CccccccccC------CCCEEEEE
Confidence 688999999998 454433 2333333433333333332212 3566677777 77777777
Q ss_pred eCCCeEEEEe-CCCcee-EeeccCCCCC-CccceeecccceeEEEeee----eeec--------cC---eeeeeeccccC
Q 025649 102 KGDGVVDVIN-IESELN-ISRSKSTTKP-LKGSQSTSKVNIRDAEMEI----LDQS--------GG---KRLHLDYSVGG 163 (250)
Q Consensus 102 ~~d~~i~~~d-~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~--------~~---~~~~~~~~~~~ 163 (250)
..+...+++. ...+.. .......... .|..+.+||||..++.+.. .... .. .....+.....
T Consensus 84 ~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~ 163 (253)
T PF10647_consen 84 DGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP 163 (253)
T ss_pred cCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc
Confidence 7777777774 333322 2222222222 8999999999999885331 1111 01 00011122223
Q ss_pred ccccEEEEEeecCCCCCcEEEEeeCC
Q 025649 164 HTAAASCVAFSMFGERGKYLISGGND 189 (250)
Q Consensus 164 h~~~v~~~~~~p~~~~~~~l~s~~~d 189 (250)
....+..+.|. +++.+++.+...
T Consensus 164 ~~~~v~~v~W~---~~~~L~V~~~~~ 186 (253)
T PF10647_consen 164 LLSDVTDVAWS---DDSTLVVLGRSA 186 (253)
T ss_pred ccCcceeeeec---CCCEEEEEeCCC
Confidence 34678999999 777777666543
No 379
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.32 E-value=0.41 Score=38.14 Aligned_cols=96 Identities=8% Similarity=0.113 Sum_probs=55.8
Q ss_pred CcEEEEcccceeeeee-ccCCCCCeeeEEEcCCCCeEEEEecCC----------CeEEEEEccCCCCccceecCCCCCCC
Q 025649 1 MWQIIDIRQHCLYKSL-RAGHSSICSSVQFIPWKPWEVISGGLD----------SKLVMWDFSKGRPNKIVNFGLPENNG 69 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l-~~~h~~~v~~l~~~~~~~~~l~s~s~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~ 69 (250)
+|++.|+++|+.+... . . .....+.|.++++.++.+...+ ..|..|++.++..-..+-++.+
T Consensus 151 ~l~v~Dl~tg~~l~d~i~-~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~---- 223 (414)
T PF02897_consen 151 TLRVFDLETGKFLPDGIE-N--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP---- 223 (414)
T ss_dssp EEEEEETTTTEEEEEEEE-E--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T----
T ss_pred EEEEEECCCCcCcCCccc-c--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec----
Confidence 4789999999876532 3 1 1223499999998555554332 2477788766544322222210
Q ss_pred CCCcccCCCc-eeEEecCCCcccCCCCCEEEEEeC---C-CeEEEEeCCCc
Q 025649 70 NAGQCYNPAF-VHAIAIPDADMLDKTNKICVVAKG---D-GVVDVINIESE 115 (250)
Q Consensus 70 ~~~~~~~~~~-v~~~~~~~~~~~~~~~~~l~~~~~---d-~~i~~~d~~~~ 115 (250)
.... ...+..++ ++++|+..+. + ..+.+.|+..+
T Consensus 224 ------~~~~~~~~~~~s~------d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 224 ------DEPFWFVSVSRSK------DGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp ------TCTTSEEEEEE-T------TSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred ------CCCcEEEEEEecC------cccEEEEEEEccccCCeEEEEecccc
Confidence 1222 45677787 8888765532 3 46788888864
No 380
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.29 E-value=0.09 Score=41.20 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=54.1
Q ss_pred CcEEEEcccceeeeeeccCCCC-CeeeEEEc--CCCCeEEEEecCCCeEEEEEc-cCCC--CccceecCCCCCCCC----
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSS-ICSSVQFI--PWKPWEVISGGLDSKLVMWDF-SKGR--PNKIVNFGLPENNGN---- 70 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~-~v~~l~~~--~~~~~~l~s~s~dg~v~iwd~-~~~~--~~~~~~~~~~~~~~~---- 70 (250)
++.+||+.+.+.++++..+-.+ ....|.|. |+...-++.+....+|..|-- +.++ ..+.+..+......-
T Consensus 223 ~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ 302 (461)
T PF05694_consen 223 SLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPE 302 (461)
T ss_dssp EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---G
T ss_pred eEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccc
Confidence 4789999999999999844333 45677775 444434555555555555543 3333 112222221000000
Q ss_pred --CCcccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCc
Q 025649 71 --AGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESE 115 (250)
Q Consensus 71 --~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~ 115 (250)
.....-+.-|+.+.+|. |.++|..++ .+|.|+-||+...
T Consensus 303 ml~~~~~~P~LitDI~iSl------DDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 303 MLKPFGAVPPLITDILISL------DDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp GGGGG-EE------EEE-T------TS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccCCCceEeEEEcc------CCCEEEEEcccCCcEEEEecCCC
Confidence 00011245678888887 888887665 6899999999873
No 381
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.26 E-value=0.027 Score=28.34 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=26.5
Q ss_pred CCeeeEEEcCCCC--eEEEEecCCCeEEEEEccC
Q 025649 22 SICSSVQFIPWKP--WEVISGGLDSKLVMWDFSK 53 (250)
Q Consensus 22 ~~v~~l~~~~~~~--~~l~s~s~dg~v~iwd~~~ 53 (250)
+.|.+++|+|... .+|+-+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999997543 4888888889999999985
No 382
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.19 E-value=0.55 Score=38.39 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=60.4
Q ss_pred cEEEEcccceeeeeeccCCCC------Cee--eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSS------ICS--SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~------~v~--~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 73 (250)
|.-.|.++|+.+.+++ .... .+. .+... ++. .++.++.+|.|.-+|.++|+.+..+......
T Consensus 73 l~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~g~~~~-~~~-~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~------- 142 (488)
T cd00216 73 LFALDAATGKVLWRYD-PKLPADRGCCDVVNRGVAYW-DPR-KVFFGTFDGRLVALDAETGKQVWKFGNNDQV------- 142 (488)
T ss_pred EEEEECCCChhhceeC-CCCCccccccccccCCcEEc-cCC-eEEEecCCCeEEEEECCCCCEeeeecCCCCc-------
Confidence 4556777888777765 2221 010 11111 213 6778888999999999999998887744110
Q ss_pred ccCCCceeEEecCCCcccCCCCCEEEEEe---------CCCeEEEEeCCCceeEeeccC
Q 025649 74 CYNPAFVHAIAIPDADMLDKTNKICVVAK---------GDGVVDVINIESELNISRSKS 123 (250)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~---------~d~~i~~~d~~~~~~~~~~~~ 123 (250)
..-..+.-+|.. .+..++.++ .++.+..+|..+++.......
T Consensus 143 ----~~~~~i~ssP~v----~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 143 ----PPGYTMTGAPTI----VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred ----CcceEecCCCEE----ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 000112222211 224444443 368899999999987766544
No 383
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.66 Score=38.98 Aligned_cols=53 Identities=11% Similarity=0.059 Sum_probs=39.7
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI 59 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 59 (250)
|+|++. +|+++.++. -....+-.+.|+.+.. |+....+|++.+|++- |+.+..
T Consensus 66 I~If~~-sG~lL~~~~-w~~~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~-ge~ie~ 118 (829)
T KOG2280|consen 66 IRIFNI-SGQLLGRIL-WKHGELIGMGWSDDEE--LICVQKDGTVHVYGLL-GEFIES 118 (829)
T ss_pred EEEEec-cccchHHHH-hcCCCeeeecccCCce--EEEEeccceEEEeecc-hhhhcc
Confidence 677776 678777766 4444778999999875 7778899999999985 444433
No 384
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.4 Score=36.38 Aligned_cols=100 Identities=10% Similarity=-0.056 Sum_probs=56.5
Q ss_pred CCccceeecccceeEEEeeeeeecc------------CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC-eEE
Q 025649 127 PLKGSQSTSKVNIRDAEMEILDQSG------------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK-LVK 193 (250)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~-~i~ 193 (250)
...+.++||||++.+..+-+..... ... .....+....+..-.++.. .+|.+.+++-.+| .|.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~-~~~~~~~~~~G~PDG~~vD---adG~lw~~a~~~g~~v~ 238 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR-RGFVDFDEEPGLPDGMAVD---ADGNLWVAAVWGGGRVV 238 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc-ceEEEccCCCCCCCceEEe---CCCCEEEecccCCceEE
Confidence 5667899999998776432211110 111 1111222233444556666 7788876555554 899
Q ss_pred EEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE-EEeeC
Q 025649 194 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL-VVCDT 240 (250)
Q Consensus 194 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~ 240 (250)
+|+.. + +++....-....+.+++|--++.+.| +|+..
T Consensus 239 ~~~pd-G---------~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 239 RFNPD-G---------KLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EECCC-C---------cEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 99988 5 45555555556777787765444444 44433
No 385
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.13 E-value=0.52 Score=37.55 Aligned_cols=100 Identities=13% Similarity=-0.073 Sum_probs=59.8
Q ss_pred CeeeEEEcCCCCeEEEEecCC----CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 23 ICSSVQFIPWKPWEVISGGLD----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
.+....++|+++.++++-+.. .+|++.|+.+++.+...- . ......+.|.+ +++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~-------------~~~~~~~~W~~------d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-E-------------NPKFSSVSWSD------DGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-E-------------EEESEEEEECT------TSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-c-------------ccccceEEEeC------CCCEE
Confidence 344678999999444443333 459999999996554321 1 11122388887 77766
Q ss_pred EEEeC-----------CCeEEEEeCCCceeE--eeccCCCCCC-ccceeecccceeEE
Q 025649 99 VVAKG-----------DGVVDVINIESELNI--SRSKSTTKPL-KGSQSTSKVNIRDA 142 (250)
Q Consensus 99 ~~~~~-----------d~~i~~~d~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~ 142 (250)
+.... ...|..|.+.+.... ..+....... ...+..++|+++++
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~ 242 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLF 242 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEE
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEE
Confidence 55542 334788888775433 2333333233 56788899999987
No 386
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.95 E-value=0.99 Score=39.22 Aligned_cols=174 Identities=9% Similarity=0.053 Sum_probs=97.0
Q ss_pred cEEEEcccceeeeeeccCCCC---CeeeEEEcCCCCeEEEEecC----------CCeEEEEEccCCCCccceecCCCCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSS---ICSSVQFIPWKPWEVISGGL----------DSKLVMWDFSKGRPNKIVNFGLPENN 68 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~---~v~~l~~~~~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~~~~~~ 68 (250)
++++|-+|.+.+...+..... .|.++.|..|...+++.|.. .|.|.++....+..+......
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~----- 826 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET----- 826 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee-----
Confidence 577887777766554422222 34455588774337777642 477777777663333332211
Q ss_pred CCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee
Q 025649 69 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 148 (250)
Q Consensus 69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (250)
.-.+.+.++..- +|+++|.- +..|++|++.+++.+
T Consensus 827 ------~v~Gav~aL~~f-------ngkllA~I--n~~vrLye~t~~~eL------------------------------ 861 (1096)
T KOG1897|consen 827 ------VVKGAVYALVEF-------NGKLLAGI--NQSVRLYEWTTEREL------------------------------ 861 (1096)
T ss_pred ------eeccceeehhhh-------CCeEEEec--CcEEEEEEcccccee------------------------------
Confidence 012334444333 67776654 468999999875422
Q ss_pred eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceee-eeeccCCceeEEEe
Q 025649 149 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI-KNINLNKKVNWLCT 227 (250)
Q Consensus 149 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~ 227 (250)
+.-..|..++..+... -.|+.++.|..-+.+.+-..+..+. .+.. ...-+.....++.+
T Consensus 862 ----------r~e~~~~~~~~aL~l~---v~gdeI~VgDlm~Sitll~y~~~eg-------~f~evArD~~p~Wmtavei 921 (1096)
T KOG1897|consen 862 ----------RIECNISNPIIALDLQ---VKGDEIAVGDLMRSITLLQYKGDEG-------NFEEVARDYNPNWMTAVEI 921 (1096)
T ss_pred ----------hhhhcccCCeEEEEEE---ecCcEEEEeeccceEEEEEEeccCC-------ceEEeehhhCccceeeEEE
Confidence 2223455667777777 6788888887777766655544321 1211 12234555666666
Q ss_pred cCCCCCeEEEeeCCceEEEE
Q 025649 228 TPTESENLVVCDTSKVVKVY 247 (250)
Q Consensus 228 ~~~~~~~l~s~~~d~~i~vw 247 (250)
- +++.++-+..+|.+.+-
T Consensus 922 l--~~d~ylgae~~gNlf~v 939 (1096)
T KOG1897|consen 922 L--DDDTYLGAENSGNLFTV 939 (1096)
T ss_pred e--cCceEEeecccccEEEE
Confidence 5 34455556666666543
No 387
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.92 E-value=0.59 Score=36.38 Aligned_cols=55 Identities=9% Similarity=-0.044 Sum_probs=28.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK 58 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~ 58 (250)
+.+.|+++++..+--. +-........++|+++ .++-......|+--|+++.+...
T Consensus 62 ly~lDL~t~~i~QLTd-g~g~~~~g~~~s~~~~-~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 62 LYLLDLATGEITQLTD-GPGDNTFGGFLSPDDR-ALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp EEEEETTT-EEEE----SS-B-TTT-EE-TTSS-EEEEEETTTEEEEEETTT--EEE
T ss_pred eEEEEcccCEEEECcc-CCCCCccceEEecCCC-eEEEEECCCeEEEEECCcCcEEE
Confidence 4567888887764444 3334444677788887 55444445678888888766433
No 388
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.90 E-value=0.24 Score=35.42 Aligned_cols=100 Identities=13% Similarity=0.102 Sum_probs=62.7
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEE--ccCCCCcc---ceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWD--FSKGRPNK---IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 96 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (250)
+--+.++|+.+.+.+.++-+.+-+|.-|| ..+|.... .+........ .+..--.+++.. +|+
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~-------e~~~PDGm~ID~------eG~ 224 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPF-------ESLEPDGMTIDT------EGN 224 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCc-------CCCCCCcceEcc------CCc
Confidence 34457889888775667788889998888 55554321 1211100000 011112333333 788
Q ss_pred EEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeec
Q 025649 97 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 135 (250)
Q Consensus 97 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 135 (250)
+.++.-..++|...|..+|+.+.++..+. ..+++.+|-
T Consensus 225 L~Va~~ng~~V~~~dp~tGK~L~eiklPt-~qitsccFg 262 (310)
T KOG4499|consen 225 LYVATFNGGTVQKVDPTTGKILLEIKLPT-PQITSCCFG 262 (310)
T ss_pred EEEEEecCcEEEEECCCCCcEEEEEEcCC-CceEEEEec
Confidence 88888889999999999999888777763 555555554
No 389
>PHA03098 kelch-like protein; Provisional
Probab=95.89 E-value=0.83 Score=37.85 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=14.4
Q ss_pred CCCeEEEEecCC-----CeEEEEEccCCC
Q 025649 32 WKPWEVISGGLD-----SKLVMWDFSKGR 55 (250)
Q Consensus 32 ~~~~~l~s~s~d-----g~v~iwd~~~~~ 55 (250)
++. +++.|+.+ ..+..||..+++
T Consensus 342 ~~~-lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 342 NNR-IYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCE-EEEEeCCCCCEecceEEEEcCCCCc
Confidence 455 67777765 346677776554
No 390
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.87 E-value=0.61 Score=38.98 Aligned_cols=152 Identities=12% Similarity=-0.102 Sum_probs=80.4
Q ss_pred CceeEEecCCCcccCCCCCEEEEEe------CCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAK------GDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD- 148 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~------~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 148 (250)
..+.+.+++| +++.++... .|. .|.+++..... ..+... .....-.|+|+|..+.+....+
T Consensus 350 ~~vsspaiSp------dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g--~~~t~PsWspDG~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSR------SGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEG--HSLTRPSWSLDADAVWVVVDGNT 419 (591)
T ss_pred cCcccceECC------CCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecC--CCCCCceECCCCCceEEEecCcc
Confidence 3567888888 888876665 243 45555543222 222111 2478889999988776532110
Q ss_pred ---eccC-eeeee-ecccc------CccccEEEEEeecCCCCCcEEEEeeCCCeEEE---EecCCCcceecccccceeee
Q 025649 149 ---QSGG-KRLHL-DYSVG------GHTAAASCVAFSMFGERGKYLISGGNDKLVKV---WDCSRFQGVQTSINNDLLIK 214 (250)
Q Consensus 149 ---~~~~-~~~~~-~~~~~------~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~i---wd~~~~~~~~~~~~~~~~~~ 214 (250)
.... ...+. +.... ...+.|..+.|| |+|..++.-. ++.|.+ -....+. . .. ..+...
T Consensus 420 ~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wS---pDG~RiA~i~-~g~v~Va~Vvr~~~G~-~-~l--~~~~~l 491 (591)
T PRK13616 420 VVRVIRDPATGQLARTPVDASAVASRVPGPISELQLS---RDGVRAAMII-GGKVYLAVVEQTEDGQ-Y-AL--TNPREV 491 (591)
T ss_pred eEEEeccCCCceEEEEeccCchhhhccCCCcCeEEEC---CCCCEEEEEE-CCEEEEEEEEeCCCCc-e-ee--cccEEe
Confidence 0000 00000 00111 224579999999 8999888765 577777 3433332 1 00 011112
Q ss_pred eeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 215 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 215 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
..+....+.++.|.+ ++. |+++..++...+|.+
T Consensus 492 ~~~l~~~~~~l~W~~-~~~-L~V~~~~~~~~v~~v 524 (591)
T PRK13616 492 GPGLGDTAVSLDWRT-GDS-LVVGRSDPEHPVWYV 524 (591)
T ss_pred ecccCCccccceEec-CCE-EEEEecCCCCceEEE
Confidence 223344467888986 665 455555554555543
No 391
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.79 E-value=0.55 Score=35.01 Aligned_cols=61 Identities=21% Similarity=0.450 Sum_probs=41.6
Q ss_pred CCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEE
Q 025649 32 WKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI 110 (250)
Q Consensus 32 ~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~ 110 (250)
.++ .|+.|..+| |.+++.... ....... ...|..+...| +-+.+++-+ |+.+.++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~~---------------~~~I~ql~vl~------~~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRILK---------------LSSITQLSVLP------ELNLLLVLS-DGQLYVY 61 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccceeEee---------------cceEEEEEEec------ccCEEEEEc-CCccEEE
Confidence 455 688888888 889998333 2222222 33488888887 666666654 4999999
Q ss_pred eCCCce
Q 025649 111 NIESEL 116 (250)
Q Consensus 111 d~~~~~ 116 (250)
++..-.
T Consensus 62 ~L~~l~ 67 (275)
T PF00780_consen 62 DLDSLE 67 (275)
T ss_pred Echhhc
Confidence 998643
No 392
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.77 E-value=0.055 Score=27.25 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=25.4
Q ss_pred ceeEEEecCCCC--CeEEEeeCCceEEEEeCC
Q 025649 221 KVNWLCTTPTES--ENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 221 ~v~~~~~~~~~~--~~l~s~~~d~~i~vw~~~ 250 (250)
.+.++.|+|..+ ++|+.+-.-|.|.|+|++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 577899998666 788989999999999975
No 393
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.72 E-value=0.55 Score=34.52 Aligned_cols=95 Identities=6% Similarity=0.012 Sum_probs=60.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|+.+|+++++......-...--=..++...+ + +..-.-.++...+||..+.+.+.++... ..-+
T Consensus 70 l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~-l~qLTWk~~~~f~yd~~tl~~~~~~~y~--------------~EGW 133 (264)
T PF05096_consen 70 LRKVDLETGKVLQSVPLPPRYFGEGITILGD-K-LYQLTWKEGTGFVYDPNTLKKIGTFPYP--------------GEGW 133 (264)
T ss_dssp EEEEETTTSSEEEEEE-TTT--EEEEEEETT-E-EEEEESSSSEEEEEETTTTEEEEEEE-S--------------SS--
T ss_pred EEEEECCCCcEEEEEECCccccceeEEEECC-E-EEEEEecCCeEEEEccccceEEEEEecC--------------Ccce
Confidence 6788999988776554122223335555543 2 5555677899999999998888888744 3445
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEee
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 120 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 120 (250)
.++. +++.|+.+.....|+++|..+.+....
T Consensus 134 GLt~--------dg~~Li~SDGS~~L~~~dP~~f~~~~~ 164 (264)
T PF05096_consen 134 GLTS--------DGKRLIMSDGSSRLYFLDPETFKEVRT 164 (264)
T ss_dssp EEEE--------CSSCEEEE-SSSEEEEE-TTT-SEEEE
T ss_pred EEEc--------CCCEEEEECCccceEEECCcccceEEE
Confidence 6652 677788877888999999987655443
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.63 E-value=1.1 Score=37.47 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=64.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEe
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 173 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 173 (250)
-++..++-+....+.|||.+.+..... ..+ ...+.|..+.|
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~--------------------------------------~~f-~~~~~I~dLDW 80 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYE--------------------------------------ESF-SEDDPIRDLDW 80 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEe--------------------------------------eee-cCCCceeecee
Confidence 355555555667899999987552221 233 34567888888
Q ss_pred ecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceee--eeeccC-CceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 174 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI--KNINLN-KKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
.. .|+|+.+++.+-.+.|.++-.....-....+.-..+. ....|+ .+|.+.+|.+ +|. +++|+ ++.+.|++
T Consensus 81 ts-t~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~-LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 81 TS-TPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGT-LVVGS-GNQLFVFD 154 (631)
T ss_pred ee-cCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCe-EEEEe-CCEEEEEC
Confidence 63 3788888888888888888543211000000001111 223444 5788899986 775 55554 44577765
No 395
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.57 E-value=0.61 Score=34.05 Aligned_cols=89 Identities=15% Similarity=-0.044 Sum_probs=61.2
Q ss_pred CCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeC
Q 025649 33 KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 112 (250)
Q Consensus 33 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~ 112 (250)
|+ +++.|...|.+.+-+.++|.....+..- +.|.+-+.. ++++..+..|+.|++.+..|.
T Consensus 63 gd-fVV~GCy~g~lYfl~~~tGs~~w~f~~~--------------~~vk~~a~~-----d~~~glIycgshd~~~yalD~ 122 (354)
T KOG4649|consen 63 GD-FVVLGCYSGGLYFLCVKTGSQIWNFVIL--------------ETVKVRAQC-----DFDGGLIYCGSHDGNFYALDP 122 (354)
T ss_pred CC-EEEEEEccCcEEEEEecchhheeeeeeh--------------hhhccceEE-----cCCCceEEEecCCCcEEEecc
Confidence 44 6888999999999999999888777633 333332222 248999999999999999999
Q ss_pred CCceeEeeccCCCCCCccceeecc-cceeEE
Q 025649 113 ESELNISRSKSTTKPLKGSQSTSK-VNIRDA 142 (250)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 142 (250)
++.......+-.. ..-.+-.+.| ++.+++
T Consensus 123 ~~~~cVykskcgG-~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 123 KTYGCVYKSKCGG-GTFVSPVIAPGDGSLYA 152 (354)
T ss_pred cccceEEecccCC-ceeccceecCCCceEEE
Confidence 9987776654432 2223334444 444443
No 396
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.52 E-value=0.15 Score=36.60 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=45.7
Q ss_pred CCCcEEEEeeCCCeEEEEecCCCcceecc-cccceeeeee----ccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 178 ERGKYLISGGNDKLVKVWDCSRFQGVQTS-INNDLLIKNI----NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 178 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.+++++++-..+|.+++||+.+++..... +-.+++.... .....|..+.... +|.-+++-+ +|..+.|+.
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEecc
Confidence 45788999999999999999998655321 1111111100 3455677777774 776666654 577888874
No 397
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.36 E-value=0.64 Score=32.93 Aligned_cols=50 Identities=18% Similarity=-0.021 Sum_probs=35.7
Q ss_pred CEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee
Q 025649 96 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 145 (250)
Q Consensus 96 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (250)
..|+.+...+.|.+|++...........+.-..+..+.++..|+++++.-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEE
Confidence 45544466688999999954444444444447888999999999999643
No 398
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.35 E-value=0.81 Score=34.09 Aligned_cols=113 Identities=12% Similarity=0.025 Sum_probs=57.5
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec-CCCCCCCCCCcccCCCceeEEe-cCCCcccCCCCCEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF-GLPENNGNAGQCYNPAFVHAIA-IPDADMLDKTNKIC 98 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~l 98 (250)
...|..+...|+-. .|+.-+ |+.+.++++........... ..+..............+...+ -.. ......|
T Consensus 35 ~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~----~~~~~~L 108 (275)
T PF00780_consen 35 LSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGG----HEGSRRL 108 (275)
T ss_pred cceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccc----cccceEE
Confidence 34499999999877 455544 49999999976544331110 0000000000000123344444 111 0133444
Q ss_pred EEEeCCCeEEEEeCCCc-----eeEeeccCCCCCCccceeecccceeEE
Q 025649 99 VVAKGDGVVDVINIESE-----LNISRSKSTTKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (250)
+++ ..+.|.+|..... +...++..+ ..+..+.|.++.-.++
T Consensus 109 ~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~~~~i~v~ 154 (275)
T PF00780_consen 109 CVA-VKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFLGNKICVG 154 (275)
T ss_pred EEE-ECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEeCCEEEEE
Confidence 444 4568999888763 233444444 6777888885444443
No 399
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.29 E-value=1 Score=37.68 Aligned_cols=108 Identities=14% Similarity=-0.002 Sum_probs=70.0
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 100 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 100 (250)
.....-+.-+.-++ .-+.-+...++.|||.+.+.....-.+. ..+.|..+.|.. .++++.+++
T Consensus 29 i~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~------------~~~~I~dLDWts----t~d~qsiLa 91 (631)
T PF12234_consen 29 ISNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFS------------EDDPIRDLDWTS----TPDGQSILA 91 (631)
T ss_pred CCCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeec------------CCCceeeceeee----cCCCCEEEE
Confidence 34556666666665 3444444568999999887644333332 357889999975 358888888
Q ss_pred EeCCCeEEEEeCC-----Cc----eeE--eeccCCCCCCccceeecccceeEEEee
Q 025649 101 AKGDGVVDVINIE-----SE----LNI--SRSKSTTKPLKGSQSTSKVNIRDAEME 145 (250)
Q Consensus 101 ~~~d~~i~~~d~~-----~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (250)
.+..+.|.+|--. +. ..+ ..+.......|....|.++|..++..|
T Consensus 92 VGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 92 VGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG 147 (631)
T ss_pred EEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC
Confidence 8888889888542 11 111 123334446788999999998887533
No 400
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.10 E-value=1.3 Score=35.14 Aligned_cols=159 Identities=11% Similarity=0.078 Sum_probs=67.2
Q ss_pred EEEcccceeeeeeccC--CCCCeeeEEEcCCCCeEEEEec--------------------CCCeEEEEEccCCCCcccee
Q 025649 4 IIDIRQHCLYKSLRAG--HSSICSSVQFIPWKPWEVISGG--------------------LDSKLVMWDFSKGRPNKIVN 61 (250)
Q Consensus 4 iwd~~~~~~~~~l~~~--h~~~v~~l~~~~~~~~~l~s~s--------------------~dg~v~iwd~~~~~~~~~~~ 61 (250)
+.|-++.+........ ...--..+-|.|..+ .++|.+ ...++.+||+.+.+.++++.
T Consensus 161 llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id 239 (461)
T PF05694_consen 161 LLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID 239 (461)
T ss_dssp EE-TTT--EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred EEcCccccccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence 4455555555544411 122334666777666 676653 24689999999999999998
Q ss_pred cCCCCCCCCCCcccCCC-ceeEEecCCCcccCCCCCEEEEEe-CCCeEE-EEeCCCceeEeeccCCCCCCccceeecccc
Q 025649 62 FGLPENNGNAGQCYNPA-FVHAIAIPDADMLDKTNKICVVAK-GDGVVD-VINIESELNISRSKSTTKPLKGSQSTSKVN 138 (250)
Q Consensus 62 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (250)
++. .. ....+.|.- +++..+-++++ -.++|- +|..+.+....+...
T Consensus 240 Lg~------------~g~~pLEvRflH----~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi--------------- 288 (461)
T PF05694_consen 240 LGE------------EGQMPLEVRFLH----DPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVI--------------- 288 (461)
T ss_dssp S-T------------TEEEEEEEEE-S----STT--EEEEEEE--EEEEEEEE-ETTEEEEEEEE---------------
T ss_pred cCC------------CCCceEEEEecC----CCCccceEEEEeccceEEEEEEcCCCCeeeeEEE---------------
Confidence 771 11 234455532 23455444443 333343 333333332111000
Q ss_pred eeEEEeee--eeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCcce
Q 025649 139 IRDAEMEI--LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGV 203 (250)
Q Consensus 139 ~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~ 203 (250)
.+.. .+.+.. ...++.+..-..-|+.+..| .|.++|...+ .+|.|+.||+......
T Consensus 289 ----~ip~~~v~~~~l--p~ml~~~~~~P~LitDI~iS---lDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 289 ----DIPAKKVEGWIL--PEMLKPFGAVPPLITDILIS---LDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp ----EE--EE--SS-----GGGGGG-EE------EEE----TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred ----ECCCcccCcccc--cccccccccCCCceEeEEEc---cCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 0000 000100 01122333334568889999 8888887665 5999999999886543
No 401
>PHA02713 hypothetical protein; Provisional
Probab=95.06 E-value=1.7 Score=36.23 Aligned_cols=23 Identities=4% Similarity=0.208 Sum_probs=17.8
Q ss_pred CCcEEEEeeCCC--eEEEEecCCCc
Q 025649 179 RGKYLISGGNDK--LVKVWDCSRFQ 201 (250)
Q Consensus 179 ~~~~l~s~~~d~--~i~iwd~~~~~ 201 (250)
+|++.+.|+.|+ .+..||..+.+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeeecceeehhhcCccccc
Confidence 578888898888 77778877754
No 402
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.05 E-value=1.4 Score=35.09 Aligned_cols=58 Identities=14% Similarity=0.259 Sum_probs=36.7
Q ss_pred cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 181 KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 181 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.++..-+.||.+.+|+-+... ........--.--+++.+ .-+.|++++.+..+.-|.+
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~----------f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFA----------FSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEEEEecCceEEEEeCCcEE----------EEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecH
Confidence 577788999999999988842 122222111122345665 4446888888888877753
No 403
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.02 E-value=0.74 Score=36.48 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=38.2
Q ss_pred eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcccee
Q 025649 14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN 61 (250)
Q Consensus 14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 61 (250)
..|. .....+.+|..+|++. +.++...=|.|.++|+.++..++.++
T Consensus 301 ~~l~-D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 301 FGLP-DSKREGESICLSPSGR-LAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred Eeec-cCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCCChhhhhhc
Confidence 3455 5566789999999988 77777777999999999999888887
No 404
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.91 E-value=0.9 Score=32.21 Aligned_cols=167 Identities=12% Similarity=0.072 Sum_probs=83.3
Q ss_pred EEEEecCCCeEEEEEccCC--CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC------eE
Q 025649 36 EVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG------VV 107 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~------~i 107 (250)
.|..+...+.|.+|++... +....|. .-+.|..+.++. .|++|++--.+. .+
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~--------------Tv~~V~~l~y~~------~GDYlvTlE~k~~~~~~~fv 89 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFS--------------TVGRVLQLVYSE------AGDYLVTLEEKNKRSPVDFV 89 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEc--------------chhheeEEEecc------ccceEEEEEeecCCccceEE
Confidence 3444355678999999843 3444444 347889999998 899999985332 45
Q ss_pred EEE-eCCCc---eeEe--eccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCc
Q 025649 108 DVI-NIESE---LNIS--RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 181 (250)
Q Consensus 108 ~~~-d~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 181 (250)
|+| +.+.. .... +...+ .+. +.........++ +-+++- ...+.+++..| -.|+
T Consensus 90 R~Y~NWr~~~~~~~~v~vRiaG~---~v~--------------~~~~~~~~~qle-iiElPl-~~~p~ciaCC~--~tG~ 148 (215)
T PF14761_consen 90 RAYFNWRSQKEENSPVRVRIAGH---RVT--------------PSFNESSKDQLE-IIELPL-SEPPLCIACCP--VTGN 148 (215)
T ss_pred EEEEEhhhhcccCCcEEEEEccc---ccc--------------cCCCCccccceE-EEEecC-CCCCCEEEecC--CCCC
Confidence 654 33321 1110 00000 000 000000011111 123333 45678888885 4576
Q ss_pred EEEEeeCCCeEEEEecCCCcce-ecccccceeeeeeccC-C-ceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 182 YLISGGNDKLVKVWDCSRFQGV-QTSINNDLLIKNINLN-K-KVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 182 ~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+++.. ++.+.+|.+...... ...+--........|. + .+..+++.. .++|..+ +-.+++..+
T Consensus 149 LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~---~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 149 LLVGC--GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICE---GYIAVMS-DLEVLVLKL 213 (215)
T ss_pred EEEEc--CCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEe---eEEEEec-CCEEEEEEE
Confidence 66543 578999988764321 0000001111111222 2 256666653 3677666 556777654
No 405
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.83 E-value=1.7 Score=35.09 Aligned_cols=59 Identities=7% Similarity=0.131 Sum_probs=41.3
Q ss_pred CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 180 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 180 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.-+++.+|..|-|++||--.. .....+.+....|..+.... +|+++++.+. ..+.+-|+
T Consensus 573 sGyIa~as~kGDirLyDRig~---------rAKtalP~lG~aIk~idvta-~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGK---------RAKTALPGLGDAIKHIDVTA-NGKHILATCK-NYLLLTDV 631 (776)
T ss_pred CceEEEecCCCceeeehhhcc---------hhhhcCcccccceeeeEeec-CCcEEEEeec-ceEEEEec
Confidence 458999999999999996553 22234556677888888876 7887766663 34555543
No 406
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.71 E-value=0.55 Score=38.75 Aligned_cols=49 Identities=4% Similarity=0.037 Sum_probs=35.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (250)
.+.+++.+..+|.++.+|.++|+.+..........-.-+.|.-+|+..+
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv 519 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYV 519 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEE
Confidence 4567778888999999999999998877665333334455556666655
No 407
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.60 E-value=0.17 Score=25.22 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=25.5
Q ss_pred CCCCeEEEEecCCCeEEEEEccCCCCccceecC
Q 025649 31 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG 63 (250)
Q Consensus 31 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 63 (250)
|+++.++++.-.+++|.++|..+++.+..+..+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 567756677777899999999888877777644
No 408
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.48 E-value=1.6 Score=33.21 Aligned_cols=192 Identities=10% Similarity=-0.006 Sum_probs=99.4
Q ss_pred eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC
Q 025649 26 SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 105 (250)
Q Consensus 26 ~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~ 105 (250)
+-.|.++...++.+--..+.|.-|+..+++. ..+. .+..+.++.... .+..|+++. .|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~--------------~p~~~~~~~~~d------~~g~Lv~~~-~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP--------------SPGGFSSGALID------AGGRLIACE-HG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE--------------CCCCcccceeec------CCCeEEEEc-cc
Confidence 3347777764666777778888888876643 2333 234444444432 344555543 23
Q ss_pred eEEEEeCCCcee-E--eecc-CCCCCCccceeecccceeEEEeeee---eecc-Cee---------eeeeccccCccccE
Q 025649 106 VVDVINIESELN-I--SRSK-STTKPLKGSQSTSKVNIRDAEMEIL---DQSG-GKR---------LHLDYSVGGHTAAA 168 (250)
Q Consensus 106 ~i~~~d~~~~~~-~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~---------~~~~~~~~~h~~~v 168 (250)
+.+++.+.+.. . .... .......+.....|+|.+.+..... +... ... ....+.+..+-..-
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP 165 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence 56666654443 1 1111 1222456678889999888853331 1111 111 11112222333445
Q ss_pred EEEEeecCCCCCcEEEEe-eCCCeEEEEecCC--CcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCc-eE
Q 025649 169 SCVAFSMFGERGKYLISG-GNDKLVKVWDCSR--FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK-VV 244 (250)
Q Consensus 169 ~~~~~~p~~~~~~~l~s~-~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i 244 (250)
+.++|| |+++.|..+ +..+.|.-|++.. +.... ...........+..-.++... +|.+.+++-.+| .|
T Consensus 166 NGla~S---pDg~tly~aDT~~~~i~r~~~d~~~g~~~~----~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v 237 (307)
T COG3386 166 NGLAFS---PDGKTLYVADTPANRIHRYDLDPATGPIGG----RRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRV 237 (307)
T ss_pred CceEEC---CCCCEEEEEeCCCCeEEEEecCcccCccCC----cceEEEccCCCCCCCceEEeC-CCCEEEecccCCceE
Confidence 789999 898766655 4458888888763 11100 011112222344555666654 666554444443 67
Q ss_pred EEEe
Q 025649 245 KVYS 248 (250)
Q Consensus 245 ~vw~ 248 (250)
.+|+
T Consensus 238 ~~~~ 241 (307)
T COG3386 238 VRFN 241 (307)
T ss_pred EEEC
Confidence 6665
No 409
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.44 E-value=1.5 Score=32.63 Aligned_cols=116 Identities=10% Similarity=0.004 Sum_probs=70.5
Q ss_pred cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCe-EEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649 9 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK-LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD 87 (250)
Q Consensus 9 ~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 87 (250)
.||++..+. -...-..|+|+|..+.-++.+-.-|+ ..++|....+...++.... ..-.--.-.|+|
T Consensus 57 aGk~v~~~~--lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~-----------~RHfyGHGvfs~ 123 (366)
T COG3490 57 AGKIVFATA--LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQE-----------GRHFYGHGVFSP 123 (366)
T ss_pred CCceeeeee--cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEeccc-----------CceeecccccCC
Confidence 344444433 23344567788877645555555554 4678887776665554220 001111235676
Q ss_pred CcccCCCCCEEEEEeCC-----CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE
Q 025649 88 ADMLDKTNKICVVAKGD-----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 143 (250)
Q Consensus 88 ~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (250)
+|.+|...-.| |.|-+||.+.+....-......-....+.+.+||+.++.
T Consensus 124 ------dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvv 178 (366)
T COG3490 124 ------DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVV 178 (366)
T ss_pred ------CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEE
Confidence 99999887544 789999999655443333333456678899999999984
No 410
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.44 E-value=2.8 Score=35.73 Aligned_cols=140 Identities=13% Similarity=0.155 Sum_probs=76.9
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 155 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (250)
+-.|+.|.+... .+...|+.+..||.|.+|.++.-... .............+ ..
T Consensus 100 PHtIN~i~v~~l----g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~---------------------~i 154 (717)
T PF08728_consen 100 PHTINFIKVGDL----GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRL---------------------KI 154 (717)
T ss_pred CceeeEEEeccc----CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccc---------------------cC
Confidence 344555544431 25678899999999999988641100 00000000000001 11
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC--CC
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE--SE 233 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~ 233 (250)
++...+.. ...+++++++-. ...+++|.++....|.||-....... ........|...|.+++|.+.+ +.
T Consensus 155 ~P~f~~~v-~~SaWGLdIh~~-~~~rlIAVSsNs~~VTVFaf~l~~~r------~~~~~s~~~~hNIP~VSFl~~~~d~~ 226 (717)
T PF08728_consen 155 KPFFHLRV-GASAWGLDIHDY-KKSRLIAVSSNSQEVTVFAFALVDER------FYHVPSHQHSHNIPNVSFLDDDLDPN 226 (717)
T ss_pred CCCeEeec-CCceeEEEEEec-CcceEEEEecCCceEEEEEEeccccc------cccccccccccCCCeeEeecCCCCCc
Confidence 11122222 236788888511 24578888888888888865553111 1111122366678889888633 22
Q ss_pred ---eEEEeeCCceEEEEeC
Q 025649 234 ---NLVVCDTSKVVKVYSI 249 (250)
Q Consensus 234 ---~l~s~~~d~~i~vw~~ 249 (250)
.+++++-.|.+.+|++
T Consensus 227 G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 227 GHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cceEEEEEeccCcEEEEEE
Confidence 6778999999999876
No 411
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=2.2 Score=34.69 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=27.0
Q ss_pred ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649 166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV 203 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 203 (250)
-.+..++|+|.+-....|..-+.|..||+||+.....+
T Consensus 166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 34678899953222467777778999999999876543
No 412
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.23 E-value=0.77 Score=36.40 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=30.9
Q ss_pred ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649 161 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 201 (250)
Q Consensus 161 ~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~ 201 (250)
+......+.++..+ |++++.++...=|+|.++|+.++.
T Consensus 303 l~D~~R~~~~i~~s---P~~~laA~tDslGRV~LiD~~~~~ 340 (415)
T PF14655_consen 303 LPDSKREGESICLS---PSGRLAAVTDSLGRVLLIDVARGI 340 (415)
T ss_pred eccCCceEEEEEEC---CCCCEEEEEcCCCcEEEEECCCCh
Confidence 34445568899999 889998888778999999999873
No 413
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=0.48 Score=41.73 Aligned_cols=71 Identities=7% Similarity=0.020 Sum_probs=49.6
Q ss_pred ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649 166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 245 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 245 (250)
....++.|+|.-|. ..+....|+.|++..+..... ...........++++|+| .|..++.|-..|++.
T Consensus 156 vf~~~~~wnP~vp~--n~av~l~dlsl~V~~~~~~~~---------~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~v 223 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPL--NSAVDLSDLSLRVKSTKQLAQ---------NVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEV 223 (1405)
T ss_pred cccccccccCCccc--hhhhhccccchhhhhhhhhhh---------hhcccCcccceeeEEecc-ccceeeEecCCCeEE
Confidence 34567888854332 355566799999988776421 112234556789999998 788899999999987
Q ss_pred EEe
Q 025649 246 VYS 248 (250)
Q Consensus 246 vw~ 248 (250)
-|.
T Consensus 224 Qy~ 226 (1405)
T KOG3630|consen 224 QYE 226 (1405)
T ss_pred Eee
Confidence 764
No 414
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.10 E-value=0.12 Score=44.06 Aligned_cols=136 Identities=14% Similarity=0.107 Sum_probs=74.0
Q ss_pred eccCCCCCeeeEEEcCCC-CeEEEEecCCCeEEEEEcc--CCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649 16 LRAGHSSICSSVQFIPWK-PWEVISGGLDSKLVMWDFS--KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD 92 (250)
Q Consensus 16 l~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 92 (250)
++ |..+.|-.+.|-... + .+. -.-|.+.+||+. .|+....+...... . ....+.-+.|.|...
T Consensus 128 ~k-gf~G~v~dl~fah~~~p-k~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~-----p---~gs~~~~V~wcp~~~-- 193 (1283)
T KOG1916|consen 128 AK-GFPGGVGDLQFAHTKCP-KGR--RLVGELFVYDVDVLQGEIQPQLEVTPIT-----P---YGSDPQLVSWCPIAV-- 193 (1283)
T ss_pred Hh-cCCCCcccccccccCCh-HHH--HHhhhhheeehHhhccccccceEEeecC-----c---CCCCcceeeeccccc--
Confidence 45 677788888885432 2 232 334788999976 35444333322000 0 011224455555332
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEE
Q 025649 93 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA 172 (250)
Q Consensus 93 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 172 (250)
+.-++..+-.++.+++........ ..+.. +...+..+++-..|-.. +..
T Consensus 194 -~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs-Hs~~~~d~a~~~~g~~~--------------------------l~~-- 242 (1283)
T KOG1916|consen 194 -NKVYICYGLKGGEIRLLNINRALR-SLFRS-HSQRVTDMAFFAEGVLK--------------------------LAS-- 242 (1283)
T ss_pred -ccceeeeccCCCceeEeeechHHH-HHHHh-cCCCcccHHHHhhchhh--------------------------hee--
Confidence 556777777888998877764322 11111 22222222222222111 111
Q ss_pred eecCCCCCcEEEEeeCCCeEEEEecCC
Q 025649 173 FSMFGERGKYLISGGNDKLVKVWDCSR 199 (250)
Q Consensus 173 ~~p~~~~~~~l~s~~~d~~i~iwd~~~ 199 (250)
.| |||..++.++.||.+++|.+.-
T Consensus 243 lS---pDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 243 LS---PDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred eC---CCCcEEEEeecCCccceeeeee
Confidence 57 8999999999999999997653
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.06 E-value=3.5 Score=35.48 Aligned_cols=86 Identities=10% Similarity=0.029 Sum_probs=52.9
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-C--------CC---ccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-G--------RP---NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 89 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~--------~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (250)
-.|..|.++|+|. +|+..|..|.+.+.=.+. | +. .+++..+. ..-.......|..+.|+|..
T Consensus 85 f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~-----~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 85 FEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDE-----RFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred eeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEech-----hhccCCCCceEEEEEEcCCC
Confidence 3688899999999 777777765544432221 1 11 11111110 00011134578899999932
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeCCCce
Q 025649 90 MLDKTNKICVVAKGDGVVDVINIESEL 116 (250)
Q Consensus 90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~ 116 (250)
. ++..|++-..|+++|+||+...+
T Consensus 159 ~---~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 159 E---SDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred C---CCCeEEEEecCCEEEEEecCCCC
Confidence 2 57889999999999999997644
No 416
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.04 E-value=2 Score=32.46 Aligned_cols=175 Identities=10% Similarity=0.084 Sum_probs=83.8
Q ss_pred CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE-EEEeCCCeEEEEeCCCceeEeecc
Q 025649 44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSK 122 (250)
Q Consensus 44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~ 122 (250)
-.|.+||+.+++.++++.++..... ....+..+.+....-. .+..++ ++=+..+.|.++|+.+++......
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~-------~~s~lndl~VD~~~~~-~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~ 105 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAP-------PDSFLNDLVVDVRDGN-CDDGFAYITDSGGPGLIVYDLATGKSWRVLH 105 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS--------TCGGEEEEEEECTTTT-S-SEEEEEEETTTCEEEEEETTTTEEEEEET
T ss_pred cEEEEEECCCCcEEEEEECChHHcc-------cccccceEEEEccCCC-CcceEEEEeCCCcCcEEEEEccCCcEEEEec
Confidence 3789999999999998886622111 2345666666531000 011344 333455789999999987655443
Q ss_pred CCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC---
Q 025649 123 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR--- 199 (250)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~--- 199 (250)
.. ....|+...+. . .... ... ...+..++.+|..++++.|.-+...+ -++|-+.+
T Consensus 106 ~~-------~~~~p~~~~~~-i------~g~~----~~~---~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L 163 (287)
T PF03022_consen 106 NS-------FSPDPDAGPFT-I------GGES----FQW---PDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVL 163 (287)
T ss_dssp CG-------CTTS-SSEEEE-E------TTEE----EEE---TTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHH
T ss_pred CC-------cceecccccee-c------cCce----Eec---CCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHh
Confidence 32 11112111111 0 0000 111 12388888887667777777655432 12333222
Q ss_pred --CcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 200 --FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 200 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
............+..+.........++..+ +|.++++--..+.|..|+.
T Consensus 164 ~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~ 214 (287)
T PF03022_consen 164 RDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDP 214 (287)
T ss_dssp CSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCCTEEEEEET
T ss_pred hCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCCCeEEEEeC
Confidence 111100000011111111123455667776 7877777778888999985
No 417
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.86 E-value=0.71 Score=33.19 Aligned_cols=81 Identities=9% Similarity=0.027 Sum_probs=49.0
Q ss_pred EcCCCCeEEEEecCCCeEEEEEccCCCCccce-ecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeE
Q 025649 29 FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV-NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 107 (250)
Q Consensus 29 ~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i 107 (250)
+..++. +|++.+.+|.+++||+.+++.+..- ....--.............|..+.++. +|.-+++-+ +|..
T Consensus 18 l~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~------~G~PiV~ls-ng~~ 89 (219)
T PF07569_consen 18 LECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS------NGVPIVTLS-NGDS 89 (219)
T ss_pred EEeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC------CCCEEEEEe-CCCE
Confidence 334566 7999999999999999987654322 100000000000002345678888886 787776654 5788
Q ss_pred EEEeCCCcee
Q 025649 108 DVINIESELN 117 (250)
Q Consensus 108 ~~~d~~~~~~ 117 (250)
..|+..-+..
T Consensus 90 y~y~~~L~~W 99 (219)
T PF07569_consen 90 YSYSPDLGCW 99 (219)
T ss_pred EEecccccee
Confidence 9998875443
No 418
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.70 E-value=1.8 Score=38.96 Aligned_cols=164 Identities=12% Similarity=0.053 Sum_probs=84.6
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEE--------cCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQF--------IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~--------~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 73 (250)
+.+|+.+++.....+. +-...|..+.. -|.=+++|+. +.--.|.++-+.-.+.......- .....+
T Consensus 101 L~lWny~~~~e~~~~d-~~shtIl~V~LvkPkpgvFv~~IqhlLvv-aT~~ei~ilgV~~~~~~~~~~~f----~~~~~i 174 (1311)
T KOG1900|consen 101 LFLWNYESDNELAEYD-GLSHTILKVGLVKPKPGVFVPEIQHLLVV-ATPVEIVILGVSFDEFTGELSIF----NTSFKI 174 (1311)
T ss_pred EEEEEcCCCCcccccc-chhhhheeeeeecCCCCcchhhhheeEEe-cccceEEEEEEEeccccCccccc----ccceee
Confidence 6799999877777887 77776776663 2333433433 33445666654322111000000 000111
Q ss_pred ccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCe
Q 025649 74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK 153 (250)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (250)
......|.++.... +|+++++| .|| .+|.+.-......+.. ... .+++....+. ...+
T Consensus 175 ~~dg~~V~~I~~t~------nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~----rc~--Kiclt~s~ls-------~lvP 232 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTE------NGRIFFAG-RDG--NLYELVYQAEDGWFGS----RCR--KICLTKSVLS-------SLVP 232 (1311)
T ss_pred ecCCceEEEEEecc------CCcEEEee-cCC--CEEEEEEeccCchhhc----ccc--cccCchhHHH-------Hhhh
Confidence 12345678888554 77777666 555 4555432110000000 000 0000000000 0001
Q ss_pred eeeeeccc-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC
Q 025649 154 RLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 199 (250)
Q Consensus 154 ~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~ 199 (250)
. +..+ ..+..+|..++.. .....+.+-++.|+|.+||+..
T Consensus 233 s---~~~~~~~~~dpI~qi~ID---~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 233 S---LLSVPGSSKDPIRQITID---NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred h---hhcCCCCCCCcceeeEec---cccceeeeeccCceEEEEEccC
Confidence 1 1223 3677899999998 6777888999999999999987
No 419
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.66 E-value=3.5 Score=34.06 Aligned_cols=129 Identities=10% Similarity=0.034 Sum_probs=67.1
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 155 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (250)
.-+.|+++.|.|.... +.-.+++.-..+.|.+|.+...... .++.+. ....
T Consensus 55 qFEhV~GlsW~P~~~~--~~paLLAVQHkkhVtVWqL~~s~~e------------------~~K~l~---------sQtc 105 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTA--DTPALLAVQHKKHVTVWQLCPSTTE------------------RNKLLM---------SQTC 105 (671)
T ss_pred ccceeeeeeecCcccC--CCCceEEEeccceEEEEEeccCccc------------------ccccee---------eeee
Confidence 3457999999984321 2224444456689999988631100 011111 0011
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
+....+.... ..+.|+ |....|+.-.....=.+++++... ..+..-..-.+.|.+.+|.. ||+.|
T Consensus 106 Ei~e~~pvLp---QGCVWH---Pk~~iL~VLT~~dvSV~~sV~~d~--------srVkaDi~~~G~IhCACWT~-DG~RL 170 (671)
T PF15390_consen 106 EIREPFPVLP---QGCVWH---PKKAILTVLTARDVSVLPSVHCDS--------SRVKADIKTSGLIHCACWTK-DGQRL 170 (671)
T ss_pred eccCCcccCC---Cccccc---CCCceEEEEecCceeEeeeeeeCC--------ceEEEeccCCceEEEEEecC-cCCEE
Confidence 1111122111 245677 666666554444344455555432 33334445567799999997 77776
Q ss_pred EEe-eCCceEEEEe
Q 025649 236 VVC-DTSKVVKVYS 248 (250)
Q Consensus 236 ~s~-~~d~~i~vw~ 248 (250)
+.+ +..=.-++||
T Consensus 171 VVAvGSsLHSyiWd 184 (671)
T PF15390_consen 171 VVAVGSSLHSYIWD 184 (671)
T ss_pred EEEeCCeEEEEEec
Confidence 654 3334567776
No 420
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.47 E-value=3.5 Score=33.55 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=46.0
Q ss_pred cEEEEEeecCCCCCcEEEEeeCCCeEEEEecC---------CCcceecc---cccceeeeeeccCCceeEEEecCCC--C
Q 025649 167 AASCVAFSMFGERGKYLISGGNDKLVKVWDCS---------RFQGVQTS---INNDLLIKNINLNKKVNWLCTTPTE--S 232 (250)
Q Consensus 167 ~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~---------~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~--~ 232 (250)
.|..+..+ +.|..++-.+.+|.+.++=.+ .++..-.. +-...+ ......-.+..++|+|.. .
T Consensus 105 eV~~vl~s---~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~-ftss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 105 EVYQVLLS---PTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERF-FTSSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred EEEEEEec---CCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccccee-eccCCceeeeeccccCCccCC
Confidence 56777788 788888888878866554311 11111000 000110 111122246777999843 3
Q ss_pred CeEEEeeCCceEEEEeCC
Q 025649 233 ENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 233 ~~l~s~~~d~~i~vw~~~ 250 (250)
..+..-+.|..|++||++
T Consensus 181 ~hL~iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLS 198 (741)
T ss_pred ceEEEEecCcEEEEEecC
Confidence 567777789999999974
No 421
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.43 E-value=1.7 Score=29.90 Aligned_cols=36 Identities=11% Similarity=0.072 Sum_probs=29.3
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 114 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 114 (250)
.+.+++|||...-...+-+|++...++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 788999999655444567899999999999998774
No 422
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.27 E-value=3.4 Score=35.27 Aligned_cols=131 Identities=9% Similarity=-0.083 Sum_probs=73.1
Q ss_pred eeeEEEcCCC-CeEEEEecCCCeEEEEEccCCC-CccceecCCC-----CCCCCCCcccCCCceeEEecC--CCcccCCC
Q 025649 24 CSSVQFIPWK-PWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLP-----ENNGNAGQCYNPAFVHAIAIP--DADMLDKT 94 (250)
Q Consensus 24 v~~l~~~~~~-~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~ 94 (250)
|+.|....-| ...|+.|.+||.|.+|.+++-. .+........ ....+.-.......+++++++ . .
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~------~ 176 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK------K 176 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC------c
Confidence 5555544322 2389999999999999874210 0000000000 000011111234567888887 5 6
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEee
Q 025649 95 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS 174 (250)
Q Consensus 95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 174 (250)
.++||+++....|.||-........ . .... ..|...|.+|.|-
T Consensus 177 ~rlIAVSsNs~~VTVFaf~l~~~r~----~--------------------------------~~~s-~~~~hNIP~VSFl 219 (717)
T PF08728_consen 177 SRLIAVSSNSQEVTVFAFALVDERF----Y--------------------------------HVPS-HQHSHNIPNVSFL 219 (717)
T ss_pred ceEEEEecCCceEEEEEEecccccc----c--------------------------------cccc-cccccCCCeeEee
Confidence 7888888888888887654321000 0 0000 1155678899997
Q ss_pred cCC--CCCc-EEEEeeCCCeEEEEec
Q 025649 175 MFG--ERGK-YLISGGNDKLVKVWDC 197 (250)
Q Consensus 175 p~~--~~~~-~l~s~~~d~~i~iwd~ 197 (250)
+.. +.|. .+++++-.|.+.+|++
T Consensus 220 ~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 220 DDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cCCCCCccceEEEEEeccCcEEEEEE
Confidence 432 2232 7778888999999888
No 423
>PHA02790 Kelch-like protein; Provisional
Probab=93.21 E-value=4 Score=33.42 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=17.9
Q ss_pred CCCEEEEEeCC---CeEEEEeCCCceeEe
Q 025649 94 TNKICVVAKGD---GVVDVINIESELNIS 119 (250)
Q Consensus 94 ~~~~l~~~~~d---~~i~~~d~~~~~~~~ 119 (250)
++++.+.|+.+ ..+..||.++++...
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~ 390 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQF 390 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEe
Confidence 67777887754 347788988766544
No 424
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.09 E-value=0.083 Score=44.98 Aligned_cols=75 Identities=11% Similarity=0.091 Sum_probs=53.5
Q ss_pred cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec----------CCCCCe
Q 025649 165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT----------PTESEN 234 (250)
Q Consensus 165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------~~~~~~ 234 (250)
...+.-|.|.|+.++.-++..+-.++.|++-...... ...+.+|+..+..+++. ++||..
T Consensus 180 gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv 249 (1283)
T KOG1916|consen 180 GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL----------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTV 249 (1283)
T ss_pred CCCcceeeecccccccceeeeccCCCceeEeeechHH----------HHHHHhcCCCcccHHHHhhchhhheeeCCCCcE
Confidence 3445677888877887788888888888887776632 12334576666555432 249999
Q ss_pred EEEeeCCceEEEEeC
Q 025649 235 LVVCDTSKVVKVYSI 249 (250)
Q Consensus 235 l~s~~~d~~i~vw~~ 249 (250)
|+.++.||.++.|.+
T Consensus 250 ~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 250 FAWAISDGSVGFYQI 264 (1283)
T ss_pred EEEeecCCccceeee
Confidence 999999999999975
No 425
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.89 E-value=3.3 Score=31.50 Aligned_cols=152 Identities=12% Similarity=-0.007 Sum_probs=74.1
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
.-.+.+..+..+++|+ ++++++.-..+.-||.-...- ...... ....|.+|.|.| ++.+.
T Consensus 142 ~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~w-~~~~r~------------~~~riq~~gf~~------~~~lw 201 (302)
T PF14870_consen 142 ETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQTTW-QPHNRN------------SSRRIQSMGFSP------DGNLW 201 (302)
T ss_dssp S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS--EEEE--------------SSS-EEEEEE-T------TS-EE
T ss_pred CCcceeEeEEECCCCc-EEEEECcccEEEEecCCCccc-eEEccC------------ccceehhceecC------CCCEE
Confidence 3456788888999998 787777766667787532111 111111 357899999998 87776
Q ss_pred EEEeCCCeEEEEeCCC-ceeEee--ccC-CCCCCccceeecccceeEEEeeeeeec---c-CeeeeeeccccCccccEEE
Q 025649 99 VVAKGDGVVDVINIES-ELNISR--SKS-TTKPLKGSQSTSKVNIRDAEMEILDQS---G-GKRLHLDYSVGGHTAAASC 170 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~-~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~h~~~v~~ 170 (250)
+.+ ..|.|++=+... ...-.. ... .....+..+++.+++...+..+.-... + .+.-+.......-....+.
T Consensus 202 ~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~ 280 (302)
T PF14870_consen 202 MLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYR 280 (302)
T ss_dssp EEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---E
T ss_pred EEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEE
Confidence 655 889999888322 222111 111 122347888999888777742221111 1 2222222222333456788
Q ss_pred EEeecCCCCCcEEEEeeCCCeEEEE
Q 025649 171 VAFSMFGERGKYLISGGNDKLVKVW 195 (250)
Q Consensus 171 ~~~~p~~~~~~~l~s~~~d~~i~iw 195 (250)
+.|. +..+-++.| .+|.|--|
T Consensus 281 i~f~---~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 281 IVFV---NPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp EEEE---ETTEEEEE--STTEEEEE
T ss_pred EEEc---CCCceEEEC-CCcEEEEe
Confidence 8987 444555555 57766544
No 426
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.83 E-value=3.4 Score=31.94 Aligned_cols=111 Identities=11% Similarity=-0.050 Sum_probs=55.7
Q ss_pred eeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC
Q 025649 24 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 103 (250)
Q Consensus 24 v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 103 (250)
-..|+|.|+|+ +|++ ...|.|++++ ..+.....+..- .............++++|.- ....+|.+...
T Consensus 4 P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~~v~~~------~~v~~~~~~gllgia~~p~f---~~n~~lYv~~t 71 (331)
T PF07995_consen 4 PRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKTPVADL------PEVFADGERGLLGIAFHPDF---ASNGYLYVYYT 71 (331)
T ss_dssp EEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECEEEEE-------TTTBTSTTBSEEEEEE-TTC---CCC-EEEEEEE
T ss_pred ceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcceeccc------ccccccccCCcccceecccc---CCCCEEEEEEE
Confidence 46899999997 6655 5599999999 334331111100 00112234567888998811 12334433332
Q ss_pred -C--------CeEEEEeCCCc-------eeEe-eccC--CCCCCccceeecccceeEEEeee
Q 025649 104 -D--------GVVDVINIESE-------LNIS-RSKS--TTKPLKGSQSTSKVNIRDAEMEI 146 (250)
Q Consensus 104 -d--------~~i~~~d~~~~-------~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 146 (250)
. ..|.-|....+ +.+. .... .....-..+.|.|||.+++++|.
T Consensus 72 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 72 NADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred cccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 1 23444444332 1111 1111 12345566999999987776554
No 427
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.57 E-value=6.9 Score=34.49 Aligned_cols=105 Identities=13% Similarity=0.035 Sum_probs=61.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeeccc--cee---EEEeeeeeeccCe-----eee--eeccc
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV--NIR---DAEMEILDQSGGK-----RLH--LDYSV 161 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~-----~~~--~~~~~ 161 (250)
+...++.++.++.+...++..+......+......+.|+.++|- ++. ++.+|.|+..... ... +...+
T Consensus 498 n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l 577 (1096)
T KOG1897|consen 498 NASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL 577 (1096)
T ss_pred cceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc
Confidence 56677777777877777777655333333334478899999874 333 5558888765421 111 11112
Q ss_pred cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC
Q 025649 162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 199 (250)
Q Consensus 162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~ 199 (250)
.+ .....++-+..+..+..+|.++..||.+..|-+..
T Consensus 578 ~~-~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 578 SG-EIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred CC-CccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 22 11223333332225678999999999988775544
No 428
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=4.7 Score=32.28 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=65.2
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 155 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (250)
..++|.++.|++ |++.+|+--.+++|.+++....+....
T Consensus 65 d~G~I~SIkFSl------DnkilAVQR~~~~v~f~nf~~d~~~l~----------------------------------- 103 (657)
T KOG2377|consen 65 DKGEIKSIKFSL------DNKILAVQRTSKTVDFCNFIPDNSQLE----------------------------------- 103 (657)
T ss_pred CCCceeEEEecc------CcceEEEEecCceEEEEecCCCchhhH-----------------------------------
Confidence 457899999999 999999999999999998753221111
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 234 (250)
...+.+.....|....|+ .+ .-+|--+. .-+-+|-..... ..++....|.-.|++-+|.+ +-..
T Consensus 104 -~~~~ck~k~~~IlGF~W~---~s-~e~A~i~~-~G~e~y~v~pek--------rslRlVks~~~nvnWy~yc~-et~v 167 (657)
T KOG2377|consen 104 -YTQECKTKNANILGFCWT---SS-TEIAFITD-QGIEFYQVLPEK--------RSLRLVKSHNLNVNWYMYCP-ETAV 167 (657)
T ss_pred -HHHHhccCcceeEEEEEe---cC-eeEEEEec-CCeEEEEEchhh--------hhhhhhhhcccCccEEEEcc-ccce
Confidence 112233344557777777 43 44444442 335566554432 33445567778888888887 4443
No 429
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.28 E-value=3.5 Score=30.45 Aligned_cols=147 Identities=12% Similarity=-0.083 Sum_probs=75.5
Q ss_pred ceeEEecCCCcccCCCCCEEEEEe---CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee------
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAK---GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ------ 149 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 149 (250)
.+.+.++++ +++.++... ....+.++.... ...... ....+...+|++++...........
T Consensus 25 ~~~s~AvS~------dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSP------DGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECC------CCCeEEEEEEcCCCCEEEEEcCCC--cceeec--cCCccccccccCCCCEEEEEcCCCceEEEEe
Confidence 577889998 888776655 334455554433 222221 2246777888888766653111000
Q ss_pred -ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEee---CCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649 150 -SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 225 (250)
Q Consensus 150 -~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (250)
.........-....-...|..+.+| |+|..++.-. .++.|.+=-+.....-....-.............+..+
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vS---pDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v 171 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVS---PDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDV 171 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEEC---CCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceee
Confidence 0011000001111111289999999 8998877654 35677776544221110000001222222345678999
Q ss_pred EecCCCCCeEEEee
Q 025649 226 CTTPTESENLVVCD 239 (250)
Q Consensus 226 ~~~~~~~~~l~s~~ 239 (250)
.|.+ ++.+++.+.
T Consensus 172 ~W~~-~~~L~V~~~ 184 (253)
T PF10647_consen 172 AWSD-DSTLVVLGR 184 (253)
T ss_pred eecC-CCEEEEEeC
Confidence 9997 666555544
No 430
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.21 E-value=0.74 Score=22.46 Aligned_cols=30 Identities=7% Similarity=0.075 Sum_probs=20.5
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCC--CeEEEE
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLD--SKLVMW 49 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~d--g~v~iw 49 (250)
....-....|+|||+.++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455677889999999666666666 666665
No 431
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.47 E-value=4.1 Score=29.52 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=39.7
Q ss_pred CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE
Q 025649 178 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV 237 (250)
Q Consensus 178 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 237 (250)
.+|++.++.-..++|...|..++ +++..+.-....+++++|--++-..|++
T Consensus 221 ~eG~L~Va~~ng~~V~~~dp~tG---------K~L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 221 TEGNLYVATFNGGTVQKVDPTTG---------KILLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred cCCcEEEEEecCcEEEEECCCCC---------cEEEEEEcCCCceEEEEecCCCccEEEE
Confidence 67888888888999999999999 6666666678889999987543344443
No 432
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.12 E-value=9 Score=32.78 Aligned_cols=79 Identities=9% Similarity=0.033 Sum_probs=48.7
Q ss_pred CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe--e
Q 025649 43 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS--R 120 (250)
Q Consensus 43 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~ 120 (250)
-..|+|+++ +|+.+..+... ...+-.+.|+ +...|++...+|++++|++-...... .
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~-------------~~~lI~mgWs-------~~eeLI~v~k~g~v~Vy~~~ge~ie~~sv 121 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWK-------------HGELIGMGWS-------DDEELICVQKDGTVHVYGLLGEFIESNSV 121 (829)
T ss_pred ceeEEEEec-cccchHHHHhc-------------CCCeeeeccc-------CCceEEEEeccceEEEeecchhhhccccc
Confidence 346888888 47777666533 3367889999 46677777899999999997644332 1
Q ss_pred ccCCCCCCccceeecccceeEE
Q 025649 121 SKSTTKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~ 142 (250)
........|....+..+|-.+.
T Consensus 122 g~e~~~~~I~ec~~f~~GVavl 143 (829)
T KOG2280|consen 122 GFESQMSDIVECRFFHNGVAVL 143 (829)
T ss_pred ccccccCceeEEEEecCceEEE
Confidence 1122223344444444555544
No 433
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.02 E-value=0.71 Score=40.78 Aligned_cols=102 Identities=10% Similarity=-0.089 Sum_probs=70.3
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 100 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 100 (250)
....++.|+|.-....+.+..|+.|++..+..- ..+..+. .....++++|+| .|+.++.
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p--------------~t~~~Tav~WSp------rGKQl~i 215 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP--------------VTNSQTAVLWSP------RGKQLFI 215 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC--------------cccceeeEEecc------ccceeeE
Confidence 345688899987656788888999998876532 2223333 235679999999 9999999
Q ss_pred EeCCCeEEEEeCCCc--eeEeeccCCCCCCccceeecccceeEEE
Q 025649 101 AKGDGVVDVINIESE--LNISRSKSTTKPLKGSQSTSKVNIRDAE 143 (250)
Q Consensus 101 ~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (250)
|-..|++.=|...-. ..+......+...+.++.|-....+++.
T Consensus 216 G~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 216 GRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 999999988876532 2222222222467888888777776664
No 434
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.81 E-value=3.9 Score=33.79 Aligned_cols=108 Identities=11% Similarity=0.113 Sum_probs=68.1
Q ss_pred CCCCCeeeEEEcCCC----CeEEEEecCCCeEEEEEccC-----CCCccc--eecCCCCCCCCCCcccCCCceeEEecCC
Q 025649 19 GHSSICSSVQFIPWK----PWEVISGGLDSKLVMWDFSK-----GRPNKI--VNFGLPENNGNAGQCYNPAFVHAIAIPD 87 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~----~~~l~s~s~dg~v~iwd~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 87 (250)
|.-..|..+.|.|-+ + -|++......|.+|-+.- ++.+.. -.... . .+---.+..|+|
T Consensus 54 GqFEhV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e-------~---~pvLpQGCVWHP 122 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE-------P---FPVLPQGCVWHP 122 (671)
T ss_pred eccceeeeeeecCcccCCCC-ceEEEeccceEEEEEeccCccccccceeeeeeeccC-------C---cccCCCcccccC
Confidence 344578999999863 4 455566678999999852 221111 11000 0 111224566777
Q ss_pred CcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE
Q 025649 88 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 143 (250)
Q Consensus 88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (250)
....|++-.....-.+++++.............+.|.|..|.+||+.++.
T Consensus 123 ------k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 123 ------KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred ------CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence 77888777666655677777655555545555689999999999988873
No 435
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.70 E-value=7.9 Score=31.40 Aligned_cols=120 Identities=8% Similarity=-0.041 Sum_probs=62.2
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 100 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 100 (250)
-..-..|+|.|+++ +|++--..|.|++++..++.......+. . ............++++|.-.....+.+|..
T Consensus 29 L~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~--~----v~~~~ge~GLlglal~PdF~~~~~n~~lYv 101 (454)
T TIGR03606 29 LNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLP--E----IVNDAQHNGLLGLALHPDFMQEKGNPYVYI 101 (454)
T ss_pred CCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCC--c----eeccCCCCceeeEEECCCccccCCCcEEEE
Confidence 34567999999997 6776655699999986554321111111 0 000002456788899872100012334444
Q ss_pred Ee----------CCCeEEEEeCCCc-------eeEe-eccCCCCCCccceeecccceeEEEeeee
Q 025649 101 AK----------GDGVVDVINIESE-------LNIS-RSKSTTKPLKGSQSTSKVNIRDAEMEIL 147 (250)
Q Consensus 101 ~~----------~d~~i~~~d~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (250)
.. ....|.-|.+... +.+. .........-..+.|.|||.+++++|..
T Consensus 102 syt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 102 SYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred EEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 42 1234545554321 1111 1111112345678899999888765543
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.34 E-value=8.8 Score=31.37 Aligned_cols=131 Identities=12% Similarity=0.140 Sum_probs=70.5
Q ss_pred EEEcccceeeeeeccCCCCCeeeEEEcCCCC-------eEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCccc
Q 025649 4 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKP-------WEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 4 iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~-------~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
-.|++-|+.+.... -|... -+.|.|+.+ ..|+--|.. .|.--|.+- |..+....
T Consensus 494 kmDIErGkvveeW~-~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~-svFrIDPR~~gNKi~v~e-------------- 555 (776)
T COG5167 494 KMDIERGKVVEEWD-LKDDV--VVQYNPYFKFQQMTDEQTLVGLSDY-SVFRIDPRARGNKIKVVE-------------- 555 (776)
T ss_pred eeecccceeeeEee-cCCcc--eeecCCchhHHhcCccceEEeeccc-ceEEecccccCCceeeee--------------
Confidence 34677788888877 56554 567777542 134444443 333335432 22222221
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 155 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (250)
....++.-.|+..+- ..+.++++++..|.|++||--....
T Consensus 556 sKdY~tKn~Fss~~t--TesGyIa~as~kGDirLyDRig~rA-------------------------------------- 595 (776)
T COG5167 556 SKDYKTKNKFSSGMT--TESGYIAAASRKGDIRLYDRIGKRA-------------------------------------- 595 (776)
T ss_pred ehhcccccccccccc--ccCceEEEecCCCceeeehhhcchh--------------------------------------
Confidence 112222222322111 2567999999999999999643110
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 198 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~ 198 (250)
...+++-...|..+..+ .+|.++++.+ ...+.+-|++
T Consensus 596 --KtalP~lG~aIk~idvt---a~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 596 --KTALPGLGDAIKHIDVT---ANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred --hhcCcccccceeeeEee---cCCcEEEEee-cceEEEEecc
Confidence 11344455666677766 6777666655 3466666654
No 437
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.34 E-value=6.3 Score=29.67 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=38.8
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec------CCCeEEEEEccCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG------LDSKLVMWDFSKGR 55 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s------~dg~v~iwd~~~~~ 55 (250)
|.+||..+.+-..--. +-.+.|++|.|..+.+ +++.|. ....+..||+.+..
T Consensus 18 lC~yd~~~~qW~~~g~-~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPGN-GISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred EEEEECCCCEeecCCC-CceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCCe
Confidence 6789988777665555 6678999999996666 777764 45678889987653
No 438
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.33 E-value=9.5 Score=31.75 Aligned_cols=102 Identities=16% Similarity=0.063 Sum_probs=59.0
Q ss_pred cEEEEcccceeeeeeccCCCCCeee----------EEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSS----------VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNA 71 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~----------l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 71 (250)
|.-.|.++|+.+.++...-...+.. +++. +. .++.++.|+.|.-.|.++|+.+.......
T Consensus 81 v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~-~v~v~t~dg~l~ALDa~TGk~~W~~~~~~------- 150 (527)
T TIGR03075 81 VYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DG-KVFFGTLDARLVALDAKTGKVVWSKKNGD------- 150 (527)
T ss_pred EEEEECCCCceeeEecCCCCcccccccccccccccceEE--CC-EEEEEcCCCEEEEEECCCCCEEeeccccc-------
Confidence 4456778888887765111111111 1222 23 57778889999999999999887765331
Q ss_pred CcccCCCceeEEecCCCcccCCCCCEEEEEe------CCCeEEEEeCCCceeEeecc
Q 025649 72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAK------GDGVVDVINIESELNISRSK 122 (250)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~ 122 (250)
...-..+.-+|... ++. ++++. .+|.|.-+|.++|+.+....
T Consensus 151 -----~~~~~~~tssP~v~---~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 151 -----YKAGYTITAAPLVV---KGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred -----ccccccccCCcEEE---CCE-EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 00001122222211 344 44443 26899999999998876543
No 439
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.24 E-value=7.7 Score=30.53 Aligned_cols=18 Identities=11% Similarity=-0.158 Sum_probs=13.3
Q ss_pred CCeeeEEEcCCCCeEEEEe
Q 025649 22 SICSSVQFIPWKPWEVISG 40 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~ 40 (250)
.....|+|.++|. ++++-
T Consensus 14 ~~P~~ia~d~~G~-l~V~e 31 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAE 31 (367)
T ss_pred CCCceeeECCCCC-EEEEe
Confidence 3456899999998 66654
No 440
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.19 E-value=0.56 Score=38.96 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=28.5
Q ss_pred CCeeeEEEcC----CCCeEEEEecCCCeEEEEEccCCCCcccee
Q 025649 22 SICSSVQFIP----WKPWEVISGGLDSKLVMWDFSKGRPNKIVN 61 (250)
Q Consensus 22 ~~v~~l~~~~----~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 61 (250)
..+..+++++ +.. +|++.+.|+++|+||+.+++++....
T Consensus 215 ~~~~~~~~~~~~~~~~~-~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDT-FLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp --EEEEEE-----ETTT-EEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CccceEEEecceeCCCC-EEEEEeCCCeEEEEECCCCeEEEEec
Confidence 3455666666 445 89999999999999999999866654
No 441
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.90 E-value=6.8 Score=29.44 Aligned_cols=122 Identities=12% Similarity=0.156 Sum_probs=66.2
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeee
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL 157 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (250)
..+.++.|+| +.+.|++......-.++=...|+.+..+..
T Consensus 86 ~nvS~LTynp------~~rtLFav~n~p~~iVElt~~GdlirtiPL---------------------------------- 125 (316)
T COG3204 86 ANVSSLTYNP------DTRTLFAVTNKPAAIVELTKEGDLIRTIPL---------------------------------- 125 (316)
T ss_pred ccccceeeCC------CcceEEEecCCCceEEEEecCCceEEEecc----------------------------------
Confidence 4588999998 777776666555555554444554433322
Q ss_pred eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-CCceeEEEecCCCCCeEE
Q 025649 158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLV 236 (250)
Q Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~ 236 (250)
.+- .....++|. .+|++.++-=.++.+.++.+............+..-....+ +..--.++|.|.++. |.
T Consensus 126 ----~g~-~DpE~Ieyi---g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~-l~ 196 (316)
T COG3204 126 ----TGF-SDPETIEYI---GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR-LF 196 (316)
T ss_pred ----ccc-CChhHeEEe---cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCce-EE
Confidence 221 123456676 56666666666778887776655332211111111111122 455677899885554 44
Q ss_pred EeeCCceEEEEe
Q 025649 237 VCDTSKVVKVYS 248 (250)
Q Consensus 237 s~~~d~~i~vw~ 248 (250)
.+-.-.-+.||.
T Consensus 197 ~aKEr~P~~I~~ 208 (316)
T COG3204 197 VAKERNPIGIFE 208 (316)
T ss_pred EEEccCCcEEEE
Confidence 444444566654
No 442
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.73 E-value=2.6 Score=30.88 Aligned_cols=87 Identities=13% Similarity=0.119 Sum_probs=46.3
Q ss_pred EEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC-C--CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL-D--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 3 ~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~-d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
.+||+.+++.. .+.....-...+=.+.++|+ +|.+|+. + ..+++++..+......+... ...
T Consensus 49 ~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~-ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~-------------~~~ 113 (243)
T PF07250_consen 49 VEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGR-LLQTGGDNDGNKAIRIFTPCTSDGTCDWTES-------------PND 113 (243)
T ss_pred EEEecCCCcEE-eccCCCCCcccCcCCCCCCC-EEEeCCCCccccceEEEecCCCCCCCCceEC-------------ccc
Confidence 47888877653 33312333444556789998 7888765 2 34777776431111111100 111
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCC
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGD 104 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d 104 (250)
...-.|.|....-+||+.|+.|+.+
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcC
Confidence 2222343333333489999999876
No 443
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.51 E-value=7.8 Score=29.54 Aligned_cols=150 Identities=10% Similarity=0.008 Sum_probs=66.3
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-----ee-ecc
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-----LD-QSG 151 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~ 151 (250)
..+..+..++ ++++++++..-....-||.-...-...... ....+..+.|+|++........ .+ ...
T Consensus 145 gs~~~~~r~~------dG~~vavs~~G~~~~s~~~G~~~w~~~~r~-~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 145 GSINDITRSS------DGRYVAVSSRGNFYSSWDPGQTTWQPHNRN-SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDD 217 (302)
T ss_dssp --EEEEEE-T------TS-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTE
T ss_pred ceeEeEEECC------CCcEEEEECcccEEEEecCCCccceEEccC-ccceehhceecCCCCEEEEeCCcEEEEccCCCC
Confidence 3455666666 899998887766667787654322222222 2378899999999877553211 11 001
Q ss_pred Ceee-eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCC
Q 025649 152 GKRL-HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT 230 (250)
Q Consensus 152 ~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 230 (250)
.... +.+..+..-.-.+..++|. +++...++|+ .|.+.. ....++.=+ .......-....+.+.|.+
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~---~~~~~wa~gg-~G~l~~-S~DgGktW~------~~~~~~~~~~n~~~i~f~~- 285 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYR---PPNEIWAVGG-SGTLLV-STDGGKTWQ------KDRVGENVPSNLYRIVFVN- 285 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEES---SSS-EEEEES-TT-EEE-ESSTTSS-E------E-GGGTTSSS---EEEEEE-
T ss_pred ccccccccCCcccCceeeEEEEec---CCCCEEEEeC-CccEEE-eCCCCccce------ECccccCCCCceEEEEEcC-
Confidence 1111 1112222233457899998 6777777666 444333 233332110 0001112344577788875
Q ss_pred CCCeEEEeeCCceEEEE
Q 025649 231 ESENLVVCDTSKVVKVY 247 (250)
Q Consensus 231 ~~~~l~s~~~d~~i~vw 247 (250)
+.+-++. +.+|.|.-|
T Consensus 286 ~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 286 PDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp TTEEEEE--STTEEEEE
T ss_pred CCceEEE-CCCcEEEEe
Confidence 3344444 457877655
No 444
>PHA02790 Kelch-like protein; Provisional
Probab=89.27 E-value=11 Score=30.95 Aligned_cols=25 Identities=20% Similarity=0.053 Sum_probs=16.9
Q ss_pred CCCEEEEEeCC--CeEEEEeCCCceeE
Q 025649 94 TNKICVVAKGD--GVVDVINIESELNI 118 (250)
Q Consensus 94 ~~~~l~~~~~d--~~i~~~d~~~~~~~ 118 (250)
++.+.+.|+.+ ..+..||..+++..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~ 344 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWV 344 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEE
Confidence 67777777753 45788887765543
No 445
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=89.10 E-value=1.1 Score=21.76 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=23.9
Q ss_pred EEEEecCCCeEEEEEccCCCCccceecC
Q 025649 36 EVISGGLDSKLVMWDFSKGRPNKIVNFG 63 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 63 (250)
.+..++.+|.|.-.|.++|+.+..++.+
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4566699999999999999999888754
No 446
>PHA03098 kelch-like protein; Provisional
Probab=88.71 E-value=13 Score=30.99 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=14.8
Q ss_pred CCcEEEEeeCC-----CeEEEEecCCC
Q 025649 179 RGKYLISGGND-----KLVKVWDCSRF 200 (250)
Q Consensus 179 ~~~~l~s~~~d-----~~i~iwd~~~~ 200 (250)
++++++.|+.+ +.+.+||..+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 45666666643 46888888775
No 447
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.48 E-value=5.6 Score=34.66 Aligned_cols=93 Identities=10% Similarity=0.091 Sum_probs=57.0
Q ss_pred CeEEEEEccCCCCccceecCCCCCCCCCCcccC-C----CceeEEecCCCcccCCCCCEEEE-EeCCCeEEEEeCCCcee
Q 025649 44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN-P----AFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIESELN 117 (250)
Q Consensus 44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~ 117 (250)
|.|.-+|+.+++.+.....+............+ + .....-... ..+.+++. +..|+.++-+|.++|+.
T Consensus 641 G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~------TagglvF~~gt~d~~l~A~D~~tGk~ 714 (764)
T TIGR03074 641 GYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLA------TAGGLVFIGATQDNYLRAYDLSTGKE 714 (764)
T ss_pred EEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEE------EcCCEEEEEeCCCCEEEEEECCCCce
Confidence 789999999999888777541111100000000 0 001110011 14566665 78999999999999999
Q ss_pred EeeccCCCCCCccceeec-ccceeEE
Q 025649 118 ISRSKSTTKPLKGSQSTS-KVNIRDA 142 (250)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~-~~~~~~~ 142 (250)
+.+........-.-+.+. .+|++.+
T Consensus 715 lW~~~l~~~~~a~P~tY~~~~GkQYV 740 (764)
T TIGR03074 715 LWKARLPAGGQATPMTYMGKDGKQYV 740 (764)
T ss_pred eeEeeCCCCcccCCEEEEecCCEEEE
Confidence 988777755555566776 6777665
No 448
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.39 E-value=1.9 Score=21.16 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=16.5
Q ss_pred CCCcEEEEe-eCCCeEEEEecCCC
Q 025649 178 ERGKYLISG-GNDKLVKVWDCSRF 200 (250)
Q Consensus 178 ~~~~~l~s~-~~d~~i~iwd~~~~ 200 (250)
|++++|..+ ..++.|.++|..++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~ 24 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN 24 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC
Confidence 355655554 45889999999886
No 449
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.19 E-value=12 Score=30.12 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=42.4
Q ss_pred ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649 164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 239 (250)
Q Consensus 164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 239 (250)
.+++|.++.|| +|.+.+|.--.|+.|.+++........ ......+..+..|...+|.. ..-+|.-.
T Consensus 65 d~G~I~SIkFS---lDnkilAVQR~~~~v~f~nf~~d~~~l-----~~~~~ck~k~~~IlGF~W~~--s~e~A~i~ 130 (657)
T KOG2377|consen 65 DKGEIKSIKFS---LDNKILAVQRTSKTVDFCNFIPDNSQL-----EYTQECKTKNANILGFCWTS--STEIAFIT 130 (657)
T ss_pred CCCceeEEEec---cCcceEEEEecCceEEEEecCCCchhh-----HHHHHhccCcceeEEEEEec--CeeEEEEe
Confidence 45699999999 899999999999999999985432211 11112223334466667763 23344444
No 450
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.68 E-value=7.2 Score=26.88 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=25.9
Q ss_pred ccEEEEEeec--CCCC-CcEEEEeeCCCeEEEEecCC
Q 025649 166 AAASCVAFSM--FGER-GKYLISGGNDKLVKVWDCSR 199 (250)
Q Consensus 166 ~~v~~~~~~p--~~~~-~~~l~s~~~d~~i~iwd~~~ 199 (250)
..+.+++||| ..++ +-+|++...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3789999996 2223 34788889999999998764
No 451
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.52 E-value=17 Score=31.96 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=64.2
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC--ccceecCCCCCCCCCCcc-cCC---CceeEEecCCCcccCCCC
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQC-YNP---AFVHAIAIPDADMLDKTN 95 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~~~~~~~~~~~ 95 (250)
.+..+++|+|.....||.....|...||++..... ...+... ....+.. ..+ +.-..+.|.+ +.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~----~~~~gsi~~d~~e~s~w~rI~W~~------~~ 215 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLS----RNISGSIIFDPEELSNWKRILWVS------DS 215 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeec----cCCCccccCCCcccCcceeeEecC------CC
Confidence 36779999998766899999999999999932111 1111111 0000111 111 2334566765 67
Q ss_pred CEEEEEeCCCeEEEEeCCCceeEe-eccCCCCCCccceeeccc
Q 025649 96 KICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKV 137 (250)
Q Consensus 96 ~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~ 137 (250)
+.|++++. ..+.++|+++..... .........+..+.-+|.
T Consensus 216 ~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 216 NRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred CEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 77777755 668999999866533 333334466777777776
No 452
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.08 E-value=13 Score=33.99 Aligned_cols=80 Identities=15% Similarity=0.271 Sum_probs=49.5
Q ss_pred CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC--CCc------ceeccc--------ccceeeeeeccCCceeEEE
Q 025649 163 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS--RFQ------GVQTSI--------NNDLLIKNINLNKKVNWLC 226 (250)
Q Consensus 163 ~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~--~~~------~~~~~~--------~~~~~~~~~~~~~~v~~~~ 226 (250)
...-.|.|+... .+|+.+++|- || .+|.+. ... +.+... .+.++.....+.++|..+.
T Consensus 176 ~dg~~V~~I~~t---~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 176 VDGVSVNCITYT---ENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred cCCceEEEEEec---cCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 345678999977 7898888775 55 455432 111 111000 0112222235677899998
Q ss_pred ecCCCCCeEEEeeCCceEEEEeC
Q 025649 227 TTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 227 ~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
... .-..+.+-+..|+|.+|++
T Consensus 250 ID~-SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 250 IDN-SRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred ecc-ccceeeeeccCceEEEEEc
Confidence 864 4557889999999999997
No 453
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.02 E-value=2 Score=19.80 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=20.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeEee
Q 025649 95 NKICVVAKGDGVVDVINIESELNISR 120 (250)
Q Consensus 95 ~~~l~~~~~d~~i~~~d~~~~~~~~~ 120 (250)
+..++.++.+|.+..+|.++|+....
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 34677888999999999998876543
No 454
>PRK13684 Ycf48-like protein; Provisional
Probab=86.83 E-value=13 Score=28.89 Aligned_cols=149 Identities=9% Similarity=-0.018 Sum_probs=74.7
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEE-EEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVM-WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 99 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 99 (250)
...+.++.+.|++. +++++ ..|.+.. +|- .++.-.....+ ....++++.+.+ +++.++
T Consensus 172 ~g~~~~i~~~~~g~-~v~~g-~~G~i~~s~~~-gg~tW~~~~~~------------~~~~l~~i~~~~------~g~~~~ 230 (334)
T PRK13684 172 AGVVRNLRRSPDGK-YVAVS-SRGNFYSTWEP-GQTAWTPHQRN------------SSRRLQSMGFQP------DGNLWM 230 (334)
T ss_pred cceEEEEEECCCCe-EEEEe-CCceEEEEcCC-CCCeEEEeeCC------------CcccceeeeEcC------CCCEEE
Confidence 35678899999876 55444 4455432 221 12211112211 235678888887 777766
Q ss_pred EEeCCCeEEEEeCCCceeEeeccCC---CCCCccceeecccceeEEEeeee---ee-cc-CeeeeeeccccCccccEEEE
Q 025649 100 VAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNIRDAEMEIL---DQ-SG-GKRLHLDYSVGGHTAAASCV 171 (250)
Q Consensus 100 ~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~-~~-~~~~~~~~~~~~h~~~v~~~ 171 (250)
++ ..|.+.+=....+..-.....+ ....+..+.+.+++..++. +.. -. .+ ...-+.+.....-....+.+
T Consensus 231 vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~ 308 (334)
T PRK13684 231 LA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKI 308 (334)
T ss_pred Ee-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEEeCCCCCCCeECCcCCCCCcceEEE
Confidence 65 4576654334444322221111 1234667788888776652 211 11 11 11111111111112356777
Q ss_pred EeecCCCCCcEEEEeeCCCeEEEEe
Q 025649 172 AFSMFGERGKYLISGGNDKLVKVWD 196 (250)
Q Consensus 172 ~~~p~~~~~~~l~s~~~d~~i~iwd 196 (250)
.|. .+++.+++| ..|.|--|+
T Consensus 309 ~~~---~~~~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 309 VFL---DPEKGFVLG-QRGVLLRYV 329 (334)
T ss_pred EEe---CCCceEEEC-CCceEEEec
Confidence 777 556666655 467777665
No 455
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=86.80 E-value=21 Score=31.33 Aligned_cols=82 Identities=15% Similarity=0.124 Sum_probs=46.6
Q ss_pred EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC----------CC
Q 025649 36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----------DG 105 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~----------d~ 105 (250)
.++.++.|+.|.-.|.++|+.+..+....... -.......+..-..+.-.|.. .+..+++|+. +|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vd-l~~~~g~~~~g~~~~ts~P~V----~~g~VIvG~~v~d~~~~~~~~G 336 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVD-LTAGMGTTPPGYYYPTSPPLV----AGTTVVIGGRVADNYSTDEPSG 336 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCcee-eecccCcCCCcccccccCCEE----ECCEEEEEecccccccccCCCc
Confidence 67788899999999999999887764221000 000000001111112222221 2345555532 68
Q ss_pred eEEEEeCCCceeEeecc
Q 025649 106 VVDVINIESELNISRSK 122 (250)
Q Consensus 106 ~i~~~d~~~~~~~~~~~ 122 (250)
.|+-+|.++|+......
T Consensus 337 ~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 337 VIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEEEEECCCCcEeeEEe
Confidence 89999999999886654
No 456
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.78 E-value=13 Score=29.94 Aligned_cols=171 Identities=13% Similarity=0.051 Sum_probs=86.3
Q ss_pred eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc-cceecCCCCCCCCCCcccCCCcee-EEecCCCc
Q 025649 12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN-KIVNFGLPENNGNAGQCYNPAFVH-AIAIPDAD 89 (250)
Q Consensus 12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~ 89 (250)
.+..+. .-...|..+-..|||+ .|..-+. .++.++++.+.... +.+.... . +. ....|+ .+..-.
T Consensus 212 ~i~~L~-~~~~~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~ds---p---g~--~~~~Vte~l~lL~-- 278 (733)
T COG4590 212 IIRLLS-VPFSDVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDS---P---GD--SRHQVTEQLYLLS-- 278 (733)
T ss_pred hhhhcC-CCccchHhhEECCCCC-EEEEecC-CeEEEEeecccccchhhhhhcC---C---Cc--hHHHHHHHHHHHh--
Confidence 333455 5567788899999999 4544443 57888888654321 1111010 0 00 001122 111111
Q ss_pred ccCCCCCEEEEEeCCCeEEEE-eCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccE
Q 025649 90 MLDKTNKICVVAKGDGVVDVI-NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA 168 (250)
Q Consensus 90 ~~~~~~~~l~~~~~d~~i~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 168 (250)
.+.-+.+++.||.|.-| |.+.+-.. ....++.++-...++
T Consensus 279 ----Gg~SLLv~~~dG~vsQWFdvr~~~~p-----------------------------------~l~h~R~f~l~pa~~ 319 (733)
T COG4590 279 ----GGFSLLVVHEDGLVSQWFDVRRDGQP-----------------------------------HLNHIRNFKLAPAEV 319 (733)
T ss_pred ----CceeEEEEcCCCceeeeeeeecCCCC-----------------------------------cceeeeccccCcccc
Confidence 57778888899988766 55532110 011112222222333
Q ss_pred EEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 169 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 169 ~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
..+.-- .+.+-+++-+..|++.++..... +.+ ....--+.+.-++++| .+.++++-. .|+|+++.
T Consensus 320 ~~l~pe---~~rkgF~~l~~~G~L~~f~st~~---------~~l-L~~~~~~~~~~~~~Sp-~~~~Ll~e~-~gki~~~~ 384 (733)
T COG4590 320 QFLLPE---TNRKGFYSLYRNGTLQSFYSTSE---------KLL-LFERAYQAPQLVAMSP-NQAYLLSED-QGKIRLAQ 384 (733)
T ss_pred eeeccc---cccceEEEEcCCCceeeeecccC---------cce-ehhhhhcCcceeeeCc-ccchheeec-CCceEEEE
Confidence 333322 23455666677777777765553 111 1111222444567777 666666544 56677776
Q ss_pred C
Q 025649 249 I 249 (250)
Q Consensus 249 ~ 249 (250)
+
T Consensus 385 l 385 (733)
T COG4590 385 L 385 (733)
T ss_pred e
Confidence 5
No 457
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.90 E-value=7.6 Score=25.41 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=46.9
Q ss_pred eEEEcCCCCeEEEEecCCCeEEEEEccCC--------CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCE
Q 025649 26 SVQFIPWKPWEVISGGLDSKLVMWDFSKG--------RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI 97 (250)
Q Consensus 26 ~l~~~~~~~~~l~s~s~dg~v~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (250)
.-.|....+ .|+.++.-|.|.|++.... ..+..++. ...|++++-.++.- +.....
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--------------n~~italaaG~l~~-~~~~D~ 66 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--------------NQEITALAAGRLKP-DDGRDC 66 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEEC--------------CCceEEEEEEecCC-CCCcCE
Confidence 445677777 7888888999999987633 23334442 35677765544211 124556
Q ss_pred EEEEeCCCeEEEEeCCCce
Q 025649 98 CVVAKGDGVVDVINIESEL 116 (250)
Q Consensus 98 l~~~~~d~~i~~~d~~~~~ 116 (250)
|+.|+. ..+..||+....
T Consensus 67 LliGt~-t~llaYDV~~N~ 84 (136)
T PF14781_consen 67 LLIGTQ-TSLLAYDVENNS 84 (136)
T ss_pred EEEecc-ceEEEEEcccCc
Confidence 666654 679999998654
No 458
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.37 E-value=0.14 Score=40.60 Aligned_cols=141 Identities=14% Similarity=0.211 Sum_probs=87.3
Q ss_pred eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE-EEEeC
Q 025649 25 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKG 103 (250)
Q Consensus 25 ~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l-~~~~~ 103 (250)
-...|-|.+. -++.++.+..|..||-. ++...... .+.....++|.- ++..+ +.+-.
T Consensus 38 i~~~w~~e~~-nlavaca~tiv~~YD~a-gq~~le~n--------------~tg~aldm~wDk------egdvlavlAek 95 (615)
T KOG2247|consen 38 IIHRWRPEGH-NLAVACANTIVIYYDKA-GQVILELN--------------PTGKALDMAWDK------EGDVLAVLAEK 95 (615)
T ss_pred ceeeEecCCC-ceehhhhhhHHHhhhhh-cceecccC--------------CchhHhhhhhcc------ccchhhhhhhc
Confidence 3556788887 47777788888888864 33333332 134445566654 55444 45567
Q ss_pred CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeecccc-CccccEEEEEeecCCCCCcE
Q 025649 104 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG-GHTAAASCVAFSMFGERGKY 182 (250)
Q Consensus 104 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~ 182 (250)
.+.+.+||+.+...... .+. .|.... +.|+ +.+..
T Consensus 96 ~~piylwd~n~eytqqL---------------------------------------E~gg~~s~sl--l~ws---Kg~~e 131 (615)
T KOG2247|consen 96 TGPIYLWDVNSEYTQQL---------------------------------------ESGGTSSKSL--LAWS---KGTPE 131 (615)
T ss_pred CCCeeechhhhhhHHHH---------------------------------------hccCcchHHH--Hhhc---cCCcc
Confidence 88999999986331110 001 112211 5667 67777
Q ss_pred EEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCc
Q 025649 183 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK 242 (250)
Q Consensus 183 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 242 (250)
++.+-..|.+.|++..+. ........|..++.++++.+.| +.+.++.|.
T Consensus 132 l~ig~~~gn~viynhgts---------R~iiv~Gkh~RRgtq~av~lEd--~vil~dcd~ 180 (615)
T KOG2247|consen 132 LVIGNNAGNIVIYNHGTS---------RRIIVMGKHQRRGTQIAVTLED--YVILCDCDN 180 (615)
T ss_pred ccccccccceEEEeccch---------hhhhhhcccccceeEEEecccc--eeeecCcHH
Confidence 888888899999998885 4434444488889999998743 455555443
No 459
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.45 E-value=29 Score=31.59 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=26.3
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFS 52 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~ 52 (250)
......++|+|.-. +++.+...|.|+++-..
T Consensus 35 ~~~~~~~afD~~q~-llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 35 PSTPSALAFDPTQG-LLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCCcceeeccccc-eEEEEEecccEEEeccc
Confidence 34567889999988 99999999999999764
No 460
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.36 E-value=3.9 Score=34.11 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=22.4
Q ss_pred CCcEEEEeeCCCeEEEEecCCCcce
Q 025649 179 RGKYLISGGNDKLVKVWDCSRFQGV 203 (250)
Q Consensus 179 ~~~~l~s~~~d~~i~iwd~~~~~~~ 203 (250)
+..++++-+.|+++|+||+.++++.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEE
Confidence 5679999999999999999999773
No 461
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=82.43 E-value=1.2 Score=37.06 Aligned_cols=91 Identities=12% Similarity=0.151 Sum_probs=52.5
Q ss_pred EEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC-eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeE
Q 025649 4 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS-KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA 82 (250)
Q Consensus 4 iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (250)
+=|..+...+..|+ .|..++..++|.+.+. ++++++-.| .|.++.+ .+.+.+.....+.... .........+..
T Consensus 299 vkdf~S~a~i~Qfk-AhkspiSaLcfdqsgs-llViasi~g~nVnvfRi--met~~t~~~~~qs~~~-s~ra~t~aviqd 373 (788)
T KOG2109|consen 299 VKDFDSFADIRQFK-AHKSPISALCFDQSGS-LLVIASITGRNVNVFRI--METVCTVNVSDQSLVV-SPRANTAAVIQD 373 (788)
T ss_pred eecccchhhhhhee-eecCcccccccccCce-EEEEEeeccceeeeEEe--cccccccccccccccc-chhcchHHHHHH
Confidence 34556667778899 9999999999999999 888887765 3444443 3332222211100000 011122334445
Q ss_pred EecCCCcccCCCCCEEEEEeCCC
Q 025649 83 IAIPDADMLDKTNKICVVAKGDG 105 (250)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~d~ 105 (250)
++|+. ..+++..++.+|
T Consensus 374 icfs~------~s~~r~~gsc~G 390 (788)
T KOG2109|consen 374 ICFSE------VSTIRTAGSCEG 390 (788)
T ss_pred Hhhhh------hcceEeecccCC
Confidence 55665 566677766555
No 462
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=81.24 E-value=5.7 Score=34.04 Aligned_cols=36 Identities=14% Similarity=0.315 Sum_probs=29.8
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP 56 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~ 56 (250)
....++++.-+|.++ -++.++.||.|++|+....+.
T Consensus 13 ~~e~~~aiqshp~~~-s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQ-SFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred ccceeeeeeecCCCc-eEEEEecCCcEEEEeecccch
Confidence 445678888899998 799999999999999865444
No 463
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=81.20 E-value=23 Score=27.38 Aligned_cols=112 Identities=10% Similarity=-0.014 Sum_probs=65.7
Q ss_pred CeeeEEEcCCCCeEEEEecCC------CeEEEEEccCCCCccceecCCCCCCCC--CCcccCCCceeEEecCCCcccCCC
Q 025649 23 ICSSVQFIPWKPWEVISGGLD------SKLVMWDFSKGRPNKIVNFGLPENNGN--AGQCYNPAFVHAIAIPDADMLDKT 94 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~ 94 (250)
...+|++.+++. ++++.-.+ ..|..++.. |+.+..+..+..-.... ...........+++++| +
T Consensus 86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~------d 157 (326)
T PF13449_consen 86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP------D 157 (326)
T ss_pred ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC------C
Confidence 455888877887 78877777 889888876 77766664331110000 02233456788999998 8
Q ss_pred CCEEEEEeC-----CC--e-------EEE--EeCCC-ceeE----eeccCC----CCCCccceeecccceeEE
Q 025649 95 NKICVVAKG-----DG--V-------VDV--INIES-ELNI----SRSKST----TKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 95 ~~~l~~~~~-----d~--~-------i~~--~d~~~-~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~ 142 (250)
++.|.++.+ |+ . +++ ||..+ +... ...... ....+..+..-+++++++
T Consensus 158 G~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 158 GRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred CCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 886666643 22 1 444 44443 2111 111110 235677777778887666
No 464
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=80.86 E-value=26 Score=27.75 Aligned_cols=122 Identities=13% Similarity=-0.007 Sum_probs=61.0
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC---CCe-EEEEEccC-CCCccceecCCCCCCCCCCcccC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DSK-LVMWDFSK-GRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~-v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
|.-.|+.+|+....+. -+..+..+.|+|..+.+|+-|-. +.. -|||-+++ +...+.+.... .
T Consensus 170 i~~idl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-----------~ 236 (386)
T PF14583_consen 170 IFTIDLKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-----------E 236 (386)
T ss_dssp EEEEETTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------------T
T ss_pred EEEEECCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-----------C
Confidence 3456788888765555 66788999999998866666533 322 36777654 33333332110 0
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEe-----CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAK-----GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 145 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (250)
...+.-=-|.| +|..|.--+ .+..|.-+|+.++........ ......-.++||++++-.|
T Consensus 237 ~e~~gHEfw~~------DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~---p~~~H~~ss~Dg~L~vGDG 301 (386)
T PF14583_consen 237 GESVGHEFWVP------DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM---PWCSHFMSSPDGKLFVGDG 301 (386)
T ss_dssp TEEEEEEEE-T------TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE
T ss_pred CcccccccccC------CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC---CceeeeEEcCCCCEEEecC
Confidence 12233344565 777664432 355677788888654332222 2345666778998887433
No 465
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=80.37 E-value=23 Score=26.87 Aligned_cols=123 Identities=17% Similarity=0.067 Sum_probs=68.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeEeeccC-CCCCCccceeecccceeEEE----eeeeeeccCeeeeeeccccCccccEE
Q 025649 95 NKICVVAKGDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDAE----MEILDQSGGKRLHLDYSVGGHTAAAS 169 (250)
Q Consensus 95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~v~ 169 (250)
++++..+..+.-+++.|+.+...+..... .......++..+-+-.+++. .-..|..+....+...++........
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~ 175 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTH 175 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCce
Confidence 56777888888899999988554433222 22233344444433333331 11223333333333344444444445
Q ss_pred EEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649 170 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 229 (250)
Q Consensus 170 ~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 229 (250)
.++.| |++...+..|+-+.+-|+..... +.+......+..+.++..++
T Consensus 176 ~v~IS-----Gn~AYvA~~d~GL~ivDVSnp~s-------Pvli~~~n~g~g~~sv~vsd 223 (370)
T COG5276 176 DVAIS-----GNYAYVAWRDGGLTIVDVSNPHS-------PVLIGSYNTGPGTYSVSVSD 223 (370)
T ss_pred eEEEe-----cCeEEEEEeCCCeEEEEccCCCC-------CeEEEEEecCCceEEEEecC
Confidence 66766 67777888899999999988643 22222333334667776654
No 466
>PRK10115 protease 2; Provisional
Probab=79.24 E-value=42 Score=29.19 Aligned_cols=99 Identities=5% Similarity=-0.096 Sum_probs=55.0
Q ss_pred CeeeEEEcCCCCeEEEEecCC----CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 23 ICSSVQFIPWKPWEVISGGLD----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
.+..+.++|+++.+.++.+.+ ..|++-|+.+++.+.....+ .-..++|.+ +++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---------------~~~~~~w~~------D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---------------VEPSFVWAN------DSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---------------cceEEEEee------CCCEE
Confidence 467788999999433343333 35888899877643222101 114588887 77766
Q ss_pred EEEeCC------CeEEEEeCCCce--eEeeccCCCCCCccceeecccceeEE
Q 025649 99 VVAKGD------GVVDVINIESEL--NISRSKSTTKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 99 ~~~~~d------~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (250)
+....+ ..|..+++.++. ..................+.++++++
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~ 238 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVV 238 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEE
Confidence 555332 367888888762 22222222111212334455777766
No 467
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=78.25 E-value=12 Score=22.51 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=24.3
Q ss_pred eeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649 186 GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 239 (250)
Q Consensus 186 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 239 (250)
+..+|.+.-||..+++. ..+..--...+.++.++ |+++++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~----------~vl~~~L~fpNGVals~-d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKET----------TVLLDGLYFPNGVALSP-DESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEE----------EEEEEEESSEEEEEE-T-TSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeE----------EEehhCCCccCeEEEcC-CCCEEEEEe
Confidence 34567888889888632 22222223577888987 788665543
No 468
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=77.91 E-value=31 Score=26.85 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=8.2
Q ss_pred CCCeEEEeeCC
Q 025649 231 ESENLVVCDTS 241 (250)
Q Consensus 231 ~~~~l~s~~~d 241 (250)
++++++.|+.+
T Consensus 321 ~~~iyv~GG~~ 331 (346)
T TIGR03547 321 NNGVLLIGGEN 331 (346)
T ss_pred CCEEEEEeccC
Confidence 67788888765
No 469
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=77.87 E-value=34 Score=27.40 Aligned_cols=106 Identities=15% Similarity=0.098 Sum_probs=55.2
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce-----eEeeccCC-CCCCccceeecccceeEEEeeeee--
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL-----NISRSKST-TKPLKGSQSTSKVNIRDAEMEILD-- 148 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-- 148 (250)
...+.++.+.+ ++..++++ .+|.+.. ....++ ........ ....+..+.+.+++..++ +|..-
T Consensus 280 ~~~l~~v~~~~------dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v 350 (398)
T PLN00033 280 ARRIQNMGWRA------DGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGIL 350 (398)
T ss_pred ccceeeeeEcC------CCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEE-EECCCcE
Confidence 45678888887 77777766 5565443 333332 11222211 223577788888877776 32211
Q ss_pred -ec--cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEE
Q 025649 149 -QS--GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195 (250)
Q Consensus 149 -~~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iw 195 (250)
.. ..+.-+....-..-....+.+.|. ++++.+++| .+|.|.-|
T Consensus 351 ~~s~D~G~tW~~~~~~~~~~~~ly~v~f~---~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 351 LRSTDGGKSWKRDKGADNIAANLYSVKFF---DDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred EEeCCCCcceeEccccCCCCcceeEEEEc---CCCceEEEe-CCcEEEEe
Confidence 11 112212111112223467889987 566666665 46776544
No 470
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=77.72 E-value=28 Score=26.58 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=49.1
Q ss_pred ecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe
Q 025649 40 GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 119 (250)
Q Consensus 40 ~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 119 (250)
|..-|.|-++|+. |..++++..+. .-..-+.|+..|..|=...+.+|+-=-.||+|..||..+++.+-
T Consensus 218 G~G~G~VdvFd~~-G~l~~r~as~g-----------~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g 285 (336)
T TIGR03118 218 GAGLGYVNVFTLN-GQLLRRVASSG-----------RLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLG 285 (336)
T ss_pred CCCcceEEEEcCC-CcEEEEeccCC-----------cccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceee
Confidence 4445789999984 77777775331 12234677777755544567788777889999999999877654
Q ss_pred eccC
Q 025649 120 RSKS 123 (250)
Q Consensus 120 ~~~~ 123 (250)
.+..
T Consensus 286 ~L~~ 289 (336)
T TIGR03118 286 QLLD 289 (336)
T ss_pred eecC
Confidence 4433
No 471
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=77.14 E-value=18 Score=23.77 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=43.0
Q ss_pred CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCC----CCCeEEEeeCCceEEEEeC
Q 025649 178 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT----ESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 178 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~d~~i~vw~~ 249 (250)
....-|++++.-|+|.|++........... ..-..+..-...|++++.-+- +.+.|+.|+ ...+..||+
T Consensus 8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~--~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 8 GVHPCLACATTGGKVFIHNPHERGQRTGRQ--DSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred CCceeEEEEecCCEEEEECCCccccccccc--cCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 445578888888999999887653321111 111245566778888865542 344566666 556888986
No 472
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=75.41 E-value=6.2 Score=17.60 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=16.4
Q ss_pred EEEEEeecCCCCCcEEEEeeCCCeEEEE
Q 025649 168 ASCVAFSMFGERGKYLISGGNDKLVKVW 195 (250)
Q Consensus 168 v~~~~~~p~~~~~~~l~s~~~d~~i~iw 195 (250)
...++.+ ++|+++++-+...+|++|
T Consensus 4 P~gvav~---~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVD---SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEE---TTSEEEEEECCCTEEEEE
T ss_pred CcEEEEe---CCCCEEEEECCCCEEEEC
Confidence 4566776 677777776666666654
No 473
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=75.31 E-value=36 Score=26.35 Aligned_cols=90 Identities=12% Similarity=0.052 Sum_probs=46.2
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCe------EEEEEccC-CCCccceecCCC-CCCCCCCccc--CCCceeEEecCCCcc
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSK------LVMWDFSK-GRPNKIVNFGLP-ENNGNAGQCY--NPAFVHAIAIPDADM 90 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~------v~iwd~~~-~~~~~~~~~~~~-~~~~~~~~~~--~~~~v~~~~~~~~~~ 90 (250)
-+.+..|.+.+++. .+++.+++|. +...++.. ......+..... ......+..+ ......++++.+
T Consensus 19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~--- 94 (326)
T PF13449_consen 19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP--- 94 (326)
T ss_pred cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec---
Confidence 46788999997665 5777777777 55555543 111111110000 0000000000 111334566644
Q ss_pred cCCCCCEEEEEeCC------CeEEEEeCCCceeE
Q 025649 91 LDKTNKICVVAKGD------GVVDVINIESELNI 118 (250)
Q Consensus 91 ~~~~~~~l~~~~~d------~~i~~~d~~~~~~~ 118 (250)
++.++++.-.+ ..|..++.. |+..
T Consensus 95 ---~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~ 124 (326)
T PF13449_consen 95 ---DGSFWISSEGGRTGGIPPRIRRFDLD-GRVI 124 (326)
T ss_pred ---CCCEEEEeCCccCCCCCCEEEEECCC-Cccc
Confidence 77777777777 778888866 4443
No 474
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=74.82 E-value=6.5 Score=17.60 Aligned_cols=25 Identities=8% Similarity=-0.120 Sum_probs=18.9
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEE
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWD 50 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd 50 (250)
.|.+++..+. .++.+...+.+|+|.
T Consensus 3 ~i~aia~g~~---~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDS---WVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCC---EEEEEeCCCeEEecC
Confidence 5677776654 788888888999873
No 475
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=74.52 E-value=48 Score=27.38 Aligned_cols=77 Identities=19% Similarity=0.116 Sum_probs=34.6
Q ss_pred EEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEE
Q 025649 4 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI 83 (250)
Q Consensus 4 iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 83 (250)
+.|. .|.+...+. ........+...++|. +++..+ ..++.+|+. |+.+....++... .. .=+.+
T Consensus 132 ~iD~-~G~Vrw~~~-~~~~~~~~~~~l~nG~-ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~------~~----~HHD~ 195 (477)
T PF05935_consen 132 LIDN-NGDVRWYLP-LDSGSDNSFKQLPNGN-LLIGSG--NRLYEIDLL-GKVIWEYDLPGGY------YD----FHHDI 195 (477)
T ss_dssp EEET-TS-EEEEE--GGGT--SSEEE-TTS--EEEEEB--TEEEEE-TT---EEEEEE--TTE------E-----B-S-E
T ss_pred EECC-CccEEEEEc-cCccccceeeEcCCCC-EEEecC--CceEEEcCC-CCEEEeeecCCcc------cc----ccccc
Confidence 3443 455555544 2222222267788887 554444 788888884 7766666544100 01 12456
Q ss_pred ecCCCcccCCCCCEEEEEe
Q 025649 84 AIPDADMLDKTNKICVVAK 102 (250)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~ 102 (250)
..-| +|++|+.+.
T Consensus 196 ~~l~------nGn~L~l~~ 208 (477)
T PF05935_consen 196 DELP------NGNLLILAS 208 (477)
T ss_dssp EE-T------TS-EEEEEE
T ss_pred EECC------CCCEEEEEe
Confidence 6666 899888887
No 476
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=74.17 E-value=16 Score=21.84 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=25.1
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccC
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 53 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~ 53 (250)
..-+.|.++|+++.+.++....+.|.+|....
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 44578999999985666777789999998653
No 477
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=73.99 E-value=45 Score=26.88 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=24.6
Q ss_pred cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC
Q 025649 165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 199 (250)
Q Consensus 165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~ 199 (250)
+..|.++... +..+.+++.+.+|.|.+||+..
T Consensus 189 ~~~I~~v~~d---~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVD---PSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEE---TTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEec---CCcCEEEEEeCCCcEEEEEEeC
Confidence 3459999998 6678999999999999999985
No 478
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.34 E-value=13 Score=32.06 Aligned_cols=33 Identities=6% Similarity=0.114 Sum_probs=27.8
Q ss_pred cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649 165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~ 200 (250)
...++++.-+ |.|+-++.++.||.|++|+.-..
T Consensus 14 ~e~~~aiqsh---p~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 14 DEFTTAIQSH---PGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred cceeeeeeec---CCCceEEEEecCCcEEEEeeccc
Confidence 3456778878 89999999999999999998764
No 479
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=73.14 E-value=66 Score=28.42 Aligned_cols=77 Identities=10% Similarity=0.038 Sum_probs=49.7
Q ss_pred cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc----cccceeeee------eccCCceeEEEecCCCCCe
Q 025649 165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS----INNDLLIKN------INLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~------~~~~~~v~~~~~~~~~~~~ 234 (250)
.+.|.++... .-+.+++..-.||+|.++|-.+.+..... .....+... ...-..+..++++| .+..
T Consensus 259 ~~~V~si~~~---~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~ 334 (753)
T PF11635_consen 259 NKRVVSITSP---ELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCS 334 (753)
T ss_pred CCeEEEEEec---ccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccce
Confidence 3568888876 56778999999999999999887555332 111111111 11222455688998 6666
Q ss_pred EEEeeCCceEE
Q 025649 235 LVVCDTSKVVK 245 (250)
Q Consensus 235 l~s~~~d~~i~ 245 (250)
++.-..+|.+.
T Consensus 335 ~v~~~~~~~~~ 345 (753)
T PF11635_consen 335 LVQIDEDGKTK 345 (753)
T ss_pred EEEEecCCCce
Confidence 77777777754
No 480
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=72.47 E-value=9.7 Score=18.54 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=14.1
Q ss_pred EEEEecCCCeEEEEEccC
Q 025649 36 EVISGGLDSKLVMWDFSK 53 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~ 53 (250)
.++.++.||.|..+|.++
T Consensus 23 ~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 23 RVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EEEEE-TTSEEEEEETT-
T ss_pred EEEEEcCCCEEEEEeCCC
Confidence 688889999999999763
No 481
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=71.91 E-value=38 Score=25.17 Aligned_cols=75 Identities=19% Similarity=0.146 Sum_probs=46.9
Q ss_pred CCCCeeeEEEcC------CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 20 HSSICSSVQFIP------WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 20 h~~~v~~l~~~~------~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
+...|+||+--+ +....|+.|..+|.|.|.|.+....+..++.+. -+. .+..+- .++.
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lps-----------vPv---~i~~~G--~~de 238 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPS-----------VPV---FISVSG--QYDE 238 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCC-----------Cce---EEEEEe--eeec
Confidence 456788887533 233489999999999999998777776666441 111 111110 1110
Q ss_pred CCCEEEEEeCCCeEEEE
Q 025649 94 TNKICVVAKGDGVVDVI 110 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~ 110 (250)
-..+|++++.||.|++.
T Consensus 239 vdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 239 VDYRIVVACRDGKIYTI 255 (257)
T ss_pred cceEEEEEeCCCEEEEE
Confidence 24567778899988764
No 482
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=70.91 E-value=43 Score=25.29 Aligned_cols=153 Identities=7% Similarity=-0.085 Sum_probs=88.9
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 102 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 102 (250)
.-..++-.|||. .-.++...+.|---|..+|+.. .+.++ .-..-+.+.+-| ++..-++-+
T Consensus 63 ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~-~ypLg------------~Ga~Phgiv~gp------dg~~Witd~ 122 (353)
T COG4257 63 APFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVE-TYPLG------------SGASPHGIVVGP------DGSAWITDT 122 (353)
T ss_pred CccccccCCCCc-eEEecCccccceecCCCCCceE-EEecC------------CCCCCceEEECC------CCCeeEecC
Confidence 445677778887 6777777777777777777643 22223 123345666676 777666654
Q ss_pred CCCeEEEEeCCCceeEe-ec-cCCCCCCccceeecccceeEEEee--eeeeccCeeeeeeccccC-ccccEEEEEeecCC
Q 025649 103 GDGVVDVINIESELNIS-RS-KSTTKPLKGSQSTSKVNIRDAEME--ILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFG 177 (250)
Q Consensus 103 ~d~~i~~~d~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~ 177 (250)
.. -|.-.|-++..... .+ ............|.+.|.+-++.. ..- .....-..+..+.. .....+.|+..
T Consensus 123 ~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yG-rLdPa~~~i~vfpaPqG~gpyGi~at--- 197 (353)
T COG4257 123 GL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYG-RLDPARNVISVFPAPQGGGPYGICAT--- 197 (353)
T ss_pred cc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccce-ecCcccCceeeeccCCCCCCcceEEC---
Confidence 43 55666665543221 11 222336678889999999888421 111 11111112223332 22344667777
Q ss_pred CCCcEEEEeeCCCeEEEEecCCC
Q 025649 178 ERGKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 178 ~~~~~l~s~~~d~~i~iwd~~~~ 200 (250)
|+|...++.-.+..|..-|...+
T Consensus 198 pdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 198 PDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred CCCcEEEEeccccceEEcccccC
Confidence 89988888777778888887776
No 483
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=69.27 E-value=39 Score=25.11 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=43.0
Q ss_pred ccccEEEEEeecCCCC----CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec-CC--CCCeEE
Q 025649 164 HTAAASCVAFSMFGER----GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT-PT--ESENLV 236 (250)
Q Consensus 164 h~~~v~~~~~~p~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~--~~~~l~ 236 (250)
+...|+|++--.-+.. -.-|+.|.++|.|.|.|.+.. ..+....-..-++ .++.. -- -.-.|+
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af---------~il~~~~lpsvPv-~i~~~G~~devdyRI~ 244 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAF---------TILKQVQLPSVPV-FISVSGQYDEVDYRIV 244 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhh---------eeEEEEecCCCce-EEEEEeeeeccceEEE
Confidence 3456788776421111 146888999999999999886 3333332222222 22111 11 122478
Q ss_pred EeeCCceEEEE
Q 025649 237 VCDTSKVVKVY 247 (250)
Q Consensus 237 s~~~d~~i~vw 247 (250)
.+++||.|++-
T Consensus 245 Va~Rdg~iy~i 255 (257)
T PF14779_consen 245 VACRDGKIYTI 255 (257)
T ss_pred EEeCCCEEEEE
Confidence 89999998764
No 484
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=69.19 E-value=15 Score=22.17 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=25.1
Q ss_pred ecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 40 GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 40 ~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
+..+|.+.-||..+++....+. + -...+.+++++ ++..++.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~-~-------------L~fpNGVals~------d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLD-G-------------LYFPNGVALSP------DESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEE-E-------------ESSEEEEEE-T------TSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehh-C-------------CCccCeEEEcC------CCCEEEEE
Confidence 3446888889988776433332 1 13457889998 88876665
No 485
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=68.76 E-value=70 Score=28.27 Aligned_cols=169 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred EcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc-----CCCCccceecCCCCCCCCCCcccCCCce
Q 025649 6 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-----KGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 6 d~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
|..+-....... .....+.++.+++. -+..|.-||++-.+--. .+++...+..+ ..++
T Consensus 567 ~s~ke~~~~~~s-pe~~~v~~l~~ss~---Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g-------------~lPv 629 (925)
T KOG3522|consen 567 DSIKEVTSEPPS-PEHESVKLLLFSSG---SLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTG-------------SLPV 629 (925)
T ss_pred CcccceeccCCC-Cchhhhhhhhcccc---ccccCccCCccccccCCCCCCCCCCCccccccC-------------Cccc
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeecc
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS 160 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (250)
.+.++.. + ++.++.+|.|.++...+.........+
T Consensus 630 rsla~~e------d---~~was~gG~V~vi~~tt~~~~~~leah------------------------------------ 664 (925)
T KOG3522|consen 630 RSLAFQE------D---FVWASEGGCVHVIPSTTFIRSWDLEAH------------------------------------ 664 (925)
T ss_pred cchhhhh------c---eeeeecCCceEEEechhccccchhHHH------------------------------------
Q ss_pred ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC--ceeEEEecCCCCCeEEEe
Q 025649 161 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK--KVNWLCTTPTESENLVVC 238 (250)
Q Consensus 161 ~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~ 238 (250)
..|...|+++.+. .+|-+++-.+.| .+++++..+....+................ .|....|+ ..++.++
T Consensus 665 -qee~~~Vthm~~~---~~gVwvafasG~-~~rlfhtetl~hlqd~niaT~vt~~lP~~kllsv~~rl~c---~gl~~V~ 736 (925)
T KOG3522|consen 665 -QEEAHSVTHMLYL---DNGVWVAFASGD-EERLFHTETLWHLQDSNIATSVTVDLPFGKLLSVPGRLWC---QGLLMVL 736 (925)
T ss_pred -HhhcceEEEEEee---CCceEEEEcCCC-EEEEecccccCCccccccCcceeecCCCcccccCCCcccc---cceeEEe
Q ss_pred eCCceE
Q 025649 239 DTSKVV 244 (250)
Q Consensus 239 ~~d~~i 244 (250)
+.++..
T Consensus 737 ~~~~l~ 742 (925)
T KOG3522|consen 737 TSLTLL 742 (925)
T ss_pred ccceeE
No 486
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=68.03 E-value=63 Score=26.14 Aligned_cols=60 Identities=8% Similarity=0.075 Sum_probs=37.9
Q ss_pred CeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCC
Q 025649 34 PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 113 (250)
Q Consensus 34 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~ 113 (250)
+.+++.-+.||.+.+++-+.-...+.+. + ...|+ .+.+.+ ....+++++.+..+..|...
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp-~----------~llPg---Pl~Y~~------~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLP-D----------FLLPG---PLCYCP------RTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcC-C----------CCCCc---CeEEee------cCCEEEEecCceeEEEecHH
Confidence 3488899999999999976433222221 0 11222 244555 66778888887888888653
No 487
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=67.94 E-value=51 Score=24.99 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=38.3
Q ss_pred ccccEEEEEeecCCCCCcEEEEee------CCCeEEEEecCCCcceecccccceeeeee-----ccCCceeEEEecCCCC
Q 025649 164 HTAAASCVAFSMFGERGKYLISGG------NDKLVKVWDCSRFQGVQTSINNDLLIKNI-----NLNKKVNWLCTTPTES 232 (250)
Q Consensus 164 h~~~v~~~~~~p~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~ 232 (250)
-.+.|+.+.|. .+.++++.|. ....+..||+.+.... .+. .-.++|..+.+...|+
T Consensus 35 i~G~V~~l~~~---~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~----------~~~~~~s~~ipgpv~a~~~~~~d~ 101 (281)
T PF12768_consen 35 ISGTVTDLQWA---SNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS----------SLGGGSSNSIPGPVTALTFISNDG 101 (281)
T ss_pred ceEEEEEEEEe---cCCEEEEEEeeEECCCCceeEEEEecCCCeee----------ecCCcccccCCCcEEEEEeeccCC
Confidence 35679999997 6667777764 4567889999886321 222 2246677776655455
Q ss_pred CeEE
Q 025649 233 ENLV 236 (250)
Q Consensus 233 ~~l~ 236 (250)
..+.
T Consensus 102 ~~~~ 105 (281)
T PF12768_consen 102 SNFW 105 (281)
T ss_pred ceEE
Confidence 4444
No 488
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=67.27 E-value=54 Score=25.08 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=37.3
Q ss_pred CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 179 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 179 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
++++|+.|.++|...+. ...... .+ ....+...|.++...+..+-+++.++....++++++
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~-------~~--~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L 72 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPG-------TL--EKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPL 72 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCC-------Ce--EEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEH
Confidence 33689999988855544 443200 12 223445678899888744444444666666999886
No 489
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=65.63 E-value=57 Score=24.76 Aligned_cols=59 Identities=12% Similarity=0.231 Sum_probs=39.7
Q ss_pred cEEEEcccceeeeeeccC-----CCCCeeeEEEcCCC-----CeEEEEecCCCeEEEEEccCCCCccce
Q 025649 2 WQIIDIRQHCLYKSLRAG-----HSSICSSVQFIPWK-----PWEVISGGLDSKLVMWDFSKGRPNKIV 60 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~-----h~~~v~~l~~~~~~-----~~~l~s~s~dg~v~iwd~~~~~~~~~~ 60 (250)
|.+||++++++++++... ..+.+..+.+.... ....++=+..+-|.++|+.+++.-+.+
T Consensus 36 Lv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~ 104 (287)
T PF03022_consen 36 LVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVL 104 (287)
T ss_dssp EEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEe
Confidence 568999999998887621 23567778876632 223445555678999999988764444
No 490
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=64.27 E-value=3.1 Score=33.53 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=56.2
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
.+.+||+.+... ..+..+.+..-.-+.|++..+ .++.+-..|.+.+++-.+.+.+...-. |...+
T Consensus 98 piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~Gk-------------h~RRg 162 (615)
T KOG2247|consen 98 PIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMGK-------------HQRRG 162 (615)
T ss_pred CeeechhhhhhH-HHHhccCcchHHHHhhccCCc-cccccccccceEEEeccchhhhhhhcc-------------cccce
Confidence 367888864332 333323333334488999888 788999999999999877665444321 46678
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEE
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDV 109 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 109 (250)
.++++.+ ..+.+.++.|..+.+
T Consensus 163 tq~av~l-------Ed~vil~dcd~~L~v 184 (615)
T KOG2247|consen 163 TQIAVTL-------EDYVILCDCDNTLSV 184 (615)
T ss_pred eEEEecc-------cceeeecCcHHHHHH
Confidence 8889887 345555555554443
No 491
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=64.11 E-value=1.8 Score=36.03 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=30.7
Q ss_pred eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC-eEEEEec
Q 025649 155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK-LVKVWDC 197 (250)
Q Consensus 155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~-~i~iwd~ 197 (250)
...+..++.|+.++..+.|. +.+..+++++..| .|.++.+
T Consensus 305 ~a~i~QfkAhkspiSaLcfd---qsgsllViasi~g~nVnvfRi 345 (788)
T KOG2109|consen 305 FADIRQFKAHKSPISALCFD---QSGSLLVIASITGRNVNVFRI 345 (788)
T ss_pred hhhhhheeeecCcccccccc---cCceEEEEEeeccceeeeEEe
Confidence 34456788999999999998 8999999998765 4555543
No 492
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=63.50 E-value=75 Score=25.34 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred CcEEEEcc-cceeeeeeccCCCCCe---------eeEEEcC-CCCeEEEEecCCCeEEEEEcc-------CCCCccceec
Q 025649 1 MWQIIDIR-QHCLYKSLRAGHSSIC---------SSVQFIP-WKPWEVISGGLDSKLVMWDFS-------KGRPNKIVNF 62 (250)
Q Consensus 1 ti~iwd~~-~~~~~~~l~~~h~~~v---------~~l~~~~-~~~~~l~s~s~dg~v~iwd~~-------~~~~~~~~~~ 62 (250)
+|++|.+. ....+..+. ....++ .|+--+| +|..+.+....+|.+..|.+. +++.++.|..
T Consensus 128 ~l~~f~id~~~g~L~~v~-~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 128 SLRLFRIDPDTGELTDVT-DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp EEEEEEEETTTTEEEE-C-BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred eEEEEEecCCCCcceEcC-CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Q ss_pred CCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE
Q 025649 63 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 63 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (250)
. ..+..+.... ....|..+-++.-|.-|+.+...
T Consensus 207 ~--------------sQ~EGCVVDD------e~g~LYvgEE~~GIW~y~Aep~~-------------------------- 240 (381)
T PF02333_consen 207 G--------------SQPEGCVVDD------ETGRLYVGEEDVGIWRYDAEPEG-------------------------- 240 (381)
T ss_dssp S--------------S-EEEEEEET------TTTEEEEEETTTEEEEEESSCCC--------------------------
T ss_pred C--------------CcceEEEEec------ccCCEEEecCccEEEEEecCCCC--------------------------
Q ss_pred EeeeeeeccCeeeeeeccccC--ccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecCC
Q 025649 143 EMEILDQSGGKRLHLDYSVGG--HTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSR 199 (250)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~ 199 (250)
....+.+....+ ....|..++.-.......||+..+. +++..+||.+.
T Consensus 241 ---------~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 241 ---------GNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp ----------S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred ---------CCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
No 493
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=62.04 E-value=1.3e+02 Score=27.60 Aligned_cols=99 Identities=12% Similarity=0.096 Sum_probs=50.0
Q ss_pred cEEEEcccceeeeeeccCCC---CCeeeEEEcCCCCe-EEEEecC-----------CCeEEEEEcc-CCCCccceecCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHS---SICSSVQFIPWKPW-EVISGGL-----------DSKLVMWDFS-KGRPNKIVNFGLP 65 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~---~~v~~l~~~~~~~~-~l~s~s~-----------dg~v~iwd~~-~~~~~~~~~~~~~ 65 (250)
|++.|..+++.+..+..+.. -.|..+.|+..... +++.|.. +|.++.|++- .|+.+.-+..-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T-- 932 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT-- 932 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc--
Confidence 67888888887777651111 24566667655432 3444332 2335555532 23322111100
Q ss_pred CCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEee
Q 025649 66 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 120 (250)
Q Consensus 66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 120 (250)
--+..+ .++.| -..++++|- ...+++||+...+.+..
T Consensus 933 ---------~~~~~v--~Ai~~------f~~~~Lagv-G~~l~~YdlG~K~lLRk 969 (1205)
T KOG1898|consen 933 ---------EIPGPV--GAICP------FQGRVLAGV-GRFLRLYDLGKKKLLRK 969 (1205)
T ss_pred ---------CCCccc--eEEec------cCCEEEEec-ccEEEEeeCChHHHHhh
Confidence 011223 34445 344555553 46899999987665443
No 494
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=61.50 E-value=75 Score=24.70 Aligned_cols=26 Identities=15% Similarity=0.265 Sum_probs=20.4
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeC
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 112 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~ 112 (250)
-++|+|.| +++++++ ...|.|++++.
T Consensus 4 P~~~a~~p------dG~l~v~-e~~G~i~~~~~ 29 (331)
T PF07995_consen 4 PRSMAFLP------DGRLLVA-ERSGRIWVVDK 29 (331)
T ss_dssp EEEEEEET------TSCEEEE-ETTTEEEEEET
T ss_pred ceEEEEeC------CCcEEEE-eCCceEEEEeC
Confidence 46888988 8776665 56999999993
No 495
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=60.93 E-value=45 Score=21.99 Aligned_cols=76 Identities=11% Similarity=0.043 Sum_probs=47.5
Q ss_pred EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCC-cccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC
Q 025649 36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAG-QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 114 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 114 (250)
+.+....||.|.+++..+++.+..+..+......... .......+.. ... +.-+-++-..||.+.+-|..+
T Consensus 43 l~f~d~~~G~v~V~~~~~G~~va~~~~g~~GFvrgvlR~l~R~R~~~g--v~~------~~Pf~L~r~~dGrltL~Dp~T 114 (135)
T TIGR03054 43 LVFEDRPDGAVAVVETPDGRLVAILEPGQNGFVRVMLRGLARARARAG--VAA------EPPFRLTRYDNGRLTLTDPAT 114 (135)
T ss_pred EEEecCCCCeEEEEECCCCCEEEEecCCCCchhhHhHHHHHHHHHHcC--CCC------CCCEEEEEEeCCcEEEEcCCC
Confidence 5667788999999999999999888755110000000 0000001112 222 566788889999999999998
Q ss_pred ceeEe
Q 025649 115 ELNIS 119 (250)
Q Consensus 115 ~~~~~ 119 (250)
+..+.
T Consensus 115 g~~i~ 119 (135)
T TIGR03054 115 GWSIE 119 (135)
T ss_pred CcEEE
Confidence 87554
No 496
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=60.80 E-value=83 Score=24.94 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=26.5
Q ss_pred eeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649 186 GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 239 (250)
Q Consensus 186 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 239 (250)
+..+|++.-||..+.. ...+..--.-.+.++.+| |+.+++.+-
T Consensus 195 g~~~GRl~~YD~~tK~----------~~VLld~L~F~NGlaLS~-d~sfvl~~E 237 (376)
T KOG1520|consen 195 GDPTGRLFRYDPSTKV----------TKVLLDGLYFPNGLALSP-DGSFVLVAE 237 (376)
T ss_pred CCCccceEEecCcccc----------hhhhhhcccccccccCCC-CCCEEEEEe
Confidence 4457888888888742 222333334466778887 777766643
No 497
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=60.70 E-value=61 Score=23.41 Aligned_cols=97 Identities=7% Similarity=-0.091 Sum_probs=50.2
Q ss_pred EEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEe
Q 025649 5 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA 84 (250)
Q Consensus 5 wd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 84 (250)
+|..+-+++..+. ..+.=..++ .|++ .|+.++...+++.-|.++.....+++...... .-..++.+.
T Consensus 116 ~d~~t~~~lg~~~--y~GeGWgLt--~d~~-~LimsdGsatL~frdP~tfa~~~~v~VT~~g~--------pv~~LNELE 182 (262)
T COG3823 116 YDADTLEELGRFS--YEGEGWGLT--SDDK-NLIMSDGSATLQFRDPKTFAELDTVQVTDDGV--------PVSKLNELE 182 (262)
T ss_pred EChHHhhhhcccc--cCCcceeee--cCCc-ceEeeCCceEEEecCHHHhhhcceEEEEECCe--------eccccccee
Confidence 4444555555554 223323333 4555 35555556688888887766555544220000 011233344
Q ss_pred cCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec
Q 025649 85 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 121 (250)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 121 (250)
|- +|...|-.=.+..|...|.++|+....+
T Consensus 183 ~V-------dG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 183 WV-------DGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred ee-------ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 43 5666666656666777777777655443
No 498
>PLN02153 epithiospecifier protein
Probab=56.53 E-value=93 Score=24.19 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=13.5
Q ss_pred CCeEEEEecCC-----CeEEEEEccCCC
Q 025649 33 KPWEVISGGLD-----SKLVMWDFSKGR 55 (250)
Q Consensus 33 ~~~~l~s~s~d-----g~v~iwd~~~~~ 55 (250)
+. +++.|+.+ ..+.+||+.+.+
T Consensus 86 ~~-iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 86 TK-LYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CE-EEEECCCCCCCccCcEEEEECCCCE
Confidence 44 66777653 246778876543
No 499
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=56.48 E-value=1e+02 Score=24.77 Aligned_cols=140 Identities=6% Similarity=-0.117 Sum_probs=65.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee--eee-ccC-eeee--eecccc--Ccc
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI--LDQ-SGG-KRLH--LDYSVG--GHT 165 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~-~~~~--~~~~~~--~h~ 165 (250)
++.+++.+..-..++-||--... -..........+..+.+.+++..++.... ... .+. ...+ ...... .-.
T Consensus 249 dG~~~~vg~~G~~~~s~d~G~~~-W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~ 327 (398)
T PLN00033 249 DGDYVAVSSRGNFYLTWEPGQPY-WQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRG 327 (398)
T ss_pred CCCEEEEECCccEEEecCCCCcc-eEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCC
Confidence 56666665443333333332111 01222333456788888888888763211 111 111 1000 111111 122
Q ss_pred ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649 166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 245 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 245 (250)
..+..+.|. +++..+++| ..|.+.... ..++.- ........-....+.+.|.+ +++. ...+.+|.|.
T Consensus 328 ~~l~~v~~~---~d~~~~a~G-~~G~v~~s~-D~G~tW------~~~~~~~~~~~~ly~v~f~~-~~~g-~~~G~~G~il 394 (398)
T PLN00033 328 FGILDVGYR---SKKEAWAAG-GSGILLRST-DGGKSW------KRDKGADNIAANLYSVKFFD-DKKG-FVLGNDGVLL 394 (398)
T ss_pred cceEEEEEc---CCCcEEEEE-CCCcEEEeC-CCCcce------eEccccCCCCcceeEEEEcC-CCce-EEEeCCcEEE
Confidence 358889888 676666555 567666654 232111 01000122234677887765 4544 4455588776
Q ss_pred EE
Q 025649 246 VY 247 (250)
Q Consensus 246 vw 247 (250)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 54
No 500
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=55.00 E-value=1e+02 Score=25.23 Aligned_cols=36 Identities=14% Similarity=0.001 Sum_probs=25.1
Q ss_pred ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649 161 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 161 ~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~ 200 (250)
+..-...+..+-.. |+|+.+..-+. ..+.++++.+.
T Consensus 216 L~~~~~~v~qllL~---Pdg~~LYv~~g-~~~~v~~L~~r 251 (733)
T COG4590 216 LSVPFSDVSQLLLT---PDGKTLYVRTG-SELVVALLDKR 251 (733)
T ss_pred cCCCccchHhhEEC---CCCCEEEEecC-CeEEEEeeccc
Confidence 44444567777778 89987766554 67888888764
Done!