Query 025649
Match_columns 250
No_of_seqs 435 out of 1391
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 14:39:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gqb_B Methylosome protein 50; 100.0 2E-40 6.9E-45 251.8 24.6 216 1-250 104-330 (344)
2 3ow8_A WD repeat-containing pr 100.0 9.4E-40 3.2E-44 246.3 27.3 214 1-250 103-320 (321)
3 1vyh_C Platelet-activating fac 100.0 3.9E-39 1.3E-43 250.7 25.9 217 1-250 131-368 (410)
4 3ow8_A WD repeat-containing pr 100.0 7.9E-39 2.7E-43 241.2 25.3 214 1-250 59-278 (321)
5 2ynn_A Coatomer subunit beta'; 100.0 9.9E-39 3.4E-43 239.1 25.6 217 1-250 36-258 (304)
6 1vyh_C Platelet-activating fac 100.0 7.7E-39 2.6E-43 249.0 25.8 214 1-250 173-410 (410)
7 4g56_B MGC81050 protein; prote 100.0 1.2E-38 4E-43 243.6 22.9 216 1-250 116-342 (357)
8 1erj_A Transcriptional repress 100.0 3.8E-37 1.3E-41 238.3 27.9 216 1-249 146-387 (393)
9 2ynn_A Coatomer subunit beta'; 100.0 1.2E-36 4E-41 227.8 25.4 216 1-249 78-300 (304)
10 4h5i_A Guanine nucleotide-exch 100.0 1.4E-36 4.9E-41 232.7 26.0 215 1-250 105-342 (365)
11 3frx_A Guanine nucleotide-bind 100.0 3.5E-36 1.2E-40 226.7 26.4 221 1-249 41-315 (319)
12 1got_B GT-beta; complex (GTP-b 100.0 1.2E-35 4.2E-40 225.7 28.0 209 1-248 120-340 (340)
13 3bg1_A Protein SEC13 homolog; 100.0 6.2E-36 2.1E-40 225.1 25.5 221 1-249 36-291 (316)
14 2pm7_B Protein transport prote 100.0 2.2E-35 7.7E-40 220.2 28.0 220 1-249 32-283 (297)
15 4gqb_B Methylosome protein 50; 100.0 3.6E-36 1.2E-40 228.5 23.4 203 19-250 80-288 (344)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.4E-36 2.9E-40 227.0 25.5 209 9-249 4-223 (345)
17 1nr0_A Actin interacting prote 100.0 8.7E-36 3E-40 242.7 25.2 212 1-250 40-269 (611)
18 1erj_A Transcriptional repress 100.0 2.2E-35 7.4E-40 228.5 26.2 223 1-250 86-340 (393)
19 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.6E-35 1.6E-39 222.9 27.5 229 1-250 84-334 (345)
20 1got_B GT-beta; complex (GTP-b 100.0 3E-35 1E-39 223.5 26.4 207 10-250 45-256 (340)
21 4ery_A WD repeat-containing pr 100.0 1.5E-35 5.2E-40 222.6 24.1 216 1-249 88-310 (312)
22 2pbi_B Guanine nucleotide-bind 100.0 1.3E-34 4.3E-39 221.2 28.8 213 2-248 130-354 (354)
23 2xzm_R RACK1; ribosome, transl 100.0 2E-34 6.8E-39 219.3 28.3 213 1-249 50-283 (343)
24 3frx_A Guanine nucleotide-bind 100.0 5.4E-35 1.8E-39 220.2 24.5 209 9-250 6-226 (319)
25 4ery_A WD repeat-containing pr 100.0 2.1E-34 7.3E-39 216.3 26.2 215 1-250 46-267 (312)
26 1nr0_A Actin interacting prote 100.0 1.1E-34 3.7E-39 236.3 26.4 228 1-250 305-610 (611)
27 3iz6_a 40S ribosomal protein R 100.0 3.5E-35 1.2E-39 226.4 22.0 223 1-250 131-374 (380)
28 3f3f_A Nucleoporin SEH1; struc 100.0 2.3E-34 7.9E-39 218.5 25.3 224 1-250 34-336 (351)
29 3iz6_a 40S ribosomal protein R 100.0 2.5E-35 8.7E-40 227.1 20.0 216 3-250 49-279 (380)
30 2hes_X YDR267CP; beta-propelle 100.0 2.6E-34 8.8E-39 217.5 25.1 218 1-250 81-327 (330)
31 2hes_X YDR267CP; beta-propelle 100.0 3.5E-34 1.2E-38 216.7 25.4 210 8-249 2-228 (330)
32 2pm7_B Protein transport prote 100.0 5.1E-34 1.8E-38 212.8 25.8 211 14-250 3-237 (297)
33 2ymu_A WD-40 repeat protein; u 100.0 3E-34 1E-38 232.3 26.0 207 1-248 367-577 (577)
34 3vl1_A 26S proteasome regulato 100.0 4.3E-34 1.5E-38 222.9 25.8 215 1-250 120-364 (420)
35 2pbi_B Guanine nucleotide-bind 100.0 3.2E-34 1.1E-38 218.9 24.4 207 11-250 55-270 (354)
36 4g56_B MGC81050 protein; prote 100.0 1.4E-34 4.8E-39 221.1 22.4 219 2-250 72-300 (357)
37 2xzm_R RACK1; ribosome, transl 100.0 1.8E-33 6E-38 214.0 27.9 209 11-249 12-242 (343)
38 3dwl_C Actin-related protein 2 100.0 1.8E-34 6.1E-39 222.1 21.5 217 1-249 34-279 (377)
39 4e54_B DNA damage-binding prot 100.0 1.8E-34 6.2E-39 226.2 21.9 210 12-250 111-326 (435)
40 4ggc_A P55CDC, cell division c 100.0 1.1E-33 3.8E-38 212.6 25.1 229 1-250 46-314 (318)
41 2pm9_A Protein WEB1, protein t 100.0 1E-33 3.4E-38 220.4 24.5 218 1-250 90-336 (416)
42 4gga_A P55CDC, cell division c 100.0 2.2E-33 7.6E-38 219.1 26.4 224 1-249 126-393 (420)
43 3dm0_A Maltose-binding peripla 100.0 2E-33 6.8E-38 232.1 27.0 224 1-250 406-692 (694)
44 3k26_A Polycomb protein EED; W 100.0 3.7E-34 1.2E-38 219.1 21.1 221 1-250 96-365 (366)
45 3zwl_B Eukaryotic translation 100.0 2.7E-33 9.3E-38 214.4 25.2 223 1-250 55-345 (369)
46 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-33 4.1E-38 216.8 22.9 216 1-249 31-272 (372)
47 3jrp_A Fusion protein of prote 100.0 3.7E-33 1.3E-37 214.5 25.2 220 1-249 34-285 (379)
48 3bg1_A Protein SEC13 homolog; 100.0 6.7E-34 2.3E-38 214.0 20.3 207 15-250 8-246 (316)
49 1sq9_A Antiviral protein SKI8; 100.0 5.6E-33 1.9E-37 215.1 25.9 221 1-250 92-394 (397)
50 2j04_B YDR362CP, TAU91; beta p 100.0 4.5E-34 1.5E-38 227.3 20.1 224 1-249 184-426 (524)
51 4aow_A Guanine nucleotide-bind 100.0 6.9E-33 2.4E-37 210.2 25.2 224 1-250 62-336 (340)
52 2j04_B YDR362CP, TAU91; beta p 100.0 6.8E-34 2.3E-38 226.2 20.0 225 1-250 236-516 (524)
53 4aow_A Guanine nucleotide-bind 100.0 3.2E-32 1.1E-36 206.5 27.5 215 8-250 26-245 (340)
54 1gxr_A ESG1, transducin-like e 100.0 3.9E-32 1.4E-36 205.6 27.8 210 1-249 120-335 (337)
55 3i2n_A WD repeat-containing pr 100.0 1.2E-32 4.1E-37 210.1 25.1 226 1-250 91-352 (357)
56 3dm0_A Maltose-binding peripla 100.0 2.2E-32 7.5E-37 225.9 27.8 205 12-250 374-591 (694)
57 4e54_B DNA damage-binding prot 100.0 5.9E-33 2E-37 217.6 22.2 224 1-250 143-429 (435)
58 2ymu_A WD-40 repeat protein; u 100.0 2.3E-32 7.9E-37 221.2 26.1 208 1-249 326-537 (577)
59 1sq9_A Antiviral protein SKI8; 100.0 4E-33 1.4E-37 215.8 20.5 217 1-250 37-321 (397)
60 2aq5_A Coronin-1A; WD40 repeat 100.0 3.5E-32 1.2E-36 211.1 24.7 218 1-250 58-298 (402)
61 3v7d_B Cell division control p 100.0 4.7E-32 1.6E-36 214.0 25.4 212 1-250 143-380 (464)
62 3ei3_B DNA damage-binding prot 100.0 3.7E-32 1.3E-36 209.7 23.6 214 5-250 58-281 (383)
63 3jrp_A Fusion protein of prote 100.0 4E-32 1.4E-36 208.7 23.2 211 10-250 1-239 (379)
64 1r5m_A SIR4-interacting protei 100.0 3.9E-32 1.3E-36 211.7 23.4 235 1-250 131-424 (425)
65 4aez_A CDC20, WD repeat-contai 100.0 1.7E-31 5.9E-36 207.2 26.3 214 1-250 157-379 (401)
66 3vl1_A 26S proteasome regulato 100.0 1.6E-31 5.4E-36 208.4 25.7 218 1-250 79-321 (420)
67 3zwl_B Eukaryotic translation 100.0 2.9E-31 9.8E-36 203.2 26.7 203 13-250 25-248 (369)
68 3mkq_A Coatomer beta'-subunit; 100.0 5.1E-32 1.7E-36 227.2 24.2 215 1-250 36-258 (814)
69 2xyi_A Probable histone-bindin 100.0 1.1E-31 3.8E-36 210.0 23.8 233 1-250 152-409 (430)
70 3dwl_C Actin-related protein 2 100.0 9.2E-33 3.1E-37 212.6 17.3 205 19-250 9-235 (377)
71 1k8k_C P40, ARP2/3 complex 41 100.0 1.6E-31 5.6E-36 205.0 23.9 224 1-249 75-359 (372)
72 1gxr_A ESG1, transducin-like e 100.0 5.1E-31 1.7E-35 199.5 26.1 214 1-250 73-295 (337)
73 4a11_B DNA excision repair pro 100.0 3.9E-31 1.3E-35 205.1 26.0 227 1-250 67-364 (408)
74 4gq1_A NUP37; propeller, trans 100.0 2.1E-32 7.3E-37 211.7 18.8 213 1-249 112-387 (393)
75 4a11_B DNA excision repair pro 100.0 8.7E-32 3E-36 208.8 22.2 235 2-250 25-275 (408)
76 2w18_A PALB2, fancn, partner a 100.0 1.4E-31 4.9E-36 197.8 21.6 217 1-250 64-356 (356)
77 1r5m_A SIR4-interacting protei 100.0 5.9E-31 2E-35 205.1 25.4 214 1-250 69-318 (425)
78 3jro_A Fusion protein of prote 100.0 1.3E-31 4.3E-36 222.8 22.9 221 1-250 32-284 (753)
79 2pm9_A Protein WEB1, protein t 100.0 1.1E-31 3.9E-36 208.8 21.0 216 1-250 46-293 (416)
80 3gre_A Serine/threonine-protei 100.0 1.6E-31 5.6E-36 209.5 21.8 213 5-250 48-291 (437)
81 3i2n_A WD repeat-containing pr 100.0 9.9E-32 3.4E-36 205.0 20.0 229 1-249 45-289 (357)
82 3k26_A Polycomb protein EED; W 100.0 5.8E-32 2E-36 206.9 18.7 224 1-250 45-317 (366)
83 3mmy_A MRNA export factor; mRN 100.0 7.9E-32 2.7E-36 206.2 19.3 212 1-247 65-342 (368)
84 3dw8_B Serine/threonine-protei 100.0 1.8E-31 6E-36 209.7 20.9 227 1-250 51-372 (447)
85 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-30 6.4E-35 194.5 25.3 225 1-250 40-295 (313)
86 3gre_A Serine/threonine-protei 100.0 8.8E-32 3E-36 211.0 18.5 212 1-248 193-437 (437)
87 3vu4_A KMHSV2; beta-propeller 100.0 6.6E-31 2.3E-35 200.7 22.5 208 4-250 3-270 (355)
88 4aez_A CDC20, WD repeat-contai 100.0 1.4E-30 4.7E-35 202.1 24.3 213 1-249 114-334 (401)
89 3sfz_A APAF-1, apoptotic pepti 100.0 2.9E-30 1E-34 225.2 28.7 216 1-249 638-911 (1249)
90 3lrv_A PRE-mRNA-splicing facto 100.0 9.1E-31 3.1E-35 199.1 20.9 214 1-249 59-290 (343)
91 3ei3_B DNA damage-binding prot 100.0 2E-30 6.8E-35 200.0 22.5 210 1-250 142-381 (383)
92 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-30 4.1E-35 202.5 21.0 216 1-249 105-340 (402)
93 1p22_A F-BOX/WD-repeat protein 100.0 6.2E-30 2.1E-34 200.5 25.1 205 1-249 154-363 (435)
94 1pgu_A Actin interacting prote 100.0 3.3E-30 1.1E-34 209.9 24.2 211 1-250 40-282 (615)
95 3dw8_B Serine/threonine-protei 100.0 2E-29 7E-34 197.9 24.4 199 20-250 27-314 (447)
96 2oaj_A Protein SNI1; WD40 repe 100.0 5.1E-30 1.7E-34 216.3 21.4 194 19-250 15-241 (902)
97 3v7d_B Cell division control p 100.0 4.4E-29 1.5E-33 197.1 25.3 221 1-250 184-420 (464)
98 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.9E-29 1.3E-33 196.8 24.0 205 21-249 102-337 (450)
99 3f3f_A Nucleoporin SEH1; struc 100.0 3E-29 1E-33 190.3 22.7 208 14-250 5-248 (351)
100 2xyi_A Probable histone-bindin 100.0 2.7E-29 9.3E-34 196.5 22.6 202 19-250 126-352 (430)
101 3mmy_A MRNA export factor; mRN 100.0 2.7E-29 9.1E-34 192.2 21.7 210 5-250 24-303 (368)
102 3jro_A Fusion protein of prote 100.0 6.9E-30 2.4E-34 212.4 19.6 208 13-250 2-237 (753)
103 3sfz_A APAF-1, apoptotic pepti 100.0 9E-30 3.1E-34 222.2 21.1 219 1-250 984-1206(1249)
104 3mkq_A Coatomer beta'-subunit; 100.0 5E-29 1.7E-33 209.1 24.5 216 1-249 78-300 (814)
105 2j04_A TAU60, YPL007P, hypothe 100.0 1.6E-29 5.6E-34 198.1 19.6 212 2-249 66-295 (588)
106 1p22_A F-BOX/WD-repeat protein 100.0 6.2E-29 2.1E-33 194.8 22.4 214 1-250 194-413 (435)
107 1pgu_A Actin interacting prote 100.0 4.6E-29 1.6E-33 203.1 21.8 226 1-250 320-613 (615)
108 2oaj_A Protein SNI1; WD40 repe 100.0 2E-28 6.9E-33 206.6 25.5 214 1-249 40-310 (902)
109 3odt_A Protein DOA1; ubiquitin 100.0 4.5E-28 1.6E-32 181.6 24.5 203 10-250 8-254 (313)
110 4h5i_A Guanine nucleotide-exch 100.0 6.5E-29 2.2E-33 190.3 20.1 223 2-250 45-299 (365)
111 1yfq_A Cell cycle arrest prote 100.0 9.5E-29 3.3E-33 187.6 20.9 202 1-243 80-315 (342)
112 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.7E-28 1.3E-32 190.9 24.8 204 1-250 140-347 (445)
113 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1E-27 3.5E-32 188.4 26.2 204 1-250 180-390 (445)
114 3lrv_A PRE-mRNA-splicing facto 100.0 4.4E-28 1.5E-32 184.3 23.2 175 5-201 109-294 (343)
115 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.1E-28 1.1E-32 191.6 22.3 208 21-250 4-270 (450)
116 1yfq_A Cell cycle arrest prote 100.0 7.6E-28 2.6E-32 182.6 22.0 201 14-250 5-224 (342)
117 1l0q_A Surface layer protein; 100.0 1.5E-26 5.2E-31 178.7 26.3 211 1-250 13-232 (391)
118 1l0q_A Surface layer protein; 100.0 6.1E-26 2.1E-30 175.3 29.1 211 1-250 55-274 (391)
119 2j04_A TAU60, YPL007P, hypothe 100.0 6.1E-27 2.1E-31 183.7 20.9 205 19-250 13-253 (588)
120 3bws_A Protein LP49; two-domai 100.0 3.5E-26 1.2E-30 178.9 25.4 212 1-250 192-431 (433)
121 3bws_A Protein LP49; two-domai 100.0 6.3E-26 2.2E-30 177.5 25.6 212 1-250 145-389 (433)
122 4ggc_A P55CDC, cell division c 100.0 9.8E-26 3.3E-30 169.3 24.5 195 24-250 28-229 (318)
123 4gga_A P55CDC, cell division c 100.0 8.6E-26 3E-30 176.2 24.2 196 23-250 107-309 (420)
124 3vu4_A KMHSV2; beta-propeller 99.9 9.8E-26 3.3E-30 172.1 23.1 225 2-249 42-334 (355)
125 2w18_A PALB2, fancn, partner a 99.9 3E-26 1E-30 169.5 15.0 174 1-198 158-356 (356)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.5E-24 5E-29 168.8 24.7 208 1-249 160-385 (415)
127 4gq1_A NUP37; propeller, trans 99.9 1.4E-25 4.9E-30 173.5 14.0 208 30-250 98-347 (393)
128 2ojh_A Uncharacterized protein 99.9 4.2E-23 1.4E-27 153.1 22.0 213 1-250 23-257 (297)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.4E-23 8.3E-28 162.0 19.9 211 1-250 94-343 (415)
130 1pby_B Quinohemoprotein amine 99.9 2E-21 6.8E-26 146.9 26.8 218 1-250 12-309 (337)
131 3u4y_A Uncharacterized protein 99.9 1.7E-21 5.8E-26 147.1 24.5 215 1-250 21-251 (331)
132 1nir_A Nitrite reductase; hemo 99.9 2.4E-21 8.2E-26 155.3 24.8 215 1-249 160-400 (543)
133 1jmx_B Amine dehydrogenase; ox 99.9 1.9E-21 6.4E-26 147.8 22.4 215 1-250 22-324 (349)
134 3hfq_A Uncharacterized protein 99.9 2.7E-20 9.3E-25 141.5 27.8 227 1-249 64-315 (347)
135 2oit_A Nucleoporin 214KDA; NH2 99.9 3.5E-22 1.2E-26 156.1 17.3 167 20-250 91-277 (434)
136 2oit_A Nucleoporin 214KDA; NH2 99.9 2.7E-22 9.4E-27 156.7 16.4 180 21-250 36-222 (434)
137 1ri6_A Putative isomerase YBHE 99.9 1.8E-20 6.3E-25 141.9 23.9 217 1-249 61-306 (343)
138 1nir_A Nitrite reductase; hemo 99.9 4.8E-21 1.7E-25 153.5 21.3 232 1-250 201-457 (543)
139 3vgz_A Uncharacterized protein 99.9 1.2E-19 4.2E-24 138.0 27.6 221 2-250 71-302 (353)
140 1ri6_A Putative isomerase YBHE 99.9 7.6E-20 2.6E-24 138.5 25.6 217 1-250 16-261 (343)
141 2ecf_A Dipeptidyl peptidase IV 99.9 1.6E-20 5.5E-25 156.3 22.6 211 1-249 65-365 (741)
142 2ojh_A Uncharacterized protein 99.9 1E-20 3.4E-25 140.2 18.4 205 2-242 64-293 (297)
143 3u4y_A Uncharacterized protein 99.9 8.6E-20 2.9E-24 137.8 21.8 216 1-250 63-303 (331)
144 1xfd_A DIP, dipeptidyl aminope 99.9 6.2E-20 2.1E-24 152.4 22.6 215 1-248 38-341 (723)
145 1z68_A Fibroblast activation p 99.8 4.2E-20 1.4E-24 153.3 16.1 216 1-249 37-344 (719)
146 2z3z_A Dipeptidyl aminopeptida 99.8 2E-19 6.8E-24 149.0 19.6 225 1-249 102-389 (706)
147 2ecf_A Dipeptidyl peptidase IV 99.8 1.6E-19 5.5E-24 150.3 18.4 221 1-249 130-411 (741)
148 3hfq_A Uncharacterized protein 99.8 4.2E-18 1.4E-22 129.4 23.7 218 2-249 18-269 (347)
149 2z3z_A Dipeptidyl aminopeptida 99.8 2.1E-18 7.2E-23 142.9 23.8 215 1-250 142-434 (706)
150 3vgz_A Uncharacterized protein 99.8 2.9E-18 9.8E-23 130.4 22.3 197 20-250 39-261 (353)
151 3o4h_A Acylamino-acid-releasin 99.8 1.5E-18 5.2E-23 140.7 19.5 205 1-249 45-274 (582)
152 3scy_A Hypothetical bacterial 99.8 1.5E-16 5.3E-21 121.5 28.8 226 2-249 77-335 (361)
153 1xfd_A DIP, dipeptidyl aminope 99.8 6.2E-19 2.1E-23 146.4 16.7 197 22-249 17-287 (723)
154 1k32_A Tricorn protease; prote 99.8 4.6E-18 1.6E-22 146.4 22.3 220 1-250 225-460 (1045)
155 1jof_A Carboxy-CIS,CIS-muconat 99.8 6.9E-18 2.4E-22 129.2 21.0 225 1-249 61-339 (365)
156 1k32_A Tricorn protease; prote 99.8 5E-18 1.7E-22 146.1 17.7 207 2-249 267-500 (1045)
157 3scy_A Hypothetical bacterial 99.8 5.9E-16 2E-20 118.2 25.3 216 2-249 29-289 (361)
158 1q7f_A NHL, brain tumor CG1071 99.8 2E-15 7E-20 111.6 27.1 207 2-249 53-278 (286)
159 2oiz_A Aromatic amine dehydrog 99.8 1.1E-16 3.8E-21 122.2 20.3 217 1-250 32-333 (361)
160 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.4E-16 8.1E-21 120.7 22.0 221 2-249 16-289 (365)
161 4a5s_A Dipeptidyl peptidase 4 99.8 1E-16 3.5E-21 133.4 20.5 216 1-249 37-351 (740)
162 3o4h_A Acylamino-acid-releasin 99.8 3.7E-17 1.3E-21 132.6 16.6 186 21-250 21-226 (582)
163 1jmx_B Amine dehydrogenase; ox 99.7 2.7E-16 9.2E-21 119.3 19.3 152 26-203 4-179 (349)
164 3fvz_A Peptidyl-glycine alpha- 99.7 1.6E-15 5.5E-20 114.4 22.5 221 1-249 70-320 (329)
165 1pby_B Quinohemoprotein amine 99.7 5.1E-16 1.7E-20 117.1 19.3 144 36-203 3-167 (337)
166 1z68_A Fibroblast activation p 99.7 2.2E-17 7.7E-22 137.0 12.7 197 25-248 19-284 (719)
167 3dsm_A Uncharacterized protein 99.7 8.1E-15 2.8E-19 110.5 22.2 217 1-249 65-300 (328)
168 3pe7_A Oligogalacturonate lyas 99.7 1.4E-15 4.7E-20 117.2 18.3 215 2-250 62-328 (388)
169 3pe7_A Oligogalacturonate lyas 99.7 9.3E-15 3.2E-19 112.6 21.7 210 4-250 14-272 (388)
170 2dg1_A DRP35, lactonase; beta 99.7 4.6E-14 1.6E-18 106.5 25.1 217 2-249 29-261 (333)
171 3e5z_A Putative gluconolactona 99.7 4E-14 1.4E-18 105.2 23.8 203 10-249 17-244 (296)
172 3no2_A Uncharacterized protein 99.7 5E-14 1.7E-18 103.4 23.4 199 1-238 16-230 (276)
173 2gop_A Trilobed protease; beta 99.7 4.3E-15 1.5E-19 112.7 18.0 193 2-249 45-289 (347)
174 3azo_A Aminopeptidase; POP fam 99.7 1E-14 3.5E-19 120.0 20.6 216 2-248 49-320 (662)
175 4a5s_A Dipeptidyl peptidase 4 99.7 1.1E-14 3.6E-19 121.4 20.3 199 21-249 16-292 (740)
176 1q7f_A NHL, brain tumor CG1071 99.7 2.1E-13 7.2E-18 100.7 24.2 200 19-249 27-236 (286)
177 1rwi_B Serine/threonine-protei 99.7 2.7E-13 9.3E-18 99.2 24.3 212 2-249 48-262 (270)
178 3c5m_A Oligogalacturonate lyas 99.6 9.9E-15 3.4E-19 112.6 16.9 221 2-249 62-327 (396)
179 3azo_A Aminopeptidase; POP fam 99.6 2.1E-14 7.3E-19 118.1 18.7 200 11-247 115-363 (662)
180 1qks_A Cytochrome CD1 nitrite 99.6 9.6E-13 3.3E-17 105.7 26.5 214 1-249 178-419 (567)
181 3e5z_A Putative gluconolactona 99.6 6.9E-13 2.4E-17 98.5 23.6 205 2-244 52-280 (296)
182 3no2_A Uncharacterized protein 99.6 1.1E-13 3.9E-18 101.6 18.4 178 36-249 7-193 (276)
183 3fvz_A Peptidyl-glycine alpha- 99.6 1.1E-12 3.9E-17 98.8 23.2 197 20-249 22-275 (329)
184 2dg1_A DRP35, lactonase; beta 99.6 8.6E-12 3E-16 94.0 27.8 204 2-241 68-300 (333)
185 3c5m_A Oligogalacturonate lyas 99.6 9.4E-14 3.2E-18 107.1 17.3 205 4-249 14-271 (396)
186 2xdw_A Prolyl endopeptidase; a 99.6 8.1E-13 2.8E-17 109.6 23.1 216 1-249 152-412 (710)
187 2oiz_A Aromatic amine dehydrog 99.6 1.3E-12 4.3E-17 99.8 20.7 216 2-233 83-360 (361)
188 3dsm_A Uncharacterized protein 99.6 2.3E-12 8E-17 97.1 21.4 210 1-249 18-251 (328)
189 2mad_H Methylamine dehydrogena 99.5 2.5E-11 8.5E-16 92.9 25.4 217 1-250 48-349 (373)
190 2bkl_A Prolyl endopeptidase; m 99.5 2.8E-12 9.5E-17 106.2 20.4 197 19-249 118-347 (695)
191 2xdw_A Prolyl endopeptidase; a 99.5 2.1E-12 7.2E-17 107.2 19.5 198 19-249 122-366 (710)
192 2gop_A Trilobed protease; beta 99.5 2.4E-12 8.1E-17 97.6 17.9 198 2-249 87-329 (347)
193 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 7E-11 2.4E-15 88.2 25.3 213 2-249 48-297 (314)
194 1qks_A Cytochrome CD1 nitrite 99.5 1.4E-11 4.9E-16 99.0 22.5 185 31-250 165-372 (567)
195 2z2n_A Virginiamycin B lyase; 99.5 4.1E-10 1.4E-14 83.3 27.4 208 2-249 38-253 (299)
196 1rwi_B Serine/threonine-protei 99.5 2.5E-11 8.6E-16 88.7 20.3 192 23-249 25-220 (270)
197 2bkl_A Prolyl endopeptidase; m 99.5 8.7E-12 3E-16 103.2 19.8 212 1-249 148-395 (695)
198 3hrp_A Uncharacterized protein 99.5 2.7E-10 9.3E-15 88.3 26.0 211 2-250 154-409 (409)
199 1xip_A Nucleoporin NUP159; bet 99.4 2.7E-12 9.2E-17 97.8 14.1 143 19-237 86-230 (388)
200 3c75_H MADH, methylamine dehyd 99.4 1.6E-11 5.5E-16 94.8 17.5 220 1-250 100-401 (426)
201 2z2n_A Virginiamycin B lyase; 99.4 1.2E-09 4E-14 80.8 27.1 190 20-249 97-293 (299)
202 1xip_A Nucleoporin NUP159; bet 99.4 6.7E-12 2.3E-16 95.6 13.7 151 23-249 39-189 (388)
203 3g4e_A Regucalcin; six bladed 99.4 3.1E-10 1E-14 84.3 22.4 200 2-237 37-258 (297)
204 3g4e_A Regucalcin; six bladed 99.4 6.7E-10 2.3E-14 82.4 24.0 200 19-249 10-227 (297)
205 2qc5_A Streptogramin B lactona 99.4 2.6E-09 9E-14 78.9 27.2 208 2-249 43-258 (300)
206 1yr2_A Prolyl oligopeptidase; 99.4 1.4E-10 4.8E-15 96.7 21.1 213 1-249 190-439 (741)
207 2qc5_A Streptogramin B lactona 99.3 8.2E-09 2.8E-13 76.3 26.2 208 2-249 85-298 (300)
208 1yr2_A Prolyl oligopeptidase; 99.3 1.5E-10 5.2E-15 96.5 18.4 195 19-249 160-391 (741)
209 1mda_H Methylamine dehydrogena 99.3 2.6E-10 9.1E-15 86.6 18.0 98 1-114 47-158 (368)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1.4E-09 4.9E-14 81.0 21.8 203 19-249 15-254 (314)
211 3sjl_D Methylamine dehydrogena 99.3 5.2E-10 1.8E-14 85.1 18.2 178 1-200 60-257 (386)
212 2iwa_A Glutamine cyclotransfer 99.3 7.7E-09 2.6E-13 74.7 23.0 212 9-249 8-235 (266)
213 2ghs_A AGR_C_1268P; regucalcin 99.3 1.4E-08 4.9E-13 76.3 25.1 199 2-238 73-289 (326)
214 2qe8_A Uncharacterized protein 99.3 8.7E-10 3E-14 83.5 18.2 196 19-241 64-311 (343)
215 2hz6_A Endoplasmic reticulum t 99.3 2E-12 6.7E-17 99.0 3.5 167 2-249 21-190 (369)
216 3hrp_A Uncharacterized protein 99.3 7.2E-09 2.4E-13 80.4 23.4 201 22-249 131-352 (409)
217 3dr2_A Exported gluconolactona 99.2 9.6E-09 3.3E-13 76.5 22.6 161 12-200 36-225 (305)
218 2ghs_A AGR_C_1268P; regucalcin 99.2 9.3E-09 3.2E-13 77.3 22.6 195 23-249 50-258 (326)
219 2ece_A 462AA long hypothetical 99.2 3.9E-09 1.3E-13 81.1 19.9 211 1-239 107-399 (462)
220 3sjl_D Methylamine dehydrogena 99.2 1.9E-09 6.6E-14 82.0 17.0 213 1-250 110-362 (386)
221 3iuj_A Prolyl endopeptidase; h 99.2 3.1E-09 1E-13 88.0 18.3 213 1-249 156-403 (693)
222 3nol_A Glutamine cyclotransfer 99.1 2.5E-08 8.5E-13 71.3 19.2 200 10-238 31-243 (262)
223 3iuj_A Prolyl endopeptidase; h 99.1 6E-09 2E-13 86.3 18.0 196 19-249 126-357 (693)
224 3mbr_X Glutamine cyclotransfer 99.1 8.9E-08 3E-12 67.9 20.7 201 10-239 9-223 (243)
225 2ece_A 462AA long hypothetical 99.1 1.2E-07 4E-12 73.1 22.6 230 2-249 45-350 (462)
226 3dr2_A Exported gluconolactona 99.1 6.7E-08 2.3E-12 71.9 20.7 207 2-249 69-304 (305)
227 3nok_A Glutaminyl cyclase; bet 99.1 9.4E-08 3.2E-12 68.4 20.0 199 11-239 44-254 (268)
228 2mad_H Methylamine dehydrogena 99.0 1.4E-07 4.9E-12 72.1 20.9 194 2-201 99-352 (373)
229 1kb0_A Quinohemoprotein alcoho 99.0 2.4E-07 8.4E-12 76.4 21.4 109 2-122 192-354 (677)
230 2qe8_A Uncharacterized protein 99.0 9.9E-08 3.4E-12 72.2 17.8 209 22-249 17-276 (343)
231 1fwx_A Nitrous oxide reductase 99.0 1E-07 3.6E-12 75.8 18.1 210 2-239 114-406 (595)
232 1yiq_A Quinohemoprotein alcoho 98.9 3.3E-07 1.1E-11 75.8 20.4 107 2-119 185-343 (689)
233 2hz6_A Endoplasmic reticulum t 98.9 3.8E-10 1.3E-14 86.4 1.0 140 32-249 8-147 (369)
234 3hxj_A Pyrrolo-quinoline quino 98.8 5.3E-07 1.8E-11 67.5 17.9 202 2-249 119-322 (330)
235 1fwx_A Nitrous oxide reductase 98.8 2.6E-07 9E-12 73.6 16.7 194 32-249 100-359 (595)
236 3c75_H MADH, methylamine dehyd 98.8 7.3E-07 2.5E-11 69.0 17.4 186 31-249 82-293 (426)
237 3qqz_A Putative uncharacterize 98.8 1.2E-05 4E-10 57.8 24.2 203 15-248 21-250 (255)
238 3hxj_A Pyrrolo-quinoline quino 98.8 1.2E-06 4E-11 65.7 17.3 173 36-248 109-281 (330)
239 1kb0_A Quinohemoprotein alcoho 98.7 1.7E-06 5.8E-11 71.4 18.1 113 2-123 140-301 (677)
240 3q7m_A Lipoprotein YFGL, BAMB; 98.7 2.4E-06 8.2E-11 65.4 17.8 210 2-249 155-376 (376)
241 2iwa_A Glutamine cyclotransfer 98.7 1E-06 3.4E-11 63.7 14.4 170 1-200 45-238 (266)
242 1npe_A Nidogen, entactin; glyc 98.7 2.9E-05 9.8E-10 56.4 24.4 191 22-249 36-236 (267)
243 1mda_H Methylamine dehydrogena 98.7 2.8E-06 9.5E-11 64.7 17.1 189 1-201 97-348 (368)
244 3q7m_A Lipoprotein YFGL, BAMB; 98.7 2E-05 6.9E-10 60.2 22.2 204 2-249 115-335 (376)
245 1yiq_A Quinohemoprotein alcoho 98.7 3.2E-06 1.1E-10 69.9 18.0 114 2-123 133-293 (689)
246 3mbr_X Glutamine cyclotransfer 98.6 5.9E-06 2E-10 58.6 15.6 98 2-123 45-142 (243)
247 3nol_A Glutamine cyclotransfer 98.6 5.9E-06 2E-10 59.1 15.3 117 1-142 66-186 (262)
248 2xe4_A Oligopeptidase B; hydro 98.6 2.5E-05 8.6E-10 65.4 21.1 187 23-247 175-394 (751)
249 3v65_B Low-density lipoprotein 98.5 0.00014 4.7E-09 55.9 23.5 213 2-248 98-315 (386)
250 3nok_A Glutaminyl cyclase; bet 98.4 4E-05 1.4E-09 54.9 15.8 115 2-142 77-195 (268)
251 1k3i_A Galactose oxidase precu 98.4 8.5E-05 2.9E-09 61.3 20.2 99 2-119 221-328 (656)
252 1kv9_A Type II quinohemoprotei 98.4 0.00013 4.3E-09 60.3 20.7 107 2-119 180-338 (668)
253 3tc9_A Hypothetical hydrolase; 98.4 0.00048 1.6E-08 53.7 23.3 119 2-142 161-285 (430)
254 3v64_C Agrin; beta propeller, 98.3 0.00059 2E-08 51.7 26.5 212 2-248 55-272 (349)
255 2fp8_A Strictosidine synthase; 98.3 0.00057 1.9E-08 51.0 20.6 197 22-239 19-247 (322)
256 1kv9_A Type II quinohemoprotei 98.3 0.00035 1.2E-08 57.7 20.6 101 2-122 78-195 (668)
257 1n7d_A LDL receptor, low-densi 98.3 9.3E-05 3.2E-09 61.4 17.2 214 2-248 388-611 (699)
258 1ijq_A LDL receptor, low-densi 98.3 0.00061 2.1E-08 50.8 26.4 213 2-248 12-235 (316)
259 1npe_A Nidogen, entactin; glyc 98.2 0.00057 1.9E-08 49.5 24.7 190 2-229 60-260 (267)
260 2p4o_A Hypothetical protein; p 98.2 0.00071 2.4E-08 50.1 23.9 202 9-249 21-240 (306)
261 4hw6_A Hypothetical protein, I 98.2 0.0011 3.6E-08 51.9 23.5 223 2-250 164-432 (433)
262 2p4o_A Hypothetical protein; p 98.2 0.0008 2.7E-08 49.8 22.4 185 22-239 72-276 (306)
263 3p5b_L Low density lipoprotein 98.2 0.0012 4.2E-08 50.9 25.5 215 2-248 94-317 (400)
264 2fp8_A Strictosidine synthase; 98.2 0.00079 2.7E-08 50.2 19.0 71 23-114 127-216 (322)
265 2p9w_A MAL S 1 allergenic prot 98.1 0.0015 5.2E-08 48.5 18.3 182 19-250 10-214 (334)
266 2ad6_A Methanol dehydrogenase 98.1 0.0011 3.9E-08 53.6 19.3 86 26-122 239-343 (571)
267 3sov_A LRP-6, low-density lipo 98.0 0.0019 6.6E-08 48.1 23.0 213 2-249 15-236 (318)
268 3pbp_A Nucleoporin NUP82; beta 98.0 0.0006 2E-08 52.3 15.9 151 94-246 31-207 (452)
269 3v65_B Low-density lipoprotein 98.0 0.0032 1.1E-07 48.4 20.8 175 44-249 96-275 (386)
270 1w6s_A Methanol dehydrogenase 98.0 0.0034 1.2E-07 51.1 20.3 87 26-122 245-350 (599)
271 3m0c_C LDL receptor, low-densi 98.0 0.006 2.1E-07 51.3 25.1 174 2-200 406-590 (791)
272 1k3i_A Galactose oxidase precu 98.0 0.00045 1.5E-08 57.0 15.5 101 26-143 190-303 (656)
273 1flg_A Protein (quinoprotein e 97.9 0.0036 1.2E-07 50.8 20.2 71 44-123 291-364 (582)
274 3tc9_A Hypothetical hydrolase; 97.9 0.0017 5.8E-08 50.6 17.1 149 80-249 139-299 (430)
275 4a0p_A LRP6, LRP-6, low-densit 97.9 0.0065 2.2E-07 49.8 25.2 210 2-248 17-234 (628)
276 3v64_C Agrin; beta propeller, 97.8 0.0058 2E-07 46.2 21.8 190 23-249 35-232 (349)
277 2xe4_A Oligopeptidase B; hydro 97.8 0.0054 1.8E-07 51.5 19.5 91 2-115 203-305 (751)
278 2ad6_A Methanol dehydrogenase 97.8 0.00048 1.6E-08 55.8 12.2 81 42-142 442-522 (571)
279 1ijq_A LDL receptor, low-densi 97.8 0.0065 2.2E-07 45.2 20.9 171 44-249 10-193 (316)
280 1flg_A Protein (quinoprotein e 97.7 0.00036 1.2E-08 56.6 11.1 81 43-143 465-545 (582)
281 3s94_A LRP-6, low-density lipo 97.7 0.014 4.8E-07 47.8 22.7 174 2-200 20-203 (619)
282 3ei3_A DNA damage-binding prot 97.7 0.019 6.5E-07 50.5 21.3 216 2-247 809-1058(1158)
283 4a2l_A BT_4663, two-component 97.7 0.02 6.9E-07 48.3 27.1 202 21-249 262-478 (795)
284 1n7d_A LDL receptor, low-densi 97.6 0.0019 6.6E-08 53.6 14.1 156 23-203 454-618 (699)
285 4a2l_A BT_4663, two-component 97.6 0.027 9.3E-07 47.6 27.8 194 21-248 405-611 (795)
286 1w6s_A Methanol dehydrogenase 97.6 0.015 5.1E-07 47.4 18.2 104 2-123 75-200 (599)
287 4hw6_A Hypothetical protein, I 97.5 0.011 3.7E-07 46.2 16.6 149 80-249 141-302 (433)
288 3amr_A 3-phytase; beta-propell 97.4 0.021 7.1E-07 42.9 19.3 188 2-249 52-261 (355)
289 3v9f_A Two-component system se 97.4 0.042 1.4E-06 46.3 23.3 155 21-200 406-569 (781)
290 3sov_A LRP-6, low-density lipo 97.4 0.02 7E-07 42.6 17.5 175 43-249 12-195 (318)
291 3qqz_A Putative uncharacterize 97.4 0.019 6.7E-07 41.1 18.7 159 78-249 27-202 (255)
292 3m0c_C LDL receptor, low-densi 97.3 0.063 2.1E-06 45.3 20.6 153 77-249 423-587 (791)
293 2xn4_A Kelch-like protein 2; s 97.3 0.03 1E-06 41.2 19.4 181 32-249 61-274 (302)
294 3v9f_A Two-component system se 97.2 0.076 2.6E-06 44.8 24.4 204 21-249 257-476 (781)
295 2vpj_A Kelch-like protein 12; 97.1 0.043 1.5E-06 40.3 21.5 208 2-249 33-276 (301)
296 2p9w_A MAL S 1 allergenic prot 97.0 0.065 2.2E-06 39.9 19.4 151 2-199 37-215 (334)
297 3ii7_A Kelch-like protein 7; p 96.9 0.073 2.5E-06 39.1 20.4 96 2-120 26-133 (306)
298 3kya_A Putative phosphatase; s 96.9 0.12 4E-06 41.0 16.3 159 79-248 140-338 (496)
299 3p5b_L Low density lipoprotein 96.8 0.11 3.8E-06 40.0 24.3 157 22-203 159-324 (400)
300 3pbp_A Nucleoporin NUP82; beta 96.6 0.17 5.8E-06 39.1 14.9 80 23-114 67-158 (452)
301 3kya_A Putative phosphatase; s 96.5 0.22 7.4E-06 39.5 24.3 122 2-142 164-325 (496)
302 1zgk_A Kelch-like ECH-associat 96.5 0.16 5.4E-06 37.4 19.0 61 179-249 215-285 (308)
303 2xbg_A YCF48-like protein; pho 96.5 0.17 5.8E-06 37.7 22.3 190 22-248 122-319 (327)
304 2xzh_A Clathrin heavy chain 1; 96.3 0.21 7.3E-06 37.2 21.8 198 27-250 72-289 (365)
305 4a0p_A LRP6, LRP-6, low-densit 96.2 0.4 1.4E-05 39.4 21.1 175 42-249 13-195 (628)
306 3amr_A 3-phytase; beta-propell 96.1 0.31 1.1E-05 36.7 17.1 152 36-248 42-207 (355)
307 3s94_A LRP-6, low-density lipo 96.0 0.54 1.9E-05 38.6 23.3 155 22-200 349-511 (619)
308 4asc_A Kelch repeat and BTB do 95.7 0.42 1.5E-05 35.2 17.8 97 2-119 15-131 (315)
309 1xi4_A Clathrin heavy chain; a 95.3 1.7 5.7E-05 39.4 17.0 198 28-250 72-288 (1630)
310 4gq2_M Nucleoporin NUP120; bet 95.2 1.1 3.8E-05 38.9 15.3 36 166-204 236-271 (950)
311 3das_A Putative oxidoreductase 95.2 0.68 2.3E-05 34.9 14.5 112 20-145 30-158 (347)
312 1tl2_A L10, protein (tachylect 95.2 0.49 1.7E-05 33.1 15.2 75 22-113 41-115 (236)
313 3a9g_A Putative uncharacterize 95.2 0.61 2.1E-05 35.2 12.5 106 22-145 29-153 (354)
314 3sre_A PON1, serum paraoxonase 95.1 0.75 2.6E-05 34.8 20.6 198 21-239 49-285 (355)
315 2uvk_A YJHT; unknown function, 94.9 0.84 2.9E-05 34.2 12.7 12 44-55 168-179 (357)
316 1bpo_A Protein (clathrin); cla 94.9 1 3.6E-05 35.1 22.5 199 26-250 70-288 (494)
317 2xbg_A YCF48-like protein; pho 94.8 0.87 3E-05 33.9 20.2 154 19-197 160-320 (327)
318 2woz_A Kelch repeat and BTB do 94.5 0.98 3.4E-05 33.3 20.4 27 94-120 109-142 (318)
319 2be1_A Serine/threonine-protei 94.5 1.1 3.8E-05 33.6 15.2 111 2-124 22-140 (339)
320 2ism_A Putative oxidoreductase 94.4 1.2 4E-05 33.6 20.7 106 22-145 31-153 (352)
321 2zwa_A Leucine carboxyl methyl 94.4 1.9 6.5E-05 36.0 19.1 66 32-116 451-524 (695)
322 2xzh_A Clathrin heavy chain 1; 94.2 1.3 4.3E-05 33.2 26.0 96 1-116 88-191 (365)
323 3sbq_A Nitrous-oxide reductase 94.1 0.35 1.2E-05 38.8 8.7 74 21-114 322-408 (638)
324 1cru_A Protein (soluble quinop 93.9 1.9 6.4E-05 33.9 14.0 112 22-145 27-162 (454)
325 3ii7_A Kelch-like protein 7; p 92.9 2 6.8E-05 31.3 17.5 171 2-202 72-275 (306)
326 2be1_A Serine/threonine-protei 92.7 1 3.6E-05 33.7 9.1 68 36-118 12-80 (339)
327 1bpo_A Protein (clathrin); cla 92.5 3.1 0.0001 32.6 25.8 180 1-203 87-293 (494)
328 3ei3_A DNA damage-binding prot 92.2 6.1 0.00021 35.2 26.6 102 2-119 494-596 (1158)
329 2g8s_A Glucose/sorbosone dehyd 92.0 3.1 0.00011 31.3 14.8 53 79-137 19-76 (353)
330 1xi4_A Clathrin heavy chain; a 91.8 7.6 0.00026 35.5 17.1 96 1-116 87-190 (1630)
331 2vpj_A Kelch-like protein 12; 91.7 2.8 9.6E-05 30.4 17.0 69 32-120 112-190 (301)
332 3a9g_A Putative uncharacterize 91.4 3.6 0.00012 31.0 21.2 68 166-239 259-330 (354)
333 1zgk_A Kelch-like ECH-associat 91.2 3.3 0.00011 30.3 17.4 27 94-120 70-105 (308)
334 2xn4_A Kelch-like protein 2; s 90.5 3.8 0.00013 29.8 17.3 27 94-120 61-92 (302)
335 2g8s_A Glucose/sorbosone dehyd 88.7 6.3 0.00021 29.6 18.7 71 167-244 272-347 (353)
336 4gq2_M Nucleoporin NUP120; bet 88.3 12 0.00042 32.5 16.9 38 78-121 236-273 (950)
337 2ism_A Putative oxidoreductase 87.0 8.1 0.00028 29.0 21.6 64 167-238 269-332 (352)
338 2wg3_C Hedgehog-interacting pr 85.2 12 0.00042 29.4 13.0 30 23-52 15-44 (463)
339 3f7f_A Nucleoporin NUP120; nuc 84.8 11 0.00036 31.6 10.1 37 23-62 223-259 (729)
340 4asc_A Kelch repeat and BTB do 84.6 9.7 0.00033 27.8 12.2 96 2-120 119-227 (315)
341 3ott_A Two-component system se 84.3 17 0.0006 30.4 21.6 190 22-246 419-622 (758)
342 1tl2_A L10, protein (tachylect 84.3 8.7 0.0003 27.0 12.1 67 168-245 90-157 (236)
343 1cru_A Protein (soluble quinop 82.6 16 0.00054 28.7 13.9 33 78-116 27-59 (454)
344 2woz_A Kelch repeat and BTB do 81.4 13 0.00046 27.1 16.0 27 94-120 158-190 (318)
345 4fhn_B Nucleoporin NUP120; pro 81.4 7.6 0.00026 34.5 8.7 34 168-204 240-273 (1139)
346 3sbq_A Nitrous-oxide reductase 81.1 21 0.00071 29.1 16.0 77 169-249 326-406 (638)
347 4fhn_B Nucleoporin NUP120; pro 81.0 1.3 4.3E-05 39.3 3.8 39 23-62 239-277 (1139)
348 3das_A Putative oxidoreductase 73.9 26 0.00089 26.4 13.9 33 78-116 32-64 (347)
349 3f7f_A Nucleoporin NUP120; nuc 73.4 40 0.0014 28.3 16.7 30 94-123 230-259 (729)
350 3ott_A Two-component system se 72.6 42 0.0014 28.2 24.1 184 22-248 63-257 (758)
351 3sre_A PON1, serum paraoxonase 72.2 29 0.001 26.2 17.4 68 166-249 165-250 (355)
352 2uvk_A YJHT; unknown function, 67.7 26 0.00088 26.0 7.6 28 94-121 316-349 (357)
353 3q6k_A 43.2 kDa salivary prote 65.1 44 0.0015 25.5 18.8 59 2-60 125-197 (381)
354 3zwu_A Alkaline phosphatase PH 65.0 22 0.00074 29.1 6.9 57 80-142 478-546 (592)
355 3q6k_A 43.2 kDa salivary prote 63.3 48 0.0016 25.4 19.2 91 22-121 87-197 (381)
356 3zwu_A Alkaline phosphatase PH 62.9 37 0.0013 27.8 7.8 59 24-101 478-548 (592)
357 4a9v_A PHOX; hydrolase, beta-p 55.7 71 0.0024 26.1 8.1 62 22-102 476-549 (592)
358 4a9v_A PHOX; hydrolase, beta-p 51.3 53 0.0018 26.8 6.8 58 79-142 477-546 (592)
359 2zwa_A Leucine carboxyl methyl 47.6 1.2E+02 0.0042 25.3 15.0 147 94-249 397-575 (695)
360 3no0_A DNA gyrase subunit A; D 47.6 76 0.0026 22.8 19.2 126 20-200 66-197 (276)
361 3uc1_A DNA gyrase subunit A; D 44.0 97 0.0033 23.0 19.1 127 22-200 95-229 (327)
362 3mez_B Mannose-specific lectin 39.6 61 0.0021 19.5 9.1 48 95-142 24-71 (113)
363 4gz8_A Semaphorin-3A; multi-do 33.2 2.1E+02 0.007 24.0 7.8 62 182-246 431-495 (667)
364 2wg3_C Hedgehog-interacting pr 31.3 1.9E+02 0.0066 22.7 14.6 29 79-113 15-44 (463)
365 3b7f_A Glycosyl hydrolase, BNR 28.8 1.9E+02 0.0064 21.8 15.9 47 95-142 22-72 (394)
366 1olz_A Semaphorin 4D; developm 28.1 2.6E+02 0.009 23.3 8.3 59 181-246 416-477 (663)
367 1suu_A DNA gyrase subunit A; t 27.8 1.8E+02 0.0062 21.3 19.0 114 33-200 114-232 (312)
368 1ukf_A Avirulence protein AVRP 27.6 48 0.0016 22.3 2.7 37 19-55 116-152 (188)
369 3ol2_B Plexin-B1; beta-propell 27.0 2.4E+02 0.0083 22.7 7.0 70 23-110 388-462 (528)
370 1suu_A DNA gyrase subunit A; t 23.2 2.2E+02 0.0077 20.8 20.1 80 165-249 150-229 (312)
371 1q47_A Semaphorin 3A; beta pro 21.0 3.2E+02 0.011 21.8 7.0 27 77-109 461-487 (495)
372 3al9_A Plexin-A2; beta-propell 20.7 1.8E+02 0.006 23.5 5.2 70 23-109 401-476 (539)
373 3mwp_A Nucleoprotein; structur 20.2 25 0.00086 27.2 0.3 17 39-55 162-178 (577)
No 1
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=251.83 Aligned_cols=216 Identities=15% Similarity=0.105 Sum_probs=176.3
Q ss_pred CcEEEEcccceeeee----eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649 1 MWQIIDIRQHCLYKS----LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 1 ti~iwd~~~~~~~~~----l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
+|+|||+++++.+.. +. +|.+.|++++|+|+++ +|++|+.|++|++||+++++++..+. + |
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~-~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~-~------------h 168 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKY-EHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYR-A------------H 168 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEEC-C------------C
T ss_pred EEEEEeccCCCceeEeecccc-CCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEc-C------------c
Confidence 589999998876543 44 8999999999999999 89999999999999999999888876 3 5
Q ss_pred CCceeEEecCCCcccCCCC-CEEEEEeCCCeEEEEeCCCceeEeeccCC-CCCCccceeecccceeEEEeeeee----ec
Q 025649 77 PAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTSKVNIRDAEMEILD----QS 150 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~ 150 (250)
...|.+++|+| ++ .+|++++.|++|++||+++++....+... ....+.+++|+|++..++..+..| .+
T Consensus 169 ~~~V~~~~~~~------~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 169 AAQVTCVAASP------HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp SSCEEEEEECS------SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred CCceEEEEecC------CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEE
Confidence 78999999998 65 57899999999999999998877665433 345688999999765443344333 33
Q ss_pred cCeeeeeeccccCccccEEEEEeecCCCCC-cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649 151 GGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 229 (250)
Q Consensus 151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 229 (250)
+....+++..+.+|...|++++|+ |++ ++|++|+.|++|+|||++++ ++ ..+.+|.+.|++++|+|
T Consensus 243 d~~~~~~~~~~~~h~~~v~~v~fs---p~g~~~lasgs~D~~i~vwd~~~~---------~~-~~~~~H~~~V~~v~~sp 309 (344)
T 4gqb_B 243 DTKSTSCVLSSAVHSQCVTGLVFS---PHSVPFLASLSEDCSLAVLDSSLS---------EL-FRSQAHRDFVRDATWSP 309 (344)
T ss_dssp ESCC--CCEEEECCSSCEEEEEEC---SSSSCCEEEEETTSCEEEECTTCC---------EE-EEECCCSSCEEEEEECS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEc---cCCCeEEEEEeCCCeEEEEECCCC---------cE-EEEcCCCCCEEEEEEeC
Confidence 445566778899999999999999 776 68999999999999999986 33 35689999999999998
Q ss_pred CCCCeEEEeeCCceEEEEeCC
Q 025649 230 TESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 230 ~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.+..+|++|+.|++|++|+++
T Consensus 310 ~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 310 LNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp SSTTEEEEEETTSCEEEEECC
T ss_pred CCCeEEEEEcCCCeEEEEECC
Confidence 444567899999999999974
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.4e-40 Score=246.27 Aligned_cols=214 Identities=16% Similarity=0.185 Sum_probs=187.7
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+.+++.+..+. .|...+.+++|+|+++ +|++|+.||.|++||+++++....+.. +...+
T Consensus 103 ~i~lWd~~~~~~~~~~~-~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~-------------~~~~v 167 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSID-AGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDT-------------RGKFI 167 (321)
T ss_dssp EEEEEETTTTEEEEEEE-CCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEEC-------------SSSCE
T ss_pred cEEEEECCCCCEEEEEe-CCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecC-------------CCceE
Confidence 58999999999999999 9999999999999999 899999999999999999887776653 35679
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLH 156 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 156 (250)
.+++|+| ++++|++|+.|+.|++||+++++....+..+ ...+.+++|+|+++++++ +..| .++....+
T Consensus 168 ~~~~~sp------dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spd~~~l~s-~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 168 LSIAYSP------DGKYLASGAIDGIINIFDIATGKLLHTLEGH-AMPIRSLTFSPDSQLLVT-ASDDGYIKIYDVQHAN 239 (321)
T ss_dssp EEEEECT------TSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCCCEEEECTTSCEEEE-ECTTSCEEEEETTTCC
T ss_pred EEEEECC------CCCEEEEEcCCCeEEEEECCCCcEEEEEccc-CCceeEEEEcCCCCEEEE-EcCCCeEEEEECCCcc
Confidence 9999999 9999999999999999999999887776544 478999999999999984 3222 23333445
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
....+.+|...|.+++|+ |++++|++++.|++|++||++++ .++..+.+|...|.+++|+| ++++|+
T Consensus 240 ~~~~~~~h~~~v~~~~~s---p~~~~l~s~s~D~~v~iwd~~~~---------~~~~~~~~h~~~v~~v~~s~-~g~~l~ 306 (321)
T 3ow8_A 240 LAGTLSGHASWVLNVAFC---PDDTHFVSSSSDKSVKVWDVGTR---------TCVHTFFDHQDQVWGVKYNG-NGSKIV 306 (321)
T ss_dssp EEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred eeEEEcCCCCceEEEEEC---CCCCEEEEEeCCCcEEEEeCCCC---------EEEEEEcCCCCcEEEEEECC-CCCEEE
Confidence 567888999999999999 89999999999999999999997 66677889999999999998 889999
Q ss_pred EeeCCceEEEEeCC
Q 025649 237 VCDTSKVVKVYSIS 250 (250)
Q Consensus 237 s~~~d~~i~vw~~~ 250 (250)
+++.||.|++||++
T Consensus 307 s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 307 SVGDDQEIHIYDCP 320 (321)
T ss_dssp EEETTCCEEEEECC
T ss_pred EEeCCCeEEEEeCC
Confidence 99999999999974
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.9e-39 Score=250.69 Aligned_cols=217 Identities=16% Similarity=0.232 Sum_probs=186.8
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|+|||+.+++....++ +|.+.|.+++|+|+++ +|++|+.|++|++||+.+++++..+. + |...|
T Consensus 131 ~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~~~~~~~-~------------h~~~V 195 (410)
T 1vyh_C 131 TIKVWDYETGDFERTLK-GHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFECIRTMH-G------------HDHNV 195 (410)
T ss_dssp CEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSCEEECCC-C------------CSSCE
T ss_pred eEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEEc-C------------CCCCE
Confidence 58999999999999999 9999999999999999 89999999999999999888877775 3 57889
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLH 156 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 156 (250)
.+++|+| ++++|++|+.|++|++||++++.....+..+ ...+.++.++|++.++++ +..| .++....+
T Consensus 196 ~~v~~~p------~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~g~~l~s-~s~D~~v~vwd~~~~~ 267 (410)
T 1vyh_C 196 SSVSIMP------NGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPNQDGTLIAS-CSNDQTVRVWVVATKE 267 (410)
T ss_dssp EEEEECS------SSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSEEEE-EETTSCEEEEETTTCC
T ss_pred EEEEEeC------CCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-CccEEEEEECCCCCEEEE-EcCCCeEEEEECCCCc
Confidence 9999999 9999999999999999999999887776554 477899999999999984 3322 23333445
Q ss_pred eeccccCccccEEEEEeecCCC-----------------CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC
Q 025649 157 LDYSVGGHTAAASCVAFSMFGE-----------------RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 219 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~-----------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 219 (250)
+...+.+|...|.+++|+|... .+.+|++|+.|+.|++||++++ .++..+.+|.
T Consensus 268 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---------~~~~~~~~h~ 338 (410)
T 1vyh_C 268 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---------MCLMTLVGHD 338 (410)
T ss_dssp EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---------EEEEEEECCS
T ss_pred eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---------ceEEEEECCC
Confidence 5667889999999999994110 1679999999999999999997 6667788999
Q ss_pred CceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 220 KKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 220 ~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
..|.+++|+| ++++|++|+.||.|++||++
T Consensus 339 ~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 339 NWVRGVLFHS-GGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp SCEEEEEECS-SSSCEEEEETTTEEEEECCT
T ss_pred CcEEEEEEcC-CCCEEEEEeCCCeEEEEECC
Confidence 9999999998 89999999999999999973
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.9e-39 Score=241.22 Aligned_cols=214 Identities=21% Similarity=0.252 Sum_probs=184.7
Q ss_pred CcEEEEccccee--eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~~--~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|+|||+.+++. ...+. +|...|.+++|++++. ++++++.|++|++||+.+++.+..+..+ +.
T Consensus 59 ~v~vW~~~~~~~~~~~~l~-gh~~~v~~~~~~~~~~-~l~s~s~D~~i~lWd~~~~~~~~~~~~~-------------~~ 123 (321)
T 3ow8_A 59 LVKVWKWRDERLDLQWSLE-GHQLGVVSVDISHTLP-IAASSSLDAHIRLWDLENGKQIKSIDAG-------------PV 123 (321)
T ss_dssp CEEEEEEETTEEEEEEEEC-CCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECC-------------TT
T ss_pred CEEEEECCCCCeeeeeeec-cCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCEEEEEeCC-------------Cc
Confidence 689999987653 45688 9999999999999999 8999999999999999999888877633 56
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKR 154 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 154 (250)
.+.+++|+| ++++|++++.|+.|++||+++++....+... ...+.+++|+|+++++++ +..+ .++...
T Consensus 124 ~~~~~~~sp------dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~las-g~~dg~i~iwd~~~ 195 (321)
T 3ow8_A 124 DAWTLAFSP------DSQYLATGTHVGKVNIFGVESGKKEYSLDTR-GKFILSIAYSPDGKYLAS-GAIDGIINIFDIAT 195 (321)
T ss_dssp CCCCEEECT------TSSEEEEECTTSEEEEEETTTCSEEEEEECS-SSCEEEEEECTTSSEEEE-EETTSCEEEEETTT
T ss_pred cEEEEEECC------CCCEEEEEcCCCcEEEEEcCCCceeEEecCC-CceEEEEEECCCCCEEEE-EcCCCeEEEEECCC
Confidence 788999999 9999999999999999999998877665544 367899999999999984 3322 223344
Q ss_pred eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649 155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 234 (250)
.+.+..+.+|...|.+++|+ |++++|++|+.|+.|++||++++ .....+.+|...|.+++|+| ++.+
T Consensus 196 ~~~~~~~~~h~~~v~~l~~s---pd~~~l~s~s~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~~~~sp-~~~~ 262 (321)
T 3ow8_A 196 GKLLHTLEGHAMPIRSLTFS---PDSQLLVTASDDGYIKIYDVQHA---------NLAGTLSGHASWVLNVAFCP-DDTH 262 (321)
T ss_dssp TEEEEEECCCSSCCCEEEEC---TTSCEEEEECTTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECT-TSSE
T ss_pred CcEEEEEcccCCceeEEEEc---CCCCEEEEEcCCCeEEEEECCCc---------ceeEEEcCCCCceEEEEECC-CCCE
Confidence 55667888999999999999 89999999999999999999987 56677889999999999998 8899
Q ss_pred EEEeeCCceEEEEeCC
Q 025649 235 LVVCDTSKVVKVYSIS 250 (250)
Q Consensus 235 l~s~~~d~~i~vw~~~ 250 (250)
|++++.|+.|++||++
T Consensus 263 l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 263 FVSSSSDKSVKVWDVG 278 (321)
T ss_dssp EEEEETTSCEEEEETT
T ss_pred EEEEeCCCcEEEEeCC
Confidence 9999999999999974
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.9e-39 Score=239.09 Aligned_cols=217 Identities=14% Similarity=0.218 Sum_probs=180.3
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|+|||+++++.+..+. +|..+|.+++|+|+++ +|++|+.|++|++||+.+++.+..+. + |...|
T Consensus 36 ~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~-~------------h~~~v 100 (304)
T 2ynn_A 36 RVELWNYETQVEVRSIQ-VTETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEKVVDFE-A------------HPDYI 100 (304)
T ss_dssp EEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCCEEEEEE-C------------CSSCE
T ss_pred cEEEEECCCCceeEEee-ccCCcEEEEEEeCCCC-EEEEECCCCEEEEEECCCCcEEEEEe-C------------CCCcE
Confidence 48999999999999999 9999999999999999 89999999999999999999888876 3 57899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc-cceeEEEeeeeee----ccCeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEILDQ----SGGKRL 155 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~ 155 (250)
.+++|+| ++++|++|+.|++|++||++++.........+...+.+++|+| ++..+++ +..|. ++....
T Consensus 101 ~~~~~~~------~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s-gs~D~~v~iwd~~~~ 173 (304)
T 2ynn_A 101 RSIAVHP------TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS-GCLDRTVKVWSLGQS 173 (304)
T ss_dssp EEEEECS------SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE-EETTSEEEEEETTCS
T ss_pred EEEEEcC------CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE-EeCCCeEEEEECCCC
Confidence 9999999 9999999999999999999987555444445568899999999 5677773 33222 222111
Q ss_pred eeecc-ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649 156 HLDYS-VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 156 ~~~~~-~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 234 (250)
..... ..+|...+..+.|+|. +++++|++|+.|++|++||++++ .++..+.+|...|..++|+| ++.+
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~s~D~~i~iWd~~~~---------~~~~~~~~h~~~v~~~~~~p-~~~~ 242 (304)
T 2ynn_A 174 TPNFTLTTGQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTK---------SCVATLEGHMSNVSFAVFHP-TLPI 242 (304)
T ss_dssp SCSEEEECCCTTCEEEEEECCS-TTCCEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECS-SSSE
T ss_pred CccceeccCCcCcEEEEEEEEc-CCCCEEEEEcCCCeEEEEeCCCC---------ccceeeCCCCCCEEEEEECC-CCCE
Confidence 12222 2356678999999842 37789999999999999999997 66778889999999999998 8889
Q ss_pred EEEeeCCceEEEEeCC
Q 025649 235 LVVCDTSKVVKVYSIS 250 (250)
Q Consensus 235 l~s~~~d~~i~vw~~~ 250 (250)
|++|+.||.|++||++
T Consensus 243 l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEEEETTSCEEEEETT
T ss_pred EEEEcCCCeEEEEECC
Confidence 9999999999999974
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.7e-39 Score=249.04 Aligned_cols=214 Identities=18% Similarity=0.210 Sum_probs=185.0
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|+|||+.+++++..+. +|...|.+++|+|++. +|++|+.|++|++||+++++++..+. + |...|
T Consensus 173 ~i~iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~-~------------h~~~v 237 (410)
T 1vyh_C 173 TIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFT-G------------HREWV 237 (410)
T ss_dssp CCCEEETTSSCEEECCC-CCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEE-C------------CSSCE
T ss_pred eEEEEeCCCCceeEEEc-CCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEe-C------------CCccE
Confidence 58999999999999999 9999999999999999 89999999999999999999888876 3 57889
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeeccc--------------------cee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV--------------------NIR 140 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 140 (250)
.++.++| ++++|++|+.|+.|++||++++.....+..+ ...+.+++|+|+ |.+
T Consensus 238 ~~~~~~~------~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 310 (410)
T 1vyh_C 238 RMVRPNQ------DGTLIASCSNDQTVRVWVVATKECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKPGPF 310 (410)
T ss_dssp EEEEECT------TSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC-------CCE
T ss_pred EEEEECC------CCCEEEEEcCCCeEEEEECCCCceeeEecCC-CceEEEEEEcCcccccchhhhccccccccCCCCCE
Confidence 9999998 9999999999999999999998877666544 478899999996 445
Q ss_pred EEEeeeee----eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee
Q 025649 141 DAEMEILD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 216 (250)
Q Consensus 141 ~~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 216 (250)
+++ +..| .++....+++..+.+|...|.+++|+ |+|++|++|+.||.|++||++++ +++..+.
T Consensus 311 l~s-gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~---~~g~~l~s~s~D~~i~vwd~~~~---------~~~~~~~ 377 (410)
T 1vyh_C 311 LLS-GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH---SGGKFILSCADDKTLRVWDYKNK---------RCMKTLN 377 (410)
T ss_dssp EEE-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC---SSSSCEEEEETTTEEEEECCTTS---------CCCEEEE
T ss_pred EEE-EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEc---CCCCEEEEEeCCCeEEEEECCCC---------ceEEEEc
Confidence 663 3322 23334455677888999999999999 89999999999999999999887 5666778
Q ss_pred ccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 217 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 217 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+|...|++++|+| ++.+|++|+.||.|++|+++
T Consensus 378 ~h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 378 AHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CCSSCEEEEEECS-SSSCEEEEETTSEEEEEC--
T ss_pred CCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Confidence 9999999999998 88899999999999999975
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-38 Score=243.65 Aligned_cols=216 Identities=15% Similarity=0.133 Sum_probs=171.5
Q ss_pred CcEEEEcccceeee----eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649 1 MWQIIDIRQHCLYK----SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 1 ti~iwd~~~~~~~~----~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
+|+|||+.+++... ... +|.+.|++++|+|+++ +|++|+.|++|++||+++++.+..+.. |
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~-------------h 180 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKY-EHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNA-------------H 180 (357)
T ss_dssp CEEEC--------CCCCEEEC-CCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECC-------------C
T ss_pred EEEEeeccccceeEEEeeccC-CCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcC-------------C
Confidence 58999999887543 234 7999999999999999 899999999999999999988887763 4
Q ss_pred CCceeEEecCCCcccCCCC-CEEEEEeCCCeEEEEeCCCceeEeeccC-CCCCCccceeecccceeEEEeeeeee----c
Q 025649 77 PAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDAEMEILDQ----S 150 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 150 (250)
...|.+++|+| ++ .++++++.|+.|++||+++++....... .....+.+++|+|++..++..+..+. +
T Consensus 181 ~~~v~~v~~s~------~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w 254 (357)
T 4g56_B 181 SSEVNCVAACP------GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV 254 (357)
T ss_dssp SSCEEEEEECT------TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred CCCEEEEEEcc------CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEE
Confidence 78899999998 55 5889999999999999999877655443 34467899999998654443444332 3
Q ss_pred cCeeeeeeccccCccccEEEEEeecCCCCC-cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649 151 GGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 229 (250)
Q Consensus 151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 229 (250)
+....+.+..+.+|...|++++|+ |++ ++|++|+.|++|+|||++++ +++ ...+|...|++++|+|
T Consensus 255 d~~~~~~~~~~~~~~~~v~~l~~s---p~~~~~lasgs~D~~i~iwd~~~~---------~~~-~~~~H~~~V~~vafsP 321 (357)
T 4g56_B 255 NIKNPDSAQTSAVHSQNITGLAYS---YHSSPFLASISEDCTVAVLDADFS---------EVF-RDLSHRDFVTGVAWSP 321 (357)
T ss_dssp ESSCGGGCEEECCCSSCEEEEEEC---SSSSCCEEEEETTSCEEEECTTSC---------EEE-EECCCSSCEEEEEECS
T ss_pred ECCCCcEeEEEeccceeEEEEEEc---CCCCCEEEEEeCCCEEEEEECCCC---------cEe-EECCCCCCEEEEEEeC
Confidence 344455667888999999999999 665 68999999999999999986 443 4458999999999998
Q ss_pred CCCCeEEEeeCCceEEEEeCC
Q 025649 230 TESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 230 ~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.++.+|++|+.||+|++|+++
T Consensus 322 ~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 322 LDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp SSTTEEEEEETTSCEEEEECC
T ss_pred CCCCEEEEEcCCCeEEEEECC
Confidence 789999999999999999974
No 8
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-37 Score=238.33 Aligned_cols=216 Identities=18% Similarity=0.229 Sum_probs=182.1
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|+|||+++++.+..+. +|...|.+++|+|+++ +|++|+.|++|++||+++++....+. +...+
T Consensus 146 ~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--------------~~~~v 209 (393)
T 1erj_A 146 LIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLS--------------IEDGV 209 (393)
T ss_dssp CEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE--------------CSSCE
T ss_pred eEEEEECCCCcEEEEEc-cCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEE--------------cCCCc
Confidence 58999999999999999 9999999999999999 89999999999999999988777766 34678
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc------CCCCCCccceeecccceeEEE------eeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK------STTKPLKGSQSTSKVNIRDAE------MEILD 148 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~------~~~~~ 148 (250)
.+++++| .++++|++|+.|+.|++||+++++...... ..+...+.+++|+|+++++++ +..|+
T Consensus 210 ~~~~~~~-----~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 210 TTVAVSP-----GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp EEEEECS-----TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEEEEC-----CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 9999997 578999999999999999999987665542 234578999999999999984 22344
Q ss_pred eccCe---------eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC
Q 025649 149 QSGGK---------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 219 (250)
Q Consensus 149 ~~~~~---------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 219 (250)
..... ...+...+.+|...|.+++|+ |++++|++|+.|+.|++||++++ ..+..+.+|.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~l~sgs~D~~v~iwd~~~~---------~~~~~l~~h~ 352 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT---QNDEYILSGSKDRGVLFWDKKSG---------NPLLMLQGHR 352 (393)
T ss_dssp C---------------CEEEEEECCSSCEEEEEEC---GGGCEEEEEETTSEEEEEETTTC---------CEEEEEECCS
T ss_pred CCCCCCcccccCCCCCcceEEEecccCcEEEEEEC---CCCCEEEEEeCCCeEEEEECCCC---------eEEEEECCCC
Confidence 33211 123445677899999999999 89999999999999999999997 5667788999
Q ss_pred CceeEEEecC-----CCCCeEEEeeCCceEEEEeC
Q 025649 220 KKVNWLCTTP-----TESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 220 ~~v~~~~~~~-----~~~~~l~s~~~d~~i~vw~~ 249 (250)
..|.+++|++ +++.+|++|+.||.|++|++
T Consensus 353 ~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 353 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred CCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 9999999986 26789999999999999996
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-36 Score=227.83 Aligned_cols=216 Identities=16% Similarity=0.142 Sum_probs=176.9
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+.+++.+..+. +|.+.|.+++|+|+++ +|++|+.|++|++||++++..+.....+ |...|
T Consensus 78 ~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~------------h~~~v 143 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEG------------HEHFV 143 (304)
T ss_dssp EEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECC------------CCSCE
T ss_pred EEEEEECCCCcEEEEEe-CCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcc------------cCCcE
Confidence 48999999999999999 9999999999999999 8999999999999999887543332223 67889
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc--cceeEEEeee----eeeccCee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK--VNIRDAEMEI----LDQSGGKR 154 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~ 154 (250)
.+++|+| .++.+|++|+.|+.|++||++.+.........+...+..+.++| ++.++++ +. ...++...
T Consensus 144 ~~v~~~p-----~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 144 MCVAFNP-----KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT-ASDDLTIKIWDYQT 217 (304)
T ss_dssp EEEEECT-----TCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE-EETTSEEEEEETTT
T ss_pred EEEEECC-----CCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE-EcCCCeEEEEeCCC
Confidence 9999998 35789999999999999999887766655555556788888876 6777774 32 22333444
Q ss_pred eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC-
Q 025649 155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE- 233 (250)
Q Consensus 155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 233 (250)
.+++..+.+|...|.+++|+ |++++|++|+.||+|++||++++ +++..+..|...+++++++|.++.
T Consensus 218 ~~~~~~~~~h~~~v~~~~~~---p~~~~l~s~s~Dg~i~iWd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (304)
T 2ynn_A 218 KSCVATLEGHMSNVSFAVFH---PTLPIIISGSEDGTLKIWNSSTY---------KVEKTLNVGLERSWCIATHPTGRKN 285 (304)
T ss_dssp TEEEEEEECCSSCEEEEEEC---SSSSEEEEEETTSCEEEEETTTC---------CEEEEECCSSSSEEEEEECTTCGGG
T ss_pred CccceeeCCCCCCEEEEEEC---CCCCEEEEEcCCCeEEEEECCCC---------ceeeeccCCCccEEEEEECCCCCce
Confidence 56677889999999999999 89999999999999999999997 666777889999999999985544
Q ss_pred eEEEeeCCceEEEEeC
Q 025649 234 NLVVCDTSKVVKVYSI 249 (250)
Q Consensus 234 ~l~s~~~d~~i~vw~~ 249 (250)
++++|+.|| +.+|++
T Consensus 286 ~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 286 YIASGFDNG-FTVLSL 300 (304)
T ss_dssp CEEEEETTE-EEEEEC
T ss_pred EEEEecCCc-eEEEEe
Confidence 477777665 667765
No 10
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.4e-36 Score=232.75 Aligned_cols=215 Identities=8% Similarity=0.064 Sum_probs=166.0
Q ss_pred CcEEEEcccceee----eeec----cCCCCCeeeEEEcCCCCeEEE--EecCCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649 1 MWQIIDIRQHCLY----KSLR----AGHSSICSSVQFIPWKPWEVI--SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN 70 (250)
Q Consensus 1 ti~iwd~~~~~~~----~~l~----~~h~~~v~~l~~~~~~~~~l~--s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 70 (250)
++|+|++.+.+.. .... ..+...+.+++|+|||+ +|+ +++.|++|+|||+++++++..+.
T Consensus 105 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~-~la~as~~~d~~i~iwd~~~~~~~~~~~--------- 174 (365)
T 4h5i_A 105 HLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT-VAAIASSKVPAIMRIIDPSDLTEKFEIE--------- 174 (365)
T ss_dssp CEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS-CEEEEESCSSCEEEEEETTTTEEEEEEE---------
T ss_pred cEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC-EEEEEECCCCCEEEEeECCCCcEEEEeC---------
Confidence 4789998754321 1111 03456689999999999 654 56689999999999998887776
Q ss_pred CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe-eccCCCCCCccceeecccceeEEEeee---
Q 025649 71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKVNIRDAEMEI--- 146 (250)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 146 (250)
+...|.+++|+| +++++++++.++ +.+|+..++.... .....+...+.+++|+|+++.+++...
T Consensus 175 -----~~~~V~~v~fsp------dg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~ 242 (365)
T 4h5i_A 175 -----TRGEVKDLHFST------DGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG 242 (365)
T ss_dssp -----CSSCCCEEEECT------TSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred -----CCCceEEEEEcc------CCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc
Confidence 457799999999 999999998655 6666666655543 344445577899999999999984321
Q ss_pred -------eeeccC-eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee-eec
Q 025649 147 -------LDQSGG-KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NIN 217 (250)
Q Consensus 147 -------~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~ 217 (250)
++.... ........+.+|...|++++|+ |+|++||+|+.|++|+|||++++ +++.. ..+
T Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~S---pdg~~lasgs~D~~V~iwd~~~~---------~~~~~~~~g 310 (365)
T 4h5i_A 243 KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVD---MKGELAVLASNDNSIALVKLKDL---------SMSKIFKQA 310 (365)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEEC---TTSCEEEEEETTSCEEEEETTTT---------EEEEEETTS
T ss_pred ceeEEeecccccceecceeeeeecCCCCCeEeEEEC---CCCCceEEEcCCCEEEEEECCCC---------cEEEEecCc
Confidence 111111 1222345677899999999999 89999999999999999999997 55555 468
Q ss_pred cCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 218 LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 218 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
|...|++++|+| ||++|++||.|++|+||+++
T Consensus 311 H~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 311 HSFAITEVTISP-DSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp SSSCEEEEEECT-TSCEEEEEETTSEEEEEECC
T ss_pred ccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcC
Confidence 999999999998 99999999999999999984
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.5e-36 Score=226.73 Aligned_cols=221 Identities=15% Similarity=0.204 Sum_probs=172.4
Q ss_pred CcEEEEccc-----ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649 1 MWQIIDIRQ-----HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 1 ti~iwd~~~-----~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
+|++||+.+ +..+..++ +|...|.+++|+|+++ +|++|+.|++|++||+++++.+..+. +
T Consensus 41 ~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~-~l~s~s~D~~v~~wd~~~~~~~~~~~-~------------ 105 (319)
T 3frx_A 41 TLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGA-YALSASWDKTLRLWDVATGETYQRFV-G------------ 105 (319)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE-C------------
T ss_pred cEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCeeEEEc-c------------
Confidence 589999864 34577889 9999999999999999 89999999999999999998887776 3
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccce------eEEEeeeee-
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI------RDAEMEILD- 148 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~- 148 (250)
|...|.+++|+| ++++|++|+.|++|++||++... ...+.. +...+.++.++|.+. .+++ +..|
T Consensus 106 h~~~v~~~~~~~------~~~~l~s~s~D~~i~vwd~~~~~-~~~~~~-h~~~v~~~~~~~~~~~~~~~~~l~s-~~~d~ 176 (319)
T 3frx_A 106 HKSDVMSVDIDK------KASMIISGSRDKTIKVWTIKGQC-LATLLG-HNDWVSQVRVVPNEKADDDSVTIIS-AGNDK 176 (319)
T ss_dssp CSSCEEEEEECT------TSCEEEEEETTSCEEEEETTSCE-EEEECC-CSSCEEEEEECCC------CCEEEE-EETTS
T ss_pred CCCcEEEEEEcC------CCCEEEEEeCCCeEEEEECCCCe-EEEEec-cCCcEEEEEEccCCCCCCCccEEEE-EeCCC
Confidence 578899999998 99999999999999999997543 333333 346788999988543 5653 3322
Q ss_pred ---eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccc----------------
Q 025649 149 ---QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN---------------- 209 (250)
Q Consensus 149 ---~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------------- 209 (250)
.++....+....+.+|...|.+++|+ |++++|++|+.||.|++||+++++........
T Consensus 177 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~s---p~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la 253 (319)
T 3frx_A 177 MVKAWNLNQFQIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253 (319)
T ss_dssp CEEEEETTTTEEEEEECCCCSCEEEEEEC---TTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEE
T ss_pred EEEEEECCcchhheeecCCCCcEEEEEEc---CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEE
Confidence 22333444556788999999999999 89999999999999999999887544211100
Q ss_pred ---------------ceeeee--------eccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 210 ---------------DLLIKN--------INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 210 ---------------~~~~~~--------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
..+... ..|...+.+++|+| ||++|++|+.||.|++||+
T Consensus 254 ~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 254 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp EEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT-TSSEEEEEETTSCEEEEEE
T ss_pred EEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC-CCCEEEEeecCceEEEEEE
Confidence 001111 13456688999998 9999999999999999997
No 12
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-35 Score=225.67 Aligned_cols=209 Identities=15% Similarity=0.254 Sum_probs=175.3
Q ss_pred CcEEEEcccc----eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649 1 MWQIIDIRQH----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 1 ti~iwd~~~~----~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
+|++||+.++ +....+. +|.+.|.++.|++++ .+++++.|++|++||+++++.+..+. + |
T Consensus 120 ~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~-~------------h 183 (340)
T 1got_B 120 ICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFT-G------------H 183 (340)
T ss_dssp EEEEEETTTCSBSCEEEEEEE-CCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEEC-C------------C
T ss_pred eEEEEECccCCCcceeEEEec-CCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEc-C------------C
Confidence 3789999865 4566788 999999999999987 48999999999999999998877776 3 5
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeeec
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQS 150 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 150 (250)
...|.+++|+| +++++++|+.|+.|++||++++.....+..+ ...+.+++|+|+++++++. ..||..
T Consensus 184 ~~~v~~~~~~~------~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 184 TGDVMSLSLAP------DTRLFVSGACDASAKLWDVREGMCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp SSCEEEEEECT------TSSEEEEEETTSCEEEEETTTCSEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCceEEEEECC------CCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-cCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 78899999999 9999999999999999999998877666544 4789999999999999842 233333
Q ss_pred cCeeeeeeccc--cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649 151 GGKRLHLDYSV--GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 228 (250)
Q Consensus 151 ~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 228 (250)
... .+..+ ..+...|.+++|+ |+|++|++|+.|+.|++||+.++ ..+..+.+|...|.+++|+
T Consensus 257 ~~~---~~~~~~~~~~~~~v~~~~~s---~~g~~l~~g~~d~~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~s 321 (340)
T 1got_B 257 ADQ---ELMTYSHDNIICGITSVSFS---KSGRLLLAGYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCLGVT 321 (340)
T ss_dssp TTE---EEEEECCTTCCSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEEC
T ss_pred CCc---EEEEEccCCcccceEEEEEC---CCCCEEEEECCCCeEEEEEcccC---------cEeeEeecCCCcEEEEEEc
Confidence 222 22222 3344579999999 89999999999999999999987 5666788999999999999
Q ss_pred CCCCCeEEEeeCCceEEEEe
Q 025649 229 PTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 229 ~~~~~~l~s~~~d~~i~vw~ 248 (250)
| ++.+|++|+.|+.|+|||
T Consensus 322 ~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 322 D-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp T-TSSCEEEEETTSCEEEEC
T ss_pred C-CCCEEEEEcCCccEEecC
Confidence 8 899999999999999997
No 13
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.2e-36 Score=225.08 Aligned_cols=221 Identities=16% Similarity=0.161 Sum_probs=169.6
Q ss_pred CcEEEEcccce--eeeeeccCCCCCeeeEEEcCC--CCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649 1 MWQIIDIRQHC--LYKSLRAGHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 1 ti~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
+|+|||+.+++ .+..++ +|.+.|.+++|+|. +. +|++|+.|++|++||+++++........ .|
T Consensus 36 ~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~-----------~h 102 (316)
T 3bg1_A 36 SVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGN-ILASCSYDRKVIIWREENGTWEKSHEHA-----------GH 102 (316)
T ss_dssp EEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSS-CEEEEETTSCEEEECCSSSCCCEEEEEC-----------CC
T ss_pred eEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCC-EEEEEECCCEEEEEECCCCcceEEEEcc-----------CC
Confidence 58999998764 567889 99999999999863 67 8999999999999999887532222211 16
Q ss_pred CCceeEEecCCCcccCCC--CCEEEEEeCCCeEEEEeCCCceeE--eeccCCCCCCccceeeccc---------------
Q 025649 77 PAFVHAIAIPDADMLDKT--NKICVVAKGDGVVDVINIESELNI--SRSKSTTKPLKGSQSTSKV--------------- 137 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~--------------- 137 (250)
...|.+++|+| + +.+|++|+.|+.|++||++.+... ......+...+.+++|+|+
T Consensus 103 ~~~V~~v~~~p------~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 176 (316)
T 3bg1_A 103 DSSVNSVCWAP------HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKP 176 (316)
T ss_dssp SSCCCEEEECC------TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCC
T ss_pred CCceEEEEECC------CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCc
Confidence 78899999998 5 789999999999999999875322 2333344567889999987
Q ss_pred --ceeEEE------eeeeeeccCeeeeeeccccCccccEEEEEeecCCCCC----cEEEEeeCCCeEEEEecCCCcceec
Q 025649 138 --NIRDAE------MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG----KYLISGGNDKLVKVWDCSRFQGVQT 205 (250)
Q Consensus 138 --~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~ 205 (250)
++++++ +..|+.......+.+..+.+|...|.+++|+ |++ ++|++|+.|++|++||+.......
T Consensus 177 ~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s---p~~~~~~~~las~s~D~~v~iw~~~~~~~~~- 252 (316)
T 3bg1_A 177 NYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA---PSIGLPTSTIASCSQDGRVFIWTCDDASSNT- 252 (316)
T ss_dssp CCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC---CCSSCSCCEEEEEETTCEEEEEECSSTTCCC-
T ss_pred cccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec---CCCCCCCceEEEEcCCCeEEEEEccCccccc-
Confidence 356663 2234433222234567889999999999999 665 899999999999999998732100
Q ss_pred ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 206 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.....+..|...|++++|+| ++++|++++.|+.|++|+.
T Consensus 253 ----~~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 253 ----WSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp ----CBCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEE
T ss_pred ----hhhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEE
Confidence 11223457889999999998 8899999999999999985
No 14
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.2e-35 Score=220.19 Aligned_cols=220 Identities=18% Similarity=0.218 Sum_probs=168.8
Q ss_pred CcEEEEccc--ceeeeeeccCCCCCeeeEEEcCC--CCeEEEEecCCCeEEEEEccCCCC--ccceecCCCCCCCCCCcc
Q 025649 1 MWQIIDIRQ--HCLYKSLRAGHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQC 74 (250)
Q Consensus 1 ti~iwd~~~--~~~~~~l~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~ 74 (250)
+|+|||+++ .+.+.++. +|.++|.+++|+|. ++ +|++|+.|++|++||+++++. +..+. .
T Consensus 32 ~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~----------- 97 (297)
T 2pm7_B 32 TIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGT-ILASCSYDGKVMIWKEENGRWSQIAVHA-V----------- 97 (297)
T ss_dssp CEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCS-EEEEEETTTEEEEEEBSSSCBCCCEEEC-C-----------
T ss_pred EEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCC-EEEEEcCCCEEEEEEcCCCceEEEEEee-c-----------
Confidence 689999974 47788999 99999999999864 67 899999999999999987752 33332 2
Q ss_pred cCCCceeEEecCCCcccCCC--CCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeeccc-------------c
Q 025649 75 YNPAFVHAIAIPDADMLDKT--NKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKV-------------N 138 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------~ 138 (250)
|...|.+++|+| + +.+|++++.|+.|++||++.+... ......+...+.+++|+|+ +
T Consensus 98 -h~~~v~~v~~~p------~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~ 170 (297)
T 2pm7_B 98 -HSASVNSVQWAP------HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 170 (297)
T ss_dssp -CSSCEEEEEECC------GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------C
T ss_pred -CCCceeEEEeCc------CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCc
Confidence 577899999998 5 889999999999999999875321 2222334578899999997 4
Q ss_pred eeEEE------eeeeeeccCe-eeeeeccccCccccEEEEEeecCCCC---CcEEEEeeCCCeEEEEecCCCcceecccc
Q 025649 139 IRDAE------MEILDQSGGK-RLHLDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQGVQTSIN 208 (250)
Q Consensus 139 ~~~~~------~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 208 (250)
+++++ +..|+..... .......+.+|...|.+++|+ |+ +++|++++.|++|++||++.......
T Consensus 171 ~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~s---p~~~~~~~las~s~D~~v~iWd~~~~~~~~~--- 244 (297)
T 2pm7_B 171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS---PTVLLRSYMASVSQDRTCIIWTQDNEQGPWK--- 244 (297)
T ss_dssp CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC---CCCSSSEEEEEEETTSCEEEEEESSTTSCCE---
T ss_pred ceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEEC---CCCCCceEEEEEECCCcEEEEEeCCCCCccc---
Confidence 56763 2234433322 233556788999999999999 66 58999999999999999987421100
Q ss_pred cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 209 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
........|...|.+++|+| ++++|++++.|+.|++|+.
T Consensus 245 -~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 245 -KTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp -EEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEEE
T ss_pred -eeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEEE
Confidence 01111246788999999998 8999999999999999985
No 15
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.6e-36 Score=228.46 Aligned_cols=203 Identities=9% Similarity=0.108 Sum_probs=159.1
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
.|...|.+++|+|++ .|++|+.||+|+|||+++++.+..+... ...|...|.+++|+| ++++|
T Consensus 80 ~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~~~~~~---------~~~H~~~V~~v~~sp------dg~~l 142 (344)
T 4gqb_B 80 QTEAGVADLTWVGER--GILVASDSGAVELWELDENETLIVSKFC---------KYEHDDIVSTVSVLS------SGTQA 142 (344)
T ss_dssp EESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSCEEEEEE---------EECCSSCEEEEEECT------TSSEE
T ss_pred ccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCceeEeecc---------ccCCCCCEEEEEECC------CCCEE
Confidence 367789999999986 5889999999999999998876655421 112788999999999 99999
Q ss_pred EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeeeeeeccc--cCccccEEEEE
Q 025649 99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDYSV--GGHTAAASCVA 172 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~h~~~v~~~~ 172 (250)
++|+.|++|++||+++++.+..+..+ ...+.+++|+|++..++..+..|. ++....+....+ ..|...+.+++
T Consensus 143 ~sgs~d~~i~iwd~~~~~~~~~~~~h-~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 221 (344)
T 4gqb_B 143 VSGSKDICIKVWDLAQQVVLSSYRAH-AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA 221 (344)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCc-CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee
Confidence 99999999999999999888777654 478999999999865433333332 222223333333 34566799999
Q ss_pred eecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 173 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 173 ~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
|+| .++++|++|+.||.|++||++++ +++..+.+|...|++++|+|...++|++|+.|++|+|||++
T Consensus 222 ~~p--~~~~~l~sg~~dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 222 WHP--QQSEVFVFGDENGTVSLVDTKST---------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp ECS--SCTTEEEEEETTSEEEEEESCC-----------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred ecC--CCCcceEEeccCCcEEEEECCCC---------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence 994 36789999999999999999997 66677889999999999998434689999999999999974
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.4e-36 Score=226.97 Aligned_cols=209 Identities=14% Similarity=0.108 Sum_probs=173.0
Q ss_pred cceeeeeeccCCCC-CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccc--eecCCCCCCCCCCcccCCCceeEEec
Q 025649 9 QHCLYKSLRAGHSS-ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI--VNFGLPENNGNAGQCYNPAFVHAIAI 85 (250)
Q Consensus 9 ~~~~~~~l~~~h~~-~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~ 85 (250)
..+++.+++ +|.. .|.+++|+|+++ +|++|+.|++|++||+.+++.... +..+ |...|.+++|
T Consensus 4 ~~~~~~~~~-~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~~~~~~~------------h~~~v~~~~~ 69 (345)
T 3fm0_A 4 SLVLLGRVP-AHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEG------------HQRTVRKVAW 69 (345)
T ss_dssp CEEEEEEEC-CSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEEEEECSS------------CSSCEEEEEE
T ss_pred cEEEeeeec-CCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceeeeeeccc------------cCCcEEEEEE
Confidence 346778899 9988 999999999999 899999999999999987753322 2223 6789999999
Q ss_pred CCCcccCCCCCEEEEEeCCCeEEEEeCCCcee--EeeccCCCCCCccceeecccceeEEE------eeeeeeccCeeeee
Q 025649 86 PDADMLDKTNKICVVAKGDGVVDVINIESELN--ISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKRLHL 157 (250)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 157 (250)
+| ++++|++|+.|+.+++||+..+.. ...+. .+...+.+++|+|+++++++ +..|+........+
T Consensus 70 sp------~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~ 142 (345)
T 3fm0_A 70 SP------CGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142 (345)
T ss_dssp CT------TSSEEEEEETTSCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred CC------CCCEEEEEECCCcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE
Confidence 99 999999999999999999987643 33333 34578999999999999985 23455544445556
Q ss_pred eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE
Q 025649 158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV 237 (250)
Q Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 237 (250)
+..+.+|...|.+++|+ |++++|++|+.|+.|++||.+.+.. .....+.+|...|++++|+| ++++|++
T Consensus 143 ~~~~~~h~~~v~~~~~~---p~~~~l~s~s~d~~i~~w~~~~~~~-------~~~~~~~~h~~~v~~l~~sp-~g~~l~s 211 (345)
T 3fm0_A 143 VSVLNSHTQDVKHVVWH---PSQELLASASYDDTVKLYREEEDDW-------VCCATLEGHESTVWSLAFDP-SGQRLAS 211 (345)
T ss_dssp EEEECCCCSCEEEEEEC---SSSSCEEEEETTSCEEEEEEETTEE-------EEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred EEEecCcCCCeEEEEEC---CCCCEEEEEeCCCcEEEEEecCCCE-------EEEEEecCCCCceEEEEECC-CCCEEEE
Confidence 77888999999999999 8999999999999999999987532 23456789999999999998 8999999
Q ss_pred eeCCceEEEEeC
Q 025649 238 CDTSKVVKVYSI 249 (250)
Q Consensus 238 ~~~d~~i~vw~~ 249 (250)
|+.|+.|++|++
T Consensus 212 ~s~D~~v~iW~~ 223 (345)
T 3fm0_A 212 CSDDRTVRIWRQ 223 (345)
T ss_dssp EETTSCEEEEEE
T ss_pred EeCCCeEEEecc
Confidence 999999999984
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.7e-36 Score=242.72 Aligned_cols=212 Identities=13% Similarity=0.106 Sum_probs=173.1
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc--ceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK--IVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|+|||+.+++....+. +|...|++++|+|+|+ +|++|+.||+|+|||+.+++... .+. + |..
T Consensus 40 ~v~l~~~~~~~~~~~~~-~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~~~~-~------------~~~ 104 (611)
T 1nr0_A 40 SVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKTTIP-V------------FSG 104 (611)
T ss_dssp EEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEEEEE-C------------SSS
T ss_pred EEEEecCCCcccCeEec-CCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeEeec-c------------cCC
Confidence 47899999999999999 9999999999999999 99999999999999997655432 333 2 567
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCC----CeEEEEeCCCceeEeeccCCCCCCccceeeccccee-EEEeeeeee----
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGD----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR-DAEMEILDQ---- 149 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---- 149 (250)
.|.+++|+| ++++|++++.+ +.|++||.. .....+. .+...+.+++|+|++.. ++ .+..|.
T Consensus 105 ~v~~v~fs~------dg~~l~~~~~~~~~~~~v~~wd~~--~~~~~l~-gh~~~v~~v~f~p~~~~~l~-s~s~D~~v~l 174 (611)
T 1nr0_A 105 PVKDISWDS------ESKRIAAVGEGRERFGHVFLFDTG--TSNGNLT-GQARAMNSVDFKPSRPFRII-SGSDDNTVAI 174 (611)
T ss_dssp CEEEEEECT------TSCEEEEEECCSSCSEEEEETTTC--CBCBCCC-CCSSCEEEEEECSSSSCEEE-EEETTSCEEE
T ss_pred ceEEEEECC------CCCEEEEEECCCCceeEEEEeeCC--CCcceec-CCCCCceEEEECCCCCeEEE-EEeCCCeEEE
Confidence 899999999 99999988865 478888853 3333333 34578999999999975 55 443332
Q ss_pred ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee-------eccCCce
Q 025649 150 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-------INLNKKV 222 (250)
Q Consensus 150 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~v 222 (250)
++....+++..+.+|...|.+++|+ |+|++|++|+.|++|++||+.++.. +..+ .+|...|
T Consensus 175 wd~~~~~~~~~l~~H~~~V~~v~fs---pdg~~las~s~D~~i~lwd~~~g~~---------~~~~~~~~~~~~~h~~~V 242 (611)
T 1nr0_A 175 FEGPPFKFKSTFGEHTKFVHSVRYN---PDGSLFASTGGDGTIVLYNGVDGTK---------TGVFEDDSLKNVAHSGSV 242 (611)
T ss_dssp EETTTBEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCE---------EEECBCTTSSSCSSSSCE
T ss_pred EECCCCeEeeeeccccCceEEEEEC---CCCCEEEEEECCCcEEEEECCCCcE---------eeeeccccccccccCCCE
Confidence 2334455667889999999999999 8999999999999999999998743 3333 2799999
Q ss_pred eEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 223 NWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 223 ~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.+++|+| ++++|++++.|++|++||++
T Consensus 243 ~~v~~sp-dg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 243 FGLTWSP-DGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp EEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred EEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence 9999998 89999999999999999974
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-35 Score=228.49 Aligned_cols=223 Identities=18% Similarity=0.197 Sum_probs=172.8
Q ss_pred CcEEEEcccceeeeeeccCCCC------------------CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSS------------------ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 62 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~------------------~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 62 (250)
++++|++.+++.+..+. +|.. .|.+++|+|+++ +|++|+.|++|++||+.+++.+..+.
T Consensus 86 ~v~i~~~~~g~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~- 162 (393)
T 1erj_A 86 TTQVYRVSDGSLVARLS-DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQ- 162 (393)
T ss_dssp CEEEEETTTCCEEEEEC-C-----------------CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEEC-
T ss_pred cEEEEEecCCCEEEEec-CccccccccccccccccCCCceeEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEc-
Confidence 57999999999988887 5542 399999999999 89999999999999999888777765
Q ss_pred CCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc-cceeE
Q 025649 63 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRD 141 (250)
Q Consensus 63 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 141 (250)
+ |...|.+++|+| ++++|++++.|++|++||+++++........ ..+.+++++| +++++
T Consensus 163 ~------------h~~~v~~~~~~p------~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l 222 (393)
T 1erj_A 163 G------------HEQDIYSLDYFP------SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE--DGVTTVAVSPGDGKYI 222 (393)
T ss_dssp C------------CSSCEEEEEECT------TSSEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEECSTTCCEE
T ss_pred c------------CCCCEEEEEEcC------CCCEEEEecCCCcEEEEECCCCeeEEEEEcC--CCcEEEEEECCCCCEE
Confidence 3 578899999999 9999999999999999999998877665543 6788999999 88888
Q ss_pred EE------eeeeeeccCeeeeee----ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec---ccc
Q 025649 142 AE------MEILDQSGGKRLHLD----YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT---SIN 208 (250)
Q Consensus 142 ~~------~~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~ 208 (250)
++ +..|+.........+ ....+|...|.+++|+ |++++|++|+.|+.|++||+++...... ...
T Consensus 223 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~ 299 (393)
T 1erj_A 223 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT---RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299 (393)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEEC--------------
T ss_pred EEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC---CCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence 84 223333322222111 1225799999999999 8999999999999999999987533211 111
Q ss_pred cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 209 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
..+...+.+|...|.+++|+| ++++|++|+.|+.|++||++
T Consensus 300 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~ 340 (393)
T 1erj_A 300 GTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKK 340 (393)
T ss_dssp -CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETT
T ss_pred CcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECC
Confidence 234456778999999999998 88899999999999999963
No 19
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-35 Score=222.92 Aligned_cols=229 Identities=15% Similarity=0.125 Sum_probs=173.2
Q ss_pred CcEEEEcccc--eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQH--CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~--~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|+|||+.++ +.+..+. +|...|.+++|+|+++ +|++|+.|++|++||++++.....+.. ...|..
T Consensus 84 ~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~----------~~~h~~ 151 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSV----------LNSHTQ 151 (345)
T ss_dssp CEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEE----------ECCCCS
T ss_pred cEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEE----------ecCcCC
Confidence 5899998866 4677888 9999999999999999 899999999999999987654322210 011577
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeecccceeEEE------eeeeeecc
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSG 151 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 151 (250)
.|.+++|+| ++++|++++.|+.|++||.+.+... ......+...+.+++|+|+|+++++ +..|+...
T Consensus 152 ~v~~~~~~p------~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 152 DVKHVVWHP------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp CEEEEEECS------SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred CeEEEEECC------CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 899999999 9999999999999999999886533 2222334578999999999999984 22344321
Q ss_pred C------------eeeeeeccccC-ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc
Q 025649 152 G------------KRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 218 (250)
Q Consensus 152 ~------------~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 218 (250)
. ...+++..+.+ |...|.+++|+ |++..|++++.|+.|++|+....................+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h 302 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC---QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH 302 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC---TTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred CCCCccceeeccCCccceeEEecCCCCCcEEEEEEe---cCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence 1 11233444444 88899999999 89999999999999999998765322110000111233589
Q ss_pred CCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 219 NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
...|++++|+|.++.+|++|+.||.|++|+++
T Consensus 303 ~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 303 SQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred cCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 99999999999544689999999999999974
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3e-35 Score=223.49 Aligned_cols=207 Identities=14% Similarity=0.199 Sum_probs=171.5
Q ss_pred ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649 10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 89 (250)
Q Consensus 10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (250)
.+...+++ +|.+.|.+++|+|+++ +|++|+.||+|++||+.+++.+..+.. +...|.+++|+|
T Consensus 45 ~~~~~~l~-gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~-------------~~~~v~~~~~s~-- 107 (340)
T 1got_B 45 MRTRRTLR-GHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHAIPL-------------RSSWVMTCAYAP-- 107 (340)
T ss_dssp CCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEEEEC-------------SSSCEEEEEECT--
T ss_pred chhheeec-CCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceEeec-------------CCccEEEEEECC--
Confidence 34567788 9999999999999999 899999999999999999888777763 467899999999
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeCCCcee---EeeccCCCCCCccceeecccceeEEEe--eeeeeccCeeeeeeccccCc
Q 025649 90 MLDKTNKICVVAKGDGVVDVINIESELN---ISRSKSTTKPLKGSQSTSKVNIRDAEM--EILDQSGGKRLHLDYSVGGH 164 (250)
Q Consensus 90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h 164 (250)
++++|++|+.|+.|++||+.+... .......+...+.++.|++++..+... +....++....+.+..+.+|
T Consensus 108 ----~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h 183 (340)
T 1got_B 108 ----SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp ----TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred ----CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCC
Confidence 999999999999999999987531 222223345788999999998744421 11222233444566788899
Q ss_pred cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649 165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV 244 (250)
Q Consensus 165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 244 (250)
.+.|.+++|+ |+++++++|+.|+.|++||++++ .....+.+|...|.+++|+| ++++|++|+.||.|
T Consensus 184 ~~~v~~~~~~---~~~~~l~sg~~d~~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v 250 (340)
T 1got_B 184 TGDVMSLSLA---PDTRLFVSGACDASAKLWDVREG---------MCRQTFTGHESDINAICFFP-NGNAFATGSDDATC 250 (340)
T ss_dssp SSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTC---------SEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred CCceEEEEEC---CCCCEEEEEeCCCcEEEEECCCC---------eeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcE
Confidence 9999999999 89999999999999999999987 56667889999999999998 88999999999999
Q ss_pred EEEeCC
Q 025649 245 KVYSIS 250 (250)
Q Consensus 245 ~vw~~~ 250 (250)
++||++
T Consensus 251 ~iwd~~ 256 (340)
T 1got_B 251 RLFDLR 256 (340)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999974
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.5e-35 Score=222.58 Aligned_cols=216 Identities=20% Similarity=0.284 Sum_probs=180.3
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+++++.+..++ +|...|.+++|+|+++ +|++|+.|+.|++||+++++.+..+.. |...|
T Consensus 88 ~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------~~~~v 152 (312)
T 4ery_A 88 TLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPA-------------HSDPV 152 (312)
T ss_dssp EEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECC-------------CSSCE
T ss_pred EEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecC-------------CCCcE
Confidence 48999999999999999 9999999999999999 899999999999999999888777752 46789
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHL 157 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 157 (250)
.+++|+| ++++|++++.|+.|++||+++++............+..++|+|+++++++.+ ....++....+.
T Consensus 153 ~~~~~~~------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 153 SAVHFNR------DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226 (312)
T ss_dssp EEEEECT------TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred EEEEEcC------CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 9999998 9999999999999999999998887776666667889999999999998421 122223333445
Q ss_pred eccccCccccEEE--EEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 158 DYSVGGHTAAASC--VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 158 ~~~~~~h~~~v~~--~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
+..+.+|...+.+ ..+++ +++.+|++|+.||.|++||++++ +++..+.+|...|.+++|+| ++.++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~p-~~~~l 294 (312)
T 4ery_A 227 LKTYTGHKNEKYCIFANFSV--TGGKWIVSGSEDNLVYIWNLQTK---------EIVQKLQGHTDVVISTACHP-TENII 294 (312)
T ss_dssp EEEECSSCCSSSCCCEEEEC--SSSCEEEECCTTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECS-SSSEE
T ss_pred EEEEEecCCceEEEEEEEEe--CCCcEEEEECCCCEEEEEECCCc---------hhhhhhhccCCcEEEEeecC-cCCce
Confidence 5666777654332 33443 67899999999999999999987 67778889999999999998 78889
Q ss_pred EEee--CCceEEEEeC
Q 025649 236 VVCD--TSKVVKVYSI 249 (250)
Q Consensus 236 ~s~~--~d~~i~vw~~ 249 (250)
++++ .|+.|++|+.
T Consensus 295 ~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 295 ASAALENDKTIKLWKS 310 (312)
T ss_dssp EEEECTTTCCEEEEEC
T ss_pred EEEEccCCccEEEecC
Confidence 9886 6999999986
No 22
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-34 Score=221.16 Aligned_cols=213 Identities=18% Similarity=0.220 Sum_probs=174.1
Q ss_pred cEEEEcccc------eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649 2 WQIIDIRQH------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 2 i~iwd~~~~------~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
+++|++... .....+. +|...|.+++|+|++. .|++++.|++|++||+++++.+..+. +
T Consensus 130 i~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~-~------------ 194 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAKKKSVA-MHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFH-G------------ 194 (354)
T ss_dssp EEEEECCCCTTCCSGGGCEEEE-ECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEE-C------------
T ss_pred EEEEEEeccccccccccceeee-ccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEc-C------------
Confidence 688987643 3455677 8999999999999999 89999999999999999999888876 3
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeee
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQ 149 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 149 (250)
|...|.+++++| ++++++|++|+.||.|++||+++++....+..+ ...+.+++|+|++.++++. ..||.
T Consensus 195 h~~~v~~~~~~~----~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~ 269 (354)
T 2pbi_B 195 HGADVLCLDLAP----SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH-ESDVNSVRYYPSGDAFASGSDDATCRLYDL 269 (354)
T ss_dssp CSSCEEEEEECC----CSSCCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCCeEEEEEEe----CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCCeEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 467899999987 235789999999999999999998877766544 4789999999999999842 23333
Q ss_pred ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649 150 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 229 (250)
Q Consensus 150 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 229 (250)
....... ......+...+.+++|+ |++++|++|+.|+.|++||+.++ ..+..+.+|...|.+++|+|
T Consensus 270 ~~~~~~~-~~~~~~~~~~~~~~~~s---~~g~~l~~g~~d~~i~vwd~~~~---------~~~~~l~~h~~~v~~l~~sp 336 (354)
T 2pbi_B 270 RADREVA-IYSKESIIFGASSVDFS---LSGRLLFAGYNDYTINVWDVLKG---------SRVSILFGHENRVSTLRVSP 336 (354)
T ss_dssp TTTEEEE-EECCTTCCSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTC---------SEEEEECCCSSCEEEEEECT
T ss_pred CCCcEEE-EEcCCCcccceeEEEEe---CCCCEEEEEECCCcEEEEECCCC---------ceEEEEECCCCcEEEEEECC
Confidence 3322221 11222344578999999 89999999999999999999887 55667789999999999998
Q ss_pred CCCCeEEEeeCCceEEEEe
Q 025649 230 TESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 230 ~~~~~l~s~~~d~~i~vw~ 248 (250)
++++|++|+.|+.|++|+
T Consensus 337 -dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 337 -DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -TSSCEEEEETTSEEEEEC
T ss_pred -CCCEEEEEcCCCCEEecC
Confidence 899999999999999996
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2e-34 Score=219.26 Aligned_cols=213 Identities=21% Similarity=0.301 Sum_probs=166.7
Q ss_pred CcEEEEccc-------ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649 1 MWQIIDIRQ-------HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 1 ti~iwd~~~-------~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 73 (250)
+|+|||+.+ ++....+. +|...|.+++|+|++. +|++|+.|++|++||+++++.+..+. +
T Consensus 50 ~v~iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~-~---------- 116 (343)
T 2xzm_R 50 TVMIWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQENC-FAISSSWDKTLRLWDLRTGTTYKRFV-G---------- 116 (343)
T ss_dssp CEEEEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSSTT-EEEEEETTSEEEEEETTSSCEEEEEE-C----------
T ss_pred EEEEEECCcCCcccccccccchhc-cCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCcEEEEEc-C----------
Confidence 689999874 34567788 9999999999999999 89999999999999999998887776 3
Q ss_pred ccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec-cCCCCCCccceeecccc----------eeEE
Q 025649 74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-KSTTKPLKGSQSTSKVN----------IRDA 142 (250)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~ 142 (250)
|...|.+++|+| ++++|++++.|+.|++||+......... ...+...+.+++|+|++ .+++
T Consensus 117 --h~~~v~~v~~sp------~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~ 188 (343)
T 2xzm_R 117 --HQSEVYSVAFSP------DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188 (343)
T ss_dssp --CCSCEEEEEECS------STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE
T ss_pred --CCCcEEEEEECC------CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEE
Confidence 578999999999 9999999999999999999854333222 22345678999999987 5666
Q ss_pred EeeeeeeccC---eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC
Q 025649 143 EMEILDQSGG---KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 219 (250)
Q Consensus 143 ~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 219 (250)
+ +..|.... ...+....+.+|...|.+++|+ |+|++|++|+.||.|++||+.... .. .....+.
T Consensus 189 s-~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s---~~g~~l~sgs~dg~v~iwd~~~~~--------~~-~~~~~~~ 255 (343)
T 2xzm_R 189 S-VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSIS---PNGKYIATGGKDKKLLIWDILNLT--------YP-QREFDAG 255 (343)
T ss_dssp E-EETTSEEEEEETTTEEEEEEECCSSCEEEEEEC---TTSSEEEEEETTCEEEEEESSCCS--------SC-SEEEECS
T ss_pred E-EcCCCEEEEEcCCCceeEEEcCccccceEEEEC---CCCCEEEEEcCCCeEEEEECCCCc--------cc-ceeecCC
Confidence 3 33222210 1223455778999999999999 899999999999999999996542 11 1223456
Q ss_pred CceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 220 KKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 220 ~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
..|.+++|+| ++++++ ++.|+.|++||+
T Consensus 256 ~~v~~v~~sp-~~~~la-~~~d~~v~iw~~ 283 (343)
T 2xzm_R 256 STINQIAFNP-KLQWVA-VGTDQGVKIFNL 283 (343)
T ss_dssp SCEEEEEECS-SSCEEE-EEESSCEEEEES
T ss_pred CcEEEEEECC-CCCEEE-EECCCCEEEEEe
Confidence 6799999998 777665 455888999996
No 24
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.4e-35 Score=220.24 Aligned_cols=209 Identities=19% Similarity=0.249 Sum_probs=170.7
Q ss_pred cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC-----CccceecCCCCCCCCCCcccCCCceeEE
Q 025649 9 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-----PNKIVNFGLPENNGNAGQCYNPAFVHAI 83 (250)
Q Consensus 9 ~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 83 (250)
+..+..+|. +|.+.|.+++|+|++..+|++|+.|++|++||+.... ++..+. + |...|.++
T Consensus 6 ~~~l~~~l~-gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~------------h~~~v~~~ 71 (319)
T 3frx_A 6 VLVLRGTLE-GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-G------------HSHIVQDC 71 (319)
T ss_dssp EEEEEEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-C------------CSSCEEEE
T ss_pred EEEEEEEEc-cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-C------------CcccEEEE
Confidence 345667889 9999999999999774489999999999999986533 233343 2 67899999
Q ss_pred ecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----cCeeeeeec
Q 025649 84 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDY 159 (250)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 159 (250)
+|+| ++++|++++.|++|++||+++++....+..+ ...+.+++|+|++.++++ +..|.. +.. .+.+.
T Consensus 72 ~~s~------dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s-~s~D~~i~vwd~~-~~~~~ 142 (319)
T 3frx_A 72 TLTA------DGAYALSASWDKTLRLWDVATGETYQRFVGH-KSDVMSVDIDKKASMIIS-GSRDKTIKVWTIK-GQCLA 142 (319)
T ss_dssp EECT------TSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTSCEEEE-EETTSCEEEEETT-SCEEE
T ss_pred EECC------CCCEEEEEeCCCEEEEEECCCCCeeEEEccC-CCcEEEEEEcCCCCEEEE-EeCCCeEEEEECC-CCeEE
Confidence 9999 9999999999999999999999887776654 478999999999999984 333222 221 23556
Q ss_pred cccCccccEEEEEeecCC---CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 160 SVGGHTAAASCVAFSMFG---ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 160 ~~~~h~~~v~~~~~~p~~---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
.+.+|...|.++.|+|.. +++.++++++.|+.|++||+++. .....+.+|...|.+++|+| ++++|+
T Consensus 143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---------~~~~~~~~h~~~v~~~~~sp-~g~~l~ 212 (319)
T 3frx_A 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF---------QIEADFIGHNSNINTLTASP-DGTLIA 212 (319)
T ss_dssp EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT---------EEEEEECCCCSCEEEEEECT-TSSEEE
T ss_pred EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc---------hhheeecCCCCcEEEEEEcC-CCCEEE
Confidence 778999999999999421 13558999999999999999987 55667789999999999998 899999
Q ss_pred EeeCCceEEEEeCC
Q 025649 237 VCDTSKVVKVYSIS 250 (250)
Q Consensus 237 s~~~d~~i~vw~~~ 250 (250)
+|+.||.|++||++
T Consensus 213 s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 213 SAGKDGEIMLWNLA 226 (319)
T ss_dssp EEETTCEEEEEETT
T ss_pred EEeCCCeEEEEECC
Confidence 99999999999974
No 25
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.1e-34 Score=216.34 Aligned_cols=215 Identities=16% Similarity=0.194 Sum_probs=176.9
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+.+++....+. +|...|.+++|+|+++ +|++|+.|+.|++||+++++.+..+.. |...|
T Consensus 46 ~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~-------------~~~~v 110 (312)
T 4ery_A 46 LIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKG-------------HSNYV 110 (312)
T ss_dssp CEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEEC-------------CSSCE
T ss_pred eEEEEeCCCcccchhhc-cCCCceEEEEEcCCCC-EEEEECCCCEEEEEECCCCcEEEEEcC-------------CCCCE
Confidence 58999999999999999 9999999999999999 899999999999999999988877763 46789
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLH 156 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 156 (250)
.+++|+| ++++|++++.|+.|++||+++++....+..+ ...+.++.|+|+++++++ +..+. ++....+
T Consensus 111 ~~~~~~~------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 111 FCCNFNP------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQ 182 (312)
T ss_dssp EEEEECS------SSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEE-EETTSCEEEEETTTCC
T ss_pred EEEEEcC------CCCEEEEEeCCCcEEEEECCCCEEEEEecCC-CCcEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCc
Confidence 9999999 9999999999999999999998877666544 467999999999999884 33222 2222223
Q ss_pred eeccc-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee--EEEecCCCCC
Q 025649 157 LDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN--WLCTTPTESE 233 (250)
Q Consensus 157 ~~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~ 233 (250)
.+..+ ..+...+.+++|+ |++++|++++.|+.|++||++++ +.+..+.+|...+. ...+++.++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (312)
T 4ery_A 183 CLKTLIDDDNPPVSFVKFS---PNGKYILAATLDNTLKLWDYSKG---------KCLKTYTGHKNEKYCIFANFSVTGGK 250 (312)
T ss_dssp EEEEECCSSCCCEEEEEEC---TTSSEEEEEETTTEEEEEETTTT---------EEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred eeeEEeccCCCceEEEEEC---CCCCEEEEEcCCCeEEEEECCCC---------cEEEEEEecCCceEEEEEEEEeCCCc
Confidence 33333 4566789999999 89999999999999999999997 55566667766533 3345556888
Q ss_pred eEEEeeCCceEEEEeCC
Q 025649 234 NLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 234 ~l~s~~~d~~i~vw~~~ 250 (250)
+|++|+.||.|++||++
T Consensus 251 ~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 251 WIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp EEEECCTTSCEEEEETT
T ss_pred EEEEECCCCEEEEEECC
Confidence 99999999999999974
No 26
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-34 Score=236.26 Aligned_cols=228 Identities=15% Similarity=0.163 Sum_probs=172.0
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCC--------------
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE-------------- 66 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~-------------- 66 (250)
+|++||.++++....+. +|...|.+++|+|+++ +|++++.|++|++||+.+++....+..+...
T Consensus 305 ~i~~~~~~~~~~~~~~~-gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~ 382 (611)
T 1nr0_A 305 FINFVNPELGSIDQVRY-GHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 382 (611)
T ss_dssp CEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE
T ss_pred cEEEEeCCCCCcceEEc-CCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEE
Confidence 47899999999888898 9999999999999999 8999999999999999877644332100000
Q ss_pred -----------------CCC-----------CCC---------------------------cccCCCceeEEecCCCccc
Q 025649 67 -----------------NNG-----------NAG---------------------------QCYNPAFVHAIAIPDADML 91 (250)
Q Consensus 67 -----------------~~~-----------~~~---------------------------~~~~~~~v~~~~~~~~~~~ 91 (250)
... ... ...+...+.+++|+|
T Consensus 383 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp---- 458 (611)
T 1nr0_A 383 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN---- 458 (611)
T ss_dssp EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT----
T ss_pred EEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC----
Confidence 000 000 001234567889998
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeeeccCeeeeeecc--ccC
Q 025649 92 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQSGGKRLHLDYS--VGG 163 (250)
Q Consensus 92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~ 163 (250)
++++|++|+.|++|++||+.++.........+...+.+++|+|+|+++++. ..|+.... .+.+.. +.+
T Consensus 459 --dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~--~~~~~~~~~~~ 534 (611)
T 1nr0_A 459 --DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN--FELAHTNSWTF 534 (611)
T ss_dssp --TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT--TEESCCCCCCC
T ss_pred --CCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC--Cceeeeeeeee
Confidence 999999999999999999987654321113445789999999999999842 22333221 222222 345
Q ss_pred ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-CCceeEEEecCCCCCeEEEeeCCc
Q 025649 164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTSK 242 (250)
Q Consensus 164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~ 242 (250)
|...|.+++|+ |+|++|++|+.|++|++||+..+.. ..+....+| ...|.+++|+| +++ |++++.|+
T Consensus 535 H~~~V~~v~fs---pdg~~lasgs~D~~v~lW~~~~~~~-------~~~~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~ 602 (611)
T 1nr0_A 535 HTAKVACVSWS---PDNVRLATGSLDNSVIVWNMNKPSD-------HPIIIKGAHAMSSVNSVIWLN-ETT-IVSAGQDS 602 (611)
T ss_dssp CSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTCTTS-------CCEEETTSSTTSCEEEEEEEE-TTE-EEEEETTS
T ss_pred cccceeEEEEC---CCCCEEEEEECCCcEEEEECCCccc-------ccchhhccCcccCeeEEEEcC-CCE-EEEecCCC
Confidence 99999999999 8999999999999999999987631 122455688 88999999998 777 99999999
Q ss_pred eEEEEeCC
Q 025649 243 VVKVYSIS 250 (250)
Q Consensus 243 ~i~vw~~~ 250 (250)
+|++|+++
T Consensus 603 ~i~lW~~~ 610 (611)
T 1nr0_A 603 NIKFWNVP 610 (611)
T ss_dssp CEEEEECC
T ss_pred CEEEEecc
Confidence 99999974
No 27
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.5e-35 Score=226.37 Aligned_cols=223 Identities=19% Similarity=0.236 Sum_probs=171.2
Q ss_pred CcEEEEcccce-------eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649 1 MWQIIDIRQHC-------LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 1 ti~iwd~~~~~-------~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 73 (250)
+|++||+.+.. ....+. +|.+.|.++.|+|++...|++|+.|++|++||+++++.+..+... ..
T Consensus 131 ~v~iw~~~~~~~~~~~~~~~~~~~-gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~--------~~ 201 (380)
T 3iz6_a 131 ACSIFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE--------FP 201 (380)
T ss_dssp CCEEEECCCCSSCCCSSTTCCBCC-CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC--------SS
T ss_pred cEEEEECCCCccccCCccceeecc-CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc--------cC
Confidence 57899986532 345677 999999999999986547999999999999999999877666321 11
Q ss_pred ccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc-eeEeeccCCCCCCccceeecccceeEEE------eee
Q 025649 74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE-LNISRSKSTTKPLKGSQSTSKVNIRDAE------MEI 146 (250)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 146 (250)
..|...|.++.++| .+++++++|+.|+.|++||++.. .....+. .+...+.+++|+|++.++++ +..
T Consensus 202 ~~h~~~v~~~~~~~-----~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~i~l 275 (380)
T 3iz6_a 202 SGHTADVLSLSINS-----LNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQRFGTGSDDGTCRL 275 (380)
T ss_dssp SSCCSCEEEEEECS-----SSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSSEEEEECSSSCEEE
T ss_pred CCCccCeEEEEeec-----CCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCCeEEEEcCCCeEEE
Confidence 12677899999986 58899999999999999999854 3333333 34578999999999999985 223
Q ss_pred eeeccCeeeeeeccccC-------ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC
Q 025649 147 LDQSGGKRLHLDYSVGG-------HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 219 (250)
Q Consensus 147 ~~~~~~~~~~~~~~~~~-------h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 219 (250)
||...... +..+.. +...|.+++|+ |+|++|++|+.||.|++||+..+.... .+.....+|.
T Consensus 276 wd~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~g~~dg~i~vwd~~~~~~~~-----~~~~~~~~h~ 344 (380)
T 3iz6_a 276 FDMRTGHQ---LQVYNREPDRNDNELPIVTSVAFS---ISGRLLFAGYSNGDCYVWDTLLAEMVL-----NLGTLQNSHE 344 (380)
T ss_dssp EETTTTEE---EEEECCCCSSSCCSSCSCSEEEEC---SSSSEEEEECTTSCEEEEETTTCCEEE-----EECCSCSSCC
T ss_pred EECCCCcE---EEEecccccccccccCceEEEEEC---CCCCEEEEEECCCCEEEEECCCCceEE-----EEecccCCCC
Confidence 44433332 223322 23458999999 899999999999999999998873221 1111125799
Q ss_pred CceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 220 KKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 220 ~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
..|.+++|+| ++++|++|+.|+.|++|+++
T Consensus 345 ~~v~~l~~s~-dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 345 GRISCLGLSS-DGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CCCCEEEECS-SSSEEEEECTTSCEEEEECC
T ss_pred CceEEEEECC-CCCEEEEeeCCCCEEEEecC
Confidence 9999999998 89999999999999999974
No 28
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.3e-34 Score=218.52 Aligned_cols=224 Identities=12% Similarity=0.172 Sum_probs=175.2
Q ss_pred CcEEEEcccc----eeeeeeccCCCCCeeeEEEcC--CCCeEEEEecCCCeEEEEEccCCCC---------ccceecCCC
Q 025649 1 MWQIIDIRQH----CLYKSLRAGHSSICSSVQFIP--WKPWEVISGGLDSKLVMWDFSKGRP---------NKIVNFGLP 65 (250)
Q Consensus 1 ti~iwd~~~~----~~~~~l~~~h~~~v~~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~~~---------~~~~~~~~~ 65 (250)
+|++||+.++ +....+. +|...|.+++|+| ++. +|++|+.||.|++||+++++. +..+.
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~---- 107 (351)
T 3f3f_A 34 HIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGR-IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN---- 107 (351)
T ss_dssp EEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCS-EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC----
T ss_pred eEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCC-EEEEEcCCCeEEEEecCCCcccccccCcceeeeec----
Confidence 4899999876 5677788 9999999999999 577 899999999999999987743 22222
Q ss_pred CCCCCCCcccCCCceeEEecCCCcccCCC--CCEEEEEeCCCeEEEEeCCCceeEeecc------------CCCCCCccc
Q 025649 66 ENNGNAGQCYNPAFVHAIAIPDADMLDKT--NKICVVAKGDGVVDVINIESELNISRSK------------STTKPLKGS 131 (250)
Q Consensus 66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~------------~~~~~~~~~ 131 (250)
.|...|.+++|+| + +++|++++.||.|++||+++++...... ..+...+.+
T Consensus 108 ---------~~~~~v~~~~~~~------~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (351)
T 3f3f_A 108 ---------DSKGSLYSVKFAP------AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC 172 (351)
T ss_dssp ---------CCSSCEEEEEECC------GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred ---------ccCCceeEEEEcC------CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeE
Confidence 2578899999999 7 9999999999999999998865432221 134567889
Q ss_pred eeeccc---ceeEEEeeeeee------ccCeeeeeeccccCccccEEEEEeecCCCCC----cEEEEeeCCCeEEEEecC
Q 025649 132 QSTSKV---NIRDAEMEILDQ------SGGKRLHLDYSVGGHTAAASCVAFSMFGERG----KYLISGGNDKLVKVWDCS 198 (250)
Q Consensus 132 ~~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~----~~l~s~~~d~~i~iwd~~ 198 (250)
+.|+|+ +..+++ +..+. ........+..+.+|...|.+++|+ |++ ++|++|+.||.|++||++
T Consensus 173 ~~~~p~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~---p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAV-SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWA---PSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp EEECCCSSSCCEEEE-EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEEC---CCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred EEeccCCCCCcEEEE-ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEEC---CCCCCcceEEEEEcCCCeEEEEeCC
Confidence 999997 777774 32222 2223344567788999999999999 787 899999999999999998
Q ss_pred CCcceec-------------------------------------ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC
Q 025649 199 RFQGVQT-------------------------------------SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 241 (250)
Q Consensus 199 ~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 241 (250)
.+..... ......+..+.+|...|++++|+| ++++|++++.|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d 327 (351)
T 3f3f_A 249 EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDD 327 (351)
T ss_dssp ECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETT
T ss_pred CCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecCC
Confidence 7532110 001245566778999999999998 88999999999
Q ss_pred ceEEEEeCC
Q 025649 242 KVVKVYSIS 250 (250)
Q Consensus 242 ~~i~vw~~~ 250 (250)
|.|++|+++
T Consensus 328 g~v~iw~~~ 336 (351)
T 3f3f_A 328 GKVRLWKAT 336 (351)
T ss_dssp SCEEEEEEC
T ss_pred CcEEEEecC
Confidence 999999974
No 29
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.5e-35 Score=227.14 Aligned_cols=216 Identities=17% Similarity=0.262 Sum_probs=171.8
Q ss_pred EEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeE
Q 025649 3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA 82 (250)
Q Consensus 3 ~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (250)
..|+..+..+...|+ +|.+.|++++|+|+++ +|+||+.||+|++||+.+++....+.. |...|.+
T Consensus 49 ~~~~~~~~~~~~~l~-gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~-------------h~~~v~~ 113 (380)
T 3iz6_a 49 VSFNPTDLVCCRTLQ-GHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHAIKL-------------HCPWVME 113 (380)
T ss_dssp CCCCCCCCEEEEEEC-CCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEEEEC-------------CCTTCCC
T ss_pred cccccceeEEeeccc-ccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceEEec-------------CCCCEEE
Confidence 346667778888999 9999999999999999 899999999999999999888877763 4678999
Q ss_pred EecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee------EeeccCCCCCCccceeecccce-eEEE------eeeeee
Q 025649 83 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELN------ISRSKSTTKPLKGSQSTSKVNI-RDAE------MEILDQ 149 (250)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~ 149 (250)
++|+| ++++|++|+.|+.+++||+.+... .......+...+.++.|.|++. .+++ +..||.
T Consensus 114 ~~~s~------~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~ 187 (380)
T 3iz6_a 114 CAFAP------NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV 187 (380)
T ss_dssp CEECT------TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT
T ss_pred EEECC------CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc
Confidence 99999 999999999999999999975321 1122234457788899999754 4553 223333
Q ss_pred ccCeeeeee--ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEe
Q 025649 150 SGGKRLHLD--YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 227 (250)
Q Consensus 150 ~~~~~~~~~--~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 227 (250)
......... ....+|...|.++.|+| +++++|++|+.|+.|++||++... ..+..+.+|...|++++|
T Consensus 188 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~sgs~D~~v~~wd~~~~~--------~~~~~~~~h~~~v~~v~~ 257 (380)
T 3iz6_a 188 TTGQRISIFGSEFPSGHTADVLSLSINS--LNANMFISGSCDTTVRLWDLRITS--------RAVRTYHGHEGDINSVKF 257 (380)
T ss_dssp TTCCEEEEECCCSSSSCCSCEEEEEECS--SSCCEEEEEETTSCEEEEETTTTC--------CCCEEECCCSSCCCEEEE
T ss_pred CCCcEEEEeecccCCCCccCeEEEEeec--CCCCEEEEEECCCeEEEEECCCCC--------cceEEECCcCCCeEEEEE
Confidence 333222211 11267999999999984 588999999999999999998532 455677899999999999
Q ss_pred cCCCCCeEEEeeCCceEEEEeCC
Q 025649 228 TPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 228 ~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+| ++++|++|+.||+|++||++
T Consensus 258 ~p-~~~~l~s~s~D~~i~lwd~~ 279 (380)
T 3iz6_a 258 FP-DGQRFGTGSDDGTCRLFDMR 279 (380)
T ss_dssp CT-TSSEEEEECSSSCEEEEETT
T ss_pred ec-CCCeEEEEcCCCeEEEEECC
Confidence 98 89999999999999999974
No 30
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-34 Score=217.52 Aligned_cols=218 Identities=12% Similarity=0.095 Sum_probs=158.4
Q ss_pred CcEEEEccc-------ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-C---CccceecCCCCCCC
Q 025649 1 MWQIIDIRQ-------HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-R---PNKIVNFGLPENNG 69 (250)
Q Consensus 1 ti~iwd~~~-------~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~---~~~~~~~~~~~~~~ 69 (250)
+|+|||++. .+.+..+. +|...|.+++|+|+++ +|++|+.|++|++||++.. + ++..+. +
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~------ 151 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQ-E------ 151 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEEC-C------
T ss_pred cEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEec-c------
Confidence 589999853 45677888 9999999999999999 8999999999999999533 2 233333 2
Q ss_pred CCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc--eeEeeccCCCCCCccceeeccc--ceeEEE--
Q 025649 70 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE--LNISRSKSTTKPLKGSQSTSKV--NIRDAE-- 143 (250)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-- 143 (250)
|...|.+++|+| ++++|++++.|++|++||...+ +....+. .+...+.+++|+|+ +..+++
T Consensus 152 ------h~~~v~~v~~~p------~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s 218 (330)
T 2hes_X 152 ------HSQDVKHVIWHP------SEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEGVFRLCSGS 218 (330)
T ss_dssp ------CSSCEEEEEECS------SSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSSSCEEEEEE
T ss_pred ------CCCceEEEEECC------CCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCCeeEEEEEe
Confidence 678899999999 9999999999999999998775 3344443 34578999999998 566663
Q ss_pred ----eeeeeeccC-----eeeeeeccccC-ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceee
Q 025649 144 ----MEILDQSGG-----KRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI 213 (250)
Q Consensus 144 ----~~~~~~~~~-----~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 213 (250)
+..|+.... ....+...+.+ |...|.+++|+ +++ +|++++.||.|++||..++... ....
T Consensus 219 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~-~l~s~~~dg~v~iw~~~~~~~~------~~~~ 288 (330)
T 2hes_X 219 DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG---FNG-LIASVGADGVLAVYEEVDGEWK------VFAK 288 (330)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC---TTS-CEEEEETTSCEEEEEEETTEEE------EEEE
T ss_pred CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc---CCC-EEEEEeCCCEEEEEEcCCCceE------EEec
Confidence 223333211 11133445554 89999999999 654 8999999999999998875211 1222
Q ss_pred eeeccCC-ceeEEEecCC-CCCeEEEeeCCceEEEEeCC
Q 025649 214 KNINLNK-KVNWLCTTPT-ESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 214 ~~~~~~~-~v~~~~~~~~-~~~~l~s~~~d~~i~vw~~~ 250 (250)
...+|.. .|.+++|+|. ++++|++|+.||.|++||++
T Consensus 289 ~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 289 RALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp ESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred cccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 3357877 8999999985 67899999999999999974
No 31
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-34 Score=216.75 Aligned_cols=210 Identities=14% Similarity=0.059 Sum_probs=163.7
Q ss_pred ccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC--CccceecCCCCCCCCCCcccCCCceeEEec
Q 025649 8 RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR--PNKIVNFGLPENNGNAGQCYNPAFVHAIAI 85 (250)
Q Consensus 8 ~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 85 (250)
.+.+++..++ +|.+.|.+++|+|+ +|++|+.|++|++||+..+. .+..+..+ .|...|.+++|
T Consensus 2 ~~~~~~~~~~-~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~-----------~h~~~v~~v~~ 66 (330)
T 2hes_X 2 ASINLIKSLK-LYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDET-----------AHKKAIRSVAW 66 (330)
T ss_dssp -CCEEEEEEE-CCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTT-----------CCCSCEEEEEE
T ss_pred cccccceeec-cCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecC-----------CccCCEEEEEE
Confidence 3567788999 99999999999987 79999999999999998753 22333111 16788999999
Q ss_pred CCCcccCCCCCEEEEEeCCCeEEEEeCCCc-------eeEeeccCCCCCCccceeecccceeEEE------eeeeeecc-
Q 025649 86 PDADMLDKTNKICVVAKGDGVVDVINIESE-------LNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSG- 151 (250)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~- 151 (250)
+| ++++|++++.|++|++||++.. +....+. .+...+.+++|+|+++++++ +..|+...
T Consensus 67 sp------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~ 139 (330)
T 2hes_X 67 RP------HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139 (330)
T ss_dssp CT------TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred CC------CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence 99 9999999999999999999642 2223333 34578999999999999985 22344422
Q ss_pred CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649 152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 231 (250)
Q Consensus 152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 231 (250)
....+++..+.+|...|.+++|+ |++++|++|+.|++|++||...+.. +++..+.+|...|.+++|+|..
T Consensus 140 ~~~~~~~~~~~~h~~~v~~v~~~---p~~~~l~s~s~D~~i~iW~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~ 209 (330)
T 2hes_X 140 GEEYECISVLQEHSQDVKHVIWH---PSEALLASSSYDDTVRIWKDYDDDW-------ECVAVLNGHEGTVWSSDFDKTE 209 (330)
T ss_dssp CCCCEEEEEECCCSSCEEEEEEC---SSSSEEEEEETTSCEEEEEEETTEE-------EEEEEECCCSSCEEEEEECCSS
T ss_pred CCCeEEEEEeccCCCceEEEEEC---CCCCEEEEEcCCCeEEEEECCCCCe-------eEEEEccCCCCcEEEEEecCCC
Confidence 23345667888999999999999 8999999999999999999876421 3556778999999999999832
Q ss_pred -CCeEEEeeCCceEEEEeC
Q 025649 232 -SENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 232 -~~~l~s~~~d~~i~vw~~ 249 (250)
+.+|++|+.|++|++||+
T Consensus 210 ~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 210 GVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp SSCEEEEEETTSCEEEEEE
T ss_pred CeeEEEEEeCCCeEEEEEe
Confidence 568999999999999986
No 32
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.1e-34 Score=212.84 Aligned_cols=211 Identities=11% Similarity=0.120 Sum_probs=160.9
Q ss_pred eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC--CCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649 14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML 91 (250)
Q Consensus 14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (250)
..+. +|.+.|.+++|+|+++ +|++|+.|++|++||+... +.+..+. + |...|.+++|+|
T Consensus 3 ~~~~-~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~l~-g------------H~~~V~~v~~s~---- 63 (297)
T 2pm7_B 3 VIAN-AHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDTLT-G------------HEGPVWRVDWAH---- 63 (297)
T ss_dssp EECC-SCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEEEC-C------------CSSCEEEEEECC----
T ss_pred eecc-CCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEEEc-c------------ccCCeEEEEecC----
Confidence 4567 9999999999999999 8999999999999999743 4555554 3 688999999986
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCcee--EeeccCCCCCCccceeeccc--ceeEEE------eeeeeeccCeeeeeeccc
Q 025649 92 DKTNKICVVAKGDGVVDVINIESELN--ISRSKSTTKPLKGSQSTSKV--NIRDAE------MEILDQSGGKRLHLDYSV 161 (250)
Q Consensus 92 ~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~ 161 (250)
+.++++|++|+.|++|++||+++++. .... ..+...+.+++|+|+ +.++++ +..|+....... ....+
T Consensus 64 ~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-~~~~~ 141 (297)
T 2pm7_B 64 PKFGTILASCSYDGKVMIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-SPIII 141 (297)
T ss_dssp GGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-CCEEE
T ss_pred CCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-eeeee
Confidence 12489999999999999999998642 2222 234578999999997 777773 223333222111 13456
Q ss_pred cCccccEEEEEeecCC----------CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649 162 GGHTAAASCVAFSMFG----------ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 231 (250)
Q Consensus 162 ~~h~~~v~~~~~~p~~----------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 231 (250)
.+|...|.+++|+|.. +++++|++|+.|++|++||++++.... .+...+.+|...|.+++|+|..
T Consensus 142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~-----~~~~~l~~H~~~V~~v~~sp~~ 216 (297)
T 2pm7_B 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----VLESTLEGHSDWVRDVAWSPTV 216 (297)
T ss_dssp ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE-----EEEEEECCCSSCEEEEEECCCC
T ss_pred ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE-----EEEEEecCCCCceEEEEECCCC
Confidence 7899999999999311 025799999999999999998763211 2445678999999999999832
Q ss_pred --CCeEEEeeCCceEEEEeCC
Q 025649 232 --SENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 232 --~~~l~s~~~d~~i~vw~~~ 250 (250)
+.+|++++.|++|++||++
T Consensus 217 ~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEES
T ss_pred CCceEEEEEECCCcEEEEEeC
Confidence 5789999999999999863
No 33
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3e-34 Score=232.28 Aligned_cols=207 Identities=21% Similarity=0.279 Sum_probs=174.2
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||. +++.+..+. +|...|.+++|+|+++ +|++++.|+.|++||. +++.+..+. + |...|
T Consensus 367 ~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~-~~~~~~~~~-~------------~~~~v 429 (577)
T 2ymu_A 367 TVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLT-G------------HSSSV 429 (577)
T ss_dssp EEEEEET-TCCEEEEEE-CCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TCCEEEEEE-C------------CSSCE
T ss_pred EEEEEcC-CCCEEEEec-CCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeC-CCCEEEEec-C------------CCCCe
Confidence 4789995 678888999 9999999999999999 8999999999999996 466666655 2 57889
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLH 156 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 156 (250)
.+++|+| ++++|++++.|+.|++||... +....+.. +...+.+++|+|+++++++ +..| .++ ...+
T Consensus 430 ~~~~~s~------d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~-~~~~v~~~~~spd~~~las-~~~d~~i~iw~-~~~~ 499 (577)
T 2ymu_A 430 WGVAFSP------DDQTIASASDDKTVKLWNRNG-QLLQTLTG-HSSSVRGVAFSPDGQTIAS-ASDDKTVKLWN-RNGQ 499 (577)
T ss_dssp EEEEECT------TSSEEEEEETTSEEEEEETTS-CEEEEEEC-CSSCEEEEEECTTSCEEEE-EETTSEEEEEE-TTSC
T ss_pred EEEEECC------CCCEEEEEcCCCEEEEEECCC-CEEEEEcC-CCCCEEEEEEcCCCCEEEE-EeCCCEEEEEc-CCCC
Confidence 9999999 999999999999999999754 44444433 3478999999999999985 2222 122 2334
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
++..+.+|...|++++|+ |+|++|++++.||.|++||.. + +++..+.+|...|++++|+| |+++|+
T Consensus 500 ~~~~~~~h~~~v~~l~~s---~dg~~l~s~~~dg~v~lwd~~-~---------~~~~~~~~h~~~v~~~~fs~-dg~~l~ 565 (577)
T 2ymu_A 500 LLQTLTGHSSSVRGVAFS---PDGQTIASASDDKTVKLWNRN-G---------QLLQTLTGHSSSVWGVAFSP-DGQTIA 565 (577)
T ss_dssp EEEEEECCSSCEEEEEEC---TTSSCEEEEETTSEEEEECTT-S---------CEEEEEECCSSCEEEEEECT-TSSCEE
T ss_pred EEEEEeCCCCCEEEEEEc---CCCCEEEEEECcCEEEEEeCC-C---------CEEEEEcCCCCCEEEEEEcC-CCCEEE
Confidence 567888999999999999 899999999999999999964 3 56678889999999999998 899999
Q ss_pred EeeCCceEEEEe
Q 025649 237 VCDTSKVVKVYS 248 (250)
Q Consensus 237 s~~~d~~i~vw~ 248 (250)
+++.|++|++||
T Consensus 566 s~~~D~~i~~Wd 577 (577)
T 2ymu_A 566 SASSDKTVKLWN 577 (577)
T ss_dssp EEETTSCEEEEC
T ss_pred EEeCCCEEEEeC
Confidence 999999999997
No 34
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.3e-34 Score=222.89 Aligned_cols=215 Identities=15% Similarity=0.170 Sum_probs=174.8
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+++++....+. +|...|.+++|+|+++ +|++|+.|++|++||+++++.+..+. + |...|
T Consensus 120 ~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~-~------------h~~~v 184 (420)
T 3vl1_A 120 DIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLI-G------------HRATV 184 (420)
T ss_dssp CEEEECTTSCEEEEETT-SSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEE-C------------CSSCE
T ss_pred CEEEEeCCCcceeeecc-cccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEc-C------------CCCcE
Confidence 58999999999998888 9999999999999999 89999999999999999998888776 3 57899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC-----------------------CCCCccceeeccc
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-----------------------TKPLKGSQSTSKV 137 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~ 137 (250)
.+++|+| ++++|++++.|+.|++||+++++....+... ....+.+++|+|+
T Consensus 185 ~~~~~~~------~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 258 (420)
T 3vl1_A 185 TDIAIID------RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY 258 (420)
T ss_dssp EEEEEET------TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT
T ss_pred EEEEEcC------CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC
Confidence 9999999 9999999999999999999998877665532 1356778889999
Q ss_pred ceeEEEeeeeee----ccCeeeeeecc-ccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccce
Q 025649 138 NIRDAEMEILDQ----SGGKRLHLDYS-VGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDL 211 (250)
Q Consensus 138 ~~~~~~~~~~~~----~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 211 (250)
++++++ +..+. ++....+.+.. ...|...|.+++|+ |+++ +|++|+.||.|++||++++. .+
T Consensus 259 ~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~g~~dg~i~vwd~~~~~--------~~ 326 (420)
T 3vl1_A 259 GKYVIA-GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVD---GNNANYIYAGYENGMLAQWDLRSPE--------CP 326 (420)
T ss_dssp TEEEEE-EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEEC---SSCTTEEEEEETTSEEEEEETTCTT--------SC
T ss_pred CCEEEE-EcCCCeEEEEECCCCceeEEcccccCCCceeEEEe---CCCCCEEEEEeCCCeEEEEEcCCCc--------Cc
Confidence 999984 32222 22222222223 34688899999999 7888 99999999999999999863 22
Q ss_pred eeeeec-cCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 212 LIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 212 ~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+..+.. |...+..+.+ + ++++|++++.|+.|++|+++
T Consensus 327 ~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 327 VGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp SEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEEC
T ss_pred hhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEecc
Confidence 344555 6677887755 4 67799999999999999963
No 35
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.2e-34 Score=218.93 Aligned_cols=207 Identities=17% Similarity=0.212 Sum_probs=170.8
Q ss_pred eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649 11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM 90 (250)
Q Consensus 11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (250)
+....++ +|.+.|.+++|+|+++ +|+||+.||+|++||..+++....+..+ ...|.+++|+|
T Consensus 55 ~~~~~l~-gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~~~~~-------------~~~v~~~~~sp--- 116 (354)
T 2pbi_B 55 KTRRTLK-GHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHAVTMP-------------CTWVMACAYAP--- 116 (354)
T ss_dssp CEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECS-------------SSCCCEEEECT---
T ss_pred EEEEEec-CCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceEEecC-------------CCCEEEEEECC---
Confidence 4567788 9999999999999999 8999999999999999888877766633 56799999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCCce------eEeeccCCCCCCccceeecccceeEEEe---eeeeeccCeeeeeeccc
Q 025649 91 LDKTNKICVVAKGDGVVDVINIESEL------NISRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSGGKRLHLDYSV 161 (250)
Q Consensus 91 ~~~~~~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 161 (250)
++.++++++.|+.+++|++.... ....+ ..+...+.++.|+|++..+++. +....++....+.+..+
T Consensus 117 ---~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 117 ---SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp ---TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ---CCCEEEEeeCCCCEEEEEEeccccccccccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999987532 11112 2245778999999999988842 12233344455567788
Q ss_pred cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC
Q 025649 162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 241 (250)
Q Consensus 162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 241 (250)
.+|...|.+++|+|. +++++|++|+.||.|++||++++ ..+..+.+|...|++++|+| ++.+|++|+.|
T Consensus 193 ~~h~~~v~~~~~~~~-~~g~~l~sgs~Dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D 261 (354)
T 2pbi_B 193 HGHGADVLCLDLAPS-ETGNTFVSGGCDKKAMVWDMRSG---------QCVQAFETHESDVNSVRYYP-SGDAFASGSDD 261 (354)
T ss_dssp ECCSSCEEEEEECCC-SSCCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred cCCCCCeEEEEEEeC-CCCCEEEEEeCCCeEEEEECCCC---------cEEEEecCCCCCeEEEEEeC-CCCEEEEEeCC
Confidence 999999999999831 25789999999999999999997 56667789999999999998 88999999999
Q ss_pred ceEEEEeCC
Q 025649 242 KVVKVYSIS 250 (250)
Q Consensus 242 ~~i~vw~~~ 250 (250)
+.|++||++
T Consensus 262 ~~v~lwd~~ 270 (354)
T 2pbi_B 262 ATCRLYDLR 270 (354)
T ss_dssp SCEEEEETT
T ss_pred CeEEEEECC
Confidence 999999974
No 36
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-34 Score=221.11 Aligned_cols=219 Identities=9% Similarity=0.039 Sum_probs=161.6
Q ss_pred cEEEEcccceeee----eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649 2 WQIIDIRQHCLYK----SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 2 i~iwd~~~~~~~~----~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|++|+..+++... ... +|...|.+++|+|++. +++++.||+|++||+.+++........ ...|.
T Consensus 72 v~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~s~d~~--~l~~s~dg~v~lWd~~~~~~~~~~~~~---------~~~h~ 139 (357)
T 4g56_B 72 IWVFKDPEGAPNESLCTAGV-QTEAGVTDVAWVSEKG--ILVASDSGAVELWEILEKESLLVNKFA---------KYEHD 139 (357)
T ss_dssp EEEESSCC---CGGGCSEEE-ECSSCEEEEEEETTTE--EEEEETTSCEEEC--------CCCCEE---------ECCCS
T ss_pred EEEEECCCCCcceeEecccC-CCCCCEEEEEEcCCCC--EEEEECCCEEEEeeccccceeEEEeec---------cCCCC
Confidence 6788877665432 334 6999999999999985 667888999999999887754433211 11267
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCe
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGK 153 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 153 (250)
..|.+++|+| ++++|++++.|+.|++||+++++....+..+ ...+.+++|+|++..++..+..| .++..
T Consensus 140 ~~V~~v~~sp------dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~ 212 (357)
T 4g56_B 140 DIVKTLSVFS------DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH-SSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212 (357)
T ss_dssp SCEEEEEECS------SSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTCSSCEEEEETTSCEEECCTT
T ss_pred CCEEEEEECC------CCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEccCCCceeeeeccCCceEEEECC
Confidence 8999999999 9999999999999999999999888777654 47899999999986443233332 22333
Q ss_pred eeeeec--cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649 154 RLHLDY--SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 231 (250)
Q Consensus 154 ~~~~~~--~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 231 (250)
..+... .+..|...+.+++|+| .++.+|++|+.|+.|++||++++ +.+..+.+|...|++++|+|.+
T Consensus 213 ~~~~~~~~~~~~~~~~v~~v~~sp--~~~~~la~g~~d~~i~~wd~~~~---------~~~~~~~~~~~~v~~l~~sp~~ 281 (357)
T 4g56_B 213 KPKPATRIDFCASDTIPTSVTWHP--EKDDTFACGDETGNVSLVNIKNP---------DSAQTSAVHSQNITGLAYSYHS 281 (357)
T ss_dssp SSSCBCBCCCTTCCSCEEEEEECT--TSTTEEEEEESSSCEEEEESSCG---------GGCEEECCCSSCEEEEEECSSS
T ss_pred CCceeeeeeeccccccccchhhhh--cccceEEEeecccceeEEECCCC---------cEeEEEeccceeEEEEEEcCCC
Confidence 333322 3345778899999994 24678999999999999999997 5566778999999999999855
Q ss_pred CCeEEEeeCCceEEEEeCC
Q 025649 232 SENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 232 ~~~l~s~~~d~~i~vw~~~ 250 (250)
+++|++|+.|++|+|||++
T Consensus 282 ~~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 282 SPFLASISEDCTVAVLDAD 300 (357)
T ss_dssp SCCEEEEETTSCEEEECTT
T ss_pred CCEEEEEeCCCEEEEEECC
Confidence 5789999999999999974
No 37
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.8e-33 Score=214.05 Aligned_cols=209 Identities=19% Similarity=0.242 Sum_probs=164.6
Q ss_pred eeeeeeccCCCCCeeeEEE-----cC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEe
Q 025649 11 CLYKSLRAGHSSICSSVQF-----IP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA 84 (250)
Q Consensus 11 ~~~~~l~~~h~~~v~~l~~-----~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 84 (250)
++...|+ +|.+.|++++| ++ +++ +|++|+.|++|++||+.+.+....... .......|...|.+++
T Consensus 12 ~~~~~l~-gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~~~------~~~~l~~h~~~V~~~~ 83 (343)
T 2xzm_R 12 VKRGILE-GHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFGI------PHKALTGHNHFVSDLA 83 (343)
T ss_dssp EEEEEEE-CCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBSEE------EEEEECCCSSCEEEEE
T ss_pred eeeeeec-cchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccccc------ccchhccCCCceEEEE
Confidence 4567888 99999999999 76 788 899999999999999976532111000 0001122678999999
Q ss_pred cCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeeeccCeeeeee
Q 025649 85 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQSGGKRLHLD 158 (250)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 158 (250)
|+| ++.++++++.|++|++||+++++....+..+ ...+.+++|+|+++++++. ..|+.. .......
T Consensus 84 ~~~------~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~ 155 (343)
T 2xzm_R 84 LSQ------ENCFAISSSWDKTLRLWDLRTGTTYKRFVGH-QSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSS 155 (343)
T ss_dssp ECS------STTEEEEEETTSEEEEEETTSSCEEEEEECC-CSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEEC
T ss_pred ECC------CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC-CCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeee
Confidence 998 9999999999999999999998877766554 4789999999999999852 233332 1112222
Q ss_pred ccccCccccEEEEEeecCCCCC----------cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649 159 YSVGGHTAAASCVAFSMFGERG----------KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 228 (250)
Q Consensus 159 ~~~~~h~~~v~~~~~~p~~~~~----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 228 (250)
....+|...|.+++|+ |++ .+|++++.|+.|++||... .....+.+|...|.+++|+
T Consensus 156 ~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~h~~~v~~~~~s 222 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYS---PIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----------QIRYTFKAHESNVNHLSIS 222 (343)
T ss_dssp CTTTSCSSCEEEEEEC---CCCCSCSCCCSSCCEEEEEETTSEEEEEETTT----------EEEEEEECCSSCEEEEEEC
T ss_pred ecccCCCceeeeeeec---cccccccccCCCCCEEEEEcCCCEEEEEcCCC----------ceeEEEcCccccceEEEEC
Confidence 3345789999999999 554 7999999999999999543 4556778999999999999
Q ss_pred CCCCCeEEEeeCCceEEEEeC
Q 025649 229 PTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 229 ~~~~~~l~s~~~d~~i~vw~~ 249 (250)
| ++++|++|+.||.|++||+
T Consensus 223 ~-~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 223 P-NGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp T-TSSEEEEEETTCEEEEEES
T ss_pred C-CCCEEEEEcCCCeEEEEEC
Confidence 8 8999999999999999997
No 38
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-34 Score=222.10 Aligned_cols=217 Identities=14% Similarity=0.055 Sum_probs=167.7
Q ss_pred CcEEEEcccc--eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC---CccceecCCCCCCCCCCccc
Q 025649 1 MWQIIDIRQH--CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 1 ti~iwd~~~~--~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~ 75 (250)
+|+|||+.++ +.+..+. +|...|.+++|+|+++ +|++++.|++|++||+.+++ ....+. +
T Consensus 34 ~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~-~l~s~s~d~~v~vwd~~~~~~~~~~~~~~-~------------ 98 (377)
T 3dwl_C 34 QVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSN-RIVTCSQDRNAYVYEKRPDGTWKQTLVLL-R------------ 98 (377)
T ss_dssp CBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTC-CEEEEETTSSEEEC------CCCCEEECC-C------------
T ss_pred EEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEec-c------------
Confidence 5899999988 7888999 9999999999999998 89999999999999999876 222222 2
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee---EeeccCCCCCCccceeecccceeEEE------eee
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN---ISRSKSTTKPLKGSQSTSKVNIRDAE------MEI 146 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 146 (250)
|...|.+++|+| ++++|++++.|+.|++||+++++. ...+...+...+.+++|+|+++++++ +..
T Consensus 99 ~~~~v~~~~~~~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~i 172 (377)
T 3dwl_C 99 LNRAATFVRWSP------NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172 (377)
T ss_dssp CSSCEEEEECCT------TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEE
T ss_pred cCCceEEEEECC------CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEE
Confidence 578899999999 999999999999999999998763 44555546689999999999999984 223
Q ss_pred eeeccC---------------eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccce
Q 025649 147 LDQSGG---------------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 211 (250)
Q Consensus 147 ~~~~~~---------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 211 (250)
|+.... ...+++..+ +|...|.+++|+ |++++|++++.||.|++||++++.... ..
T Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s---p~~~~l~~~~~d~~i~iwd~~~~~~~~-----~~ 243 (377)
T 3dwl_C 173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS---PSGNALAYAGHDSSVTIAYPSAPEQPP-----RA 243 (377)
T ss_dssp EEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC---TTSSCEEEEETTTEEC-CEECSTTSCE-----EE
T ss_pred EEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC---CCCCEEEEEeCCCcEEEEECCCCCCcc-----ee
Confidence 443211 134556667 899999999999 899999999999999999999974311 12
Q ss_pred eeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 212 LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 212 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+..+.+|...|.+++|+| ++++|++|+.++.+ +|+.
T Consensus 244 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LLQG 279 (377)
T ss_dssp CCCEECSSSCEEEEEEEE-TTEEEEEESSSSEE-EECC
T ss_pred eEeecCCCCceEEEEEcC-CCCEEEEEcCCcEE-EEEe
Confidence 567788999999999998 88899998877766 6654
No 39
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.8e-34 Score=226.16 Aligned_cols=210 Identities=15% Similarity=0.202 Sum_probs=164.7
Q ss_pred eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649 12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML 91 (250)
Q Consensus 12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (250)
...... +|...|++|+|+|.+..+||+|+.||+|+|||+.+++....+... .|...|.+++|+|
T Consensus 111 ~~~~~~-~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~-----------gH~~~V~~l~f~p---- 174 (435)
T 4e54_B 111 ILQKAA-PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-----------GAGGSITGLKFNP---- 174 (435)
T ss_dssp SCCEEE-ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCC-----------SSSCCCCEEEECS----
T ss_pred ecccCC-CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEcc-----------CCCCCEEEEEEeC----
Confidence 344556 789999999999965448999999999999999887655544321 1778999999998
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCceeEeeccC-CCCCCccceeecccceeEEEeeeeeec----cCeeeeeeccccCccc
Q 025649 92 DKTNKICVVAKGDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDYSVGGHTA 166 (250)
Q Consensus 92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~ 166 (250)
.++++|++++.||+|++||++++........ .....+.+++|+|++.++++ +..+.. +. ..+.+..+.+|..
T Consensus 175 -~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~dg~i~~wd~-~~~~~~~~~~h~~ 251 (435)
T 4e54_B 175 -LNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVT-GDNVGNVILLNM-DGKELWNLRMHKK 251 (435)
T ss_dssp -SCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEE-ECSSSBEEEEES-SSCBCCCSBCCSS
T ss_pred -CCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEE-EeCCCcEeeecc-CcceeEEEecccc
Confidence 4688999999999999999987654433322 23356788999999999984 332222 11 2245667889999
Q ss_pred cEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649 167 AASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 245 (250)
Q Consensus 167 ~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 245 (250)
.|.+++|+ |+++ +|++|+.|+.|++||+++.... ..+....+|...|++++|+| ++++|++++.||.|+
T Consensus 252 ~v~~v~~~---p~~~~~~~s~s~d~~v~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~ 321 (435)
T 4e54_B 252 KVTHVALN---PCCDWFLATASVDQTVKIWDLRQVRGK------ASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIR 321 (435)
T ss_dssp CEEEEEEC---TTCSSEEEEEETTSBCCEEETTTCCSS------SCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEE
T ss_pred eEEeeeec---CCCceEEEEecCcceeeEEeccccccc------ceEEEeeeccccccceeECC-CCCeeEEEcCCCEEE
Confidence 99999999 6654 8889999999999999986433 22334568999999999998 899999999999999
Q ss_pred EEeCC
Q 025649 246 VYSIS 250 (250)
Q Consensus 246 vw~~~ 250 (250)
+||++
T Consensus 322 iwd~~ 326 (435)
T 4e54_B 322 VYSAS 326 (435)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99974
No 40
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=212.65 Aligned_cols=229 Identities=10% Similarity=0.043 Sum_probs=171.0
Q ss_pred CcEEEEcccceeeeeec-cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCC-------------
Q 025649 1 MWQIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE------------- 66 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~------------- 66 (250)
+|+|||+++++++..++ .+|...|++++|+|+++ +|++|+.||+|++||+++++.+..+..+...
T Consensus 46 tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s 124 (318)
T 4ggc_A 46 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSS 124 (318)
T ss_dssp EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEE
Confidence 58999999999888765 26788999999999999 8999999999999999998877666532110
Q ss_pred ---------------CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe---eccCCCCCC
Q 025649 67 ---------------NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS---RSKSTTKPL 128 (250)
Q Consensus 67 ---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~---~~~~~~~~~ 128 (250)
.........|...+..+.+.+ +++++++++.|+.|++||+++++... .........
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 198 (318)
T 4ggc_A 125 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP------DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 198 (318)
T ss_dssp EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT------TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSC
T ss_pred EecCCceEeeecCCCceeEEEEcCccCceEEEEEcC------CCCEEEEEecCcceeEEECCCCcccccceeeecccCCc
Confidence 000011233566778888887 89999999999999999999865332 222333467
Q ss_pred ccceeecccceeEEEeee------eeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEe--eCCCeEEEEecCCC
Q 025649 129 KGSQSTSKVNIRDAEMEI------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG--GNDKLVKVWDCSRF 200 (250)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~--~~d~~i~iwd~~~~ 200 (250)
+..+.++|++..++.... ...++........ ...+...+..+.|+ +++..++++ +.|+.|++||++++
T Consensus 199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-~~~~~~~v~~~~~~---~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-AVDAHSQVCSILWS---PHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp EEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-EEECSSCEEEEEEE---TTTTEEEEEECTTTCCEEEEETTTC
T ss_pred eEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-cccceeeeeeeeec---ccccceEEEEEcCCCEEEEEECCCC
Confidence 888889887765542211 1112222222222 23456778999999 777777654 47999999999998
Q ss_pred cceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 201 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+++..+.+|.+.|++++|+| ++++|+||+.||+|+|||+.
T Consensus 275 ---------~~~~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 275 ---------AKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCF 314 (318)
T ss_dssp ---------CEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred ---------cEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence 67778889999999999998 89999999999999999973
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-33 Score=220.44 Aligned_cols=218 Identities=15% Similarity=0.167 Sum_probs=179.4
Q ss_pred CcEEEEccc----ceeeeeeccCCCCCeeeEEEcCC-CCeEEEEecCCCeEEEEEccCCC------CccceecCCCCCCC
Q 025649 1 MWQIIDIRQ----HCLYKSLRAGHSSICSSVQFIPW-KPWEVISGGLDSKLVMWDFSKGR------PNKIVNFGLPENNG 69 (250)
Q Consensus 1 ti~iwd~~~----~~~~~~l~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~iwd~~~~~------~~~~~~~~~~~~~~ 69 (250)
+|++||+.+ .+.+..+. +|...|.+++|+|+ +. +|++++.||.|++||+.+++ ....+.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-------- 159 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDN-VLASGGNNGEIFIWDMNKCTESPSNYTPLTPG-------- 159 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTT-BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC--------
T ss_pred eEEEeecccccccccchhhcc-CCccceEEEEEcCCCCC-EEEEEcCCCeEEEEECCCCccccccccccccc--------
Confidence 589999987 45788888 99999999999998 66 89999999999999998876 222221
Q ss_pred CCCcccCCCceeEEecCCCcccCCC-CCEEEEEeCCCeEEEEeCCCceeEeeccCCC-----CCCccceeecccce-eEE
Q 025649 70 NAGQCYNPAFVHAIAIPDADMLDKT-NKICVVAKGDGVVDVINIESELNISRSKSTT-----KPLKGSQSTSKVNI-RDA 142 (250)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~ 142 (250)
....|...|.+++|+| + +.+|++++.|+.|++||+++++....+.... ...+.+++|+|++. +++
T Consensus 160 --~~~~~~~~v~~~~~~~------~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 160 --QSMSSVDEVISLAWNQ------SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp --CSCCSSCCCCEEEECS------SCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred --cccCCCCCeeEEEeCC------CCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 1122677899999998 7 7899999999999999999988877766553 57899999999985 455
Q ss_pred Eeeeeee---c----cCee-eeeecccc-CccccEEEEEeecCCC-CCcEEEEeeCCCeEEEEecCCCcceeccccccee
Q 025649 143 EMEILDQ---S----GGKR-LHLDYSVG-GHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL 212 (250)
Q Consensus 143 ~~~~~~~---~----~~~~-~~~~~~~~-~h~~~v~~~~~~p~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 212 (250)
.+..+. . +... ..++..+. +|...|.+++|+ | ++++|++++.|+.|++||++++ +.+
T Consensus 232 -~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~~l~s~~~dg~v~~wd~~~~---------~~~ 298 (416)
T 2pm9_A 232 -TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWC---HQDEHLLLSSGRDNTVLLWNPESA---------EQL 298 (416)
T ss_dssp -EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEEC---SSCSSCEEEEESSSEEEEECSSSC---------CEE
T ss_pred -EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeC---CCCCCeEEEEeCCCCEEEeeCCCC---------ccc
Confidence 444443 2 2222 24556777 899999999999 6 8999999999999999999997 666
Q ss_pred eeeeccCCceeEEEecCCCC-CeEEEeeCCceEEEEeCC
Q 025649 213 IKNINLNKKVNWLCTTPTES-ENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 213 ~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~i~vw~~~ 250 (250)
..+..|...|.+++|+| ++ .+|++++.|+.|++||++
T Consensus 299 ~~~~~~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 299 SQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp EEEECSSSCCCCEEECT-TCTTEEEECCSSSEEEEEESC
T ss_pred eeecCCCCceEEEEECC-CCCCEEEEEecCCcEEEEEcc
Confidence 77889999999999998 55 899999999999999974
No 42
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.2e-33 Score=219.07 Aligned_cols=224 Identities=12% Similarity=0.125 Sum_probs=167.3
Q ss_pred CcEEEEcccceeeeeec-cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+|+|||..++++...+. .+|...|++|+|+|+|+ +|++|+.||+|++||+++++.+..+. + |...
T Consensus 126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~~~~~~~~~-~------------h~~~ 191 (420)
T 4gga_A 126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNMT-S------------HSAR 191 (420)
T ss_dssp EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEEC-C------------CSSC
T ss_pred EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEcCCCcEEEEEe-C------------CCCc
Confidence 58999999999877665 26788999999999999 89999999999999999998888776 3 4677
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee------eeeeccCe
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGK 153 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 153 (250)
+.++.+ ++.+|++|+.|+.+++||.............+...+..+.++|++.++++.+ .++.....
T Consensus 192 v~~~s~--------~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 192 VGSLSW--------NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp EEEEEE--------ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred eEEEee--------CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence 777765 4689999999999999999876555444444457788889999998888421 23322211
Q ss_pred -eeeeeccccCccccEEEEEeecCCCCCcEEEE--eeCCCeEEEEecCCCcceec-------------------------
Q 025649 154 -RLHLDYSVGGHTAAASCVAFSMFGERGKYLIS--GGNDKLVKVWDCSRFQGVQT------------------------- 205 (250)
Q Consensus 154 -~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~------------------------- 205 (250)
....+.....|...|.+++|+| .+..++++ |+.|++|++||++++.....
T Consensus 264 ~~~~~~~~~~~~~~~V~~~~~~p--~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~ 341 (420)
T 4gga_A 264 GGWVPLQTFTQHQGAVKAVAWCP--WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 341 (420)
T ss_dssp SCSCCSEEECCCSSCEEEEEECT--TCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred ccceeeeeecccCCceeeeeeCC--CcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEec
Confidence 1123345566777788888874 23344444 34677777777776543320
Q ss_pred ---------ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 206 ---------SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 206 ---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
....+++..+.+|.+.|++++|+| ||++|+||+.|++|+|||+
T Consensus 342 ~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 342 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRC 393 (420)
T ss_dssp TTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECC
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEEC
Confidence 011355667789999999999998 8999999999999999997
No 43
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2e-33 Score=232.08 Aligned_cols=224 Identities=21% Similarity=0.223 Sum_probs=172.4
Q ss_pred CcEEEEcccc-----eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649 1 MWQIIDIRQH-----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 1 ti~iwd~~~~-----~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
+|+|||+.+. .....+. +|...|.+++|+|+++ +|++|+.||+|++||+.+++.+..+. +
T Consensus 406 ~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~-~l~sgs~Dg~v~vwd~~~~~~~~~~~-~------------ 470 (694)
T 3dm0_A 406 SIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQ-FALSGSWDGELRLWDLAAGVSTRRFV-G------------ 470 (694)
T ss_dssp EEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE-C------------
T ss_pred cEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCC-EEEEEeCCCcEEEEECCCCcceeEEe-C------------
Confidence 5899998753 4556788 9999999999999999 89999999999999999988877776 3
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec--cCCCCCCccceeecccc--eeEEEeeeeee--
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS--KSTTKPLKGSQSTSKVN--IRDAEMEILDQ-- 149 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-- 149 (250)
|...|.+++|+| ++++|++++.|++|++||.......... ...+...+.+++|+|++ ..++ .+..|.
T Consensus 471 h~~~v~~~~~s~------~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d~~v 543 (694)
T 3dm0_A 471 HTKDVLSVAFSL------DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV-SASWDKTV 543 (694)
T ss_dssp CSSCEEEEEECT------TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE-EEETTSCE
T ss_pred CCCCEEEEEEeC------CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE-EEeCCCeE
Confidence 578899999999 9999999999999999998765433322 23345679999999987 3455 333222
Q ss_pred --ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccc-------------------
Q 025649 150 --SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN------------------- 208 (250)
Q Consensus 150 --~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------------------- 208 (250)
++....+....+.+|.+.|.+++|+ |++++|++|+.||.|++||++++........
T Consensus 544 ~vwd~~~~~~~~~~~~h~~~v~~v~~s---pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 620 (694)
T 3dm0_A 544 KVWNLSNCKLRSTLAGHTGYVSTVAVS---PDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA 620 (694)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEe---CCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE
Confidence 2333445567788999999999999 8999999999999999999988765431110
Q ss_pred ------------cceeeeeec-------------------cCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 209 ------------NDLLIKNIN-------------------LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 209 ------------~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
...+..+.. +...+.+++|+| ++++|++|+.||.|++|++.
T Consensus 621 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 621 TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence 011111110 011267889998 89999999999999999974
No 44
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.7e-34 Score=219.13 Aligned_cols=221 Identities=12% Similarity=0.031 Sum_probs=177.7
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+|++||+.+++.+..+. +|...|.+++|+| ++. +|++|+.||.|++||+++++.+..+.. ...|...
T Consensus 96 ~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~~ 163 (366)
T 3k26_A 96 IIRIINPITMQCIKHYV-GHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFGG----------VEGHRDE 163 (366)
T ss_dssp EEEEECTTTCCEEEEEE-SCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEECS----------TTSCSSC
T ss_pred EEEEEEchhceEeeeec-CCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEecc----------cccccCc
Confidence 48999999999999999 9999999999999 777 899999999999999998887776631 0116789
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC---------------------------CCCCCccce
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS---------------------------TTKPLKGSQ 132 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---------------------------~~~~~~~~~ 132 (250)
|.+++|+| ++++|++++.||.|++||+++++....+.. .+...+.++
T Consensus 164 v~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 237 (366)
T 3k26_A 164 VLSADYDL------LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 237 (366)
T ss_dssp EEEEEECT------TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEE
T ss_pred eeEEEECC------CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEE
Confidence 99999999 999999999999999999998654432221 145778889
Q ss_pred eecccceeEEE------eeeeeeccCe-----------eeeeeccccCccccEEEEEeecCCCC--CcEEEEeeCCCeEE
Q 025649 133 STSKVNIRDAE------MEILDQSGGK-----------RLHLDYSVGGHTAAASCVAFSMFGER--GKYLISGGNDKLVK 193 (250)
Q Consensus 133 ~~~~~~~~~~~------~~~~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~~p~~~~--~~~l~s~~~d~~i~ 193 (250)
+|+ +.++++ +..|+..... ....+..+.+|...|.+++|+ |+ +++|++|+.||.|+
T Consensus 238 ~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~~~l~~~~~dg~i~ 312 (366)
T 3k26_A 238 RWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS---MDFWQKMLALGNQVGKLY 312 (366)
T ss_dssp EEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE---ECTTSSEEEEECTTSCEE
T ss_pred EEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc---CCCCCcEEEEEecCCcEE
Confidence 998 556663 2334443221 124466778899999999999 78 99999999999999
Q ss_pred EEecCCCcceecccccceeeeeecc--CCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 194 VWDCSRFQGVQTSINNDLLIKNINL--NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 194 iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+||++++.... .....+..| ...|.+++|+| ++++|++++.||.|++||+.
T Consensus 313 vwd~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 313 VWDLEVEDPHK-----AKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEECCSSSGGG-----CEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred EEECCCCCCcc-----ccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEec
Confidence 99999875432 233456666 78999999998 89999999999999999974
No 45
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=214.42 Aligned_cols=223 Identities=14% Similarity=0.130 Sum_probs=181.0
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+.+++.+..+. +|...|.+++|+|+++ +|++++.||.|++||+.+++.+..+. +...+
T Consensus 55 ~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~~~~v 118 (369)
T 3zwl_B 55 SASVWYSLNGERLGTLD-GHTGTIWSIDVDCFTK-YCVTGSADYSIKLWDVSNGQCVATWK--------------SPVPV 118 (369)
T ss_dssp CEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEEEE--------------CSSCE
T ss_pred EEEEEeCCCchhhhhhh-hcCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEee--------------cCCCe
Confidence 58999999999999999 9999999999999999 89999999999999999999888877 35789
Q ss_pred eEEecCCCcccCCCCCEEEEEeCC-----CeEEEEeCCCceeEee-----------ccC-CCCCCccceeecccceeEEE
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGD-----GVVDVINIESELNISR-----------SKS-TTKPLKGSQSTSKVNIRDAE 143 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~ 143 (250)
.+++|+| +++++++++.+ +.|++||+..+..... ... .....+.+++|+|+++++++
T Consensus 119 ~~~~~~~------~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (369)
T 3zwl_B 119 KRVEFSP------CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA 192 (369)
T ss_dssp EEEEECT------TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEE
T ss_pred EEEEEcc------CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEE
Confidence 9999999 99999999998 9999999986532111 111 11137899999999999984
Q ss_pred eeeee----eccCee-eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc------------
Q 025649 144 MEILD----QSGGKR-LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS------------ 206 (250)
Q Consensus 144 ~~~~~----~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------ 206 (250)
+..+ .++... .+.+..+..|...|.+++|+ |++++|++++.|+.|++||++++......
T Consensus 193 -~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 268 (369)
T 3zwl_B 193 -GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS---PDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVIT 268 (369)
T ss_dssp -EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred -EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC---CCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEec
Confidence 3222 222222 45566788899999999999 89999999999999999999886544211
Q ss_pred ----------------------------------cccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 207 ----------------------------------INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 207 ----------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
...+.+..+.+|...|.+++|+| ++++|++++.||.|++|+++
T Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp SSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEEC
T ss_pred CCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECc
Confidence 01123345567999999999998 89999999999999999974
No 46
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-33 Score=216.85 Aligned_cols=216 Identities=13% Similarity=0.071 Sum_probs=179.6
Q ss_pred CcEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|++||+.+++ .+..+. +|...|.+++|+|+++ +|++++.||.|++||+++++....+... .+..
T Consensus 31 ~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~~ 97 (372)
T 1k8k_C 31 EVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVIL-----------RINR 97 (372)
T ss_dssp EEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTT-EEEEEETTSCEEEEEEETTEEEEEEECC-----------CCSS
T ss_pred EEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCC-EEEEEcCCCeEEEEECCCCeeeeeEEee-----------cCCC
Confidence 48999999887 888999 9999999999999999 8999999999999999887754444321 1567
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee---EeeccCCCCCCccceeecccceeEEEe------eeeee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN---ISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQ 149 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 149 (250)
.|.+++|+| ++++|++++.|+.|++||++.+.. .......+...+.+++|+|+++++++. ..|+.
T Consensus 98 ~v~~~~~~~------~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 98 AARCVRWAP------NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp CEEEEEECT------TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred ceeEEEECC------CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence 899999999 999999999999999999988653 334444556889999999999998852 23442
Q ss_pred cc---------------CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 025649 150 SG---------------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 214 (250)
Q Consensus 150 ~~---------------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 214 (250)
.. ....+.+..+.+|...|.+++|+ |++++|++++.|+.|++||++++ +.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~---------~~~~~ 239 (372)
T 1k8k_C 172 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS---ANGSRVAWVSHDSTVCLADADKK---------MAVAT 239 (372)
T ss_dssp CCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC---SSSSEEEEEETTTEEEEEEGGGT---------TEEEE
T ss_pred ccccccccccccccccccchhhheEecCCCCCeEEEEEEC---CCCCEEEEEeCCCEEEEEECCCC---------ceeEE
Confidence 21 12345566778899999999999 89999999999999999999987 56677
Q ss_pred eeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 215 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 215 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+..|...|.+++|+| ++.++++| .|+.|++|++
T Consensus 240 ~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 240 LASETLPLLAVTFIT-ESSLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp EECSSCCEEEEEEEE-TTEEEEEE-TTSSCEEEEE
T ss_pred EccCCCCeEEEEEec-CCCEEEEE-eCCeEEEEEc
Confidence 788999999999998 78777777 8999999996
No 47
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-33 Score=214.51 Aligned_cols=220 Identities=19% Similarity=0.229 Sum_probs=175.8
Q ss_pred CcEEEEcc--cceeeeeeccCCCCCeeeEEEcCC--CCeEEEEecCCCeEEEEEccCCC--CccceecCCCCCCCCCCcc
Q 025649 1 MWQIIDIR--QHCLYKSLRAGHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKGR--PNKIVNFGLPENNGNAGQC 74 (250)
Q Consensus 1 ti~iwd~~--~~~~~~~l~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~ 74 (250)
+|+|||+. +++.+..+. +|...|.+++|+++ +. +|++|+.||.|++||+.+++ .+..+. .
T Consensus 34 ~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~----------- 99 (379)
T 3jrp_A 34 TIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGT-ILASCSYDGKVLIWKEENGRWSQIAVHA-V----------- 99 (379)
T ss_dssp CEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCS-EEEEEETTSCEEEEEEETTEEEEEEEEC-C-----------
T ss_pred cEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCC-EEEEeccCCEEEEEEcCCCceeEeeeec-C-----------
Confidence 58999998 778888999 99999999999977 77 89999999999999999886 333333 2
Q ss_pred cCCCceeEEecCCCcccCCC--CCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeecc-------------cc
Q 025649 75 YNPAFVHAIAIPDADMLDKT--NKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSK-------------VN 138 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~ 138 (250)
|...|.+++|+| + +++|++++.|+.|++||++.+... ......+...+.+++|+| ++
T Consensus 100 -~~~~v~~~~~~~------~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T 3jrp_A 100 -HSASVNSVQWAP------HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 172 (379)
T ss_dssp -CSSCEEEEEECC------GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTT
T ss_pred -CCcceEEEEeCC------CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence 567899999999 7 899999999999999999986432 222233457899999999 68
Q ss_pred eeEEE------eeeeeeccC-eeeeeeccccCccccEEEEEeecCCCC---CcEEEEeeCCCeEEEEecCCCcceecccc
Q 025649 139 IRDAE------MEILDQSGG-KRLHLDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQGVQTSIN 208 (250)
Q Consensus 139 ~~~~~------~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 208 (250)
.++++ +..|+.... ........+.+|...|.+++|+ |+ +++|++++.||.|++||++++.....
T Consensus 173 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~s---p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--- 246 (379)
T 3jrp_A 173 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS---PTVLLRSYLASVSQDRTCIIWTQDNEQGPWK--- 246 (379)
T ss_dssp CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC---CCCSSSEEEEEEETTSCEEEEEESSTTSCCE---
T ss_pred CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEEC---CCCCCCCeEEEEeCCCEEEEEeCCCCCccce---
Confidence 88874 223444332 2334566788999999999999 78 89999999999999999998642210
Q ss_pred cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 209 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
..+.....|...|.+++|+| ++++|++++.||.|++|++
T Consensus 247 -~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 247 -KTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp -EEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEEE
T ss_pred -eeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEeC
Confidence 12223345888999999998 8999999999999999996
No 48
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.7e-34 Score=214.00 Aligned_cols=207 Identities=15% Similarity=0.151 Sum_probs=156.3
Q ss_pred eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC--ccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649 15 SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD 92 (250)
Q Consensus 15 ~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 92 (250)
.+. +|.+.|++++|+|+++ +|++|+.|++|++||+++++. +..+. + |...|.+++|+| +
T Consensus 8 ~~~-~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~~~l~-g------------H~~~V~~v~~~~----~ 68 (316)
T 3bg1_A 8 VDT-SHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILIADLR-G------------HEGPVWQVAWAH----P 68 (316)
T ss_dssp -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEEEEEE-C------------CSSCEEEEEECC----G
T ss_pred ecc-cccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEEEEEc-C------------CCccEEEEEeCC----C
Confidence 345 9999999999999999 899999999999999987643 34444 3 688999999986 1
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCce--eEeeccCCCCCCccceeeccc--ceeEEE------eeeeeeccCeeeeeecccc
Q 025649 93 KTNKICVVAKGDGVVDVINIESEL--NISRSKSTTKPLKGSQSTSKV--NIRDAE------MEILDQSGGKRLHLDYSVG 162 (250)
Q Consensus 93 ~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~ 162 (250)
.++++|++|+.|++|++||++++. ....+ ..+...+.+++|+|+ +.++++ +..|+............+.
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~ 147 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN 147 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT
T ss_pred CCCCEEEEEECCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec
Confidence 248999999999999999999864 22333 334578999999998 777773 2233333322233356678
Q ss_pred CccccEEEEEeecCCCC-----------------CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649 163 GHTAAASCVAFSMFGER-----------------GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 225 (250)
Q Consensus 163 ~h~~~v~~~~~~p~~~~-----------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (250)
+|...|.+++|+ |+ +++|++|+.|+.|++||++..... ..+..+.+|...|.++
T Consensus 148 ~h~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~------~~~~~l~~h~~~V~~v 218 (316)
T 3bg1_A 148 AHTIGCNAVSWA---PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW------KEEQKLEAHSDWVRDV 218 (316)
T ss_dssp SSSSCBCCCEEC---CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE------EEEECCBCCSSCEEEE
T ss_pred cccCCcceEEEc---cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc------ceeeecccCCCceEEE
Confidence 899999999999 44 478999999999999999754211 2445677899999999
Q ss_pred EecCCC---CCeEEEeeCCceEEEEeCC
Q 025649 226 CTTPTE---SENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 226 ~~~~~~---~~~l~s~~~d~~i~vw~~~ 250 (250)
+|+|.. +++|++|+.|++|++|+++
T Consensus 219 ~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 219 AWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred EecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 999832 3789999999999999863
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.6e-33 Score=215.06 Aligned_cols=221 Identities=11% Similarity=0.084 Sum_probs=177.6
Q ss_pred CcEEEEccccee-----eeeeccCC-----CCCeeeEEEc----CCCCeE-EEEecCCCeEEEEEccC------CCCcc-
Q 025649 1 MWQIIDIRQHCL-----YKSLRAGH-----SSICSSVQFI----PWKPWE-VISGGLDSKLVMWDFSK------GRPNK- 58 (250)
Q Consensus 1 ti~iwd~~~~~~-----~~~l~~~h-----~~~v~~l~~~----~~~~~~-l~s~s~dg~v~iwd~~~------~~~~~- 58 (250)
+|++||+.+++. +..+. +| ...|.+++|+ |+++ + |++++.||.|++||+++ ++.+.
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 169 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPFADESNSLTLNW 169 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCccccccccceeec
Confidence 589999998887 88888 88 5999999999 9999 8 99999999999999998 66665
Q ss_pred ----ceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC--C---CCCc
Q 025649 59 ----IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST--T---KPLK 129 (250)
Q Consensus 59 ----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~---~~~~ 129 (250)
.+... ......+...+.+++|+| ++ ++++++.|+.|++||+++++....+... + ...+
T Consensus 170 ~~~~~~~~~------~~~~~~~~~~i~~~~~~~------~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 170 SPTLELQGT------VESPMTPSQFATSVDISE------RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp CCEEEEEEE------ECCSSSSCCCCCEEEECT------TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred cCcceeeee------eccccCCCCCceEEEECC------Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence 44310 000011567899999999 88 9999999999999999998877776651 2 5789
Q ss_pred cceeecccceeEEEeeeee-------eccCeeeeeeccccC-------------ccccEEEEEeecCCCCCcEEEEeeCC
Q 025649 130 GSQSTSKVNIRDAEMEILD-------QSGGKRLHLDYSVGG-------------HTAAASCVAFSMFGERGKYLISGGND 189 (250)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------------h~~~v~~~~~~p~~~~~~~l~s~~~d 189 (250)
.+++|+|+++++++ +..+ .++....+.+..+.+ |...|.+++|+ |++++|++++.|
T Consensus 237 ~~i~~~~~~~~l~~-~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d 312 (397)
T 1sq9_A 237 RSVKFSPQGSLLAI-AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN---DSGETLCSAGWD 312 (397)
T ss_dssp EEEEECSSTTEEEE-EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC---SSSSEEEEEETT
T ss_pred ceEEECCCCCEEEE-EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEEC---CCCCEEEEEeCC
Confidence 99999999999984 3333 334445556677777 99999999999 899999999999
Q ss_pred CeEEEEecCCCcceecccccceeeeee------cc---------------CCceeEEEecCCCC----------CeEEEe
Q 025649 190 KLVKVWDCSRFQGVQTSINNDLLIKNI------NL---------------NKKVNWLCTTPTES----------ENLVVC 238 (250)
Q Consensus 190 ~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~~----------~~l~s~ 238 (250)
|.|++||++++ +.+..+. .| ...|.+++|+| ++ ++|+++
T Consensus 313 g~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~l~s~ 382 (397)
T 1sq9_A 313 GKLRFWDVKTK---------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK-KGWRSGMGADLNESLCCV 382 (397)
T ss_dssp SEEEEEETTTT---------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC-TTTSBSTTCTTSCEEEEE
T ss_pred CeEEEEEcCCC---------ceeEEEecccCcccchhhhhccccccccccCCceeEEEecc-ccccccccccccceEEEe
Confidence 99999999997 4445555 66 89999999998 66 799999
Q ss_pred eCCceEEEEeCC
Q 025649 239 DTSKVVKVYSIS 250 (250)
Q Consensus 239 ~~d~~i~vw~~~ 250 (250)
+.||.|++|+++
T Consensus 383 ~~dg~i~iw~~~ 394 (397)
T 1sq9_A 383 CLDRSIRWFREA 394 (397)
T ss_dssp ETTTEEEEEEEE
T ss_pred cCCCcEEEEEcC
Confidence 999999999973
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-34 Score=227.27 Aligned_cols=224 Identities=6% Similarity=-0.042 Sum_probs=166.8
Q ss_pred CcEEEEcccceee----eeeccCCCCCeeeEEEcCC------CCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649 1 MWQIIDIRQHCLY----KSLRAGHSSICSSVQFIPW------KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN 70 (250)
Q Consensus 1 ti~iwd~~~~~~~----~~l~~~h~~~v~~l~~~~~------~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 70 (250)
+|+|||+.+++.. ..+. +|.+.|.+++|+|+ +. +|++++.||+|++||+.+++......... ....
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~-~~~~~V~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~~~~~~~~~~~~~--~~p~ 259 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIV-HSFGEVWDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEIIDNATDVHVFKMC--EKPS 259 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEE-ECCCSEEEEEECSSCCCSSSSC-EEEEEETTSCEEEEECCCCSSSSSEEECC--CSCS
T ss_pred eEEEEEccCCCCCceEEEEEE-ecCCcEEEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcCCCccccccceee--cCce
Confidence 4899999887653 3466 78899999999997 45 89999999999999998765321000000 0000
Q ss_pred CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccce--eecccc-eeEEEeeee
Q 025649 71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ--STSKVN-IRDAEMEIL 147 (250)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~ 147 (250)
.....|...|.+++|+| + ..|++|+.||+|++||++++.........+...|.++ .++|++ .++++ ++.
T Consensus 260 ~~l~~h~~~v~sv~~s~------~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS-~S~ 331 (524)
T 2j04_B 260 LTLSLADSLITTFDFLS------P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST-VAV 331 (524)
T ss_dssp EEECCTTTCEEEEEESS------S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE-EET
T ss_pred EEEEcCCCCEEEEEecC------C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE-ecc
Confidence 11223678899999997 4 4899999999999999997644333223345788888 678888 77774 333
Q ss_pred e----eccCeeeeeeccccCccc--cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc
Q 025649 148 D----QSGGKRLHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 221 (250)
Q Consensus 148 ~----~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (250)
| .++....++...+.+|.. .|.+++|+ |+++.+++++.|++|++||++++ ..+..+.+|.+.
T Consensus 332 D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs---p~~~~l~s~~~d~tv~lwd~~~~---------~~~~~l~gH~~~ 399 (524)
T 2j04_B 332 DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC---PQIYSYIYSDGASSLRAVPSRAA---------FAVHPLVSRETT 399 (524)
T ss_dssp TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEE---TTTTEEEEECSSSEEEEEETTCT---------TCCEEEEECSSC
T ss_pred CCeEEEEECCCCCcccccccccccCcccceEeC---CCcCeEEEeCCCCcEEEEECccc---------ccceeeecCCCc
Confidence 3 233333344445555543 47899999 88999999999999999999997 444567789999
Q ss_pred eeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 222 VNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 222 v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
|++++|+| ++++|++|+.||+|++||+
T Consensus 400 V~sva~Sp-~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 400 ITAIGVSR-LHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp EEEEECCS-SCCBCEEEETTTEEECCBS
T ss_pred eEEEEeCC-CCCeEEEEECCCEEEEEec
Confidence 99999998 8999999999999999986
No 51
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.9e-33 Score=210.17 Aligned_cols=224 Identities=18% Similarity=0.181 Sum_probs=174.3
Q ss_pred CcEEEEcccce-----eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649 1 MWQIIDIRQHC-----LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 1 ti~iwd~~~~~-----~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
+|+|||+.+++ ....++ +|...|.+++|+|+++ +|++++.|+.|++|+............
T Consensus 62 ~i~vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~-~l~s~~~d~~i~~~~~~~~~~~~~~~~------------- 126 (340)
T 4aow_A 62 TIIMWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQ-FALSGSWDGTLRLWDLTTGTTTRRFVG------------- 126 (340)
T ss_dssp CEEEEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEEC-------------
T ss_pred eEEEEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCC-EEEEEcccccceEEeecccceeeeecC-------------
Confidence 68999987543 567788 9999999999999999 899999999999999988766555542
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccce--eEEEeeeee----e
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI--RDAEMEILD----Q 149 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~ 149 (250)
+...+....+++ ++++|++++.|+.+++||+............+...+..++|++++. +++ .+..+ .
T Consensus 127 ~~~~~~~~~~~~------~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-s~~~d~~i~i 199 (340)
T 4aow_A 127 HTKDVLSVAFSS------DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV-SCGWDKLVKV 199 (340)
T ss_dssp CSSCEEEEEECT------TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE-EEETTSCEEE
T ss_pred CCCceeEEEEee------cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE-EEcCCCEEEE
Confidence 356677888887 8999999999999999999887666555555667888899988754 333 33222 2
Q ss_pred ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccc----------------------
Q 025649 150 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI---------------------- 207 (250)
Q Consensus 150 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------- 207 (250)
++....+.+..+.+|.+.|++++|+ |++++|++|+.||.|++||+++........
T Consensus 200 ~d~~~~~~~~~~~~h~~~v~~~~~s---~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d 276 (340)
T 4aow_A 200 WNLANCKLKTNHIGHTGYLNTVTVS---PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATG 276 (340)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred EECCCCceeeEecCCCCcEEEEEEC---CCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCC
Confidence 2334445667788999999999999 899999999999999999998875442100
Q ss_pred ---------ccce---------eeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 208 ---------NNDL---------LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 208 ---------~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.... .....+|...|++++|+| ++++|++|+.||.|+|||++
T Consensus 277 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 277 PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEE
T ss_pred CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCC
Confidence 0000 112236788899999998 89999999999999999973
No 52
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-34 Score=226.21 Aligned_cols=225 Identities=11% Similarity=0.062 Sum_probs=164.1
Q ss_pred CcEEEEccccee-----------eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc-cceecCCCCCC
Q 025649 1 MWQIIDIRQHCL-----------YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN-KIVNFGLPENN 68 (250)
Q Consensus 1 ti~iwd~~~~~~-----------~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~ 68 (250)
+|+|||+.+++. ...+. +|...|++++|++++ .|++|+.||+|++||+++++.. ..+. +
T Consensus 236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~-~----- 306 (524)
T 2j04_B 236 TINFLEIIDNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQ-V----- 306 (524)
T ss_dssp CEEEEECCCCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEE-C-----
T ss_pred eEEEEEcCCCccccccceeecCceEEEE-cCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEee-c-----
Confidence 689999986642 23677 999999999999864 7999999999999999877433 3343 3
Q ss_pred CCCCcccCCCceeEE--ecCCCcccCCCC-CEEEEEeCCCeEEEEeCCCceeEeeccCCCC-CCccceeecccceeEEEe
Q 025649 69 GNAGQCYNPAFVHAI--AIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSKSTTK-PLKGSQSTSKVNIRDAEM 144 (250)
Q Consensus 69 ~~~~~~~~~~~v~~~--~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 144 (250)
|...|.++ .++| ++ ++|++++.|++|++||+++++....+..+.. ..+.+++|+|+++.+++.
T Consensus 307 -------H~~~V~sv~~~~s~------~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~ 373 (524)
T 2j04_B 307 -------HDSYILSVSTAYSD------FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYS 373 (524)
T ss_dssp -------SSSCEEEEEEECCT------TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEE
T ss_pred -------ccccEEEEEEEcCC------CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEe
Confidence 67889999 5676 77 8999999999999999998765544433322 347899999999888742
Q ss_pred e---eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee--------------c--
Q 025649 145 E---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ--------------T-- 205 (250)
Q Consensus 145 ~---~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------------~-- 205 (250)
+ ....++.....++..+.+|.+.|++++|+ |+|++|++|+.||+|++||+....... .
T Consensus 374 ~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S---p~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~ 450 (524)
T 2j04_B 374 DGASSLRAVPSRAAFAVHPLVSRETTITAIGVS---RLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWD 450 (524)
T ss_dssp CSSSEEEEEETTCTTCCEEEEECSSCEEEEECC---SSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECB
T ss_pred CCCCcEEEEECcccccceeeecCCCceEEEEeC---CCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEec
Confidence 1 12222233344455677899999999999 899999999999999999975321000 0
Q ss_pred -cc------------------ccceeeeeeccCCceeEEEecCCC--CCeEEEeeCCceEEEEeCC
Q 025649 206 -SI------------------NNDLLIKNINLNKKVNWLCTTPTE--SENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 206 -~~------------------~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~vw~~~ 250 (250)
.. ....+..+.+|...|++++|+|.. +..+++|+.||.|+||++.
T Consensus 451 ~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 451 YSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp CCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred cCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 00 123344566899999999999832 4589999999999999974
No 53
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.2e-32 Score=206.54 Aligned_cols=215 Identities=19% Similarity=0.251 Sum_probs=169.0
Q ss_pred ccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649 8 RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD 87 (250)
Q Consensus 8 ~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 87 (250)
++.++..+|+ ||.+.|++|+|+|++..+|+|||.|++|++||+.+.+........ ....|...|.+++|+|
T Consensus 26 ~~~~l~~tL~-GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~--------~l~~h~~~V~~~~~s~ 96 (340)
T 4aow_A 26 EQMTLRGTLK-GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR--------ALRGHSHFVSDVVISS 96 (340)
T ss_dssp CEEEEEEEEC-CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE--------EECCCSSCEEEEEECT
T ss_pred CceEEEEEEC-CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE--------EEeCCCCCEEEEEECC
Confidence 4556677899 999999999999985338999999999999999876543221100 1112678999999999
Q ss_pred CcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccC-eeeeeecccc
Q 025649 88 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGG-KRLHLDYSVG 162 (250)
Q Consensus 88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~ 162 (250)
++++|++++.|+.|++|+............. ...+....+++++..+++ +..|. ++. ..........
T Consensus 97 ------dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s-~s~d~~~~~~d~~~~~~~~~~~~ 168 (340)
T 4aow_A 97 ------DGQFALSGSWDGTLRLWDLTTGTTTRRFVGH-TKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLGVCKYTVQDE 168 (340)
T ss_dssp ------TSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTSSCEEE-EETTSCEEEECTTSCEEEEECSS
T ss_pred ------CCCEEEEEcccccceEEeecccceeeeecCC-CCceeEEEEeecCcccee-ecCCCeEEEEEeCCCceEEEEec
Confidence 9999999999999999999987766555444 366777889999998884 33222 221 2233345667
Q ss_pred CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCc
Q 025649 163 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK 242 (250)
Q Consensus 163 ~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 242 (250)
+|...+.+++|++. +...++++++.|+.|++||++++ +....+.+|...|++++|+| ++++|++|+.||
T Consensus 169 ~~~~~v~~~~~~~~-~~~~~~~s~~~d~~i~i~d~~~~---------~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg 237 (340)
T 4aow_A 169 SHSEWVSCVRFSPN-SSNPIIVSCGWDKLVKVWNLANC---------KLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDG 237 (340)
T ss_dssp SCSSCEEEEEECSC-SSSCEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTC
T ss_pred cccCcccceEEccC-CCCcEEEEEcCCCEEEEEECCCC---------ceeeEecCCCCcEEEEEECC-CCCEEEEEeCCC
Confidence 89999999999832 23468899999999999999997 66677889999999999998 899999999999
Q ss_pred eEEEEeCC
Q 025649 243 VVKVYSIS 250 (250)
Q Consensus 243 ~i~vw~~~ 250 (250)
.|++||++
T Consensus 238 ~i~iwd~~ 245 (340)
T 4aow_A 238 QAMLWDLN 245 (340)
T ss_dssp EEEEEETT
T ss_pred eEEEEEec
Confidence 99999974
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.9e-32 Score=205.61 Aligned_cols=210 Identities=14% Similarity=0.157 Sum_probs=175.6
Q ss_pred CcEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|++||+.+++ ....+. +|...|.+++|+|+++ +|++++.||.|++||+++++.+..+.. |..
T Consensus 120 ~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~-------------~~~ 184 (337)
T 1gxr_A 120 TLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQG-------------HTD 184 (337)
T ss_dssp EEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECC-------------CSS
T ss_pred cEEEEECCCCCcceeeecc-cCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeec-------------ccC
Confidence 47899999877 667788 8999999999999999 899999999999999999887777752 467
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKR 154 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 154 (250)
.+.+++|+| ++++|++++.|+.|++||+++++....... ...+.+++|+|+++++++ +..+. ++...
T Consensus 185 ~i~~~~~~~------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~-~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 185 GASCIDISN------DGTKLWTGGLDNTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTGEWLAV-GMESSNVEVLHVNK 255 (337)
T ss_dssp CEEEEEECT------TSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECTTSSEEEE-EETTSCEEEEETTS
T ss_pred ceEEEEECC------CCCEEEEEecCCcEEEEECCCCceEeeecC--CCceEEEEECCCCCEEEE-EcCCCcEEEEECCC
Confidence 899999999 999999999999999999999887766653 367899999999999984 32222 11111
Q ss_pred eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649 155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 234 (250)
.+ ...+..|...|.+++|+ |++++|++++.||.|++||+.++ +.+ ....|...+.+++|+| ++++
T Consensus 256 ~~-~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~~~~~~~~---------~~~-~~~~~~~~v~~~~~s~-~~~~ 320 (337)
T 1gxr_A 256 PD-KYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYG---------ASI-FQSKESSSVLSCDISV-DDKY 320 (337)
T ss_dssp SC-EEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTC---------CEE-EEEECSSCEEEEEECT-TSCE
T ss_pred CC-eEEEcCCccceeEEEEC---CCCCEEEEecCCCcEEEEECCCC---------eEE-EEecCCCcEEEEEECC-CCCE
Confidence 11 23567899999999999 89999999999999999999987 332 3456888999999998 8899
Q ss_pred EEEeeCCceEEEEeC
Q 025649 235 LVVCDTSKVVKVYSI 249 (250)
Q Consensus 235 l~s~~~d~~i~vw~~ 249 (250)
|++++.||.|++|++
T Consensus 321 l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 321 IVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEETTSCEEEEEE
T ss_pred EEEecCCCeEEEEEE
Confidence 999999999999996
No 55
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=210.10 Aligned_cols=226 Identities=13% Similarity=0.156 Sum_probs=174.1
Q ss_pred CcEEEEcccce-eeeeeccCCCCCeeeEE------EcCCCCeEEEEecCCCeEEEEEccCCC-CccceecCCCCCCCCCC
Q 025649 1 MWQIIDIRQHC-LYKSLRAGHSSICSSVQ------FIPWKPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAG 72 (250)
Q Consensus 1 ti~iwd~~~~~-~~~~l~~~h~~~v~~l~------~~~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~ 72 (250)
+|++||+.+++ .+..+. +|...|.+++ |+|+++ +|++++.||.|++||+++++ .+..+.....
T Consensus 91 ~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------- 161 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVK-GHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQG------- 161 (357)
T ss_dssp CEEEECTTSCSSCSEEEC-CCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTT-------
T ss_pred eEEEEeCCCCCccEEEEE-ecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCC-------
Confidence 58999999988 888999 9999999995 468888 89999999999999999886 5666642200
Q ss_pred cccCCCceeEEe----cCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc---cceeEEEee
Q 025649 73 QCYNPAFVHAIA----IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK---VNIRDAEME 145 (250)
Q Consensus 73 ~~~~~~~v~~~~----~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 145 (250)
.....+.+++ |+| +++++++++.|+.|++||+++++...... +...+.+++|+| ++.++++ +
T Consensus 162 --~~~~~v~~~~~~~~~~~------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~-~ 230 (357)
T 3i2n_A 162 --ENKRDCWTVAFGNAYNQ------EERVVCAGYDNGDIKLFDLRNMALRWETN--IKNGVCSLEFDRKDISMNKLVA-T 230 (357)
T ss_dssp --SCCCCEEEEEEECCCC-------CCCEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEESCSSSSCCEEEE-E
T ss_pred --CCCCceEEEEEEeccCC------CCCEEEEEccCCeEEEEECccCceeeecC--CCCceEEEEcCCCCCCCCEEEE-E
Confidence 0134678887 677 99999999999999999999988755433 347899999999 8888884 3
Q ss_pred eee----eccCeeeeeeccc-----cCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecc---------
Q 025649 146 ILD----QSGGKRLHLDYSV-----GGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTS--------- 206 (250)
Q Consensus 146 ~~~----~~~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~--------- 206 (250)
..+ .++....+....+ .+|...|.+++|+ |+++ +|++++.||.|++||++........
T Consensus 231 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~ 307 (357)
T 3i2n_A 231 SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL---PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV 307 (357)
T ss_dssp ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE---TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC---CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence 222 2222333333333 3899999999999 8888 8999999999999999875432110
Q ss_pred -cccceeeeeeccCCceeEEEecCCCCCeEE-EeeCCceEEEEeCC
Q 025649 207 -INNDLLIKNINLNKKVNWLCTTPTESENLV-VCDTSKVVKVYSIS 250 (250)
Q Consensus 207 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~vw~~~ 250 (250)
.....+..+.+|...|.+++|+| ++++|+ +++.||.|++||+.
T Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 308 AGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp CCEEEEEEEEECCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEEC
T ss_pred ccccceeeccccCCCCeeEEEEcC-CCCeEEEEecCCCcEEEEECC
Confidence 01135667788999999999998 788887 89999999999974
No 56
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.2e-32 Score=225.85 Aligned_cols=205 Identities=18% Similarity=0.277 Sum_probs=168.3
Q ss_pred eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc-----cceecCCCCCCCCCCcccCCCceeEEecC
Q 025649 12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN-----KIVNFGLPENNGNAGQCYNPAFVHAIAIP 86 (250)
Q Consensus 12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 86 (250)
....++ +|.+.|++++|+|++..+|+||+.|++|++||+.+.... ..+. + |...|.+++|+
T Consensus 374 ~~~~l~-~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~------------h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMR-AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-G------------HSHFVEDVVLS 439 (694)
T ss_dssp EEEEEE-CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-C------------CSSCEEEEEEC
T ss_pred hhhhcc-cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-C------------CCCcEEEEEEC
Confidence 445688 999999999999987558999999999999999764322 2222 2 78899999999
Q ss_pred CCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeeeccCeeeeeecc
Q 025649 87 DADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQSGGKRLHLDYS 160 (250)
Q Consensus 87 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 160 (250)
| ++++|++|+.|+.|++||+.++.....+..+ ...+.+++|+|+++++++. ..|+............
T Consensus 440 ~------~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 512 (694)
T 3dm0_A 440 S------DGQFALSGSWDGELRLWDLAAGVSTRRFVGH-TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG 512 (694)
T ss_dssp T------TSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred C------CCCEEEEEeCCCcEEEEECCCCcceeEEeCC-CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence 9 9999999999999999999998877766554 4789999999999999842 2333322222233334
Q ss_pred ccCccccEEEEEeecCCCCC--cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649 161 VGGHTAAASCVAFSMFGERG--KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 238 (250)
Q Consensus 161 ~~~h~~~v~~~~~~p~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 238 (250)
..+|...|.+++|+ |++ .++++|+.|+.|++||+++. .+...+.+|...|.+++|+| ++++|++|
T Consensus 513 ~~~h~~~v~~~~~~---~~~~~~~l~s~s~d~~v~vwd~~~~---------~~~~~~~~h~~~v~~v~~sp-dg~~l~sg 579 (694)
T 3dm0_A 513 GEGHRDWVSCVRFS---PNTLQPTIVSASWDKTVKVWNLSNC---------KLRSTLAGHTGYVSTVAVSP-DGSLCASG 579 (694)
T ss_dssp TTSCSSCEEEEEEC---SCSSSCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECT-TSSEEEEE
T ss_pred CCCCCCcEEEEEEe---CCCCcceEEEEeCCCeEEEEECCCC---------cEEEEEcCCCCCEEEEEEeC-CCCEEEEE
Confidence 46799999999999 665 68999999999999999987 56667889999999999998 89999999
Q ss_pred eCCceEEEEeCC
Q 025649 239 DTSKVVKVYSIS 250 (250)
Q Consensus 239 ~~d~~i~vw~~~ 250 (250)
+.||.|++||++
T Consensus 580 ~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 580 GKDGVVLLWDLA 591 (694)
T ss_dssp ETTSBCEEEETT
T ss_pred eCCCeEEEEECC
Confidence 999999999974
No 57
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.9e-33 Score=217.60 Aligned_cols=224 Identities=10% Similarity=0.092 Sum_probs=162.9
Q ss_pred CcEEEEcccceee--eeeccCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649 1 MWQIIDIRQHCLY--KSLRAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 1 ti~iwd~~~~~~~--~~l~~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
+|+|||+.+++.. ..+. +|.+.|++|+|+| ++. +|+||+.||+|++||++++.. ..+... ..+.
T Consensus 143 ~i~lWd~~~~~~~~~~~~~-gH~~~V~~l~f~p~~~~-~l~s~s~D~~v~iwd~~~~~~-~~~~~~----------~~~~ 209 (435)
T 4e54_B 143 DIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTN-QFYASSMEGTTRLQDFKGNIL-RVFASS----------DTIN 209 (435)
T ss_dssp CEEEECSSCCSCCEEECCC-SSSCCCCEEEECSSCTT-EEEEECSSSCEEEEETTSCEE-EEEECC----------SSCS
T ss_pred EEEEEECCCCCceeEEEcc-CCCCCEEEEEEeCCCCC-EEEEEeCCCEEEEeeccCCce-eEEecc----------CCCC
Confidence 5899999876543 4456 8999999999998 456 899999999999999976543 222211 0123
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee-------c
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ-------S 150 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 150 (250)
..+.+++|+| ++++|++|+.||.|++||++.. .+..+.. +...+.+++|+|++..++..+..|. .
T Consensus 210 ~~~~~~~~~~------~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~-h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~ 281 (435)
T 4e54_B 210 IWFCSLDVSA------SSRMVVTGDNVGNVILLNMDGK-ELWNLRM-HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281 (435)
T ss_dssp CCCCCEEEET------TTTEEEEECSSSBEEEEESSSC-BCCCSBC-CSSCEEEEEECTTCSSEEEEEETTSBCCEEETT
T ss_pred ccEEEEEECC------CCCEEEEEeCCCcEeeeccCcc-eeEEEec-ccceEEeeeecCCCceEEEEecCcceeeEEecc
Confidence 4578899998 9999999999999999999754 3333333 3578999999999886554444333 2
Q ss_pred cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec-------------------------
Q 025649 151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT------------------------- 205 (250)
Q Consensus 151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------------------------- 205 (250)
.......+....+|...|++++|+ |+|++|++++.||.|++||++++.....
T Consensus 282 ~~~~~~~~~~~~~h~~~v~~~~~s---pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (435)
T 4e54_B 282 QVRGKASFLYSLPHRHPVNAACFS---PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNL 358 (435)
T ss_dssp TCCSSSCCSBCCBCSSCEEECCBC---TTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSC
T ss_pred cccccceEEEeeeccccccceeEC---CCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCE
Confidence 223223334456799999999999 8999999999999999999987543210
Q ss_pred --------------------------ccccceeee-eeccCCceeEE-EecCCCCCeEEEeeCCceEEEEeCC
Q 025649 206 --------------------------SINNDLLIK-NINLNKKVNWL-CTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 206 --------------------------~~~~~~~~~-~~~~~~~v~~~-~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
....+.+.. ..+|...|.++ +|+| +|++|++|+ |+.|+|||++
T Consensus 359 ~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 359 IVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp EEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC
T ss_pred EEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECC
Confidence 001111222 23567778887 5787 899998876 8899999974
No 58
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.3e-32 Score=221.23 Aligned_cols=208 Identities=21% Similarity=0.265 Sum_probs=172.9
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||... +.+..+. +|...|.+++|+|+++ +|++++.||.|++||. +++.+..+. + |...|
T Consensus 326 ~i~~w~~~~-~~~~~~~-~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~-~~~~~~~~~-~------------~~~~v 388 (577)
T 2ymu_A 326 TVKLWNRNG-QHLQTLT-GHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLT-G------------HSSSV 388 (577)
T ss_dssp CEEEEETTS-CEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEET-TCCEEEEEE-C------------CSSCE
T ss_pred eEEEEeCCC-CeeEEEe-CCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcC-CCCEEEEec-C------------CCCCe
Confidence 589999864 4556788 9999999999999999 8999999999999996 466666665 2 56789
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLH 156 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 156 (250)
.+++|+| ++++|++++.|+.|++||.. ++....+.. +...+.+++|+|+++++++ +..|. ++. ..+
T Consensus 389 ~~~~~s~------dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~-~~~~v~~~~~s~d~~~l~~-~~~d~~v~~w~~-~~~ 458 (577)
T 2ymu_A 389 RGVAFSP------DGQTIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVWGVAFSPDDQTIAS-ASDDKTVKLWNR-NGQ 458 (577)
T ss_dssp EEEEECT------TSSCEEEEETTSEEEEECTT-CCEEEEEEC-CSSCEEEEEECTTSSEEEE-EETTSEEEEEET-TSC
T ss_pred EEEEECC------CCCEEEEEeCCCEEEEEeCC-CCEEEEecC-CCCCeEEEEECCCCCEEEE-EcCCCEEEEEEC-CCC
Confidence 9999999 99999999999999999965 444444443 3478999999999999984 32222 111 234
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
.+..+.+|...|.+++|+ |++++|++++.|+.|++||... +++..+.+|...|++++|+| ++++|+
T Consensus 459 ~~~~~~~~~~~v~~~~~s---pd~~~las~~~d~~i~iw~~~~----------~~~~~~~~h~~~v~~l~~s~-dg~~l~ 524 (577)
T 2ymu_A 459 LLQTLTGHSSSVRGVAFS---PDGQTIASASDDKTVKLWNRNG----------QLLQTLTGHSSSVRGVAFSP-DGQTIA 524 (577)
T ss_dssp EEEEEECCSSCEEEEEEC---TTSCEEEEEETTSEEEEEETTS----------CEEEEEECCSSCEEEEEECT-TSSCEE
T ss_pred EEEEEcCCCCCEEEEEEc---CCCCEEEEEeCCCEEEEEcCCC----------CEEEEEeCCCCCEEEEEEcC-CCCEEE
Confidence 556788999999999999 8999999999999999999643 56678889999999999998 899999
Q ss_pred EeeCCceEEEEeC
Q 025649 237 VCDTSKVVKVYSI 249 (250)
Q Consensus 237 s~~~d~~i~vw~~ 249 (250)
+++.||.|++||+
T Consensus 525 s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 525 SASDDKTVKLWNR 537 (577)
T ss_dssp EEETTSEEEEECT
T ss_pred EEECcCEEEEEeC
Confidence 9999999999985
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4e-33 Score=215.84 Aligned_cols=217 Identities=12% Similarity=0.062 Sum_probs=173.6
Q ss_pred CcEEEEcccce------eeeeeccCCCCCeeeEEEcCC----C---CeEEEEecCCCeEEEEEccCCCC-----ccceec
Q 025649 1 MWQIIDIRQHC------LYKSLRAGHSSICSSVQFIPW----K---PWEVISGGLDSKLVMWDFSKGRP-----NKIVNF 62 (250)
Q Consensus 1 ti~iwd~~~~~------~~~~l~~~h~~~v~~l~~~~~----~---~~~l~s~s~dg~v~iwd~~~~~~-----~~~~~~ 62 (250)
+|++||+.+++ .+..+. +|...|.+++|+|+ + . +|++++.||.|++||+.+++. +..+..
T Consensus 37 ~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 114 (397)
T 1sq9_A 37 YLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELC-LVATTSFSGDLLFYRITREDETKKVIFEKLDL 114 (397)
T ss_dssp EEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEE-EEEEEETTSCEEEEEEEECTTTCCEEEEEECC
T ss_pred EEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCcccc-EEEEEcCCCCEEEEEccCCcccccccceeecc
Confidence 48999999888 788888 99999999999999 8 8 899999999999999998876 555542
Q ss_pred CCCCCCCCCCcccC--CCceeEEecC----CCcccCCCCCE-EEEEeCCCeEEEEeCCC------ceeEe-----ecc--
Q 025649 63 GLPENNGNAGQCYN--PAFVHAIAIP----DADMLDKTNKI-CVVAKGDGVVDVINIES------ELNIS-----RSK-- 122 (250)
Q Consensus 63 ~~~~~~~~~~~~~~--~~~v~~~~~~----~~~~~~~~~~~-l~~~~~d~~i~~~d~~~------~~~~~-----~~~-- 122 (250)
.. .+ ...|.+++|+ | ++++ |++++.||.|++||+++ ++... .+.
T Consensus 115 ~~----------~~~~~~~v~~~~~~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 115 LD----------SDMKKHSFWALKWGASNDR------LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 178 (397)
T ss_dssp SC----------TTGGGSCEEEEEEECCC----------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred cc----------cccCCCcEEEEEEeeccCC------CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee
Confidence 20 00 3789999999 8 8999 99999999999999998 55443 332
Q ss_pred ----CCCCCCccceeecccceeEEEeee----eeeccCeeeeeeccccC---c---cccEEEEEeecCCCCCcEEEEeeC
Q 025649 123 ----STTKPLKGSQSTSKVNIRDAEMEI----LDQSGGKRLHLDYSVGG---H---TAAASCVAFSMFGERGKYLISGGN 188 (250)
Q Consensus 123 ----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---h---~~~v~~~~~~p~~~~~~~l~s~~~ 188 (250)
..+...+.+++|+|++ .+++ +. ...++....+.+..+.. | ...|.+++|+ |++++|++++.
T Consensus 179 ~~~~~~~~~~i~~~~~~~~~-~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~---~~~~~l~~~~~ 253 (397)
T 1sq9_A 179 VESPMTPSQFATSVDISERG-LIAT-GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS---PQGSLLAIAHD 253 (397)
T ss_dssp ECCSSSSCCCCCEEEECTTS-EEEE-ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC---SSTTEEEEEEE
T ss_pred eccccCCCCCceEEEECCCc-eEEE-EeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC---CCCCEEEEEec
Confidence 3345789999999999 7764 22 22223333445566777 8 9999999999 89999999999
Q ss_pred C---CeEEEEecCCCcceecccccceeeeeec-------------cCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 189 D---KLVKVWDCSRFQGVQTSINNDLLIKNIN-------------LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 189 d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
| +.|++||++++ +.+..+.. |...|.+++|+| ++++|++++.||.|++||++
T Consensus 254 d~~~g~i~i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 254 SNSFGCITLYETEFG---------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp ETTEEEEEEEETTTC---------CEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETT
T ss_pred CCCCceEEEEECCCC---------cccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcC
Confidence 9 99999999987 45555666 999999999998 88999999999999999974
No 60
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.5e-32 Score=211.13 Aligned_cols=218 Identities=14% Similarity=0.205 Sum_probs=171.5
Q ss_pred CcEEEEcccc-e---eeeeeccCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccCCC-------CccceecCCCCCC
Q 025649 1 MWQIIDIRQH-C---LYKSLRAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGR-------PNKIVNFGLPENN 68 (250)
Q Consensus 1 ti~iwd~~~~-~---~~~~l~~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~-------~~~~~~~~~~~~~ 68 (250)
+|+|||+.+. + .+..+. +|.+.|.+++|+| ++. +|++|+.||+|++||+.++. .+..+.
T Consensus 58 ~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~------- 128 (402)
T 2aq5_A 58 AFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDN-VIASGSEDCTVMVWEIPDGGLVLPLREPVITLE------- 128 (402)
T ss_dssp CEEEEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTT-EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-------
T ss_pred EEEEEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCC-EEEEEeCCCeEEEEEccCCCCccccCCceEEec-------
Confidence 4899998643 3 345677 9999999999999 777 99999999999999999873 344443
Q ss_pred CCCCcccCCCceeEEecCCCcccCCCC-CEEEEEeCCCeEEEEeCCCceeEeecc-CCCCCCccceeecccceeEEEee-
Q 025649 69 GNAGQCYNPAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSK-STTKPLKGSQSTSKVNIRDAEME- 145 (250)
Q Consensus 69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~- 145 (250)
.|...|.+++|+| ++ ++|++++.|+.|++||+++++....+. ..+...+.+++|+|++.++++.+
T Consensus 129 ------~h~~~v~~~~~~p------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 129 ------GHTKRVGIVAWHP------TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp ------CCSSCEEEEEECS------SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred ------CCCCeEEEEEECc------CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 2678999999999 76 799999999999999999998887774 44567899999999999998522
Q ss_pred --eeeeccCeeeeeeccc-cCcccc-EEEEEeecCCCCCcEEEEe---eCCCeEEEEecCCCcceecccccceeeeeecc
Q 025649 146 --ILDQSGGKRLHLDYSV-GGHTAA-ASCVAFSMFGERGKYLISG---GNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 218 (250)
Q Consensus 146 --~~~~~~~~~~~~~~~~-~~h~~~-v~~~~~~p~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 218 (250)
....++....+.+..+ .+|.+. +.++.|+ |++++|++| +.|+.|++||+++.... .......|
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-------~~~~~~~~ 266 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV---SEGKILTTGFSRMSERQVALWDTKHLEEP-------LSLQELDT 266 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC---STTEEEEEEECTTCCEEEEEEETTBCSSC-------SEEEECCC
T ss_pred CCcEEEEeCCCCceeeeeccCCCCCcceEEEEc---CCCcEEEEeccCCCCceEEEEcCccccCC-------ceEEeccC
Confidence 1222333334455566 677765 8999999 899999999 78999999999986421 22233467
Q ss_pred CCceeEEEecCCCCCeEE-EeeCCceEEEEeCC
Q 025649 219 NKKVNWLCTTPTESENLV-VCDTSKVVKVYSIS 250 (250)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~-s~~~d~~i~vw~~~ 250 (250)
...+..++|+| ++++|+ +|+.||.|++||++
T Consensus 267 ~~~v~~~~~s~-~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 267 SSGVLLPFFDP-DTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp CSSCEEEEEET-TTTEEEEEETTCSCEEEEEEC
T ss_pred CCceeEEEEcC-CCCEEEEEEcCCCeEEEEEec
Confidence 78899999998 777776 56679999999974
No 61
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.7e-32 Score=214.05 Aligned_cols=212 Identities=18% Similarity=0.235 Sum_probs=172.7
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+.+++.+..+. +|.+.|.+++|+|++ +|++|+.||+|++||+++++.+..+. + |...|
T Consensus 143 ~i~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~-~------------h~~~v 206 (464)
T 3v7d_B 143 MIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFE-G------------HNSTV 206 (464)
T ss_dssp CEEEEETTTTEEEEEEC-CCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEEEC-C------------CSSCE
T ss_pred cEEEEECCCCcEEEEEe-CCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEEEC-C------------CCCcc
Confidence 58999999999999999 999999999999987 79999999999999999998877776 3 57889
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEee----------------------ccCCCCCCccceeecccc
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR----------------------SKSTTKPLKGSQSTSKVN 138 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~ 138 (250)
.++++++ .++++++++++.|+.|++||++++..... ....+...+. .+++++
T Consensus 207 ~~l~~~~----~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~ 280 (464)
T 3v7d_B 207 RCLDIVE----YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHG 280 (464)
T ss_dssp EEEEEEE----SSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEE--EEEEET
T ss_pred EEEEEec----CCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEE--EEcCCC
Confidence 9999984 12789999999999999999997653321 1111122333 346778
Q ss_pred eeEEEeeeee----eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 025649 139 IRDAEMEILD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 214 (250)
Q Consensus 139 ~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 214 (250)
.++++ +..+ .++....+.+..+.+|...|.+++|+ |+++++++|+.||.|++||++++ +.+..
T Consensus 281 ~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~sg~~dg~i~vwd~~~~---------~~~~~ 347 (464)
T 3v7d_B 281 NIVVS-GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD---HERKRCISASMDTTIRIWDLENG---------ELMYT 347 (464)
T ss_dssp TEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTTTEEEEEETTSCEEEEETTTT---------EEEEE
T ss_pred CEEEE-EeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEc---CCCCEEEEEeCCCcEEEEECCCC---------cEEEE
Confidence 88874 3322 22334455667888999999999999 89999999999999999999997 66677
Q ss_pred eeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 215 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 215 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+.+|...|.+++++ +.+|++++.||.|++||++
T Consensus 348 ~~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 348 LQGHTALVGLLRLS---DKFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp ECCCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred EeCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECC
Confidence 88999999999986 4689999999999999974
No 62
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.7e-32 Score=209.66 Aligned_cols=214 Identities=16% Similarity=0.208 Sum_probs=172.2
Q ss_pred EEcccceeeeeeccCCCCCeeeEEEcCCC-CeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEE
Q 025649 5 IDIRQHCLYKSLRAGHSSICSSVQFIPWK-PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI 83 (250)
Q Consensus 5 wd~~~~~~~~~l~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 83 (250)
|++.+.+....+. +|...|.+++|+|++ + +|++|+.||.|++||+.+++....+... .|...|.++
T Consensus 58 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------~h~~~v~~~ 124 (383)
T 3ei3_B 58 RSLKSYKLHRTAS-PFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQGM-----------GPGDAITGM 124 (383)
T ss_dssp HHHTTCEEEEEEC-CCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEECCC-----------STTCBEEEE
T ss_pred ccccccceEEecc-CCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeeecC-----------CcCCceeEE
Confidence 3445677788888 999999999999999 6 9999999999999999988877666531 167899999
Q ss_pred ecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC--CCCCccceeecccceeEEE------eeeeeeccCeee
Q 025649 84 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST--TKPLKGSQSTSKVNIRDAE------MEILDQSGGKRL 155 (250)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 155 (250)
+|+| .++++|++++.|+.|++||+++.. ...+... ....+.+++|+|+++++++ +..|+. ..
T Consensus 125 ~~~~-----~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~----~~ 194 (383)
T 3ei3_B 125 KFNQ-----FNTNQLFVSSIRGATTLRDFSGSV-IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL----DG 194 (383)
T ss_dssp EEET-----TEEEEEEEEETTTEEEEEETTSCE-EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET----TS
T ss_pred EeCC-----CCCCEEEEEeCCCEEEEEECCCCc-eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC----CC
Confidence 9997 356899999999999999999643 3333222 2367999999999999984 223333 23
Q ss_pred eeeccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 234 (250)
+.+..+.+|...|.+++|+ |+++ +|++++.|+.|++||+++..... .++.. .+|...|.+++|+|.++++
T Consensus 195 ~~~~~~~~h~~~v~~~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~-~~~~~~v~~~~~s~~~~~~ 265 (383)
T 3ei3_B 195 HEIFKEKLHKAKVTHAEFN---PRCDWLMATSSVDATVKLWDLRNIKDKN-----SYIAE-MPHEKPVNAAYFNPTDSTK 265 (383)
T ss_dssp CEEEEEECSSSCEEEEEEC---SSCTTEEEEEETTSEEEEEEGGGCCSTT-----CEEEE-EECSSCEEEEEECTTTSCE
T ss_pred CEEEEeccCCCcEEEEEEC---CCCCCEEEEEeCCCEEEEEeCCCCCccc-----ceEEE-ecCCCceEEEEEcCCCCCE
Confidence 4566788899999999999 7888 99999999999999999843210 33333 3799999999999768889
Q ss_pred EEEeeCCceEEEEeCC
Q 025649 235 LVVCDTSKVVKVYSIS 250 (250)
Q Consensus 235 l~s~~~d~~i~vw~~~ 250 (250)
|++++.|+.|++||++
T Consensus 266 l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 266 LLTTDQRNEIRVYSSY 281 (383)
T ss_dssp EEEEESSSEEEEEETT
T ss_pred EEEEcCCCcEEEEECC
Confidence 9999999999999974
No 63
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-32 Score=208.71 Aligned_cols=211 Identities=11% Similarity=0.136 Sum_probs=165.4
Q ss_pred ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc--CCCCccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649 10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS--KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD 87 (250)
Q Consensus 10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 87 (250)
|+++..+. +|.+.|++++|+|+++ +|++|+.||.|++||+. +++.+..+. + |...|.+++|+|
T Consensus 1 G~~~~~~~-~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~------------h~~~v~~~~~~~ 65 (379)
T 3jrp_A 1 GSMVVIAN-AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLT-G------------HEGPVWRVDWAH 65 (379)
T ss_dssp ----CCEE-ECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEEC-C------------CSSCEEEEEECC
T ss_pred CCccEEec-CCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeEec-C------------CCCcEEEEEeCC
Confidence 45677888 9999999999999999 89999999999999998 444444554 2 578899999987
Q ss_pred CcccCCCCCEEEEEeCCCeEEEEeCCCce--eEeeccCCCCCCccceeeccc--ceeEEE------eeeeeeccCeeeee
Q 025649 88 ADMLDKTNKICVVAKGDGVVDVINIESEL--NISRSKSTTKPLKGSQSTSKV--NIRDAE------MEILDQSGGKRLHL 157 (250)
Q Consensus 88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~ 157 (250)
+.++++|++++.||.|++||+++++ ..... ..+...+.+++|+|+ +.++++ +..|+...... ..
T Consensus 66 ----~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~ 139 (379)
T 3jrp_A 66 ----PKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-TS 139 (379)
T ss_dssp ----GGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-CC
T ss_pred ----CCCCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-ee
Confidence 1128999999999999999999886 33333 334578999999999 888874 22333333211 22
Q ss_pred eccccCccccEEEEEeecCCC-------------CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeE
Q 025649 158 DYSVGGHTAAASCVAFSMFGE-------------RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 224 (250)
Q Consensus 158 ~~~~~~h~~~v~~~~~~p~~~-------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 224 (250)
...+.+|...|.+++|+ | +++++++++.||.|++||+++..... .+...+.+|...|.+
T Consensus 140 ~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~h~~~v~~ 211 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWA---PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----VLESTLEGHSDWVRD 211 (379)
T ss_dssp EEEEECCTTCEEEEEEC---CCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-----EEEEEECCCSSCEEE
T ss_pred eEEecCCCCceEEEEEc---CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-----eeEEEEecccCcEeE
Confidence 33566899999999999 6 68999999999999999998764321 344567789999999
Q ss_pred EEecCCC---CCeEEEeeCCceEEEEeCC
Q 025649 225 LCTTPTE---SENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 225 ~~~~~~~---~~~l~s~~~d~~i~vw~~~ 250 (250)
++|+| + +.+|++++.||.|++||++
T Consensus 212 ~~~sp-~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 212 VAWSP-TVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp EEECC-CCSSSEEEEEEETTSCEEEEEES
T ss_pred EEECC-CCCCCCeEEEEeCCCEEEEEeCC
Confidence 99998 6 8899999999999999964
No 64
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-32 Score=211.72 Aligned_cols=235 Identities=13% Similarity=0.052 Sum_probs=182.3
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCC-------------
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN------------- 67 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~------------- 67 (250)
+|++|| .+++.+..+. +|...|.+++|+|+++ +|++++.||.|++||+.+++.+..+.......
T Consensus 131 ~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (425)
T 1r5m_A 131 ELRLWN-KTGALLNVLN-FHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207 (425)
T ss_dssp CEEEEE-TTSCEEEEEC-CCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC---------------CC
T ss_pred eEEEEe-CCCCeeeecc-CCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcc
Confidence 489999 6788889999 9999999999999999 89999999999999999887666554332110
Q ss_pred ------------------------------CCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee
Q 025649 68 ------------------------------NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 117 (250)
Q Consensus 68 ------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 117 (250)
........|...|.+++|+| ++++|++++.|+.|++||+++++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~~d~~i~i~d~~~~~~ 281 (425)
T 1r5m_A 208 LGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND------TNKLLLSASDDGTLRIWHGGNGNS 281 (425)
T ss_dssp CBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET------TTTEEEEEETTSCEEEECSSSBSC
T ss_pred eeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC------CCCEEEEEcCCCEEEEEECCCCcc
Confidence 00011224677899999998 999999999999999999998877
Q ss_pred EeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEE
Q 025649 118 ISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV 194 (250)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~i 194 (250)
...+..+ ...+.++.|+|++ .+++.+ ....++....+.+..+..|...|.+++|+ |++++|++++.||.|++
T Consensus 282 ~~~~~~~-~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg~i~i 356 (425)
T 1r5m_A 282 QNCFYGH-SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS---QDGQKYAVAFMDGQVNV 356 (425)
T ss_dssp SEEECCC-SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC---TTSSEEEEEETTSCEEE
T ss_pred ceEecCC-CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc---CCCCEEEEEECCCeEEE
Confidence 6666443 4789999999999 665321 12222333445566777899999999999 89999999999999999
Q ss_pred EecCCCcceec-----------ccccceeeeeeccCC--ceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 195 WDCSRFQGVQT-----------SINNDLLIKNINLNK--KVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 195 wd~~~~~~~~~-----------~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
||++++..... ....+++..+..|.. .|.+++|+| ++++|++++.||.|++|+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 357 YDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEECC
T ss_pred EECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEeec
Confidence 99987631100 000125677788876 999999998 88899999999999999985
No 65
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-31 Score=207.20 Aligned_cols=214 Identities=12% Similarity=0.136 Sum_probs=173.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+|++||+.+++.+..+. +|...|.+++|+ +. +|++|+.||.|++||++.. ..+..+. + |...
T Consensus 157 ~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-~------------~~~~ 219 (401)
T 4aez_A 157 LVDIYDVESQTKLRTMA-GHQARVGCLSWN--RH-VLSSGSRSGAIHHHDVRIANHQIGTLQ-G------------HSSE 219 (401)
T ss_dssp CEEEEETTTCCEEEEEC-CCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEE-C------------CSSC
T ss_pred eEEEEECcCCeEEEEec-CCCCceEEEEEC--CC-EEEEEcCCCCEEEEecccCcceeeEEc-C------------CCCC
Confidence 48999999999999999 999999999995 45 8999999999999999854 4444444 3 5789
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee------eeeccCe
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI------LDQSGGK 153 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 153 (250)
|.+++|+| ++++|++++.|+.|++||+++++.......+ ...+.+++|+|++..++..+. ...++..
T Consensus 220 v~~~~~~~------~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 220 VCGLAWRS------DGLQLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp EEEEEECT------TSSEEEEEETTSCEEEEETTCSSEEEEECCC-SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred eeEEEEcC------CCCEEEEEeCCCeEEEccCCCCCccEEecCC-cceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence 99999999 9999999999999999999998777665543 478999999998876664432 2222333
Q ss_pred eeeeeccccCccccEEEEEeecCCCCCcEEEE--eeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649 154 RLHLDYSVGGHTAAASCVAFSMFGERGKYLIS--GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 231 (250)
Q Consensus 154 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 231 (250)
..+.+..+. +...|.+++|+ |+++++++ |+.||.|++||+.++.. .....+.+|...|.+++|+| +
T Consensus 293 ~~~~~~~~~-~~~~v~~~~~s---~~~~~l~~~~g~~dg~i~v~~~~~~~~-------~~~~~~~~h~~~v~~~~~s~-d 360 (401)
T 4aez_A 293 TGARVNTVD-AGSQVTSLIWS---PHSKEIMSTHGFPDNNLSIWSYSSSGL-------TKQVDIPAHDTRVLYSALSP-D 360 (401)
T ss_dssp TCCEEEEEE-CSSCEEEEEEC---SSSSEEEEEECTTTCEEEEEEEETTEE-------EEEEEEECCSSCCCEEEECT-T
T ss_pred CCCEEEEEe-CCCcEEEEEEC---CCCCeEEEEeecCCCcEEEEecCCccc-------eeEEEecCCCCCEEEEEECC-C
Confidence 344445554 56789999999 89999998 55899999999998632 22334678999999999998 8
Q ss_pred CCeEEEeeCCceEEEEeCC
Q 025649 232 SENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 232 ~~~l~s~~~d~~i~vw~~~ 250 (250)
+++|++++.||.|++|++.
T Consensus 361 g~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 361 GRILSTAASDENLKFWRVY 379 (401)
T ss_dssp SSEEEEECTTSEEEEEECC
T ss_pred CCEEEEEeCCCcEEEEECC
Confidence 9999999999999999974
No 66
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.6e-31 Score=208.42 Aligned_cols=218 Identities=10% Similarity=0.073 Sum_probs=170.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+.+++....+. .| ..+....|+|+++ +|++|+.||.|++||+.+++....+. + |...|
T Consensus 79 ~v~i~d~~~~~~~~~~~-~~-~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~------------h~~~v 142 (420)
T 3vl1_A 79 HDFLFNTIIRDGSKMLK-RA-DYTAVDTAKLQMR-RFILGTTEGDIKVLDSNFNLQREIDQ-A------------HVSEI 142 (420)
T ss_dssp EEEEEECCSEETTTTSC-SC-CEEEEEEECSSSC-EEEEEETTSCEEEECTTSCEEEEETT-S------------SSSCE
T ss_pred cEEEEEecccceeeEEe-cC-CceEEEEEecCCC-EEEEEECCCCEEEEeCCCcceeeecc-c------------ccCcc
Confidence 47899999998888887 66 4555667899999 89999999999999999887766554 2 67899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKR 154 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 154 (250)
.+++|+| ++++|++++.|+.|++||+++++....+.. +...+.+++|+|+++++++ +..|+......
T Consensus 143 ~~~~~~~------~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 143 TKLKFFP------SGEALISSSQDMQLKIWSVKDGSNPRTLIG-HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215 (420)
T ss_dssp EEEEECT------TSSEEEEEETTSEEEEEETTTCCCCEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEECC------CCCEEEEEeCCCeEEEEeCCCCcCceEEcC-CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence 9999999 999999999999999999999887766654 3578999999999999984 22344333333
Q ss_pred eeeeccccCccccEEEEEeec------------------CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee
Q 025649 155 LHLDYSVGGHTAAASCVAFSM------------------FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 216 (250)
Q Consensus 155 ~~~~~~~~~h~~~v~~~~~~p------------------~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 216 (250)
...+.....|...+.+++|.| ++|++++|++|+.||.|++||++++. .......
T Consensus 216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~ 287 (420)
T 3vl1_A 216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE--------QTIQLPS 287 (420)
T ss_dssp EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC--------EEEEECC
T ss_pred eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc--------eeEEccc
Confidence 332222234555666665532 23789999999999999999999873 2223335
Q ss_pred ccCCceeEEEecCCCCC-eEEEeeCCceEEEEeCC
Q 025649 217 NLNKKVNWLCTTPTESE-NLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 217 ~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~vw~~~ 250 (250)
.|...|.+++|+| ++. +|++|+.||.|++||++
T Consensus 288 ~~~~~v~~~~~~~-~~~~~l~~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 288 KFTCSCNSLTVDG-NNANYIYAGYENGMLAQWDLR 321 (420)
T ss_dssp TTSSCEEEEEECS-SCTTEEEEEETTSEEEEEETT
T ss_pred ccCCCceeEEEeC-CCCCEEEEEeCCCeEEEEEcC
Confidence 6888999999998 666 99999999999999974
No 67
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-31 Score=203.19 Aligned_cols=203 Identities=16% Similarity=0.171 Sum_probs=169.1
Q ss_pred eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649 13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD 92 (250)
Q Consensus 13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 92 (250)
...+. +|.+.|++++|+|+++ +|++|+.||.|++||+.+++.+..+. + |...|.+++|+|
T Consensus 25 ~~~l~-~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~-~------------h~~~v~~~~~~~----- 84 (369)
T 3zwl_B 25 AIKLT-GHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGTLD-G------------HTGTIWSIDVDC----- 84 (369)
T ss_dssp EEEEE-CCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEEEC-C------------CSSCEEEEEECT-----
T ss_pred cEEEE-EeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhhhh-h------------cCCcEEEEEEcC-----
Confidence 35577 9999999999999999 89999999999999999998887776 2 578899999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee--------eeeeccCee----------
Q 025649 93 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME--------ILDQSGGKR---------- 154 (250)
Q Consensus 93 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~---------- 154 (250)
++++|++++.||.|++||+++++...... ....+.+++|+|++++++... ....++...
T Consensus 85 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 85 -FTKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp -TSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred -CCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 99999999999999999999988887776 347899999999999998422 111121111
Q ss_pred -eeeeccccCccc--cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649 155 -LHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 231 (250)
Q Consensus 155 -~~~~~~~~~h~~--~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 231 (250)
......+..|.. .+.+++|+ |++++|++++.||.|++||+++.. ..+..+..|...|.+++|+| +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~v~~~~~~~-~ 229 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWS---TKGKYIIAGHKDGKISKYDVSNNY--------EYVDSIDLHEKSISDMQFSP-D 229 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEEC---GGGCEEEEEETTSEEEEEETTTTT--------EEEEEEECCSSCEEEEEECT-T
T ss_pred ccceeeeccCCcCccceeEEEEc---CCCCEEEEEcCCCEEEEEECCCCc--------EeEEEEecCCCceeEEEECC-C
Confidence 112334445555 89999999 899999999999999999999831 56667788999999999998 8
Q ss_pred CCeEEEeeCCceEEEEeCC
Q 025649 232 SENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 232 ~~~l~s~~~d~~i~vw~~~ 250 (250)
+++|++++.|+.|++||++
T Consensus 230 ~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 230 LTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp SSEEEEEETTSEEEEEETT
T ss_pred CCEEEEecCCceEEEEECC
Confidence 9999999999999999974
No 68
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.1e-32 Score=227.22 Aligned_cols=215 Identities=14% Similarity=0.209 Sum_probs=179.5
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|+|||+.+++.+..+. +|..+|.+++|+|+++ +|++|+.||.|++||+.+++.+..+. + |...|
T Consensus 36 ~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~-~------------~~~~v 100 (814)
T 3mkq_A 36 RVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEKVVDFE-A------------HPDYI 100 (814)
T ss_dssp EEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCCEEEEEE-C------------CSSCE
T ss_pred EEEEEECCCCceEEEEe-cCCCcEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEe-c------------CCCCE
Confidence 48999999999999999 9999999999999999 89999999999999999998887776 2 57889
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc-cceeEEEeeeee----eccCeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEILD----QSGGKRL 155 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~ 155 (250)
.+++|+| ++++|++++.||.|++||++++.........+...+.+++|+| ++..+++ +..+ .++....
T Consensus 101 ~~~~~s~------~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~v~vwd~~~~ 173 (814)
T 3mkq_A 101 RSIAVHP------TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS-GCLDRTVKVWSLGQS 173 (814)
T ss_dssp EEEEECS------SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE-EETTSEEEEEETTCS
T ss_pred EEEEEeC------CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE-EeCCCeEEEEECCCC
Confidence 9999999 9999999999999999999987444443444457899999999 7888874 3222 2222222
Q ss_pred eeeccccC-ccccEEEEEeecCCC--CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649 156 HLDYSVGG-HTAAASCVAFSMFGE--RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 156 ~~~~~~~~-h~~~v~~~~~~p~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
.....+.. +...+.+++|+ | +++++++++.||.|++||++++ ..+..+.+|...|.+++|+| ++
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~---~~~~~~~l~~~~~dg~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~~~-~~ 240 (814)
T 3mkq_A 174 TPNFTLTTGQERGVNYVDYY---PLPDKPYMITASDDLTIKIWDYQTK---------SCVATLEGHMSNVSFAVFHP-TL 240 (814)
T ss_dssp SCSEEEECCCTTCCCEEEEC---CSTTCCEEEEECTTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECS-SS
T ss_pred cceeEEecCCCCCEEEEEEE---ECCCCCEEEEEeCCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcC-CC
Confidence 23334443 44789999999 6 8999999999999999999987 56667788999999999998 88
Q ss_pred CeEEEeeCCceEEEEeCC
Q 025649 233 ENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 233 ~~l~s~~~d~~i~vw~~~ 250 (250)
++|++++.||.|++||+.
T Consensus 241 ~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 241 PIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp SEEEEEETTSCEEEEETT
T ss_pred CEEEEEeCCCeEEEEECC
Confidence 899999999999999973
No 69
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.1e-31 Score=210.05 Aligned_cols=233 Identities=15% Similarity=0.108 Sum_probs=175.9
Q ss_pred CcEEEEccc----------ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649 1 MWQIIDIRQ----------HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN 70 (250)
Q Consensus 1 ti~iwd~~~----------~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 70 (250)
+|++||+.+ .+.+..+. +|...|.+++|+|+++.+|++|+.||.|++||+.++......... .
T Consensus 152 ~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~ 224 (430)
T 2xyi_A 152 DVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA------K 224 (430)
T ss_dssp CEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEEC------S
T ss_pred cEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceecc------c
Confidence 489999987 67788889 999999999999998768999999999999999875432111000 0
Q ss_pred CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce---eEeeccCCCCCCccceeecccceeEEEeeee
Q 025649 71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL---NISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 147 (250)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (250)
.....|...|.+++|+| .++.+|++++.|+.|++||++++. ...... .+...+.+++|+|++..++.++..
T Consensus 225 ~~~~~h~~~v~~v~~~p-----~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~ 298 (430)
T 2xyi_A 225 NIFTGHTAVVEDVAWHL-----LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSA 298 (430)
T ss_dssp EEECCCSSCEEEEEECS-----SCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCEEEEEECSSCTTEEEEEET
T ss_pred eeecCCCCCEeeeEEeC-----CCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCCeEEEEeCCCCCCEEEEEeC
Confidence 01112678899999998 467899999999999999999863 333333 445789999999999854433332
Q ss_pred ee----ccCee-eeeeccccCccccEEEEEeecCCCCC-cEEEEeeCCCeEEEEecCCCccee-----cccccceeeeee
Q 025649 148 DQ----SGGKR-LHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQ-----TSINNDLLIKNI 216 (250)
Q Consensus 148 ~~----~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~ 216 (250)
+. ++... ..++..+.+|...|.+++|+ |++ .+|++++.|+.|++||+....... ....+.++....
T Consensus 299 dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~s---p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (430)
T 2xyi_A 299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWS---PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 375 (430)
T ss_dssp TSEEEEEETTCTTSCSEEEECCSSCEEEEEEC---SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC
T ss_pred CCeEEEEeCCCCCCCeEEeecCCCCEEEEEEC---CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC
Confidence 22 22222 34566778899999999999 777 579999999999999998743221 111125666778
Q ss_pred ccCCceeEEEecCCCCC-eEEEeeCCceEEEEeCC
Q 025649 217 NLNKKVNWLCTTPTESE-NLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 217 ~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~vw~~~ 250 (250)
+|...|.+++|+| ++. +|++++.||.|++|+++
T Consensus 376 ~h~~~v~~~~~~p-~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 376 GHTAKISDFSWNP-NEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCCceEEEECC-CCCCEEEEEECCCCEEEeEcc
Confidence 8999999999998 666 89999999999999974
No 70
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.2e-33 Score=212.55 Aligned_cols=205 Identities=9% Similarity=-0.029 Sum_probs=155.7
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC--CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 96 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (250)
.+.++|++++|+|+++ +|++|+.|+.|++||+.++ +.+..+. + |...|.+++|+| +++
T Consensus 9 ~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~------------h~~~v~~~~~s~------~~~ 68 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHARTFS-D------------HDKIVTCVDWAP------KSN 68 (377)
T ss_dssp ECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCCBC-C------------CSSCEEEEEECT------TTC
T ss_pred cCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEEEe-c------------CCceEEEEEEeC------CCC
Confidence 5678999999999999 8999999999999999987 5555554 2 578899999999 999
Q ss_pred EEEEEeCCCeEEEEeCCCce---eEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeee---eeeccccC-cc
Q 025649 97 ICVVAKGDGVVDVINIESEL---NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRL---HLDYSVGG-HT 165 (250)
Q Consensus 97 ~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~-h~ 165 (250)
+|++++.|+.|++||+.++. ...... .+...+.+++|+|+++++++ +..+. ++.... .....+.+ |.
T Consensus 69 ~l~s~s~d~~v~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~h~ 146 (377)
T 3dwl_C 69 RIVTCSQDRNAYVYEKRPDGTWKQTLVLL-RLNRAATFVRWSPNEDKFAV-GSGARVISVCYFEQENDWWVSKHLKRPLR 146 (377)
T ss_dssp CEEEEETTSSEEEC------CCCCEEECC-CCSSCEEEEECCTTSSCCEE-EESSSCEEECCC-----CCCCEEECSSCC
T ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEec-ccCCceEEEEECCCCCEEEE-EecCCeEEEEEECCcccceeeeEeecccC
Confidence 99999999999999999876 333333 34578999999999999984 33222 222222 24566677 99
Q ss_pred ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec---------ccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT---------SINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
..|.+++|+ |++++|++++.|+.|++||++....... .....++..+ +|...|.+++|+| ++++|+
T Consensus 147 ~~v~~~~~~---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~ 221 (377)
T 3dwl_C 147 STILSLDWH---PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALA 221 (377)
T ss_dssp SCEEEEEEC---TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEE
T ss_pred CCeEEEEEc---CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEE
Confidence 999999999 8999999999999999999974321110 0011344445 8999999999998 899999
Q ss_pred EeeCCceEEEEeCC
Q 025649 237 VCDTSKVVKVYSIS 250 (250)
Q Consensus 237 s~~~d~~i~vw~~~ 250 (250)
+++.||.|++||++
T Consensus 222 ~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 222 YAGHDSSVTIAYPS 235 (377)
T ss_dssp EEETTTEEC-CEEC
T ss_pred EEeCCCcEEEEECC
Confidence 99999999999974
No 71
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.6e-31 Score=204.99 Aligned_cols=224 Identities=8% Similarity=0.004 Sum_probs=172.0
Q ss_pred CcEEEEcccceeeeee--ccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC---ccceecCCCCCCCCCCccc
Q 025649 1 MWQIIDIRQHCLYKSL--RAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP---NKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l--~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~ 75 (250)
+|++||+++++....+ . .|...|.+++|+|+++ +|++++.||.|++||++.++. ...+..+
T Consensus 75 ~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~------------ 140 (372)
T 1k8k_C 75 NAYVWTLKGRTWKPTLVIL-RINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKP------------ 140 (372)
T ss_dssp CEEEEEEETTEEEEEEECC-CCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTT------------
T ss_pred eEEEEECCCCeeeeeEEee-cCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecc------------
Confidence 5899999988755443 5 7999999999999999 899999999999999988764 2233222
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCC------------------CceeEeeccCCCCCCccceeeccc
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE------------------SELNISRSKSTTKPLKGSQSTSKV 137 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 137 (250)
|...|.+++|+| ++++|++++.|+.|++||++ .++....+. .+...+.+++|+|+
T Consensus 141 ~~~~i~~~~~~~------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 141 IRSTVLSLDWHP------NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSAN 213 (372)
T ss_dssp CCSCEEEEEECT------TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSS
T ss_pred cCCCeeEEEEcC------CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCC
Confidence 577899999999 99999999999999999964 445555444 33578999999999
Q ss_pred ceeEEEee---eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC--Ccce--ecc----
Q 025649 138 NIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR--FQGV--QTS---- 206 (250)
Q Consensus 138 ~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~--~~~~--~~~---- 206 (250)
+.++++.+ ....++....+.+..+..|...|.+++|+ |+++++++| .|+.|++||+.. +... ...
T Consensus 214 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~ 289 (372)
T 1k8k_C 214 GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI---TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPK 289 (372)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEE---ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-
T ss_pred CCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEe---cCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccc
Confidence 99888422 12223333445666788899999999999 889988888 899999999988 4210 000
Q ss_pred -----------------cccce-------eeeeeccCCceeEEEecCCCC---CeEEEeeCCceEEEEeC
Q 025649 207 -----------------INNDL-------LIKNINLNKKVNWLCTTPTES---ENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 207 -----------------~~~~~-------~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~d~~i~vw~~ 249 (250)
..... .....+|...|++++|++.++ .+|++|+.||.|++||+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 290 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp -------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred cchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 00011 112248999999999887787 89999999999999996
No 72
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.1e-31 Score=199.52 Aligned_cols=214 Identities=14% Similarity=0.151 Sum_probs=170.4
Q ss_pred CcEEEEcccceeeeeecc----CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC--ccceecCCCCCCCCCCcc
Q 025649 1 MWQIIDIRQHCLYKSLRA----GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQC 74 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~----~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~ 74 (250)
+|++||+.+++....+.. +|...|.+++|+|+++ +|++++.||.|++||+++++. ...+. .
T Consensus 73 ~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~----------- 139 (337)
T 1gxr_A 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELT-S----------- 139 (337)
T ss_dssp EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEE-C-----------
T ss_pred eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecc-c-----------
Confidence 479999987764333321 6889999999999999 899999999999999988763 33333 2
Q ss_pred cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeecc
Q 025649 75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSG 151 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 151 (250)
+...+.+++|+| +++++++++.|+.|++||+++++....+..+ ...+.+++|+|+++++++.+ ....++
T Consensus 140 -~~~~i~~~~~~~------~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~~~d 211 (337)
T 1gxr_A 140 -SAPACYALAISP------DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH-TDGASCIDISNDGTKLWTGGLDNTVRSWD 211 (337)
T ss_dssp -SSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred -CCCceEEEEECC------CCCEEEEEeCCCcEEEEeCCCCceeeeeecc-cCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence 467899999999 9999999999999999999998877766553 47899999999999988422 112222
Q ss_pred CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649 152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 231 (250)
Q Consensus 152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 231 (250)
....+.+..+ .+...+.+++|+ |+++++++++.|+.|++||+++. +. .....|...|.+++|+| +
T Consensus 212 ~~~~~~~~~~-~~~~~v~~~~~s---~~~~~l~~~~~~~~i~~~~~~~~---------~~-~~~~~~~~~v~~~~~~~-~ 276 (337)
T 1gxr_A 212 LREGRQLQQH-DFTSQIFSLGYC---PTGEWLAVGMESSNVEVLHVNKP---------DK-YQLHLHESCVLSLKFAY-C 276 (337)
T ss_dssp TTTTEEEEEE-ECSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTSS---------CE-EEECCCSSCEEEEEECT-T
T ss_pred CCCCceEeee-cCCCceEEEEEC---CCCCEEEEEcCCCcEEEEECCCC---------Ce-EEEcCCccceeEEEECC-C
Confidence 2222333333 367789999999 89999999999999999999986 22 35678999999999998 8
Q ss_pred CCeEEEeeCCceEEEEeCC
Q 025649 232 SENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 232 ~~~l~s~~~d~~i~vw~~~ 250 (250)
+++|++++.||.|++||++
T Consensus 277 ~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 277 GKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp SSEEEEEETTSEEEEEETT
T ss_pred CCEEEEecCCCcEEEEECC
Confidence 8999999999999999974
No 73
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.9e-31 Score=205.13 Aligned_cols=227 Identities=13% Similarity=0.116 Sum_probs=176.8
Q ss_pred CcEEEEcccceeeeeec------------cCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCC
Q 025649 1 MWQIIDIRQHCLYKSLR------------AGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN 67 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~------------~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~ 67 (250)
+|++||+.+++....+. .+|...|.+++|+| ++. +|++++.||.|++||+.+++....+.
T Consensus 67 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~------ 139 (408)
T 4a11_B 67 VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG-MFTSSSFDKTLKVWDTNTLQTADVFN------ 139 (408)
T ss_dssp CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT-CEEEEETTSEEEEEETTTTEEEEEEE------
T ss_pred eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc-EEEEEeCCCeEEEeeCCCCccceecc------
Confidence 58999999887665543 15999999999999 555 89999999999999999988877776
Q ss_pred CCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-
Q 025649 68 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI- 146 (250)
Q Consensus 68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 146 (250)
+...+.++.++|.. +++.++++++.|+.|++||+++++....+..+ ...+.+++|+|++..++.++.
T Consensus 140 --------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~ll~~~~~ 207 (408)
T 4a11_B 140 --------FEETVYSHHMSPVS---TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH-RQEILAVSWSPRYDYILATASA 207 (408)
T ss_dssp --------CSSCEEEEEECSSC---SSCCEEEEEESSSSEEEEESSSSCCCEEECCC-CSCEEEEEECSSCTTEEEEEET
T ss_pred --------CCCceeeeEeecCC---CCCcEEEEEcCCCeEEEEeCCCcceeeeecCC-CCcEEEEEECCCCCcEEEEEcC
Confidence 35678888888721 25569999999999999999988777666543 478999999999986332333
Q ss_pred ------eeeccCe-e------------eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc-
Q 025649 147 ------LDQSGGK-R------------LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS- 206 (250)
Q Consensus 147 ------~~~~~~~-~------------~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~- 206 (250)
|+..... . ......+.+|...|.+++|+ |++++|++++.||.|++||++++......
T Consensus 208 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 284 (408)
T 4a11_B 208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT---SDGLHLLTVGTDNRMRLWNSSNGENTLVNY 284 (408)
T ss_dssp TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCBCCCCC
T ss_pred CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc---CCCCEEEEecCCCeEEEEECCCCccceecc
Confidence 3332211 0 11122336788999999999 89999999999999999999886543210
Q ss_pred -------------------------------------cccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 207 -------------------------------------INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 207 -------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
...+.+..+.+|...|.+++|+| ++++|++++.||.|++||+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 285 GKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVP 363 (408)
T ss_dssp CCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEE
T ss_pred ccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeC
Confidence 12345566778999999999998 8899999999999999997
Q ss_pred C
Q 025649 250 S 250 (250)
Q Consensus 250 ~ 250 (250)
+
T Consensus 364 ~ 364 (408)
T 4a11_B 364 S 364 (408)
T ss_dssp C
T ss_pred C
Confidence 4
No 74
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.1e-32 Score=211.67 Aligned_cols=213 Identities=10% Similarity=0.079 Sum_probs=147.1
Q ss_pred CcEEEEccccee-----eeeeccCCCCCeeeEEEcC--------CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCC
Q 025649 1 MWQIIDIRQHCL-----YKSLRAGHSSICSSVQFIP--------WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN 67 (250)
Q Consensus 1 ti~iwd~~~~~~-----~~~l~~~h~~~v~~l~~~~--------~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~ 67 (250)
||+|||+++++. +..+. +|.+.|++++|+| +++ +|+||+.|++|+|||++++.++..+..
T Consensus 112 ~v~lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~~~~~~~~~~~----- 184 (393)
T 4gq1_A 112 TVRLIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLTDEGPILAGYP----- 184 (393)
T ss_dssp CEEEEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEETTEEEEEEEE-----
T ss_pred cEEEEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECCCCceeeeecC-----
Confidence 689999988754 34577 9999999999998 677 899999999999999988766555542
Q ss_pred CCCCCcccCCCceeEEecCCCcccCCCC-CEEEEEeCCCeEEEEeCCCceeEeecc------------------------
Q 025649 68 NGNAGQCYNPAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSK------------------------ 122 (250)
Q Consensus 68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~------------------------ 122 (250)
+...+.+++|+| ++ ++|++++.|++|++||+++++......
T Consensus 185 --------~~~~v~~v~~~p------~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 185 --------LSSPGISVQFRP------SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp --------CSSCEEEEEEET------TEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred --------CCCCcEEEEECC------CCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 467899999998 65 589999999999999999865433221
Q ss_pred CCCCCCccceeec-ccceeEEE------eeeeeeccCeeeeeeccccCccccEEEE------------------EeecCC
Q 025649 123 STTKPLKGSQSTS-KVNIRDAE------MEILDQSGGKRLHLDYSVGGHTAAASCV------------------AFSMFG 177 (250)
Q Consensus 123 ~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~v~~~------------------~~~p~~ 177 (250)
..+...+.++.|+ |+++.+++ +..|+.... +....+..|...+..+ .|+|.
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 326 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN---NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR- 326 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSS-
T ss_pred ccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC---CCCceEeeecCccccEEEccccccccccCcceeEEEccC-
Confidence 1123456677775 78888874 223333222 2222333333333222 23320
Q ss_pred CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 178 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 178 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.++.++++|+.||.|++||+.++ ........|..+|.+++|+| ||++||+++.+| +.+|.+
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~---------~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEK---------DSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCT---------TCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCC---------cEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 24557788899999999999987 55556778999999999998 999999999776 555653
No 75
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.7e-32 Score=208.79 Aligned_cols=235 Identities=18% Similarity=0.168 Sum_probs=177.5
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+++|++++++....++ +|.+.|++++|+| +++ +|++|+.||.|++||+.+++....+...............|...|
T Consensus 25 ~~v~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 25 RRVLGLELNKDRDVER-IHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV 102 (408)
T ss_dssp HHHHTEEECTTEEECC-CCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred ceeeccccCcceeeee-ccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence 5678888888888899 9999999999999 888 899999999999999998877666542100000001112267899
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc---eeEEEeeeeee----ccCe
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN---IRDAEMEILDQ----SGGK 153 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~ 153 (250)
.+++|+| .++++|++++.||.|++||+++++........ ..+.++.++|.+ .+++ .+..+. ++..
T Consensus 103 ~~~~~~~-----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 103 ETVQWYP-----HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFE--ETVYSHHMSPVSTKHCLVA-VGTRGPKVQLCDLK 174 (408)
T ss_dssp EEEEECT-----TCTTCEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEECSSCSSCCEEE-EEESSSSEEEEESS
T ss_pred EEEEEcc-----CCCcEEEEEeCCCeEEEeeCCCCccceeccCC--CceeeeEeecCCCCCcEEE-EEcCCCeEEEEeCC
Confidence 9999998 46679999999999999999998877766543 677888888754 4666 333222 2233
Q ss_pred eeeeeccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCccee-cc------cccceeeeeeccCCceeEE
Q 025649 154 RLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQ-TS------INNDLLIKNINLNKKVNWL 225 (250)
Q Consensus 154 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~-~~------~~~~~~~~~~~~~~~v~~~ 225 (250)
..+.+..+.+|...|.+++|+ |+++ ++++|+.||.|++||++...... .. ...........|...|.++
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~---~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWS---PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEEC---SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred CcceeeeecCCCCcEEEEEEC---CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 445566788899999999999 7877 68999999999999998864211 00 0001112235788999999
Q ss_pred EecCCCCCeEEEeeCCceEEEEeCC
Q 025649 226 CTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 226 ~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+|+| ++++|++++.||.|++||++
T Consensus 252 ~~~~-~~~~l~~~~~dg~i~vwd~~ 275 (408)
T 4a11_B 252 CFTS-DGLHLLTVGTDNRMRLWNSS 275 (408)
T ss_dssp EECT-TSSEEEEEETTSCEEEEETT
T ss_pred EEcC-CCCEEEEecCCCeEEEEECC
Confidence 9998 89999999999999999974
No 76
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.4e-31 Score=197.80 Aligned_cols=217 Identities=7% Similarity=-0.022 Sum_probs=145.9
Q ss_pred CcEEEEcccc---eeeeeeccCCCCC-------------------------eeeEEEcCC----CCeEEEEecC------
Q 025649 1 MWQIIDIRQH---CLYKSLRAGHSSI-------------------------CSSVQFIPW----KPWEVISGGL------ 42 (250)
Q Consensus 1 ti~iwd~~~~---~~~~~l~~~h~~~-------------------------v~~l~~~~~----~~~~l~s~s~------ 42 (250)
+|++|+..++ +.+.++. +|+.+ |..|+|+|+ ++ .+++++.
T Consensus 64 ~v~lw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~-~l~s~g~~~~v~~ 141 (356)
T 2w18_A 64 VVSLWKALDAWQWEKLYTWH-FAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQ-VLLKSGNIKAVLG 141 (356)
T ss_dssp EEEEEEESSSSBEEEEEEEE-CCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCE-EEEEEEEEEEEEE
T ss_pred eEEEcccCCCccceeeEEEe-ccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCcccccc-EEEeCCCeEEEEe
Confidence 4899999988 8888888 77754 456666667 55 5666553
Q ss_pred --------------CCeEEEEEc-cCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeE
Q 025649 43 --------------DSKLVMWDF-SKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 107 (250)
Q Consensus 43 --------------dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i 107 (250)
|+.|++|++ .+++.+..+.. |+..+..++|+|.. .++.+|++++.|++|
T Consensus 142 l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~-------------~~~~v~~l~fs~~~---g~~~~LaSgS~D~TI 205 (356)
T 2w18_A 142 LTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFL-------------MPPEETILTFAEVQ---GMQEALLGTTIMNNI 205 (356)
T ss_dssp ETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEE-------------CCCSSCEEEEEEEE---TSTTEEEEEETTSEE
T ss_pred cCCCcEEEecccCCCCcEEEEEECCCCceeeeecc-------------CCCceeeEEeeccC---CCCceEEEecCCCcE
Confidence 555666665 23444443331 35556666666521 267899999999999
Q ss_pred EEEeCCCceeEeeccCCC--CCCccceeecccceeEEEe-----------eeeee----ccCeeeeeeccc-----cCcc
Q 025649 108 DVINIESELNISRSKSTT--KPLKGSQSTSKVNIRDAEM-----------EILDQ----SGGKRLHLDYSV-----GGHT 165 (250)
Q Consensus 108 ~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~~-----~~h~ 165 (250)
++||+++++.+..+..++ ...+.+++|+|+|+++++. +..|. ++....+.+..+ .+|.
T Consensus 206 kIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~ 285 (356)
T 2w18_A 206 VIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA 285 (356)
T ss_dssp EEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC
T ss_pred EEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc
Confidence 999999999888876543 2356677899999988631 11111 111112222221 3565
Q ss_pred ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee-EEEecCCCCCeEEEeeCCceE
Q 025649 166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN-WLCTTPTESENLVVCDTSKVV 244 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i 244 (250)
..+.+..+ ++.++++|+.|++|+|||++++ +++..+.+|...+. .++|+| ||++|++|+.|++|
T Consensus 286 ~~~lsg~~-----sg~~lASgS~DgTIkIWDl~tG---------k~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~D~TI 350 (356)
T 2w18_A 286 GRFLEGDV-----KDHCAAAILTSGTIAIWDLLLG---------QCTALLPPVSDQHWSFVKWSG-TDSHLLAGQKDGNI 350 (356)
T ss_dssp CCEEEEEE-----ETTEEEEEETTSCEEEEETTTC---------SEEEEECCC--CCCCEEEECS-SSSEEEEECTTSCE
T ss_pred ceeEcccc-----CCCEEEEEcCCCcEEEEECCCC---------cEEEEecCCCCCeEEEEEECC-CCCEEEEEECCCcE
Confidence 55443333 3678999999999999999998 66777788887765 589998 99999999999999
Q ss_pred EEEeCC
Q 025649 245 KVYSIS 250 (250)
Q Consensus 245 ~vw~~~ 250 (250)
+|||+.
T Consensus 351 klWd~~ 356 (356)
T 2w18_A 351 FVYHYS 356 (356)
T ss_dssp EEEEEC
T ss_pred EEecCC
Confidence 999974
No 77
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-31 Score=205.07 Aligned_cols=214 Identities=12% Similarity=0.133 Sum_probs=168.7
Q ss_pred CcEEEEc----ccce------eeeeeccC----------CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccce
Q 025649 1 MWQIIDI----RQHC------LYKSLRAG----------HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV 60 (250)
Q Consensus 1 ti~iwd~----~~~~------~~~~l~~~----------h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 60 (250)
+|++||+ .+++ ....+. . |.+.|.+++|+|+++ +|++++.||.|++|| .+++.+..+
T Consensus 69 ~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~~-~~~~~~~~~ 145 (425)
T 1r5m_A 69 VARLARIVETDQEGKKYWKLTIIAELR-HPFALSASSGKTTNQVTCLAWSHDGN-SIVTGVENGELRLWN-KTGALLNVL 145 (425)
T ss_dssp EEEEEEEEEC------CEEEEEEEEEE-CCCCCC------CBCEEEEEECTTSS-EEEEEETTSCEEEEE-TTSCEEEEE
T ss_pred eEEEEEEecccCCcccccccccccccc-ccccccccccCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEe-CCCCeeeec
Confidence 4899999 8887 455555 3 688999999999999 899999999999999 556666666
Q ss_pred ecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCC-------------
Q 025649 61 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP------------- 127 (250)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~------------- 127 (250)
. . |...|.+++|+| ++++|++++.|+.|++||+++++....+......
T Consensus 146 ~-~------------~~~~v~~~~~~~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (425)
T 1r5m_A 146 N-F------------HRAPIVSVKWNK------DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDG 206 (425)
T ss_dssp C-C------------CCSCEEEEEECT------TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------C
T ss_pred c-C------------CCccEEEEEECC------CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCc
Confidence 5 2 578899999999 9999999999999999999998877666554321
Q ss_pred -CccceeecccceeEEEe--eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee
Q 025649 128 -LKGSQSTSKVNIRDAEM--EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 204 (250)
Q Consensus 128 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 204 (250)
.+.++.|+|++.+++.. +....++....+.+..+.+|...|.+++|+ |++++|++++.|+.|++||++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~---- 279 (425)
T 1r5m_A 207 SLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN---DTNKLLLSASDDGTLRIWHGGNG---- 279 (425)
T ss_dssp CCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE---TTTTEEEEEETTSCEEEECSSSB----
T ss_pred ceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC---CCCCEEEEEcCCCEEEEEECCCC----
Confidence 18899999998755521 111122223334556677899999999999 89999999999999999999987
Q ss_pred cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 205 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 205 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+....+..|...|.+++|+| ++ ++++++.|+.|++||++
T Consensus 280 -----~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 280 -----NSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp -----SCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETT
T ss_pred -----ccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECC
Confidence 55566778999999999998 67 89999999999999974
No 78
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=222.82 Aligned_cols=221 Identities=19% Similarity=0.230 Sum_probs=177.0
Q ss_pred CcEEEEcc--cceeeeeeccCCCCCeeeEEEcCC--CCeEEEEecCCCeEEEEEccCCC--CccceecCCCCCCCCCCcc
Q 025649 1 MWQIIDIR--QHCLYKSLRAGHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKGR--PNKIVNFGLPENNGNAGQC 74 (250)
Q Consensus 1 ti~iwd~~--~~~~~~~l~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~ 74 (250)
+|+|||+. +++.+..+. +|.++|.+++|+|+ +. +|++|+.||+|++||+.+++ .+..+. +
T Consensus 32 ~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~-~l~s~s~Dg~I~vwd~~~~~~~~~~~~~-~----------- 97 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGT-ILASCSYDGKVLIWKEENGRWSQIAVHA-V----------- 97 (753)
T ss_dssp EEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCS-EEEEEETTSCEEEEEEETTEEEEEEEEC-C-----------
T ss_pred cEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCC-EEEEEeCCCeEEEEECCCCccccccccc-C-----------
Confidence 48999998 678888999 99999999999988 77 89999999999999999876 333333 2
Q ss_pred cCCCceeEEecCCCcccCCC--CCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeecc-------------cc
Q 025649 75 YNPAFVHAIAIPDADMLDKT--NKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSK-------------VN 138 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~ 138 (250)
|...|.+++|+| + ++++++|+.||.|++||++++... ......+...+.++.|+| ++
T Consensus 98 -h~~~V~~v~~sp------~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~ 170 (753)
T 3jro_A 98 -HSASVNSVQWAP------HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 170 (753)
T ss_dssp -CSSCEEEEEECC------GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGG
T ss_pred -CCCCeEEEEECC------CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCC
Confidence 578899999999 7 999999999999999999986332 222233457899999999 57
Q ss_pred eeEEE------eeeeeeccC-eeeeeeccccCccccEEEEEeecCCCC---CcEEEEeeCCCeEEEEecCCCcceecccc
Q 025649 139 IRDAE------MEILDQSGG-KRLHLDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQGVQTSIN 208 (250)
Q Consensus 139 ~~~~~------~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 208 (250)
..+++ +..|+.... ........+.+|...|.+++|+ |+ ++++++|+.||.|++||++++.....
T Consensus 171 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s---p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~--- 244 (753)
T 3jro_A 171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS---PTVLLRSYLASVSQDRTCIIWTQDNEQGPWK--- 244 (753)
T ss_dssp CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC---CCCSSSEEEEEEESSSCEEEEEESSSSSCCB---
T ss_pred CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec---cCCCCCCEEEEEecCCEEEEecCCCCCCcce---
Confidence 88874 223444332 2335667788999999999999 77 89999999999999999998632210
Q ss_pred cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 209 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
........|...|++++|+| ++++|++|+.||.|++|+++
T Consensus 245 -~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 245 -KTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp -CCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCBCC
T ss_pred -eEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEecC
Confidence 12334456888999999998 89999999999999999974
No 79
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=208.83 Aligned_cols=216 Identities=8% Similarity=0.003 Sum_probs=167.9
Q ss_pred CcEEEEcccce---eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC----CCCccceecCCCCCCCCCCc
Q 025649 1 MWQIIDIRQHC---LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK----GRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 1 ti~iwd~~~~~---~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~----~~~~~~~~~~~~~~~~~~~~ 73 (250)
+|+|||+.+++ .+..+ .|...|.+++|+|+++ +|++|+.||.|++||+.+ .+.+..+. +
T Consensus 46 ~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~---------- 111 (416)
T 2pm9_A 46 SLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANNAINSMARFS-N---------- 111 (416)
T ss_dssp CCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSS-CEEEEESSSCEEEECCSSTTSCCCEEEECC-C----------
T ss_pred eEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCC-eEEEEccCCeEEEeecccccccccchhhcc-C----------
Confidence 48999999876 33344 5899999999999999 899999999999999987 23344443 2
Q ss_pred ccCCCceeEEecCCCcccCCC-CCEEEEEeCCCeEEEEeCCCce------eEeec--cCCCCCCccceeeccc-ceeEEE
Q 025649 74 CYNPAFVHAIAIPDADMLDKT-NKICVVAKGDGVVDVINIESEL------NISRS--KSTTKPLKGSQSTSKV-NIRDAE 143 (250)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~------~~~~~--~~~~~~~~~~~~~~~~-~~~~~~ 143 (250)
|...|.+++|+| + +++|++++.|+.|++||+++++ ..... ...+...+.+++|+|+ +.++++
T Consensus 112 --h~~~v~~~~~~~------~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 183 (416)
T 2pm9_A 112 --HSSSVKTVKFNA------KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS 183 (416)
T ss_dssp --SSSCCCEEEECS------SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred --CccceEEEEEcC------CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEE
Confidence 678899999998 7 8999999999999999999876 33222 2334578999999999 566663
Q ss_pred eeeee----eccCeeeeeeccccCc------cccEEEEEeecCCCCC-cEEEEeeCCC---eEEEEecCCCcceeccccc
Q 025649 144 MEILD----QSGGKRLHLDYSVGGH------TAAASCVAFSMFGERG-KYLISGGNDK---LVKVWDCSRFQGVQTSINN 209 (250)
Q Consensus 144 ~~~~~----~~~~~~~~~~~~~~~h------~~~v~~~~~~p~~~~~-~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~ 209 (250)
+..+ .++....+.+..+..| ...|.+++|+ |++ .++++++.|+ .|++||++++.
T Consensus 184 -~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~d~~~~~i~~~d~~~~~-------- 251 (416)
T 2pm9_A 184 -AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH---PKNSTRVATATGSDNDPSILIWDLRNAN-------- 251 (416)
T ss_dssp -ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC---SSCTTEEEEEECCSSSCCCCEEETTSTT--------
T ss_pred -EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC---CCCCCEEEEEECCCCCceEEEEeCCCCC--------
Confidence 2222 2222223334444444 7889999999 776 6999999998 99999999863
Q ss_pred ceeeeee-ccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 210 DLLIKNI-NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 210 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
..+..+. +|...|.+++|+|.++++|++++.||.|++||++
T Consensus 252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~ 293 (416)
T 2pm9_A 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE 293 (416)
T ss_dssp SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence 2334555 8999999999998788999999999999999974
No 80
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-31 Score=209.46 Aligned_cols=213 Identities=13% Similarity=0.160 Sum_probs=163.1
Q ss_pred EEcccceeeeee-ccCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccC---CCCcc-ceecCCCCCCCCCCcccCCC
Q 025649 5 IDIRQHCLYKSL-RAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSK---GRPNK-IVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 5 wd~~~~~~~~~l-~~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (250)
|+ .+++++..+ . +|.+.|++++|+| +++ +|++|+.||+|++||+.+ +.... ....+ |..
T Consensus 48 w~-~~g~~~~~~~~-~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~------------h~~ 112 (437)
T 3gre_A 48 GN-LRGKLIATLME-NEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD------------CSS 112 (437)
T ss_dssp GG-CCCCEEEEECT-TTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE------------CSS
T ss_pred cc-ccceEEeeecc-CCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccceeeecc------------CCC
Confidence 55 357888888 7 9999999999999 898 899999999999999976 43221 22222 678
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCC---CceeEeeccC---------C--CCCCcccee--ecccceeEE
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE---SELNISRSKS---------T--TKPLKGSQS--TSKVNIRDA 142 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~---~~~~~~~~~~---------~--~~~~~~~~~--~~~~~~~~~ 142 (250)
.|.+++|+| ++++|++++.||.|++||++ .++....... + ....+.++. +++++.+++
T Consensus 113 ~v~~~~~~~------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (437)
T 3gre_A 113 TVTQITMIP------NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186 (437)
T ss_dssp CEEEEEECT------TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred CEEEEEEeC------CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence 999999998 99999999999999999995 3332221111 0 234555555 557888888
Q ss_pred Ee---eeeeeccCeeeeeeccccC--ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee-
Q 025649 143 EM---EILDQSGGKRLHLDYSVGG--HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI- 216 (250)
Q Consensus 143 ~~---~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~- 216 (250)
+. +....++....+.+..+.+ |...|++++|+ |++++|++|+.||.|++||++++ .++..+.
T Consensus 187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s---~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~ 254 (437)
T 3gre_A 187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID---EECCVLILGTTRGIIDIWDIRFN---------VLIRSWSF 254 (437)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC---TTSCEEEEEETTSCEEEEETTTT---------EEEEEEBC
T ss_pred EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC---CCCCEEEEEcCCCeEEEEEcCCc---------cEEEEEec
Confidence 42 1222233344455667776 88999999999 89999999999999999999987 4545543
Q ss_pred ccCCceeEEEecC---CCCCeEEEeeCCceEEEEeCC
Q 025649 217 NLNKKVNWLCTTP---TESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 217 ~~~~~v~~~~~~~---~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.|...|.+++|+| +++.+|++|+.||.|++||++
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 7888999997775 367799999999999999974
No 81
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.9e-32 Score=205.04 Aligned_cols=229 Identities=11% Similarity=0.063 Sum_probs=168.1
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCC---CCeEEEEecCCCeEEEEEccCCC-CccceecCCCCCCCCCCcccC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPW---KPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~---~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~ 76 (250)
+|+|||+.+++.......+|...|.+++|+|+ +. +|++|+.||.|++||+.+++ .+..+. + |
T Consensus 45 ~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~------------~ 110 (357)
T 3i2n_A 45 VIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQR-YLATGDFGGNLHIWNLEAPEMPVYSVK-G------------H 110 (357)
T ss_dssp EEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTC-CEEEEETTSCEEEECTTSCSSCSEEEC-C------------C
T ss_pred EEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCc-eEEEecCCCeEEEEeCCCCCccEEEEE-e------------c
Confidence 48999999888765543379999999999999 57 89999999999999999887 666665 3 5
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce-eEeeccCCC---CCCcccee----ecccceeEEEee---
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL-NISRSKSTT---KPLKGSQS----TSKVNIRDAEME--- 145 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~--- 145 (250)
...|.++.+.+...+.+++++|++++.|+.|++||++++. ....+.... ...+.++. |+|+++++++.+
T Consensus 111 ~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~ 190 (357)
T 3i2n_A 111 KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG 190 (357)
T ss_dssp SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS
T ss_pred ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC
Confidence 7889999543322222399999999999999999999876 444443322 34677777 789999988421
Q ss_pred eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649 146 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 225 (250)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (250)
....++....+. .....|...|.+++|+|..++++++++++.||.|++||++++..... .......+|...|.++
T Consensus 191 ~i~i~d~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~~v~~~ 265 (357)
T 3i2n_A 191 DIKLFDLRNMAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG----FASVSEKAHKSTVWQV 265 (357)
T ss_dssp EEEEEETTTTEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE----EEEEEEECCSSCEEEE
T ss_pred eEEEEECccCce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc----eeeeccCCCcCCEEEE
Confidence 112222222222 22356788999999992111899999999999999999998643211 1112344899999999
Q ss_pred EecCCCCC-eEEEeeCCceEEEEeC
Q 025649 226 CTTPTESE-NLVVCDTSKVVKVYSI 249 (250)
Q Consensus 226 ~~~~~~~~-~l~s~~~d~~i~vw~~ 249 (250)
+|+| +++ +|++++.||.|++||+
T Consensus 266 ~~~~-~~~~~l~~~~~dg~i~iwd~ 289 (357)
T 3i2n_A 266 RHLP-QNRELFLTAGGAGGLHLWKY 289 (357)
T ss_dssp EEET-TEEEEEEEEETTSEEEEEEE
T ss_pred EECC-CCCcEEEEEeCCCcEEEeec
Confidence 9998 666 8999999999999996
No 82
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.8e-32 Score=206.92 Aligned_cols=224 Identities=8% Similarity=0.073 Sum_probs=176.3
Q ss_pred CcEEEEcccceeeeeeccC-----CCCCeeeEEEcCC----CCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAG-----HSSICSSVQFIPW----KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNA 71 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~-----h~~~v~~l~~~~~----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 71 (250)
+|++||+.+++.+..+. . |...|.+++|+|+ +. +|++|+.||.|++||+.+++.+..+. +
T Consensus 45 ~v~vw~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~-~-------- 113 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQ-SYVDADADENFYTCAWTYDSNTSHP-LLAVAGSRGIIRIINPITMQCIKHYV-G-------- 113 (366)
T ss_dssp EEEEEEECGGGCEEEEE-EEECSCTTCCEEEEEEEECTTTCCE-EEEEEETTCEEEEECTTTCCEEEEEE-S--------
T ss_pred EEEEEEcCCCcEEEeee-eccccCCCCcEEEEEeccCCCCCCC-EEEEecCCCEEEEEEchhceEeeeec-C--------
Confidence 37999999888777766 4 5578999999999 55 89999999999999999998887776 3
Q ss_pred CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc--CCCCCCccceeecccceeEEEee----
Q 025649 72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK--STTKPLKGSQSTSKVNIRDAEME---- 145 (250)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---- 145 (250)
|...|.+++|+| .++++|++++.||.|++||+++++....+. ..+...+.+++|+|++.++++.+
T Consensus 114 ----~~~~i~~~~~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 184 (366)
T 3k26_A 114 ----HGNAINELKFHP-----RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS 184 (366)
T ss_dssp ----CCSCEEEEEECS-----SCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ----CCCcEEEEEECC-----CCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCC
Confidence 578999999997 478999999999999999999988777663 34568899999999999998422
Q ss_pred --eeeeccCeee-------------------------eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC
Q 025649 146 --ILDQSGGKRL-------------------------HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 198 (250)
Q Consensus 146 --~~~~~~~~~~-------------------------~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~ 198 (250)
.|+....... .......+|...|.+++|+ ++++++++.|+.|++||++
T Consensus 185 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~d~~i~~wd~~ 259 (366)
T 3k26_A 185 LKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-----GDLILSKSCENAIVCWKPG 259 (366)
T ss_dssp EEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-----TTEEEEECSSSEEEEEEES
T ss_pred EEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-----CCEEEEEecCCEEEEEeCC
Confidence 2332211100 0011233489999999997 4699999999999999998
Q ss_pred CCcceec-----ccccceeeeeeccCCceeEEEecCCC--CCeEEEeeCCceEEEEeCC
Q 025649 199 RFQGVQT-----SINNDLLIKNINLNKKVNWLCTTPTE--SENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 199 ~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~vw~~~ 250 (250)
+...... ......+..+..|...|.+++|+| + +++|++|+.||.|++||++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 260 KMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp STTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECC
T ss_pred CccccccccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECC
Confidence 8654211 011134567778999999999998 6 8999999999999999974
No 83
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.9e-32 Score=206.22 Aligned_cols=212 Identities=15% Similarity=0.120 Sum_probs=160.0
Q ss_pred CcEEEEccc-ceee-eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQ-HCLY-KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~-~~~~-~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|+|||+++ ++.+ ..+. +|...|.+++|+|+++ +|++++.||.|++||+++++.+.... |..
T Consensus 65 ~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~--------------~~~ 128 (368)
T 3mmy_A 65 DVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGS-KVFTASCDKTAKMWDLSSNQAIQIAQ--------------HDA 128 (368)
T ss_dssp EEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE--------------CSS
T ss_pred cEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCC-EEEEEcCCCcEEEEEcCCCCceeecc--------------ccC
Confidence 489999987 5554 7788 9999999999999999 89999999999999999888766443 678
Q ss_pred ceeEEec--CCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCC-------------------------------
Q 025649 79 FVHAIAI--PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT------------------------------- 125 (250)
Q Consensus 79 ~v~~~~~--~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------------------------------- 125 (250)
.|.+++| +| ++++|++++.||.|++||+++++....+..+.
T Consensus 129 ~v~~~~~~~~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 202 (368)
T 3mmy_A 129 PVKTIHWIKAP------NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPS 202 (368)
T ss_dssp CEEEEEEEECS------SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE
T ss_pred ceEEEEEEeCC------CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccc
Confidence 8999999 77 89999999999999999999876554443321
Q ss_pred ---------CCCccceeeccccee----EEE------eeeeeeccCeeeeeeccccCccc------------cEEEEEee
Q 025649 126 ---------KPLKGSQSTSKVNIR----DAE------MEILDQSGGKRLHLDYSVGGHTA------------AASCVAFS 174 (250)
Q Consensus 126 ---------~~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~~~~h~~------------~v~~~~~~ 174 (250)
.....++.+.++... +++ +..|+.........+..+.+|.. .|.+++|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 282 (368)
T 3mmy_A 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH 282 (368)
T ss_dssp EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC
T ss_pred hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe
Confidence 111222222222211 321 11222222211133445566665 79999999
Q ss_pred cCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649 175 MFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 247 (250)
Q Consensus 175 p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw 247 (250)
|++++|++|+.||.|++||++++ +++..+..|...|.+++|+| ++++|++++.|+..+.|
T Consensus 283 ---p~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 283 ---PVHGTLATVGSDGRFSFWDKDAR---------TKLKTSEQLDQPISACCFNH-NGNIFAYASSYDWSKGH 342 (368)
T ss_dssp ---TTTCCEEEEETTSCEEEEETTTT---------EEEEECCCCSSCEEEEEECT-TSSCEEEEECCCSTTCG
T ss_pred ---cCCCEEEEEccCCeEEEEECCCC---------cEEEEecCCCCCceEEEECC-CCCeEEEEecccccccc
Confidence 89999999999999999999987 66677789999999999998 89999999988754443
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.8e-31 Score=209.67 Aligned_cols=227 Identities=12% Similarity=0.138 Sum_probs=161.6
Q ss_pred CcEEEEcccce-----------eeeeeccCCC------------CCeeeEEEcCCC--CeEEEEecCCCeEEEEEccCCC
Q 025649 1 MWQIIDIRQHC-----------LYKSLRAGHS------------SICSSVQFIPWK--PWEVISGGLDSKLVMWDFSKGR 55 (250)
Q Consensus 1 ti~iwd~~~~~-----------~~~~l~~~h~------------~~v~~l~~~~~~--~~~l~s~s~dg~v~iwd~~~~~ 55 (250)
+|+|||+.+++ ....+. +|. ..|.+++|+|++ . +|++++.|++|++||+.+++
T Consensus 51 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~-~l~s~s~d~~i~iw~~~~~~ 128 (447)
T 3dw8_B 51 RVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLPQKNAA-QFLLSTNDKTIKLWKISERD 128 (447)
T ss_dssp EEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECCCCSSS-EEEEEECSSCEEEEEEEEEE
T ss_pred eEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcCCCCcc-eEEEeCCCCeEEEEeccccc
Confidence 48999999877 578888 998 889999999998 6 89999999999999997643
Q ss_pred Cccc-eecCCCC-------CCCC-------------------CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEE
Q 025649 56 PNKI-VNFGLPE-------NNGN-------------------AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 108 (250)
Q Consensus 56 ~~~~-~~~~~~~-------~~~~-------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 108 (250)
.... +...... .... .....|...|.+++|+| ++++|++| .|+.|+
T Consensus 129 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~~~l~s~-~d~~i~ 201 (447)
T 3dw8_B 129 KRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS------DYETYLSA-DDLRIN 201 (447)
T ss_dssp EEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT------TSSEEEEE-CSSEEE
T ss_pred CCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC------CCCEEEEe-CCCeEE
Confidence 3110 0000000 0000 00123788999999999 99999998 799999
Q ss_pred EEeCCCc-eeEeec------cCCCCCCccceeecccc-eeEEE------eeeeeeccCee-eeeeccccCccc-------
Q 025649 109 VINIESE-LNISRS------KSTTKPLKGSQSTSKVN-IRDAE------MEILDQSGGKR-LHLDYSVGGHTA------- 166 (250)
Q Consensus 109 ~~d~~~~-~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~-~~~~~~~~~h~~------- 166 (250)
+||++.. +..... ...+...+.+++|+|++ .++++ +..|+...... ...+..+.+|..
T Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (447)
T 3dw8_B 202 LWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFF 281 (447)
T ss_dssp EEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHH
T ss_pred EEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccc
Confidence 9999953 333321 22345789999999998 77774 22333332221 111455666665
Q ss_pred -----cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC-CcceecccccceeeeeeccCCc---------------eeEE
Q 025649 167 -----AASCVAFSMFGERGKYLISGGNDKLVKVWDCSR-FQGVQTSINNDLLIKNINLNKK---------------VNWL 225 (250)
Q Consensus 167 -----~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~---------------v~~~ 225 (250)
.|.+++|+ |+|++|++++. +.|++||++. + .++..+..|... +..+
T Consensus 282 ~~~~~~v~~~~~s---~~g~~l~~~~~-~~v~iwd~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 348 (447)
T 3dw8_B 282 SEIISSISDVKFS---HSGRYMMTRDY-LSVKVWDLNMEN---------RPVETYQVHEYLRSKLCSLYENDCIFDKFEC 348 (447)
T ss_dssp HHHTTCEEEEEEC---TTSSEEEEEES-SEEEEEETTCCS---------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCE
T ss_pred cccCceEEEEEEC---CCCCEEEEeeC-CeEEEEeCCCCc---------cccceeeccccccccccccccccccccceEE
Confidence 89999999 89999999998 9999999987 5 444455566432 3348
Q ss_pred EecCCCCCeEEEeeCCceEEEEeCC
Q 025649 226 CTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 226 ~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+|+| ++++|++|+.||.|++||+.
T Consensus 349 ~~s~-~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 349 CWNG-SDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp EECT-TSSEEEEECSTTEEEEEETT
T ss_pred EECC-CCCEEEEeccCCEEEEEEcC
Confidence 9998 88999999999999999974
No 85
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-30 Score=194.53 Aligned_cols=225 Identities=12% Similarity=0.070 Sum_probs=170.8
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC---CccceecCCCCC----------
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPEN---------- 67 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~~---------- 67 (250)
+|++||+.+++....+. .|...|.+++|+|+++ +|++++.||.|++|++.... .+..+..+....
T Consensus 40 ~v~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 117 (313)
T 3odt_A 40 TVRLWSKDDQWLGTVVY-TGQGFLNSVCYDSEKE-LLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVV 117 (313)
T ss_dssp EEEEEEESSSEEEEEEE-ECSSCEEEEEEETTTT-EEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEE
T ss_pred cEEEEECCCCEEEEEee-cCCccEEEEEECCCCC-EEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEE
Confidence 48999999999999999 9999999999999999 89999999999999987542 333332110000
Q ss_pred ---------------CCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccce
Q 025649 68 ---------------NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ 132 (250)
Q Consensus 68 ---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 132 (250)
........+...+.++.+.| ++++++++++.|+.|++||. +.........+...+.++
T Consensus 118 ~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~ 190 (313)
T 3odt_A 118 ISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVS-----FSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHL 190 (313)
T ss_dssp EEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEE-----TTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEE
T ss_pred EEEeCCCCEEEEcCCcEEEecccCCCceeEEEEcc-----CCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEE
Confidence 00001122455666666655 57889999999999999993 344455555466889999
Q ss_pred eecccceeEEEe---eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccc
Q 025649 133 STSKVNIRDAEM---EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN 209 (250)
Q Consensus 133 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 209 (250)
+++|++. +++. +....++....+.+..+.+|...|.+++|+ |++ .+++++.||.|++||++++
T Consensus 191 ~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~---~~~-~l~~~~~dg~v~iwd~~~~--------- 256 (313)
T 3odt_A 191 AVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL---PNG-DIVSCGEDRTVRIWSKENG--------- 256 (313)
T ss_dssp EEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC---TTS-CEEEEETTSEEEEECTTTC---------
T ss_pred EEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe---cCC-CEEEEecCCEEEEEECCCC---------
Confidence 9999999 5421 112223334455667788999999999999 788 5889999999999999997
Q ss_pred ceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 210 DLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+.+..+..|...|.+++|+| +++ +++++.||.|++||++
T Consensus 257 ~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 257 SLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp CEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEEEESC
T ss_pred ceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEEEeCC
Confidence 66677788999999999998 776 6779999999999974
No 86
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-32 Score=211.00 Aligned_cols=212 Identities=15% Similarity=0.169 Sum_probs=167.6
Q ss_pred CcEEEEcccceeeeeeccC--CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAG--HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|++||+.+++.+..+. + |...|++++|+|++. +|++|+.||.|++||+++++++..+..+ +..
T Consensus 193 ~i~iwd~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~~ 258 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIE-NSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFG------------DHA 258 (437)
T ss_dssp EEEEEETTTCCEEEEEE-CCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCT------------TCE
T ss_pred eEEEEeCCCCeeeEEEc-cCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecC------------CCC
Confidence 48999999999999999 7 899999999999999 8999999999999999998888877644 567
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD 158 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (250)
.|.+++++|. +.+++.+|++++.||.|++||+++++....+..+ ...+..+.|+|+++.+. .
T Consensus 259 ~v~~~~~~~~--~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~---------------~ 320 (437)
T 3gre_A 259 PITHVEVCQF--YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINS-DEQPSMEHFLPIEKGLE---------------E 320 (437)
T ss_dssp EEEEEEECTT--TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESS-SSCCCGGGGSCBCSSGG---------------G
T ss_pred ceEEEEeccc--cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcC-CCCCccceecccccccc---------------c
Confidence 8999955541 1127889999999999999999999887776655 36677888998876653 1
Q ss_pred ccccC--ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccc---------------------------
Q 025649 159 YSVGG--HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN--------------------------- 209 (250)
Q Consensus 159 ~~~~~--h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------------------- 209 (250)
..+.+ |...|.+++|+ ++++|++|+.|+.|++||+++++........
T Consensus 321 ~~~~~~~~~~~v~~l~~~----~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (437)
T 3gre_A 321 LNFCGIRSLNALSTISVS----NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTS 396 (437)
T ss_dssp CCCCCCCSGGGGCCEEEE----TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC---
T ss_pred ceecccccCCceEEEEEC----CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccccc
Confidence 12445 89999999998 4589999999999999999988654321110
Q ss_pred -ceeeeeeccCCceeEEEecCC-CCCeEEEeeCCceEEEEe
Q 025649 210 -DLLIKNINLNKKVNWLCTTPT-ESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 210 -~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~vw~ 248 (250)
........|...|++++|.+. ++.+|++|+.||.|+||+
T Consensus 397 ~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 397 THSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 000112238999999999984 367899999999999995
No 87
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.6e-31 Score=200.70 Aligned_cols=208 Identities=12% Similarity=0.055 Sum_probs=146.8
Q ss_pred EEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEE
Q 025649 4 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI 83 (250)
Q Consensus 4 iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 83 (250)
||++.+.+.+..++ +|.+.|.+++|+|+++ +|++|+.++ +++||+.+++....... ..+..+
T Consensus 3 i~s~~~~~~~~~~~-~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~~~---------------~~~~~~ 64 (355)
T 3vu4_A 3 LGSMITRNPIVPEN-HVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQEM---------------RHLSKV 64 (355)
T ss_dssp -----------------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEEEC---------------SCCCEE
T ss_pred cccccccCCccccc-cCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeeeec---------------CCeEEE
Confidence 67778888888888 9999999999999999 899988775 78999987665544331 235667
Q ss_pred ecCCCcccCCCCCEE-EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeec---------
Q 025649 84 AIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQS--------- 150 (250)
Q Consensus 84 ~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------- 150 (250)
.+.+ +++.+ ++++.|+.|++||+.+++.+..+... ..+.++.++++...++. +..|+..
T Consensus 65 ~~~~------~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 136 (355)
T 3vu4_A 65 RMLH------RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVD--APVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDD 136 (355)
T ss_dssp EECT------TSSEEEEECSSTTEEEEEETTTTEEEEEEECS--SCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCC
T ss_pred EEcC------CCCEEEEEECCccEEEEEECCCCcEEEEEECC--CceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEe
Confidence 7776 56665 67788899999999998887766543 56777777776533322 1111111
Q ss_pred ----------------------------cCeee---------------ee-eccccCccccEEEEEeecCCCCCcEEEEe
Q 025649 151 ----------------------------GGKRL---------------HL-DYSVGGHTAAASCVAFSMFGERGKYLISG 186 (250)
Q Consensus 151 ----------------------------~~~~~---------------~~-~~~~~~h~~~v~~~~~~p~~~~~~~l~s~ 186 (250)
+.... ++ +..+.+|...|.+++|+ |+|++|++|
T Consensus 137 ~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s---~~g~~l~s~ 213 (355)
T 3vu4_A 137 IRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN---RKSDMVATC 213 (355)
T ss_dssp EEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC---TTSSEEEEE
T ss_pred ccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC---CCCCEEEEE
Confidence 11111 11 56788999999999999 899999999
Q ss_pred eCCCe-EEEEecCCCcceecccccceeeeee-c-cCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 187 GNDKL-VKVWDCSRFQGVQTSINNDLLIKNI-N-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 187 ~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+.|++ |++||++++ +.+..+. + |...|.+++|+| ++++|++++.|+.|++||++
T Consensus 214 s~d~~~v~iwd~~~~---------~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDG---------VLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp ETTCSEEEEEETTTC---------CEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEESS
T ss_pred eCCCCEEEEEECCCC---------cEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEEcc
Confidence 99998 999999997 5555665 5 999999999998 89999999999999999974
No 88
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-30 Score=202.13 Aligned_cols=213 Identities=12% Similarity=0.123 Sum_probs=170.6
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+.+++....+...|...|.+++|+|+++ +|++|+.||.|++||+.+++.+..+. + |...|
T Consensus 114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~------------~~~~v 179 (401)
T 4aez_A 114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGS-FLSVGLGNGLVDIYDVESQTKLRTMA-G------------HQARV 179 (401)
T ss_dssp EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEEC-C------------CSSCE
T ss_pred eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCC-EEEEECCCCeEEEEECcCCeEEEEec-C------------CCCce
Confidence 4899999999998888834899999999999999 89999999999999999998887776 3 57889
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHL 157 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 157 (250)
.+++|+ ++++++++.||.|++||++...........+...+.+++|+|++.++++.+ ....++....+.
T Consensus 180 ~~~~~~--------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 251 (401)
T 4aez_A 180 GCLSWN--------RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP 251 (401)
T ss_dssp EEEEEE--------TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE
T ss_pred EEEEEC--------CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc
Confidence 999885 469999999999999999954433333334458899999999999998422 122233344455
Q ss_pred eccccCccccEEEEEeecCCCCC-cEEEEee--CCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649 158 DYSVGGHTAAASCVAFSMFGERG-KYLISGG--NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~~-~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 234 (250)
+..+..|...|.+++|+ |++ .++++++ .|+.|++||++++ ..+..+ .+...|.+++|+| ++++
T Consensus 252 ~~~~~~~~~~v~~~~~~---p~~~~ll~~~~gs~d~~i~i~d~~~~---------~~~~~~-~~~~~v~~~~~s~-~~~~ 317 (401)
T 4aez_A 252 KFTKTNHNAAVKAVAWC---PWQSNLLATGGGTMDKQIHFWNAATG---------ARVNTV-DAGSQVTSLIWSP-HSKE 317 (401)
T ss_dssp EEEECCCSSCCCEEEEC---TTSTTEEEEECCTTTCEEEEEETTTC---------CEEEEE-ECSSCEEEEEECS-SSSE
T ss_pred cEEecCCcceEEEEEEC---CCCCCEEEEecCCCCCEEEEEECCCC---------CEEEEE-eCCCcEEEEEECC-CCCe
Confidence 66778899999999999 654 5677765 7999999999987 333333 4677899999998 8888
Q ss_pred EEE--eeCCceEEEEeC
Q 025649 235 LVV--CDTSKVVKVYSI 249 (250)
Q Consensus 235 l~s--~~~d~~i~vw~~ 249 (250)
+++ |+.||.|++||+
T Consensus 318 l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 318 IMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp EEEEECTTTCEEEEEEE
T ss_pred EEEEeecCCCcEEEEec
Confidence 888 558999999996
No 89
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.9e-30 Score=225.22 Aligned_cols=216 Identities=10% Similarity=0.120 Sum_probs=181.6
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+.+++.+..+. +|.+.|.+++|+|+++ +|++|+.||+|++||+.+++.+..+. + |...|
T Consensus 638 ~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~-~------------~~~~v 702 (1249)
T 3sfz_A 638 TLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGKLVHTYD-E------------HSEQV 702 (1249)
T ss_dssp CEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE-C------------CSSCE
T ss_pred eEEEEECCCCCEEEEec-cCCCCEEEEEEecCCC-EEEEEeCCCeEEEEECCCCceEEEEc-C------------CCCcE
Confidence 58999999999999999 9999999999999999 89999999999999999999888886 3 57889
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKR 154 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 154 (250)
.+++|+| +.++.++++++.|+.|++||+++++.......+ ...+.+++|+|+++.+++ +..|+......
T Consensus 703 ~~~~~~~----~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 703 NCCHFTN----KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH-TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp EEEEECS----SSSCCEEEEEETTSCEEEEETTSSSEEEEECCC-SSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred EEEEEec----CCCceEEEEEeCCCeEEEEECCCcchhheecCC-CCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence 9999998 224568999999999999999998877766654 478999999999998884 22344322211
Q ss_pred eee---------------------------------------------------ecc-ccCccccEEEEEeecCCCCCcE
Q 025649 155 LHL---------------------------------------------------DYS-VGGHTAAASCVAFSMFGERGKY 182 (250)
Q Consensus 155 ~~~---------------------------------------------------~~~-~~~h~~~v~~~~~~p~~~~~~~ 182 (250)
... +.. ..+|...|.+++|+ |++++
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s---p~~~~ 854 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS---PYDHL 854 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC---SSTTE
T ss_pred cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc---CCCCE
Confidence 100 011 12678889999999 89999
Q ss_pred EEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 183 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 183 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+++++.||.|++||+.++ ..+....+|...|.+++|+| ++++|++++.||.|++|++
T Consensus 855 l~~~~~dg~v~vwd~~~~---------~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 855 AVIALSQYCVELWNIDSR---------LKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp EEEECSSSCEEEEETTTT---------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEH
T ss_pred EEEEeCCCeEEEEEcCCC---------ceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEc
Confidence 999999999999999987 56677889999999999998 8999999999999999985
No 90
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=9.1e-31 Score=199.11 Aligned_cols=214 Identities=11% Similarity=0.069 Sum_probs=160.0
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc---------CCCCccceecCCCCCCCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS---------KGRPNKIVNFGLPENNGNA 71 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~---------~~~~~~~~~~~~~~~~~~~ 71 (250)
+|++||+++++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.+..+..+
T Consensus 59 ~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-------- 123 (343)
T 3lrv_A 59 ALHFTQLKDSKTITTIT---TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD-------- 123 (343)
T ss_dssp EEEEEEESSSSCEEEEE---EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC--------
T ss_pred cEEEEECCCCcEEEEEe---cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC--------
Confidence 48999999999888886 467888899987 8999999999999765 33333344333
Q ss_pred CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee---
Q 025649 72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD--- 148 (250)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 148 (250)
|...|.+++++| ..+++++++++.||.|++||+++++............+.+++|+|++.++++ +..|
T Consensus 124 ----~~~~v~~~~~~~----~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~las-g~~dg~i 194 (343)
T 3lrv_A 124 ----SANEIIYMYGHN----EVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLAL-YSPDGIL 194 (343)
T ss_dssp ----CSSCEEEEECCC-------CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEE-ECTTSCE
T ss_pred ----CCCCEEEEEcCC----CCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEE-EcCCCEE
Confidence 557899999986 1268899999999999999999988866655555567999999999999984 2222
Q ss_pred -eccCeeeeee-ccccC-ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee--
Q 025649 149 -QSGGKRLHLD-YSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN-- 223 (250)
Q Consensus 149 -~~~~~~~~~~-~~~~~-h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-- 223 (250)
.++....+.+ ..+.+ |...|.+++|+ |++.+|++++ |+.|++||+++..... .+..+..|...+.
T Consensus 195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs---~~g~~l~s~~-~~~v~iwd~~~~~~~~------~~~~~~~~~~~~~~~ 264 (343)
T 3lrv_A 195 DVYNLSSPDQASSRFPVDEEAKIKEVKFA---DNGYWMVVEC-DQTVVCFDLRKDVGTL------AYPTYTIPEFKTGTV 264 (343)
T ss_dssp EEEESSCTTSCCEECCCCTTSCEEEEEEC---TTSSEEEEEE-SSBEEEEETTSSTTCB------SSCCCBC-----CCE
T ss_pred EEEECCCCCCCccEEeccCCCCEEEEEEe---CCCCEEEEEe-CCeEEEEEcCCCCcce------eecccccccccccce
Confidence 2223333333 46676 99999999999 8999999999 5599999999975432 1112222333444
Q ss_pred EEEecCCCCCeEEEeeC-CceEEEEeC
Q 025649 224 WLCTTPTESENLVVCDT-SKVVKVYSI 249 (250)
Q Consensus 224 ~~~~~~~~~~~l~s~~~-d~~i~vw~~ 249 (250)
+++|+| ++++|++++. |+.|++|++
T Consensus 265 ~~~~~~-~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 265 TYDIDD-SGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp EEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred EEEECC-CCCEEEEecCCCCcEEEEEE
Confidence 599998 8999999888 999999986
No 91
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.98 E-value=2e-30 Score=199.98 Aligned_cols=210 Identities=7% Similarity=0.015 Sum_probs=157.1
Q ss_pred CcEEEEcccceeeeeec--cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHCLYKSLR--AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|++||+.+ +.+..+. .+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+. . |..
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~-~~~~~~~~~-~------------h~~ 205 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGL-DGHEIFKEK-L------------HKA 205 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEET-TSCEEEEEE-C------------SSS
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEEC-CCCEEEEec-c------------CCC
Confidence 489999985 4455554 13458899999999999 8999999999999999 466666665 2 578
Q ss_pred ceeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCC----ceeEeeccCCCCCCccceeecc-cceeEEEee---eeee
Q 025649 79 FVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIES----ELNISRSKSTTKPLKGSQSTSK-VNIRDAEME---ILDQ 149 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~ 149 (250)
.|.+++|+| +++ ++++++.|+.|++||+++ +...... .+...+.+++|+| ++.++++.+ ....
T Consensus 206 ~v~~~~~~~------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 206 KVTHAEFNP------RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp CEEEEEECS------SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred cEEEEEECC------CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 899999999 888 999999999999999997 4444444 3457899999999 999998422 1112
Q ss_pred ccCeeeeeeccccC-------cc----------ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccccee
Q 025649 150 SGGKRLHLDYSVGG-------HT----------AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL 212 (250)
Q Consensus 150 ~~~~~~~~~~~~~~-------h~----------~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 212 (250)
++....+....+.+ |. ..+..++|+ |++++ +|+.|+.|++||++++ +.+
T Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s---~dg~~--s~s~d~~i~iwd~~~~---------~~~ 343 (383)
T 3ei3_B 278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY---PDDQL--LLNDKRTIDIYDANSG---------GLV 343 (383)
T ss_dssp EETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECB---CCTTT--CTTCCCCEEEEETTTC---------CEE
T ss_pred EECCCCccccccccccccccccccceEEeccCCCCceEEEec---CCccc--ccCCCCeEEEEecCCC---------cee
Confidence 22222222222222 22 344557777 67776 8889999999999997 555
Q ss_pred eeeec--cCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 213 IKNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 213 ~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
..+.+ |...+..++|+| ++++|++|+ |+.|++||++
T Consensus 344 ~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 344 HQLRDPNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp EEECBTTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC
T ss_pred eeecCCCCCceEEEEEEec-CccEEEEec-CCcEEEEecC
Confidence 56655 456677779998 899999997 9999999984
No 92
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1.2e-30 Score=202.54 Aligned_cols=216 Identities=12% Similarity=0.094 Sum_probs=167.9
Q ss_pred CcEEEEcccc-------eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcccee-cCCCCCCCCCC
Q 025649 1 MWQIIDIRQH-------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN-FGLPENNGNAG 72 (250)
Q Consensus 1 ti~iwd~~~~-------~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~ 72 (250)
+|+|||+.++ +.+..+. +|...|.+++|+|+++.+|++++.||.|++||+++++.+..+. ..
T Consensus 105 ~v~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------- 174 (402)
T 2aq5_A 105 TVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV--------- 174 (402)
T ss_dssp EEEEEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT---------
T ss_pred eEEEEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC---------
Confidence 4899999987 6678888 9999999999999984489999999999999999998877773 23
Q ss_pred cccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec-cCCCCCCccceeecccceeEEEe------e
Q 025649 73 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-KSTTKPLKGSQSTSKVNIRDAEM------E 145 (250)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~ 145 (250)
|...|.+++|+| ++++|++++.|+.|++||+++++....+ ..+....+.++.|+|++.++++. +
T Consensus 175 ---~~~~v~~~~~~~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~ 245 (402)
T 2aq5_A 175 ---HPDTIYSVDWSR------DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER 245 (402)
T ss_dssp ---CCSCEEEEEECT------TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred ---CCCceEEEEECC------CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence 578899999999 9999999999999999999999888777 45544558999999999988842 1
Q ss_pred eeeeccCeeeee-eccc-cCccccEEEEEeecCCCCCcEEE-EeeCCCeEEEEecCCCcceecccccceeeeeec--cCC
Q 025649 146 ILDQSGGKRLHL-DYSV-GGHTAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN--LNK 220 (250)
Q Consensus 146 ~~~~~~~~~~~~-~~~~-~~h~~~v~~~~~~p~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~ 220 (250)
....++...... +... ..|...+.+++|+ |++++|+ +|+.||.|++||+.++.. .+..+.. |..
T Consensus 246 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~g~~dg~i~i~d~~~~~~--------~~~~l~~~~~~~ 314 (402)
T 2aq5_A 246 QVALWDTKHLEEPLSLQELDTSSGVLLPFFD---PDTNIVYLCGKGDSSIRYFEITSEAP--------FLHYLSMFSSKE 314 (402)
T ss_dssp EEEEEETTBCSSCSEEEECCCCSSCEEEEEE---TTTTEEEEEETTCSCEEEEEECSSTT--------CEEEEEEECCSS
T ss_pred eEEEEcCccccCCceEEeccCCCceeEEEEc---CCCCEEEEEEcCCCeEEEEEecCCCc--------ceEeecccccCC
Confidence 112222222111 1111 2466789999999 8888886 566799999999998742 1223333 568
Q ss_pred ceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 221 KVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 221 ~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.|.+++|+| ++.++++ .++.+++|++
T Consensus 315 ~v~~~~~sp-~~~~~~s--~~~~~~~~~l 340 (402)
T 2aq5_A 315 SQRGMGYMP-KRGLEVN--KCEIARFYKL 340 (402)
T ss_dssp CCSEEEECC-GGGSCGG--GTEEEEEEEE
T ss_pred cccceEEec-cccccee--cceeEEEEEc
Confidence 999999998 7776654 5679999986
No 93
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=6.2e-30 Score=200.46 Aligned_cols=205 Identities=16% Similarity=0.242 Sum_probs=169.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+.+++.+..+. +|...|.+++| ++. +|++|+.||+|++||+.+++.+..+. + |...|
T Consensus 154 ~i~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~-~------------h~~~v 216 (435)
T 1p22_A 154 TIKIWDKNTLECKRILT-GHTGSVLCLQY--DER-VIITGSSDSTVRVWDVNTGEMLNTLI-H------------HCEAV 216 (435)
T ss_dssp CEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSS-EEEEEETTSCEEEEESSSCCEEEEEC-C------------CCSCE
T ss_pred eEEEEeCCCCeEEEEEc-CCCCcEEEEEE--CCC-EEEEEcCCCeEEEEECCCCcEEEEEc-C------------CCCcE
Confidence 58999999999999999 99999999999 566 89999999999999999998887776 2 57789
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe--eccCCCCCCccceeecccceeEEEe---eeeeeccCeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS--RSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSGGKRL 155 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 155 (250)
.++++++ ..+++|+.||.|++||++++.... .....+...+.++++ +++++++. +....++....
T Consensus 217 ~~l~~~~--------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~ 286 (435)
T 1p22_A 217 LHLRFNN--------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC 286 (435)
T ss_dssp EEEECCT--------TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred EEEEEcC--------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC
Confidence 9999874 489999999999999999876442 333344577888888 67777732 12223334445
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
+.+..+.+|...|.++.|+ ++++++|+.||.|++||++++ ..+..+.+|...|.++++ ++.+|
T Consensus 287 ~~~~~~~~~~~~v~~~~~~-----~~~l~~g~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~~~~---~~~~l 349 (435)
T 1p22_A 287 EFVRTLNGHKRGIACLQYR-----DRLVVSGSSDNTIRLWDIECG---------ACLRVLEGHEELVRCIRF---DNKRI 349 (435)
T ss_dssp CEEEEEECCSSCEEEEEEE-----TTEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEC---CSSEE
T ss_pred cEEEEEcCCCCcEEEEEeC-----CCEEEEEeCCCeEEEEECCCC---------CEEEEEeCCcCcEEEEEe---cCCEE
Confidence 5677888999999999986 479999999999999999997 666778899999999988 56799
Q ss_pred EEeeCCceEEEEeC
Q 025649 236 VVCDTSKVVKVYSI 249 (250)
Q Consensus 236 ~s~~~d~~i~vw~~ 249 (250)
++|+.||.|++||+
T Consensus 350 ~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 350 VSGAYDGKIKVWDL 363 (435)
T ss_dssp EEEETTSCEEEEEH
T ss_pred EEEeCCCcEEEEEC
Confidence 99999999999996
No 94
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.98 E-value=3.3e-30 Score=209.88 Aligned_cols=211 Identities=15% Similarity=0.158 Sum_probs=174.2
Q ss_pred CcEEEEcccc----eeeeeeccCCCCC-eeeEEEcC--CCCeEEEEecCCCeEEEEEccCC--------CCccceecCCC
Q 025649 1 MWQIIDIRQH----CLYKSLRAGHSSI-CSSVQFIP--WKPWEVISGGLDSKLVMWDFSKG--------RPNKIVNFGLP 65 (250)
Q Consensus 1 ti~iwd~~~~----~~~~~l~~~h~~~-v~~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~--------~~~~~~~~~~~ 65 (250)
+|++||++++ +....+. +|... |++++|+| +++ +|++|+.||.|++||+.++ +.+..+. .
T Consensus 40 ~v~v~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-~-- 114 (615)
T 1pgu_A 40 SAFVRCLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-V-- 114 (615)
T ss_dssp EEEEEECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-C--
T ss_pred eEEEEECCCCCCccccceEEe-cCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCcccccccccccchhh-c--
Confidence 3789999999 8899999 99999 99999999 999 8999999999999999755 3444444 1
Q ss_pred CCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC----CeEEEEeCCCceeEeeccCCCCCCccceeecccce-e
Q 025649 66 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI-R 140 (250)
Q Consensus 66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 140 (250)
+...|.+++|+| ++++|++++.+ +.|.+|| .++....+.. +...+.+++|+|+++ .
T Consensus 115 ----------~~~~v~~~~~s~------~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 175 (615)
T 1pgu_A 115 ----------LAGPISDISWDF------EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSG-HSQRINACHLKQSRPMR 175 (615)
T ss_dssp ----------CSSCEEEEEECT------TSSEEEEEECCSSCSEEEEETT--TCCEEEECCS-CSSCEEEEEECSSSSCE
T ss_pred ----------ccccEEEEEEeC------CCCEEEEeccCCCCccEEEEEE--CCCcceeeec-CCccEEEEEECCCCCcE
Confidence 467899999999 99999999987 7899998 4444444443 457899999999998 4
Q ss_pred EEEeee----eeeccCeeeeeeccccCccc---cEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCCcceeccccccee
Q 025649 141 DAEMEI----LDQSGGKRLHLDYSVGGHTA---AASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL 212 (250)
Q Consensus 141 ~~~~~~----~~~~~~~~~~~~~~~~~h~~---~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 212 (250)
++ .+. ...++....+.+..+.+|.. .|.+++|+ |+ +++|++++.||.|++||++++ +.+
T Consensus 176 l~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~vwd~~~~---------~~~ 242 (615)
T 1pgu_A 176 SM-TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS---PDSGEFVITVGSDRKISCFDGKSG---------EFL 242 (615)
T ss_dssp EE-EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC---STTCCEEEEEETTCCEEEEETTTC---------CEE
T ss_pred EE-EEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC---CCCCCEEEEEeCCCeEEEEECCCC---------CEe
Confidence 55 333 22333445566678888998 99999999 88 999999999999999999987 454
Q ss_pred eee-e---ccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 213 IKN-I---NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 213 ~~~-~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
..+ . .|...|.+++|+ ++++|++++.|+.|++||++
T Consensus 243 ~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 243 KYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp EECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETT
T ss_pred EEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECC
Confidence 555 4 899999999998 78899999999999999974
No 95
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=197.94 Aligned_cols=199 Identities=10% Similarity=0.035 Sum_probs=152.7
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC-----------ccceecCCCCCCCCCCcccCC-----------
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-----------NKIVNFGLPENNGNAGQCYNP----------- 77 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~----------- 77 (250)
|.+.|++++|+|+++ +|++|+.||.|++||+.+++. ...+. + |.
T Consensus 27 ~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~------------h~~~~~~~~~~~~ 92 (447)
T 3dw8_B 27 EADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-S------------HEPEFDYLKSLEI 92 (447)
T ss_dssp GGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-C------------CCCEEEGGGTEEE
T ss_pred ccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-c------------ccccccccccccc
Confidence 678999999999999 899999999999999987762 33343 2 44
Q ss_pred -CceeEEecCCCcccCCCC--CEEEEEeCCCeEEEEeCCCceeEe-----------------------------------
Q 025649 78 -AFVHAIAIPDADMLDKTN--KICVVAKGDGVVDVINIESELNIS----------------------------------- 119 (250)
Q Consensus 78 -~~v~~~~~~~~~~~~~~~--~~l~~~~~d~~i~~~d~~~~~~~~----------------------------------- 119 (250)
..|.+++|+| ++ .+|++++.|+.|++||+.++....
T Consensus 93 ~~~V~~l~~~~------~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (447)
T 3dw8_B 93 EEKINKIRWLP------QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA 166 (447)
T ss_dssp CCCCCEEEECC------CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE
T ss_pred cCceEEEEEcC------CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec
Confidence 7799999999 76 799999999999999998744321
Q ss_pred ----eccCCCCCCccceeecccceeEEEeeeeeec----cCe-eeeeec-------cccCccccEEEEEeecCCCCC-cE
Q 025649 120 ----RSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGK-RLHLDY-------SVGGHTAAASCVAFSMFGERG-KY 182 (250)
Q Consensus 120 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~-------~~~~h~~~v~~~~~~p~~~~~-~~ 182 (250)
.....+...+.+++|+|+++++++ + .|.. +.. ..+.+. .+.+|...|.+++|+ |++ ++
T Consensus 167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~ 241 (447)
T 3dw8_B 167 SPRRIFANAHTYHINSISINSDYETYLS-A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH---PNSCNT 241 (447)
T ss_dssp EEEEEECSCCSSCCCEEEECTTSSEEEE-E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC---SSCTTE
T ss_pred cceEEeccCCCcceEEEEEcCCCCEEEE-e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC---CCCCcE
Confidence 222345678999999999999985 3 2332 222 222222 467899999999999 887 99
Q ss_pred EEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC------------ceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 183 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK------------KVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 183 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
|++|+.||.|++||++++.... .....+..|.. .|.+++|+| ++++|++++. +.|++||++
T Consensus 242 l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~ 314 (447)
T 3dw8_B 242 FVYSSSKGTIRLCDMRASALCD-----RHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLN 314 (447)
T ss_dssp EEEEETTSCEEEEETTTCSSSC-----TTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETT
T ss_pred EEEEeCCCeEEEEECcCCcccc-----ceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCC
Confidence 9999999999999999874310 11345555554 899999998 8999999998 999999974
No 96
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.1e-30 Score=216.29 Aligned_cols=194 Identities=10% Similarity=-0.001 Sum_probs=156.0
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
+|.+.|++++|+|+++ +||+|+.||+|++||..+.+....+. +...|.+++|+| +++|
T Consensus 15 gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~~~~--------------~~~~V~~l~fsp-------g~~L 72 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVIKLE--------------DRSAIKEMRFVK-------GIYL 72 (902)
T ss_dssp ECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEEECS--------------SCCCEEEEEEET-------TTEE
T ss_pred CCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEEEcC--------------CCCCEEEEEEcC-------CCEE
Confidence 8999999999999999 99999999999999987765544332 467899999996 5699
Q ss_pred EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCeeee-ee-------ccccCc
Q 025649 99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKRLH-LD-------YSVGGH 164 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~-------~~~~~h 164 (250)
++++.|++|++||+++++....+.. ...+.+++|+|+++++++ +..|+........ .+ ..+.+|
T Consensus 73 ~S~s~D~~v~lWd~~~~~~~~~~~~--~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h 150 (902)
T 2oaj_A 73 VVINAKDTVYVLSLYSQKVLTTVFV--PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR 150 (902)
T ss_dssp EEEETTCEEEEEETTTCSEEEEEEC--SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred EEEECcCeEEEEECCCCcEEEEEcC--CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC
Confidence 9999999999999999887766653 368999999999999984 2234433222110 01 345789
Q ss_pred cccEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCCcceecccccceeeeee------------------ccCCceeEE
Q 025649 165 TAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI------------------NLNKKVNWL 225 (250)
Q Consensus 165 ~~~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------------------~~~~~v~~~ 225 (250)
.+.|.+++|+ |+ +..+++|+.||.| +||++++... ..+. .|...|+++
T Consensus 151 ~~~V~sl~~s---p~~~~~l~~g~~dg~v-lWd~~~~~~~---------~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v 217 (902)
T 2oaj_A 151 LSPIVSIQWN---PRDIGTVLISYEYVTL-TYSLVENEIK---------QSFIYELPPFAPGGDFSEKTNEKRTPKVIQS 217 (902)
T ss_dssp CCCCCEEEEE---TTEEEEEEEECSSCEE-EEETTTTEEE---------EEECCCBCTTCCCSTTCCCTTSCBCCCEEEE
T ss_pred CCCeEEEEEc---cCCCCEEEEEeCCCcE-EEECCCCceE---------EEEecccCCcCCCcccccccccccCCCeEEE
Confidence 9999999999 64 5789999999999 9999997433 2332 345789999
Q ss_pred EecCCCCCeEEEeeCCceEEEEeCC
Q 025649 226 CTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 226 ~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+|+| +|++|++|+.||.|++||++
T Consensus 218 ~fsp-dg~~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 218 LYHP-NSLHIITIHEDNSLVFWDAN 241 (902)
T ss_dssp EECT-TSSEEEEEETTCCEEEEETT
T ss_pred EEcC-CCCEEEEEECCCeEEEEECC
Confidence 9998 89999999999999999973
No 97
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=4.4e-29 Score=197.09 Aligned_cols=221 Identities=17% Similarity=0.184 Sum_probs=167.9
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcC--CCCeEEEEecCCCeEEEEEccCCCCccceecCCCC--------CCC-
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIP--WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE--------NNG- 69 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--------~~~- 69 (250)
+|++||+++++.+..+. +|.+.|.+++|++ ++. +|++|+.||+|++||+++++........... ...
T Consensus 184 ~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
T 3v7d_B 184 TVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261 (464)
T ss_dssp CEEEEETTTTEEEEEEC-CCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTT
T ss_pred CEEEEECCCCcEEEEEC-CCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeE
Confidence 58999999999999999 9999999999984 666 8999999999999999887654332111000 000
Q ss_pred -CCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee
Q 025649 70 -NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 148 (250)
Q Consensus 70 -~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (250)
......|...+.++ ++ +++++++++.|+.|++||+++++....+..+ ...+.+++|+|+++++++ +..|
T Consensus 262 ~~~~~~~~~~~v~~~--~~------~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s-g~~d 331 (464)
T 3v7d_B 262 FVGVLRGHMASVRTV--SG------HGNIVVSGSYDNTLIVWDVAQMKCLYILSGH-TDRIYSTIYDHERKRCIS-ASMD 331 (464)
T ss_dssp EEEEECCCSSCEEEE--EE------ETTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEETTTTEEEE-EETT
T ss_pred EEEEccCccceEEEE--cC------CCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCCEEEEEEcCCCCEEEE-EeCC
Confidence 00112245556655 34 7899999999999999999998887776554 478999999999999984 3332
Q ss_pred ----eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeE
Q 025649 149 ----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 224 (250)
Q Consensus 149 ----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 224 (250)
.++....+++..+.+|...|.++.|+ + +++++++.||.|++||+++.. .. ....|...+..
T Consensus 332 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~--~~l~s~s~dg~v~vwd~~~~~---------~~-~~~~~~~~~~~ 396 (464)
T 3v7d_B 332 TTIRIWDLENGELMYTLQGHTALVGLLRLS---D--KFLVSAAADGSIRGWDANDYS---------RK-FSYHHTNLSAI 396 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEC---S--SEEEEEETTSEEEEEETTTCC---------EE-EEEECTTCCCE
T ss_pred CcEEEEECCCCcEEEEEeCCCCcEEEEEEc---C--CEEEEEeCCCcEEEEECCCCc---------ee-eeecCCCCccE
Confidence 23334456677889999999999987 3 799999999999999999863 21 22346667777
Q ss_pred EEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 225 LCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 225 ~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+++++ +++++++|+ ||.|++||++
T Consensus 397 ~~~~~-~~~~l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 397 TTFYV-SDNILVSGS-ENQFNIYNLR 420 (464)
T ss_dssp EEEEE-CSSEEEEEE-TTEEEEEETT
T ss_pred EEEEe-CCCEEEEec-CCeEEEEECC
Confidence 88887 888899888 9999999974
No 98
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.9e-29 Score=196.77 Aligned_cols=205 Identities=16% Similarity=0.105 Sum_probs=153.0
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc--CCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFS--KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
.+.|.+++|+|+++.++++|+.||.|++||+. +++.+..+... .++..|.+++|+| ++++|
T Consensus 102 ~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----------~~~~~v~~~~~sp------~~~~l 164 (450)
T 2vdu_B 102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF-----------CFSKRPNAISIAE------DDTTV 164 (450)
T ss_dssp CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE-----------ECSSCEEEEEECT------TSSEE
T ss_pred CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc-----------cCCCCceEEEEcC------CCCEE
Confidence 33799999999999334999999999999998 78877776521 1467899999999 99999
Q ss_pred EEEeCCCeEEEEeCCCceeEe----eccCCCCCCccceeeccc---ceeEEEeeeeee----ccCeeeeeecc-ccCccc
Q 025649 99 VVAKGDGVVDVINIESELNIS----RSKSTTKPLKGSQSTSKV---NIRDAEMEILDQ----SGGKRLHLDYS-VGGHTA 166 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~-~~~h~~ 166 (250)
++++.+|.|++|++.++.... .+. .+...+.+++|+|+ ++++++ +..|. ++....+.+.. +.+|..
T Consensus 165 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 165 IIADKFGDVYSIDINSIPEEKFTQEPIL-GHVSMLTDVHLIKDSDGHQFIIT-SDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEETTSEEEEEETTSCCCSSCCCCCSE-ECSSCEEEEEEEECTTSCEEEEE-EETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEeCCCcEEEEecCCcccccccceeee-cccCceEEEEEcCCCCCCcEEEE-EcCCCcEEEEECCCCceeeeeecCCCC
Confidence 999999999999998866442 222 23478999999999 888884 32222 12222233344 568999
Q ss_pred cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccccee----------------eeeeccCCceeEEEecCC
Q 025649 167 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL----------------IKNINLNKKVNWLCTTPT 230 (250)
Q Consensus 167 ~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~ 230 (250)
.|.+++|+ ++++|++++.|+.|++||++++............ .........|..++|+|
T Consensus 243 ~v~~~~~s----d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~- 317 (450)
T 2vdu_B 243 FVSSICCG----KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK- 317 (450)
T ss_dssp CEEEEEEC----STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-
T ss_pred ceEEEEEC----CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-
Confidence 99999997 6899999999999999999998544221100000 00002345688999998
Q ss_pred CCCeEEEee-CCceEEEEeC
Q 025649 231 ESENLVVCD-TSKVVKVYSI 249 (250)
Q Consensus 231 ~~~~l~s~~-~d~~i~vw~~ 249 (250)
++++|++++ .|+.|++|++
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEe
Confidence 888999888 8999999997
No 99
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3e-29 Score=190.31 Aligned_cols=208 Identities=11% Similarity=0.093 Sum_probs=158.6
Q ss_pred eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC----ccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649 14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP----NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 89 (250)
Q Consensus 14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (250)
..+. +|.+.|++++|+|+++ +|++|+.||.|++||+.++.. ...+. + |...|.+++|+|
T Consensus 5 ~~~~-gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~------------~~~~v~~~~~~~-- 67 (351)
T 3f3f_A 5 PFDS-GHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWR-A------------HDSSIVAIDWAS-- 67 (351)
T ss_dssp CEEC-CCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEE-C------------CSSCEEEEEECC--
T ss_pred ccCc-ccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceecceec-c------------CCCcEEEEEEcC--
Confidence 3456 9999999999999999 899999999999999987643 22333 2 678999999998
Q ss_pred ccCC-CCCEEEEEeCCCeEEEEeCCCce---------eEeeccCCCCCCccceeeccc--ceeEEE------eeeeeecc
Q 025649 90 MLDK-TNKICVVAKGDGVVDVINIESEL---------NISRSKSTTKPLKGSQSTSKV--NIRDAE------MEILDQSG 151 (250)
Q Consensus 90 ~~~~-~~~~l~~~~~d~~i~~~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~ 151 (250)
. ++++|++++.||.|++||++.+. ...... .+...+.+++|+|+ +.++++ +..|+...
T Consensus 68 ---~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 68 ---PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp ---GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred ---CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 2 48999999999999999998863 233333 34578999999999 888884 22344332
Q ss_pred Ceeee------ee----ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc
Q 025649 152 GKRLH------LD----YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 221 (250)
Q Consensus 152 ~~~~~------~~----~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (250)
..... .. ....+|...+.+++|+|...++.++++++.|+.+.+|+...+.. ..+..+.+|...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~h~~~ 216 (351)
T 3f3f_A 144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL-------HVAAKLPGHKSL 216 (351)
T ss_dssp TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE-------EEEEECCCCCSC
T ss_pred hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce-------eeeeecCCCCcc
Confidence 21110 00 11126788999999993211389999999999998888777532 235667789999
Q ss_pred eeEEEecCCCC----CeEEEeeCCceEEEEeCC
Q 025649 222 VNWLCTTPTES----ENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 222 v~~~~~~~~~~----~~l~s~~~d~~i~vw~~~ 250 (250)
|.+++|+| ++ ++|++|+.||.|++||++
T Consensus 217 i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 217 IRSISWAP-SIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp EEEEEECC-CSSCSSEEEEEEETTSCEEEEEEE
T ss_pred eeEEEECC-CCCCcceEEEEEcCCCeEEEEeCC
Confidence 99999998 65 789999999999999963
No 100
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.7e-29 Score=196.53 Aligned_cols=202 Identities=15% Similarity=0.210 Sum_probs=157.3
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC----------CCCccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK----------GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA 88 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 88 (250)
+|.+.|++++|+|++..+|++++.||.|++||+.+ .+.+..+. .|...+.+++|+|
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-------------~h~~~v~~l~~~~- 191 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-------------GHQKEGYGLSWNP- 191 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-------------CCSSCCCCEEECT-
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-------------CCCCCeEEEEeCC-
Confidence 79999999999998544899999999999999986 33333333 2678899999998
Q ss_pred cccCCCCC-EEEEEeCCCeEEEEeCCCceeE------eeccCCCCCCccceeecc-cceeEEE------eeeeeeccCee
Q 025649 89 DMLDKTNK-ICVVAKGDGVVDVINIESELNI------SRSKSTTKPLKGSQSTSK-VNIRDAE------MEILDQSGGKR 154 (250)
Q Consensus 89 ~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~ 154 (250)
++. +|++|+.||.|++||+..+... ......+...+.+++|+| ++..+++ +..|+......
T Consensus 192 -----~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 192 -----NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp -----TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred -----CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 777 9999999999999999873221 122224457899999999 4556653 22344443332
Q ss_pred eeeeccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC
Q 025649 155 LHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 233 (250)
Q Consensus 155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 233 (250)
.+.+..+..|...|.+++|+ |+++ ++++|+.||.|++||++... ..+..+..|...|.+++|+|.+..
T Consensus 267 ~~~~~~~~~~~~~v~~i~~~---p~~~~~l~tg~~dg~v~vwd~~~~~--------~~~~~~~~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 267 SKPSHTVDAHTAEVNCLSFN---PYSEFILATGSADKTVALWDLRNLK--------LKLHSFESHKDEIFQVQWSPHNET 335 (430)
T ss_dssp SSCSEEEECCSSCEEEEEEC---SSCTTEEEEEETTSEEEEEETTCTT--------SCSEEEECCSSCEEEEEECSSCTT
T ss_pred CcceeEeecCCCCeEEEEeC---CCCCCEEEEEeCCCeEEEEeCCCCC--------CCeEEeecCCCCEEEEEECCCCCC
Confidence 34556677899999999999 7776 78999999999999999842 455677789999999999984445
Q ss_pred eEEEeeCCceEEEEeCC
Q 025649 234 NLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 234 ~l~s~~~d~~i~vw~~~ 250 (250)
+|++++.|+.|++||++
T Consensus 336 ~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 336 ILASSGTDRRLHVWDLS 352 (430)
T ss_dssp EEEEEETTSCCEEEEGG
T ss_pred EEEEEeCCCcEEEEeCC
Confidence 79999999999999973
No 101
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.7e-29 Score=192.18 Aligned_cols=210 Identities=11% Similarity=0.045 Sum_probs=155.4
Q ss_pred EEcccceeeeeeccCCCCCeeeEEEcCC---CCeEEEEecCCCeEEEEEccC-CCCc-cceecCCCCCCCCCCcccCCCc
Q 025649 5 IDIRQHCLYKSLRAGHSSICSSVQFIPW---KPWEVISGGLDSKLVMWDFSK-GRPN-KIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 5 wd~~~~~~~~~l~~~h~~~v~~l~~~~~---~~~~l~s~s~dg~v~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
|+....+.+..++ +|.+.|++++|+|+ ++ +|++|+.||.|++||+.+ ++.+ ..+. + |...
T Consensus 24 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~------------h~~~ 88 (368)
T 3mmy_A 24 DNHNPMKDIEVTS-SPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPKAQQ-M------------HTGP 88 (368)
T ss_dssp CSSCTTCCEECSS-CCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEEEEE-E------------CSSC
T ss_pred CCCCCcceeEecc-CCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEEEec-c------------ccCC
Confidence 3444566777888 99999999999999 46 899999999999999987 4444 3333 3 5789
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceee--cccceeEEEe------eeeeecc
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST--SKVNIRDAEM------EILDQSG 151 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~ 151 (250)
|.+++|+| ++++|++++.||.|++||+++++...... +...+.++.| +|++.++++. ..|+...
T Consensus 89 v~~~~~~~------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 89 VLDVCWSD------DGSKVFTASCDKTAKMWDLSSNQAIQIAQ--HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160 (368)
T ss_dssp EEEEEECT------TSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred EEEEEECc------CCCEEEEEcCCCcEEEEEcCCCCceeecc--ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence 99999999 99999999999999999999988766433 4478999999 8999988842 2233322
Q ss_pred CeeeeeeccccC-----------------------------------------ccccEEEEEeecCCCCCc----EEEEe
Q 025649 152 GKRLHLDYSVGG-----------------------------------------HTAAASCVAFSMFGERGK----YLISG 186 (250)
Q Consensus 152 ~~~~~~~~~~~~-----------------------------------------h~~~v~~~~~~p~~~~~~----~l~s~ 186 (250)
. +.+..+.. +...+.++.+. ++.. .++++
T Consensus 161 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 161 S---NPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF---KDKQNKPTGFALG 234 (368)
T ss_dssp S---SCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEE---ECTTSCEEEEEEE
T ss_pred C---cEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEc---ccCCCCCCeEEEe
Confidence 1 11111111 22334455554 2322 39999
Q ss_pred eCCCeEEEEecCCCcceecccccceeeeeeccCC------------ceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 187 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK------------KVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 187 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+.||.|++||++..... .....+..|.. .|.+++|+| ++++|++++.||.|++||++
T Consensus 235 ~~dg~i~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 235 SIEGRVAIHYINPPNPA------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp ETTSEEEEEESSCSCHH------HHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETT
T ss_pred cCCCcEEEEecCCCCcc------ccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECC
Confidence 99999999999886331 22234444544 799999998 88999999999999999974
No 102
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.9e-30 Score=212.42 Aligned_cols=208 Identities=11% Similarity=0.110 Sum_probs=160.9
Q ss_pred eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC--CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649 13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK--GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM 90 (250)
Q Consensus 13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (250)
+..+. +|.+.|++++|+|+++ +|++|+.||+|++||+.+ ++.+..+. + |...|.+++|+|
T Consensus 2 ~~~l~-gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~~~l~-~------------h~~~V~~l~~s~--- 63 (753)
T 3jro_A 2 VVIAN-AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLT-G------------HEGPVWRVDWAH--- 63 (753)
T ss_dssp -------CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEEEEEC-C------------CSSCEEEEEECC---
T ss_pred eeecc-cCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccceecc-C------------CcCceEEEEecC---
Confidence 34567 9999999999999999 899999999999999984 34444444 2 678999999998
Q ss_pred cCCC--CCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeeccc--ceeEEEe------eeeeeccCeeeeeec
Q 025649 91 LDKT--NKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKV--NIRDAEM------EILDQSGGKRLHLDY 159 (250)
Q Consensus 91 ~~~~--~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~ 159 (250)
+ +++|++|+.||.|++||+.++... ......+...+.+++|+|+ +..+++. ..|+..... .....
T Consensus 64 ---~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~-~~~~~ 139 (753)
T 3jro_A 64 ---PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-TTSPI 139 (753)
T ss_dssp ---TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS-CCCCE
T ss_pred ---CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC-Cccee
Confidence 5 899999999999999999987632 2222334578999999999 8888842 223332221 12234
Q ss_pred cccCccccEEEEEeecCCC-------------CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649 160 SVGGHTAAASCVAFSMFGE-------------RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 226 (250)
Q Consensus 160 ~~~~h~~~v~~~~~~p~~~-------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 226 (250)
.+.+|...|.+++|+ | +++++++|+.||.|++||++++.... .+...+.+|...|.+++
T Consensus 140 ~~~~~~~~v~~l~~~---p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~-----~~~~~~~~h~~~V~~l~ 211 (753)
T 3jro_A 140 IIDAHAIGVNSASWA---PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----VLESTLEGHSDWVRDVA 211 (753)
T ss_dssp EEECCSSCEEEEEEC---CCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE-----EEEEEECCCSSCEEEEE
T ss_pred EeecCCCceEEEEec---CcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc-----eeeeeecCCCCcEEEEE
Confidence 567899999999999 5 58999999999999999998864321 34456778999999999
Q ss_pred ecCCC--CCeEEEeeCCceEEEEeCC
Q 025649 227 TTPTE--SENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 227 ~~~~~--~~~l~s~~~d~~i~vw~~~ 250 (250)
|+|.+ +.+|++|+.||.|++||++
T Consensus 212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 212 WSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred eccCCCCCCEEEEEecCCEEEEecCC
Confidence 99833 8899999999999999963
No 103
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=9e-30 Score=222.20 Aligned_cols=219 Identities=19% Similarity=0.229 Sum_probs=177.1
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+.+++....+. +|...|.+++|+|+++ +|++++.||.|++||+.+++...... +...+
T Consensus 984 ~i~i~d~~~~~~~~~~~-~h~~~v~~l~~s~dg~-~l~s~~~dg~i~vwd~~~~~~~~~~~--------------~~~~v 1047 (1249)
T 3sfz_A 984 AIKIIELPNNRVFSSGV-GHKKAVRHIQFTADGK-TLISSSEDSVIQVWNWQTGDYVFLQA--------------HQETV 1047 (1249)
T ss_dssp CCEEEETTTTSCEEECC-CCSSCCCCEEECSSSS-CEEEECSSSBEEEEETTTTEEECCBC--------------CSSCE
T ss_pred CEEEEEcCCCceeeecc-cCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCceEEEec--------------CCCcE
Confidence 47899999999999999 9999999999999999 89999999999999999887654332 57889
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLH 156 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 156 (250)
.++.++| + ..+++++.|+.|++||+.+++....+..+ ...+.+++|+|+++.+++ +..+. ++....+
T Consensus 1048 ~~~~~~~------~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~s-~s~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A 1048 KDFRLLQ------D-SRLLSWSFDGTVKVWNVITGRIERDFTCH-QGTVLSCAISSDATKFSS-TSADKTAKIWSFDLLS 1118 (1249)
T ss_dssp EEEEECS------S-SEEEEEESSSEEEEEETTTTCCCEEEECC-SSCCCCEEECSSSSSCEE-ECCSSCCCEECSSSSS
T ss_pred EEEEEcC------C-CcEEEEECCCcEEEEECCCCceeEEEccc-CCcEEEEEECCCCCEEEE-EcCCCcEEEEECCCcc
Confidence 9999997 4 46788999999999999998877666544 477999999999999984 33333 3334455
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
++..+.+|...|++++|+ |+|++|++|+.||.|++||+.++.................|...|.+++|+| ++++++
T Consensus 1119 ~~~~l~~h~~~v~~~~~s---~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~ 1194 (1249)
T 3sfz_A 1119 PLHELKGHNGCVRCSAFS---LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLV 1194 (1249)
T ss_dssp CSBCCCCCSSCEEEEEEC---SSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECT-TSSCEE
T ss_pred eeeeeccCCCcEEEEEEC---CCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECC-CCCEEE
Confidence 677888999999999999 8999999999999999999999854432211122223367899999999998 899998
Q ss_pred EeeCCceEEEEeCC
Q 025649 237 VCDTSKVVKVYSIS 250 (250)
Q Consensus 237 s~~~d~~i~vw~~~ 250 (250)
+++ |.|++||+.
T Consensus 1195 s~~--g~v~vwd~~ 1206 (1249)
T 3sfz_A 1195 SAG--GYLKWWNVA 1206 (1249)
T ss_dssp EES--SSEEEBCSS
T ss_pred ECC--CeEEEEECC
Confidence 886 899999963
No 104
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=5e-29 Score=209.13 Aligned_cols=216 Identities=16% Similarity=0.172 Sum_probs=177.6
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+|++||+.+++.+..+. +|.+.|.+++|+|+++ +|++++.||.|++||++++ .....+. + |...
T Consensus 78 ~i~vw~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~-~------------~~~~ 142 (814)
T 3mkq_A 78 RIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFE-G------------HEHF 142 (814)
T ss_dssp EEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEE-C------------CSSC
T ss_pred eEEEEECCCCcEEEEEe-cCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEc-C------------CCCc
Confidence 47999999999999999 9999999999999999 8999999999999999887 3344443 3 5778
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc--cceeEEEee---eeeeccCee
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK--VNIRDAEME---ILDQSGGKR 154 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~ 154 (250)
|.+++|+| .+++.+++++.||.|++||+.++.............+..++|+| ++.++++.+ ....++...
T Consensus 143 v~~~~~~p-----~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 143 VMCVAFNP-----KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp EEEEEEET-----TEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred EEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 99999997 46789999999999999999988777776666668899999999 888888421 222233334
Q ss_pred eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC-
Q 025649 155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE- 233 (250)
Q Consensus 155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 233 (250)
.+.+..+.+|...|.+++|+ |+++++++++.||.|++||+.++ ........|...+.+++|+| ++.
T Consensus 218 ~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~-~~~~ 284 (814)
T 3mkq_A 218 KSCVATLEGHMSNVSFAVFH---PTLPIIISGSEDGTLKIWNSSTY---------KVEKTLNVGLERSWCIATHP-TGRK 284 (814)
T ss_dssp TEEEEEEECCSSCEEEEEEC---SSSSEEEEEETTSCEEEEETTTC---------SEEEEECCSSSSEEEEEECT-TCGG
T ss_pred CcEEEEEcCCCCCEEEEEEc---CCCCEEEEEeCCCeEEEEECCCC---------cEEEEeecCCCcEEEEEEcc-CCCc
Confidence 45566788899999999999 89999999999999999999987 56667788889999999998 554
Q ss_pred eEEEeeCCceEEEEeC
Q 025649 234 NLVVCDTSKVVKVYSI 249 (250)
Q Consensus 234 ~l~s~~~d~~i~vw~~ 249 (250)
.+++++.++.+.+|++
T Consensus 285 ~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 285 NYIASGFDNGFTVLSL 300 (814)
T ss_dssp GEEEEEETTEEEEEEC
T ss_pred eEEEEEeCCCEEEEEc
Confidence 3344455677888875
No 105
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-29 Score=198.14 Aligned_cols=212 Identities=10% Similarity=0.002 Sum_probs=154.8
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
++.|++.+++....+..+|...|.+++|||+|+ +||+++.||+|++||.+. ++..+. +. .......++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~-~~--------~~~~~~sv~ 133 (588)
T 2j04_A 66 ENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLD-SK--------GNLSSRTYH 133 (588)
T ss_dssp CCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECC-CS--------SCSTTTCEE
T ss_pred cceEEEEeCCCceEeecCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeecc-CC--------CccccccEE
Confidence 345666655543333324688999999999999 899999999999999644 333333 20 000123699
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee-------Eeecc---CCCCCCccceeecccceeEEE-----eee
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN-------ISRSK---STTKPLKGSQSTSKVNIRDAE-----MEI 146 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~ 146 (250)
+++|+| +|++|++|+.||+|++||+.++.. ...+. ..+...+.+++|+|+| .++. +..
T Consensus 134 svafSP------DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrl 206 (588)
T 2j04_A 134 CFEWNP------IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFS 206 (588)
T ss_dssp EEEECS------SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEE
T ss_pred EEEEcC------CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEE
Confidence 999999 999999999999999999998753 33332 3345799999999999 4332 223
Q ss_pred eeeccCeeeeeeccc-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649 147 LDQSGGKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 225 (250)
Q Consensus 147 ~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (250)
|+.......+...++ .+|...|.+++|+ |+.+++++ ++.|++||+.++ .......+|...+..+
T Consensus 207 Wd~~~~~~~~~~~tL~~~h~~~V~svaFs-----g~~LASa~-~~tIkLWd~~~~---------~~~~~~~gh~~~V~~v 271 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQNASRRKITDLKIV-----DYKVVLTC-PGYVHKIDLKNY---------SISSLKTGSLENFHII 271 (588)
T ss_dssp ECCCSSSSCCCEEEEECCCSSCCCCEEEE-----TTEEEEEC-SSEEEEEETTTT---------EEEEEECSCCSCCCEE
T ss_pred EECCCCccccceeeecccccCcEEEEEEE-----CCEEEEEe-CCeEEEEECCCC---------eEEEEEcCCCceEEEE
Confidence 333222211122345 4788899999997 47889887 699999999986 3423344899999999
Q ss_pred Ee--cCCCCCeEEEeeCCceEEEEeC
Q 025649 226 CT--TPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 226 ~~--~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
++ +| +++.+++++.||+ ++|.+
T Consensus 272 a~~~s~-d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 272 PLNHEK-ESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EETTCS-SCEEEEECSSCEE-EEEES
T ss_pred EeeeCC-CCCEEEEEcCCCC-EEEee
Confidence 99 87 8889999999999 99986
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=6.2e-29 Score=194.78 Aligned_cols=214 Identities=17% Similarity=0.198 Sum_probs=167.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccc--eecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI--VNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 78 (250)
+|++||+.+++.+..+. +|...|.+++|+++ +|++|+.||.|++||+++++.... ...+ |..
T Consensus 194 ~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------------~~~ 257 (435)
T 1p22_A 194 TVRVWDVNTGEMLNTLI-HHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVG------------HRA 257 (435)
T ss_dssp CEEEEESSSCCEEEEEC-CCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECC------------CSS
T ss_pred eEEEEECCCCcEEEEEc-CCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecC------------CCC
Confidence 58999999999999999 99999999999753 899999999999999998776532 1112 567
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKR 154 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 154 (250)
.|.++++ +++++++|+.||.|++||+++++....+..+ ...+.++.+ ++.++++ +..+ .++...
T Consensus 258 ~v~~~~~--------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~~-g~~dg~i~iwd~~~ 325 (435)
T 1p22_A 258 AVNVVDF--------DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQY--RDRLVVS-GSSDNTIRLWDIEC 325 (435)
T ss_dssp CEEEEEE--------ETTEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEE--ETTEEEE-EETTSCEEEEETTT
T ss_pred cEEEEEe--------CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC-CCcEEEEEe--CCCEEEE-EeCCCeEEEEECCC
Confidence 8888887 4789999999999999999998887776654 366777877 4566663 3322 233344
Q ss_pred eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649 155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 234 (250)
.+++..+.+|...|.+++|. +++|++|+.||.|++||++++...........+..+.+|...|.+++| ++.+
T Consensus 326 ~~~~~~~~~h~~~v~~~~~~-----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~ 397 (435)
T 1p22_A 326 GACLRVLEGHEELVRCIRFD-----NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQ 397 (435)
T ss_dssp CCEEEEECCCSSCEEEEECC-----SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---CSSC
T ss_pred CCEEEEEeCCcCcEEEEEec-----CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe---CCCE
Confidence 55677888999999999874 579999999999999999876322111111256677899999999998 5678
Q ss_pred EEEeeCCceEEEEeCC
Q 025649 235 LVVCDTSKVVKVYSIS 250 (250)
Q Consensus 235 l~s~~~d~~i~vw~~~ 250 (250)
|++|+.||.|++||+.
T Consensus 398 l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 398 IVSSSHDDTILIWDFL 413 (435)
T ss_dssp EEECCSSSEEEEEC--
T ss_pred EEEEeCCCEEEEEECC
Confidence 9999999999999973
No 107
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=4.6e-29 Score=203.14 Aligned_cols=226 Identities=12% Similarity=0.071 Sum_probs=159.1
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCC---------------------------------CCeEEEEecCCCeEE
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPW---------------------------------KPWEVISGGLDSKLV 47 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~---------------------------------~~~~l~s~s~dg~v~ 47 (250)
+|++||+.+++.+..+. +|...|.+++| |+ +. .|++++.|+.|+
T Consensus 320 ~i~~~d~~~~~~~~~~~-~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~ 396 (615)
T 1pgu_A 320 TLNFYELGHDEVLKTIS-GHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLK 396 (615)
T ss_dssp CEEEEETTEEEEEEEEC-CCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETTTEEE
T ss_pred CEEEEECCCCcEEEEEe-CCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc-EEEEEeCCCCEE
Confidence 47889998888888887 77777777776 54 44 456666666666
Q ss_pred EEEccCCCCcc---ceecCCCC-----------------CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC-CCe
Q 025649 48 MWDFSKGRPNK---IVNFGLPE-----------------NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGV 106 (250)
Q Consensus 48 iwd~~~~~~~~---~~~~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-d~~ 106 (250)
+||+.+++... .+...... .........+...+.+++++ ++++++++. |+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~d~~ 468 (615)
T 1pgu_A 397 VNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--------QNYVAVGLEEGNT 468 (615)
T ss_dssp ETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--------SSEEEEEETTTSC
T ss_pred EEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--------CCEEEEeecCCCe
Confidence 66654332100 00000000 00000000133445555554 678999999 999
Q ss_pred EEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeeeccccC-ccccEEEEEeecCCC----
Q 025649 107 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGE---- 178 (250)
Q Consensus 107 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~---- 178 (250)
|++||+.+++........+...+.+++|+|+++++++.+ ....++....+.+..+.+ |...|++++|+ |
T Consensus 469 i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~s---p~~~~ 545 (615)
T 1pgu_A 469 IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK---PAEKG 545 (615)
T ss_dssp EEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC---CCC--
T ss_pred EEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEc---Ccccc
Confidence 999999987665333334457899999999999999421 122233444555667777 99999999999 8
Q ss_pred ------CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 179 ------RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 179 ------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
++++|++++.||.|++||+.++. .++..+.+|...|.+++|+| +++ |++++.||.|++|+++
T Consensus 546 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 546 ANEEEIEEDLVATGSLDTNIFIYSVKRPM--------KIIKALNAHKDGVNNLLWET-PST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp ----CCSCCEEEEEETTSCEEEEESSCTT--------CCEEETTSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEEEC
T ss_pred ccccccCCCEEEEEcCCCcEEEEECCCCc--------eechhhhcCccceEEEEEcC-CCC-eEEecCCceEEEEeee
Confidence 99999999999999999999863 34556788999999999998 888 9999999999999974
No 108
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-28 Score=206.60 Aligned_cols=214 Identities=10% Similarity=0.036 Sum_probs=160.5
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|+|||..+.+....+. |..+|.+++|+| ++ +|++++.|++|++||+++++.+..+. +...|
T Consensus 40 ~I~lw~~~~~~~~~~~~--~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~~~--------------~~~~V 101 (902)
T 2oaj_A 40 EVHIYGQQQVEVVIKLE--DRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTTVF--------------VPGKI 101 (902)
T ss_dssp EEEEECSTTCEEEEECS--SCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEEEE--------------CSSCE
T ss_pred EEEEEeCCCcEEEEEcC--CCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEEEc--------------CCCCE
Confidence 48999998887766654 889999999999 87 89999999999999999998887775 45789
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe----------eccCCCCCCccceeecccc-eeEEEee----
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS----------RSKSTTKPLKGSQSTSKVN-IRDAEME---- 145 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~---- 145 (250)
++++|+| ++++|++|+.||.|++||+++++... .....+...+.+++|+|++ ..+++ +
T Consensus 102 ~~v~~sp------~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~-g~~dg 174 (902)
T 2oaj_A 102 TSIDTDA------SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI-SYEYV 174 (902)
T ss_dssp EEEECCT------TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE-ECSSC
T ss_pred EEEEECC------CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE-EeCCC
Confidence 9999999 99999999999999999999877531 1112345789999999964 55553 2
Q ss_pred --eeeeccCeeeeeeccccC------------------ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec
Q 025649 146 --ILDQSGGKRLHLDYSVGG------------------HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205 (250)
Q Consensus 146 --~~~~~~~~~~~~~~~~~~------------------h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 205 (250)
.||.... +.+..+.. |...|.+++|+ |+|++|++|+.||.|++||+++++....
T Consensus 175 ~vlWd~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs---pdg~~lasgs~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 175 TLTYSLVEN---EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH---PNSLHIITIHEDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp EEEEETTTT---EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC---TTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred cEEEECCCC---ceEEEEecccCCcCCCcccccccccccCCCeEEEEEc---CCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence 3443332 33333333 46789999999 8999999999999999999998743321
Q ss_pred ccccceeeeee-------------ccCCceeEEEecCC---C-CCeEEEeeCC-----ceEEEEeC
Q 025649 206 SINNDLLIKNI-------------NLNKKVNWLCTTPT---E-SENLVVCDTS-----KVVKVYSI 249 (250)
Q Consensus 206 ~~~~~~~~~~~-------------~~~~~v~~~~~~~~---~-~~~l~s~~~d-----~~i~vw~~ 249 (250)
. .+.... .|...|++++|++. + +.++++|+.| ..+++|++
T Consensus 249 r----~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 249 R----TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp E----CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred E----eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 0 000001 24557999999642 3 3567778765 37888873
No 109
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.5e-28 Score=181.55 Aligned_cols=203 Identities=16% Similarity=0.195 Sum_probs=150.9
Q ss_pred ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649 10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 89 (250)
Q Consensus 10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (250)
.+....+. +|.+.|.+++| |+++ +|++|+.||.|++||+.+++....+.. |...|.+++|+|
T Consensus 8 ~~~~~~l~-~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~-------------~~~~v~~~~~~~-- 69 (313)
T 3odt_A 8 YQLSATLK-GHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTVVYT-------------GQGFLNSVCYDS-- 69 (313)
T ss_dssp CEEEEEEC-CCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEEEEE-------------CSSCEEEEEEET--
T ss_pred HHHHHHhh-CCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEEeec-------------CCccEEEEEECC--
Confidence 37788899 99999999999 8898 899999999999999988776666653 467899999998
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeCCCce---eEeeccCC-------------------------------------CCCCc
Q 025649 90 MLDKTNKICVVAKGDGVVDVINIESEL---NISRSKST-------------------------------------TKPLK 129 (250)
Q Consensus 90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~-------------------------------------~~~~~ 129 (250)
++++|++++.|+.|++|++.... .......+ +...+
T Consensus 70 ----~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v 145 (313)
T 3odt_A 70 ----EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASV 145 (313)
T ss_dssp ----TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCE
T ss_pred ----CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCce
Confidence 88888888888888888876532 11111111 12334
Q ss_pred cceeecc-cceeEEEeeeeeecc--CeeeeeeccccC-ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec
Q 025649 130 GSQSTSK-VNIRDAEMEILDQSG--GKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205 (250)
Q Consensus 130 ~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 205 (250)
.++.+.| ++..+++ +..+... ....+....+.. |...+.+++|+ |++. +++++.||.|++||++++
T Consensus 146 ~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~---~~~~-~~~~~~dg~i~i~d~~~~----- 215 (313)
T 3odt_A 146 WDAKVVSFSENKFLT-ASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVV---DDGH-FISCSNDGLIKLVDMHTG----- 215 (313)
T ss_dssp EEEEEEETTTTEEEE-EETTSCEEEEETTEEEEEECSSCSSCEEEEEEE---ETTE-EEEEETTSEEEEEETTTC-----
T ss_pred eEEEEccCCCCEEEE-EECCCCEEEEecCceEEEEeccCcccEEEEEEc---CCCe-EEEccCCCeEEEEECCch-----
Confidence 4444444 4444442 1111110 001223344555 88899999999 7877 999999999999999987
Q ss_pred ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 206 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
+.+..+..|...|.+++|+| ++ .|++++.||.|++||++
T Consensus 216 ----~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 216 ----DVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKE 254 (313)
T ss_dssp ----CEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTT
T ss_pred ----hhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECC
Confidence 66677788999999999998 66 59999999999999974
No 110
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=6.5e-29 Score=190.28 Aligned_cols=223 Identities=9% Similarity=0.022 Sum_probs=159.1
Q ss_pred cEEEEccccee----------eeeeccCCCCCeeeEEEcCCCCeEEEE-----------ecCCCeEEEEEccCCCCccce
Q 025649 2 WQIIDIRQHCL----------YKSLRAGHSSICSSVQFIPWKPWEVIS-----------GGLDSKLVMWDFSKGRPNKIV 60 (250)
Q Consensus 2 i~iwd~~~~~~----------~~~l~~~h~~~v~~l~~~~~~~~~l~s-----------~s~dg~v~iwd~~~~~~~~~~ 60 (250)
|++|++..+.. ...|. +|...|.+++++++ .+++ ++.|+.+++|++.+......+
T Consensus 45 i~~w~~~~~~~~~~~~~~~~~~~~l~-~~~~~v~s~~~~~~---~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~ 120 (365)
T 4h5i_A 45 LTVLRVDPTKDTEKEQFHILSEFALE-DNDDSPTAIDASKG---IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEF 120 (365)
T ss_dssp EEEEEECTTSSSHHHHEEEEEEEECC-TTSCCCCEEEEETT---EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEE
T ss_pred EEEEEEcCCCcceeeeeeeeeEEEcc-CCCCceEEEEeCCC---EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEE
Confidence 78999875432 12466 88899999887654 4554 456788999998765432221
Q ss_pred ecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE--eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc
Q 025649 61 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA--KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 138 (250)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (250)
.... .......+...+.+++|+| ||++++++ +.|++|++||+++++....+.. ...+.+++|+|+|
T Consensus 121 ~~~~----~~~~~~~~~~~~~~v~fSp------Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~--~~~V~~v~fspdg 188 (365)
T 4h5i_A 121 LTSV----DFDASTNADDYTKLVYISR------EGTVAAIASSKVPAIMRIIDPSDLTEKFEIET--RGEVKDLHFSTDG 188 (365)
T ss_dssp EEEE----CSSCCCCTTCCEEEEEECT------TSSCEEEEESCSSCEEEEEETTTTEEEEEEEC--SSCCCEEEECTTS
T ss_pred eeee----ceeecCCcccCEEEEEEcC------CCCEEEEEECCCCCEEEEeECCCCcEEEEeCC--CCceEEEEEccCC
Confidence 1000 0001111345688999999 99988654 4789999999999988877654 3679999999999
Q ss_pred eeEEEee-----eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC----eEEEEecCCCcceeccccc
Q 025649 139 IRDAEME-----ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK----LVKVWDCSRFQGVQTSINN 209 (250)
Q Consensus 139 ~~~~~~~-----~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~ 209 (250)
+++++.. .++..... ........+|...|.+++|+ |+++++++++.|+ .+++||+.......
T Consensus 189 ~~l~s~s~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~fs---pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~----- 259 (365)
T 4h5i_A 189 KVVAYITGSSLEVISTVTGS-CIARKTDFDKNWSLSKINFI---ADDTVLIAASLKKGKGIVLTKISIKSGNTSV----- 259 (365)
T ss_dssp SEEEEECSSCEEEEETTTCC-EEEEECCCCTTEEEEEEEEE---ETTEEEEEEEESSSCCEEEEEEEEETTEEEE-----
T ss_pred ceEEeccceeEEEEEeccCc-ceeeeecCCCCCCEEEEEEc---CCCCEEEEEecCCcceeEEeecccccceecc-----
Confidence 9998532 11111111 11223456788999999999 8999999999887 68889987753221
Q ss_pred ceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 210 DLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.....+.+|...|++++|+| ||++|++|+.|+.|+|||++
T Consensus 260 ~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~ 299 (365)
T 4h5i_A 260 LRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLK 299 (365)
T ss_dssp EEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETT
T ss_pred eeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECC
Confidence 22345678999999999998 99999999999999999974
No 111
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=9.5e-29 Score=187.60 Aligned_cols=202 Identities=11% Similarity=0.093 Sum_probs=162.0
Q ss_pred CcEEEEc-ccceeeeeeccC--CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC---------CCCccceecCCCCCC
Q 025649 1 MWQIIDI-RQHCLYKSLRAG--HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK---------GRPNKIVNFGLPENN 68 (250)
Q Consensus 1 ti~iwd~-~~~~~~~~l~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~---------~~~~~~~~~~~~~~~ 68 (250)
+|++||+ .+++. ..+. + |...|.+++|+| +. +|++++.|+.|++||+++ ++++..+.
T Consensus 80 ~i~~wd~~~~~~~-~~~~-~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------- 148 (342)
T 1yfq_A 80 EILKVDLIGSPSF-QALT-NNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK------- 148 (342)
T ss_dssp CEEEECSSSSSSE-EECB-SCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-------
T ss_pred eEEEEEeccCCce-Eecc-ccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEe-------
Confidence 5899999 87765 6777 8 999999999999 77 899999999999999987 66666555
Q ss_pred CCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC-cee-EeeccCCCCCCccceeecc-cceeEEEee
Q 025649 69 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELN-ISRSKSTTKPLKGSQSTSK-VNIRDAEME 145 (250)
Q Consensus 69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 145 (250)
+...+.+++|+| ++ +++++.|+.|++||+++ +.. ...........+.+++|+| +++++++.+
T Consensus 149 -------~~~~v~~~~~~~------~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 149 -------VKNKIFTMDTNS------SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp -------SCCCEEEEEECS------SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred -------eCCceEEEEecC------Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence 467899999998 55 99999999999999998 543 2333344557899999999 999888422
Q ss_pred ------eeeeccC---eeeeeeccccCccc---------cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccc
Q 025649 146 ------ILDQSGG---KRLHLDYSVGGHTA---------AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI 207 (250)
Q Consensus 146 ------~~~~~~~---~~~~~~~~~~~h~~---------~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 207 (250)
.|+.... ...+....+.+|.. .|.+++|+ |++++|++++.||.|++||++++
T Consensus 214 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg~i~vwd~~~~------- 283 (342)
T 1yfq_A 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS---PRHKFLYTAGSDGIISCWNLQTR------- 283 (342)
T ss_dssp TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC---TTTCCEEEEETTSCEEEEETTTT-------
T ss_pred cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc---CCCCEEEEecCCceEEEEcCccH-------
Confidence 2222221 00134455666654 99999999 89999999999999999999987
Q ss_pred ccceeeeeecc-CCceeEEEecCCCCCeEEEeeCCce
Q 025649 208 NNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTSKV 243 (250)
Q Consensus 208 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~ 243 (250)
+.+..+.+| ...|.+++ | ++++|++++.||.
T Consensus 284 --~~~~~~~~~h~~~v~~~~--~-~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 284 --KKIKNFAKFNEDSVVKIA--C-SDNILCLATSDDT 315 (342)
T ss_dssp --EEEEECCCCSSSEEEEEE--E-CSSEEEEEEECTH
T ss_pred --hHhhhhhcccCCCceEec--C-CCCeEEEEecCCc
Confidence 566677888 99999998 5 8999999999998
No 112
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=3.7e-28 Score=190.93 Aligned_cols=204 Identities=19% Similarity=0.216 Sum_probs=169.2
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+.+++.+..+. +|...|.+++|+ +. +|++|+.||+|++||+.+++.+..+. + |...|
T Consensus 140 ~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~-~------------h~~~v 202 (445)
T 2ovr_B 140 TLKVWSAVTGKCLRTLV-GHTGGVWSSQMR--DN-IIISGSTDRTLKVWNAETGECIHTLY-G------------HTSTV 202 (445)
T ss_dssp CEEEEETTTCCEEEECC-CCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEEC-C------------CSSCE
T ss_pred cEEEEECCCCcEEEEEc-CCCCCEEEEEec--CC-EEEEEeCCCeEEEEECCcCcEEEEEC-C------------CCCcE
Confidence 58999999999999999 999999999998 44 89999999999999999998877776 3 56789
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLH 156 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 156 (250)
.++.++ ++.+++|+.||.|++||+++++....+..+ ...+.++.+ ++.++++ +..+ .++....+
T Consensus 203 ~~~~~~--------~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~~-~~~dg~i~iwd~~~~~ 270 (445)
T 2ovr_B 203 RCMHLH--------EKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRCVQY--DGRRVVS-GAYDFMVKVWDPETET 270 (445)
T ss_dssp EEEEEE--------TTEEEEEETTSEEEEEESSSCCEEEEEECC-SSCEEEEEE--CSSCEEE-EETTSCEEEEEGGGTE
T ss_pred EEEEec--------CCEEEEEeCCCEEEEEECCCCcEEEEEcCC-cccEEEEEE--CCCEEEE-EcCCCEEEEEECCCCc
Confidence 998885 467999999999999999998877766544 467888888 6777773 3322 22334455
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
.+..+.+|...|.++.|. +.++++|+.||.|++||++++ +.+..+.+|...+.++.+. +++++
T Consensus 271 ~~~~~~~~~~~v~~~~~~-----~~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~---~~~l~ 333 (445)
T 2ovr_B 271 CLHTLQGHTNRVYSLQFD-----GIHVVSGSLDTSIRVWDVETG---------NCIHTLTGHQSLTSGMELK---DNILV 333 (445)
T ss_dssp EEEEECCCSSCEEEEEEC-----SSEEEEEETTSCEEEEETTTC---------CEEEEECCCCSCEEEEEEE---TTEEE
T ss_pred EeEEecCCCCceEEEEEC-----CCEEEEEeCCCeEEEEECCCC---------CEEEEEcCCcccEEEEEEe---CCEEE
Confidence 667888999999999874 689999999999999999997 5666778899999888774 55899
Q ss_pred EeeCCceEEEEeCC
Q 025649 237 VCDTSKVVKVYSIS 250 (250)
Q Consensus 237 s~~~d~~i~vw~~~ 250 (250)
+|+.||.|++||++
T Consensus 334 ~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 334 SGNADSTVKIWDIK 347 (445)
T ss_dssp EEETTSCEEEEETT
T ss_pred EEeCCCeEEEEECC
Confidence 99999999999973
No 113
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1e-27 Score=188.39 Aligned_cols=204 Identities=20% Similarity=0.225 Sum_probs=167.1
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+++++.+..+. +|...|.+++|++ . .|++|+.||+|++||+++++.+..+.. |...+
T Consensus 180 ~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~--~-~l~s~s~dg~i~~wd~~~~~~~~~~~~-------------~~~~v 242 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLY-GHTSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQCLHVLMG-------------HVAAV 242 (445)
T ss_dssp CEEEEETTTTEEEEEEC-CCSSCEEEEEEET--T-EEEEEETTSEEEEEESSSCCEEEEEEC-------------CSSCE
T ss_pred eEEEEECCcCcEEEEEC-CCCCcEEEEEecC--C-EEEEEeCCCEEEEEECCCCcEEEEEcC-------------CcccE
Confidence 58999999999999999 9999999999964 4 799999999999999999988877762 46788
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLH 156 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 156 (250)
.++.+ +++++++++.||.|++||+++++....+..+ ...+.++.+ ++.++++ +..+ .++....+
T Consensus 243 ~~~~~--------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~~-~~~d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 243 RCVQY--------DGRRVVSGAYDFMVKVWDPETETCLHTLQGH-TNRVYSLQF--DGIHVVS-GSLDTSIRVWDVETGN 310 (445)
T ss_dssp EEEEE--------CSSCEEEEETTSCEEEEEGGGTEEEEEECCC-SSCEEEEEE--CSSEEEE-EETTSCEEEEETTTCC
T ss_pred EEEEE--------CCCEEEEEcCCCEEEEEECCCCcEeEEecCC-CCceEEEEE--CCCEEEE-EeCCCeEEEEECCCCC
Confidence 88887 3678999999999999999998887776644 467888888 7777773 3222 23334455
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec---cCCceeEEEecCCCCC
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN---LNKKVNWLCTTPTESE 233 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~ 233 (250)
.+..+.+|...+.++.++ ++++++|+.||.|++||++++ +.+..+.. |...|.+++|+ ++
T Consensus 311 ~~~~~~~~~~~v~~~~~~-----~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~~~v~~~~~~---~~ 373 (445)
T 2ovr_B 311 CIHTLTGHQSLTSGMELK-----DNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQSAVTCLQFN---KN 373 (445)
T ss_dssp EEEEECCCCSCEEEEEEE-----TTEEEEEETTSCEEEEETTTC---------CEEEEECSTTSCSSCEEEEEEC---SS
T ss_pred EEEEEcCCcccEEEEEEe-----CCEEEEEeCCCeEEEEECCCC---------cEEEEEccCCCCCCCEEEEEEC---CC
Confidence 667788999999988875 469999999999999999987 44445544 88899999984 46
Q ss_pred eEEEeeCCceEEEEeCC
Q 025649 234 NLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 234 ~l~s~~~d~~i~vw~~~ 250 (250)
+|++|+.||.|++||++
T Consensus 374 ~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLK 390 (445)
T ss_dssp EEEEEETTSEEEEEETT
T ss_pred EEEEEeCCCeEEEEECC
Confidence 89999999999999974
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.4e-28 Score=184.32 Aligned_cols=175 Identities=9% Similarity=0.009 Sum_probs=131.8
Q ss_pred EEcccceeeeeeccCCCCCeeeEEEcC--CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeE
Q 025649 5 IDIRQHCLYKSLRAGHSSICSSVQFIP--WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA 82 (250)
Q Consensus 5 wd~~~~~~~~~l~~~h~~~v~~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (250)
||+.+++.+..+..+|.+.|.+++|+| +++ +|++|+.||+|++||+++++.+...... +...+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~------------~~~~i~~ 175 (343)
T 3lrv_A 109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAK------------SDVEYSS 175 (343)
T ss_dssp EETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCC------------SSCCCCE
T ss_pred eecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecC------------CCCceEE
Confidence 355566656666557889999999999 998 8999999999999999998876555433 4457999
Q ss_pred EecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeecccceeEEEee-----eeeeccCeeee
Q 025649 83 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKVNIRDAEME-----ILDQSGGKRLH 156 (250)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 156 (250)
++|+| ++.+|++|+.||.|++||+++++.. ..+...+...+.+++|+|++.++++.+ .||........
T Consensus 176 ~~~~p------dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 176 GVLHK------DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTL 249 (343)
T ss_dssp EEECT------TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCB
T ss_pred EEECC------CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcce
Confidence 99999 9999999999999999999998876 555554568999999999999998532 23333322222
Q ss_pred eeccccCccccEE--EEEeecCCCCCcEEEEeeC-CCeEEEEecCCCc
Q 025649 157 LDYSVGGHTAAAS--CVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQ 201 (250)
Q Consensus 157 ~~~~~~~h~~~v~--~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~ 201 (250)
.+..+..|...+. +++|+ |+|++|++++. |+.|++|++....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~---~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 250 AYPTYTIPEFKTGTVTYDID---DSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp SSCCCBC-----CCEEEEEC---TTSSEEEEEETTTTEEEEEEECTTT
T ss_pred eecccccccccccceEEEEC---CCCCEEEEecCCCCcEEEEEEcccc
Confidence 2223333444444 69999 89999999988 9999999997653
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.1e-28 Score=191.58 Aligned_cols=208 Identities=10% Similarity=0.077 Sum_probs=156.5
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC---CccceecCCCC------------------CC-----------
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPE------------------NN----------- 68 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~------------------~~----------- 68 (250)
..++.+++|+|+|+ +|+++ .++.|++||+.+++ .+..+..+... ..
T Consensus 4 ~~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 35789999999998 66665 47899999999998 65555422110 00
Q ss_pred ------------CCCCcccCCCceeEEecCCCcccCCCCCEE-EEEeCCCeEEEEeCC--CceeEeeccC-CCCCCccce
Q 025649 69 ------------GNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIE--SELNISRSKS-TTKPLKGSQ 132 (250)
Q Consensus 69 ------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~--~~~~~~~~~~-~~~~~~~~~ 132 (250)
.......+...|.+++|+| ++++| ++++.||.|++||+. ++.....+.. .....+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 155 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTS------DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAI 155 (450)
T ss_dssp ------------------CCCCCEEEEEECT------TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEE
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcC------CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEE
Confidence 0000112344799999999 89986 899999999999999 7766665542 334778999
Q ss_pred eecccceeEEEee------eeeeccCeeee-eeccccCccccEEEEEeecCCCC---CcEEEEeeCCCeEEEEecCCCcc
Q 025649 133 STSKVNIRDAEME------ILDQSGGKRLH-LDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQG 202 (250)
Q Consensus 133 ~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~---~~~l~s~~~d~~i~iwd~~~~~~ 202 (250)
+|+|+++++++.+ .++........ ....+.+|...|.+++|+ |+ +++|++|+.|+.|++||++++
T Consensus 156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s---p~~~~~~~l~s~~~d~~i~vwd~~~~-- 230 (450)
T 2vdu_B 156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI---KDSDGHQFIITSDRDEHIKISHYPQC-- 230 (450)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE---ECTTSCEEEEEEETTSCEEEEEESCT--
T ss_pred EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc---CCCCCCcEEEEEcCCCcEEEEECCCC--
Confidence 9999999998432 22222222222 344778899999999999 78 899999999999999999987
Q ss_pred eecccccceeee-eeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 203 VQTSINNDLLIK-NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 203 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
..+.. ..+|...|.+++|+ ++++|++++.|+.|++||++
T Consensus 231 -------~~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~ 270 (450)
T 2vdu_B 231 -------FIVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWK 270 (450)
T ss_dssp -------TCEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETT
T ss_pred -------ceeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECC
Confidence 44444 56899999999998 88899999999999999974
No 116
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=7.6e-28 Score=182.62 Aligned_cols=201 Identities=12% Similarity=0.037 Sum_probs=156.9
Q ss_pred eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC---ccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649 14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP---NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM 90 (250)
Q Consensus 14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (250)
.... +|.+.|.+++|+|+++ +|++++.||.|++||+.+++. ...+. + |...|.+++|+|
T Consensus 5 ~~~~-~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~------------~~~~v~~~~~~~--- 66 (342)
T 1yfq_A 5 QIEQ-APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSL-R------------YKHPLLCCNFID--- 66 (342)
T ss_dssp ECSS-CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEE-E------------CSSCEEEEEEEE---
T ss_pred eccc-CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccceeee-e------------cCCceEEEEECC---
Confidence 3345 8999999999999999 899999999999999988762 22222 2 678999999998
Q ss_pred cCCCCC-EEEEEeCCCeEEEEeC-CCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCee---------e
Q 025649 91 LDKTNK-ICVVAKGDGVVDVINI-ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKR---------L 155 (250)
Q Consensus 91 ~~~~~~-~l~~~~~d~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------~ 155 (250)
+++ +|++++.||.|++||+ .+++........+...+.+++|+| +..+++ +..+ .++... .
T Consensus 67 ---~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~ 141 (342)
T 1yfq_A 67 ---NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIA-ASWDGLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp ---SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEE-EETTSEEEEECHHHHTTBCEEEEE
T ss_pred ---CCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEE-EcCCCeEEEEcccccccccccccC
Confidence 899 9999999999999999 877653322211457899999999 888874 3222 222233 4
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC-CcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR-FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 234 (250)
+++..+. |...|.+++|+ +++ +++++.|+.|++||+++ +.. ........|...+.+++|+|.++++
T Consensus 142 ~~~~~~~-~~~~v~~~~~~---~~~--l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~i~~i~~~~~~~~~ 208 (342)
T 1yfq_A 142 LNSNNTK-VKNKIFTMDTN---SSR--LIVGMNNSQVQWFRLPLCEDD-------NGTIEESGLKYQIRDVALLPKEQEG 208 (342)
T ss_dssp SCSSSSS-SCCCEEEEEEC---SSE--EEEEESTTEEEEEESSCCTTC-------CCEEEECSCSSCEEEEEECSGGGCE
T ss_pred CeeeEEe-eCCceEEEEec---CCc--EEEEeCCCeEEEEECCccccc-------cceeeecCCCCceeEEEECCCCCCE
Confidence 4555666 88999999999 665 99999999999999998 532 2333455788899999999636789
Q ss_pred EEEeeCCceEEEEeCC
Q 025649 235 LVVCDTSKVVKVYSIS 250 (250)
Q Consensus 235 l~s~~~d~~i~vw~~~ 250 (250)
+++++.||.|++|+++
T Consensus 209 l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 209 YACSSIDGRVAVEFFD 224 (342)
T ss_dssp EEEEETTSEEEEEECC
T ss_pred EEEEecCCcEEEEEEc
Confidence 9999999999999973
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.5e-26 Score=178.67 Aligned_cols=211 Identities=11% Similarity=0.065 Sum_probs=163.5
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+++++.+..+. .|. .+.+++|+|+++.++++++.|+.|++||+.+++.+..+..+ ..+
T Consensus 13 ~v~v~d~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~--------------~~v 76 (391)
T 1l0q_A 13 NISVIDVTSNKVTATIP-VGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--------------SSP 76 (391)
T ss_dssp EEEEEETTTTEEEEEEE-CSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--------------SSE
T ss_pred EEEEEECCCCeEEEEee-cCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC--------------CCc
Confidence 48999999999999998 665 58999999999844578889999999999999888887733 489
Q ss_pred eEEecCCCcccCCCCCEEE-EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee----eeeccCeee
Q 025649 81 HAIAIPDADMLDKTNKICV-VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI----LDQSGGKRL 155 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 155 (250)
.+++|+| ++++|+ +++.++.|++||+.+++........ ..+.+++|+|+++.++..+. ...++....
T Consensus 77 ~~~~~sp------dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 148 (391)
T 1l0q_A 77 QGVAVSP------DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK 148 (391)
T ss_dssp EEEEECT------TSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred cceEECC------CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC--CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 9999999 888775 4556799999999998877666554 56789999999998753322 111222233
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEE-EEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 234 (250)
+.+..+..+ ..+.+++|+ |+++++ ++++.|+.|++||++++ +.. ....+...+..++|+| ++++
T Consensus 149 ~~~~~~~~~-~~~~~~~~~---~dg~~l~~~~~~~~~v~~~d~~~~---------~~~-~~~~~~~~~~~~~~~~-~g~~ 213 (391)
T 1l0q_A 149 AVINTVSVG-RSPKGIAVT---PDGTKVYVANFDSMSISVIDTVTN---------SVI-DTVKVEAAPSGIAVNP-EGTK 213 (391)
T ss_dssp EEEEEEECC-SSEEEEEEC---TTSSEEEEEETTTTEEEEEETTTT---------EEE-EEEECSSEEEEEEECT-TSSE
T ss_pred cEEEEEecC-CCcceEEEC---CCCCEEEEEeCCCCEEEEEECCCC---------eEE-EEEecCCCccceEECC-CCCE
Confidence 344455544 456899999 888877 67788999999999986 332 3334567889999998 8888
Q ss_pred EEEee---CCceEEEEeCC
Q 025649 235 LVVCD---TSKVVKVYSIS 250 (250)
Q Consensus 235 l~s~~---~d~~i~vw~~~ 250 (250)
+++++ .++.|++||++
T Consensus 214 l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 214 AYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp EEEEEECSSCCEEEEEETT
T ss_pred EEEEecCcCCCcEEEEECC
Confidence 88877 68999999974
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=6.1e-26 Score=175.31 Aligned_cols=211 Identities=16% Similarity=0.061 Sum_probs=162.5
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+.+++.+..+. .+. .+.+++|+|+++.++++++.++.|++||+.+++.+..+.. ...+
T Consensus 55 ~i~v~d~~~~~~~~~~~-~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--------------~~~~ 118 (391)
T 1l0q_A 55 DVSIIDTATNNVIATVP-AGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--------------GKSP 118 (391)
T ss_dssp EEEEEETTTTEEEEEEE-CSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--------------SSSE
T ss_pred eEEEEECCCCeEEEEEE-CCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC--------------CCCc
Confidence 48999999999999998 544 8999999999994446777889999999999988777763 3568
Q ss_pred eEEecCCCcccCCCCCEE-EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeee----eeccCeee
Q 025649 81 HAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL----DQSGGKRL 155 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 155 (250)
.+++|+| +++.+ ++++.|+.|++||+.+++........ ..+..++|+|+++.++..+.. ..++....
T Consensus 119 ~~~~~s~------dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~ 190 (391)
T 1l0q_A 119 LGLALSP------DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190 (391)
T ss_dssp EEEEECT------TSSEEEEEETTTTEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ceEEECC------CCCEEEEEeCCCCEEEEEECCCCcEEEEEecC--CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 9999998 88877 78888999999999998877766554 456899999999887533221 12222222
Q ss_pred eeeccccCccccEEEEEeecCCCCCcEEEEee---CCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649 156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
+.+..+. +...+.+++|+ |+++++++++ .++.|++||++++ +.+..+..|. .+.+++|+| ++
T Consensus 191 ~~~~~~~-~~~~~~~~~~~---~~g~~l~~~~~~~~~~~v~~~d~~~~---------~~~~~~~~~~-~~~~~~~s~-dg 255 (391)
T 1l0q_A 191 SVIDTVK-VEAAPSGIAVN---PEGTKAYVTNVDKYFNTVSMIDTGTN---------KITARIPVGP-DPAGIAVTP-DG 255 (391)
T ss_dssp EEEEEEE-CSSEEEEEEEC---TTSSEEEEEEECSSCCEEEEEETTTT---------EEEEEEECCS-SEEEEEECT-TS
T ss_pred eEEEEEe-cCCCccceEEC---CCCCEEEEEecCcCCCcEEEEECCCC---------eEEEEEecCC-CccEEEEcc-CC
Confidence 3333333 45678999999 8999888887 6899999999987 4444444443 578899998 77
Q ss_pred CeE-EEeeCCceEEEEeCC
Q 025649 233 ENL-VVCDTSKVVKVYSIS 250 (250)
Q Consensus 233 ~~l-~s~~~d~~i~vw~~~ 250 (250)
+++ ++++.|+.|++||++
T Consensus 256 ~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 256 KKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp SEEEEEETTTTEEEEEETT
T ss_pred CEEEEEcCCCCEEEEEECC
Confidence 766 677899999999974
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.1e-27 Score=183.73 Aligned_cols=205 Identities=8% Similarity=-0.043 Sum_probs=145.3
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccc-------eecCCC---------CCCC-CCCcccCCCcee
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI-------VNFGLP---------ENNG-NAGQCYNPAFVH 81 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~-------~~~~~~---------~~~~-~~~~~~~~~~v~ 81 (250)
.-...|.+++|+|||+ ++||++.|++|+ |...++.+.. +.+... .... ......+...|.
T Consensus 13 ~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~ 89 (588)
T 2j04_A 13 EFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPR 89 (588)
T ss_dssp CCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEE
T ss_pred HhhccEEEEEECCCCC-EEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEE
Confidence 4567899999999999 999999999998 7655553310 100000 0000 111113467899
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC----CCccceeecccceeEEEee------eeeecc
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----PLKGSQSTSKVNIRDAEME------ILDQSG 151 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------~~~~~~ 151 (250)
+++|+| +|++||+++.||.|++||.+. ...... +.. ..+.+++|||||+++++.+ .|+...
T Consensus 90 ~vawSP------dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~ 160 (588)
T 2j04_A 90 VCKPSP------IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK 160 (588)
T ss_dssp EEEECS------SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred EEEECC------CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 999999 999999999999999999654 444333 321 2589999999999999522 344333
Q ss_pred Cee--e--eeeccc----cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee-eccCCce
Q 025649 152 GKR--L--HLDYSV----GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-INLNKKV 222 (250)
Q Consensus 152 ~~~--~--~~~~~~----~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v 222 (250)
... . -.+.++ .+|...|.+++|+ |+| +++++.|+.|++||+...... .....+ .+|...|
T Consensus 161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS---Pdg--Laass~D~tVrlWd~~~~~~~------~~~~tL~~~h~~~V 229 (588)
T 2j04_A 161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWY---EDV--LVAALSNNSVFSMTVSASSHQ------PVSRMIQNASRRKI 229 (588)
T ss_dssp CTTTCCCCEEEEEEECSCTTCCCCEEEEEEE---TTE--EEEEETTCCEEEECCCSSSSC------CCEEEEECCCSSCC
T ss_pred CccccccceeeeeeecccccccccEEEEEEc---CCc--EEEEeCCCeEEEEECCCCccc------cceeeecccccCcE
Confidence 211 0 123444 6788999999999 888 888889999999999886321 122334 3788899
Q ss_pred eEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 223 NWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 223 ~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
.+++|+ ++.|++++ ++.|++||+.
T Consensus 230 ~svaFs---g~~LASa~-~~tIkLWd~~ 253 (588)
T 2j04_A 230 TDLKIV---DYKVVLTC-PGYVHKIDLK 253 (588)
T ss_dssp CCEEEE---TTEEEEEC-SSEEEEEETT
T ss_pred EEEEEE---CCEEEEEe-CCeEEEEECC
Confidence 999998 46888887 6999999963
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.5e-26 Score=178.95 Aligned_cols=212 Identities=14% Similarity=0.116 Sum_probs=163.5
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|++||+++++.+..+. .|...+.+++|+|+++.++++++.|+.|++||+++++.+..+.. ...+
T Consensus 192 ~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--------------~~~~ 256 (433)
T 3bws_A 192 AVHVFDLKTLAYKATVD-LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK--------------IGLP 256 (433)
T ss_dssp EEEEEETTTCCEEEEEE-CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC--------------CSEE
T ss_pred EEEEEECCCceEEEEEc-CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC--------------CCCc
Confidence 47899999999999999 99999999999999994446777899999999998887766652 3568
Q ss_pred eEEecCCCcccCCCCCEEEEEe--------CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----
Q 025649 81 HAIAIPDADMLDKTNKICVVAK--------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD---- 148 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~--------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 148 (250)
.+++++| +++++++++ .|+.|++||+++++........ ..+..++|+|+++.++..+..+
T Consensus 257 ~~~~~~~------~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 257 RGLLLSK------DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP--GNKRHIVSGNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp EEEEECT------TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE--ECEEEEEECSSTTEEEEEETTTTEEE
T ss_pred eEEEEcC------CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC--CCcceEEECCCCCEEEEEecCCCEEE
Confidence 9999998 999998887 5899999999988776655332 4677899999997665332211
Q ss_pred eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeC---------------CCeEEEEecCCCcceecccccceee
Q 025649 149 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN---------------DKLVKVWDCSRFQGVQTSINNDLLI 213 (250)
Q Consensus 149 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~ 213 (250)
.++....+.+..+. +...+.+++|+ |+|+++++++. ||.|++||+.++ +.+.
T Consensus 329 v~d~~~~~~~~~~~-~~~~~~~~~~s---~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---------~~~~ 395 (433)
T 3bws_A 329 VYDLKEKKVQKSIP-VFDKPNTIALS---PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---------TVKE 395 (433)
T ss_dssp EEETTTTEEEEEEE-CSSSEEEEEEC---TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---------EEEE
T ss_pred EEECCCCcEEEEec-CCCCCCeEEEc---CCCCEEEEEecCCCccccccccccccceEEEEEECCCC---------cEEE
Confidence 11222223333443 56778999999 89998888776 579999999987 3433
Q ss_pred eeeccCCceeEEEecCCCCCeEEEee-CCceEEEEeCC
Q 025649 214 KNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSIS 250 (250)
Q Consensus 214 ~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~~ 250 (250)
.+.. ...+..++|+| ++++|++++ .|+.|++|+++
T Consensus 396 ~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 396 FWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEET
T ss_pred EecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEec
Confidence 3333 55789999998 888888776 49999999974
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=6.3e-26 Score=177.48 Aligned_cols=212 Identities=12% Similarity=0.083 Sum_probs=164.4
Q ss_pred CcEEEEcccceeee-----eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649 1 MWQIIDIRQHCLYK-----SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 1 ti~iwd~~~~~~~~-----~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
+|++||+.+++... .+. +|...|.+++|+|++. ++++++.|+.|++||+++++.+..+..
T Consensus 145 ~i~~~d~~~g~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~~~~~~~------------- 209 (433)
T 3bws_A 145 GMDVLDINSGQTVRLSPPEKYK-KKLGFVETISIPEHNE-LWVSQMQANAVHVFDLKTLAYKATVDL------------- 209 (433)
T ss_dssp SEEEEETTTCCEEEECCCHHHH-TTCCEEEEEEEGGGTE-EEEEEGGGTEEEEEETTTCCEEEEEEC-------------
T ss_pred eEEEEECCCCeEeeecCccccc-ccCCceeEEEEcCCCE-EEEEECCCCEEEEEECCCceEEEEEcC-------------
Confidence 48999999998887 566 8999999999999998 899999999999999999888777762
Q ss_pred CCCceeEEecCCCcccCCCCCEEE-EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee------
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD------ 148 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 148 (250)
+...+.+++|+| +++.++ +++.|+.|++||+++++....+... ..+.+++++|+++.++..+...
T Consensus 210 ~~~~~~~~~~~~------~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 210 TGKWSKILLYDP------IRDLVYCSNWISEDISVIDRKTKLEIRKTDKI--GLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp SSSSEEEEEEET------TTTEEEEEETTTTEEEEEETTTTEEEEECCCC--SEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred CCCCeeEEEEcC------CCCEEEEEecCCCcEEEEECCCCcEEEEecCC--CCceEEEEcCCCCEEEEEECCCCccccC
Confidence 356789999998 888775 5558999999999998877666553 5689999999999888544211
Q ss_pred -----eccCeeeeeeccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCce
Q 025649 149 -----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 222 (250)
Q Consensus 149 -----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (250)
.++....+.+..+ .|...+.+++|+ |+++ ++++++.|+.|++||+.++ +... ...+...+
T Consensus 282 dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~---~~g~~l~~~~~~~~~v~v~d~~~~---------~~~~-~~~~~~~~ 347 (433)
T 3bws_A 282 GGRLGIYSMDKEKLIDTI-GPPGNKRHIVSG---NTENKIYVSDMCCSKIEVYDLKEK---------KVQK-SIPVFDKP 347 (433)
T ss_dssp CEEEEEEETTTTEEEEEE-EEEECEEEEEEC---SSTTEEEEEETTTTEEEEEETTTT---------EEEE-EEECSSSE
T ss_pred CCeEEEEECCCCcEEeec-cCCCCcceEEEC---CCCCEEEEEecCCCEEEEEECCCC---------cEEE-EecCCCCC
Confidence 1121222222222 455678999999 7886 5567788999999999986 3333 33467789
Q ss_pred eEEEecCCCCCeEEEeeC---------------CceEEEEeCC
Q 025649 223 NWLCTTPTESENLVVCDT---------------SKVVKVYSIS 250 (250)
Q Consensus 223 ~~~~~~~~~~~~l~s~~~---------------d~~i~vw~~~ 250 (250)
..++|+| +++++++++. ||.|++||+.
T Consensus 348 ~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 348 NTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp EEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred CeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 9999998 8888888775 5799999973
No 122
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=9.8e-26 Score=169.28 Aligned_cols=195 Identities=16% Similarity=0.210 Sum_probs=150.4
Q ss_pred eeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC
Q 025649 24 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 103 (250)
Q Consensus 24 v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 103 (250)
.++|+||+++ +|++| .|++|+|||+.+++.+..+..+. |...|.+++|+| ++++|++|+.
T Consensus 28 ~~~l~WS~~~--~lAvg-~D~tV~iWd~~tg~~~~~~~~~~-----------~~~~V~~v~~~~------~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVA-LDNSVYLWSASSGDILQLLQMEQ-----------PGEYISSVAWIK------EGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEE-ETTEEEEEETTTCCEEEEEECCS-----------TTCCEEEEEECT------TSSEEEEEET
T ss_pred ceEEEECCCC--EEEEE-eCCEEEEEECCCCCEEEEEEecC-----------CCCeEEEEEECC------CCCEEEEEEC
Confidence 5789999875 67766 48999999999999888876441 567899999999 9999999999
Q ss_pred CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec-----cCeeeeeeccccCccccEEEEEeecCCC
Q 025649 104 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS-----GGKRLHLDYSVGGHTAAASCVAFSMFGE 178 (250)
Q Consensus 104 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 178 (250)
||.|++||+++++.+.....+. ..+ ..+++++..++ .+..+.. .......+..+.+|...+.++.++ +
T Consensus 88 Dg~v~iw~~~~~~~~~~~~~h~-~~~--~~~~~~~~~l~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLRNMTSHS-ARV--GSLSWNSYILS-SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA---P 160 (318)
T ss_dssp TSEEEEEETTTTEEEEEEECCS-SCE--EEEEEETTEEE-EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC---T
T ss_pred CCcEEEeecCCceeEEEecCcc-ceE--EEeecCCCEEE-EEecCCceEeeecCCCceeEEEEcCccCceEEEEEc---C
Confidence 9999999999998887766543 333 34556666666 3332221 112233456678899999999999 8
Q ss_pred CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE--EEeeCCceEEEEeCC
Q 025649 179 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL--VVCDTSKVVKVYSIS 250 (250)
Q Consensus 179 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l--~s~~~d~~i~vw~~~ 250 (250)
+++++++++.|+.|++||+++++... ........|...|..++++|.++..+ ++++.++.|++||.+
T Consensus 161 ~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~ 229 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWPSAPGEGGW-----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 229 (318)
T ss_dssp TSSEEEEEETTSCEEEEESSCBTTBS-----CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT
T ss_pred CCCEEEEEecCcceeEEECCCCcccc-----cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc
Confidence 99999999999999999999875432 33455667888999999998666554 457789999999963
No 123
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=8.6e-26 Score=176.20 Aligned_cols=196 Identities=16% Similarity=0.213 Sum_probs=153.0
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 102 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 102 (250)
.++.|+|++++ +|++|. |++|+|||..+++....+..+. |...|++++|+| ++++|++|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~~~~-----------~~~~V~sv~fsp------dg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQMEQ-----------PGEYISSVAWIK------EGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEECCS-----------TTCCEEEEEECT------TSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEEecC-----------CCCcEEEEEECC------CCCEEEEEE
Confidence 35779999764 677665 8999999999999888776441 567899999999 999999999
Q ss_pred CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc-----CeeeeeeccccCccccEEEEEeecCC
Q 025649 103 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG-----GKRLHLDYSVGGHTAAASCVAFSMFG 177 (250)
Q Consensus 103 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~p~~ 177 (250)
.||.|++||+++++.+.....+ ...+.++++ ++..++ .+..+... ......+..+.+|...+..+.++
T Consensus 167 ~Dg~v~iWd~~~~~~~~~~~~h-~~~v~~~s~--~~~~l~-sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~--- 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLRNMTSH-SARVGSLSW--NSYILS-SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA--- 239 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECCC-SSCEEEEEE--ETTEEE-EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC---
T ss_pred CCCeEEEEEcCCCcEEEEEeCC-CCceEEEee--CCCEEE-EEeCCCceeEeeecccceeeEEecccccceeeeeec---
Confidence 9999999999999888776654 355555554 556666 33333221 12233456778999999999999
Q ss_pred CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE--eeCCceEEEEeCC
Q 025649 178 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV--CDTSKVVKVYSIS 250 (250)
Q Consensus 178 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s--~~~d~~i~vw~~~ 250 (250)
|+++++++++.|+.+++||..++.... ..+.....|...|.+++|+|.++.++++ |+.|+.|++||++
T Consensus 240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~-----~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 240 PDGRHLASGGNDNLVNVWPSAPGEGGW-----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp TTSSEEEEEETTSCEEEEESSCCSSCS-----CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred CCCCeeeeeeccccceEEeeccccccc-----eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence 899999999999999999998864321 3445677899999999999977777766 4589999999974
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=9.8e-26 Score=172.11 Aligned_cols=225 Identities=12% Similarity=0.073 Sum_probs=155.0
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
++|||+++++...... . ..+..+++.++++.++++++.|++|++||+.+++.+..+.. ...|.
T Consensus 42 ~~iw~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~--------------~~~v~ 104 (355)
T 3vu4_A 42 FEIYNVHPVAHIMSQE-M--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV--------------DAPVK 104 (355)
T ss_dssp EEEEEETTEEEEEEEE-C--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC--------------SSCEE
T ss_pred EEEEecCCcceeeeee-c--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEEC--------------CCceE
Confidence 6899998887765554 2 25888999998884447788899999999999988877762 34555
Q ss_pred EEecCCCc----------ccCC-CC------------------CEEEE--EeCCCeEEEEeCCCcee-------------
Q 025649 82 AIAIPDAD----------MLDK-TN------------------KICVV--AKGDGVVDVINIESELN------------- 117 (250)
Q Consensus 82 ~~~~~~~~----------~~~~-~~------------------~~l~~--~~~d~~i~~~d~~~~~~------------- 117 (250)
++.+++.. .++. ++ .+++. |+.||.|++||++++..
T Consensus 105 ~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~ 184 (355)
T 3vu4_A 105 DLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAI 184 (355)
T ss_dssp EEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC----------------
T ss_pred EEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCcccccccccccccc
Confidence 55555410 0000 11 34444 57899999999987541
Q ss_pred ---EeeccCCCCCCccceeecccceeEEEeeee-----eeccCeeeeeecccc-C-ccccEEEEEeecCCCCCcEEEEee
Q 025649 118 ---ISRSKSTTKPLKGSQSTSKVNIRDAEMEIL-----DQSGGKRLHLDYSVG-G-HTAAASCVAFSMFGERGKYLISGG 187 (250)
Q Consensus 118 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~-h~~~v~~~~~~p~~~~~~~l~s~~ 187 (250)
...+ ..+...+.+++|+|+|+++++ +.. ..++....+++..+. + |...|.+++|+ |++++|++++
T Consensus 185 ~p~~~~~-~~h~~~v~~~~~s~~g~~l~s-~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s---~~~~~l~s~s 259 (355)
T 3vu4_A 185 LGKGVLI-KAHTNPIKMVRLNRKSDMVAT-CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWS---TDGSKLAVVS 259 (355)
T ss_dssp --CCEEE-CCCSSCEEEEEECTTSSEEEE-EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEEC---TTSCEEEEEE
T ss_pred CcccEEE-EccCCceEEEEECCCCCEEEE-EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEEC---CCCCEEEEEE
Confidence 2222 344688999999999999984 333 333445556667777 5 99999999999 8999999999
Q ss_pred CCCeEEEEecCCCcceecccccc-e-------------eeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 188 NDKLVKVWDCSRFQGVQTSINND-L-------------LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 188 ~d~~i~iwd~~~~~~~~~~~~~~-~-------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.|++|++||++.........-.. . .............++|++ +++.+++++.||.+++|++
T Consensus 260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 260 DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS-ESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS-SSEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC-CCCEEEEEeCCCeEEEEEE
Confidence 99999999998753221000000 0 000011222346688997 8889999999999999986
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=3e-26 Score=169.54 Aligned_cols=174 Identities=11% Similarity=0.036 Sum_probs=122.6
Q ss_pred CcEEEEc-ccceeeeeeccCCCCCeeeEEEcC---CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649 1 MWQIIDI-RQHCLYKSLRAGHSSICSSVQFIP---WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 1 ti~iwd~-~~~~~~~~l~~~h~~~v~~l~~~~---~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
+|++|++ .+++.+..+. +|...+..++|+| +++ +|++++.|++|+|||++++++++++..+.. +
T Consensus 158 ~V~~~~~s~dG~~~~s~~-~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~----------~ 225 (356)
T 2w18_A 158 QVEVMTFAEDGGGKENQF-LMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKMHIDDS----------Y 225 (356)
T ss_dssp EEEEEEECTTSCEEEEEE-ECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEEECCC------------
T ss_pred cEEEEEECCCCceeeeec-cCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEEcCCCc----------c
Confidence 4788888 4578888888 8888888888888 667 899999999999999999999999873310 1
Q ss_pred CCceeEEecCCCcccCCCCCEE------------EEEeCCCeEEEEeCCCceeEeecc----CCCCCCccceeeccccee
Q 025649 77 PAFVHAIAIPDADMLDKTNKIC------------VVAKGDGVVDVINIESELNISRSK----STTKPLKGSQSTSKVNIR 140 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l------------~~~~~d~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 140 (250)
...+.+++|+| +++++ ++|+.|++|++||..+++.+.... ..+... .+..+.++..
T Consensus 226 v~~v~~vafSp------dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~--~lsg~~sg~~ 297 (356)
T 2w18_A 226 QASVCHKAYSE------MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR--FLEGDVKDHC 297 (356)
T ss_dssp -CCCEEEEEEE------TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC--EEEEEEETTE
T ss_pred eeeeEEEEECC------CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce--eEccccCCCE
Confidence 23566778888 77765 678899999999999988764431 111111 2222333445
Q ss_pred EEEeee----eeeccCeeeeeeccccCccccEE-EEEeecCCCCCcEEEEeeCCCeEEEEecC
Q 025649 141 DAEMEI----LDQSGGKRLHLDYSVGGHTAAAS-CVAFSMFGERGKYLISGGNDKLVKVWDCS 198 (250)
Q Consensus 141 ~~~~~~----~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~~~l~s~~~d~~i~iwd~~ 198 (250)
++ .+. ...++....+++.++.+|...+. +++|+ |+|++|++|+.|++|+|||+.
T Consensus 298 lA-SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS---PDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 298 AA-AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS---GTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EE-EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC---SSSSEEEEECTTSCEEEEEEC
T ss_pred EE-EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC---CCCCEEEEEECCCcEEEecCC
Confidence 55 332 22344555667778889987655 58999 899999999999999999963
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.5e-24 Score=168.83 Aligned_cols=208 Identities=10% Similarity=0.000 Sum_probs=155.1
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC---eEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS---KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
+|++||+. ++....+. +|...|.+++|+|+|+ .|++++.++ .|++||+.+++...... +.
T Consensus 160 ~i~i~d~~-g~~~~~l~-~~~~~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~~~~l~~--------------~~ 222 (415)
T 2hqs_A 160 ELRVSDYD-GYNQFVVH-RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQVAS--------------FP 222 (415)
T ss_dssp EEEEEETT-SCSCEEEE-EESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCEEEEEC--------------CS
T ss_pred eEEEEcCC-CCCCEEEe-CCCCcceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCcEEEeec--------------CC
Confidence 47899997 45567888 8999999999999999 899888875 99999999887653322 35
Q ss_pred CceeEEecCCCcccCCCCCEEE-EEeCCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----ec
Q 025649 78 AFVHAIAIPDADMLDKTNKICV-VAKGDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QS 150 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 150 (250)
..+.+++|+| +++.|+ +++.++ .|++||+++++... +.. +...+.+++|+|+|+.++.....+ .+
T Consensus 223 ~~~~~~~~sp------dg~~la~~~~~~g~~~i~~~d~~~~~~~~-l~~-~~~~~~~~~~spdg~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 223 RHNGAPAFSP------DGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVY 294 (415)
T ss_dssp SCEEEEEECT------TSSEEEEEECTTSSCEEEEEETTTCCEEE-CCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred CcccCEEEcC------CCCEEEEEEecCCCceEEEEECCCCCEEe-CcC-CCCcccceEECCCCCEEEEEECCCCCcEEE
Confidence 6789999999 999887 666655 49999999877533 222 236788999999999888533211 11
Q ss_pred --cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC---CeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649 151 --GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 225 (250)
Q Consensus 151 --~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (250)
+....+ ...+..+...+.+++|+ |+|++|++++.+ ..|++||+.++ +. ..+..+. .+..+
T Consensus 295 ~~d~~~~~-~~~l~~~~~~~~~~~~s---pdG~~l~~~~~~~g~~~i~~~d~~~~---------~~-~~l~~~~-~~~~~ 359 (415)
T 2hqs_A 295 KVNINGGA-PQRITWEGSQNQDADVS---SDGKFMVMVSSNGGQQHIAKQDLATG---------GV-QVLSSTF-LDETP 359 (415)
T ss_dssp EEETTSSC-CEECCCSSSEEEEEEEC---TTSSEEEEEEECSSCEEEEEEETTTC---------CE-EECCCSS-SCEEE
T ss_pred EEECCCCC-EEEEecCCCcccCeEEC---CCCCEEEEEECcCCceEEEEEECCCC---------CE-EEecCCC-CcCCe
Confidence 111111 23344566788999999 899999988764 58999999986 33 2334443 78899
Q ss_pred EecCCCCCeEEEeeCCc---eEEEEeC
Q 025649 226 CTTPTESENLVVCDTSK---VVKVYSI 249 (250)
Q Consensus 226 ~~~~~~~~~l~s~~~d~---~i~vw~~ 249 (250)
+|+| +|++|++++.++ .|++||+
T Consensus 360 ~~sp-dg~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 360 SLAP-NGTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp EECT-TSSEEEEEEEETTEEEEEEEET
T ss_pred EEcC-CCCEEEEEEcCCCccEEEEEEC
Confidence 9998 899888887766 7999986
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=1.4e-25 Score=173.47 Aligned_cols=208 Identities=10% Similarity=0.001 Sum_probs=130.1
Q ss_pred cCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc--cCCCCCEEEEEeCCCeE
Q 025649 30 IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM--LDKTNKICVVAKGDGVV 107 (250)
Q Consensus 30 ~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~l~~~~~d~~i 107 (250)
.+++. +|++++.|++|+|||.++++........ ....|...|.+++|+|... ...++++|++++.|++|
T Consensus 98 ~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~--------~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 98 PVYSL-FLACVCQDNTVRLIITKNETIITQHVLG--------GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp CEEEE-EEEEEETTSCEEEEEEETTEEEEEEEEC--------TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred CCCCC-EEEEEeCCCcEEEEECCCCccceeeeec--------ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 34444 7999999999999999887653322111 1223789999999986321 12378899999999999
Q ss_pred EEEeCCCceeEeeccCCCCCCccceeecccce-eEEE------eeeeeeccCeeee----------------------ee
Q 025649 108 DVINIESELNISRSKSTTKPLKGSQSTSKVNI-RDAE------MEILDQSGGKRLH----------------------LD 158 (250)
Q Consensus 108 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~----------------------~~ 158 (250)
++||++++......... ...+.+++|+|++. ++++ +..||........ ..
T Consensus 169 ~~Wd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 169 IIWRLTDEGPILAGYPL-SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEEETTEEEEEEEEC-SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEEECCCCceeeeecCC-CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 99999887666555444 36788999999886 4553 2334433221100 01
Q ss_pred ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccc----------cceeeeeeccCCceeEEEec
Q 025649 159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN----------NDLLIKNINLNKKVNWLCTT 228 (250)
Q Consensus 159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~~v~~~~~~ 228 (250)
....+|...+.++.|++ ++++.+++++.|+++++||+..+........ .........+.. .....++
T Consensus 248 ~~~~~~~~~v~~v~~~~--~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 324 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIG--SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPS-LLGACPH 324 (393)
T ss_dssp ----CCSSSCSEEEEET--TTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCC-SSCCEEC
T ss_pred eecccccccceeeeeec--CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCc-ceeEEEc
Confidence 12346788899999975 7899999999999999999987643321100 000111111222 2233455
Q ss_pred CC-CCCeEEEeeCCceEEEEeCC
Q 025649 229 PT-ESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 229 ~~-~~~~l~s~~~d~~i~vw~~~ 250 (250)
|. ++.++++|+.||.|++||+.
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~ 347 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTY 347 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETT
T ss_pred cCCCCEEEEEECCCCEEEEEECC
Confidence 43 44456778899999999973
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=4.2e-23 Score=153.10 Aligned_cols=213 Identities=8% Similarity=0.048 Sum_probs=151.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+|++||+.+++.. .+. .|...|.+++|+|+++ +|++++ ++.|.+||+.+ ++........ +...
T Consensus 23 ~i~~~d~~~~~~~-~~~-~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~------------~~~~ 86 (297)
T 2ojh_A 23 SIEIFNIRTRKMR-VVW-QTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDTGF------------ATIC 86 (297)
T ss_dssp EEEEEETTTTEEE-EEE-EESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEECCCTT------------CCCB
T ss_pred eEEEEeCCCCcee-eec-cCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEecccc------------cccc
Confidence 4789999988876 445 5899999999999999 788876 78999999998 7765544322 2356
Q ss_pred eeEEecCCCcccCCCCCEEEEEe--CCCeEEE--EeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----ecc
Q 025649 80 VHAIAIPDADMLDKTNKICVVAK--GDGVVDV--INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSG 151 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 151 (250)
+.+++|+| ++++|++++ .++...+ +++.++... .+... ..+..++|+|+++.++..+..+ .+.
T Consensus 87 ~~~~~~sp------dg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~l~~ 157 (297)
T 2ojh_A 87 NNDHGISP------DGALYAISDKVEFGKSAIYLLPSTGGTPR-LMTKN--LPSYWHGWSPDGKSFTYCGIRDQVFDIYS 157 (297)
T ss_dssp CSCCEECT------TSSEEEEEECTTTSSCEEEEEETTCCCCE-ECCSS--SSEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred ccceEECC------CCCEEEEEEeCCCCcceEEEEECCCCceE-EeecC--CCccceEECCCCCEEEEEECCCCceEEEE
Confidence 88899999 999999998 3344455 455554432 22222 3478889999999887433222 111
Q ss_pred Ce-eeeeeccccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649 152 GK-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 229 (250)
Q Consensus 152 ~~-~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 229 (250)
.. .......+..+...+.+++|+ |+|++|+.++ .++.+++|++.... .....+..|...+..++|+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~s~ 226 (297)
T 2ojh_A 158 MDIDSGVETRLTHGEGRNDGPDYS---PDGRWIYFNSSRTGQMQIWRVRVDG--------SSVERITDSAYGDWFPHPSP 226 (297)
T ss_dssp EETTTCCEEECCCSSSCEEEEEEC---TTSSEEEEEECTTSSCEEEEEETTS--------SCEEECCCCSEEEEEEEECT
T ss_pred EECCCCcceEcccCCCccccceEC---CCCCEEEEEecCCCCccEEEECCCC--------CCcEEEecCCcccCCeEECC
Confidence 10 011223455677889999999 8999887665 58999999986321 33445566777889999998
Q ss_pred CCCCeEEEeeCC-----------ceEEEEeCC
Q 025649 230 TESENLVVCDTS-----------KVVKVYSIS 250 (250)
Q Consensus 230 ~~~~~l~s~~~d-----------~~i~vw~~~ 250 (250)
++++|++++.+ +.|++||+.
T Consensus 227 -dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~ 257 (297)
T 2ojh_A 227 -SGDKVVFVSYDADVFDHPRDLDVRVQLMDMD 257 (297)
T ss_dssp -TSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred -CCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence 88888887765 579999863
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=2.4e-23 Score=161.99 Aligned_cols=211 Identities=7% Similarity=-0.050 Sum_probs=155.0
Q ss_pred CcEEEEc--ccceee--eeeccCCCCCeeeEEEcCC--------------CCeEEEEecCC------CeEEEEEccCCCC
Q 025649 1 MWQIIDI--RQHCLY--KSLRAGHSSICSSVQFIPW--------------KPWEVISGGLD------SKLVMWDFSKGRP 56 (250)
Q Consensus 1 ti~iwd~--~~~~~~--~~l~~~h~~~v~~l~~~~~--------------~~~~l~s~s~d------g~v~iwd~~~~~~ 56 (250)
+|+|||+ .+++.+ ..+. +|...+..+++++. +. .++.++.+ ++|++||+.. ..
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~-~l~~~s~~~~~~~~~~i~i~d~~g-~~ 170 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGAFRT-RIAYVVQTNGGQFPYELRVSDYDG-YN 170 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCCTTC-EEEEEEECSSSSCCEEEEEEETTS-CS
T ss_pred EEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCcCCC-EEEEEEecCCCCccceEEEEcCCC-CC
Confidence 4799999 898877 4588 99998988887751 44 45555543 7999999974 44
Q ss_pred ccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC---eEEEEeCCCceeEeeccCCCCCCcccee
Q 025649 57 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESELNISRSKSTTKPLKGSQS 133 (250)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 133 (250)
...+.. +...+.+++|+| ++++|++++.++ .|++||+++++...... ....+.+++
T Consensus 171 ~~~l~~-------------~~~~v~~~~~Sp------dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~--~~~~~~~~~ 229 (415)
T 2hqs_A 171 QFVVHR-------------SPQPLMSPAWSP------DGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPA 229 (415)
T ss_dssp CEEEEE-------------ESSCEEEEEECT------TSSEEEEEECTTSSCEEEEEETTTCCEEEEEC--CSSCEEEEE
T ss_pred CEEEeC-------------CCCcceeeEEcC------CCCEEEEEEecCCCcEEEEEECCCCcEEEeec--CCCcccCEE
Confidence 444442 467899999999 999999999875 99999999887654322 235788999
Q ss_pred ecccceeEEEeeeee----ec--cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeC-CC--eEEEEecCCCccee
Q 025649 134 TSKVNIRDAEMEILD----QS--GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DK--LVKVWDCSRFQGVQ 204 (250)
Q Consensus 134 ~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~ 204 (250)
|+|||+.++..+..+ .. +....+ ...+..|...+.+++|+ |+|++|++++. ++ .|++||+.++.
T Consensus 230 ~spdg~~la~~~~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~s---pdg~~l~~~s~~~g~~~i~~~d~~~~~--- 302 (415)
T 2hqs_A 230 FSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWF---PDSQNLAFTSDQAGRPQVYKVNINGGA--- 302 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEEC---TTSSEEEEEECTTSSCEEEEEETTSSC---
T ss_pred EcCCCCEEEEEEecCCCceEEEEECCCCC-EEeCcCCCCcccceEEC---CCCCEEEEEECCCCCcEEEEEECCCCC---
Confidence 999999887433211 11 111222 24566788889999999 89999888876 44 68888988862
Q ss_pred cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC---ceEEEEeCC
Q 025649 205 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS---KVVKVYSIS 250 (250)
Q Consensus 205 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~vw~~~ 250 (250)
. .....+...+..++|+| +|++|++++.+ ..|++||+.
T Consensus 303 ------~-~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~ 343 (415)
T 2hqs_A 303 ------P-QRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLA 343 (415)
T ss_dssp ------C-EECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETT
T ss_pred ------E-EEEecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECC
Confidence 2 23445667888999998 89988887754 689999973
No 130
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=2e-21 Score=146.86 Aligned_cols=218 Identities=10% Similarity=0.052 Sum_probs=154.3
Q ss_pred CcEEEEcccceeeeeeccCCCC-CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSS-ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~-~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+|++||+.+++.+..+..++.. .+..++|+|+++.++++++.++.|.+||+.+++.+..+..+.+. .+...
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--------~~~~~ 83 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--------ERVKS 83 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--------EEEEC
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc--------ccccc
Confidence 4789999999998888722322 58899999999855677888899999999999887777643000 00114
Q ss_pred eeEEecCCCcccCCCCCEEEEEe------------CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---
Q 025649 80 VHAIAIPDADMLDKTNKICVVAK------------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM--- 144 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 144 (250)
+.+++|+| ++++++++. .++.|.+||+.+++....+... ..+..++|+|+|++++..
T Consensus 84 ~~~~~~s~------dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~ 155 (337)
T 1pby_B 84 LFGAALSP------DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGLGRD 155 (337)
T ss_dssp TTCEEECT------TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEESSS
T ss_pred ccceEECC------CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCCCEEEEeCCe
Confidence 67889998 999888886 5799999999988776655543 467789999999877642
Q ss_pred -eeeeeccCeeeeee---------------------------------------------------c------------c
Q 025649 145 -EILDQSGGKRLHLD---------------------------------------------------Y------------S 160 (250)
Q Consensus 145 -~~~~~~~~~~~~~~---------------------------------------------------~------------~ 160 (250)
..++.........+ . .
T Consensus 156 i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 235 (337)
T 1pby_B 156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence 12222111110000 0 0
Q ss_pred ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC
Q 025649 161 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT 240 (250)
Q Consensus 161 ~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 240 (250)
+..+...+.+++|+ |+|++++++ ++.|.+||+.++ +.+... .....+.+++|+| ++++|++++.
T Consensus 236 ~~~~~~~~~~~~~s---~dg~~l~~~--~~~v~~~d~~~~---------~~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~ 299 (337)
T 1pby_B 236 VRIMDVFYFSTAVN---PAKTRAFGA--YNVLESFDLEKN---------ASIKRV-PLPHSYYSVNVST-DGSTVWLGGA 299 (337)
T ss_dssp EEECSSCEEEEEEC---TTSSEEEEE--ESEEEEEETTTT---------EEEEEE-ECSSCCCEEEECT-TSCEEEEESB
T ss_pred cCCCCCceeeEEEC---CCCCEEEEe--CCeEEEEECCCC---------cCccee-cCCCceeeEEECC-CCCEEEEEcC
Confidence 11122345678999 899998888 799999999987 333332 2345678899998 8888888889
Q ss_pred CceEEEEeCC
Q 025649 241 SKVVKVYSIS 250 (250)
Q Consensus 241 d~~i~vw~~~ 250 (250)
++.|++||+.
T Consensus 300 ~~~i~v~d~~ 309 (337)
T 1pby_B 300 LGDLAAYDAE 309 (337)
T ss_dssp SSEEEEEETT
T ss_pred CCcEEEEECc
Confidence 9999999973
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.7e-21 Score=147.14 Aligned_cols=215 Identities=8% Similarity=0.020 Sum_probs=150.2
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+|++||+++++.+..+. .+...+ .++|+|+++.+++++..++.|.+||+.+++. ...+..+ ...
T Consensus 21 ~v~~~d~~~~~~~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------~~~ 85 (331)
T 3u4y_A 21 RISFFSTDTLEILNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG-------------QSS 85 (331)
T ss_dssp EEEEEETTTCCEEEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC-------------SSC
T ss_pred eEEEEeCcccceeeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC-------------CCC
Confidence 47899999999988888 666677 9999999984455555589999999998887 5555533 233
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCC---eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec-cC---
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS-GG--- 152 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 152 (250)
..+++++| ++++++++..++ .|.+||+.+++........ .....++|+|+|++++.....+.. ..
T Consensus 86 ~~~~~~s~------dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 86 MADVDITP------DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--YDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp CCCEEECT------TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--TTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred ccceEECC------CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--CCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 44489998 999998665553 8999999998877665543 456899999999877643322111 10
Q ss_pred ----e-eeee-eccccCccccEEEEEeecCCCCCcEEE-EeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649 153 ----K-RLHL-DYSVGGHTAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 225 (250)
Q Consensus 153 ----~-~~~~-~~~~~~h~~~v~~~~~~p~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (250)
. .... ...+ .....+..++|+ |+|++++ ++..++.|.+||+.++... ..+... .....+..+
T Consensus 158 ~~~~g~~~~~~~~~~-~~~~~~~~~~~s---pdg~~l~v~~~~~~~v~v~d~~~~~~~------~~~~~~-~~~~~~~~~ 226 (331)
T 3u4y_A 158 IDADGVLFDTGQEFI-SGGTRPFNITFT---PDGNFAFVANLIGNSIGILETQNPENI------TLLNAV-GTNNLPGTI 226 (331)
T ss_dssp ECTTCCEEEEEEEEE-CSSSSEEEEEEC---TTSSEEEEEETTTTEEEEEECSSTTSC------EEEEEE-ECSSCCCCE
T ss_pred ECCCCcEeecCCccc-cCCCCccceEEC---CCCCEEEEEeCCCCeEEEEECCCCccc------ceeeec-cCCCCCceE
Confidence 0 0000 1122 233457899999 8998655 4556899999999987431 013333 244667889
Q ss_pred EecCCCCCeEEEe-eCCceEEEEeCC
Q 025649 226 CTTPTESENLVVC-DTSKVVKVYSIS 250 (250)
Q Consensus 226 ~~~~~~~~~l~s~-~~d~~i~vw~~~ 250 (250)
+|+| +|++++++ ..++.|.+||+.
T Consensus 227 ~~sp-dg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 227 VVSR-DGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp EECT-TSSEEEEECSSEEEEEEEETT
T ss_pred EECC-CCCEEEEEEcCCCEEEEEECC
Confidence 9998 88866554 457889999963
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=2.4e-21 Score=155.29 Aligned_cols=215 Identities=9% Similarity=0.043 Sum_probs=153.5
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEc--cCCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDF--SKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|.+||..+++++.++. .+.. +..++|+|+++ +|++++.|++|++||+ .+++.+..+..+ .
T Consensus 160 ~V~v~D~~t~~~~~~i~-~g~~-~~~v~~spdg~-~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g--------------~ 222 (543)
T 1nir_A 160 QIALVDGDSKKIVKVID-TGYA-VHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIKIG--------------I 222 (543)
T ss_dssp EEEEEETTTCCEEEEEE-CSTT-EEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEEEEEEECC--------------S
T ss_pred eEEEEECCCceEEEEEe-cCcc-cceEEECCCCC-EEEEECCCCeEEEEECcCCCCcEEEEEecC--------------C
Confidence 48899999999999998 4433 89999999999 8999999999999999 788877777633 5
Q ss_pred ceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCceeEeeccCC----------CCCCccceeecccceeEEEe---
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKST----------TKPLKGSQSTSKVNIRDAEM--- 144 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~--- 144 (250)
....++|+|.. ..+++++++++ .+++|.+||..+++.+..+... ....+..+.++|++..++..
T Consensus 223 ~p~~va~sp~~--~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 223 EARSVESSKFK--GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp EEEEEEECCST--TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CcceEEeCCCc--CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 67889998410 01789998887 4899999999998877665432 22367789999988776532
Q ss_pred ----eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEe-eCCCeEEEEecCCCcceecccccceeeeee---
Q 025649 145 ----EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG-GNDKLVKVWDCSRFQGVQTSINNDLLIKNI--- 216 (250)
Q Consensus 145 ----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--- 216 (250)
..++........ +..+ .+...+..+.|+ |+|++++++ ..+++|.+||+.+++ ++....
T Consensus 301 ~g~i~vvd~~~~~~l~-~~~i-~~~~~~~~~~~s---pdg~~l~va~~~~~~v~v~D~~tg~---------l~~~i~~g~ 366 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLT-VTSI-GAAPFLHDGGWD---SSHRYFMTAANNSNKVAVIDSKDRR---------LSALVDVGK 366 (543)
T ss_dssp TTEEEEEECTTSSSCE-EEEE-ECCSSCCCEEEC---TTSCEEEEEEGGGTEEEEEETTTTE---------EEEEEECSS
T ss_pred CCeEEEEEecCCCcce-eEEe-ccCcCccCceEC---CCCCEEEEEecCCCeEEEEECCCCe---------EEEeeccCC
Confidence 223332222111 1122 244567789999 899977655 458999999999984 333332
Q ss_pred -ccCCceeEEEecCCCCCeEEEee-CCceEEEEeC
Q 025649 217 -NLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI 249 (250)
Q Consensus 217 -~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~ 249 (250)
.|......+ ++|..+..++++. .|++|.+||+
T Consensus 367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence 355443333 4564477777775 6899999996
No 133
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=1.9e-21 Score=147.75 Aligned_cols=215 Identities=11% Similarity=0.000 Sum_probs=148.2
Q ss_pred CcEEEEcccceeeeeeccCCC-CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHS-SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+|++||+.+++.+..+. .+. ..+..++|+|+++.+++++..++.|.+||+.+++.+..+..+... ......
T Consensus 22 ~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~-------~~~~~~ 93 (349)
T 1jmx_B 22 NLHVVDVASDTVYKSCV-MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP-------GEVGRS 93 (349)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST-------TEEEEC
T ss_pred eEEEEECCCCcEEEEEe-cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc-------cccccc
Confidence 47899999999988887 443 267899999999845567778999999999988877766533000 000123
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCC------------CeEEEEeCCCceeEe---eccCCCCCCccceeecccceeEEE-
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGD------------GVVDVINIESELNIS---RSKSTTKPLKGSQSTSKVNIRDAE- 143 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d------------~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~- 143 (250)
+.+++|+| +++++++++.+ +.|.+||+.+++... ....+ ..+.+++|+|+|+.++.
T Consensus 94 ~~~~~~sp------dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~l~~~~ 165 (349)
T 1jmx_B 94 MYSFAISP------DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAADDGSLYVAG 165 (349)
T ss_dssp SSCEEECT------TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECTTSCEEEES
T ss_pred ccceEECC------CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC--CcccceeECCCCcEEEcc
Confidence 67889998 99999998865 899999998854332 22222 35788899999984432
Q ss_pred --eeeeeeccCeeeeeeccccC----------------------------------------------------------
Q 025649 144 --MEILDQSGGKRLHLDYSVGG---------------------------------------------------------- 163 (250)
Q Consensus 144 --~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 163 (250)
+..++....+ .+..+..
T Consensus 166 ~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 242 (349)
T 1jmx_B 166 PDIYKMDVKTGK---YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 242 (349)
T ss_dssp SSEEEECTTTCC---EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT
T ss_pred CcEEEEeCCCCc---eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccC
Confidence 1122221111 1111110
Q ss_pred ----------ccccEEEEEeecCCC-CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649 164 ----------HTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 164 ----------h~~~v~~~~~~p~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
+...+.+++|+ | ++++++++ ++.|.+||+.++ +.+.... ....+..++|+| ++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~s---p~dg~~l~~~--~~~v~~~d~~~~---------~~~~~~~-~~~~~~~~~~s~-dg 306 (349)
T 1jmx_B 243 GKTHTQEFADLTELYFTGLRS---PKDPNQIYGV--LNRLAKYDLKQR---------KLIKAAN-LDHTYYCVAFDK-KG 306 (349)
T ss_dssp CCEEEEEEEECSSCEEEEEEC---SSCTTEEEEE--ESEEEEEETTTT---------EEEEEEE-CSSCCCEEEECS-SS
T ss_pred CcEEecccccCCCcceeeEec---CCCCCEEEEE--cCeEEEEECccC---------eEEEEEc-CCCCccceEECC-CC
Confidence 11235567778 8 99998888 889999999987 3333322 334577899998 78
Q ss_pred CeEEEeeCCceEEEEeCC
Q 025649 233 ENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 233 ~~l~s~~~d~~i~vw~~~ 250 (250)
++|++++.++.|++||+.
T Consensus 307 ~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 307 DKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp SCEEEESBSSEEEEEETT
T ss_pred CEEEEecCCCeEEEEecc
Confidence 888888889999999973
No 134
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=2.7e-20 Score=141.53 Aligned_cols=227 Identities=12% Similarity=0.036 Sum_probs=147.1
Q ss_pred CcEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEec-CCCeEEEEEccC-CCC--ccceecCCCCCCCCCCcc
Q 025649 1 MWQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGG-LDSKLVMWDFSK-GRP--NKIVNFGLPENNGNAGQC 74 (250)
Q Consensus 1 ti~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s-~dg~v~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~ 74 (250)
+|++||+.+++ .+..+. .+...+..++|+|+++ +|++++ .++.|.+|++.. +.. +..+.... .... ..
T Consensus 64 ~v~~~~~~~g~~~~~~~~~-~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~--~~p~--~~ 137 (347)
T 3hfq_A 64 GIAAWQIDGQTAHKLNTVV-APGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDTVQHSG--HGPR--PE 137 (347)
T ss_dssp EEEEEEEETTEEEEEEEEE-EESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEEEECCC--CCSS--TT
T ss_pred eEEEEEecCCcEEEeeeee-cCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeecceeecCC--CCCC--cc
Confidence 37899997665 445555 6778899999999999 566665 789999999963 322 22222110 0000 01
Q ss_pred cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCC-CceeEe--eccCCCCCCccceeecccceeEEEee------
Q 025649 75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE-SELNIS--RSKSTTKPLKGSQSTSKVNIRDAEME------ 145 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------ 145 (250)
.....+++++|+| +++++++...++.|.+||+. +++... ............++|+|+|++++...
T Consensus 138 ~~~~~~~~~~~sp------dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v 211 (347)
T 3hfq_A 138 QDGSHIHYTDLTP------DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQI 211 (347)
T ss_dssp CSSCCEEEEEECT------TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred ccCCCceEEEECC------CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEE
Confidence 1224588899999 88877777778999999998 454332 22233334667899999999776422
Q ss_pred -eeeecc-CeeeeeeccccCc------cccEEEEEeecCCCCCcEE-EEeeCCCeEEEEecCCCcceecccccceeeeee
Q 025649 146 -ILDQSG-GKRLHLDYSVGGH------TAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 216 (250)
Q Consensus 146 -~~~~~~-~~~~~~~~~~~~h------~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 216 (250)
.++... ......+..+... ...+..++|+ |+|++| ++...++.|.+||+...... ..+....
T Consensus 212 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s---pdG~~l~v~~~~~~~v~v~~~~~~g~~------~~~~~~~ 282 (347)
T 3hfq_A 212 ASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS---HDGHFLYVSNRGYNTLAVFAVTADGHL------TLIQQIS 282 (347)
T ss_dssp EEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC---TTSCEEEEEEETTTEEEEEEECGGGCE------EEEEEEE
T ss_pred EEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC---CCCCEEEEEeCCCCEEEEEEECCCCcE------EEeEEEe
Confidence 222221 1111222222221 1458899999 899977 55566899999999742111 3344455
Q ss_pred ccCCceeEEEecCCCCCeEEEeeC-CceEEEEeC
Q 025649 217 NLNKKVNWLCTTPTESENLVVCDT-SKVVKVYSI 249 (250)
Q Consensus 217 ~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~vw~~ 249 (250)
.+...+..++|+| |+++|++++. ++.|.+|++
T Consensus 283 ~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 283 TEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp CSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEE
Confidence 5666788999998 8888887765 589999954
No 135
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=3.5e-22 Score=156.09 Aligned_cols=167 Identities=14% Similarity=0.083 Sum_probs=119.9
Q ss_pred CCCCeeeEEEcCCCCeEEE----EecCCCeEEEEEccCC--------CCccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649 20 HSSICSSVQFIPWKPWEVI----SGGLDSKLVMWDFSKG--------RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD 87 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~----s~s~dg~v~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 87 (250)
|...|.+++|+|+++ +|+ +|+.|++|++||++++ +.+..+.. ...|...|.+++|+|
T Consensus 91 ~~~~v~~l~~spdg~-~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~----------~~~h~~~V~~v~~~p 159 (434)
T 2oit_A 91 MKFPIHHLALSCDNL-TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL----------LKDAGGMVIDMKWNP 159 (434)
T ss_dssp CSSCEEEEEECTTSC-EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC----------CCSGGGSEEEEEECS
T ss_pred CCCcccEEEEcCCCC-EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec----------cCCCCCceEEEEECC
Confidence 567899999999999 787 8999999999999765 22212221 112577899999999
Q ss_pred CcccCCC-CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccc
Q 025649 88 ADMLDKT-NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA 166 (250)
Q Consensus 88 ~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 166 (250)
+ +++|++++.||+|++||++++... ....+|..
T Consensus 160 ------~~~~~las~s~Dg~v~iwD~~~~~~~----------------------------------------~~~~~~~~ 193 (434)
T 2oit_A 160 ------TVPSMVAVCLADGSIAVLQVTETVKV----------------------------------------CATLPSTV 193 (434)
T ss_dssp ------SCTTEEEEEETTSCEEEEEESSSEEE----------------------------------------EEEECGGG
T ss_pred ------CCCCEEEEEECCCeEEEEEcCCCcce----------------------------------------eeccCCCC
Confidence 6 889999999999999999865311 12345788
Q ss_pred cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE-eeCCc---
Q 025649 167 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV-CDTSK--- 242 (250)
Q Consensus 167 ~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d~--- 242 (250)
.|.+++|+ |+|++|++|+.||.|++||.+ +.......... .....|...|.+++|++ ++.++++ ++.||
T Consensus 194 ~v~~v~ws---pdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~--~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 194 AVTSVCWS---PKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPP--FYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLE 266 (434)
T ss_dssp CEEEEEEC---TTSSCEEEEETTSCEEEECTT-CCEEEEECCCT--TCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSS
T ss_pred ceeEEEEc---CCCCEEEEEcCCCcEEEEccC-CcccccccCCc--ccCCCCceeEEEEEEec-CceEEEEEccCCCccC
Confidence 99999999 899999999999999999998 32111000000 00012344899999997 6666544 33443
Q ss_pred ---eEEEEeCC
Q 025649 243 ---VVKVYSIS 250 (250)
Q Consensus 243 ---~i~vw~~~ 250 (250)
.+++|+++
T Consensus 267 ~~~~v~i~~l~ 277 (434)
T 2oit_A 267 TSPDVVMALLP 277 (434)
T ss_dssp SCCEEEEEECC
T ss_pred CCCceEEEEec
Confidence 38899874
No 136
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=2.7e-22 Score=156.68 Aligned_cols=180 Identities=10% Similarity=0.040 Sum_probs=127.9
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCC--CCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE--NNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
...++.+++++++. ++++++.|+ +++|+................ .........++..|.+++|+| ++++|
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp------dg~~l 107 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC------DNLTL 107 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT------TSCEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC------CCCEE
Confidence 44689999999998 899998887 899886432110000000000 000001112456799999999 99999
Q ss_pred E----EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEee
Q 025649 99 V----VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS 174 (250)
Q Consensus 99 ~----~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 174 (250)
+ +++.|+.|++||++++.... .. ..+....+..+.+|...|.+++|+
T Consensus 108 av~~~sgs~d~~v~iwd~~~~~~~~---~~--------------------------~~~~~~~~~~~~~h~~~V~~v~~~ 158 (434)
T 2oit_A 108 SACMMSSEYGSIIAFFDVRTFSNEA---KQ--------------------------QKRPFAYHKLLKDAGGMVIDMKWN 158 (434)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHCTT---CS--------------------------SCCCSEEEECCCSGGGSEEEEEEC
T ss_pred EEEEeccCCCceEEEEEccccccCC---cC--------------------------CcceeeeeeccCCCCCceEEEEEC
Confidence 9 78899999999997531000 00 000111234567899999999999
Q ss_pred cCCCC-CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 175 MFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 175 p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
|+ +++|++++.||+|++||++++ .......+|...|.+++|+| +|++|++|+.||.|++||++
T Consensus 159 ---p~~~~~las~s~Dg~v~iwD~~~~---------~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 159 ---PTVPSMVAVCLADGSIAVLQVTET---------VKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp ---SSCTTEEEEEETTSCEEEEEESSS---------EEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT
T ss_pred ---CCCCCEEEEEECCCeEEEEEcCCC---------cceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC
Confidence 65 789999999999999999987 33445567889999999998 79999999999999999974
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=1.8e-20 Score=141.89 Aligned_cols=217 Identities=9% Similarity=-0.002 Sum_probs=142.4
Q ss_pred CcEEEEcc--cce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC---CCCccceecCCCCCCCCCCc
Q 025649 1 MWQIIDIR--QHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK---GRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 1 ti~iwd~~--~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~ 73 (250)
+|++|++. +++ .+..+. .+. .+..++|+|+++.+++++..++.|.+||+.+ .+.+..+.
T Consensus 61 ~v~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------ 126 (343)
T 1ri6_A 61 RVLAYRIAPDDGALTFAAESA-LPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE------------ 126 (343)
T ss_dssp EEEEEEECTTTCCEEEEEEEE-CSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC------------
T ss_pred eEEEEEecCCCCceeeccccc-cCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc------------
Confidence 37899987 554 445565 444 7899999999994445555689999999953 33333333
Q ss_pred ccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCC-ceeEe----eccCCCCCCccceeecccceeEEEee--
Q 025649 74 CYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES-ELNIS----RSKSTTKPLKGSQSTSKVNIRDAEME-- 145 (250)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-- 145 (250)
....+.+++|+| +++++++++ .++.|.+||+.+ ++... .........+..++|+|++++++..+
T Consensus 127 --~~~~~~~~~~s~------dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~ 198 (343)
T 1ri6_A 127 --GLDGCHSANISP------DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 198 (343)
T ss_dssp --CCTTBCCCEECT------TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred --CCCCceEEEECC------CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC
Confidence 234578899998 898888777 899999999987 54432 22333345677899999999776432
Q ss_pred -----eeeecc-Cee---eeeeccccCc---cccEEEEEeecCCCCCcEEE-EeeCCCeEEEEecCCCcceeccccccee
Q 025649 146 -----ILDQSG-GKR---LHLDYSVGGH---TAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINNDLL 212 (250)
Q Consensus 146 -----~~~~~~-~~~---~~~~~~~~~h---~~~v~~~~~~p~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 212 (250)
.++... ... ......+... ...+..++|+ |+|++|+ ++..++.|.+||+...... ...+
T Consensus 199 ~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s---~dg~~l~v~~~~~~~i~v~d~~~~~~~-----~~~~ 270 (343)
T 1ri6_A 199 NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT---PDGRHLYACDRTASLITVFSVSEDGSV-----LSKE 270 (343)
T ss_dssp TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTSCC-----EEEE
T ss_pred CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC---CCCCEEEEEecCCCEEEEEEEcCCCCc-----eEEe
Confidence 233211 011 1122222211 3457789999 8988776 5557999999999831100 0233
Q ss_pred eeeeccCCceeEEEecCCCCCeEEEee-CCceEEEEeC
Q 025649 213 IKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI 249 (250)
Q Consensus 213 ~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~ 249 (250)
.....+.. +..++|+| ++++|++++ .++.|.+|++
T Consensus 271 ~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 271 GFQPTETQ-PRGFNVDH-SGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp EEEECSSS-CCCEEECT-TSSEEEEECTTTCEEEEEEE
T ss_pred eeecCCCc-cceEEECC-CCCEEEEecCCCCeEEEEEE
Confidence 33333333 88899998 888777776 6899999954
No 138
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=4.8e-21 Score=153.52 Aligned_cols=232 Identities=16% Similarity=0.123 Sum_probs=158.9
Q ss_pred CcEEEEc--ccceeeeeeccCCCCCeeeEEEcC----CCCeEEEEec-CCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649 1 MWQIIDI--RQHCLYKSLRAGHSSICSSVQFIP----WKPWEVISGG-LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 1 ti~iwd~--~~~~~~~~l~~~h~~~v~~l~~~~----~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 73 (250)
+|++||+ .+++.+.++. +...+..++|+| +|+ +|++++ .+++|.+||..+++++..+..... .....
T Consensus 201 ~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~---~~~~~ 274 (543)
T 1nir_A 201 RIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGM---TVDTQ 274 (543)
T ss_dssp EEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEE---CSSSC
T ss_pred eEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccccceeecccCc---ccCcc
Confidence 4899999 8999999998 455679999999 999 677776 589999999999998888764210 00011
Q ss_pred ccCCC-ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee----ee
Q 025649 74 CYNPA-FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI----LD 148 (250)
Q Consensus 74 ~~~~~-~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 148 (250)
.+|+. .+.++.++| ....++++...++.|.+||+.+.+.+..........+..+.|+|+|++++..+. ..
T Consensus 275 ~~~~~~~v~~i~~s~-----~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~ 349 (543)
T 1nir_A 275 TYHPEPRVAAIIASH-----EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVA 349 (543)
T ss_dssp CEESCCCEEEEEECS-----SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEE
T ss_pred ccccCCceEEEEECC-----CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEE
Confidence 12333 688899998 234456677789999999998765433111123466888999999998764221 11
Q ss_pred eccCeeeeeeccccC----ccccEEEEEeecCCCC-CcEEEEee-CCCeEEEEecCCCcceecccccceeeeeeccCCce
Q 025649 149 QSGGKRLHLDYSVGG----HTAAASCVAFSMFGER-GKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 222 (250)
Q Consensus 149 ~~~~~~~~~~~~~~~----h~~~v~~~~~~p~~~~-~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (250)
.++....+++..+.. |.+....+ ++ |+ +.+++++. .|++|.+||+.+.... ....+++..+..|...+
T Consensus 350 v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~---p~~g~~~~s~~~~d~~V~v~d~~~~~~~--~~~~~~v~~l~~~g~~~ 423 (543)
T 1nir_A 350 VIDSKDRRLSALVDVGKTPHPGRGANF-VH---PKYGPVWSTSHLGDGSISLIGTDPKNHP--QYAWKKVAELQGQGGGS 423 (543)
T ss_dssp EEETTTTEEEEEEECSSSBCCTTCEEE-EE---TTTEEEEEEEBSSSSEEEEEECCTTTCT--TTBTSEEEEEECSCSCC
T ss_pred EEECCCCeEEEeeccCCCCCCCCCccc-CC---CCCccEEEeccCCCceEEEEEeCCCCCc--hhcCeEEEEEEcCCCCc
Confidence 122223333344432 54433333 45 55 77777775 5899999999882110 00016677888898888
Q ss_pred eEEEecCCCCCeEEEee-------CCceEEEEeCC
Q 025649 223 NWLCTTPTESENLVVCD-------TSKVVKVYSIS 250 (250)
Q Consensus 223 ~~~~~~~~~~~~l~s~~-------~d~~i~vw~~~ 250 (250)
..+.++| ++++|++++ .+++|.|||+.
T Consensus 424 ~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 424 LFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp CCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred eEEEcCC-CCCcEEEecCCCCCcccCceEEEEECC
Confidence 9999998 899999987 27799999974
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=1.2e-19 Score=138.00 Aligned_cols=221 Identities=10% Similarity=0.002 Sum_probs=153.5
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|.+||..+++.+..+. . ...+..++|+|+++.++++...++.|.+||..+++.+..+..+.... .....+..+.
T Consensus 71 v~~~d~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 144 (353)
T 3vgz_A 71 VYRLDPVTLEVTQAIH-N-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR----TEEVRPLQPR 144 (353)
T ss_dssp EEEECTTTCCEEEEEE-E-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC----CSSCCCCEEE
T ss_pred EEEEcCCCCeEEEEEe-c-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc----ccccCCCCCc
Confidence 7899999999988887 3 44578999999998566677778999999999999888777541100 0011123468
Q ss_pred EEecCCCcccCCCCCEEEEEe--CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee------eeeeccCe
Q 025649 82 AIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGK 153 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 153 (250)
+++++| +++++++++ .++.|.+||+.+++....+... ...+..++++|+|+.++... .++.....
T Consensus 145 ~~~~s~------dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~ 217 (353)
T 3vgz_A 145 ELVADD------ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT-GKMSTGLALDSEGKRLYTTNADGELITIDTADNK 217 (353)
T ss_dssp EEEEET------TTTEEEEEEESSSCEEEEEETTTTEEEEEECCC-CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE
T ss_pred eEEECC------CCCEEEEEecCCCceEEEEcCCCCceEEEecCC-CCccceEEECCCCCEEEEEcCCCeEEEEECCCCe
Confidence 899998 888777776 4789999999998887766522 24578899999999887422 22222222
Q ss_pred eeeeecc-ccCccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649 154 RLHLDYS-VGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 231 (250)
Q Consensus 154 ~~~~~~~-~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 231 (250)
....+.. ..++...+.+++|+ |+|++++.++. ++.|.+||..+++ .+....... ...++|+| +
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~~v~~~d~~~~~---------~~~~~~~~~--~~~~~~s~-d 282 (353)
T 3vgz_A 218 ILSRKKLLDDGKEHFFINISLD---TARQRAFITDSKAAEVLVVDTRNGN---------ILAKVAAPE--SLAVLFNP-A 282 (353)
T ss_dssp EEEEEECCCSSSCCCEEEEEEE---TTTTEEEEEESSSSEEEEEETTTCC---------EEEEEECSS--CCCEEEET-T
T ss_pred EEEEEEcCCCCCCcccceEEEC---CCCCEEEEEeCCCCEEEEEECCCCc---------EEEEEEcCC--CceEEECC-C
Confidence 2211111 11355668889999 88887766654 5999999999873 333333222 25688997 7
Q ss_pred CCeEEE-eeCCceEEEEeCC
Q 025649 232 SENLVV-CDTSKVVKVYSIS 250 (250)
Q Consensus 232 ~~~l~s-~~~d~~i~vw~~~ 250 (250)
++++++ ...++.|.+||+.
T Consensus 283 g~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 283 RNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp TTEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEECCCCeEEEEECC
Confidence 775554 5579999999963
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=7.6e-20 Score=138.48 Aligned_cols=217 Identities=15% Similarity=0.131 Sum_probs=139.5
Q ss_pred CcEEEEcc-cc--eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC-CeEEEEEcc--CCCCc--cceecCCCCCCCCCC
Q 025649 1 MWQIIDIR-QH--CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD-SKLVMWDFS--KGRPN--KIVNFGLPENNGNAG 72 (250)
Q Consensus 1 ti~iwd~~-~~--~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d-g~v~iwd~~--~~~~~--~~~~~~~~~~~~~~~ 72 (250)
+|++||+. ++ +.+..+ .|...+.+++|+|+++ +|++++.+ +.|++|++. +++.. ..+..
T Consensus 16 ~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------- 82 (343)
T 1ri6_A 16 QIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDDGALTFAAESAL---------- 82 (343)
T ss_dssp EEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEEC----------
T ss_pred eEEEEEECCCCcEEEeeeE--ecCCCCceEEECCCCC-EEEEeecCCCeEEEEEecCCCCceeecccccc----------
Confidence 47899985 33 334444 4778899999999999 67776665 999999997 44432 23331
Q ss_pred cccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCC---CceeEeeccCCCCCCccceeecccceeEEEee---
Q 025649 73 QCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIE---SELNISRSKSTTKPLKGSQSTSKVNIRDAEME--- 145 (250)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 145 (250)
...+..++|+| ++++|++++ .++.|.+||+. .......... ...+.+++|+|+|++++...
T Consensus 83 ----~~~~~~~~~s~------dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~ 150 (343)
T 1ri6_A 83 ----PGSLTHISTDH------QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--LDGCHSANISPDNRTLWVPALKQ 150 (343)
T ss_dssp ----SSCCSEEEECT------TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC--CTTBCCCEECTTSSEEEEEEGGG
T ss_pred ----CCCCcEEEEcC------CCCEEEEEecCCCeEEEEECCCCccccccccccC--CCCceEEEECCCCCEEEEecCCC
Confidence 23678899998 899776665 48899999994 3333333332 25688999999998877433
Q ss_pred ----eeeeccCeeeeeec--cccC-ccccEEEEEeecCCCCCcEEEEe-eCCCeEEEEecCC--Ccceecccccceeeee
Q 025649 146 ----ILDQSGGKRLHLDY--SVGG-HTAAASCVAFSMFGERGKYLISG-GNDKLVKVWDCSR--FQGVQTSINNDLLIKN 215 (250)
Q Consensus 146 ----~~~~~~~~~~~~~~--~~~~-h~~~v~~~~~~p~~~~~~~l~s~-~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~ 215 (250)
.++........... .+.. ....+.+++|+ |++++++.+ ..++.|.+||+.. +..... ......
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~----~~~~~~ 223 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH---PNEQYAYCVNELNSSVDVWELKDPHGNIECV----QTLDMM 223 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC---TTSSEEEEEETTTTEEEEEESSCTTSCCEEE----EEEECS
T ss_pred CEEEEEEecCCCceeeecccccccCCCCCcceEEEC---CCCCEEEEEeCCCCEEEEEEecCCCCcEEEE----eecccc
Confidence 23332211111111 1222 23467889999 899876554 4789999999964 311100 111111
Q ss_pred e-cc--CCceeEEEecCCCCCeEE-EeeCCceEEEEeCC
Q 025649 216 I-NL--NKKVNWLCTTPTESENLV-VCDTSKVVKVYSIS 250 (250)
Q Consensus 216 ~-~~--~~~v~~~~~~~~~~~~l~-s~~~d~~i~vw~~~ 250 (250)
. ++ ...+..++|+| ++++|+ ++..++.|.+|++.
T Consensus 224 ~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 224 PENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp CTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred CccccccCCccceEECC-CCCEEEEEecCCCEEEEEEEc
Confidence 1 11 23566899998 777766 55579999999963
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=1.6e-20 Score=156.28 Aligned_cols=211 Identities=10% Similarity=0.002 Sum_probs=147.0
Q ss_pred CcEEEEcccceeeeeeccCCCC------------------------CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC-
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSS------------------------ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR- 55 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~------------------------~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~- 55 (250)
+|++||+.+++....+. .+.. .|.+++|+|||+ +|++++. +.|.+||+.++.
T Consensus 65 ~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~ 141 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVD-SKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ-RLLFPLG-GELYLYDLKQEGK 141 (741)
T ss_dssp EEEEEETTTCCEEEEEC-GGGTC--------------------CCEESCCCEECTTSS-EEEEEET-TEEEEEESSSCST
T ss_pred EEEEEECCCCceeEccc-hhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC-EEEEEeC-CcEEEEECCCCCc
Confidence 37899999998877766 4433 389999999999 7887776 999999998872
Q ss_pred -CccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCC-------
Q 025649 56 -PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP------- 127 (250)
Q Consensus 56 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~------- 127 (250)
....+. . +...+..++|+| +|++|+.++. +.|++||+.+++...........
T Consensus 142 ~~~~~l~-~------------~~~~~~~~~~SP------DG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~ 201 (741)
T 2ecf_A 142 AAVRQLT-H------------GEGFATDAKLSP------KGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAE 201 (741)
T ss_dssp TSCCBCC-C------------SSSCEEEEEECT------TSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCC
T ss_pred ceEEEcc-c------------CCcccccccCCC------CCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccc
Confidence 223332 1 346789999999 9999998874 68999999987765443332211
Q ss_pred --------CccceeecccceeEEEeeeeee-----------------------------------c--cCee-eeeeccc
Q 025649 128 --------LKGSQSTSKVNIRDAEMEILDQ-----------------------------------S--GGKR-LHLDYSV 161 (250)
Q Consensus 128 --------~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~--~~~~-~~~~~~~ 161 (250)
.+..+.|+|||+.++... .+. . +... .+.....
T Consensus 202 ~v~~~~~~~~~~~~~SpDg~~l~~~~-~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~ 280 (741)
T 2ecf_A 202 FVADEEMDRHTGYWWAPDDSAIAYAR-IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWID 280 (741)
T ss_dssp HHHHHHSCCCCSEEECTTSSCEEEEE-EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEEC
T ss_pred eeeeeccccccceEECCCCCEEEEEE-EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEec
Confidence 147899999999998532 221 0 1111 1111111
Q ss_pred --cCccccEEEEEeecCCCCCcEEEEeeC-----CCeEEEEecCCCcceecccccceeeeeeccCC----ceeEEEecCC
Q 025649 162 --GGHTAAASCVAFSMFGERGKYLISGGN-----DKLVKVWDCSRFQGVQTSINNDLLIKNINLNK----KVNWLCTTPT 230 (250)
Q Consensus 162 --~~h~~~v~~~~~~p~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~ 230 (250)
..|...+..++| | +|++|+.++. +..|++||+.++. .......+.. .+..++|+|
T Consensus 281 ~~~~~~~~~~~~~~-p---Dg~~l~~~~~~~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~~~~~~~~sp- 346 (741)
T 2ecf_A 281 LGKEQDIYLARVNW-R---DPQHLSFQRQSRDQKKLDLVEVTLASNQ---------QRVLAHETSPTWVPLHNSLRFLD- 346 (741)
T ss_dssp CCSCSSEEEEEEEE-E---ETTEEEEEEEETTSSEEEEEEEETTTCC---------EEEEEEEECSSCCCCCSCCEECT-
T ss_pred CCCCcceEEEEEEe-C---CCCEEEEEEecccCCeEEEEEEECCCCc---------eEEEEEcCCCCcCCcCCceEECC-
Confidence 146677888888 6 7888886653 5689999999873 3333333332 456789998
Q ss_pred CCCeEEEeeCCceEEEEeC
Q 025649 231 ESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 231 ~~~~l~s~~~d~~i~vw~~ 249 (250)
||+++++++.||.++||.+
T Consensus 347 dg~~~~~~~~~g~~~l~~~ 365 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRI 365 (741)
T ss_dssp TSCEEEEECTTSSCEEEEE
T ss_pred CCeEEEEecCCCccEEEEE
Confidence 8888889999998888764
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1e-20 Score=140.25 Aligned_cols=205 Identities=10% Similarity=-0.046 Sum_probs=143.1
Q ss_pred cEEEEccc-ceeeeeeccCC-CCCeeeEEEcCCCCeEEEEec--CCCeEEEEEc--cCCCCccceecCCCCCCCCCCccc
Q 025649 2 WQIIDIRQ-HCLYKSLRAGH-SSICSSVQFIPWKPWEVISGG--LDSKLVMWDF--SKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 2 i~iwd~~~-~~~~~~l~~~h-~~~v~~l~~~~~~~~~l~s~s--~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
|++||+.+ ++....+. +| ...+.+++|+|+++ +|++++ .++..+||.+ .+++ ...+.
T Consensus 64 i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~-------------- 126 (297)
T 2ojh_A 64 LYRLSLAGDPSPEKVDT-GFATICNNDHGISPDGA-LYAISDKVEFGKSAIYLLPSTGGT-PRLMT-------------- 126 (297)
T ss_dssp EEEEESSSCCSCEECCC-TTCCCBCSCCEECTTSS-EEEEEECTTTSSCEEEEEETTCCC-CEECC--------------
T ss_pred EEEEeCCCCCCceEecc-ccccccccceEECCCCC-EEEEEEeCCCCcceEEEEECCCCc-eEEee--------------
Confidence 78999998 88777776 55 47899999999999 788877 3455566655 4443 33333
Q ss_pred CCCceeEEecCCCcccCCCCCEEE-EEeCCCeEEEEeCC--CceeEeeccCCCCCCccceeecccceeEEEeeeeee---
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVINIE--SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ--- 149 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 149 (250)
....+..++|+| ++++|+ ++..++.+++|+++ ++... .+ ......+.++.|+|+|+.++..+..+.
T Consensus 127 ~~~~~~~~~~sp------dg~~l~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 198 (297)
T 2ojh_A 127 KNLPSYWHGWSP------DGKSFTYCGIRDQVFDIYSMDIDSGVET-RL-THGEGRNDGPDYSPDGRWIYFNSSRTGQMQ 198 (297)
T ss_dssp SSSSEEEEEECT------TSSEEEEEEEETTEEEEEEEETTTCCEE-EC-CCSSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred cCCCccceEECC------CCCEEEEEECCCCceEEEEEECCCCcce-Ec-ccCCCccccceECCCCCEEEEEecCCCCcc
Confidence 123488899998 888777 77889999999864 33332 22 223367889999999998874332111
Q ss_pred -ccCe-eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC-----------CeEEEEecCCCcceecccccceeeeee
Q 025649 150 -SGGK-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-----------KLVKVWDCSRFQGVQTSINNDLLIKNI 216 (250)
Q Consensus 150 -~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~ 216 (250)
+... .......+..|...+.+++|+ |+|++|++++.+ +.|++||+.+++. ..+....
T Consensus 199 i~~~~~~~~~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-------~~~~~~~ 268 (297)
T 2ojh_A 199 IWRVRVDGSSVERITDSAYGDWFPHPS---PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-------ETLFDLF 268 (297)
T ss_dssp EEEEETTSSCEEECCCCSEEEEEEEEC---TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-------EEEEEEE
T ss_pred EEEECCCCCCcEEEecCCcccCCeEEC---CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-------eeeeccC
Confidence 1111 122334566777889999999 899999888765 5699999988632 2233445
Q ss_pred ccCCceeEEEecCCCCCeEEEeeCCc
Q 025649 217 NLNKKVNWLCTTPTESENLVVCDTSK 242 (250)
Q Consensus 217 ~~~~~v~~~~~~~~~~~~l~s~~~d~ 242 (250)
+|...+..++|+| +++.|++++.+.
T Consensus 269 ~~~~~~~~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 269 GGQGTMNSPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp ESTTTSCSCCBCT-TSSEEEEEEECC
T ss_pred CCCcccccceECC-CCCEEEEEEecc
Confidence 7888899999998 888888776543
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=8.6e-20 Score=137.78 Aligned_cols=216 Identities=12% Similarity=0.040 Sum_probs=145.2
Q ss_pred CcEEEEccccee-eeeeccCCCCCeeeEEEcCCCCeEEEEecCCC---eEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649 1 MWQIIDIRQHCL-YKSLRAGHSSICSSVQFIPWKPWEVISGGLDS---KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 1 ti~iwd~~~~~~-~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
+|.+||+.+++. ...+. .+..+..+++|+|+++ +|+++..++ .|.+||+.+++.+..+..+
T Consensus 63 ~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~------------- 127 (331)
T 3u4y_A 63 TLVQIETQLEPPKVVAIQ-EGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP------------- 127 (331)
T ss_dssp EEEEEECSSSSCEEEEEE-ECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTEEEEEEECC-------------
T ss_pred eEEEEECCCCceeEEecc-cCCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCCeEEEEECC-------------
Confidence 378999999988 77777 6777766699999999 677655553 9999999998887777633
Q ss_pred CCceeEEecCCCcccCCCCCEEEEE-eCCCe-EEEEeCCCceeEee---ccCCCCCCccceeecccceeEEEee------
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVA-KGDGV-VDVINIESELNISR---SKSTTKPLKGSQSTSKVNIRDAEME------ 145 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~-~~d~~-i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------ 145 (250)
....+++|+| ++++++++ ..++. |.+|++........ ...........++|+|+|++++...
T Consensus 128 -~~~~~~~~sp------dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 200 (331)
T 3u4y_A 128 -YDAVGIAISP------NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSI 200 (331)
T ss_dssp -TTEEEEEECT------TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred -CCccceEECC------CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeE
Confidence 4568999999 88755555 55578 99999875332211 1112235578899999998765322
Q ss_pred -eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCcceecccccceeeeeec----cC
Q 025649 146 -ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNIN----LN 219 (250)
Q Consensus 146 -~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~ 219 (250)
.++.......+.+..+..+ ..+..++|+ |+|++++.++ .++.|.+||+.+++... +..... +.
T Consensus 201 ~v~d~~~~~~~~~~~~~~~~-~~~~~~~~s---pdg~~l~v~~~~~~~i~~~d~~~~~~~~-------~~~~~~~~~~~~ 269 (331)
T 3u4y_A 201 GILETQNPENITLLNAVGTN-NLPGTIVVS---RDGSTVYVLTESTVDVFNFNQLSGTLSF-------VKSFGHGLLIDP 269 (331)
T ss_dssp EEEECSSTTSCEEEEEEECS-SCCCCEEEC---TTSSEEEEECSSEEEEEEEETTTTEEEE-------EEEEECCCCCCC
T ss_pred EEEECCCCcccceeeeccCC-CCCceEEEC---CCCCEEEEEEcCCCEEEEEECCCCceee-------ecccccccccCC
Confidence 2333322221114444433 556789999 8999766554 57899999999874311 111111 12
Q ss_pred Cc---eeEEEecCCCCCeEEE-eeCCceEEEEeCC
Q 025649 220 KK---VNWLCTTPTESENLVV-CDTSKVVKVYSIS 250 (250)
Q Consensus 220 ~~---v~~~~~~~~~~~~l~s-~~~d~~i~vw~~~ 250 (250)
.. ...++|+| |+++|++ +..++.|.+||+.
T Consensus 270 ~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 270 RPLFGANQMALNK-TETKLFISANISRELKVFTIS 303 (331)
T ss_dssp GGGTTCCCEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred CCcccccceEECC-CCCEEEEecCCCCcEEEEEec
Confidence 22 35589998 8887755 5557799999974
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=6.2e-20 Score=152.36 Aligned_cols=215 Identities=10% Similarity=-0.023 Sum_probs=145.6
Q ss_pred CcEEEEcccceeeeeeccCCCC---CeeeEEEcCCCCeEEEEecCC---------CeEEEEEccCCCCccceecCCCCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSS---ICSSVQFIPWKPWEVISGGLD---------SKLVMWDFSKGRPNKIVNFGLPENN 68 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~---~v~~l~~~~~~~~~l~s~s~d---------g~v~iwd~~~~~~~~~~~~~~~~~~ 68 (250)
+|++||+.+++....+. +|.. .|.+++|||||+ +|++++.+ +.+.+||+.+++. ..+...
T Consensus 38 ~i~~~d~~~g~~~~~~~-~~~~~~~~v~~~~~SpDg~-~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~----- 109 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIE-GKKIESLRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPP----- 109 (723)
T ss_dssp CEEEBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCT-----
T ss_pred CEEEEECCCCcEEEEec-cccccccccceEEECCCCC-EEEEEecCccceeecceeeEEEEECCCCce-EeccCC-----
Confidence 58999999999888887 7765 499999999999 78888664 7889999998875 223211
Q ss_pred CCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCC-----------------Cccc
Q 025649 69 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP-----------------LKGS 131 (250)
Q Consensus 69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------------~~~~ 131 (250)
..+...+..++|+| +|+.|+.++. +.|++||+.+++........... .+..
T Consensus 110 -----~~~~~~~~~~~~SP------dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 110 -----EVSNAKLQYAGWGP------KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp -----TCCSCCCSBCCBCS------STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred -----ccccccccccEECC------CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence 01233478899999 9999999876 79999999987765443332111 2367
Q ss_pred eeecccceeEEEeeeeee-------------------------------------ccCeeeeeeccccC------ccccE
Q 025649 132 QSTSKVNIRDAEMEILDQ-------------------------------------SGGKRLHLDYSVGG------HTAAA 168 (250)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~------h~~~v 168 (250)
++|+|||+.++.....+. ++....+....+.. +...+
T Consensus 178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~ 257 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI 257 (723)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred EEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcccee
Confidence 999999999985332110 00111111122333 25678
Q ss_pred EEEEeecCCCCCcEEEEeeC----CCeEEEEecCCCcceecccccceeeeee-ccCCce----eEEEecCCCCCeEEE--
Q 025649 169 SCVAFSMFGERGKYLISGGN----DKLVKVWDCSRFQGVQTSINNDLLIKNI-NLNKKV----NWLCTTPTESENLVV-- 237 (250)
Q Consensus 169 ~~~~~~p~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v----~~~~~~~~~~~~l~s-- 237 (250)
.+++|+ |+|+++++.+. +..|++||+.+++ ...... .+...+ ..++|+| ||+.|+.
T Consensus 258 ~~~~~S---pDg~~l~~~~~~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~ 324 (723)
T 1xfd_A 258 TMVKWA---TSTKVAVTWLNRAQNVSILTLCDATTGV---------CTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIR 324 (723)
T ss_dssp EEEEES---SSSEEEEEEEETTSCEEEEEEEETTTCC---------EEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEE
T ss_pred EEEEEe---CCCeEEEEEEcCCCCeEEEEEEeCCCCc---------ceEEEEeccCCEEeccCCCceEcC-CCCeEEEEE
Confidence 999999 89998877643 3589999999873 222222 233333 3788998 8887664
Q ss_pred eeCCc------eEEEEe
Q 025649 238 CDTSK------VVKVYS 248 (250)
Q Consensus 238 ~~~d~------~i~vw~ 248 (250)
+..++ .|.+||
T Consensus 325 ~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 325 AIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EECCSSSSCEEEEEEEC
T ss_pred ecccCCCcceeEEEEEe
Confidence 45677 566666
No 145
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=4.2e-20 Score=153.34 Aligned_cols=216 Identities=8% Similarity=-0.042 Sum_probs=143.0
Q ss_pred CcEEEEcccceeeeeeccCCCC---CeeeEEEcCCCCeEEEEecC---------CCeEEEEEccCCCCccceecCCCCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSS---ICSSVQFIPWKPWEVISGGL---------DSKLVMWDFSKGRPNKIVNFGLPENN 68 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~---~v~~l~~~~~~~~~l~s~s~---------dg~v~iwd~~~~~~~~~~~~~~~~~~ 68 (250)
+|++||+.+++....+. +|.. .+.+++|||||+ +|++++. ++.|++||+.+++.+.....
T Consensus 37 ~i~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l------ 108 (719)
T 1z68_A 37 NIVLYNIETGQSYTILS-NRTMKSVNASNYGLSPDRQ-FVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL------ 108 (719)
T ss_dssp CEEEEESSSCCEEEEEC-HHHHHTTTCSEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC------
T ss_pred CEEEEEcCCCcEEEEEc-cccccccceeeEEECCCCC-eEEEEecCceeEEeecceEEEEEECCCCccccceec------
Confidence 58999999999877776 5543 489999999999 7888766 78999999998876321221
Q ss_pred CCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCC-----------------Cccc
Q 025649 69 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP-----------------LKGS 131 (250)
Q Consensus 69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------------~~~~ 131 (250)
...+..++|+| +|+.|+.+. ++.|++||+.+++........... ....
T Consensus 109 --------~~~~~~~~~SP------DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 109 --------PRPIQYLCWSP------VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp --------CSSBCCEEECS------STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred --------CcccccceECC------CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 13578899999 999999885 789999999887765432222111 1258
Q ss_pred eeecccceeEEEeeeeee-------------------------------------ccCeeeeee--------ccccCccc
Q 025649 132 QSTSKVNIRDAEMEILDQ-------------------------------------SGGKRLHLD--------YSVGGHTA 166 (250)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~--------~~~~~h~~ 166 (250)
++|+|||+.++.....+. ++....+.. ..+.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 999999999985332210 011111110 12346778
Q ss_pred cEEEEEeecCCCCCcEEEEeeCC----CeEEEEe----cCCCcceecccccceee-eeeccCCcee-----EEEecCCCC
Q 025649 167 AASCVAFSMFGERGKYLISGGND----KLVKVWD----CSRFQGVQTSINNDLLI-KNINLNKKVN-----WLCTTPTES 232 (250)
Q Consensus 167 ~v~~~~~~p~~~~~~~l~s~~~d----~~i~iwd----~~~~~~~~~~~~~~~~~-~~~~~~~~v~-----~~~~~~~~~ 232 (250)
.+..++|+ |+++++++.... ..|.+|| ..+++.. .... ....|...+. .+.|+| ||
T Consensus 254 ~~~~~~~S---pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~sp-dg 323 (719)
T 1z68_A 254 YFSWLTWV---TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP------KTQEHIEESRTGWAGGFFVSTPVFSY-DA 323 (719)
T ss_dssp EEEEEEES---SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC------GGGEEEEECSSSCSSSSSCCCCEECT-TS
T ss_pred eEEEeEEe---CCCeEEEEEeccccCeEEEEEEcccCCCCCCceE------EEEecccccCCceEccccCCccEECC-CC
Confidence 89999999 888887774422 2488899 7766322 1110 0135666665 788998 78
Q ss_pred CeEEE--eeCCc--eEEEEeC
Q 025649 233 ENLVV--CDTSK--VVKVYSI 249 (250)
Q Consensus 233 ~~l~s--~~~d~--~i~vw~~ 249 (250)
+.|+. +..+| .|.+||+
T Consensus 324 ~~l~~~~~~~~g~~~l~~~~~ 344 (719)
T 1z68_A 324 ISYYKIFSDKDGYKHIHYIKD 344 (719)
T ss_dssp SCEEEEEECTTSCEEEEEESS
T ss_pred CeEEEEEEccCCceEEEEEEC
Confidence 75543 44555 4555554
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.84 E-value=2e-19 Score=148.98 Aligned_cols=225 Identities=11% Similarity=0.022 Sum_probs=146.5
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-----CCCccceecCCCCCC-CCCCcc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-----GRPNKIVNFGLPENN-GNAGQC 74 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~~~~~~-~~~~~~ 74 (250)
+|++||+.+++... +. .+...+.+++|+|+|+ .|+++ .|+.|++||+.+ ++.......+..... ......
T Consensus 102 ~i~~~d~~~~~~~~-l~-~~~~~~~~~~~SpdG~-~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 102 GLVGFDMLARKVTY-LF-DTNEETASLDFSPVGD-RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ 177 (706)
T ss_dssp EEEEEETTTTEEEE-EE-CCTTCCTTCEECTTSS-EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred EEEEEECCCCceEE-cc-CCcccccCCcCCCCCC-EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence 47899999887754 44 5778899999999999 77774 679999999998 766544332200000 000000
Q ss_pred cCCCceeEEecCCCcccCCCCCEEEEEe---------------------------------CCCeEEEEeCCCceeEeec
Q 025649 75 YNPAFVHAIAIPDADMLDKTNKICVVAK---------------------------------GDGVVDVINIESELNISRS 121 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~---------------------------------~d~~i~~~d~~~~~~~~~~ 121 (250)
-+...+.++.|+| ++++|++++ .+..|.+||+.+++.....
T Consensus 178 ee~~~~~~~~~Sp------Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 178 REFGIEKGTFWSP------KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp GCTTCCCSEEECT------TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred hhcCCCceEEECC------CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 0112358899999 999999987 4578999999988765443
Q ss_pred cC-CCCCCccceeecccceeEEEeee-----------eeeccCeeeeeeccccCcc---ccEEEEEeecCCC--CCcEEE
Q 025649 122 KS-TTKPLKGSQSTSKVNIRDAEMEI-----------LDQSGGKRLHLDYSVGGHT---AAASCVAFSMFGE--RGKYLI 184 (250)
Q Consensus 122 ~~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~--~~~~l~ 184 (250)
.. .....+..++|+|||+.++.... ++.........+.. ..+. ..+.+++|+ | +|++++
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~~s---p~~dg~~l~ 327 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV-ETDKHYVEPLHPLTFL---PGSNNQFIW 327 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE-EECSSCCCCCSCCEEC---TTCSSEEEE
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE-ccCCCeECccCCceee---cCCCCEEEE
Confidence 22 33456889999999998874221 11111111111111 1111 123567899 8 999999
Q ss_pred EeeCCCeEEEEecC-CCcceecccccceeeeeeccCCceeE-EEecCCCCCeEEE-eeCCc----eEEEEeC
Q 025649 185 SGGNDKLVKVWDCS-RFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTESENLVV-CDTSK----VVKVYSI 249 (250)
Q Consensus 185 s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s-~~~d~----~i~vw~~ 249 (250)
+++.|+.++||++. .+ ..+..+..+...+.. ++|+| +++.|+. ++.++ .|..||+
T Consensus 328 ~~~~~g~~~l~~~~~~~---------~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 328 QSRRDGWNHLYLYDTTG---------RLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp EECTTSSCEEEEEETTS---------CEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEET
T ss_pred EEccCCccEEEEEECCC---------CEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEc
Confidence 99999999999876 33 334455667777776 78987 7776655 44444 5666664
No 147
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.84 E-value=1.6e-19 Score=150.28 Aligned_cols=221 Identities=10% Similarity=-0.008 Sum_probs=147.0
Q ss_pred CcEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC--
Q 025649 1 MWQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN-- 76 (250)
Q Consensus 1 ti~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-- 76 (250)
+|++||+.+++ ....+. .|...+..++|+|||+ .|+.++ ++.|.+||+.+++.......+. .......
T Consensus 130 ~i~~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~-~la~~~-~~~i~~~d~~~g~~~~~~~~~~-----~~~~~g~~~ 201 (741)
T 2ecf_A 130 ELYLYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGG-FVSFIR-GRNLWVIDLASGRQMQLTADGS-----TTIGNGIAE 201 (741)
T ss_dssp EEEEEESSSCSTTSCCBCC-CSSSCEEEEEECTTSS-EEEEEE-TTEEEEEETTTTEEEECCCCCC-----SSEEESCCC
T ss_pred cEEEEECCCCCcceEEEcc-cCCcccccccCCCCCC-EEEEEe-CCcEEEEecCCCCEEEeccCCc-----cceeccccc
Confidence 47899998883 445677 7888999999999999 788877 4699999998876544333110 0000000
Q ss_pred ------CCceeEEecCCCcccCCCCCEEEEEeCCC---------------------------------eEEEEeCCC-ce
Q 025649 77 ------PAFVHAIAIPDADMLDKTNKICVVAKGDG---------------------------------VVDVINIES-EL 116 (250)
Q Consensus 77 ------~~~v~~~~~~~~~~~~~~~~~l~~~~~d~---------------------------------~i~~~d~~~-~~ 116 (250)
...+.+++|+| +|++|++++.|+ .|.+||+.+ ++
T Consensus 202 ~v~~~~~~~~~~~~~Sp------Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 275 (741)
T 2ecf_A 202 FVADEEMDRHTGYWWAP------DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ 275 (741)
T ss_dssp HHHHHHSCCCCSEEECT------TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC
T ss_pred eeeeeccccccceEECC------CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc
Confidence 01247799999 999999987765 889999988 76
Q ss_pred eEeeccC-CCCCCccceeecccceeEEEeeee------ee--ccCeeeeeeccccCccc----cEEEEEeecCCCCCcEE
Q 025649 117 NISRSKS-TTKPLKGSQSTSKVNIRDAEMEIL------DQ--SGGKRLHLDYSVGGHTA----AASCVAFSMFGERGKYL 183 (250)
Q Consensus 117 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~h~~----~v~~~~~~p~~~~~~~l 183 (250)
....... .....+..++| |||+.++..... .. ++....+....+..+.. .+..++|+ |+|+++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s---pdg~~~ 351 (741)
T 2ecf_A 276 TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL---DDGSIL 351 (741)
T ss_dssp CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC---TTSCEE
T ss_pred eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC---CCCeEE
Confidence 5543322 23467889999 999998843221 11 11111122222222222 34578999 899999
Q ss_pred EEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE-EecCCCCCeEE-EeeCCc--eEEEEeC
Q 025649 184 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL-CTTPTESENLV-VCDTSK--VVKVYSI 249 (250)
Q Consensus 184 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~-s~~~d~--~i~vw~~ 249 (250)
++++.||.++||.+.... . ...+..|...+..+ .|+| +++.|+ +++.++ .++||++
T Consensus 352 ~~~~~~g~~~l~~~~~~~--------~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 352 WSSERTGFQHLYRIDSKG--------K-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp EEECTTSSCEEEEECSSS--------C-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEE
T ss_pred EEecCCCccEEEEEcCCC--------C-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEE
Confidence 999999988888776321 3 44556677778777 4887 777665 555555 8899975
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=4.2e-18 Score=129.42 Aligned_cols=218 Identities=10% Similarity=0.049 Sum_probs=135.3
Q ss_pred cEEEE--cccceeee-eeccCCCCCeeeEEEcCCCCeEEEEec--CCCeEEEEEccCCCC--ccceecCCCCCCCCCCcc
Q 025649 2 WQIID--IRQHCLYK-SLRAGHSSICSSVQFIPWKPWEVISGG--LDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQC 74 (250)
Q Consensus 2 i~iwd--~~~~~~~~-~l~~~h~~~v~~l~~~~~~~~~l~s~s--~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~ 74 (250)
|.+|+ .++++... ... .+...+..++|+|+|+ +++++. .++.|.+||+.+++. +..+..
T Consensus 18 i~v~~~d~~tg~~~~~~~~-~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~------------ 83 (347)
T 3hfq_A 18 IYQGTLDTTAKTLTNDGLL-AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA------------ 83 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE-EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE------------
T ss_pred EEEEEEcCCCCeEEEeeee-eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec------------
Confidence 44554 45666543 233 4667788999999998 666554 378999999976653 222211
Q ss_pred cCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCC-ce--eEeeccCC--------CCCCccceeecccceeEE
Q 025649 75 YNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES-EL--NISRSKST--------TKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 142 (250)
+...+..++|+| ++++|++++ .++.|.+||+.. +. ........ ....+.+++|+|+|+.++
T Consensus 84 -~~~~p~~~a~sp------dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v 156 (347)
T 3hfq_A 84 -PGTPPAYVAVDE------ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAV 156 (347)
T ss_dssp -ESCCCSEEEEET------TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEE
T ss_pred -CCCCCEEEEECC------CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEE
Confidence 235678899998 999888887 789999999963 22 22222211 112467799999999444
Q ss_pred E------eeeeeeccCeeeeeeccccCc-cccEEEEEeecCCCCCcEEEE-eeCCCeEEEEecCCCcceecccccceeee
Q 025649 143 E------MEILDQSGGKRLHLDYSVGGH-TAAASCVAFSMFGERGKYLIS-GGNDKLVKVWDCSRFQGVQTSINNDLLIK 214 (250)
Q Consensus 143 ~------~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 214 (250)
+ +..++............+..+ ...+..++|+ |+|+++++ +..++.|.+|++....... ..+..
T Consensus 157 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s---pdg~~l~v~~~~~~~v~v~~~~~~~g~~-----~~~~~ 228 (347)
T 3hfq_A 157 IDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS---PDGQYAFLAGELSSQIASLKYDTQTGAF-----TQLGI 228 (347)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC---TTSSEEEEEETTTTEEEEEEEETTTTEE-----EEEEE
T ss_pred EeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC---CCCCEEEEEeCCCCEEEEEEecCCCCce-----EEeee
Confidence 2 222333311111222222222 2357789999 89996655 5668899999987521110 11112
Q ss_pred eeccC------CceeEEEecCCCCCeE-EEeeCCceEEEEeC
Q 025649 215 NINLN------KKVNWLCTTPTESENL-VVCDTSKVVKVYSI 249 (250)
Q Consensus 215 ~~~~~------~~v~~~~~~~~~~~~l-~s~~~d~~i~vw~~ 249 (250)
..... ..+..++|+| ||++| ++...++.|.+|++
T Consensus 229 ~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v~~~ 269 (347)
T 3hfq_A 229 VKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAVFAV 269 (347)
T ss_dssp EESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEEEEE
T ss_pred eeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEEEEE
Confidence 22221 4588899998 88877 45667899999996
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=2.1e-18 Score=142.86 Aligned_cols=215 Identities=12% Similarity=-0.001 Sum_probs=144.3
Q ss_pred CcEEEEccc-----ceeeeeeccCCCCC--------------eeeEEEcCCCCeEEEEec--------------------
Q 025649 1 MWQIIDIRQ-----HCLYKSLRAGHSSI--------------CSSVQFIPWKPWEVISGG-------------------- 41 (250)
Q Consensus 1 ti~iwd~~~-----~~~~~~l~~~h~~~--------------v~~l~~~~~~~~~l~s~s-------------------- 41 (250)
+|++||+.+ ++...... .+... +.+++|+|||+ +|++++
T Consensus 142 ~i~v~~~~~~~~~~g~~~~~~~-~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~ 219 (706)
T 2z3z_A 142 NLYIARGGKLGEGMSRAIAVTI-DGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAE 219 (706)
T ss_dssp EEEEEECBCTTSCCCCCEESCS-CCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCE
T ss_pred eEEEEecCcccccCCCcEEecc-CCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCc
Confidence 378999998 87766555 44443 48999999999 788876
Q ss_pred -------------CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC---
Q 025649 42 -------------LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG--- 105 (250)
Q Consensus 42 -------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~--- 105 (250)
.+..|.+||+.+++........ .+...+.+++|+| +++.|++++.++
T Consensus 220 ~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~~sp------dg~~l~~~~~~~~~~ 282 (706)
T 2z3z_A 220 SKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE-----------PKEKFLTNLSWSP------DENILYVAEVNRAQN 282 (706)
T ss_dssp EEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS-----------CTTCEEEEEEECT------TSSEEEEEEECTTSC
T ss_pred eEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC-----------CCceeEeeEEEEC------CCCEEEEEEeCCCCC
Confidence 4578999999887654332210 1346789999999 999999987765
Q ss_pred --eEEEEeCCCc-eeEeeccCCCC---CCccceeecc--cceeEEEeeeeee----ccCe-eeeeeccccCccccEEE-E
Q 025649 106 --VVDVINIESE-LNISRSKSTTK---PLKGSQSTSK--VNIRDAEMEILDQ----SGGK-RLHLDYSVGGHTAAASC-V 171 (250)
Q Consensus 106 --~i~~~d~~~~-~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~----~~~~-~~~~~~~~~~h~~~v~~-~ 171 (250)
.|.+||+.++ ........... ..+..+.|+| +|+++++ +..+. +... ....+..+..|...+.. +
T Consensus 283 ~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~-~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~ 361 (706)
T 2z3z_A 283 ECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ-SRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFA 361 (706)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE-ECTTSSCEEEEEETTSCEEEECCCSSSCEEEEE
T ss_pred eeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEE-EccCCccEEEEEECCCCEEEecCCCCeEEEeee
Confidence 9999999998 33322221111 2346789999 9997763 22221 1111 12234456667777776 7
Q ss_pred EeecCCCCCcEEEEee-CCC----eEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC----c
Q 025649 172 AFSMFGERGKYLISGG-NDK----LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS----K 242 (250)
Q Consensus 172 ~~~p~~~~~~~l~s~~-~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~ 242 (250)
+|+ |+|+.|+.++ .++ .|..||+.++. . ....|...+..++|+| |+++++..+.+ +
T Consensus 362 ~~s---pdg~~l~~~~~~~~~~~~~l~~~d~~~~~---------~--~~l~~~~~~~~~~~sp-dg~~l~~~~~~~~~p~ 426 (706)
T 2z3z_A 362 GFD---PKGTRLYFESTEASPLERHFYCIDIKGGK---------T--KDLTPESGMHRTQLSP-DGSAIIDIFQSPTVPR 426 (706)
T ss_dssp EEC---TTSSEEEEEESSSCTTCBEEEEEETTCCC---------C--EESCCSSSEEEEEECT-TSSEEEEEEECSSCSC
T ss_pred EEc---CCCCEEEEEecCCCCceEEEEEEEcCCCC---------c--eeccCCCceEEEEECC-CCCEEEEEecCCCCCc
Confidence 999 8888776554 444 67777777652 1 1223667788999998 88887765433 5
Q ss_pred eEEEEeCC
Q 025649 243 VVKVYSIS 250 (250)
Q Consensus 243 ~i~vw~~~ 250 (250)
.|++||+.
T Consensus 427 ~i~l~d~~ 434 (706)
T 2z3z_A 427 KVTVTNIG 434 (706)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 69999863
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.83 E-value=2.9e-18 Score=130.41 Aligned_cols=197 Identities=10% Similarity=0.019 Sum_probs=141.4
Q ss_pred CCCCeeeEEEcCCCCeEEEEecC-------CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649 20 HSSICSSVQFIPWKPWEVISGGL-------DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD 92 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 92 (250)
....+..++|+|+++ .+++++. ++.|.+||..+++.+..+..+ ..+..++++|
T Consensus 39 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--------------~~~~~~~~s~----- 98 (353)
T 3vgz_A 39 VGKGAYEMAYSQQEN-ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--------------LKPFGATINN----- 98 (353)
T ss_dssp EESSEEEEEEETTTT-EEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--------------SCCCSEEEET-----
T ss_pred hccCccceEECCCCC-EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--------------CCcceEEECC-----
Confidence 345688999999998 5555543 678999999999888887744 3467889998
Q ss_pred CCCCEEE-EEeCCCeEEEEeCCCceeEeeccCCCCC--------CccceeecccceeEEEeee-----eeeccCeeeeee
Q 025649 93 KTNKICV-VAKGDGVVDVINIESELNISRSKSTTKP--------LKGSQSTSKVNIRDAEMEI-----LDQSGGKRLHLD 158 (250)
Q Consensus 93 ~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 158 (250)
++++++ +...++.|.+||+.+++....+...... ....+.++|+|+.++.... ....+....+.+
T Consensus 99 -dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 99 -TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp -TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred -CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence 888554 5556899999999998877665553222 2677999999988774331 111222333444
Q ss_pred ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee----ccCCceeEEEecCCCCCe
Q 025649 159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI----NLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~ 234 (250)
..+..+...+.+++|+ |+|+++++++.++.|.+||+.+++ ...... ++...+..++|+| +++.
T Consensus 178 ~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~i~~~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~s~-dg~~ 244 (353)
T 3vgz_A 178 TAIQNTGKMSTGLALD---SEGKRLYTTNADGELITIDTADNK---------ILSRKKLLDDGKEHFFINISLDT-ARQR 244 (353)
T ss_dssp EEECCCCTTCCCCEEE---TTTTEEEEECTTSEEEEEETTTTE---------EEEEEECCCSSSCCCEEEEEEET-TTTE
T ss_pred EEecCCCCccceEEEC---CCCCEEEEEcCCCeEEEEECCCCe---------EEEEEEcCCCCCCcccceEEECC-CCCE
Confidence 4555455567889999 899999999999999999999874 322222 2455678899998 7776
Q ss_pred EEEee-CCceEEEEeCC
Q 025649 235 LVVCD-TSKVVKVYSIS 250 (250)
Q Consensus 235 l~s~~-~d~~i~vw~~~ 250 (250)
+++++ .++.|.+||+.
T Consensus 245 l~~~~~~~~~v~~~d~~ 261 (353)
T 3vgz_A 245 AFITDSKAAEVLVVDTR 261 (353)
T ss_dssp EEEEESSSSEEEEEETT
T ss_pred EEEEeCCCCEEEEEECC
Confidence 66555 55999999963
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=1.5e-18 Score=140.71 Aligned_cols=205 Identities=7% Similarity=-0.097 Sum_probs=139.0
Q ss_pred CcEEEEcccceeeeeeccCCC-CCeeeEEEcCCCCeEEEEecC---CCeEEEEEccC--CCCccceecCCCCCCCCCCcc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHS-SICSSVQFIPWKPWEVISGGL---DSKLVMWDFSK--GRPNKIVNFGLPENNGNAGQC 74 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~-~~v~~l~~~~~~~~~l~s~s~---dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~ 74 (250)
+++||++.+++.. .+. .|. ..+..++|+|+ + ++++++. +...++|.+.. ......+..
T Consensus 45 ~~~lw~~~~g~~~-~lt-~~~~~~~~~~~~spd-~-~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~------------ 108 (582)
T 3o4h_A 45 SVNAYLYDGGETV-KLN-REPINSVLDPHYGVG-R-VILVRDVSKGAEQHALFKVNTSRPGEEQRLEA------------ 108 (582)
T ss_dssp EEEEEEEETTEEE-ECC-SSCCSEECEECTTCS-E-EEEEEECSTTSCCEEEEEEETTSTTCCEECTT------------
T ss_pred ceeEEEEcCCCcE-eee-cccccccccccCCCC-e-EEEEeccCCCCcceEEEEEeccCCCccccccC------------
Confidence 4689999776664 454 454 68999999999 5 7877765 55667766543 221122221
Q ss_pred cCCCceeEEecCCCcccCCCCC--EEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeee-----
Q 025649 75 YNPAFVHAIAIPDADMLDKTNK--ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL----- 147 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 147 (250)
.......+|+| +++ .++++.. +.+.+||+.+++......... .+++|+|||+.++.....
T Consensus 109 --~~~~~~~~~s~------dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~~~~----~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 109 --VKPMRILSGVD------TGEAVVFTGATE-DRVALYALDGGGLRELARLPG----FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp --SCSBEEEEEEE------CSSCEEEEEECS-SCEEEEEEETTEEEEEEEESS----CEEEEEEETTEEEEEEEEETTEE
T ss_pred --CCCceeeeeCC------CCCeEEEEecCC-CCceEEEccCCcEEEeecCCC----ceEEECCCCCEEEEEEEcCCCCe
Confidence 12234557776 554 4444444 455599999887654443321 789999999999843221
Q ss_pred eec--cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC--eEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649 148 DQS--GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 223 (250)
Q Consensus 148 ~~~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (250)
... +....+ ...+..|...+..++|+ |+|++|+++..++ .|++||+.++ +.. ....|...+.
T Consensus 176 ~i~~~d~~~g~-~~~l~~~~~~~~~~~~S---pDG~~l~~~~~~~~~~i~~~d~~~~---------~~~-~~~~~~~~~~ 241 (582)
T 3o4h_A 176 SLFTSNLSSGG-LRVFDSGEGSFSSASIS---PGMKVTAGLETAREARLVTVDPRDG---------SVE-DLELPSKDFS 241 (582)
T ss_dssp EEEEEETTTCC-CEEECCSSCEEEEEEEC---TTSCEEEEEECSSCEEEEEECTTTC---------CEE-ECCCSCSHHH
T ss_pred EEEEEcCCCCC-ceEeecCCCccccceEC---CCCCEEEEccCCCeeEEEEEcCCCC---------cEE-EccCCCcChh
Confidence 111 111111 23566788889999999 8999999888888 8999999987 333 5556766676
Q ss_pred EEE--------ecCCCCCeEEEeeCCceEEEEeC
Q 025649 224 WLC--------TTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 224 ~~~--------~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.++ |+| ||.++++++.|+.+++|++
T Consensus 242 ~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 242 SYRPTAITWLGYLP-DGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET
T ss_pred hhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE
Confidence 666 998 7888899999999999985
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=1.5e-16 Score=121.45 Aligned_cols=226 Identities=10% Similarity=0.074 Sum_probs=138.4
Q ss_pred cEEEEccc--cee--eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec--CCCCCCCCCCccc
Q 025649 2 WQIIDIRQ--HCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF--GLPENNGNAGQCY 75 (250)
Q Consensus 2 i~iwd~~~--~~~--~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~ 75 (250)
|.+|++.. ++. +..+. .+......+++ +++.++++...++.|.+|++.....+..+.. .... ........
T Consensus 77 v~~~~~~~~~g~~~~~~~~~-~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-~~~~~~~~ 152 (361)
T 3scy_A 77 VSAFAFDKEKGTLHLLNTQK-TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKG-SGPDKERQ 152 (361)
T ss_dssp EEEEEEETTTTEEEEEEEEE-CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCC-CCSCTTTC
T ss_pred EEEEEEeCCCCcEEEeeEec-cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccC-CCCCcccc
Confidence 67788764 443 33444 45566778888 7773445555789999999975443322210 0000 00000011
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCcee------E------eeccCCCCCCccceeecccceeEE
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELN------I------SRSKSTTKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~~~ 142 (250)
+...+++++|+| +++++++++ .++.|.+|++..... + .............++|+|+|++++
T Consensus 153 ~~~~~~~~~~sp------dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 153 TMPHLHCVRITP------DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp SSCCEEEEEECT------TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCCcceEEEECC------CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEE
Confidence 233568899999 998665554 589999998875331 1 122333345678899999999876
Q ss_pred Eee-------eeeeccCe--eeeeeccccCccccEEEEEeecCCCCCcEEEEeeC--CCeEEEEecC--CCcceeccccc
Q 025649 143 EME-------ILDQSGGK--RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN--DKLVKVWDCS--RFQGVQTSINN 209 (250)
Q Consensus 143 ~~~-------~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~--d~~i~iwd~~--~~~~~~~~~~~ 209 (250)
... .++..... ....+.....+......++|+ |+|++|+++.. ++.|.+|++. ++..
T Consensus 227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s---pdg~~l~v~~~~~~~~i~v~~~~~~~g~~------- 296 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS---PDGKYLYASNRLKADGVAIFKVDETNGTL------- 296 (361)
T ss_dssp EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC---TTSSEEEEEECSSSCEEEEEEECTTTCCE-------
T ss_pred EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC---CCCCEEEEECCCCCCEEEEEEEcCCCCcE-------
Confidence 432 23322211 111222334444567899999 89998876655 4899999996 3311
Q ss_pred ceeeeeeccCCceeEEEecCCCCCeEEEee-CCceEEEEeC
Q 025649 210 DLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI 249 (250)
Q Consensus 210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~ 249 (250)
..+..... ...+..++|+| +|++|++++ .++.|.+|++
T Consensus 297 ~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 297 TKVGYQLT-GIHPRNFIITP-NGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp EEEEEEEC-SSCCCEEEECT-TSCEEEEEETTTTEEEEEEE
T ss_pred EEeeEecC-CCCCceEEECC-CCCEEEEEECCCCCEEEEEE
Confidence 22223333 55688999998 888888776 6789999764
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=6.2e-19 Score=146.37 Aligned_cols=197 Identities=6% Similarity=-0.056 Sum_probs=134.2
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
..+.+++|+|+|+ ++++ +.||+|++||+.+++....+..+. .....+.+++|+| +|++|+++
T Consensus 17 ~~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~~~~~~----------~~~~~v~~~~~Sp------Dg~~l~~~ 78 (723)
T 1xfd_A 17 IHDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVLIEGKK----------IESLRAIRYEISP------DREYALFS 78 (723)
T ss_dssp CCCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEEECTTT----------TTTTTCSEEEECT------TSSEEEEE
T ss_pred ccccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEEecccc----------ccccccceEEECC------CCCEEEEE
Confidence 3477899999999 6766 789999999999998766664220 0011488999999 99999999
Q ss_pred eCC---------CeEEEEeCCCceeEeecc-CCCCCCccceeecccceeEEEeeeeeec--cCeeeeeeccccCccc---
Q 025649 102 KGD---------GVVDVINIESELNISRSK-STTKPLKGSQSTSKVNIRDAEMEILDQS--GGKRLHLDYSVGGHTA--- 166 (250)
Q Consensus 102 ~~d---------~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~--- 166 (250)
+.+ +.+.+||+.+++...... ......+..++|+|||+.++.....+.. +....+.......+..
T Consensus 79 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~ 158 (723)
T 1xfd_A 79 YNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVI 158 (723)
T ss_dssp ESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTE
T ss_pred ecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCce
Confidence 764 788899999887522211 1222347889999999999854321111 1111112222222222
Q ss_pred ---------------cEEEEEeecCCCCCcEEEEeeCCC----------------------------------eEEEEec
Q 025649 167 ---------------AASCVAFSMFGERGKYLISGGNDK----------------------------------LVKVWDC 197 (250)
Q Consensus 167 ---------------~v~~~~~~p~~~~~~~l~s~~~d~----------------------------------~i~iwd~ 197 (250)
.+.+++|+ |+|++|++++.|+ .|++||+
T Consensus 159 ~~g~~~~v~~ee~~~~~~~~~~S---pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~ 235 (723)
T 1xfd_A 159 YNGLSDWLYEEEILKTHIAHWWS---PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL 235 (723)
T ss_dssp EEEECCHHHHHTTSSSSEEEEEC---TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred ECcccceeEEEEeccCcceEEEC---CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence 23789999 8999999987553 7999999
Q ss_pred CCCcceecccccceeeeeec------cCCceeEEEecCCCCCeEEEee----CCceEEEEeC
Q 025649 198 SRFQGVQTSINNDLLIKNIN------LNKKVNWLCTTPTESENLVVCD----TSKVVKVYSI 249 (250)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~----~d~~i~vw~~ 249 (250)
.++... ..+.. +...+..++|+| ||+++++.+ .+..|++||+
T Consensus 236 ~~~~~~---------~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 236 NGPTHD---------LEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp SSSCCC---------EECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEET
T ss_pred CCCcee---------EEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeC
Confidence 887421 22222 356789999998 898886654 3467999986
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.81 E-value=4.6e-18 Score=146.37 Aligned_cols=220 Identities=5% Similarity=-0.003 Sum_probs=152.7
Q ss_pred CcEEEEccc-ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~-~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+++||.+.. +.....+. .|. .+...+|+|+|+ .|+.+ .++.|.+||+.. ..+..+..+ ..........+...
T Consensus 225 ~~~l~~~~~~g~~~~~l~-~~~-~~~~~~~SpDG~-~la~~-~~~~i~~~d~~~-~~l~~l~~~--~~~~~~~~~~~~~~ 297 (1045)
T 1k32_A 225 FGQIYSTDLDGKDLRKHT-SFT-DYYPRHLNTDGR-RILFS-KGGSIYIFNPDT-EKIEKIEIG--DLESPEDRIISIPS 297 (1045)
T ss_dssp SCEEEEEETTSCSCEECC-CCC-SSCEEEEEESSS-CEEEE-ETTEEEEECTTT-CCEEECCCC--CCCBCCSEEEECGG
T ss_pred ceEEEEEeCCCCcceEec-CCC-CcceeeEcCCCC-EEEEE-eCCEEEEecCCc-eEeeeeccC--cccccccccccccc
Confidence 357887653 44556666 555 467889999999 67776 489999999943 333333211 00001111123446
Q ss_pred eeEEecC-CCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee----eeeeccCee
Q 025649 80 VHAIAIP-DADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME----ILDQSGGKR 154 (250)
Q Consensus 80 v~~~~~~-~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 154 (250)
+.+++|+ | ++++|++++ ++.|.+|++..+.... ........+..++|+ +|+.++... .++......
T Consensus 298 v~~~~~S~p------dG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~ 368 (1045)
T 1k32_A 298 KFAEDFSPL------DGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT 368 (1045)
T ss_dssp GGEEEEEEC------GGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT
T ss_pred cceeeecCC------CCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC
Confidence 8899999 9 999998887 7899999998876543 222222278889999 999888532 221222111
Q ss_pred eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649 155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 234 (250)
Q Consensus 155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 234 (250)
.+ ...+.+|...+..++|+ |+|++|++++.++.|++||+.++ +......+|...+..++|+| ||++
T Consensus 369 ~~-~~~l~~~~~~~~~~~~S---pDG~~la~~~~~~~v~~~d~~tg---------~~~~~~~~~~~~v~~~~~Sp-DG~~ 434 (1045)
T 1k32_A 369 GK-AEKFEENLGNVFAMGVD---RNGKFAVVANDRFEIMTVDLETG---------KPTVIERSREAMITDFTISD-NSRF 434 (1045)
T ss_dssp CC-EEECCCCCCSEEEEEEC---TTSSEEEEEETTSEEEEEETTTC---------CEEEEEECSSSCCCCEEECT-TSCE
T ss_pred CC-ceEecCCccceeeeEEC---CCCCEEEEECCCCeEEEEECCCC---------ceEEeccCCCCCccceEECC-CCCe
Confidence 11 12334777889999999 89999999999999999999987 44444557888899999998 8998
Q ss_pred EEEeeCC----------ceEEEEeCC
Q 025649 235 LVVCDTS----------KVVKVYSIS 250 (250)
Q Consensus 235 l~s~~~d----------~~i~vw~~~ 250 (250)
|++++.+ +.|++||+.
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred EEEEecCccccccCCCCCeEEEEECC
Confidence 8887654 489999973
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=6.9e-18 Score=129.20 Aligned_cols=225 Identities=9% Similarity=-0.031 Sum_probs=141.7
Q ss_pred CcEEEEcc-cceeeeeeccCCCCCeeeEEEcCCCCe-EEEEec-------------CCCeEEEEEcc-CCCCccceecCC
Q 025649 1 MWQIIDIR-QHCLYKSLRAGHSSICSSVQFIPWKPW-EVISGG-------------LDSKLVMWDFS-KGRPNKIVNFGL 64 (250)
Q Consensus 1 ti~iwd~~-~~~~~~~l~~~h~~~v~~l~~~~~~~~-~l~s~s-------------~dg~v~iwd~~-~~~~~~~~~~~~ 64 (250)
+|.+||+. ++++.........+.+.+++|+|+|+. ++++++ .+|++.+|++. +++....+..-.
T Consensus 61 ~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~ 140 (365)
T 1jof_A 61 KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE 140 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE
T ss_pred eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE
Confidence 47899997 777654433011134667999999983 244554 68999999997 455443332100
Q ss_pred CCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCC-CceeEe--eccCC-CCCCccceeecccce
Q 025649 65 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIE-SELNIS--RSKST-TKPLKGSQSTSKVNI 139 (250)
Q Consensus 65 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~-~~~~~~--~~~~~-~~~~~~~~~~~~~~~ 139 (250)
..+...+++++|+| ++++++++. .++.|++||+. +++... ..... ....+..++|+|+|+
T Consensus 141 ---------~~~~~~~~~~~~sp------dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~ 205 (365)
T 1jof_A 141 ---------YQENTGIHGMVFDP------TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN 205 (365)
T ss_dssp ---------CCTTCCEEEEEECT------TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSS
T ss_pred ---------eCCCCcceEEEECC------CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCC
Confidence 00235689999999 999888765 46899999998 665432 22222 245688899999999
Q ss_pred eEEEee-------eeeec--cCee---eeeecccc----Cccc------cEEEEE-eecCCCCCcEEEEeeCC-C-----
Q 025649 140 RDAEME-------ILDQS--GGKR---LHLDYSVG----GHTA------AASCVA-FSMFGERGKYLISGGND-K----- 190 (250)
Q Consensus 140 ~~~~~~-------~~~~~--~~~~---~~~~~~~~----~h~~------~v~~~~-~~p~~~~~~~l~s~~~d-~----- 190 (250)
+++... .++.. .... .+.+..+. +|.. .+..++ |+ |+|++|++++.+ +
T Consensus 206 ~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s---pdG~~l~v~~~~~~~~~~~ 282 (365)
T 1jof_A 206 YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT---FSGKYMFASSRANKFELQG 282 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC---TTSSEEEEEEEESSTTSCC
T ss_pred EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC---CCCCEEEEECCCCCCCCCC
Confidence 887432 12111 1111 11122232 2332 588999 99 899988776543 2
Q ss_pred eEEEEecC-CCcceecccccceeeeeeccCCceeEEEecCC--CCCeEEEeeC-CceEEEEeC
Q 025649 191 LVKVWDCS-RFQGVQTSINNDLLIKNINLNKKVNWLCTTPT--ESENLVVCDT-SKVVKVYSI 249 (250)
Q Consensus 191 ~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~-d~~i~vw~~ 249 (250)
.|.+|++. ++... ........+...+..++++|. ||++|++++. ++.|++|++
T Consensus 283 ~i~v~~~~~~g~~~------~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 283 YIAGFKLRDCGSIE------KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEEEEEECTTSCEE------EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred eEEEEEECCCCCEE------EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 89999996 44210 110012234556778889975 6888988876 489999986
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.79 E-value=5e-18 Score=146.14 Aligned_cols=207 Identities=9% Similarity=-0.080 Sum_probs=150.3
Q ss_pred cEEEEcccceeeeeeccC-----------CCCCeeeEEEc-CCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCC
Q 025649 2 WQIIDIRQHCLYKSLRAG-----------HSSICSSVQFI-PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNG 69 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~-----------h~~~v~~l~~~-~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 69 (250)
|.+||+.+.++ ..+. + |...+.+++|+ |+|+ .|++++ ++.|.+|++.+++... +. .
T Consensus 267 i~~~d~~~~~l-~~l~-~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~~~~~~-~~-~------ 334 (1045)
T 1k32_A 267 IYIFNPDTEKI-EKIE-IGDLESPEDRIISIPSKFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTYVLK-VP-E------ 334 (1045)
T ss_dssp EEEECTTTCCE-EECC-CCCCCBCCSEEEECGGGGEEEEEECGGG-CEEEEE-TTEEEEECTTSSBEEE-CS-C------
T ss_pred EEEecCCceEe-eeec-cCcccccccccccccccceeeecCCCCC-EEEEEE-cCEEEEEcCCCCceEE-cc-C------
Confidence 67888854443 3555 4 44579999999 9998 677777 7899999998765433 22 1
Q ss_pred CCCcccCCC-ceeEEecCCCcccCCCCCEEEEEeCCCeEE-EEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-
Q 025649 70 NAGQCYNPA-FVHAIAIPDADMLDKTNKICVVAKGDGVVD-VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI- 146 (250)
Q Consensus 70 ~~~~~~~~~-~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 146 (250)
+.. .+..++|+ +++.|+.++.++.+. +||+.+++..... .+...+..++|+|||+.++....
T Consensus 335 ------~~~~~~~~~~~s-------dg~~l~~~s~~~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~SpDG~~la~~~~~ 399 (1045)
T 1k32_A 335 ------PLRIRYVRRGGD-------TKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNGKFAVVANDR 399 (1045)
T ss_dssp ------CSCEEEEEECSS-------SEEEEEEEETTEEEEEEEETTTCCEEECC--CCCCSEEEEEECTTSSEEEEEETT
T ss_pred ------CCcceEEeeeEc-------CCCeEEEEECCCceEEEEECCCCCceEec--CCccceeeeEECCCCCEEEEECCC
Confidence 334 67777776 678888888888898 9999877654333 34467889999999999984221
Q ss_pred --eeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC----------eEEEEecCCCcceecccccceeee
Q 025649 147 --LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK----------LVKVWDCSRFQGVQTSINNDLLIK 214 (250)
Q Consensus 147 --~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~----------~i~iwd~~~~~~~~~~~~~~~~~~ 214 (250)
.-.++....+....+.+|...+.+++|+ |+|++|++++.++ .|++||+.++ + ...
T Consensus 400 ~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S---pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---------~-~~~ 466 (1045)
T 1k32_A 400 FEIMTVDLETGKPTVIERSREAMITDFTIS---DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---------K-IFA 466 (1045)
T ss_dssp SEEEEEETTTCCEEEEEECSSSCCCCEEEC---TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---------E-EEE
T ss_pred CeEEEEECCCCceEEeccCCCCCccceEEC---CCCCeEEEEecCccccccCCCCCeEEEEECCCC---------c-EEE
Confidence 1111222223333445788888999999 8999999887654 9999999986 3 345
Q ss_pred eeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 215 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 215 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+..|...+..++|+| ||++|++++.++...+|+.
T Consensus 467 l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 467 ATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp CSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECS
T ss_pred eeCCCcccCCceEcC-CCCEEEEEecccCCcCcch
Confidence 667788888999998 8999999888877777763
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=5.9e-16 Score=118.24 Aligned_cols=216 Identities=11% Similarity=0.015 Sum_probs=131.7
Q ss_pred cEEEEc--ccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC----CeEEEEEccC--CCCc--cceecCCCCCCCCC
Q 025649 2 WQIIDI--RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD----SKLVMWDFSK--GRPN--KIVNFGLPENNGNA 71 (250)
Q Consensus 2 i~iwd~--~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d----g~v~iwd~~~--~~~~--~~~~~~~~~~~~~~ 71 (250)
|.+|++ ++++...... .+...+..++|+|+++ +|++++.+ +.|.+|++.. ++.. .....
T Consensus 29 i~~~~~d~~~g~~~~~~~-~~~~~p~~l~~spdg~-~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~--------- 97 (361)
T 3scy_A 29 IYTFRFNEETGESLPLSD-AEVANPSYLIPSADGK-FVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT--------- 97 (361)
T ss_dssp EEEEEEETTTCCEEEEEE-EECSCCCSEEECTTSS-EEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC---------
T ss_pred EEEEEEeCCCCCEEEeec-ccCCCCceEEECCCCC-EEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc---------
Confidence 566655 5666554444 3667788999999999 78877775 8999999875 3321 12211
Q ss_pred CcccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCceeEeec----cCC---------CCCCccceeeccc
Q 025649 72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRS----KST---------TKPLKGSQSTSKV 137 (250)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~----~~~---------~~~~~~~~~~~~~ 137 (250)
+......+++ ++++|++++ .++.|.+|++.....+... ... ....+.+++|+|+
T Consensus 98 ----~~~~p~~~~~--------dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd 165 (361)
T 3scy_A 98 ----MGADPCYLTT--------NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD 165 (361)
T ss_dssp ----SSSCEEEEEE--------CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred ----CCCCcEEEEE--------CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC
Confidence 1233445555 355555554 6899999999753322111 000 1123467999999
Q ss_pred ceeEEEee-------eeeeccCee------ee-----eeccccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecC
Q 025649 138 NIRDAEME-------ILDQSGGKR------LH-----LDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCS 198 (250)
Q Consensus 138 ~~~~~~~~-------~~~~~~~~~------~~-----~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~ 198 (250)
|++++... .++...... .. ..... .+...+..++|+ |+|+++++++ .++.|.+||+.
T Consensus 166 g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~s---pdg~~l~v~~~~~~~v~v~~~~ 241 (361)
T 3scy_A 166 GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV-APGSGPRHLIFN---SDGKFAYLINEIGGTVIAFRYA 241 (361)
T ss_dssp SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-CTTCCEEEEEEC---TTSSEEEEEETTTCEEEEEEEE
T ss_pred CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec-CCCCCCeEEEEc---CCCCEEEEEcCCCCeEEEEEec
Confidence 99776432 222221111 11 11122 234557899999 8999887776 68999999998
Q ss_pred CCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC--CceEEEEeC
Q 025649 199 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT--SKVVKVYSI 249 (250)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~vw~~ 249 (250)
++..... ..+.....+...+..++|+| ||++|++++. ++.|.+|++
T Consensus 242 ~g~~~~~----~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 242 DGMLDEI----QTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp TTEEEEE----EEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEE
T ss_pred CCceEEe----EEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEE
Confidence 6532110 11112223344578899998 8998877665 489999986
No 158
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.77 E-value=2e-15 Score=111.55 Aligned_cols=207 Identities=9% Similarity=0.051 Sum_probs=140.0
Q ss_pred cEEEEcccceeeeeecc-----CCCCCeeeEEE-cCCCCeEEEEecC-CCeEEEEEccCCCCccceecCCCCCCCCCCcc
Q 025649 2 WQIIDIRQHCLYKSLRA-----GHSSICSSVQF-IPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQC 74 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~-----~h~~~v~~l~~-~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 74 (250)
|++||.. ++.+..+.. +|...+..+++ .+++. ++++... ++.|.+|| .+++.+..+...
T Consensus 53 i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~~~~i~~~d-~~g~~~~~~~~~----------- 118 (286)
T 1q7f_A 53 IQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTHQIQIYN-QYGQFVRKFGAT----------- 118 (286)
T ss_dssp EEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGCEEEEEC-TTSCEEEEECTT-----------
T ss_pred EEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCCCCEEEEEC-CCCcEEEEecCc-----------
Confidence 6788876 565555531 34467889999 46776 6666543 88999999 566666555422
Q ss_pred cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC-CCCCCccceeecccceeEEEe------eee
Q 025649 75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDAEM------EIL 147 (250)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~ 147 (250)
....+.++++.| +++++++...++.|.+||... +....+.. .....+..++++++|+.+++. ..+
T Consensus 119 -~~~~~~~i~~~~------~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 190 (286)
T 1q7f_A 119 -ILQHPRGVTVDN------KGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVF 190 (286)
T ss_dssp -TCSCEEEEEECT------TSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEE
T ss_pred -cCCCceEEEEeC------CCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEE
Confidence 234678999998 888888888889999999754 43333322 223457889999999877642 112
Q ss_pred eeccCeeeeeecccc--CccccEEEEEeecCCCCCcEEEEeeCCC-eEEEEecCCCcceecccccceeeeeeccC--Cce
Q 025649 148 DQSGGKRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGNDK-LVKVWDCSRFQGVQTSINNDLLIKNINLN--KKV 222 (250)
Q Consensus 148 ~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~v 222 (250)
+. ..+.+..+. ++...+..++++ ++|+++++...++ .|.+||... +.+..+..+. ..+
T Consensus 191 ~~----~g~~~~~~~~~g~~~~p~~i~~d---~~G~l~v~~~~~~~~i~~~~~~g----------~~~~~~~~~~~~~~~ 253 (286)
T 1q7f_A 191 NY----EGQYLRQIGGEGITNYPIGVGIN---SNGEILIADNHNNFNLTIFTQDG----------QLISALESKVKHAQC 253 (286)
T ss_dssp ET----TCCEEEEESCTTTSCSEEEEEEC---TTCCEEEEECSSSCEEEEECTTS----------CEEEEEEESSCCSCE
T ss_pred cC----CCCEEEEEccCCccCCCcEEEEC---CCCCEEEEeCCCCEEEEEECCCC----------CEEEEEcccCCCCcc
Confidence 21 112222332 333578899999 8999988888776 999999654 3333333333 347
Q ss_pred eEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 223 NWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 223 ~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
..+++.| +|+++++ +.|+.|++|++
T Consensus 254 ~~i~~~~-~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 254 FDVALMD-DGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEEEEET-TTEEEEE-ETTTEEEEEEC
T ss_pred eeEEECC-CCcEEEE-CCCCeEEEEEc
Confidence 7899997 8876666 67999999986
No 159
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=1.1e-16 Score=122.19 Aligned_cols=217 Identities=10% Similarity=0.007 Sum_probs=138.8
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec----------CCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG----------LDSKLVMWDFSKGRPNKIVNFGLPENNGN 70 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 70 (250)
+|.+||..+++.+..+. .+..+ .++|+|+++ +++++. .+++|.+||+.+++.+..+......
T Consensus 32 ~v~v~D~~t~~~~~~i~-~g~~p--~i~~spdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~---- 103 (361)
T 2oiz_A 32 RVHVYDYTNGKFLGMVP-TAFNG--HVQVSNDGK-KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR---- 103 (361)
T ss_dssp EEEEEETTTCCEEEEEE-CCEEE--EEEECTTSS-EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB----
T ss_pred eEEEEECCCCeEEEEec-CCCCC--ceEECCCCC-EEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc----
Confidence 36899999999999998 66666 899999999 666654 3678999999988888777643100
Q ss_pred CCcccCCCceeEEecCCCcccCCCCCEEEEEeC--CCeEEEEeCCCceeEee-ccCCCC--------CCccceeecccce
Q 025649 71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG--DGVVDVINIESELNISR-SKSTTK--------PLKGSQSTSKVNI 139 (250)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~ 139 (250)
..+......++++| ++++|+++.. ++.|.+||+.+++.... +..... ....-++++++|+
T Consensus 104 ---~~~g~~p~~i~~sp------dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~ 174 (361)
T 2oiz_A 104 ---VQGLNYDGLFRQTT------DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGG 174 (361)
T ss_dssp ---CCBCCCGGGEEECT------TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSS
T ss_pred ---cccCCCcceEEECC------CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCc
Confidence 00113456789998 9999998864 68999999999887766 433211 0112244455554
Q ss_pred eEEEeeeeeeccC---------------------eee-e--------eecccc--Cc-----------------c----c
Q 025649 140 RDAEMEILDQSGG---------------------KRL-H--------LDYSVG--GH-----------------T----A 166 (250)
Q Consensus 140 ~~~~~~~~~~~~~---------------------~~~-~--------~~~~~~--~h-----------------~----~ 166 (250)
.+......+.... ... . .+..+. .. . .
T Consensus 175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 254 (361)
T 2oiz_A 175 LLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG 254 (361)
T ss_dssp EEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred EEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccC
Confidence 4431100000000 000 0 000000 00 0 0
Q ss_pred cEEEEEeecCCCCCcEEEEeeC-----------CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 167 AASCVAFSMFGERGKYLISGGN-----------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 167 ~v~~~~~~p~~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
....++|+ |+++.++.+.. .+.|.+||+.++ +.+..+..+. +..++++| ||++|
T Consensus 255 g~~~~a~~---~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------~~v~~i~~~~--p~~ia~sp-dg~~l 319 (361)
T 2oiz_A 255 GYNLVGLH---RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------QRVARIPGRD--ALSMTIDQ-QRNLM 319 (361)
T ss_dssp CSSCEEEE---TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------EEEEEEECTT--CCEEEEET-TTTEE
T ss_pred CeeEEEEe---cCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------cEEEEEecCC--eeEEEECC-CCCEE
Confidence 00126778 78776665532 348999999997 5555665555 99999998 88899
Q ss_pred EEeeCCceEEEEeCC
Q 025649 236 VVCDTSKVVKVYSIS 250 (250)
Q Consensus 236 ~s~~~d~~i~vw~~~ 250 (250)
++++. +.|.+||..
T Consensus 320 ~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 320 LTLDG-GNVNVYDIS 333 (361)
T ss_dssp EEECS-SCEEEEECS
T ss_pred EEeCC-CeEEEEECC
Confidence 88886 999999963
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=2.4e-16 Score=120.69 Aligned_cols=221 Identities=9% Similarity=-0.012 Sum_probs=135.1
Q ss_pred cEEEE--cccceeee--eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc-CCCCccceecCCCCCCCCCCcccC
Q 025649 2 WQIID--IRQHCLYK--SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 2 i~iwd--~~~~~~~~--~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
|.+|+ .+++++.. ....+....+..++|+|+++ +|++++.+ .|.+|++. +++........ .
T Consensus 16 i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~-~l~~~~~~-~v~~~~~~~~g~~~~~~~~~------------~ 81 (365)
T 1jof_A 16 IFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERK-NIYGAAMK-KWSSFAVKSPTEIVHEASHP------------I 81 (365)
T ss_dssp EEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSS-EEEEEEBT-EEEEEEEEETTEEEEEEEEE------------C
T ss_pred EEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCC-EEEEEccc-eEEEEEECCCCCEEEeeEee------------c
Confidence 44544 45665432 22102345788999999999 78888877 99999997 67654332211 0
Q ss_pred CCceeEEecCCCcccCCCCCE--EEEEe-------------CCCeEEEEeCCC-ceeEeecc---CCCCCCccceeeccc
Q 025649 77 PAFVHAIAIPDADMLDKTNKI--CVVAK-------------GDGVVDVINIES-ELNISRSK---STTKPLKGSQSTSKV 137 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~--l~~~~-------------~d~~i~~~d~~~-~~~~~~~~---~~~~~~~~~~~~~~~ 137 (250)
......++++| ++++ ++++. .++.+.+|++.. ++...... ......+..++|+|+
T Consensus 82 ~g~~~~~~~sp------dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd 155 (365)
T 1jof_A 82 GGHPRANDADT------NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT 155 (365)
T ss_dssp CSSGGGGCTTS------CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT
T ss_pred CCCCccEEECC------CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC
Confidence 11244578888 8984 45553 689999999974 54433222 123467889999999
Q ss_pred ceeEEEee-------eeeeccCeeeeeecccc--CccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecC--CCcceec
Q 025649 138 NIRDAEME-------ILDQSGGKRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCS--RFQGVQT 205 (250)
Q Consensus 138 ~~~~~~~~-------~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~--~~~~~~~ 205 (250)
|++++... .++.........+..+. .|...+..++|+ |+|+++++++. ++.|.+|++. ++.....
T Consensus 156 G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s---pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 232 (365)
T 1jof_A 156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH---PTGNYLYALMEAGNRICEYVIDPATHMPVYT 232 (365)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC---CCCCEEEEEECCCCeEEEEEEeCCCCcEEEc
Confidence 99877422 22222111112222232 245668999999 89998887765 7899999876 3321100
Q ss_pred ccccceeeee----eccCC------ceeEEE-ecCCCCCeEEEeeCCc------eEEEEeC
Q 025649 206 SINNDLLIKN----INLNK------KVNWLC-TTPTESENLVVCDTSK------VVKVYSI 249 (250)
Q Consensus 206 ~~~~~~~~~~----~~~~~------~v~~~~-~~~~~~~~l~s~~~d~------~i~vw~~ 249 (250)
. ..+... .+|.. .+..++ |+| ||++|++++.+. .|.+|++
T Consensus 233 ~---~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 233 H---HSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp E---EEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred c---ceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEE
Confidence 0 001111 12222 578899 887 898887765432 8999986
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=1e-16 Score=133.44 Aligned_cols=216 Identities=6% Similarity=-0.069 Sum_probs=140.4
Q ss_pred CcEEEEcccceeeeeeccCCCCC-----eeeEEEcCCCCeEEEEecCC---------CeEEEEEccCCCCccceecCCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSI-----CSSVQFIPWKPWEVISGGLD---------SKLVMWDFSKGRPNKIVNFGLPE 66 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~-----v~~l~~~~~~~~~l~s~s~d---------g~v~iwd~~~~~~~~~~~~~~~~ 66 (250)
+|++||+.+++....+. +|... ...++|||||+ +|+.++.+ +.+.+||+.+++......
T Consensus 37 ~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~----- 109 (740)
T 4a5s_A 37 NILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER----- 109 (740)
T ss_dssp EEEEEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-----
T ss_pred cEEEEECCCCceEEEEe-chhhhhhcccccceEECCCCC-EEEEEECCeeeEEEccceEEEEEECCCCcEEEccc-----
Confidence 48999999999887777 77643 23478999999 78888776 566799999887543222
Q ss_pred CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC-----------------CCc
Q 025649 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK-----------------PLK 129 (250)
Q Consensus 67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----------------~~~ 129 (250)
++..+...+||| ||+.|+.+ .++.|++||+.++........... ...
T Consensus 110 ---------~~~~~~~~~~SP------dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 110 ---------IPNNTQWVTWSP------VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp ---------CCTTEEEEEECS------STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred ---------CCCcceeeEECC------CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 356789999999 99999888 468999999988765433221111 122
Q ss_pred cceeecccceeEEEeeeeeec----------------------------------------cCee---ee--eecccc--
Q 025649 130 GSQSTSKVNIRDAEMEILDQS----------------------------------------GGKR---LH--LDYSVG-- 162 (250)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~---~~--~~~~~~-- 162 (250)
..+.|||||+.|+.... +.. +... .+ ....+.
T Consensus 174 ~~~~wSpDg~~la~~~~-d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQF-NDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp BCEEECTTSSEEEEEEE-ECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred cceEECCCCCEEEEEEE-cccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 35889999999984321 111 0000 00 011111
Q ss_pred ----CccccEEEEEeecCCCCCcEEEEee----CCCeEEEEecCCCc----ceecccccceeeeeeccCCcee-----EE
Q 025649 163 ----GHTAAASCVAFSMFGERGKYLISGG----NDKLVKVWDCSRFQ----GVQTSINNDLLIKNINLNKKVN-----WL 225 (250)
Q Consensus 163 ----~h~~~v~~~~~~p~~~~~~~l~s~~----~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~v~-----~~ 225 (250)
+|...+..++|+ |+|+.++... .+..|++||+.+++ +... .. .....|...+. ..
T Consensus 253 ~~~~~~~~~~~~~~ws---pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~----~~-l~~~~~~~~v~~~~~~~p 324 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWA---TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA----RQ-HIEMSTTGWVGRFRPSEP 324 (740)
T ss_dssp HHHHTSCEEEEEEEEE---ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG----GC-EEEECSSSCSSSSSCCCC
T ss_pred ccCCCCCeEEEEEEEe---CCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE----EE-eeeccCCceEccCcCCCc
Confidence 366778999999 8998666543 23479999999875 2110 00 11134554443 67
Q ss_pred EecCCCCCeEE-Eee-CCc--eEEEEeC
Q 025649 226 CTTPTESENLV-VCD-TSK--VVKVYSI 249 (250)
Q Consensus 226 ~~~~~~~~~l~-s~~-~d~--~i~vw~~ 249 (250)
+|+| ||+.|+ ..+ .+| .|++||+
T Consensus 325 ~fsp-DG~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 325 HFTL-DGNSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp EECT-TSSEEEEEEECTTSCEEEEEEET
T ss_pred eEcC-CCCEEEEEEEcCCCceEEEEEEC
Confidence 8987 888766 554 444 5777764
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.76 E-value=3.7e-17 Score=132.62 Aligned_cols=186 Identities=10% Similarity=-0.023 Sum_probs=127.0
Q ss_pred CCCeeeEEEcCCCCeEEEEecC-CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 99 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 99 (250)
..+|.+++|+|||+ .|++++. ||+++||++.+++...... + +...+..++|+| + ++++
T Consensus 21 ~~~~~~~~~~~DG~-~la~~s~~~g~~~lw~~~~g~~~~lt~-~------------~~~~~~~~~~sp------d-~~l~ 79 (582)
T 3o4h_A 21 AVEKYSLQGVVDGD-KLLVVGFSEGSVNAYLYDGGETVKLNR-E------------PINSVLDPHYGV------G-RVIL 79 (582)
T ss_dssp HSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTEEEECCS-S------------CCSEECEECTTC------S-EEEE
T ss_pred ccchheeecCCCCC-eEEEEEccCCceeEEEEcCCCcEeeec-c------------cccccccccCCC------C-eEEE
Confidence 56899999999999 7888776 9999999996655433322 2 225789999998 7 7777
Q ss_pred EEeC---CCeEEEEeCCC---ceeEeeccCCCCCCccceeecccceeEEEe-e------eeeeccCeeeeeeccccCccc
Q 025649 100 VAKG---DGVVDVINIES---ELNISRSKSTTKPLKGSQSTSKVNIRDAEM-E------ILDQSGGKRLHLDYSVGGHTA 166 (250)
Q Consensus 100 ~~~~---d~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~h~~ 166 (250)
+++. +...++|.+.. +... ..... ......+|+|+|+.++.+ + .++....+ .. .+..+..
T Consensus 80 ~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~---~~-~l~~~~~ 152 (582)
T 3o4h_A 80 VRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG---LR-ELARLPG 152 (582)
T ss_dssp EEECSTTSCCEEEEEEETTSTTCCE-ECTTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE---EE-EEEEESS
T ss_pred EeccCCCCcceEEEEEeccCCCccc-cccCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc---EE-EeecCCC
Confidence 7764 45556654432 2222 22222 234466888888654321 1 22222221 11 1222222
Q ss_pred cEEEEEeecCCCCCcEEEEeeCC----CeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCc
Q 025649 167 AASCVAFSMFGERGKYLISGGND----KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK 242 (250)
Q Consensus 167 ~v~~~~~~p~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 242 (250)
.+++|+ |+|++|++++.| +.|++||+.++ +. ..+..|...+..++|+| ||+.|++++.++
T Consensus 153 --~~~~~s---pDG~~la~~~~~~~~~~~i~~~d~~~g---------~~-~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~ 216 (582)
T 3o4h_A 153 --FGFVSD---IRGDLIAGLGFFGGGRVSLFTSNLSSG---------GL-RVFDSGEGSFSSASISP-GMKVTAGLETAR 216 (582)
T ss_dssp --CEEEEE---EETTEEEEEEEEETTEEEEEEEETTTC---------CC-EEECCSSCEEEEEEECT-TSCEEEEEECSS
T ss_pred --ceEEEC---CCCCEEEEEEEcCCCCeEEEEEcCCCC---------Cc-eEeecCCCccccceECC-CCCEEEEccCCC
Confidence 788999 899999988877 78999999986 32 35567888899999998 999999888888
Q ss_pred --eEEEEeCC
Q 025649 243 --VVKVYSIS 250 (250)
Q Consensus 243 --~i~vw~~~ 250 (250)
.|++||+.
T Consensus 217 ~~~i~~~d~~ 226 (582)
T 3o4h_A 217 EARLVTVDPR 226 (582)
T ss_dssp CEEEEEECTT
T ss_pred eeEEEEEcCC
Confidence 89999863
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.75 E-value=2.7e-16 Score=119.27 Aligned_cols=152 Identities=9% Similarity=-0.050 Sum_probs=104.9
Q ss_pred eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE-EEeCC
Q 025649 26 SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGD 104 (250)
Q Consensus 26 ~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~-~~~~d 104 (250)
.+++++++. ++++++.+++|.+||+.+++.+..+..+ ....+..++++| ++++++ +...+
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~------------~~~~~~~~~~s~------dg~~~~v~~~~~ 64 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMP------------DKFGPGTAMMAP------DNRTAYVLNNHY 64 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEECS------------SCCSSCEEEECT------TSSEEEEEETTT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEecC------------CCCCCceeEECC------CCCEEEEEeCCC
Confidence 456778777 8999999999999999999888777644 111467899998 888654 55678
Q ss_pred CeEEEEeCCCceeEeeccCCC-----CCCccceeecccceeEEEeeee---------------eeccCee---eeeeccc
Q 025649 105 GVVDVINIESELNISRSKSTT-----KPLKGSQSTSKVNIRDAEMEIL---------------DQSGGKR---LHLDYSV 161 (250)
Q Consensus 105 ~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~---~~~~~~~ 161 (250)
+.|.+||+.+++......... ...+..++|+|+|++++..... ...+... .+.+..+
T Consensus 65 ~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 144 (349)
T 1jmx_B 65 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF 144 (349)
T ss_dssp TEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE
T ss_pred CcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec
Confidence 999999999988776555432 2347889999999988843311 0111111 1112222
Q ss_pred cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649 162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV 203 (250)
Q Consensus 162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 203 (250)
. +...+.+++|+ |+|+ ++.++. .|++||+.+++..
T Consensus 145 ~-~~~~~~~~~~s---~dg~-l~~~~~--~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 145 P-MPRQVYLMRAA---DDGS-LYVAGP--DIYKMDVKTGKYT 179 (349)
T ss_dssp E-CCSSCCCEEEC---TTSC-EEEESS--SEEEECTTTCCEE
T ss_pred c-CCCcccceeEC---CCCc-EEEccC--cEEEEeCCCCcee
Confidence 2 23357889999 8998 555543 4999999887544
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=1.6e-15 Score=114.42 Aligned_cols=221 Identities=7% Similarity=-0.027 Sum_probs=145.8
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC-CccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+|.+||..+++.+..+..++-.....++++|+|. ++++...++.|++||..... .+..+... .... ....+...
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~--~~~g--~~~~~~~~ 144 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRS--MQPG--SDQNHFCQ 144 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBT--TBCC--CSTTCCSS
T ss_pred cEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEeccc--CCCC--CCccccCC
Confidence 3789999889887766534556789999999999 89999999999999985432 34443211 0000 00012345
Q ss_pred eeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCceeEeeccCC---------CCCCccceeeccc-ceeEEE-----
Q 025649 80 VHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKST---------TKPLKGSQSTSKV-NIRDAE----- 143 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~----- 143 (250)
...++++| .+++++++.+ .++.|++||. .+.....+... .-.....++++|+ +.++++
T Consensus 145 P~~ia~~~-----~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~ 218 (329)
T 3fvz_A 145 PTDVAVEP-----STGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG 218 (329)
T ss_dssp EEEEEECT-----TTCCEEEEECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT
T ss_pred CcEEEEeC-----CCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC
Confidence 78899987 2567777775 6899999995 45544433211 1133678999998 666653
Q ss_pred -eeeeeeccCeeeeeeccc--cCccccEEEEEeecCCCCCcEEEE-------eeCCCeEEEEecCCCcceecccccceee
Q 025649 144 -MEILDQSGGKRLHLDYSV--GGHTAAASCVAFSMFGERGKYLIS-------GGNDKLVKVWDCSRFQGVQTSINNDLLI 213 (250)
Q Consensus 144 -~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 213 (250)
+..++.. ..+.+..+ ..+...+.+++|+ | +..+.+ ...+..|++||..++ +.+.
T Consensus 219 ~I~~~~~~---~G~~~~~~~~~~~~~~~~~~~~~---p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g---------~~~~ 282 (329)
T 3fvz_A 219 RIQCFKTD---TKEFVREIKHASFGRNVFAISYI---P-GFLFAVNGKPYFGDQEPVQGFVMNFSSG---------EIID 282 (329)
T ss_dssp EEEEEETT---TCCEEEEECCTTTTTCEEEEEEE---T-TEEEEEECCCCTTCSCCCCEEEEETTTC---------CEEE
T ss_pred EEEEEECC---CCcEEEEEeccccCCCcceeeec---C-CEEEEeCCCEEeccCCCcEEEEEEcCCC---------eEEE
Confidence 1223322 12223333 3456678899999 7 333333 334558999999987 4444
Q ss_pred ee---eccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 214 KN---INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 214 ~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.+ ..+...+..++++| +|.++++...++.|++|++
T Consensus 283 ~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 283 VFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp EECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEE
T ss_pred EEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEeC
Confidence 43 35667789999997 8888888888999999985
No 165
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.74 E-value=5.1e-16 Score=117.12 Aligned_cols=144 Identities=14% Similarity=0.073 Sum_probs=101.8
Q ss_pred EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC-ceeEEecCCCcccCCCCCEE-EEEeCCCeEEEEeCC
Q 025649 36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA-FVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIE 113 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~ 113 (250)
+|++++.++.|.+||+.+++.+..+..+ +.. .+..++++| +++.+ +++..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~------------~~~~~~~~~~~s~------dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIA------------DAGPTPMVPMVAP------GGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECT------------TCTTCCCCEEECT------TSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcC------------CCCCCccceEEcC------CCCEEEEEeCCCCeEEEEECC
Confidence 7899999999999999999888777644 111 477899998 88765 555668899999999
Q ss_pred CceeEeeccCCC----CCCccceeecccceeEEEee---------------eeeeccCeeeeeeccccCccccEEEEEee
Q 025649 114 SELNISRSKSTT----KPLKGSQSTSKVNIRDAEME---------------ILDQSGGKRLHLDYSVGGHTAAASCVAFS 174 (250)
Q Consensus 114 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 174 (250)
+++....+.... ...+..++++|+|++++... .....+....+.+..+.. ...+.+++|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s 143 (337)
T 1pby_B 65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA 143 (337)
T ss_dssp TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC
T ss_pred CCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC
Confidence 988776554432 12677899999998887442 111112222223333332 3456788999
Q ss_pred cCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649 175 MFGERGKYLISGGNDKLVKVWDCSRFQGV 203 (250)
Q Consensus 175 p~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 203 (250)
|+|++++++ ++.|++||+.+++..
T Consensus 144 ---~dg~~l~~~--~~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 144 ---RDGSKLYGL--GRDLHVMDPEAGTLV 167 (337)
T ss_dssp ---TTSSCEEEE--SSSEEEEETTTTEEE
T ss_pred ---CCCCEEEEe--CCeEEEEECCCCcEe
Confidence 899988877 688999999887543
No 166
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=137.01 Aligned_cols=197 Identities=10% Similarity=0.088 Sum_probs=127.8
Q ss_pred eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC-
Q 025649 25 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG- 103 (250)
Q Consensus 25 ~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~- 103 (250)
.+++|+|+++ +++++ .|++|++||+.+++....+..+. .....+.+++|+| ||++|+.++.
T Consensus 19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~Sp------Dg~~la~~~~~ 80 (719)
T 1z68_A 19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTILSNRT----------MKSVNASNYGLSP------DRQFVYLESDY 80 (719)
T ss_dssp CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEEECHHH----------HHTTTCSEEEECT------TSSEEEEEEEE
T ss_pred CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEEEcccc----------ccccceeeEEECC------CCCeEEEEecC
Confidence 3789999996 56555 59999999999988765554110 0001378999999 9999998876
Q ss_pred --------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-----eeeccCeeeeeeccccCccccE--
Q 025649 104 --------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-----LDQSGGKRLHLDYSVGGHTAAA-- 168 (250)
Q Consensus 104 --------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~h~~~v-- 168 (250)
++.|++||+.+++....... ...+..++|||||+.++.... ++.......+ ....++...|
T Consensus 81 ~~~~~~s~~~~i~~~d~~~g~~~~~~~l--~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~--l~~~~~~~~v~~ 156 (719)
T 1z68_A 81 SKLWRYSYTATYYIYDLSNGEFVRGNEL--PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQ--ITFNGRENKIFN 156 (719)
T ss_dssp EECSSSCEEEEEEEEETTTTEECCSSCC--CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEE--CCCCCBTTTEEE
T ss_pred ceeEEeecceEEEEEECCCCccccceec--CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEE--EecCCCcCCeEc
Confidence 78999999998876211111 246888999999999985431 2211111111 0112222222
Q ss_pred ---------------EEEEeecCCCCCcEEEEeeCCC----------------------------------eEEEEecCC
Q 025649 169 ---------------SCVAFSMFGERGKYLISGGNDK----------------------------------LVKVWDCSR 199 (250)
Q Consensus 169 ---------------~~~~~~p~~~~~~~l~s~~~d~----------------------------------~i~iwd~~~ 199 (250)
.+++|| |+|++|++++.|. .|++||+.+
T Consensus 157 g~~~~v~~ee~~~~~~~~~wS---PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~ 233 (719)
T 1z68_A 157 GIPDWVYEEEMLATKYALWWS---PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY 233 (719)
T ss_dssp SSCCHHHHHHTTCSSCCEEEC---TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC
T ss_pred ccccceeeeecccCcccEEEC---CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC
Confidence 489999 8999999987652 788999988
Q ss_pred CcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC--C--ceEEEEe
Q 025649 200 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT--S--KVVKVYS 248 (250)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d--~~i~vw~ 248 (250)
+.......- .....+.+|...+..++|+| |++++++... + ..|.+||
T Consensus 234 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 234 PAYVGPQEV-PVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp HHHHCCEEC-CCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEE
T ss_pred CCccceeEc-cCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEc
Confidence 642100000 00012345777899999998 6877766432 2 3477887
No 167
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=8.1e-15 Score=110.50 Aligned_cols=217 Identities=11% Similarity=-0.046 Sum_probs=145.1
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|.+||.++++.+.++. . ......+++++++. ++++...++.|.+||+.+++....+..+... ......
T Consensus 65 ~v~viD~~t~~~~~~i~-~-~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~--------~~~~~p 133 (328)
T 3dsm_A 65 VIFAIDINTFKEVGRIT-G-FTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMD--------MESGST 133 (328)
T ss_dssp EEEEEETTTCCEEEEEE-C-CSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCC--------TTTCBC
T ss_pred EEEEEECcccEEEEEcC-C-CCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCcc--------ccCCCc
Confidence 37899999999999887 3 46678999999985 6666668999999999998877777644100 001134
Q ss_pred eEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeee------------
Q 025649 81 HAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL------------ 147 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 147 (250)
..+++ . +++++++.. .++.|.++|+.+++....+... .....+.++|+|++++.....
T Consensus 134 ~~i~~-~------~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~ 204 (328)
T 3dsm_A 134 EQMVQ-Y------GKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS 204 (328)
T ss_dssp CCEEE-E------TTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE
T ss_pred ceEEE-E------CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcCCCCEEEEECCCccCCccccCCce
Confidence 45555 3 555555554 4899999999998877666543 456789999999977642211
Q ss_pred -eeccCeeeeeeccccCc-cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649 148 -DQSGGKRLHLDYSVGGH-TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 225 (250)
Q Consensus 148 -~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (250)
...+....+....+... ......++++ |+++++..+.. .|.+||..+++... . .........+..+
T Consensus 205 v~~id~~t~~v~~~~~~~~g~~p~~la~~---~d~~~lyv~~~--~v~~~d~~t~~~~~-----~--~~~~~~~~~p~gi 272 (328)
T 3dsm_A 205 LYRIDAETFTVEKQFKFKLGDWPSEVQLN---GTRDTLYWINN--DIWRMPVEADRVPV-----R--PFLEFRDTKYYGL 272 (328)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCEEEEEC---TTSCEEEEESS--SEEEEETTCSSCCS-----S--CSBCCCSSCEEEE
T ss_pred EEEEECCCCeEEEEEecCCCCCceeEEEe---cCCCEEEEEcc--EEEEEECCCCceee-----e--eeecCCCCceEEE
Confidence 11111222222233211 2357899999 88888877654 89999998864210 0 0111124568899
Q ss_pred EecCCCCCeEEEe----eCCceEEEEeC
Q 025649 226 CTTPTESENLVVC----DTSKVVKVYSI 249 (250)
Q Consensus 226 ~~~~~~~~~l~s~----~~d~~i~vw~~ 249 (250)
++.|.++.++++. ..++.|.+||.
T Consensus 273 ~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 273 TVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp EECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred EEcCCCCeEEEEcccccccCCEEEEECC
Confidence 9998667666666 67899999986
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=1.4e-15 Score=117.18 Aligned_cols=215 Identities=9% Similarity=-0.030 Sum_probs=136.1
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|.+||+.+++...... ++...+..+.|+|+++ .|+.++.++.|++||+.+++....+..+ ...+.
T Consensus 62 l~~~d~~~g~~~~lt~-~~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~g~~~~~~~~~-------------~~~~~ 126 (388)
T 3pe7_A 62 YYLLDLNTQVATQLTE-GRGDNTFGGFLSPDDD-ALFYVKDGRNLMRVDLATLEENVVYQVP-------------AEWVG 126 (388)
T ss_dssp EEEEETTTCEEEECCC-SSCBCSSSCEECTTSS-EEEEEETTTEEEEEETTTCCEEEEEECC-------------TTEEE
T ss_pred EEEEeCCCCceEEeee-CCCCCccceEEcCCCC-EEEEEeCCCeEEEEECCCCcceeeeech-------------hhccc
Confidence 6778998998877777 7777777889999999 7999998999999999988766555422 23332
Q ss_pred EE--ecCCCcccCCCCCEEEEE----------------------eCCCeEEEEeCCCceeEeeccCCCCCCccceeecc-
Q 025649 82 AI--AIPDADMLDKTNKICVVA----------------------KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK- 136 (250)
Q Consensus 82 ~~--~~~~~~~~~~~~~~l~~~----------------------~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~- 136 (250)
.. .++| ++++++.. ..+..|.+||+.+++........ ..+..+.|+|
T Consensus 127 ~~~~~~~~------dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~~~~~~sp~ 198 (388)
T 3pe7_A 127 YGTWVANS------DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN--QWLGHPIYRPY 198 (388)
T ss_dssp EEEEEECT------TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES--SCEEEEEEETT
T ss_pred ccceeECC------CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC--ccccccEECCC
Confidence 22 3366 88887643 24578999999988655443332 4678899999
Q ss_pred cceeEEEeeee-------eeccCe-eeeeeccccCcc--ccEEEEEeecCCCCCcEEEEeeC-CC----eEEEEecCCCc
Q 025649 137 VNIRDAEMEIL-------DQSGGK-RLHLDYSVGGHT--AAASCVAFSMFGERGKYLISGGN-DK----LVKVWDCSRFQ 201 (250)
Q Consensus 137 ~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~h~--~~v~~~~~~p~~~~~~~l~s~~~-d~----~i~iwd~~~~~ 201 (250)
+|+.++..... ..+... .......+..+. ..+...+|+ |+|+.|+..+. ++ .|++||+.+++
T Consensus 199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s---pdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 199 DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV---PDGSALVYVSYLKGSPDRFIYSADPETLE 275 (388)
T ss_dssp EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC---TTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC---CCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence 99988753321 111000 011122333333 357788999 89987765443 22 39999999874
Q ss_pred ceecccccceeeeeeccCC---ceeEEEecCCCCCeEEEe---------eCCceEEEEeCC
Q 025649 202 GVQTSINNDLLIKNINLNK---KVNWLCTTPTESENLVVC---------DTSKVVKVYSIS 250 (250)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~---------~~d~~i~vw~~~ 250 (250)
.. .+....++.. ....++|+| ||+.|+.. ..+..|++||+.
T Consensus 276 ~~-------~l~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 276 NR-------QLTSMPACSHLMSNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp EE-------EEEEECCEEEEEECTTSSEEEE-EECCC------------CCCCEEEEEETT
T ss_pred eE-------EEEcCCCceeeeecCCCCeEcc-CCCcceeEeeeccccccCCCCEEEEEecc
Confidence 32 1112211100 012236887 77776643 456789999863
No 169
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.70 E-value=9.3e-15 Score=112.55 Aligned_cols=210 Identities=9% Similarity=0.012 Sum_probs=135.5
Q ss_pred EEEcccceeeeeeccCCCCCeee-----EEEcCCCCeEEEEecC-CC--eEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649 4 IIDIRQHCLYKSLRAGHSSICSS-----VQFIPWKPWEVISGGL-DS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 4 iwd~~~~~~~~~l~~~h~~~v~~-----l~~~~~~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
.+|..++..+..+. .|...... .+|+|||+ .|+.++. +| .|.+||+.+++...... +
T Consensus 14 ~~~~~~g~~~~~lt-~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-~------------ 78 (388)
T 3pe7_A 14 YQDASTGAQVTRLT-PPDVTCHRNYFYQKCFTRDGS-KLLFGGAFDGPWNYYLLDLNTQVATQLTE-G------------ 78 (388)
T ss_dssp EECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTCEEEECCC-S------------
T ss_pred EecCCCCcceEEec-CCcccccchhhcCccCCCCCC-EEEEEEcCCCCceEEEEeCCCCceEEeee-C------------
Confidence 34677888888888 77766655 88999999 6776666 67 48888998877654443 2
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccc--eeecccceeEEEeeeee-----
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS--QSTSKVNIRDAEMEILD----- 148 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----- 148 (250)
+...+..+.|+| +++.|+.++.++.|++||+.+++.......+. ..+.. ..++|+++.++......
T Consensus 79 ~~~~~~~~~~sp------dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~ 151 (388)
T 3pe7_A 79 RGDNTFGGFLSP------DDDALFYVKDGRNLMRVDLATLEENVVYQVPA-EWVGYGTWVANSDCTKLVGIEIRREDWVP 151 (388)
T ss_dssp SCBCSSSCEECT------TSSEEEEEETTTEEEEEETTTCCEEEEEECCT-TEEEEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred CCCCccceEEcC------CCCEEEEEeCCCeEEEEECCCCcceeeeechh-hcccccceeECCCCCeeccccccCccccc
Confidence 123344678998 99999999999999999999987655444332 22222 23488888876321110
Q ss_pred ------------------e--ccCeeeeeeccccCccccEEEEEeecCCC-CCcEEEEeeCC------CeEEEEecCCCc
Q 025649 149 ------------------Q--SGGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGND------KLVKVWDCSRFQ 201 (250)
Q Consensus 149 ------------------~--~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~~~l~s~~~d------~~i~iwd~~~~~ 201 (250)
. .+....+ ...+..+...+..++|+ | +|+.|+..+.+ ..|.++|...+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~s---p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 152 LTDWKKFHEFYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYR---PYDDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp CCSHHHHHHHGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEE---TTEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred ccccchhhhhhccCCcceEEEEECCCCc-eEEeecCCccccccEEC---CCCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 0 0001111 12233455668899999 8 99988877653 378888877642
Q ss_pred ceecccccceeeeeeccC--CceeEEEecCCCCCeEEEeeC-C----ceEEEEeCC
Q 025649 202 GVQTSINNDLLIKNINLN--KKVNWLCTTPTESENLVVCDT-S----KVVKVYSIS 250 (250)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~-d----~~i~vw~~~ 250 (250)
. ..+..+. ..+...+|+| ||+.|+..+. + +.|++||+.
T Consensus 228 ---------~-~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 228 ---------M-RKVKTHAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPE 272 (388)
T ss_dssp ---------C-EESCCCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTT
T ss_pred ---------e-EEeeeCCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecC
Confidence 2 2222333 3577788998 8887755332 2 249999863
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=4.6e-14 Score=106.52 Aligned_cols=217 Identities=10% Similarity=-0.046 Sum_probs=140.1
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
++.| .++....+. .+...+.+++|+|++. +++++..++.|.+||..+++...... . ....+.
T Consensus 29 ~~~~---~~~~~~~~~-~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~~~-~------------~~~~~~ 90 (333)
T 2dg1_A 29 LQTI---TAEPWLEIS-KKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFV-S------------HKANPA 90 (333)
T ss_dssp SCEE---ECEEEEEEE-SSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEE-C------------SSSSEE
T ss_pred Cccc---ccceeEEEe-ccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEEee-C------------CCCCcc
Confidence 3455 345556677 7777889999999998 88888999999999998776544332 1 245789
Q ss_pred EEecCCCcccCCCCCEEEEEeCC----CeEEEEeCCCceeEeecc-CCCCCCccceeecccceeEEEeee-------eee
Q 025649 82 AIAIPDADMLDKTNKICVVAKGD----GVVDVINIESELNISRSK-STTKPLKGSQSTSKVNIRDAEMEI-------LDQ 149 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 149 (250)
+++++| +++++++...+ +.|.+||..++....... ......+..+.++|+|+.+++... ...
T Consensus 91 ~i~~~~------dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l 164 (333)
T 2dg1_A 91 AIKIHK------DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGV 164 (333)
T ss_dssp EEEECT------TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEE
T ss_pred eEEECC------CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceE
Confidence 999998 88888877766 689999998876542222 122356788999999987774321 011
Q ss_pred c--cCeeeeeeccccCccccEEEEEeecCCCCCcEE-EEeeCCCeEEEEecCC-CcceecccccceeeeeeccCCceeEE
Q 025649 150 S--GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSR-FQGVQTSINNDLLIKNINLNKKVNWL 225 (250)
Q Consensus 150 ~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (250)
. .....+ +..+..+...+..++|+ |+|+++ ++.+.++.|.+||+.. +....... ........++ ..+..+
T Consensus 165 ~~~~~~~~~-~~~~~~~~~~~~~i~~~---~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~-~~~~~~~~~~-~~~~~i 238 (333)
T 2dg1_A 165 YYVSPDFRT-VTPIIQNISVANGIALS---TDEKVLWVTETTANRLHRIALEDDGVTIQPFG-ATIPYYFTGH-EGPDSC 238 (333)
T ss_dssp EEECTTSCC-EEEEEEEESSEEEEEEC---TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-EEEEEECCSS-SEEEEE
T ss_pred EEEeCCCCE-EEEeecCCCcccceEEC---CCCCEEEEEeCCCCeEEEEEecCCCcCccccc-ceEEEecCCC-CCCCce
Confidence 1 111001 11111223357889999 888755 5556688999999964 22111000 0011111122 467788
Q ss_pred EecCCCCCeEEEeeCCceEEEEeC
Q 025649 226 CTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 226 ~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
++.+ +|.++++...++.|.+||.
T Consensus 239 ~~d~-~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 239 CIDS-DDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEBT-TCCEEEEEETTTEEEEECT
T ss_pred EECC-CCCEEEEEcCCCEEEEECC
Confidence 8987 7887777777889999985
No 171
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=4e-14 Score=105.18 Aligned_cols=203 Identities=9% Similarity=-0.040 Sum_probs=138.4
Q ss_pred ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649 10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 89 (250)
Q Consensus 10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (250)
+..+..+. .+.....+++|+|+++.+++++..++.|..||..++ ...+... ...+.+++++|
T Consensus 17 ~~~~~~l~-~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~-------------~~~~~~l~~~~-- 78 (296)
T 3e5z_A 17 GAEARRLA-DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHP-------------SHHQNGHCLNK-- 78 (296)
T ss_dssp TCCCEEEE-CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESS-------------CSSEEEEEECT--
T ss_pred CCcEEEEe-cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECC-------------CCCcceeeECC--
Confidence 34445666 666778899999999757888889999999999876 4455422 45688999998
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC---CCCCCccceeecccceeEEEe---ee-----------------
Q 025649 90 MLDKTNKICVVAKGDGVVDVINIESELNISRSKS---TTKPLKGSQSTSKVNIRDAEM---EI----------------- 146 (250)
Q Consensus 90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~----------------- 146 (250)
+++++++...++.|.+||..+++....... .....+..++++|+|+++++. +.
T Consensus 79 ----dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 79 ----QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp ----TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred ----CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcE
Confidence 899888877789999999977765433221 112356789999999988742 11
Q ss_pred -eeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC-CCcceecccccceeeeeeccCCceeE
Q 025649 147 -LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS-RFQGVQTSINNDLLIKNINLNKKVNW 224 (250)
Q Consensus 147 -~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~ 224 (250)
+..... ..+..+..+......++|+ |+|+.+++.+.++.|.+||+. .+.... . ...+..+...+..
T Consensus 155 l~~~~~~---g~~~~~~~~~~~~~gi~~s---~dg~~lv~~~~~~~i~~~~~~~~g~~~~-----~-~~~~~~~~~~p~~ 222 (296)
T 3e5z_A 155 VFRLAPD---GTLSAPIRDRVKPNGLAFL---PSGNLLVSDTGDNATHRYCLNARGETEY-----Q-GVHFTVEPGKTDG 222 (296)
T ss_dssp EEEECTT---SCEEEEECCCSSEEEEEEC---TTSCEEEEETTTTEEEEEEECSSSCEEE-----E-EEEECCSSSCCCS
T ss_pred EEEECCC---CCEEEeecCCCCCccEEEC---CCCCEEEEeCCCCeEEEEEECCCCcCcC-----C-CeEeeCCCCCCCe
Confidence 111111 1112233445567899999 899988778888999999997 332100 0 1111234556778
Q ss_pred EEecCCCCCeEEEeeCCceEEEEeC
Q 025649 225 LCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 225 ~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+++.+ +|+++++. ++.|.+||.
T Consensus 223 i~~d~-~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 223 LRVDA-GGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp EEEBT-TSCEEEEE--TTEEEEECT
T ss_pred EEECC-CCCEEEEc--CCeEEEECC
Confidence 89987 78755555 788999975
No 172
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.69 E-value=5e-14 Score=103.45 Aligned_cols=199 Identities=13% Similarity=0.001 Sum_probs=136.7
Q ss_pred CcEEEEcccceeeeeeccCCC-CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHS-SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
.|++||.++|+.+.++. .+. ..+.++.++|+|+ +|+ +.++.|..||. +++.+..+..+ ....
T Consensus 16 ~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~~------------~~~~ 78 (276)
T 3no2_A 16 KIAIINKDTKEIVWEYP-LEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRELWNIAAP------------AGCE 78 (276)
T ss_dssp EEEEEETTTTEEEEEEE-CCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCEEEEEECC------------TTCE
T ss_pred EEEEEECCCCeEEEEeC-CCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCEEEEEcCC------------CCcc
Confidence 37899999999999999 665 5789999999998 777 34788999999 89988888743 2346
Q ss_pred eeEEecCCCcccCCCCCEEEEEeC-CCeEEEEeCCCceeEeeccCCC-----CCCccceeecccceeEEEee---eeeec
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTT-----KPLKGSQSTSKVNIRDAEME---ILDQS 150 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~ 150 (250)
+.++.+.| +++++++.+. ++.|..+|. +++.+..+.... ......+...++|.++++.. ..-..
T Consensus 79 ~~~~~~~~------dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 79 MQTARILP------DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI 151 (276)
T ss_dssp EEEEEECT------TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEE
T ss_pred ccccEECC------CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEE
Confidence 78888888 9999999887 888888886 566554443211 12344567888999887421 11111
Q ss_pred cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC------CceeE
Q 025649 151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN------KKVNW 224 (250)
Q Consensus 151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~v~~ 224 (250)
+.. .+.+.++... ..+.++... ++|+++++++.+++|..+|..+++.+ -.+.... ..+..
T Consensus 152 d~~-G~~~w~~~~~-~~~~~~~~~---~~g~~~v~~~~~~~v~~~d~~tG~~~---------w~~~~~~~~~~~l~~~~~ 217 (276)
T 3no2_A 152 APN-GQLLNSVKLS-GTPFSSAFL---DNGDCLVACGDAHCFVQLNLESNRIV---------RRVNANDIEGVQLFFVAQ 217 (276)
T ss_dssp CTT-SCEEEEEECS-SCCCEEEEC---TTSCEEEECBTTSEEEEECTTTCCEE---------EEEEGGGSBSCCCSEEEE
T ss_pred CCC-CCEEEEEECC-CCccceeEc---CCCCEEEEeCCCCeEEEEeCcCCcEE---------EEecCCCCCCcccccccc
Confidence 222 3444455443 334566667 89999999998889999999988433 2222211 22556
Q ss_pred EEecCCCCCeEEEe
Q 025649 225 LCTTPTESENLVVC 238 (250)
Q Consensus 225 ~~~~~~~~~~l~s~ 238 (250)
++..+ +|.++++.
T Consensus 218 ~~~~~-~G~i~v~~ 230 (276)
T 3no2_A 218 LFPLQ-NGGLYICN 230 (276)
T ss_dssp EEECT-TSCEEEEE
T ss_pred ceEcC-CCCEEEEe
Confidence 66665 66666555
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=4.3e-15 Score=112.72 Aligned_cols=193 Identities=9% Similarity=0.012 Sum_probs=124.7
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC---C--eEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD---S--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d---g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
|.+||+.+++.. .+ ..+..++|+|+|+ .|+.++.+ + .|.+||+.+++.......
T Consensus 45 l~~~d~~~~~~~-~l-----~~~~~~~~SpDg~-~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-------------- 103 (347)
T 2gop_A 45 IVIENLKNNARR-FI-----ENATMPRISPDGK-KIAFMRANEEKKVSEIWVADLETLSSKKILEA-------------- 103 (347)
T ss_dssp EEEEETTTCCEE-EE-----ESCEEEEECTTSS-EEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--------------
T ss_pred EEEEeCCCCceE-Ec-----ccCCCeEECCCCC-EEEEEEeccCCCcceEEEEECCCCceEEEEcC--------------
Confidence 567788776643 23 3578899999999 67766543 3 477788877765544431
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCC---------------------------CeEEEEeCCCceeEeeccCCCCCCc
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGD---------------------------GVVDVINIESELNISRSKSTTKPLK 129 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d---------------------------~~i~~~d~~~~~~~~~~~~~~~~~~ 129 (250)
.. +..+.|+| +++.|+.++.+ ..|.+||+.+++....+.. . .+
T Consensus 104 ~~-~~~~~wsp------dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~ 173 (347)
T 2gop_A 104 KN-IRSLEWNE------DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RF 173 (347)
T ss_dssp SE-EEEEEECT------TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TT
T ss_pred CC-ccceeECC------CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-Cc
Confidence 23 88999999 99988887642 5799999998876333333 2 67
Q ss_pred cceeecccceeEEEeeeee-----------eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC--------C
Q 025649 130 GSQSTSKVNIRDAEMEILD-----------QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND--------K 190 (250)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d--------~ 190 (250)
..+.|+|+| .+++ +..+ .+..... ....+..+ ..+..+ + |+|++|+.++.+ .
T Consensus 174 ~~~~~spdg-~~~~-~~~~~~~~~~~~~~~l~~~d~~-~~~~l~~~-~~~~~~--s---pdg~~l~~~~~~~~~~~~~~~ 244 (347)
T 2gop_A 174 SSGIWHRDK-IVVN-VPHREIIPQYFKFWDIYIWEDG-KEEKMFEK-VSFYAV--D---SDGERILLYGKPEKKYMSEHN 244 (347)
T ss_dssp CEEEEETTE-EEEE-EECCCSSCCSSCCEEEEEEETT-EEEEEEEE-ESEEEE--E---ECSSCEEEEECCSSSCCCSSC
T ss_pred ccccCCCCe-EEEE-EecccccccccccccEEEeCCC-ceEEeccC-cceeeE--C---CCCCEEEEEEccccCCccccc
Confidence 889999999 5553 2221 1111100 11122223 334443 7 899988877644 3
Q ss_pred eEEEEecCCCcceecccccceeeeeeccCCceeE-EEecCCCCCeEEEeeCCceEEEEeC
Q 025649 191 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 191 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.|.+|| ++ +.......+...+.. +.|+ |+ ++++++.++.++|| +
T Consensus 245 ~l~~~d--~~---------~~~~l~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 245 KLYIYD--GK---------EVMGILDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp EEEEEC--SS---------CEEESSTTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-E
T ss_pred eEEEEC--CC---------ceEeccccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-E
Confidence 688888 43 332333455667776 7786 67 88889999999999 6
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=1e-14 Score=119.98 Aligned_cols=216 Identities=7% Similarity=-0.066 Sum_probs=134.3
Q ss_pred cEEEEcccceeeeeeccCCCCCee---------eEEEc--CCCCeEEEEe-cCCCeEEEEEcc--C-CCCccceecCCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICS---------SVQFI--PWKPWEVISG-GLDSKLVMWDFS--K-GRPNKIVNFGLPE 66 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~---------~l~~~--~~~~~~l~s~-s~dg~v~iwd~~--~-~~~~~~~~~~~~~ 66 (250)
..||....+.....+. .|...+. ...|+ |||+.+|+.+ ..+..|.++++. . ++ ...+...
T Consensus 49 ~~l~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~--- 123 (662)
T 3azo_A 49 ATLVRRRADGAEESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPV--- 123 (662)
T ss_dssp EEEEEECTTSCEEESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCC---
T ss_pred EEEEEECCCCCcceeC-CCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCC---
Confidence 4678755445556676 6766666 66665 9999415444 446677777765 2 33 2333210
Q ss_pred CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC----------CeEEEEeCCC------ceeEeeccCCCCCCcc
Q 025649 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD----------GVVDVINIES------ELNISRSKSTTKPLKG 130 (250)
Q Consensus 67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~------~~~~~~~~~~~~~~~~ 130 (250)
....+...+.+++|+| +|+.|+.++.+ ..|.+||+.+ +...... ......+.
T Consensus 124 -----~~~~~~~~~~~~~~sp------Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~ 191 (662)
T 3azo_A 124 -----SAVGGGLRWADPVLLP------ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS-DDAHRFVT 191 (662)
T ss_dssp -----CCSTTCEEEEEEEEET------TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS-CSCSSEEC
T ss_pred -----ccCCCCccccCcEECC------CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEE-ecCCCccc
Confidence 0000235678899999 99999998877 6899999988 5543332 02235678
Q ss_pred ceeecccceeEEEeeee---------eecc--Ce-ee---eeeccccCccccEEEEEeecCCCCCcEEEEeeCCC--eEE
Q 025649 131 SQSTSKVNIRDAEMEIL---------DQSG--GK-RL---HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK--LVK 193 (250)
Q Consensus 131 ~~~~~~~~~~~~~~~~~---------~~~~--~~-~~---~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~--~i~ 193 (250)
.++|+|||+.++..... ..+. .. .. +......+|...+..++|+ |+|+++++++.++ .|.
T Consensus 192 ~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s---pdg~l~~~~~~~~~~~l~ 268 (662)
T 3azo_A 192 GPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA---PDGSLIVATDRTGWWNLH 268 (662)
T ss_dssp CCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC---TTSCEEEEECTTSSCEEE
T ss_pred CceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC---CCCeEEEEECCCCCeEEE
Confidence 89999999999843311 1111 11 11 2222233456788999999 8999888888888 666
Q ss_pred EEecCCCcceecccccceeeeeeccCCc--------eeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 194 VWDCSRFQGVQTSINNDLLIKNINLNKK--------VNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 194 iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
+||+.++... .....+... +..++++| +++++++++. +.++||.
T Consensus 269 ~~~~~~~~~~---------~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 269 RVDPATGAAT---------QLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp EECTTTCCEE---------ESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEE
T ss_pred EEECCCCcee---------ecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEE
Confidence 6676555321 111112111 45678876 7888888888 9999994
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.67 E-value=1.1e-14 Score=121.37 Aligned_cols=199 Identities=10% Similarity=0.011 Sum_probs=126.3
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 100 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 100 (250)
......+.|+|+++ +++++ |++|++||+.+++....+..+.. .........+.|+| |+++|+.
T Consensus 16 ~~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~Sp------dg~~l~~ 78 (740)
T 4a5s_A 16 RLKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVFLENSTF--------DEFGHSINDYSISP------DGQFILL 78 (740)
T ss_dssp CCCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEEECTTTT--------TTCCSCCCEEEECT------TSSEEEE
T ss_pred cccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEEEechhh--------hhhcccccceEECC------CCCEEEE
Confidence 34567899999998 78886 89999999999987655542200 00111224578898 9999999
Q ss_pred EeCC---------CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec--cCeeeee-eccccCccccE
Q 025649 101 AKGD---------GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS--GGKRLHL-DYSVGGHTAAA 168 (250)
Q Consensus 101 ~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~h~~~v 168 (250)
++.+ +.+.+||+.+++...... ....+...+|||||+.++.+...+.. .....+. ..+..++...+
T Consensus 79 ~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~--~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~ 156 (740)
T 4a5s_A 79 EYNYVKQWRHSYTASYDIYDLNKRQLITEER--IPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDII 156 (740)
T ss_dssp EEEEEECSSSCEEEEEEEEETTTTEECCSSC--CCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred EECCeeeEEEccceEEEEEECCCCcEEEccc--CCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccce
Confidence 9876 566799999987554222 23568899999999999854322211 1111111 11122332222
Q ss_pred -----------------EEEEeecCCCCCcEEEEeeCCC------------------------------------eEEEE
Q 025649 169 -----------------SCVAFSMFGERGKYLISGGNDK------------------------------------LVKVW 195 (250)
Q Consensus 169 -----------------~~~~~~p~~~~~~~l~s~~~d~------------------------------------~i~iw 195 (250)
..+.|| |||+.|+.++.|. .|++|
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~wS---pDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWWS---PNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEEC---TTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred ecCcccccccchhcCCCcceEEC---CCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 348899 8999999876432 46667
Q ss_pred ecCC---Ccceecccccceeeeee------ccCCceeEEEecCCCCCeEEEee----CCceEEEEeC
Q 025649 196 DCSR---FQGVQTSINNDLLIKNI------NLNKKVNWLCTTPTESENLVVCD----TSKVVKVYSI 249 (250)
Q Consensus 196 d~~~---~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~----~d~~i~vw~~ 249 (250)
|+.+ +... .. ..+. +|...+..++|+| ||+.++... .+..|++||+
T Consensus 234 d~~~~~~~~~~------~~-~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~ 292 (740)
T 4a5s_A 234 NTDSLSSVTNA------TS-IQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDY 292 (740)
T ss_dssp ETTSCCSSSCC------CE-EEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEE
T ss_pred ECCCCCCCCcc------eE-EEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEEC
Confidence 7766 5210 01 1111 3667789999998 888655532 3447999985
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.66 E-value=2.1e-13 Score=100.71 Aligned_cols=200 Identities=11% Similarity=0.063 Sum_probs=133.5
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEec-CCCcccCCCCCE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI-PDADMLDKTNKI 97 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~ 97 (250)
++-....++++++++. ++++...++.|.+||.. ++.+..+.... ....+...+.++++ .+ ++++
T Consensus 27 g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~~~-------~~~~~~~~p~~i~~~~~------~g~l 91 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGECG-------KRDSQLLYPNRVAVVRN------SGDI 91 (286)
T ss_dssp TCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBS-------SSTTCBSSEEEEEEETT------TTEE
T ss_pred CccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecccC-------CCcccccCceEEEEEcC------CCeE
Confidence 4556789999999998 88888889999999986 55554443110 00012245788888 45 6777
Q ss_pred EEEEeC-CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeeecccc--CccccEEEE
Q 025649 98 CVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVG--GHTAAASCV 171 (250)
Q Consensus 98 l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~h~~~v~~~ 171 (250)
+++... ++.|.+|| .+++....+.......+..++++|+|+.+++.. .....+. ..+.+..+. .+...+.++
T Consensus 92 ~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i 169 (286)
T 1q7f_A 92 IVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGV 169 (286)
T ss_dssp EEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEE
T ss_pred EEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEE
Confidence 666643 89999999 455555544433335678899999998776421 1111111 111222222 344568999
Q ss_pred EeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc--CCceeEEEecCCCCCeEEEeeCCc-eEEEEe
Q 025649 172 AFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL--NKKVNWLCTTPTESENLVVCDTSK-VVKVYS 248 (250)
Q Consensus 172 ~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~-~i~vw~ 248 (250)
+++ ++|+++++.+.++.|++||... ..+..+..+ ...+..+++.+ +|+++++...++ .|.+||
T Consensus 170 ~~~---~~g~l~v~~~~~~~i~~~~~~g----------~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 170 VVN---DKQEIFISDNRAHCVKVFNYEG----------QYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp EEC---SSSEEEEEEGGGTEEEEEETTC----------CEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEEC
T ss_pred EEC---CCCCEEEEECCCCEEEEEcCCC----------CEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEEC
Confidence 999 8899888888899999999754 233333222 35688999997 788888877775 999998
Q ss_pred C
Q 025649 249 I 249 (250)
Q Consensus 249 ~ 249 (250)
.
T Consensus 236 ~ 236 (286)
T 1q7f_A 236 Q 236 (286)
T ss_dssp T
T ss_pred C
Confidence 4
No 177
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=2.7e-13 Score=99.18 Aligned_cols=212 Identities=8% Similarity=-0.062 Sum_probs=134.4
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|.+||..++....... .+...+.++++++++. ++++.. ++.|.+||...... ..+... ....+.
T Consensus 48 i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~-~~~~~~------------~~~~p~ 111 (270)
T 1rwi_B 48 VVKLATGSTGTTVLPF-NGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQ-TVLPFD------------GLNYPE 111 (270)
T ss_dssp EEEECC-----EECCC-CSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCC-EECCCC------------SCSSEE
T ss_pred EEEecCCCcccceEee-CCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceE-eeeecC------------CcCCCc
Confidence 4566655443322222 3445788999999998 677766 88999999865432 222211 124578
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeee
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLD 158 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 158 (250)
++++.| +++++++...++.|.+|+..+....... .........++++++|+.+++.. .............
T Consensus 112 ~i~~~~------~g~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~ 184 (270)
T 1rwi_B 112 GLAVDT------QGAVYVADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV 184 (270)
T ss_dssp EEEECT------TCCEEEEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred ceEECC------CCCEEEEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE
Confidence 899998 8888888778899999987654433221 11124678899999998666321 1111111111111
Q ss_pred ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649 159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 238 (250)
Q Consensus 159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 238 (250)
.....+...+.+++++ ++|+++++...++.|.+||..... .......+...+..+++.+ +|+++++.
T Consensus 185 ~~~~~~~~~p~~i~~d---~~g~l~v~~~~~~~v~~~~~~~~~---------~~~~~~~~~~~p~~i~~~~-~g~l~v~~ 251 (270)
T 1rwi_B 185 VLPFTDITAPWGIAVD---EAGTVYVTEHNTNQVVKLLAGSTT---------STVLPFTGLNTPLAVAVDS-DRTVYVAD 251 (270)
T ss_dssp ECCCSSCCSEEEEEEC---TTCCEEEEETTTSCEEEECTTCSC---------CEECCCCSCSCEEEEEECT-TCCEEEEE
T ss_pred eecccCCCCceEEEEC---CCCCEEEEECCCCcEEEEcCCCCc---------ceeeccCCCCCceeEEECC-CCCEEEEE
Confidence 1112233568899999 888888888788999999987642 1111122335688999987 78888888
Q ss_pred eCCceEEEEeC
Q 025649 239 DTSKVVKVYSI 249 (250)
Q Consensus 239 ~~d~~i~vw~~ 249 (250)
..++.|+++++
T Consensus 252 ~~~~~v~~~~~ 262 (270)
T 1rwi_B 252 RGNDRVVKLTS 262 (270)
T ss_dssp GGGTEEEEECC
T ss_pred CCCCEEEEEcC
Confidence 88999999986
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.65 E-value=9.9e-15 Score=112.57 Aligned_cols=221 Identities=5% Similarity=-0.087 Sum_probs=130.4
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC-Cc-
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP-AF- 79 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 79 (250)
|.+||+.+++...... ++......+.|+|+|+ .|+.++.++.|.+||+.+++.......+.........+.+.. ..
T Consensus 62 l~~~d~~~~~~~~l~~-~~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 139 (396)
T 3c5m_A 62 YYLLNLETQQAVQLTE-GKGDNTFGGFISTDER-AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL 139 (396)
T ss_dssp EEEEETTTTEEEECCC-SSCBCTTTCEECTTSS-EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred EEEEECCCCcEEEeec-CCCCccccceECCCCC-EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence 5678888887654444 4443344588999999 788888888999999988775544432200000000000000 00
Q ss_pred ----eeEEecCCCcccCCCCCEEEEE-----eCCCeEEEEeCCCceeEeeccCCCCCCccceeecc-cceeEEEeeeeee
Q 025649 80 ----VHAIAIPDADMLDKTNKICVVA-----KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEILDQ 149 (250)
Q Consensus 80 ----v~~~~~~~~~~~~~~~~~l~~~-----~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 149 (250)
.....++| +++.++.. ..+..|.+||+.+++....... ...+..+.|+| ++..++.... +.
T Consensus 140 ~~~~~~~~~~sp------dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~--~~~~~~~~~sp~dg~~l~~~~~-~~ 210 (396)
T 3c5m_A 140 VGIEILKRDWQP------LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD--TAWLGHPIYRPFDDSTVGFCHE-GP 210 (396)
T ss_dssp EEEEEEGGGCCC------CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE--SSCEEEEEEETTEEEEEEEEEC-SC
T ss_pred ccccccccccCC------CCcceeeeeeccCCCcceEEEEECCCCcEEeeccC--CcccccceECCCCCCEEEEEec-CC
Confidence 00034566 77776654 4667899999998775544322 35678899999 8887764332 11
Q ss_pred c--------c--CeeeeeeccccCc--cccEEEEEeecCCCCCcEEEEeeCC-----CeEEEEecCCCcceeccccccee
Q 025649 150 S--------G--GKRLHLDYSVGGH--TAAASCVAFSMFGERGKYLISGGND-----KLVKVWDCSRFQGVQTSINNDLL 212 (250)
Q Consensus 150 ~--------~--~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~ 212 (250)
. . .... ....+..+ ...+..++|+ |+|++|+.++.+ +.|++||+.++... .+
T Consensus 211 ~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~s---pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-------~l 279 (396)
T 3c5m_A 211 HDLVDARMWLVNEDGS-NVRKIKEHAEGESCTHEFWI---PDGSAMAYVSYFKGQTDRVIYKANPETLENE-------EV 279 (396)
T ss_dssp SSSCSCCCEEEETTSC-CCEESSCCCTTEEEEEEEEC---TTSSCEEEEEEETTTCCEEEEEECTTTCCEE-------EE
T ss_pred CCCCCceEEEEECCCC-ceeEeeccCCCccccceEEC---CCCCEEEEEecCCCCccceEEEEECCCCCeE-------Ee
Confidence 1 0 0011 11122222 2357889999 899987776543 45999999886321 11
Q ss_pred eeeeccCCceeEEEecCCCCCeEEEee----------------CCceEEEEeC
Q 025649 213 IKNINLNKKVNWLCTTPTESENLVVCD----------------TSKVVKVYSI 249 (250)
Q Consensus 213 ~~~~~~~~~v~~~~~~~~~~~~l~s~~----------------~d~~i~vw~~ 249 (250)
.. .. ... +.|+|.||+++++++ .++.|++||+
T Consensus 280 ~~---~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 280 MV---MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EE---CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred ee---CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 11 11 122 778865788777654 3478999986
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=2.1e-14 Score=118.09 Aligned_cols=200 Identities=8% Similarity=-0.057 Sum_probs=124.2
Q ss_pred eeeeeeccC-----CCCCeeeEEEcCCCCeEEEEecCC----------CeEEEEEccC------CCCccceecCCCCCCC
Q 025649 11 CLYKSLRAG-----HSSICSSVQFIPWKPWEVISGGLD----------SKLVMWDFSK------GRPNKIVNFGLPENNG 69 (250)
Q Consensus 11 ~~~~~l~~~-----h~~~v~~l~~~~~~~~~l~s~s~d----------g~v~iwd~~~------~~~~~~~~~~~~~~~~ 69 (250)
.....+. . |...+..++|+|||+ .|++++.+ ..|.+||+.+ ++.......
T Consensus 115 ~~~~~l~-~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~------- 185 (662)
T 3azo_A 115 AVPRPLT-PVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDD------- 185 (662)
T ss_dssp CCCEECS-CCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCS-------
T ss_pred CCCEecc-CCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEec-------
Confidence 4445666 4 677899999999999 78887766 5899999987 443222201
Q ss_pred CCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC--------CeEEEEeCC-Cce--eEeeccCCCCCCccceeecccc
Q 025649 70 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD--------GVVDVINIE-SEL--NISRSKSTTKPLKGSQSTSKVN 138 (250)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d--------~~i~~~d~~-~~~--~~~~~~~~~~~~~~~~~~~~~~ 138 (250)
+...+..++|+| ||++|+.++.+ ..|.+||+. ++. ....+.......+..+.|+|||
T Consensus 186 ------~~~~~~~~~~Sp------DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg 253 (662)
T 3azo_A 186 ------AHRFVTGPRLSP------DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG 253 (662)
T ss_dssp ------CSSEECCCEECT------TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred ------CCCcccCceECC------CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence 245678889999 99999888754 489999998 561 2223322223577889999999
Q ss_pred eeEEEeeeeee----c--cCeeeeeeccccCcccc--------EEEEEeecCCCCCcEEEEeeCCCeEEEE--ecCCCcc
Q 025649 139 IRDAEMEILDQ----S--GGKRLHLDYSVGGHTAA--------ASCVAFSMFGERGKYLISGGNDKLVKVW--DCSRFQG 202 (250)
Q Consensus 139 ~~~~~~~~~~~----~--~~~~~~~~~~~~~h~~~--------v~~~~~~p~~~~~~~l~s~~~d~~i~iw--d~~~~~~ 202 (250)
+++++ ...+. + +....+.......+... +..++|+ ++++++++++. +.++|| |+.++
T Consensus 254 ~l~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~---~~~~~~~~~~~-~~~~l~~~d~~~~-- 326 (662)
T 3azo_A 254 SLIVA-TDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPL---ANGLIAVVHGK-GAAVLGILDPESG-- 326 (662)
T ss_dssp CEEEE-ECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEEC---TTSCEEEEEBS-SSCEEEEEETTTT--
T ss_pred eEEEE-ECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEe---CCCEEEEEEEc-CccEEEEEECCCC--
Confidence 95553 22221 1 11111111112222221 4578888 88999999998 999999 55554
Q ss_pred eecccccceeeeeeccCCceeEE-EecCCCCCeEEEeeCCceEEEE
Q 025649 203 VQTSINNDLLIKNINLNKKVNWL-CTTPTESENLVVCDTSKVVKVY 247 (250)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~s~~~d~~i~vw 247 (250)
. +..+..|...+..+ .+.+ +.-++++++.+....+|
T Consensus 327 -------~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 327 -------E-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAYEVV 363 (662)
T ss_dssp -------E-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEEEEE
T ss_pred -------c-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCCEEE
Confidence 2 34455566667666 4432 22233445556555555
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=9.6e-13 Score=105.72 Aligned_cols=214 Identities=11% Similarity=0.017 Sum_probs=140.1
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc--CCCCccceecCCCCCCCCCCcccCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS--KGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|.++|..+++.+.++. . ...+..+.|+|+|+ ++++++.|+.|.+||+. +++.+..+..+ .
T Consensus 178 ~V~viD~~t~~v~~~i~-~-g~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--------------~ 240 (567)
T 1qks_A 178 QIALIDGSTYEIKTVLD-T-GYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--------------S 240 (567)
T ss_dssp EEEEEETTTCCEEEEEE-C-SSCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCEEEEEECC--------------S
T ss_pred eEEEEECCCCeEEEEEe-C-CCCccceEECCCCC-EEEEEcCCCeEEEEECCCCCCcEeEEEecC--------------C
Confidence 47899999999999998 3 33567999999999 78888899999999995 77777777644 3
Q ss_pred ceeEEecC----CCcccCCCCCEEEEEe-CCCeEEEEeCCCceeEeeccCCC----------CCCccceeecccceeEEE
Q 025649 79 FVHAIAIP----DADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTT----------KPLKGSQSTSKVNIRDAE 143 (250)
Q Consensus 79 ~v~~~~~~----~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 143 (250)
....++++ | +|++++++. .++.|.++|..+.+.+..+.... ...+..+..++++..++.
T Consensus 241 ~P~~ia~s~~~~p------DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv 314 (567)
T 1qks_A 241 EARSIETSKMEGW------EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 314 (567)
T ss_dssp EEEEEEECCSTTC------TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred CCceeEEccccCC------CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEE
Confidence 45788999 7 898887776 45999999999987776544321 124556777777655442
Q ss_pred e-------eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCcceecccccceeee-
Q 025649 144 M-------EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIK- 214 (250)
Q Consensus 144 ~-------~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~- 214 (250)
. ...+........ +..+. .......+.|+ |+|+++++++ .++.|.++|+.+++... .+..
T Consensus 315 ~~~~~g~v~~vd~~~~~~~~-v~~i~-~~~~~~d~~~~---pdgr~~~va~~~sn~V~ViD~~t~kl~~------~i~vg 383 (567)
T 1qks_A 315 NVKETGKILLVDYTDLNNLK-TTEIS-AERFLHDGGLD---GSHRYFITAANARNKLVVIDTKEGKLVA------IEDTG 383 (567)
T ss_dssp EETTTTEEEEEETTCSSEEE-EEEEE-CCSSEEEEEEC---TTSCEEEEEEGGGTEEEEEETTTTEEEE------EEECS
T ss_pred EecCCCeEEEEecCCCccce-eeeee-ccccccCceEC---CCCCEEEEEeCCCCeEEEEECCCCcEEE------EEecc
Confidence 1 112221111111 11221 22345678899 8999887665 57899999999974321 1111
Q ss_pred -eeccCCceeEEEecCCCCCeEEEee-CCceEEEEeC
Q 025649 215 -NINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI 249 (250)
Q Consensus 215 -~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~ 249 (250)
...|.+.-..+ ++|..+..++++. .++.|.++|.
T Consensus 384 g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 384 GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecC
Confidence 12343322122 4553355555553 4688999985
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=6.9e-13 Score=98.47 Aligned_cols=205 Identities=8% Similarity=-0.110 Sum_probs=131.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|..||..++ ...+. .+...+.+++++|+|. ++++...++.|.+||..+++......... . .....+.
T Consensus 52 i~~~~~~~~--~~~~~-~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~~~~~~~~~~-------~--~~~~~~~ 118 (296)
T 3e5z_A 52 TWAWSDDGQ--LSPEM-HPSHHQNGHCLNKQGH-LIACSHGLRRLERQREPGGEWESIADSFE-------G--KKLNSPN 118 (296)
T ss_dssp EEEEETTSC--EEEEE-SSCSSEEEEEECTTCC-EEEEETTTTEEEEECSTTCCEEEEECEET-------T--EECCCCC
T ss_pred EEEEECCCC--eEEEE-CCCCCcceeeECCCCc-EEEEecCCCeEEEEcCCCCcEEEEeeccC-------C--CCCCCCC
Confidence 677888776 56676 6778899999999998 78887778999999998776433221100 0 0112456
Q ss_pred EEecCCCcccCCCCCEEEEE----e-------------CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe
Q 025649 82 AIAIPDADMLDKTNKICVVA----K-------------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 144 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~----~-------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (250)
.+++.| +|+++++. . ..+.|..++.. ++..... ........++++|+|+.+++.
T Consensus 119 ~i~~d~------~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~~~~~~~gi~~s~dg~~lv~~ 189 (296)
T 3e5z_A 119 DVCLAP------DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI--RDRVKPNGLAFLPSGNLLVSD 189 (296)
T ss_dssp CEEECT------TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE--CCCSSEEEEEECTTSCEEEEE
T ss_pred CEEECC------CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee--cCCCCCccEEECCCCCEEEEe
Confidence 788888 89988873 2 13466666665 4332222 122456789999999987431
Q ss_pred ------eeeeeccCeee-eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec
Q 025649 145 ------EILDQSGGKRL-HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 217 (250)
Q Consensus 145 ------~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 217 (250)
..++....... .....+..+...+.+++++ ++|+++++. ++.|.+||... +.+..+..
T Consensus 190 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d---~~G~l~v~~--~~~v~~~~~~g----------~~~~~~~~ 254 (296)
T 3e5z_A 190 TGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD---AGGLIWASA--GDGVHVLTPDG----------DELGRVLT 254 (296)
T ss_dssp TTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEB---TTSCEEEEE--TTEEEEECTTS----------CEEEEEEC
T ss_pred CCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEEC---CCCCEEEEc--CCeEEEECCCC----------CEEEEEEC
Confidence 12222211111 0011122344556789999 899877766 78999999874 44455555
Q ss_pred cCCceeEEEecCCCCCeEEEeeCCceE
Q 025649 218 LNKKVNWLCTTPTESENLVVCDTSKVV 244 (250)
Q Consensus 218 ~~~~v~~~~~~~~~~~~l~s~~~d~~i 244 (250)
+.. +.+++|..++++.|++++.++..
T Consensus 255 ~~~-~~~~~f~~~d~~~L~v~t~~~l~ 280 (296)
T 3e5z_A 255 PQT-TSNLCFGGPEGRTLYMTVSTEFW 280 (296)
T ss_dssp SSC-CCEEEEESTTSCEEEEEETTEEE
T ss_pred CCC-ceeEEEECCCCCEEEEEcCCeEE
Confidence 666 88999954488888888877533
No 182
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.61 E-value=1.1e-13 Score=101.56 Aligned_cols=178 Identities=8% Similarity=-0.072 Sum_probs=125.8
Q ss_pred EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc
Q 025649 36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 115 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 115 (250)
+|++++.|+.|.+||.++|+.+..+..+ ....++++.+.| +|++++ +.++.|..||. ++
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~~~~~------------~~~~~~~~~~~p------dG~ilv--s~~~~V~~~d~-~G 65 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWEYPLE------------KGWECNSVAATK------AGEILF--SYSKGAKMITR-DG 65 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEEEECC------------TTCCCCEEEECT------TSCEEE--ECBSEEEEECT-TS
T ss_pred EEEeeCCCCEEEEEECCCCeEEEEeCCC------------ccCCCcCeEECC------CCCEEE--eCCCCEEEECC-CC
Confidence 8999999999999999999999888744 113578889998 999888 45788999999 78
Q ss_pred eeEeeccCCCCCCccceeecccceeEEEeeeeeecc---Ceeeeeeccc------cCccccEEEEEeecCCCCCcEEEEe
Q 025649 116 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG---GKRLHLDYSV------GGHTAAASCVAFSMFGERGKYLISG 186 (250)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~h~~~v~~~~~~p~~~~~~~l~s~ 186 (250)
+.+..+.......+.++.+.++|+.+++....+... ....+.+.++ ..+......+++. ++|+++++.
T Consensus 66 ~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~---~~G~~lv~~ 142 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKN---KKGNYLVPL 142 (276)
T ss_dssp CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEEC---TTSCEEEEE
T ss_pred CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceEC---CCCCEEEEe
Confidence 888777765445677888999999988532201110 0111222221 1222234455667 899999999
Q ss_pred eCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 187 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 187 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
..++.|..||.. + +.+-.+... ..+.++...+ ++.++++++.++.|..+|.
T Consensus 143 ~~~~~v~~~d~~-G---------~~~w~~~~~-~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 143 FATSEVREIAPN-G---------QLLNSVKLS-GTPFSSAFLD-NGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp TTTTEEEEECTT-S---------CEEEEEECS-SCCCEEEECT-TSCEEEECBTTSEEEEECT
T ss_pred cCCCEEEEECCC-C---------CEEEEEECC-CCccceeEcC-CCCEEEEeCCCCeEEEEeC
Confidence 999999999998 6 443333332 3455666666 7888888888888888874
No 183
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.60 E-value=1.1e-12 Score=98.81 Aligned_cols=197 Identities=9% Similarity=-0.015 Sum_probs=130.4
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCC------------------------CeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLD------------------------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
--+.+.+|+++|+|+ ++++.+.+ ++|.+||..+++.+..+..+
T Consensus 22 ~l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------ 88 (329)
T 3fvz_A 22 LPGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN------------ 88 (329)
T ss_dssp CCSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT------------
T ss_pred ecCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC------------
Confidence 346799999999998 78887777 47999999888876554322
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce-eEeecc--------CCCCCCccceeecc-cceeEEEee
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL-NISRSK--------STTKPLKGSQSTSK-VNIRDAEME 145 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~ 145 (250)
+......+++.| +++++++...++.|++||..... .+..+. .........++++| ++..+++..
T Consensus 89 ~~~~p~gia~d~------~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~ 162 (329)
T 3fvz_A 89 LFYLPHGLSIDT------DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG 162 (329)
T ss_dssp TCSSEEEEEECT------TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC
T ss_pred ccCCceEEEECC------CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC
Confidence 234678899998 89988888889999999987542 222221 11223577899999 777776432
Q ss_pred eeeecc---Ceeeeeecccc----------CccccEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCCcceecccccce
Q 025649 146 ILDQSG---GKRLHLDYSVG----------GHTAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 211 (250)
Q Consensus 146 ~~~~~~---~~~~~~~~~~~----------~h~~~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 211 (250)
..+... ......+..+. ++......++++ |+ ++++++...+++|++||..++ +.
T Consensus 163 ~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d---~~~g~l~v~d~~~~~I~~~~~~~G---------~~ 230 (329)
T 3fvz_A 163 YCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALV---PHLDQLCVADRENGRIQCFKTDTK---------EF 230 (329)
T ss_dssp SSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEE---TTTTEEEEEETTTTEEEEEETTTC---------CE
T ss_pred CCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEE---CCCCEEEEEECCCCEEEEEECCCC---------cE
Confidence 111111 01112222222 233447899999 77 888888888999999999976 33
Q ss_pred eeee--eccCCceeEEEecCCCCCeEEE-------eeCCceEEEEeC
Q 025649 212 LIKN--INLNKKVNWLCTTPTESENLVV-------CDTSKVVKVYSI 249 (250)
Q Consensus 212 ~~~~--~~~~~~v~~~~~~~~~~~~l~s-------~~~d~~i~vw~~ 249 (250)
+..+ ..+...+..+++.| +..+.+ ...+..|++|++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~ 275 (329)
T 3fvz_A 231 VREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNF 275 (329)
T ss_dssp EEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEET
T ss_pred EEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEc
Confidence 3333 24556778888876 322333 233457888885
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.60 E-value=8.6e-12 Score=94.03 Aligned_cols=204 Identities=8% Similarity=0.021 Sum_probs=129.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC----CeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|.+||.++++...... .+...+.+++++|++. ++++...+ +.|.+||..+++....+... ...
T Consensus 68 i~~~d~~~~~~~~~~~-~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----------~~~ 134 (333)
T 2dg1_A 68 IFKINPETKEIKRPFV-SHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-----------STA 134 (333)
T ss_dssp EEEECTTTCCEEEEEE-CSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSS-----------SSC
T ss_pred EEEEeCCCCcEEEEee-CCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccC-----------ccC
Confidence 6788888877665554 5677899999999998 77777666 68999999876654232211 023
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeC------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee------
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKG------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ 145 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 145 (250)
..+.++++.| +++++++... .+.|..+|..+++....... ......++++|+|+.+....
T Consensus 135 ~~~~~i~~d~------~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~i 206 (333)
T 2dg1_A 135 YCIDDMVFDS------KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKVLWVTETTANRL 206 (333)
T ss_dssp CCEEEEEECT------TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred CcccceEECC------CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCCCEEEEEeCCCCeE
Confidence 4688899998 8888777654 36677777765543322211 13467889999997554221
Q ss_pred -eeeecc-Ceeee-----eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc
Q 025649 146 -ILDQSG-GKRLH-----LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 218 (250)
Q Consensus 146 -~~~~~~-~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 218 (250)
.++... ..... ....+.++ ..+..++++ ++|+++++...++.|.+||... ..+..+..+
T Consensus 207 ~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d---~~G~l~v~~~~~~~v~~~d~~g----------~~~~~~~~~ 272 (333)
T 2dg1_A 207 HRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCID---SDDNLYVAMYGQGRVLVFNKRG----------YPIGQILIP 272 (333)
T ss_dssp EEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEB---TTCCEEEEEETTTEEEEECTTS----------CEEEEEECT
T ss_pred EEEEecCCCcCcccccceEEEecCCC-CCCCceEEC---CCCCEEEEEcCCCEEEEECCCC----------CEEEEEEcC
Confidence 222211 11111 11122233 467889999 8999888888889999999853 222333322
Q ss_pred C------CceeEEEecCCCCCeEEEeeCC
Q 025649 219 N------KKVNWLCTTPTESENLVVCDTS 241 (250)
Q Consensus 219 ~------~~v~~~~~~~~~~~~l~s~~~d 241 (250)
. ..+..++|.| |++.|+.++.+
T Consensus 273 ~~~~g~~~~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp TGGGTCSCBCCEEEECT-TSCEEEEEEEC
T ss_pred CCccccccCcceEEECC-CCCEEEEEeCc
Confidence 2 2688899986 76666655444
No 185
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.59 E-value=9.4e-14 Score=107.09 Aligned_cols=205 Identities=9% Similarity=0.018 Sum_probs=126.5
Q ss_pred EEEcccceeeeeeccCCCCC-----eeeEEEcCCCCeEEEEe-cCC--CeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649 4 IIDIRQHCLYKSLRAGHSSI-----CSSVQFIPWKPWEVISG-GLD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 4 iwd~~~~~~~~~l~~~h~~~-----v~~l~~~~~~~~~l~s~-s~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
..|..+++.+..+. .+... +..++|+|+|+ .|+.. ..+ ..|.+||+.+++...... +
T Consensus 14 ~~d~~~g~~~~~l~-~~~~~~~~~~~~~~~~SpdG~-~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~------------ 78 (396)
T 3c5m_A 14 FVDSDTQVKVTRLT-PTDIICHRNYFYQKCFTQDGK-KLLFAGDFDGNRNYYLLNLETQQAVQLTE-G------------ 78 (396)
T ss_dssp EECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTTEEEECCC-S------------
T ss_pred eecCCCCcceEEEe-cCCCCccceeeecCcCCCCCC-EEEEEEecCCCceEEEEECCCCcEEEeec-C------------
Confidence 34778888888887 55444 78899999999 55554 333 478888988776433322 1
Q ss_pred CCCc-eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccc-------------------eeec
Q 025649 76 NPAF-VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS-------------------QSTS 135 (250)
Q Consensus 76 ~~~~-v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-------------------~~~~ 135 (250)
... ...+.|+| ++++|+.++.++.|.+||+.+++.......+. ..... ..++
T Consensus 79 -~~~~~~~~~~sp------dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~~~~~~~~~~~s 150 (396)
T 3c5m_A 79 -KGDNTFGGFIST------DERAFFYVKNELNLMKVDLETLEEQVIYTVDE-EWKGYGTWVANSDCTKLVGIEILKRDWQ 150 (396)
T ss_dssp -SCBCTTTCEECT------TSSEEEEEETTTEEEEEETTTCCEEEEEECCT-TEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred -CCCccccceECC------CCCEEEEEEcCCcEEEEECCCCCcEEEEeccc-ccCCCCCEEEeccCCccccccccccccC
Confidence 122 22367888 99999999999999999999876544333221 11111 3556
Q ss_pred ccceeEEE-----------eeeeeeccCeeeeeeccccCccccEEEEEeecCCC-CCcEEEEeeCC------CeEEEEec
Q 025649 136 KVNIRDAE-----------MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGND------KLVKVWDC 197 (250)
Q Consensus 136 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~~~l~s~~~d------~~i~iwd~ 197 (250)
|+++.++. +..++...... ..+..+...+..+.|+ | ++..|+..+.+ ..|.+||+
T Consensus 151 pdg~~~~~~~~~~~~~~~~l~~~d~~~g~~----~~~~~~~~~~~~~~~s---p~dg~~l~~~~~~~~~~~~~~l~~~d~ 223 (396)
T 3c5m_A 151 PLTSWEKFAEFYHTNPTCRLIKVDIETGEL----EVIHQDTAWLGHPIYR---PFDDSTVGFCHEGPHDLVDARMWLVNE 223 (396)
T ss_dssp CCCSHHHHHHHHHTCCCEEEEEEETTTCCE----EEEEEESSCEEEEEEE---TTEEEEEEEEECSCSSSCSCCCEEEET
T ss_pred CCCcceeeeeeccCCCcceEEEEECCCCcE----EeeccCCcccccceEC---CCCCCEEEEEecCCCCCCCceEEEEEC
Confidence 66654431 11122211111 1122355678899999 8 78777665543 46888888
Q ss_pred CCCcceecccccceeeeeecc--CCceeEEEecCCCCCeEEEeeCC-----ceEEEEeC
Q 025649 198 SRFQGVQTSINNDLLIKNINL--NKKVNWLCTTPTESENLVVCDTS-----KVVKVYSI 249 (250)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d-----~~i~vw~~ 249 (250)
..+. . .....+ ...+..++|+| ||+.|+.++.+ +.|++||+
T Consensus 224 ~~~~---------~-~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 224 DGSN---------V-RKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp TSCC---------C-EESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECT
T ss_pred CCCc---------e-eEeeccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEEC
Confidence 7652 1 112222 23577889998 88877766543 55999986
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=8.1e-13 Score=109.63 Aligned_cols=216 Identities=6% Similarity=-0.040 Sum_probs=134.9
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCe----------------EEEEEccCCCCccceecCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK----------------LVMWDFSKGRPNKIVNFGL 64 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~----------------v~iwd~~~~~~~~~~~~~~ 64 (250)
+|++||+.+++.+.... .+ ..+..++|+|||+ .|+.++.++. |++|++.+++....+....
T Consensus 152 ~i~v~d~~tg~~~~~~~-~~-~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~ 228 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVL-ER-VKFSCMAWTHDGK-GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF 228 (710)
T ss_dssp EEEEEETTTTEEEEEEE-EE-ECSCCEEECTTSS-EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC
T ss_pred EEEEEECCCCCCCcccc-cC-cccceEEEEeCCC-EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc
Confidence 47899999998876433 22 2377899999999 6777776655 9999998776432222110
Q ss_pred CCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC-----CCeEEEEeCCC------ce-eEeeccCCCCCCccce
Q 025649 65 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-----DGVVDVINIES------EL-NISRSKSTTKPLKGSQ 132 (250)
Q Consensus 65 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~------~~-~~~~~~~~~~~~~~~~ 132 (250)
+ .++..+..+.|+| ++++|+.++. +..|.+||+.+ +. ....+.... .... .
T Consensus 229 ~---------~~~~~~~~~~~Sp------Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-~~~~-~ 291 (710)
T 2xdw_A 229 P---------DEPKWMGGAELSD------DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF-EGEY-D 291 (710)
T ss_dssp T---------TCTTCEEEEEECT------TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-SSCE-E
T ss_pred C---------CCCeEEEEEEEcC------CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCC-CcEE-E
Confidence 0 0234577899998 9999888764 67899999976 42 222222222 2222 3
Q ss_pred eecccceeEEEeeeeee-----c--cCeeee--eeccccCccc--cEEEEEeecCCCCCcEEEEeeCCCe--EEEEecCC
Q 025649 133 STSKVNIRDAEMEILDQ-----S--GGKRLH--LDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKL--VKVWDCSR 199 (250)
Q Consensus 133 ~~~~~~~~~~~~~~~~~-----~--~~~~~~--~~~~~~~h~~--~v~~~~~~p~~~~~~~l~s~~~d~~--i~iwd~~~ 199 (250)
.++|+|..++.....+. . ...... ....+..|.. .+..++|+ +++.++++...|+. |.+||+.+
T Consensus 292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~lv~~~~~~g~~~l~~~~~~~ 368 (710)
T 2xdw_A 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV---RSNFLVLCYLHDVKNTLQLHDLAT 368 (710)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE---TTTEEEEEEEETTEEEEEEEETTT
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE---cCCEEEEEEEECCEEEEEEEECCC
Confidence 58888887764322111 0 011110 1123333433 67888998 78888888888885 56667756
Q ss_pred CcceecccccceeeeeeccCCceeEEEecCCCCCeEE-Eee---CCceEEEEeC
Q 025649 200 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV-VCD---TSKVVKVYSI 249 (250)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~---~d~~i~vw~~ 249 (250)
+ ..+..+..+...+..+.++| ++..++ +.+ ..+.|++||+
T Consensus 369 g---------~~~~~l~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 369 G---------ALLKIFPLEVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp C---------CEEEEECCCSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEEET
T ss_pred C---------CEEEecCCCCceEEEEecCC-CCCEEEEEEeCCCCCCEEEEEEC
Confidence 5 33334445667788888887 665544 322 3578999986
No 187
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.56 E-value=1.3e-12 Score=99.79 Aligned_cols=216 Identities=10% Similarity=-0.037 Sum_probs=125.5
Q ss_pred cEEEEcccceeeeeeccCC------CCCeeeEEEcCCCCeEEEEec-C-CCeEEEEEccCCCCccc-eecCCC-----CC
Q 025649 2 WQIIDIRQHCLYKSLRAGH------SSICSSVQFIPWKPWEVISGG-L-DSKLVMWDFSKGRPNKI-VNFGLP-----EN 67 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h------~~~v~~l~~~~~~~~~l~s~s-~-dg~v~iwd~~~~~~~~~-~~~~~~-----~~ 67 (250)
|.+||+.+++.+.++. .. ......++++|+|+ +|+++. . +++|.+||+.+++.+.. +..+.. ..
T Consensus 83 v~v~d~~t~~~~~~i~-~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p 160 (361)
T 2oiz_A 83 VEVWDADKLTFEKEIS-LPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQP 160 (361)
T ss_dssp EEEEETTTCCEEEEEE-ECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECT
T ss_pred EEEEECcCCcEEEEEE-cCccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcC
Confidence 7899999999888876 32 34577999999999 566654 3 68999999999887766 543210 00
Q ss_pred CC-CC-CcccCCCceeEEecCC----------CcccC-----------CCCCEEEEEeCCCeEEEEeCCCceeE--eecc
Q 025649 68 NG-NA-GQCYNPAFVHAIAIPD----------ADMLD-----------KTNKICVVAKGDGVVDVINIESELNI--SRSK 122 (250)
Q Consensus 68 ~~-~~-~~~~~~~~v~~~~~~~----------~~~~~-----------~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~ 122 (250)
.. .. ........+..+.+.. ...++ +++..++..+.++.+.++|+..+... ....
T Consensus 161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~ 240 (361)
T 2oiz_A 161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS 240 (361)
T ss_dssp TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence 00 00 0000001111111110 00000 11234444556677777777543221 1110
Q ss_pred CC---------CCCCccceeecccceeEEEeee--------------eeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649 123 ST---------TKPLKGSQSTSKVNIRDAEMEI--------------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 179 (250)
Q Consensus 123 ~~---------~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 179 (250)
.. .......++++|+++.++.... ....+....+.+.++..+. +.+++|+ |+
T Consensus 241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~s---pd 315 (361)
T 2oiz_A 241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTID---QQ 315 (361)
T ss_dssp SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEE---TT
T ss_pred ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEEC---CC
Confidence 00 0012223788999877764322 1112334455666777666 8999999 89
Q ss_pred CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC
Q 025649 180 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 233 (250)
Q Consensus 180 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 233 (250)
|++|++++. +.|.+||..++.. +.+.....+......++++| +|.
T Consensus 316 g~~l~v~n~-~~v~v~D~~t~~l-------~~~~~i~~~G~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 316 RNLMLTLDG-GNVNVYDISQPEP-------KLLRTIEGAAEASLQVQFHP-VGG 360 (361)
T ss_dssp TTEEEEECS-SCEEEEECSSSSC-------EEEEEETTSCSSEEEEEECC-CSC
T ss_pred CCEEEEeCC-CeEEEEECCCCcc-------eeeEEeccCCCCcEEEEecC-CCC
Confidence 999998887 9999999999611 22333346777788899987 664
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=2.3e-12 Score=97.07 Aligned_cols=210 Identities=8% Similarity=-0.102 Sum_probs=136.0
Q ss_pred CcEEEEcccceeeeeecc---C--CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649 1 MWQIIDIRQHCLYKSLRA---G--HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~---~--h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
+|.++|.++++....+.. + .......+.+.. +. ++++...++.|.+||..+++.+..+..
T Consensus 18 ~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~-lyv~~~~~~~v~viD~~t~~~~~~i~~------------- 82 (328)
T 3dsm_A 18 TLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GI-GWIVVNNSHVIFAIDINTFKEVGRITG------------- 82 (328)
T ss_dssp EEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TE-EEEEEGGGTEEEEEETTTCCEEEEEEC-------------
T ss_pred eEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CE-EEEEEcCCCEEEEEECcccEEEEEcCC-------------
Confidence 478999999988766520 1 223467787753 33 677777789999999999998887752
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC----CCccceeecccceeEEEee----ee
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----PLKGSQSTSKVNIRDAEME----IL 147 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~ 147 (250)
......+++++ +++..++...++.|.+||+.+++....+..... .....+++ .++..+++.. ..
T Consensus 83 -~~~p~~i~~~~------~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v 154 (328)
T 3dsm_A 83 -FTSPRYIHFLS------DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRI 154 (328)
T ss_dssp -CSSEEEEEEEE------TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEE
T ss_pred -CCCCcEEEEeC------CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEE
Confidence 24578888877 775444444899999999999887765544321 14556677 4444444211 01
Q ss_pred eeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC----------CeEEEEecCCCcceecccccceeeeeec
Q 025649 148 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND----------KLVKVWDCSRFQGVQTSINNDLLIKNIN 217 (250)
Q Consensus 148 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 217 (250)
...+....+.+..+... .....++++ ++|++++++..+ +.|.++|..++ ++.....-
T Consensus 155 ~viD~~t~~~~~~i~~g-~~p~~i~~~---~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------~v~~~~~~ 221 (328)
T 3dsm_A 155 LKIDTETDKVVDELTIG-IQPTSLVMD---KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---------TVEKQFKF 221 (328)
T ss_dssp EEEETTTTEEEEEEECS-SCBCCCEEC---TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---------EEEEEEEC
T ss_pred EEEECCCCeEEEEEEcC-CCccceEEc---CCCCEEEEECCCccCCccccCCceEEEEECCCC---------eEEEEEec
Confidence 11111222223333322 234678888 889988877655 79999999987 33323221
Q ss_pred -cCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 218 -LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 218 -~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
....+..++++| +++.|+++.. .|.+||.
T Consensus 222 ~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~ 251 (328)
T 3dsm_A 222 KLGDWPSEVQLNG-TRDTLYWINN--DIWRMPV 251 (328)
T ss_dssp CTTCCCEEEEECT-TSCEEEEESS--SEEEEET
T ss_pred CCCCCceeEEEec-CCCEEEEEcc--EEEEEEC
Confidence 234688999998 7777777654 7888886
No 189
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=2.5e-11 Score=92.89 Aligned_cols=217 Identities=9% Similarity=-0.041 Sum_probs=132.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec----------CCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG----------LDSKLVMWDFSKGRPNKIVNFGLPENNGN 70 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 70 (250)
+|.++|..+++.+.++. ....+ .++++||++ .++.+. .++.|.+||..+.+.+..+..+.+..
T Consensus 48 ~v~v~D~~t~~~~~~i~-~g~~p--~i~~spDg~-~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~--- 120 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVN-GGFLP--NPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR--- 120 (373)
T ss_pred EEEEEECCCCeEEEEec-CCCCC--CeEECCCCC-EEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc---
Confidence 47899999999998888 44444 999999999 555553 36789999999888877776431000
Q ss_pred CCcccCCCceeEEecCCCcccCCCCCEEEEEeC--CCeEEEEeCCCceeEee-ccCCCC------CCccceeecccceeE
Q 025649 71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG--DGVVDVINIESELNISR-SKSTTK------PLKGSQSTSKVNIRD 141 (250)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~ 141 (250)
. .....-..++++| ++++|+++.. ++.|.++| .+++.... +..... ..-.-+.++++|+.+
T Consensus 121 ~---~~g~~p~~~~~sp------DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~ 190 (373)
T 2mad_H 121 F---DVGPYSWMNANTP------NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLA 190 (373)
T ss_pred c---ccCCCccceEECC------CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEE
Confidence 0 0001235788998 9999998874 57899999 98887766 543211 000112333444333
Q ss_pred EEeeeeeeccC--------------------------------------------eeeeeeccccC----------cccc
Q 025649 142 AEMEILDQSGG--------------------------------------------KRLHLDYSVGG----------HTAA 167 (250)
Q Consensus 142 ~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~----------h~~~ 167 (250)
.. .. ..... ...+.+..+.- ....
T Consensus 191 ~v-d~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g 268 (373)
T 2mad_H 191 KT-DH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGG 268 (373)
T ss_pred EE-EC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCc
Confidence 21 00 00000 00000001100 0111
Q ss_pred EEEEEeecCCCCCcEEEEeeC----------CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC-eEE
Q 025649 168 ASCVAFSMFGERGKYLISGGN----------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLV 236 (250)
Q Consensus 168 v~~~~~~p~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~ 236 (250)
...++++ ++++.+..+.. .+.|.++|..+. +.+..+ ........++|+| ||+ .++
T Consensus 269 ~~~~~~s---~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---------~vv~~i-~~g~~p~~i~~s~-Dg~~~l~ 334 (373)
T 2mad_H 269 WQQVAYL---KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------QTSSQI-SLGHDVDAISVAQ-DGGPDLY 334 (373)
T ss_pred eEeEEEC---CCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------EEEEEE-ECCCCcCeEEECC-CCCeEEE
Confidence 2336677 77776666542 357999999987 443333 3344688999998 888 777
Q ss_pred Eee-CCceEEEEeCC
Q 025649 237 VCD-TSKVVKVYSIS 250 (250)
Q Consensus 237 s~~-~d~~i~vw~~~ 250 (250)
++. .++.|.+||+.
T Consensus 335 v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 335 ALSAGTEVLHIYDAG 349 (373)
T ss_pred EEcCCCCeEEEEECC
Confidence 777 58999999963
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=2.8e-12 Score=106.18 Aligned_cols=197 Identities=7% Similarity=-0.166 Sum_probs=124.2
Q ss_pred CCCCCeeeEEEcCCCCeEEE-----EecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 19 GHSSICSSVQFIPWKPWEVI-----SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~-----s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
+|...+..++|||||+ +|+ .|+.+.+|++||+.+++.+..-... ......++|+|
T Consensus 118 ~~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-------------~~~~~~~~wsp------ 177 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE-------------GGKYATPKWTP------ 177 (695)
T ss_dssp SSCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS-------------CCTTCCCEECT------
T ss_pred CCCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcCCcccC-------------cccccceEEec------
Confidence 4555789999999999 677 4555679999999998764111111 11126789998
Q ss_pred CCCEEEEEeCCCe-------------EEEEeCCCceeE--eeccC-CCCCCccceeecccceeEEEeeeee-----ecc-
Q 025649 94 TNKICVVAKGDGV-------------VDVINIESELNI--SRSKS-TTKPLKGSQSTSKVNIRDAEMEILD-----QSG- 151 (250)
Q Consensus 94 ~~~~l~~~~~d~~-------------i~~~d~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~- 151 (250)
+++.|+.++.|.. |++|++.++... ..... .....+..+.++|||++++...... .+.
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWK 257 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEE
Confidence 9999999988776 999999986521 22222 2224677899999999988432211 111
Q ss_pred -CeeeeeeccccCccccEEEEEeecCCCCCcEEEEee---CCCeEEEEecCCCcceecccccceeeeeecc--CCceeEE
Q 025649 152 -GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINL--NKKVNWL 225 (250)
Q Consensus 152 -~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~ 225 (250)
.... ....+..+...+....+. +|.+++.+. .++.|.+||+.++... ....+..+ ...+..+
T Consensus 258 ~~~~~-~~~~l~~~~~~~~~~~~~----~g~l~~~s~~~~~~~~l~~~d~~~~~~~-------~~~~l~~~~~~~~l~~~ 325 (695)
T 2bkl_A 258 RPGEK-DFRLLVKGVGAKYEVHAW----KDRFYVLTDEGAPRQRVFEVDPAKPARA-------SWKEIVPEDSSASLLSV 325 (695)
T ss_dssp CTTCS-SCEEEEECSSCCEEEEEE----TTEEEEEECTTCTTCEEEEEBTTBCSGG-------GCEEEECCCSSCEEEEE
T ss_pred cCCCC-ceEEeecCCCceEEEEec----CCcEEEEECCCCCCCEEEEEeCCCCCcc-------CCeEEecCCCCCeEEEE
Confidence 1011 122333344445555554 445555544 2579999999876321 11223333 3457778
Q ss_pred EecCCCCCeEEEeeCCceEEEEeC
Q 025649 226 CTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 226 ~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+++ ++.++++...|+..+||.+
T Consensus 326 ~~~--~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 326 SIV--GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp EEE--TTEEEEEEEETTEEEEEEE
T ss_pred EEE--CCEEEEEEEECCEEEEEEE
Confidence 886 5678888899999888854
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.51 E-value=2.1e-12 Score=107.17 Aligned_cols=198 Identities=6% Similarity=-0.139 Sum_probs=124.1
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCC-C----eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLD-S----KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~d-g----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
+|...+..++|||||+ +|+.++.+ | +|++||+.+++.+.... . ...+.+++|+|
T Consensus 122 ~~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~-------------~~~~~~~~wsp------ 180 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPDVL-E-------------RVKFSCMAWTH------ 180 (710)
T ss_dssp TSCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEEEE-E-------------EECSCCEEECT------
T ss_pred CCCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCcccc-c-------------CcccceEEEEe------
Confidence 3445688999999999 67655443 2 89999999887654322 1 12256799998
Q ss_pred CCCEEEEEeCCCe----------------EEEEeCCCceeE--eeccCC-CCCCccceeecccceeEEEeeeee------
Q 025649 94 TNKICVVAKGDGV----------------VDVINIESELNI--SRSKST-TKPLKGSQSTSKVNIRDAEMEILD------ 148 (250)
Q Consensus 94 ~~~~l~~~~~d~~----------------i~~~d~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------ 148 (250)
|++.|+.++.++. |++|++.+++.. ...... .......+.++|||++++......
T Consensus 181 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 181 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR 260 (710)
T ss_dssp TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence 9999999887765 999999886532 111221 224467899999999988432211
Q ss_pred ecc--Cee------ee-eeccccCccccEEEEEeecCCCCCcEEEEeeCC----CeEEEEecCCCcceecccccceeeee
Q 025649 149 QSG--GKR------LH-LDYSVGGHTAAASCVAFSMFGERGKYLISGGND----KLVKVWDCSRFQGVQTSINNDLLIKN 215 (250)
Q Consensus 149 ~~~--~~~------~~-~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~ 215 (250)
... ... .. ....+..+...+.. .|+ ++|..|+..+.+ +.|.+||+.++.. .....+
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-------~~~~~l 329 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVT---NEGTVFTFKTNRHSPNYRLINIDFTDPEE-------SKWKVL 329 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEE---EETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEE
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEE-EEe---ccCCEEEEEECCCCCCCEEEEEeCCCCCc-------ccceec
Confidence 110 111 10 22334444444444 467 677766655442 3699999987631 112334
Q ss_pred eccCC--ceeEEEecCCCCCeEEEeeCCceE--EEEeC
Q 025649 216 INLNK--KVNWLCTTPTESENLVVCDTSKVV--KVYSI 249 (250)
Q Consensus 216 ~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i--~vw~~ 249 (250)
..|.. .+..+.|++ ++.++++...|+.. .+|++
T Consensus 330 ~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 330 VPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp ECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEET
T ss_pred cCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEEC
Confidence 44443 577788885 67778888888855 44554
No 192
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.51 E-value=2.4e-12 Score=97.61 Aligned_cols=198 Identities=7% Similarity=-0.074 Sum_probs=122.1
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC---------------------------CCeEEEEEccCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---------------------------DSKLVMWDFSKG 54 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~---------------------------dg~v~iwd~~~~ 54 (250)
|.+||+.+++...... . .. +..++|+|+|+ .|+.++. ...|.+||+.++
T Consensus 87 l~~~~~~~g~~~~l~~-~-~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 87 IWVADLETLSSKKILE-A-KN-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEEETTTTEEEEEEE-E-SE-EEEEEECTTSS-EEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred EEEEECCCCceEEEEc-C-CC-ccceeECCCCC-EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 6678888887765554 3 33 99999999999 5666653 257899999877
Q ss_pred CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC-------eEEEEeCCCceeEeeccCCCCC
Q 025649 55 RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-------VVDVINIESELNISRSKSTTKP 127 (250)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~-------~i~~~d~~~~~~~~~~~~~~~~ 127 (250)
+.+..+. .+ .+..+.|+| ++ +++++..++ ...+|.+.+++...... . .
T Consensus 163 ~~~~~l~--------------~~-~~~~~~~sp------dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~-~--~ 217 (347)
T 2gop_A 163 EVIEEFE--------------KP-RFSSGIWHR------DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFE-K--V 217 (347)
T ss_dssp EEEEEEE--------------EE-TTCEEEEET------TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEE-E--E
T ss_pred eEEeeec--------------CC-CcccccCCC------Ce-EEEEEecccccccccccccEEEeCCCceEEecc-C--c
Confidence 6534443 12 467788998 88 777775542 33444333444322221 1 2
Q ss_pred CccceeecccceeEEEeeeee---------eccCeeeeeeccccCccccEEE-EEeecCCCCCcEEEEeeCCCeEEEEec
Q 025649 128 LKGSQSTSKVNIRDAEMEILD---------QSGGKRLHLDYSVGGHTAAASC-VAFSMFGERGKYLISGGNDKLVKVWDC 197 (250)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~h~~~v~~-~~~~p~~~~~~~l~s~~~d~~i~iwd~ 197 (250)
.+. .++|+|+.++...... .......+.......+...+.. +.|+ ++ ++++++.++.++|| +
T Consensus 218 ~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~s----dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 218 SFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKD----GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp SEE--EEEECSSCEEEEECCSSSCCCSSCEEEEECSSCEEESSTTCCSEEEEEEEET----TE-EEEEEEETTEEEEE-E
T ss_pred cee--eECCCCCEEEEEEccccCCccccceEEEECCCceEeccccCCcccCCccEEc----Cc-EEEEEecCCcEEEE-E
Confidence 223 3399999887433211 1110111222233455667775 7775 56 88899999999999 8
Q ss_pred CCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE-EEEeC
Q 025649 198 SRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV-KVYSI 249 (250)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i-~vw~~ 249 (250)
.++ +. .....+...|..++|+| .++++++.++.. .||.+
T Consensus 290 ~~g---------~~-~~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 290 WDG---------EI-KPIAKGRHWIMGFDVDE---IVVYLKETATRLRELFTW 329 (347)
T ss_dssp ESS---------SE-EEEECSSSEEEEEEESS---SEEEEEECSSSCCEEEEE
T ss_pred cCC---------ce-EEEecCCCeEEeeeeeC---cEEEEEcCCCChHHheEe
Confidence 743 22 23344567889999986 577777766654 67754
No 193
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=7e-11 Score=88.20 Aligned_cols=213 Identities=12% Similarity=0.052 Sum_probs=133.3
Q ss_pred cEEEEcccceeeeeecc----CCCCCeeeEEEcCC-CCeEEEEecCCCeEEEEEccCCCCccc-eecCCCCCCCCCCccc
Q 025649 2 WQIIDIRQHCLYKSLRA----GHSSICSSVQFIPW-KPWEVISGGLDSKLVMWDFSKGRPNKI-VNFGLPENNGNAGQCY 75 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~----~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~ 75 (250)
|.+||..+++.. .+.. ++...+.+++++++ +. ++++.. .+.|.+||.. ++.... .... . ..
T Consensus 48 i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~-~~~l~~~d~~-g~~~~~~~~~~----~-----~~ 114 (314)
T 1pjx_A 48 ILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQ-LFVADM-RLGLLVVQTD-GTFEEIAKKDS----E-----GR 114 (314)
T ss_dssp EEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSE-EEEEET-TTEEEEEETT-SCEEECCSBCT----T-----SC
T ss_pred EEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCc-EEEEEC-CCCEEEEeCC-CCEEEEEeccC----C-----Cc
Confidence 677887777653 3320 25567899999999 75 555544 4478899987 654322 1100 0 00
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCC---------------CeEEEEeCCCceeEeeccCCCCCCccceeec----c
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGD---------------GVVDVINIESELNISRSKSTTKPLKGSQSTS----K 136 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~ 136 (250)
....+.++++.+ +++++++...+ +.|..||.. ++....... ......++++ |
T Consensus 115 ~~~~~~~i~~d~------~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~~~~i~~~~~~d~ 185 (314)
T 1pjx_A 115 RMQGCNDCAFDY------EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQFPNGIAVRHMNDG 185 (314)
T ss_dssp BCBCCCEEEECT------TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ESSEEEEEEEECTTS
T ss_pred cccCCcCEEECC------CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CCCcceEEEecccCC
Confidence 123578899988 88888777655 578888876 443322211 1345678889 9
Q ss_pred cceeEEEee-------eeeec-cCe--eeeeeccccCcc-ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec
Q 025649 137 VNIRDAEME-------ILDQS-GGK--RLHLDYSVGGHT-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205 (250)
Q Consensus 137 ~~~~~~~~~-------~~~~~-~~~--~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 205 (250)
+++.+.... .++.. ... ..+....+.++. ..+..++++ ++|+++++...++.|.+||..++
T Consensus 186 dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d---~~G~l~v~~~~~~~i~~~d~~~g----- 257 (314)
T 1pjx_A 186 RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD---EDNNLLVANWGSSHIEVFGPDGG----- 257 (314)
T ss_dssp CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB---TTCCEEEEEETTTEEEEECTTCB-----
T ss_pred CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC---CCCCEEEEEcCCCEEEEEcCCCC-----
Confidence 987554221 12211 111 111233344444 567889999 89998888878899999999865
Q ss_pred ccccceeeeeeccCCceeEEEecCCCCCeE-EEeeCCceEEEEeC
Q 025649 206 SINNDLLIKNINLNKKVNWLCTTPTESENL-VVCDTSKVVKVYSI 249 (250)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~vw~~ 249 (250)
+.+.....+...+.++++.+ +++.| ++...++.|..|++
T Consensus 258 ----~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 258 ----QPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp ----SCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEEC
T ss_pred ----cEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeC
Confidence 33334444557789999976 78744 45556688988885
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.50 E-value=1.4e-11 Score=98.97 Aligned_cols=185 Identities=12% Similarity=0.077 Sum_probs=130.2
Q ss_pred CCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEE
Q 025649 31 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI 110 (250)
Q Consensus 31 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~ 110 (250)
|.+. ++++...+++|.++|..+++.+..+..+ ..++.+.++| +++++++++.|+.|.+|
T Consensus 165 ~~~~-~~V~~~~~~~V~viD~~t~~v~~~i~~g--------------~~p~~v~~Sp------DGr~lyv~~~dg~V~vi 223 (567)
T 1qks_A 165 LENL-FSVTLRDAGQIALIDGSTYEIKTVLDTG--------------YAVHISRLSA------SGRYLFVIGRDGKVNMI 223 (567)
T ss_dssp GGGE-EEEEETTTTEEEEEETTTCCEEEEEECS--------------SCEEEEEECT------TSCEEEEEETTSEEEEE
T ss_pred CCce-EEEEeCCCCeEEEEECCCCeEEEEEeCC--------------CCccceEECC------CCCEEEEEcCCCeEEEE
Confidence 4444 7888899999999999999998888755 4578999999 99999999999999999
Q ss_pred eCC--CceeEeeccCCCCCCccceeec----ccceeEEEeeeeeec----cCeeeeeeccccC----------ccc-cEE
Q 025649 111 NIE--SELNISRSKSTTKPLKGSQSTS----KVNIRDAEMEILDQS----GGKRLHLDYSVGG----------HTA-AAS 169 (250)
Q Consensus 111 d~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----------h~~-~v~ 169 (250)
|+. +++....+... .....++++ |||++++....+... +....+.+..+.. |.. .+.
T Consensus 224 D~~~~t~~~v~~i~~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva 301 (567)
T 1qks_A 224 DLWMKEPTTVAEIKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 301 (567)
T ss_dssp ETTSSSCCEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred ECCCCCCcEeEEEecC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence 996 66666655543 456789999 699998854333221 2222333333221 222 577
Q ss_pred EEEeecCCCCC-cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee-CCceEEEE
Q 025649 170 CVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVY 247 (250)
Q Consensus 170 ~~~~~p~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw 247 (250)
.+..+ +++ .++++...+|.|.++|...... +.............+.|+| +++++++++ .++.|.++
T Consensus 302 ~i~~s---~~~~~~vv~~~~~g~v~~vd~~~~~~--------~~v~~i~~~~~~~d~~~~p-dgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 302 AILAS---HYRPEFIVNVKETGKILLVDYTDLNN--------LKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVI 369 (567)
T ss_dssp EEEEC---SSSSEEEEEETTTTEEEEEETTCSSE--------EEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEE
T ss_pred EEEEc---CCCCEEEEEecCCCeEEEEecCCCcc--------ceeeeeeccccccCceECC-CCCEEEEEeCCCCeEEEE
Confidence 88888 554 4556666789999999987532 1122233445566788997 888876654 67889999
Q ss_pred eCC
Q 025649 248 SIS 250 (250)
Q Consensus 248 ~~~ 250 (250)
|+.
T Consensus 370 D~~ 372 (567)
T 1qks_A 370 DTK 372 (567)
T ss_dssp ETT
T ss_pred ECC
Confidence 863
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.47 E-value=4.1e-10 Score=83.31 Aligned_cols=208 Identities=6% Similarity=-0.090 Sum_probs=135.3
Q ss_pred cEEEEcccceeeee-eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 2 WQIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 2 i~iwd~~~~~~~~~-l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
|.+||.. ++.... +. .+...+.++++++++. ++++...++.|..||.. ++ ...+... .....+
T Consensus 38 v~~~d~~-~~~~~~~~~-~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~-~~~~~~~-----------~~~~~~ 101 (299)
T 2z2n_A 38 ISCINLD-GKITEYPLP-TPDAKVMCLTISSDGE-VWFTENAANKIGRITKK-GI-IKEYTLP-----------NPDSAP 101 (299)
T ss_dssp EEEECTT-CCEEEEECS-STTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC-EEEEECS-----------STTCCE
T ss_pred EEEEcCC-CCeEEecCC-cccCceeeEEECCCCC-EEEeCCCCCeEEEECCC-Cc-EEEEeCC-----------CcCCCc
Confidence 5677766 443322 22 3456789999999998 77777778899999975 33 2233211 013467
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeeeccCee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQSGGKR 154 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 154 (250)
.++++.| +++++++...++.|..||. +++............+..++++++|..+++. ..++. .. .
T Consensus 102 ~~i~~~~------~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-~ 172 (299)
T 2z2n_A 102 YGITEGP------NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SG-D 172 (299)
T ss_dssp EEEEECT------TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-C
T ss_pred eeeEECC------CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC-c
Confidence 8899988 8888888777899999999 5444332222233567889999998777632 11222 11 1
Q ss_pred eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceee-eeeccCCceeEEEecCCCCC
Q 025649 155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI-KNINLNKKVNWLCTTPTESE 233 (250)
Q Consensus 155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~ 233 (250)
... ..+..+...+.+++++ ++|+++++...++.|.+||. ++. ... ....+...+..+++.+ +|+
T Consensus 173 ~~~-~~~~~~~~~~~~i~~~---~~g~l~v~~~~~~~i~~~~~-~g~---------~~~~~~~~~~~~~~~i~~~~-~g~ 237 (299)
T 2z2n_A 173 ITE-FKIPTPASGPVGITKG---NDDALWFVEIIGNKIGRITT-SGE---------ITEFKIPTPNARPHAITAGA-GID 237 (299)
T ss_dssp EEE-EECSSTTCCEEEEEEC---TTSSEEEEETTTTEEEEECT-TCC---------EEEEECSSTTCCEEEEEECS-TTC
T ss_pred EEE-eeCCCCCCcceeEEEC---CCCCEEEEccCCceEEEECC-CCc---------EEEEECCCCCCCceeEEECC-CCC
Confidence 111 1123344568899999 88888887777889999998 542 111 1223446788999987 777
Q ss_pred eEEEeeCCceEEEEeC
Q 025649 234 NLVVCDTSKVVKVYSI 249 (250)
Q Consensus 234 ~l~s~~~d~~i~vw~~ 249 (250)
++++...++.|..||.
T Consensus 238 l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 238 LWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEEETTTTEEEEEET
T ss_pred EEEeccCCceEEEECC
Confidence 6666556788888874
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.47 E-value=2.5e-11 Score=88.67 Aligned_cols=192 Identities=8% Similarity=-0.030 Sum_probs=121.7
Q ss_pred CeeeEEEcCCCCeEEE-EecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 23 ICSSVQFIPWKPWEVI-SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
...++++++++. +++ +.+.++.|.+||..+.... .+... ....+.++++.+ +++++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~-~~~~~------------~~~~p~~i~~~~------~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTT-VLPFN------------GLYQPQGLAVDG------AGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----E-ECCCC------------SCCSCCCEEECT------TCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccc-eEeeC------------CcCCcceeEECC------CCCEEEEc
Confidence 678999999998 777 6578899999997654422 11111 124567888887 88866665
Q ss_pred eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeeeccccCccccEEEEEeecCCC
Q 025649 102 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE 178 (250)
Q Consensus 102 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 178 (250)
. ++.|.+||........ ...........++++++|+.+++.. ......................+.+++++ +
T Consensus 85 ~-~~~i~~~d~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~---~ 159 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV-LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD---N 159 (270)
T ss_dssp T-TTEEEEECTTCSCCEE-CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC---T
T ss_pred C-CCEEEEEeCCCceEee-eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe---C
Confidence 5 8899999988754432 2222224678899999998666321 11111111111111112223456789999 8
Q ss_pred CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 179 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 179 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+|+++++...++.|.+||..... .......+...+..+++.+ +|.++++...++.|.+|+.
T Consensus 160 ~g~l~v~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 160 SGNVYVTDTDNNRVVKLEAESNN---------QVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTTCC---------EEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECT
T ss_pred CCCEEEEECCCCEEEEEecCCCc---------eEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcC
Confidence 88888887778999999988752 2112222335678899987 7777777767888999975
No 197
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.47 E-value=8.7e-12 Score=103.23 Aligned_cols=212 Identities=10% Similarity=-0.073 Sum_probs=125.7
Q ss_pred CcEEEEcccceeeeeeccCCCCC--eeeEEEcCCCCeEEEEecCCCe-------------EEEEEccCCCCccceecCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSI--CSSVQFIPWKPWEVISGGLDSK-------------LVMWDFSKGRPNKIVNFGLP 65 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~--v~~l~~~~~~~~~l~s~s~dg~-------------v~iwd~~~~~~~~~~~~~~~ 65 (250)
+|++||+.+++.+. . .+... ...++|+|||+ .|+.++.|.. |++|++.+++....+....+
T Consensus 148 ~i~v~dl~tg~~~~--~-~~~~~~~~~~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~ 223 (695)
T 2bkl_A 148 VLHVIDVDSGEWSK--V-DVIEGGKYATPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT 223 (695)
T ss_dssp EEEEEETTTCCBCS--S-CCBSCCTTCCCEECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC
T ss_pred EEEEEECCCCCCcC--C-cccCcccccceEEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC
Confidence 48999999988751 1 12222 26899999999 7888877765 99999988764322221100
Q ss_pred CCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC----eEEEEeCCCceeEeeccCCCCCCccceeecccceeE
Q 025649 66 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG----VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 141 (250)
Q Consensus 66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (250)
.++..+.++.++| +|++|+.++.++ .|.++|..++....... .. .......+ ++|. +
T Consensus 224 ---------~~~~~~~~~~~Sp------DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~-~~~~~~~~-~~g~-l 284 (695)
T 2bkl_A 224 ---------GDPTTFLQSDLSR------DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK-GV-GAKYEVHA-WKDR-F 284 (695)
T ss_dssp ---------CCTTCEEEEEECT------TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE-CS-SCCEEEEE-ETTE-E
T ss_pred ---------CCCEEEEEEEECC------CCCEEEEEEeCCCCceEEEEEcCCCCceEEeec-CC-CceEEEEe-cCCc-E
Confidence 0235678999999 999988887665 77777765554332222 21 22333344 5666 4
Q ss_pred EEeeeeee-------ccCeeeee--eccccCc--cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC-Ccceeccccc
Q 025649 142 AEMEILDQ-------SGGKRLHL--DYSVGGH--TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR-FQGVQTSINN 209 (250)
Q Consensus 142 ~~~~~~~~-------~~~~~~~~--~~~~~~h--~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~ 209 (250)
+.....+. ........ ...+..+ ...+..++++ ++.++++...|+..+||.+.. +
T Consensus 285 ~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~----~~~lv~~~~~dg~~~l~~~~~~g--------- 351 (695)
T 2bkl_A 285 YVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV----GGHLSLEYLKDATSEVRVATLKG--------- 351 (695)
T ss_dssp EEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE----TTEEEEEEEETTEEEEEEEETTC---------
T ss_pred EEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE----CCEEEEEEEECCEEEEEEEeCCC---------
Confidence 42222110 01111110 1122222 4457788887 567889999999888886652 3
Q ss_pred ceeeeeecc-CCceeEEEecCCCCCeEE-E---eeCCceEEEEeC
Q 025649 210 DLLIKNINL-NKKVNWLCTTPTESENLV-V---CDTSKVVKVYSI 249 (250)
Q Consensus 210 ~~~~~~~~~-~~~v~~~~~~~~~~~~l~-s---~~~d~~i~vw~~ 249 (250)
.....+..+ ...+..+.++| +++.++ + ....+.|++||+
T Consensus 352 ~~~~~l~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 352 KPVRTVQLPGVGAASNLMGLE-DLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp CEEEECCCSSSSEECCCBSCT-TCSEEEEEEEETTEEEEEEEEET
T ss_pred CeeEEecCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEEC
Confidence 222233333 55677788887 666555 2 234578999986
No 198
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.45 E-value=2.7e-10 Score=88.31 Aligned_cols=211 Identities=12% Similarity=0.039 Sum_probs=132.8
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
|++||+++++...... .. .... ++|+|++. .|+++..++ .|.+++...+.....+.... ......
T Consensus 154 I~~id~~~g~~~~~~~-~~-~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~---------~~~~~~ 220 (409)
T 3hrp_A 154 VRLISVDDNKVTTVHP-GF-KGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGWAPTRIGQLG---------STFSGK 220 (409)
T ss_dssp EEEEETTTTEEEEEEE-TC-CBCB-CEECTTSS-EEEEEBSSTTCEEEEEEGGGTTCEEEEEECC---------TTSCSC
T ss_pred EEEEECCCCEEEEeec-cC-CCCc-eeEecCCC-cEEEEecCCCceEEEEEcCCCceeEEeeecc---------chhcCC
Confidence 7889988877765555 32 2333 99999998 677777655 78889887665433331000 001245
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEee----ccCCCCCCcc-ceeeccc-ceeEEEe------eee
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR----SKSTTKPLKG-SQSTSKV-NIRDAEM------EIL 147 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~~~~-~~~~~~~-~~~~~~~------~~~ 147 (250)
.++++++| ++..|+++..++.|+.||..++..... .......... .++++|+ +.++++. ..+
T Consensus 221 p~~iav~p------~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~ 294 (409)
T 3hrp_A 221 IGAVALDE------TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKI 294 (409)
T ss_dssp CCBCEECT------TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cEEEEEeC------CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEE
Confidence 67888887 666666677889999999987654332 1111111112 8999995 5555431 111
Q ss_pred eeccCeeeeeeccccCc---------------cccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCcceecccccce
Q 025649 148 DQSGGKRLHLDYSVGGH---------------TAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDL 211 (250)
Q Consensus 148 ~~~~~~~~~~~~~~~~h---------------~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~ 211 (250)
+.. .. . ..+.++ -.....++++ ++|+++++-+ .+++|+.||+.++..
T Consensus 295 ~~~-g~-~---~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d---~dG~lyvad~~~~~~I~~~~~~~G~v--------- 357 (409)
T 3hrp_A 295 TPD-GE-C---EWFCGSATQKTVQDGLREEALFAQPNGMTVD---EDGNFYIVDGFKGYCLRKLDILDGYV--------- 357 (409)
T ss_dssp CTT-CC-E---EEEEECTTCCSCBCEEGGGCBCSSEEEEEEC---TTCCEEEEETTTTCEEEEEETTTTEE---------
T ss_pred ecC-CC-E---EEEEeCCCCCCcCCCcccccEeCCCeEEEEe---CCCCEEEEeCCCCCEEEEEECCCCEE---------
Confidence 111 11 1 111111 2347899999 8999888888 899999999877632
Q ss_pred eeeeecc---------------CCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 212 LIKNINL---------------NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 212 ~~~~~~~---------------~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
....++ -..+..+++.+ ++.++++-..++.|+.++++
T Consensus 358 -~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 358 -STVAGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp -EEEEECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEEC
T ss_pred -EEEeCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEeC
Confidence 122222 24588899997 68777777788899988764
No 199
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.45 E-value=2.7e-12 Score=97.83 Aligned_cols=143 Identities=9% Similarity=-0.037 Sum_probs=99.5
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
.+.. |+.|+| ++. .|+++ .++.|++||+++......... +...+.++.+.+ . .+
T Consensus 86 ~lp~-V~~l~f--d~~-~L~v~-~~~~l~v~dv~sl~~~~~~~~-------------~~~~v~~i~~~~------p--~~ 139 (388)
T 1xip_A 86 EIPD-VIFVCF--HGD-QVLVS-TRNALYSLDLEELSEFRTVTS-------------FEKPVFQLKNVN------N--TL 139 (388)
T ss_dssp ECTT-EEEEEE--ETT-EEEEE-ESSEEEEEESSSTTCEEEEEE-------------CSSCEEEEEECS------S--EE
T ss_pred eCCC-eeEEEE--CCC-EEEEE-cCCcEEEEEchhhhccCccce-------------eecceeeEEecC------C--CE
Confidence 3566 999999 777 78888 889999999987654433321 234566666654 2 28
Q ss_pred EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCC
Q 025649 99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE 178 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 178 (250)
+++..||.|.+||+.++... .+...|+|++|+ |
T Consensus 140 av~~~dG~L~v~dl~~~~~~--------------------------------------------~~~~~Vs~v~WS---p 172 (388)
T 1xip_A 140 VILNSVNDLSALDLRTKSTK--------------------------------------------QLAQNVTSFDVT---N 172 (388)
T ss_dssp EEEETTSEEEEEETTTCCEE--------------------------------------------EEEESEEEEEEC---S
T ss_pred EEEECCCCEEEEEccCCccc--------------------------------------------cccCCceEEEEc---C
Confidence 88899999999999864411 033579999999 8
Q ss_pred CCcEEEEeeCCCeEEEEecCCCcc--eecccccceeeeeeccCCceeEEEecCCCCCeEEE
Q 025649 179 RGKYLISGGNDKLVKVWDCSRFQG--VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV 237 (250)
Q Consensus 179 ~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 237 (250)
+| ++.|..||++++|+...... ..+...+..+....+|...|.++.|.+ +++++++
T Consensus 173 kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~ 230 (388)
T 1xip_A 173 SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAV 230 (388)
T ss_dssp SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEE
T ss_pred Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEE
Confidence 88 67888999999998887642 111111111111124778899999997 7777776
No 200
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.43 E-value=1.6e-11 Score=94.80 Aligned_cols=220 Identities=9% Similarity=0.000 Sum_probs=135.7
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec---------CCCeEEEEEccCCCCccceecCCCCCCCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG---------LDSKLVMWDFSKGRPNKIVNFGLPENNGNA 71 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 71 (250)
+|.++|+.+++.+.++. .-..+ .++++|+++.++++.. .++.|.++|..+++.+..+..+.+.. .
T Consensus 100 ~VsVID~~t~~vv~~I~-vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r---~ 173 (426)
T 3c75_H 100 QQFVIDGSTGRILGMTD-GGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR---F 173 (426)
T ss_dssp EEEEEETTTTEEEEEEE-ECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC---C
T ss_pred eEEEEECCCCEEEEEEE-CCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc---c
Confidence 47899999999999998 44455 8999999994444432 46789999999999888876430000 0
Q ss_pred CcccCCCceeEEecCCCcccCCCCCEEEEEeC--CCeEEEEeCCCceeEeeccCCCC------CCccceeecccceeEEE
Q 025649 72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKG--DGVVDVINIESELNISRSKSTTK------PLKGSQSTSKVNIRDAE 143 (250)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 143 (250)
........+.++| ++++++++.. ++.|.+.|+.+++....+..... .....+.++++|+.+..
T Consensus 174 ---~~g~~P~~~~~sp------DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V 244 (426)
T 3c75_H 174 ---LVGTYQWMNALTP------DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARV 244 (426)
T ss_dssp ---CBSCCGGGSEECT------TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEE
T ss_pred ---ccCCCcceEEEcC------CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEE
Confidence 0012346788898 9999998864 58899999999887766554311 01112445566655442
Q ss_pred eeeeeeccC-------------------------------------------eeeeeecccc-------C---ccccEEE
Q 025649 144 MEILDQSGG-------------------------------------------KRLHLDYSVG-------G---HTAAASC 170 (250)
Q Consensus 144 ~~~~~~~~~-------------------------------------------~~~~~~~~~~-------~---h~~~v~~ 170 (250)
........ .....+..+. . .......
T Consensus 245 -~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~ 323 (426)
T 3c75_H 245 -DFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQ 323 (426)
T ss_dssp -ECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSC
T ss_pred -ECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCcee
Confidence 11100000 0000000000 0 0001112
Q ss_pred EEeecCCCCCcEEEEeeC----------CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC-eEEEee
Q 025649 171 VAFSMFGERGKYLISGGN----------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCD 239 (250)
Q Consensus 171 ~~~~p~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~ 239 (250)
++++ ++++.++.... ++.|.+.|..+.+ .+..+. -......++++| |++ ++++..
T Consensus 324 va~s---~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k---------vv~~I~-vg~~P~gia~sp-Dg~~~lyv~n 389 (426)
T 3c75_H 324 TAYH---RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE---------RINKIE-LGHEIDSINVSQ-DAEPLLYALS 389 (426)
T ss_dssp EEEE---GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEE-EEEEECEEEECC-SSSCEEEEEE
T ss_pred eEEc---CCCCEEEEEecccccccccCCCCEEEEEECCCCe---------EEEEEE-CCCCcCeEEEcc-CCCEEEEEEc
Confidence 5777 77776655432 3579999999973 333332 223588899998 887 788877
Q ss_pred -CCceEEEEeCC
Q 025649 240 -TSKVVKVYSIS 250 (250)
Q Consensus 240 -~d~~i~vw~~~ 250 (250)
.++.|.++|+.
T Consensus 390 ~~s~~VsVID~~ 401 (426)
T 3c75_H 390 AGTQTLHIYDAA 401 (426)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEEECC
Confidence 59999999963
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.43 E-value=1.2e-09 Score=80.84 Aligned_cols=190 Identities=6% Similarity=-0.059 Sum_probs=123.0
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 99 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 99 (250)
....+.++++.+++. ++++...++.|..||. +++.. .+.... ....+.++++.+ ++++++
T Consensus 97 ~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~-~~~~~~-----------~~~~~~~i~~~~------~g~l~v 156 (299)
T 2z2n_A 97 PDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIR-EYELPN-----------KGSYPSFITLGS------DNALWF 156 (299)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEE-EEECSS-----------TTCCEEEEEECT------TSCEEE
T ss_pred cCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEE-EecCCC-----------CCCCCceEEEcC------CCCEEE
Confidence 456789999999998 7787777889999998 55432 222110 124578899988 888888
Q ss_pred EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeeeccCeeeeeeccccCccccEEEEEe
Q 025649 100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQSGGKRLHLDYSVGGHTAAASCVAF 173 (250)
Q Consensus 100 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 173 (250)
+...++.|..||. +++............+..++++++|..+++. ..++. ... ... .....+...+.++++
T Consensus 157 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-~~~-~~~~~~~~~~~~i~~ 232 (299)
T 2z2n_A 157 TENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE-ITE-FKIPTPNARPHAITA 232 (299)
T ss_dssp EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-EEE-EECSSTTCCEEEEEE
T ss_pred EeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc-EEE-EECCCCCCCceeEEE
Confidence 7777889999999 6554432122223457789999998866632 11222 111 111 123334567899999
Q ss_pred ecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee-eeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 174 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+ ++|+++++...++.|..||.. + ..... ...+...+.++++ + ++.+.++.+ .+.+..++.
T Consensus 233 ~---~~g~l~v~~~~~~~i~~~d~~-g---------~~~~~~~~~~~~~~~~i~~-~-~g~l~v~~~-~~~l~~~~~ 293 (299)
T 2z2n_A 233 G---AGIDLWFTEWGANKIGRLTSN-N---------IIEEYPIQIKSAEPHGICF-D-GETIWFAME-CDKIGKLTL 293 (299)
T ss_dssp C---STTCEEEEETTTTEEEEEETT-T---------EEEEEECSSSSCCEEEEEE-C-SSCEEEEET-TTEEEEEEE
T ss_pred C---CCCCEEEeccCCceEEEECCC-C---------ceEEEeCCCCCCccceEEe-c-CCCEEEEec-CCcEEEEEc
Confidence 9 888877777678999999983 3 21111 2234467888888 5 787666655 455655553
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.40 E-value=6.7e-12 Score=95.64 Aligned_cols=151 Identities=11% Similarity=0.015 Sum_probs=101.9
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 102 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 102 (250)
+++.+++++... ++++|+.+ .+++|++.+.+....-... ..+.......+. |+.++| . +++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~---~~~~~~~~~lp~-V~~l~f-d-------~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDST---PLTFKWEKEIPD-VIFVCF-H-------GDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSC---CCCCSEEEECTT-EEEEEE-E-------TTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccc---cccceEEeeCCC-eeEEEE-C-------CCEEEEE-
Confidence 689999999998 89999887 5556997644310000000 000001112455 888888 3 7888888
Q ss_pred CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcE
Q 025649 103 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 182 (250)
Q Consensus 103 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 182 (250)
.++.|++||+++..... ....|...+.++.+.+ | .
T Consensus 104 ~~~~l~v~dv~sl~~~~----------------------------------------~~~~~~~~v~~i~~~~--p---~ 138 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR----------------------------------------TVTSFEKPVFQLKNVN--N---T 138 (388)
T ss_dssp ESSEEEEEESSSTTCEE----------------------------------------EEEECSSCEEEEEECS--S---E
T ss_pred cCCcEEEEEchhhhccC----------------------------------------ccceeecceeeEEecC--C---C
Confidence 88999999998643111 1122344567777662 3 2
Q ss_pred EEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 183 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 183 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+++++.||.|.+||++.+. .. .+...|.+++|+| +| ++.|..||++++|+.
T Consensus 139 ~av~~~dG~L~v~dl~~~~---------~~----~~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~ 189 (388)
T 1xip_A 139 LVILNSVNDLSALDLRTKS---------TK----QLAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAW 189 (388)
T ss_dssp EEEEETTSEEEEEETTTCC---------EE----EEEESEEEEEECS-SE--EEEEETTSCEEEEEE
T ss_pred EEEEECCCCEEEEEccCCc---------cc----cccCCceEEEEcC-Cc--eEEEEcCCcEEEEcC
Confidence 8888999999999999863 21 1446899999998 66 678999999999964
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.40 E-value=3.1e-10 Score=84.27 Aligned_cols=200 Identities=10% Similarity=-0.018 Sum_probs=122.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|..||..+++. ..+. ....+.+++++++++ ++++. ++.|.+||..+++........ . . .....+.
T Consensus 37 i~~~d~~~~~~-~~~~--~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~~~~~~~~~-~---~-----~~~~~~~ 101 (297)
T 3g4e_A 37 VCRWDSFTKQV-QRVT--MDAPVSSVALRQSGG-YVATI--GTKFCALNWKEQSAVVLATVD-N---D-----KKNNRFN 101 (297)
T ss_dssp EEEEETTTCCE-EEEE--CSSCEEEEEEBTTSS-EEEEE--TTEEEEEETTTTEEEEEEECC-T---T-----CSSEEEE
T ss_pred EEEEECCCCcE-EEEe--CCCceEEEEECCCCC-EEEEE--CCeEEEEECCCCcEEEEEecC-C---C-----CCCCCCC
Confidence 56677766654 3343 456799999999998 55554 568999999877643222211 0 0 0123467
Q ss_pred EEecCCCcccCCCCCEEEEEeC-----------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-----
Q 025649 82 AIAIPDADMLDKTNKICVVAKG-----------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME----- 145 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 145 (250)
.+++.| +|+++++... .+.|..+|.. ++....... ......++|+|+++.+....
T Consensus 102 di~~d~------dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~--~~~pngi~~spdg~~lyv~~~~~~~ 172 (297)
T 3g4e_A 102 DGKVDP------AGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQ--VDISNGLDWSLDHKIFYYIDSLSYS 172 (297)
T ss_dssp EEEECT------TSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEE--ESBEEEEEECTTSCEEEEEEGGGTE
T ss_pred CEEECC------CCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeec--cccccceEEcCCCCEEEEecCCCCc
Confidence 889998 8887765532 2344455543 222221111 13456899999998765322
Q ss_pred --eeee--ccC--eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC
Q 025649 146 --ILDQ--SGG--KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 219 (250)
Q Consensus 146 --~~~~--~~~--~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 219 (250)
.++. ... ...+....+..+...+..+++. ++|++.++....+.|..||..++ +++.....+.
T Consensus 173 i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d---~~G~lwva~~~~~~v~~~d~~tG---------~~~~~i~~p~ 240 (297)
T 3g4e_A 173 VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID---AEGKLWVACYNGGRVIRLDPVTG---------KRLQTVKLPV 240 (297)
T ss_dssp EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB---TTSCEEEEEETTTEEEEECTTTC---------CEEEEEECSS
T ss_pred EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC---CCCCEEEEEcCCCEEEEEcCCCc---------eEEEEEECCC
Confidence 1221 111 1112233444445667899999 89998888888889999999977 5555555566
Q ss_pred CceeEEEecCCCCCeEEE
Q 025649 220 KKVNWLCTTPTESENLVV 237 (250)
Q Consensus 220 ~~v~~~~~~~~~~~~l~s 237 (250)
..+++++|..++++.|+.
T Consensus 241 ~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 241 DKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp SBEEEEEEESGGGCEEEE
T ss_pred CCceEEEEeCCCCCEEEE
Confidence 779999998336555543
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.40 E-value=6.7e-10 Score=82.42 Aligned_cols=200 Identities=11% Similarity=-0.007 Sum_probs=126.3
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
.+..--.+..|+|++..++++...++.|..||..+++. ..+. .+..+.++++.| +++++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~--------------~~~~~~~i~~~~------dG~l~ 68 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT--------------MDAPVSSVALRQ------SGGYV 68 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE--------------CSSCEEEEEEBT------TSSEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe--------------CCCceEEEEECC------CCCEE
Confidence 44456678999997665788888899999999987654 3343 235688999998 88855
Q ss_pred EEEeCCCeEEEEeCCCceeEeeccCC---CCCCccceeecccceeEEEeeeeeec------cCeeee------eeccccC
Q 025649 99 VVAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNIRDAEMEILDQS------GGKRLH------LDYSVGG 163 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~------~~~~~~~ 163 (250)
++ . ++.|.+||..+++........ ....+..++++|+|+++++....... ...... ....+..
T Consensus 69 v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 146 (297)
T 3g4e_A 69 AT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD 146 (297)
T ss_dssp EE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE
T ss_pred EE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee
Confidence 54 3 568999999887654332221 12346789999999977643211100 000000 0011112
Q ss_pred ccccEEEEEeecCCCCCcEE-EEeeCCCeEEEEecC--CCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC
Q 025649 164 HTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCS--RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT 240 (250)
Q Consensus 164 h~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 240 (250)
+......++|+ |+++.| ++.+.++.|.+||+. ++.... .+.+..+..+...+..+++.+ +|.+.++...
T Consensus 147 ~~~~pngi~~s---pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~----~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~ 218 (297)
T 3g4e_A 147 QVDISNGLDWS---LDHKIFYYIDSLSYSVDAFDYDLQTGQISN----RRSVYKLEKEEQIPDGMCIDA-EGKLWVACYN 218 (297)
T ss_dssp EESBEEEEEEC---TTSCEEEEEEGGGTEEEEEEECTTTCCEEE----EEEEEECCGGGCEEEEEEEBT-TSCEEEEEET
T ss_pred ccccccceEEc---CCCCEEEEecCCCCcEEEEeccCCCCcccC----cEEEEECCCCCCCCCeeEECC-CCCEEEEEcC
Confidence 23346789999 888765 555668899999974 442110 022222333445678899987 7877777777
Q ss_pred CceEEEEeC
Q 025649 241 SKVVKVYSI 249 (250)
Q Consensus 241 d~~i~vw~~ 249 (250)
++.|..||.
T Consensus 219 ~~~v~~~d~ 227 (297)
T 3g4e_A 219 GGRVIRLDP 227 (297)
T ss_dssp TTEEEEECT
T ss_pred CCEEEEEcC
Confidence 788999875
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.39 E-value=2.6e-09 Score=78.95 Aligned_cols=208 Identities=7% Similarity=-0.075 Sum_probs=133.7
Q ss_pred cEEEEcccceeee-eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 2 WQIIDIRQHCLYK-SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 2 i~iwd~~~~~~~~-~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
|.+||.. ++... .+. .+...+.++++.+++. ++++...++.|..+|.. ++. ..+.... ....+
T Consensus 43 v~~~~~~-~~~~~~~~~-~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~~-~~~~~~~-----------~~~~~ 106 (300)
T 2qc5_A 43 ISSLDQS-GRIKEFEVP-TPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GGF-TEYPLPQ-----------PDSGP 106 (300)
T ss_dssp EEEECTT-SCEEEEECS-STTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCE-EEEECSS-----------TTCCE
T ss_pred EEEECCC-CceEEEECC-CCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CCe-EEecCCC-----------CCCCC
Confidence 5567765 44432 222 3446789999999998 77777778899999987 543 2332110 12457
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee------eeeeccCee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGKR 154 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 154 (250)
.++++.+ +++++++...++.|..+|.. ++............+..++++++|+..++.. .++. .. .
T Consensus 107 ~~i~~~~------~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g-~ 177 (300)
T 2qc5_A 107 YGITEGL------NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TG-K 177 (300)
T ss_dssp EEEEECS------TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-C
T ss_pred ccceECC------CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CC-c
Confidence 8888887 88888887778899999988 5544222222235678899999998665321 1111 11 1
Q ss_pred eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee-eeccCCceeEEEecCCCCC
Q 025649 155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVNWLCTTPTESE 233 (250)
Q Consensus 155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~ 233 (250)
... .....+...+.++++. ++|++.++....+.|.+||. ++ ..... ...+...+..+++.+ +++
T Consensus 178 ~~~-~~~~~~~~~~~~i~~d---~~g~l~v~~~~~~~i~~~~~-~g---------~~~~~~~~~~~~~~~~i~~d~-~g~ 242 (300)
T 2qc5_A 178 LEE-YPLPTNAAAPVGITSG---NDGALWFVEIMGNKIGRITT-TG---------EISEYDIPTPNARPHAITAGK-NSE 242 (300)
T ss_dssp EEE-EECSSTTCCEEEEEEC---TTSSEEEEETTTTEEEEECT-TC---------CEEEEECSSTTCCEEEEEECS-TTC
T ss_pred EEE-eeCCCCCCCcceEEEC---CCCCEEEEccCCCEEEEEcC-CC---------cEEEEECCCCCCCceEEEECC-CCC
Confidence 111 1223344568899999 88888887777789999998 33 22111 223445688899887 677
Q ss_pred eEEEeeCCceEEEEeC
Q 025649 234 NLVVCDTSKVVKVYSI 249 (250)
Q Consensus 234 ~l~s~~~d~~i~vw~~ 249 (250)
+.++...++.|..|+.
T Consensus 243 l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 243 IWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEEETTTTEEEEECT
T ss_pred EEEeccCCCeEEEECC
Confidence 6666656788888874
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.37 E-value=1.4e-10 Score=96.74 Aligned_cols=213 Identities=10% Similarity=0.023 Sum_probs=125.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCe--------------EEEEEccCCCCccceecCCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK--------------LVMWDFSKGRPNKIVNFGLPE 66 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--------------v~iwd~~~~~~~~~~~~~~~~ 66 (250)
+|++||+++++.+... .+...+..++|+|| + .|+.++.++. |++|++.++.....+....+
T Consensus 190 ~i~v~dl~tg~~~~~~--~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~- 264 (741)
T 1yr2_A 190 TVKFVGVADGKPLADE--LKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATP- 264 (741)
T ss_dssp EEEEEETTTCCEEEEE--EEEEESCCCEESTT-S-EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCT-
T ss_pred EEEEEECCCCCCCCcc--CCCceeccEEEECC-C-EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccC-
Confidence 3889999999876432 23333468999999 8 6666665543 88999877653222221200
Q ss_pred CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC-----eEEEEeCCCc--eeEeeccCCCCCCccceeecccce
Q 025649 67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-----VVDVINIESE--LNISRSKSTTKPLKGSQSTSKVNI 139 (250)
Q Consensus 67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 139 (250)
.++..+.++.|+| +|++|+..+.++ .|.+||+.++ .....+.... ...... ++|+|+
T Consensus 265 --------~~~~~~~~~~~Sp------DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~-~~~dg~ 328 (741)
T 1yr2_A 265 --------ELPKRGHGASVSS------DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL-KAQWDF-VDGVGD 328 (741)
T ss_dssp --------TCTTCEEEEEECT------TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS-SSCEEE-EEEETT
T ss_pred --------CCCeEEEEEEECC------CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC-CceEEE-EeccCC
Confidence 0223578899998 999888877543 8999999876 3022222222 222222 347887
Q ss_pred eEEEeee----------eeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC-CCcceecccc
Q 025649 140 RDAEMEI----------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS-RFQGVQTSIN 208 (250)
Q Consensus 140 ~~~~~~~----------~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~ 208 (250)
.++.... ++..... ......+..+...+..+.++ ++.++++...|+..+||.+. .+
T Consensus 329 ~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~----~~~lv~~~~~dg~~~l~~~~~~g-------- 395 (741)
T 1yr2_A 329 QLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA----GNRLFASYIHDAKSQVLAFDLDG-------- 395 (741)
T ss_dssp EEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE----BTEEEEEEEETTEEEEEEEETTS--------
T ss_pred EEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE----CCEEEEEEEECCEEEEEEEeCCC--------
Confidence 7763221 1111110 11122233444556677776 46788888889988777654 23
Q ss_pred cceeeeeec-cCCceeEEEecCCCCCeEE-Ee---eCCceEEEEeC
Q 025649 209 NDLLIKNIN-LNKKVNWLCTTPTESENLV-VC---DTSKVVKVYSI 249 (250)
Q Consensus 209 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~-s~---~~d~~i~vw~~ 249 (250)
.....+.. +...+..+.++| +++.++ +. ...+.|++||+
T Consensus 396 -~~~~~l~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 396 -KPAGAVSLPGIGSASGLSGRP-GDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp -CEEEECBCSSSCEEEEEECCB-TCSCEEEEEEETTEEEEEEEEET
T ss_pred -CceeeccCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEEC
Confidence 22222322 356688888887 665554 32 24578999986
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.33 E-value=8.2e-09 Score=76.28 Aligned_cols=208 Identities=4% Similarity=-0.086 Sum_probs=128.8
Q ss_pred cEEEEcccceeeeeec-cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 2 WQIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
|..+|.. ++.. .+. ......+.++++.+++. ++++...++.|..+|.. ++.. .+.... ....+
T Consensus 85 v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~-~~~~~~-----------~~~~~ 148 (300)
T 2qc5_A 85 IGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIY-EYDLPN-----------KGSYP 148 (300)
T ss_dssp EEEECTT-SCEE-EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEE-EEECSS-----------TTCCE
T ss_pred EEEECCC-CCeE-EecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEE-EccCCC-----------CCCCc
Confidence 4566665 4442 222 03446789999999998 77777778899999986 5433 222110 12457
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccC-eeee
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGG-KRLH 156 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~ 156 (250)
.++++.+ ++++.++...++.|..+|. +++............+..+.++++|...++.. ....... ....
T Consensus 149 ~~i~~d~------~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~ 221 (300)
T 2qc5_A 149 AFITLGS------DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEIS 221 (300)
T ss_dssp EEEEECT------TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEE
T ss_pred eeEEECC------CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEE
Confidence 8888887 8887777767889999998 44443322222235677899999987666421 1111111 1111
Q ss_pred eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee-eeccCCceeEEEecCCCCCeE
Q 025649 157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l 235 (250)
...+..+...+.+++++ ++|+++++...++.|..||.. + ..... .......+.++++.+ +|.+.
T Consensus 222 -~~~~~~~~~~~~~i~~d---~~g~l~v~~~~~~~i~~~~~~-g---------~~~~~~~~~~~~~~~~i~~~~-~g~l~ 286 (300)
T 2qc5_A 222 -EYDIPTPNARPHAITAG---KNSEIWFTEWGANQIGRITND-N---------TIQEYQLQTENAEPHGITFGK-DGSVW 286 (300)
T ss_dssp -EEECSSTTCCEEEEEEC---STTCEEEEETTTTEEEEECTT-S---------CEEEEECCSTTCCCCCEEECT-TSCEE
T ss_pred -EEECCCCCCCceEEEEC---CCCCEEEeccCCCeEEEECCC-C---------cEEEEECCccCCccceeEeCC-CCCEE
Confidence 11223345668899999 888877777778999999984 3 22111 222345688888886 77755
Q ss_pred EEeeCCceEEEEeC
Q 025649 236 VVCDTSKVVKVYSI 249 (250)
Q Consensus 236 ~s~~~d~~i~vw~~ 249 (250)
++.. + .|..+|.
T Consensus 287 v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 287 FALK-C-KIGKLNL 298 (300)
T ss_dssp EECS-S-EEEEEEE
T ss_pred EEcc-C-ceEEeCC
Confidence 5544 5 6777664
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.32 E-value=1.5e-10 Score=96.50 Aligned_cols=195 Identities=7% Similarity=-0.150 Sum_probs=116.3
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCC-----CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLD-----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
+|...+..++|||||+ +|+.++.+ .+|++||+.+++.+.... . ...+..++|+|
T Consensus 160 ~~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~-------------~~~~~~~~wsp------ 218 (741)
T 1yr2_A 160 DGATALDAWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKPLADEL-K-------------WVKFSGLAWLG------ 218 (741)
T ss_dssp ---EEEEEEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCEEEEEE-E-------------EEESCCCEEST------
T ss_pred CCCEEEEeEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCCccC-C-------------CceeccEEEEC------
Confidence 3444788999999999 66665433 469999999887644311 1 11235788998
Q ss_pred CCCEEEEEeCCCe--------------EEEEeCCCcee--EeeccCC-CCCCccceeecccceeEEEeeeeee-------
Q 025649 94 TNKICVVAKGDGV--------------VDVINIESELN--ISRSKST-TKPLKGSQSTSKVNIRDAEMEILDQ------- 149 (250)
Q Consensus 94 ~~~~l~~~~~d~~--------------i~~~d~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------- 149 (250)
+ +.|+.++.++. |.+|++.++.. ....... ....+..+.++|||++++... .+.
T Consensus 219 D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~~~~l 296 (741)
T 1yr2_A 219 N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITS-SEGTDPVNTV 296 (741)
T ss_dssp T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE-ECTTCSCCEE
T ss_pred C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEE-EccCCCcceE
Confidence 8 88888776554 89999987652 1122221 123477899999999888432 221
Q ss_pred cc--Ceee--eeeccccCccccEEEEEeecCCCCCcEEEEeeC----CCeEEEEecCCCcceecccccceeeeeeccCCc
Q 025649 150 SG--GKRL--HLDYSVGGHTAAASCVAFSMFGERGKYLISGGN----DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 221 (250)
Q Consensus 150 ~~--~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (250)
.. .... +....+..+...+... ++ |+|+.|+..+. ++.|.+||+.++. . ........+...
T Consensus 297 ~~~d~~~~~~~~~~~l~~~~~~~~~~-~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~------~~~~l~~~~~~~ 365 (741)
T 1yr2_A 297 HVARVTNGKIGPVTALIPDLKAQWDF-VD---GVGDQLWFVSGDGAPLKKIVRVDLSGST-P------RFDTVVPESKDN 365 (741)
T ss_dssp EEEEEETTEECCCEEEECSSSSCEEE-EE---EETTEEEEEECTTCTTCEEEEEECSSSS-C------EEEEEECCCSSE
T ss_pred EEEECCCCCCcccEEecCCCCceEEE-Ee---ccCCEEEEEECCCCCCCEEEEEeCCCCc-c------ccEEEecCCCCe
Confidence 11 0100 1023333344444443 34 57777776654 3469999988742 0 122222334445
Q ss_pred eeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 222 VNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 222 v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+..+.+. ++.++++...|+..+||.+
T Consensus 366 l~~~~~~--~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 366 LESVGIA--GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp EEEEEEE--BTEEEEEEEETTEEEEEEE
T ss_pred EEEEEEE--CCEEEEEEEECCEEEEEEE
Confidence 6667776 5667888888998887753
No 209
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.32 E-value=2.6e-10 Score=86.61 Aligned_cols=98 Identities=6% Similarity=-0.189 Sum_probs=72.2
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec----------CCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG----------LDSKLVMWDFSKGRPNKIVNFGLPENNGN 70 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 70 (250)
+|.++|..+++.+.++. ....+ .+.++|+++ .++.+. .++.|.+||+.+++.+.++..+...
T Consensus 47 ~vsvID~~t~~v~~~i~-vG~~P--~i~~spDg~-~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~---- 118 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSL-GAFLS--LAVAGHSGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP---- 118 (368)
T ss_dssp EEEEEETTTTEEEEEEE-ECTTC--EEEECTTSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC----
T ss_pred eEEEEECCCCeEEEEEe-CCCCC--ceEECCCCC-EEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc----
Confidence 36689999999999998 44455 799999998 455553 4789999999999999988754100
Q ss_pred CCcccCCCceeEEecCCCcccCCCCCEEEEEeC--CCeEEE--EeCCC
Q 025649 71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG--DGVVDV--INIES 114 (250)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~--~d~~~ 114 (250)
... .-...+.++++| ++++++++.. +..+.+ +|+.+
T Consensus 119 ~~~--~g~~P~~ia~Sp------DGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 119 RFS--VGPRVHIIGNCA------SSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp SCC--BSCCTTSEEECT------TSSCEEEEECSSSCEEEEEETTTEE
T ss_pred ccc--cCCCcceEEEcC------CCCEEEEEccCCCCeEEEEEEchhh
Confidence 000 002346788998 9999998864 467888 99876
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.32 E-value=1.4e-09 Score=81.03 Aligned_cols=203 Identities=10% Similarity=-0.061 Sum_probs=120.8
Q ss_pred CCCCCeeeEEEcCCCCeEEEE-------ecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649 19 GHSSICSSVQFIPWKPWEVIS-------GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML 91 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s-------~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (250)
..-....+++|++++. ++++ +..++.|.+||..+++.. .+... . ...+...+.++++.+
T Consensus 15 ~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~--~------~~~~~~~~~~i~~~~---- 80 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKP--E------VNGYGGIPAGCQCDR---- 80 (314)
T ss_dssp CCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEE-EEECC--E------ETTEECCEEEEEECS----
T ss_pred ccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEec--c------cCCCCCCCceEEEec----
Confidence 3444668999999998 7777 677899999998777643 22210 0 000124578899987
Q ss_pred CCC-CCEEEEEeCCCeEEEEeCCCceeEee-ccCC---CCCCccceeecccceeEEEeeee----------------ee-
Q 025649 92 DKT-NKICVVAKGDGVVDVINIESELNISR-SKST---TKPLKGSQSTSKVNIRDAEMEIL----------------DQ- 149 (250)
Q Consensus 92 ~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~----------------~~- 149 (250)
+ ++++++.. .+.|.+||.. ++.... .... ....+..++++++|+++++.... ..
T Consensus 81 --~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 81 --DANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp --SSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred --CCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEE
Confidence 7 66555544 4478999998 665433 2211 12347889999999877743211 00
Q ss_pred -ccCeeeeeeccccCccccEEEEEee----cCCCCCcEE-EEeeCCCeEEEEecC-CCcceecccccceeeeeeccC-Cc
Q 025649 150 -SGGKRLHLDYSVGGHTAAASCVAFS----MFGERGKYL-ISGGNDKLVKVWDCS-RFQGVQTSINNDLLIKNINLN-KK 221 (250)
Q Consensus 150 -~~~~~~~~~~~~~~h~~~v~~~~~~----p~~~~~~~l-~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~-~~ 221 (250)
.... .+. ..+..+......++++ | +++.+ ++...++.|.+||.. .+.... .........+. ..
T Consensus 157 ~~~~~-g~~-~~~~~~~~~~~~i~~~~~~d~---dg~~l~v~~~~~~~i~~~~~~~~g~~~~----~~~~~~~~~~~~~~ 227 (314)
T 1pjx_A 157 CFTTD-GQM-IQVDTAFQFPNGIAVRHMNDG---RPYQLIVAETPTKKLWSYDIKGPAKIEN----KKVWGHIPGTHEGG 227 (314)
T ss_dssp EECTT-SCE-EEEEEEESSEEEEEEEECTTS---CEEEEEEEETTTTEEEEEEEEETTEEEE----EEEEEECCCCSSCE
T ss_pred EECCC-CCE-EEeccCCCCcceEEEecccCC---CCCEEEEEECCCCeEEEEECCCCCcccc----ceEEEECCCCCCCC
Confidence 0111 111 1111222345677776 4 56544 555568899999986 331100 01222233333 56
Q ss_pred eeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 222 VNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 222 v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
+..+++.+ +|.++++...++.|.+||.
T Consensus 228 p~~i~~d~-~G~l~v~~~~~~~i~~~d~ 254 (314)
T 1pjx_A 228 ADGMDFDE-DNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEEEBT-TCCEEEEEETTTEEEEECT
T ss_pred CCceEECC-CCCEEEEEcCCCEEEEEcC
Confidence 78899987 8887777777889999985
No 211
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.29 E-value=5.2e-10 Score=85.08 Aligned_cols=178 Identities=8% Similarity=-0.074 Sum_probs=111.7
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec----------CCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG----------LDSKLVMWDFSKGRPNKIVNFGLPENNGN 70 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 70 (250)
+|.+.|..+++.+.++. ....+ . ++++|+|+ .++.+. .++.|.+||..+++.+..+..+... .
T Consensus 60 ~V~ViD~~t~~v~~~I~-vG~~P-~-va~spDG~-~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~---r 132 (386)
T 3sjl_D 60 QQFVIDGEAGRVIGMID-GGFLP-N-PVVADDGS-FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP---R 132 (386)
T ss_dssp EEEEEETTTTEEEEEEE-ECSSC-E-EEECTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC---C
T ss_pred EEEEEECCCCeEEEEEE-CCCCC-c-EEECCCCC-EEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc---c
Confidence 36789999999999998 44455 4 99999999 454443 3678999999999988888654100 0
Q ss_pred CCcccCCCceeEEecCCCcccCCCCCEEEEEeC--CCeEEEEeCCCceeEeeccCCCCC------CccceeecccceeEE
Q 025649 71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG--DGVVDVINIESELNISRSKSTTKP------LKGSQSTSKVNIRDA 142 (250)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 142 (250)
......-..++++| +|++++++.. ++.|.++|+.+++....+...... .-.-+..++||+++.
T Consensus 133 ---~~~g~~P~~~a~sp------DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~ 203 (386)
T 3sjl_D 133 ---FLVGTYPWMTSLTP------DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAK 203 (386)
T ss_dssp ---CCBSCCGGGEEECT------TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEE
T ss_pred ---cccCCCCceEEEcC------CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEE
Confidence 00012346789998 9999988864 689999999999888777543211 111136677777665
Q ss_pred Eeeeee-eccCeeeeeeccccCccccEE-EEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649 143 EMEILD-QSGGKRLHLDYSVGGHTAAAS-CVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 143 ~~~~~~-~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~ 200 (250)
+.... ........ ..+......+. ..+|.+ ++|++++ .+.+|.|.+.|+.+.
T Consensus 204 -v~~~~~g~v~~~~~--~~~~~~~~~~~~~~~~~~--~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 204 -VAFGTEGTPEITHT--EVFHPEDEFLINHPAYSQ--KAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp -EECCSSSCCEEEEC--CCCSCTTSCBCSCCEEET--TTTEEEE-EBTTSEEEEEECTTS
T ss_pred -EECCCCCeEEEeec--ceeccccccccccceeEc--CCCcEEE-EeCCCEEEEEECCCC
Confidence 22221 11111000 11111112221 235542 6776655 444799999999775
No 212
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.28 E-value=7.7e-09 Score=74.66 Aligned_cols=212 Identities=9% Similarity=-0.010 Sum_probs=128.2
Q ss_pred cceeeeeeccCCC--CCeeeEEEcCCCCeEEEEecC--CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEe
Q 025649 9 QHCLYKSLRAGHS--SICSSVQFIPWKPWEVISGGL--DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA 84 (250)
Q Consensus 9 ~~~~~~~l~~~h~--~~v~~l~~~~~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 84 (250)
+.+.+.++. |. .....+.|++++. ++++.+. ++.|++.|+.+++.+..+..+ .......++
T Consensus 8 ~~~vv~~~p--~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~------------~~~fgeGi~ 72 (266)
T 2iwa_A 8 IVEVLNEFP--HDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMD------------DSYFGEGLT 72 (266)
T ss_dssp EEEEEEEEE--CCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEECC------------TTCCEEEEE
T ss_pred CceEEEEEE--CCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecC------------CCcceEEEE
Confidence 456777887 44 3468999999875 5665543 689999999999998887754 112223444
Q ss_pred cCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee---eeeccCeeeeeeccc
Q 025649 85 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI---LDQSGGKRLHLDYSV 161 (250)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 161 (250)
+. .+++.++.-.++.+.++|..+.+.+..+... . -....+++||+.++.+.. ....+....+.+..+
T Consensus 73 ~~-------g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~--~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I 142 (266)
T 2iwa_A 73 LL-------NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-M--KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKH 142 (266)
T ss_dssp EE-------TTEEEEEETTCSEEEEEETTTTEEEEEEECC-S--SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEE
T ss_pred Ee-------CCEEEEEEecCCEEEEEECCCCcEEEEEECC-C--CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEE
Confidence 43 2344455557899999999998888776544 1 123556778777763221 001112222223333
Q ss_pred cCc-----cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee--ee--ccCCceeEEEecCCCC
Q 025649 162 GGH-----TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK--NI--NLNKKVNWLCTTPTES 232 (250)
Q Consensus 162 ~~h-----~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~--~~~~~v~~~~~~~~~~ 232 (250)
.-. -..++.+.|. +|...+....++.|.+.|..+++.........+... .. .-....+.+++.|...
T Consensus 143 ~Vg~~~~p~~~~nele~~----dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~ 218 (266)
T 2iwa_A 143 NVKYNGHRVIRLNELEYI----NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK 218 (266)
T ss_dssp ECEETTEECCCEEEEEEE----TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT
T ss_pred EECCCCcccccceeEEEE----CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC
Confidence 211 1135677776 566666666688999999999854422111000000 00 0113568999998445
Q ss_pred CeEEEeeCCceEEEEeC
Q 025649 233 ENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 233 ~~l~s~~~d~~i~vw~~ 249 (250)
++++++...+++.+-++
T Consensus 219 ~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 219 RIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EEEEEETTCSEEEEEEE
T ss_pred EEEEECCCCCeEEEEEE
Confidence 56777778888877664
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.27 E-value=1.4e-08 Score=76.29 Aligned_cols=199 Identities=10% Similarity=0.019 Sum_probs=118.4
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|..||.++++.. .+. ....+.+++++|++. ++++. .+ .|.+||..+++........ . ......+.
T Consensus 73 i~~~d~~~~~~~-~~~--~~~~v~~i~~~~dg~-l~v~~-~~-gl~~~d~~~g~~~~~~~~~-----~----~~~~~~~~ 137 (326)
T 2ghs_A 73 LHELHLASGRKT-VHA--LPFMGSALAKISDSK-QLIAS-DD-GLFLRDTATGVLTLHAELE-----S----DLPGNRSN 137 (326)
T ss_dssp EEEEETTTTEEE-EEE--CSSCEEEEEEEETTE-EEEEE-TT-EEEEEETTTCCEEEEECSS-----T----TCTTEEEE
T ss_pred EEEEECCCCcEE-EEE--CCCcceEEEEeCCCe-EEEEE-CC-CEEEEECCCCcEEEEeeCC-----C----CCCCCCCC
Confidence 567777766542 343 346799999999997 56554 33 4999999877643222111 0 00123578
Q ss_pred EEecCCCcccCCCCCEEEEEeC------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-------eee
Q 025649 82 AIAIPDADMLDKTNKICVVAKG------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-------ILD 148 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 148 (250)
.+.+.| +|+++++... .+.|..++ +++....... ......++|+|+++.+.... .++
T Consensus 138 ~i~~d~------~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d 207 (326)
T 2ghs_A 138 DGRMHP------SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--ISIPNSICFSPDGTTGYFVDTKVNRLMRVP 207 (326)
T ss_dssp EEEECT------TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--ESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred CEEECC------CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--CcccCCeEEcCCCCEEEEEECCCCEEEEEE
Confidence 899998 8887765542 25666666 4443322111 13456889999998664321 122
Q ss_pred ec--cC-e--eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649 149 QS--GG-K--RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 223 (250)
Q Consensus 149 ~~--~~-~--~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (250)
.. .. . ..+....+......+..+++. ++|++.++...++.|.+||.. + +.+..+..+...+.
T Consensus 208 ~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d---~~G~lwva~~~~~~v~~~d~~-g---------~~~~~i~~~~~~~~ 274 (326)
T 2ghs_A 208 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCD---AEGHIWNARWGEGAVDRYDTD-G---------NHIARYEVPGKQTT 274 (326)
T ss_dssp BCTTTCCBSSCCEEEEECTTSSSEEEEEEEC---TTSCEEEEEETTTEEEEECTT-C---------CEEEEEECSCSBEE
T ss_pred cccccCCcccCceEEEECCCCCCCCCeeEEC---CCCCEEEEEeCCCEEEEECCC-C---------CEEEEEECCCCCcE
Confidence 11 11 0 011122233334556788998 889888877777899999984 4 34444445556789
Q ss_pred EEEecCCCCCeEEEe
Q 025649 224 WLCTTPTESENLVVC 238 (250)
Q Consensus 224 ~~~~~~~~~~~l~s~ 238 (250)
+++|..++++.|+.+
T Consensus 275 ~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 275 CPAFIGPDASRLLVT 289 (326)
T ss_dssp EEEEESTTSCEEEEE
T ss_pred EEEEecCCCCEEEEE
Confidence 999982266555443
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=8.7e-10 Score=83.54 Aligned_cols=196 Identities=8% Similarity=-0.021 Sum_probs=120.3
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecC-----CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGL-----DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
+|-..+..++++++++ ++++-.. ++.|.+||+.+++.+..+..+... .........+++.|
T Consensus 64 ~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~-------~~~~~~~~~v~vd~------ 129 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI-------TLSNSFVNDLAVDL------ 129 (343)
T ss_dssp CCCSCEEEEEECSSSE-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT-------SCTTCCCCEEEEET------
T ss_pred cceeEeeEEEEcCCCc-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh-------cccccccceEEEec------
Confidence 3557899999999987 5655433 579999999988877776643100 01223457888886
Q ss_pred CC-CEEEEEe---CCCeEEEEeCCCceeEeeccCC----------------------------CCCCccceeecccceeE
Q 025649 94 TN-KICVVAK---GDGVVDVINIESELNISRSKST----------------------------TKPLKGSQSTSKVNIRD 141 (250)
Q Consensus 94 ~~-~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~ 141 (250)
++ ..+++.. .++.|.+||+.+++.......+ .......++++|+|+.+
T Consensus 130 ~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~l 209 (343)
T 2qe8_A 130 IHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWL 209 (343)
T ss_dssp TTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEE
T ss_pred CCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEE
Confidence 44 4445554 6789999999877654433210 00124678999999877
Q ss_pred EEeeeeeecc--C-----e-----eeeeecc--ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccc
Q 025649 142 AEMEILDQSG--G-----K-----RLHLDYS--VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI 207 (250)
Q Consensus 142 ~~~~~~~~~~--~-----~-----~~~~~~~--~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 207 (250)
.......... . . ..+.... ..++......++++ ++|+++++...++.|.+||..++
T Consensus 210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d---~~G~l~va~~~~~~V~~~d~~~G------- 279 (343)
T 2qe8_A 210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISID---KDHNIYVGDLAHSAIGVITSADR------- 279 (343)
T ss_dssp EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEEC---TTCCEEEEEGGGTEEEEEETTTT-------
T ss_pred EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEEC---CCCCEEEEccCCCeEEEEECCCC-------
Confidence 6322111000 0 0 0000011 11233345678899 89999999989999999998554
Q ss_pred ccceeeee-eccCCceeEEEecCCCCCeEEEeeCC
Q 025649 208 NNDLLIKN-INLNKKVNWLCTTPTESENLVVCDTS 241 (250)
Q Consensus 208 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d 241 (250)
+..... ..+...+..+++.+ +++++++.+..
T Consensus 280 --~~~~~~~~~~~~~p~~va~~~-~g~l~v~~~~~ 311 (343)
T 2qe8_A 280 --AYKLLVTDEKLSWTDSFNFGS-DGYLYFDCNQL 311 (343)
T ss_dssp --EEEEEEECGGGSCEEEEEECT-TSCEEEEECCG
T ss_pred --CEEEEEECCceecCCeeEECC-CCcEEEEeCcc
Confidence 221111 12245688999987 78777776643
No 215
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.26 E-value=2e-12 Score=99.00 Aligned_cols=167 Identities=12% Similarity=0.080 Sum_probs=89.4
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|+.||.++|+.+.+++ . +.+.+..+..++. ++++++.||.|+.||..+|+.+..+... .+..+
T Consensus 21 v~a~d~~tG~~~W~~~-~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~------------~~~~~- 83 (369)
T 2hz6_A 21 LHAVSKRTGSIKWTLK-E--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFT------------IPELV- 83 (369)
T ss_dssp EEEEETTTCCEEEEEE-C--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCC------------HHHHH-
T ss_pred EEEEECCCCCEEEEec-C--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeecc------------Ccccc-
Confidence 7889999999999998 5 5666666677777 7888899999999999999887766532 01111
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccc
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 161 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (250)
..+|.. ..+..+++++.|+.|+.||.++|+.......
T Consensus 84 --~~sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-------------------------------------- 120 (369)
T 2hz6_A 84 --QASPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-------------------------------------- 120 (369)
T ss_dssp --TTCSCC--------CCCCEEEEEEEEECCC------------------------------------------------
T ss_pred --ccCceE---ecCCEEEEEeCCCEEEEEECCCCcEEEEecC--------------------------------------
Confidence 112210 0345677888899999999998875433211
Q ss_pred cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC---CeEEEe
Q 025649 162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES---ENLVVC 238 (250)
Q Consensus 162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~s~ 238 (250)
+. ...++ |++..+++++.|+.|+.||.++++..- ....+. ....++.. +. ..++++
T Consensus 121 --~~----~~~~~---p~~~~v~~~~~dg~v~a~d~~tG~~~W---------~~~~~~--~~~~~~~~-~~~~~~~v~~~ 179 (369)
T 2hz6_A 121 --AF----ADSLS---PSTSLLYLGRTEYTITMYDTKTRELRW---------NATYFD--YAASLPED-DVDYKMSHFVS 179 (369)
T ss_dssp ---------------------EEEEEEEEEEECCCSSSSSCCC---------EEEEEE--ECCBCCCC-CTTCCCCEEEE
T ss_pred --CC----ccccc---ccCCEEEEEecCCEEEEEECCCCCEEE---------eEeccc--ccCccccC-CccccceEEEE
Confidence 11 12345 567788888899999999999985331 111110 11122221 11 357778
Q ss_pred eCCceEEEEeC
Q 025649 239 DTSKVVKVYSI 249 (250)
Q Consensus 239 ~~d~~i~vw~~ 249 (250)
+.||.|+.||.
T Consensus 180 ~~dg~v~a~d~ 190 (369)
T 2hz6_A 180 NGDGLVVTVDS 190 (369)
T ss_dssp ETSCEEEEECT
T ss_pred CCCCEEEEEEC
Confidence 88999999885
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.26 E-value=7.2e-09 Score=80.36 Aligned_cols=201 Identities=9% Similarity=-0.034 Sum_probs=120.9
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
.....|+|++++. ++++...++.|++||..+++........ .... ++++| +++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~~--------------~~~~-ia~~~------~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGF--------------KGGK-PAVTK------DKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEEETC--------------CBCB-CEECT------TSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEeeccC--------------CCCc-eeEec------CCCcEEEE
Confidence 3678999999998 8888888899999999876654443311 2234 88888 88888888
Q ss_pred eCCC--eEEEEeCCCceeEeec---cCCCCCCccceeecc-cceeEEEee-----eeeeccCeeeeeecc--ccCccccE
Q 025649 102 KGDG--VVDVINIESELNISRS---KSTTKPLKGSQSTSK-VNIRDAEME-----ILDQSGGKRLHLDYS--VGGHTAAA 168 (250)
Q Consensus 102 ~~d~--~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~h~~~v 168 (250)
..++ .|.+++...+...... .........+++++| ++.+++... .++.... ....+.. ..++...-
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~-~~~~~~~~~~~g~~~~~ 267 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ-EVTLIKQLELSGSLGTN 267 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC-CEEEEEECCCCSCCCCS
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC-CEEEEecccccCCCCCC
Confidence 8765 7999998765543222 121235678899999 555554211 1111111 1111100 11222222
Q ss_pred -E-EEEeecCCC-CCcEEEEeeCCCeEEEEecCCCcceecccc--cceee--eeeccCCceeEEEecCCCCCeEEEee-C
Q 025649 169 -S-CVAFSMFGE-RGKYLISGGNDKLVKVWDCSRFQGVQTSIN--NDLLI--KNINLNKKVNWLCTTPTESENLVVCD-T 240 (250)
Q Consensus 169 -~-~~~~~p~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~-~ 240 (250)
. .++|+ | ++.++++-..++.|+.|+............ ..... .....-.....+++.+ +|+++++-. .
T Consensus 268 P~~~ia~~---p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~ 343 (409)
T 3hrp_A 268 PGPYLIYY---FVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFK 343 (409)
T ss_dssp SCCEEEEE---TTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTT
T ss_pred ccccEEEe---CCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCC
Confidence 2 89999 7 577777777789999999765311000000 00000 0000123478899997 788777766 7
Q ss_pred CceEEEEeC
Q 025649 241 SKVVKVYSI 249 (250)
Q Consensus 241 d~~i~vw~~ 249 (250)
++.|+.|++
T Consensus 344 ~~~I~~~~~ 352 (409)
T 3hrp_A 344 GYCLRKLDI 352 (409)
T ss_dssp TCEEEEEET
T ss_pred CCEEEEEEC
Confidence 889999984
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.24 E-value=9.6e-09 Score=76.46 Aligned_cols=161 Identities=9% Similarity=0.016 Sum_probs=103.0
Q ss_pred eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649 12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML 91 (250)
Q Consensus 12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (250)
.+..+. .+........|+|+++.++++...++.|..|+. +++ ...+... ...+.++++.+
T Consensus 36 ~~~~l~-~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~-------------~~~~~gl~~d~---- 95 (305)
T 3dr2_A 36 RLLTLY-DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDA-------------TAFTNGNAVDA---- 95 (305)
T ss_dssp CCEEEE-CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEES-------------CSCEEEEEECT----
T ss_pred ceEEEe-cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCC-------------CCccceeeECC----
Confidence 344455 556677899999999867788888999999998 454 3333322 35678899998
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCceeEeecc---CCCCCCccceeecccceeEEEe---eeee-----------------
Q 025649 92 DKTNKICVVAKGDGVVDVINIESELNISRSK---STTKPLKGSQSTSKVNIRDAEM---EILD----------------- 148 (250)
Q Consensus 92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------- 148 (250)
+++++++...++.|.+||.. ++...... ......+..++++|+|+.+++. +...
T Consensus 96 --dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~ 172 (305)
T 3dr2_A 96 --QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVY 172 (305)
T ss_dssp --TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEE
T ss_pred --CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEE
Confidence 89877776677899999986 44322211 1112346789999999988742 1110
Q ss_pred eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC------CeEEEEecCCC
Q 025649 149 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND------KLVKVWDCSRF 200 (250)
Q Consensus 149 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d------~~i~iwd~~~~ 200 (250)
..+....+. ..+. .......++|+ |+++.|+.+... +.|.+||+...
T Consensus 173 ~~d~~~g~~-~~~~-~~~~p~gl~~s---pdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 173 RLPPDGSPL-QRMA-DLDHPNGLAFS---PDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp EECSSSCCC-EEEE-EESSEEEEEEC---TTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred EEcCCCCcE-EEEe-cCCCCcceEEc---CCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 001100110 1111 23345788999 899877766554 78999998753
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.24 E-value=9.3e-09 Score=77.32 Aligned_cols=195 Identities=9% Similarity=-0.033 Sum_probs=119.8
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 102 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 102 (250)
...+..|+|++..++++...++.|..||..+++. ..+. .+..+.++++.| +++++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~--------------~~~~v~~i~~~~------dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK-TVHA--------------LPFMGSALAKIS------DSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEE--------------CSSCEEEEEEEE------TTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEE--------------CCCcceEEEEeC------CCeEEEEE-
Confidence 4578899998665778888889999999987653 2333 235688899988 88877654
Q ss_pred CCCeEEEEeCCCceeEeeccCC---CCCCccceeecccceeEEEeeee-------eeccCeeeeeeccccCccccEEEEE
Q 025649 103 GDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNIRDAEMEIL-------DQSGGKRLHLDYSVGGHTAAASCVA 172 (250)
Q Consensus 103 ~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~h~~~v~~~~ 172 (250)
.+ .|.+||..+++........ ....+..+.++|+|++++..... ........+ +..+..+......++
T Consensus 108 ~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~i~ 185 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFADISIPNSIC 185 (326)
T ss_dssp TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEEESSEEEEE
T ss_pred CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-EEEeeCCCcccCCeE
Confidence 44 4999999887654332211 12357789999999876632110 000000011 111112223467889
Q ss_pred eecCCCCCcEEE-EeeCCCeEEEEecC--CC-cceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 173 FSMFGERGKYLI-SGGNDKLVKVWDCS--RF-QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 173 ~~p~~~~~~~l~-s~~~d~~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
|+ |+++.++ +.+.++.|.+||+. ++ .... ...+..+......+..+++.+ +|.+.++...++.|.+||
T Consensus 186 ~s---~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~----~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 186 FS---PDGTTGYFVDTKVNRLMRVPLDARTGLPTGK----AEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp EC---TTSCEEEEEETTTCEEEEEEBCTTTCCBSSC----CEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEEC
T ss_pred Ec---CCCCEEEEEECCCCEEEEEEcccccCCcccC----ceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEEC
Confidence 99 8987664 44567899999986 43 2110 012222222344567788876 777666665667888887
Q ss_pred C
Q 025649 249 I 249 (250)
Q Consensus 249 ~ 249 (250)
.
T Consensus 258 ~ 258 (326)
T 2ghs_A 258 T 258 (326)
T ss_dssp T
T ss_pred C
Confidence 4
No 219
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.23 E-value=3.9e-09 Score=81.12 Aligned_cols=211 Identities=13% Similarity=-0.018 Sum_probs=130.8
Q ss_pred CcEEEEcccc----eeeeeec------cCCCCCeeeEEEcCCCCeEEEEecCC------CeEEEEEccCCCCccceecCC
Q 025649 1 MWQIIDIRQH----CLYKSLR------AGHSSICSSVQFIPWKPWEVISGGLD------SKLVMWDFSKGRPNKIVNFGL 64 (250)
Q Consensus 1 ti~iwd~~~~----~~~~~l~------~~h~~~v~~l~~~~~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~ 64 (250)
+|.++|+.+. +..+++. ......-..+.++|+| +++++..+ |.|.+.|..+++.+.++..+.
T Consensus 107 ~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~ 184 (462)
T 2ece_A 107 RIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDR 184 (462)
T ss_dssp CEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBC
T ss_pred eEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCC
Confidence 4789998765 6666661 0112245677889999 56666555 789999999999988887441
Q ss_pred CCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe-------------------CCCeEEEEeCCCceeEeeccCC-
Q 025649 65 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-------------------GDGVVDVINIESELNISRSKST- 124 (250)
Q Consensus 65 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-------------------~d~~i~~~d~~~~~~~~~~~~~- 124 (250)
. ....-+.+.|+| +++.+++.. .+.+|.+||+.+++....+...
T Consensus 185 ~----------~~~~~Yd~~~~p------~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 185 G----------DQYLAYDFWWNL------PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp T----------TCCCCCCEEEET------TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred C----------CccccceEEECC------CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 0 011234566787 888888874 4789999999998777766654
Q ss_pred CCCCccce--eecccceeEEEeee-----eeeccC---------eeeeee--------cccc-------CccccEEEEEe
Q 025649 125 TKPLKGSQ--STSKVNIRDAEMEI-----LDQSGG---------KRLHLD--------YSVG-------GHTAAASCVAF 173 (250)
Q Consensus 125 ~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~---------~~~~~~--------~~~~-------~h~~~v~~~~~ 173 (250)
.......+ +++|+++++..... .+.... ...+.+ ..+. +-......+.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 22334445 45999988774333 111110 000100 0110 00234678899
Q ss_pred ecCCCCCcEEEEeeC-CCeEEEEecCCCcceecccccceeeeeecc--------------CCceeEEEecCCCCCeEEEe
Q 025649 174 SMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNINL--------------NKKVNWLCTTPTESENLVVC 238 (250)
Q Consensus 174 ~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~l~s~ 238 (250)
+ ++|++|..+.. .+.|.+||+...... +++...... ......++++| ||++|+++
T Consensus 329 S---~DGrfLYVSnrg~d~VavfdV~d~~~~------~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVa 398 (462)
T 2ece_A 329 S---LDDKFLYLSLWGIGEVRQYDISNPFKP------VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVT 398 (462)
T ss_dssp C---TTSCEEEEEETTTTEEEEEECSSTTSC------EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEE
T ss_pred C---CCCCEEEEEeCCCCEEEEEEecCCCCc------EEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEE
Confidence 9 89999888765 789999998643211 222222111 11357788887 89888887
Q ss_pred e
Q 025649 239 D 239 (250)
Q Consensus 239 ~ 239 (250)
.
T Consensus 399 N 399 (462)
T 2ece_A 399 N 399 (462)
T ss_dssp C
T ss_pred c
Confidence 7
No 220
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.20 E-value=1.9e-09 Score=81.96 Aligned_cols=213 Identities=10% Similarity=0.022 Sum_probs=126.7
Q ss_pred CcEEEEcccceeeeeeccCC------CCCeeeEEEcCCCCeEEEEec-CCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGH------SSICSSVQFIPWKPWEVISGG-LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h------~~~v~~l~~~~~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 73 (250)
+|.+||..+++.+.++..+. ...-..++|+|||+.++++.. .++.|.++|+.+++.+.++..+
T Consensus 110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---------- 179 (386)
T 3sjl_D 110 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---------- 179 (386)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----------
T ss_pred EEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC----------
Confidence 37899999999998886221 124568999999994444433 3789999999999998888744
Q ss_pred ccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC-ceeEeecc---CCCC-CCccceeec-ccceeEEE----
Q 025649 74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRSK---STTK-PLKGSQSTS-KVNIRDAE---- 143 (250)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~---~~~~-~~~~~~~~~-~~~~~~~~---- 143 (250)
. . ... .| ...+.+++.+.||.+.+.++.. ++...... .... .......|. ++|++++.
T Consensus 180 ----g-~-~~~-~P-----~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g 247 (386)
T 3sjl_D 180 ----D-C-YHI-FP-----TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTG 247 (386)
T ss_dssp ----S-E-EEE-EE-----EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTS
T ss_pred ----C-c-cee-ec-----CCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCC
Confidence 1 1 111 23 2456777888899999998876 55422111 1111 111223453 67765442
Q ss_pred -eeeeeeccCeeeeeecccc---------C-ccccEEEEEeecCCCCCcEEEEeeC----------CCeEEEEecCCCcc
Q 025649 144 -MEILDQSGGKRLHLDYSVG---------G-HTAAASCVAFSMFGERGKYLISGGN----------DKLVKVWDCSRFQG 202 (250)
Q Consensus 144 -~~~~~~~~~~~~~~~~~~~---------~-h~~~v~~~~~~p~~~~~~~l~s~~~----------d~~i~iwd~~~~~~ 202 (250)
+...|.... ..+.+..+. + .......++++ ++++.+..... .+.|.+.|+++.+
T Consensus 248 ~V~v~d~~~~-~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~---~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k- 322 (386)
T 3sjl_D 248 KIHQIDLSSG-DAKFLPAVEALTEAERADGWRPGGWQQVAYH---RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE- 322 (386)
T ss_dssp EEEEEECTTS-SCEECCCEESSCHHHHHTTEEECSSSCEEEE---TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-
T ss_pred EEEEEECCCC-cceeecceeccccccccccccCCCcceeeEC---CCCCeEEEEeccccccccCCCCCEEEEEECCCCe-
Confidence 111222111 111111111 1 11223346778 77776666532 2579999999973
Q ss_pred eecccccceeeeeeccCCceeEEEecCCCCC-eEEEe-eCCceEEEEeCC
Q 025649 203 VQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVC-DTSKVVKVYSIS 250 (250)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~-~~d~~i~vw~~~ 250 (250)
.+..+ .-...+++|++++ |++ +|++. ..++.|.++|..
T Consensus 323 --------v~~~i-~vg~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 323 --------RLAKF-EMGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp --------EEEEE-EEEEEECEEEECS-SSSCEEEEEETTTTEEEEEETT
T ss_pred --------EEEEE-ECCCCcceEEECC-CCCeEEEEEcCCCCeEEEEECC
Confidence 33332 2234788999998 765 66664 458999999963
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.17 E-value=3.1e-09 Score=88.03 Aligned_cols=213 Identities=8% Similarity=0.029 Sum_probs=116.3
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC-------------eEEEEEccCCCCccceecCCCCC
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS-------------KLVMWDFSKGRPNKIVNFGLPEN 67 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg-------------~v~iwd~~~~~~~~~~~~~~~~~ 67 (250)
+|++||+++++.+.... +......++|+ |++ .|+.++.+. .|++|++.++......-...
T Consensus 156 ~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-Dg~-~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~--- 228 (693)
T 3iuj_A 156 EIHLMDVESKQPLETPL--KDVKFSGISWL-GNE-GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA--- 228 (693)
T ss_dssp EEEEEETTTCSEEEEEE--EEEESCCCEEE-TTT-EEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC---
T ss_pred EEEEEECCCCCCCcccc--CCceeccEEEe-CCC-EEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec---
Confidence 47899999998654311 11123678899 998 566666653 49999987765422222110
Q ss_pred CCCCCccc-CCCceeEEecCCCcccCCCCCEEEEEeC----CCeEEEEeCCCce-eEeeccCCCCCCccceeecccceeE
Q 025649 68 NGNAGQCY-NPAFVHAIAIPDADMLDKTNKICVVAKG----DGVVDVINIESEL-NISRSKSTTKPLKGSQSTSKVNIRD 141 (250)
Q Consensus 68 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (250)
.. ++....++.++| ++++|+.... ++.|.++|+.++. ....+.... ...... ++++|..+
T Consensus 229 ------~~~~~~~~~~~~~Sp------Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~-~~~~~~-~~~~g~~l 294 (693)
T 3iuj_A 229 ------IPAQHHRYVGATVTE------DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL-DADVSL-VDNKGSTL 294 (693)
T ss_dssp ------SGGGCCSEEEEEECT------TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS-SSCEEE-EEEETTEE
T ss_pred ------CCCCCeEEEEEEEcC------CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC-CceEEE-EeccCCEE
Confidence 00 123467888998 9998865432 3589999998753 222222221 222222 56666655
Q ss_pred EEeeeeeec-------cCeeee--eeccccCccccEEEEEeecCCCCCcEEEEeeC-CC--eEEEEecCCCcceeccccc
Q 025649 142 AEMEILDQS-------GGKRLH--LDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DK--LVKVWDCSRFQGVQTSINN 209 (250)
Q Consensus 142 ~~~~~~~~~-------~~~~~~--~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~ 209 (250)
+.....+.. ...... ....+..|...+. .|+ +++++|+.... ++ .|++||+..+.
T Consensus 295 ~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s---~~g~~lv~~~~~~g~~~l~~~d~~g~~-------- 361 (693)
T 3iuj_A 295 YLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVH---SGSGYLFAEYMVDATARVEQFDYEGKR-------- 361 (693)
T ss_dssp EEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEE---EETTEEEEEEEETTEEEEEEECTTSCE--------
T ss_pred EEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEE---EECCEEEEEEEECCeeEEEEEECCCCe--------
Confidence 522211110 000100 1123444554444 778 67777766654 44 68999988642
Q ss_pred ceeeeeeccCCceeEEEecCCCCCeEEEeeCC----ceEEEEeC
Q 025649 210 DLLIKNINLNKKVNWLCTTPTESENLVVCDTS----KVVKVYSI 249 (250)
Q Consensus 210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~vw~~ 249 (250)
...........+..+.+++ ++..++....+ +.|..||+
T Consensus 362 -~~~l~~p~~~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 362 -VREVALPGLGSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp -EEEECCSSSSEEEECCCCT-TCSCEEEEEECSSSCCEEEEECT
T ss_pred -eEEeecCCCceEEeeecCC-CCCEEEEEecCCCCCCEEEEEEC
Confidence 1111123334566666666 55544443333 77888875
No 222
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.14 E-value=2.5e-08 Score=71.31 Aligned_cols=200 Identities=12% Similarity=0.003 Sum_probs=118.4
Q ss_pred ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649 10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD 87 (250)
Q Consensus 10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 87 (250)
-+.++++......-...|.|+ ++. ++.+.+.+| .|+.+|+.+++.+..+..+ .......+++.
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~l~------------~~~FgeGit~~- 95 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIELG------------KRYFGEGISDW- 95 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEECC------------TTCCEEEEEEE-
T ss_pred eEEEEEecCCCCcccceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEecC------------CccceeEEEEe-
Confidence 355667762223345899998 565 777777766 8999999999998888754 11112234433
Q ss_pred CcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-e--eeeccCeeeeeeccccC-
Q 025649 88 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-I--LDQSGGKRLHLDYSVGG- 163 (250)
Q Consensus 88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~- 163 (250)
.+++.+..-.++.+.+||..+.+.+..+.... ....++++++.+..+. . ....+....+.+.++..
T Consensus 96 ------g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~ 165 (262)
T 3nol_A 96 ------KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT 165 (262)
T ss_dssp ------TTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE
T ss_pred ------CCEEEEEEeeCCEEEEEECccCcEEEEEECCC----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec
Confidence 23444445578999999999999888777642 3345556676665321 1 11112222333333322
Q ss_pred ---cc-ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee---eeccCCceeEEEecCCCCCeEE
Q 025649 164 ---HT-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK---NINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 164 ---h~-~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
.. ..++.+.|. +|+..+..-.+..|.+.|.++++.........+... ...-....+.|++.|...++++
T Consensus 166 ~~g~~~~~lNELe~~----~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfV 241 (262)
T 3nol_A 166 AHGEELPELNELEWV----DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFV 241 (262)
T ss_dssp ETTEECCCEEEEEEE----TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEE
T ss_pred cCCccccccceeEEE----CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEE
Confidence 11 334567775 677666666788999999999865533222111110 0111235789999985444455
Q ss_pred Ee
Q 025649 237 VC 238 (250)
Q Consensus 237 s~ 238 (250)
+|
T Consensus 242 TG 243 (262)
T 3nol_A 242 TG 243 (262)
T ss_dssp EE
T ss_pred EC
Confidence 54
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.12 E-value=6e-09 Score=86.31 Aligned_cols=196 Identities=10% Similarity=-0.034 Sum_probs=110.5
Q ss_pred CCCCCeeeEEEcCCCCeEEE-----EecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 19 GHSSICSSVQFIPWKPWEVI-----SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~-----s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
+|...+..++|||||+ +|+ .|+...+|++||+.+++.+.... . .....+++|+
T Consensus 126 ~~~~~l~~~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~-------------~~k~~~~~Ws------- 183 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPLETPL-K-------------DVKFSGISWL------- 183 (693)
T ss_dssp TSCCEEEEEEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEEEEEE-E-------------EEESCCCEEE-------
T ss_pred CCcEEEEEEEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCCcccc-C-------------CceeccEEEe-------
Confidence 4566788999999999 566 23444689999999987543211 1 0001233443
Q ss_pred CCCEEEEEeCCC-------------eEEEEeCCCcee--EeeccCC--CCCCccceeecccceeEEEeeeeeecc-----
Q 025649 94 TNKICVVAKGDG-------------VVDVINIESELN--ISRSKST--TKPLKGSQSTSKVNIRDAEMEILDQSG----- 151 (250)
Q Consensus 94 ~~~~l~~~~~d~-------------~i~~~d~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 151 (250)
|++.|+.++.+. .|++|++.++.. ....... +......+.++|||++++.........
T Consensus 184 Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 184 GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV 263 (693)
T ss_dssp TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence 677777777663 499999987543 1112221 123467789999999887322211110
Q ss_pred --Ceee-eeeccccCccccEEEEEeecCCCCCcEEEEeeCC---CeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649 152 --GKRL-HLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 225 (250)
Q Consensus 152 --~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (250)
.... .....+..+....... +++ .++.+++....+ +.|..+|+.++.. .....+..|...+.
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~--~g~~l~~~t~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~-- 331 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDN--KGSTLYLLTNRDAPNRRLVTVDAANPGP-------AHWRDLIPERQQVL-- 331 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCE--
T ss_pred EECCCCCCceEEEeCCCCceEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCc-------cccEEEecCCCCEE--
Confidence 0000 0122333344444444 441 334455555443 6899999988632 11234455655554
Q ss_pred EecCCCCCeEEEee-CCc--eEEEEeC
Q 025649 226 CTTPTESENLVVCD-TSK--VVKVYSI 249 (250)
Q Consensus 226 ~~~~~~~~~l~s~~-~d~--~i~vw~~ 249 (250)
.|++ +++.|+... .++ .|++|++
T Consensus 332 ~~s~-~g~~lv~~~~~~g~~~l~~~d~ 357 (693)
T 3iuj_A 332 TVHS-GSGYLFAEYMVDATARVEQFDY 357 (693)
T ss_dssp EEEE-ETTEEEEEEEETTEEEEEEECT
T ss_pred EEEE-ECCEEEEEEEECCeeEEEEEEC
Confidence 6776 666666554 454 6777775
No 224
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.10 E-value=8.9e-08 Score=67.87 Aligned_cols=201 Identities=10% Similarity=-0.031 Sum_probs=119.9
Q ss_pred ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649 10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD 87 (250)
Q Consensus 10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 87 (250)
-+.+.++.+....-...|.|++ +. ++.+.+.+| .|+.+|+.+++.+..+..+ ....-..+++.
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~-~~-LyestG~~g~S~v~~vD~~tgkv~~~~~l~------------~~~fgeGi~~~- 73 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLR-GH-LYESTGETGRSSVRKVDLETGRILQRAEVP------------PPYFGAGIVAW- 73 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEET-TE-EEEEECCTTSCEEEEEETTTCCEEEEEECC------------TTCCEEEEEEE-
T ss_pred eEEEEEcCCCCccccccEEEEC-CE-EEEECCCCCCceEEEEECCCCCEEEEEeCC------------CCcceeEEEEe-
Confidence 3566677622234577999987 44 677777754 8999999999998888754 11122334433
Q ss_pred CcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE-eeeeee--ccCeeeeeeccccCc
Q 025649 88 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE-MEILDQ--SGGKRLHLDYSVGGH 164 (250)
Q Consensus 88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~h 164 (250)
.+++....-.++.+.+||..+.+.+.++.... ....+.+++..+.. .+.... .+....+.+.++...
T Consensus 74 ------~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~----~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 74 ------RDRLIQLTWRNHEGFVYDLATLTPRARFRYPG----EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp ------TTEEEEEESSSSEEEEEETTTTEEEEEEECSS----CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred ------CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC----CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc
Confidence 34555555678999999999999888877653 22344466665542 221111 122233333333221
Q ss_pred --c---ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee----eccCCceeEEEecCCCCCeE
Q 025649 165 --T---AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN----INLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 165 --~---~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l 235 (250)
. ..++.+.+. +|+.++..-.+..|.+.|.++++......-..+.... ..-....+.|++.|...+++
T Consensus 144 ~~g~~~~~lNeLe~~----~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf 219 (243)
T 3mbr_X 144 AGGRPLDNLNELEWV----NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF 219 (243)
T ss_dssp ETTEECCCEEEEEEE----TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred cCCcccccceeeEEe----CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence 1 245667775 6777766666889999999999655332221111111 11224578999998555555
Q ss_pred EEee
Q 025649 236 VVCD 239 (250)
Q Consensus 236 ~s~~ 239 (250)
+||-
T Consensus 220 VTGK 223 (243)
T 3mbr_X 220 VTGK 223 (243)
T ss_dssp EEET
T ss_pred EECC
Confidence 5553
No 225
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.10 E-value=1.2e-07 Score=73.07 Aligned_cols=230 Identities=10% Similarity=-0.045 Sum_probs=130.0
Q ss_pred cEEEEccc-----ceeeeeeccCCC-CCeeeEEE-----------c--CCCCeEEEEecCCCeEEEEEccCC----CCcc
Q 025649 2 WQIIDIRQ-----HCLYKSLRAGHS-SICSSVQF-----------I--PWKPWEVISGGLDSKLVMWDFSKG----RPNK 58 (250)
Q Consensus 2 i~iwd~~~-----~~~~~~l~~~h~-~~v~~l~~-----------~--~~~~~~l~s~s~dg~v~iwd~~~~----~~~~ 58 (250)
|.+.|+.. ++.+..+.-.+. +....+.| + ++++.+++++..+++|.++|+.+. +..+
T Consensus 45 la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k 124 (462)
T 2ece_A 45 IAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIK 124 (462)
T ss_dssp EEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEE
T ss_pred EEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeee
Confidence 34566665 666665542221 13333444 6 788867788899999999999754 3333
Q ss_pred ceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC------CeEEEEeCCCceeEeeccCCCC--CCcc
Q 025649 59 IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD------GVVDVINIESELNISRSKSTTK--PLKG 130 (250)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~--~~~~ 130 (250)
++... ..........-+.+...| ++ +++++..+ +.|.++|.++.+.+........ ....
T Consensus 125 ~ie~~------~~~~~~g~s~Ph~~~~~p------dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Y 191 (462)
T 2ece_A 125 VIEPE------EVKKVSGYSRLHTVHCGP------DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAY 191 (462)
T ss_dssp EECHH------HHHHHHCEEEEEEEEECS------SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCC
T ss_pred eechh------hcccccCCCcccceeECC------Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccc
Confidence 33100 000000012345667777 88 66666655 7899999999998887764422 2344
Q ss_pred ceeecccceeEEEeeeee-----------------------eccCeeeeeeccccC--ccccEEEEEe--ecCCCCCcEE
Q 025649 131 SQSTSKVNIRDAEMEILD-----------------------QSGGKRLHLDYSVGG--HTAAASCVAF--SMFGERGKYL 183 (250)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~--h~~~v~~~~~--~p~~~~~~~l 183 (250)
.+.|+|+++.++++. |- .++....+.+.++.. .......+.| + |+++++
T Consensus 192 d~~~~p~~~~mvsS~-wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~---Pdg~~a 267 (462)
T 2ece_A 192 DFWWNLPNEVLVSSE-WAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHD---PTKLMG 267 (462)
T ss_dssp CEEEETTTTEEEECB-CCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSS---TTCCEE
T ss_pred eEEECCCCCEEEEcc-CcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeEC---CCCCEE
Confidence 577899999888542 10 011111222333332 1123445555 7 899888
Q ss_pred EEee------CCCeEEEEecCCCcceec--ccccc--eeeee-------eccCCceeEEEecCCCCCeEEEeeC-CceEE
Q 025649 184 ISGG------NDKLVKVWDCSRFQGVQT--SINND--LLIKN-------INLNKKVNWLCTTPTESENLVVCDT-SKVVK 245 (250)
Q Consensus 184 ~s~~------~d~~i~iwd~~~~~~~~~--~~~~~--~~~~~-------~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~ 245 (250)
..++ .+++|.+|....+..... ...+. ....+ .+-...+..+.+++ |+++|+++.. .+.|.
T Consensus 268 YV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-DGrfLYVSnrg~d~Va 346 (462)
T 2ece_A 268 FINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL-DDKFLYLSLWGIGEVR 346 (462)
T ss_dssp EEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT-TSCEEEEEETTTTEEE
T ss_pred EEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC-CCCEEEEEeCCCCEEE
Confidence 7776 466888877655321110 00000 00000 00124577888887 8888877664 68999
Q ss_pred EEeC
Q 025649 246 VYSI 249 (250)
Q Consensus 246 vw~~ 249 (250)
+||+
T Consensus 347 vfdV 350 (462)
T 2ece_A 347 QYDI 350 (462)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9986
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.09 E-value=6.7e-08 Score=71.89 Aligned_cols=207 Identities=9% Similarity=-0.052 Sum_probs=119.2
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|..|+. +++ ...+. .+...+..++++++|+ ++++...++.|.+|+.. ++. ..+.... .. .....+.
T Consensus 69 i~~~~~-~g~-~~~~~-~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~~-~~~~~~~------~~--~~~~~~~ 134 (305)
T 3dr2_A 69 VLGWRE-DGT-VDVLL-DATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQA-HLLVGRY------AG--KRLNSPN 134 (305)
T ss_dssp EEEEET-TSC-EEEEE-ESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCE-EEEECEE------TT--EECSCCC
T ss_pred EEEEeC-CCC-EEEEe-CCCCccceeeECCCCC-EEEEECCCCEEEEECCC-CCE-EEEEecc------CC--CccCCCC
Confidence 456665 344 34455 5667789999999998 77766667899999985 542 2221010 00 0112356
Q ss_pred EEecCCCcccCCCCCEEEE----EeC-------------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe
Q 025649 82 AIAIPDADMLDKTNKICVV----AKG-------------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 144 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~----~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (250)
.+++.| +|+++++ |.. .+.|..+|..+++..... .......++|+|+++.+...
T Consensus 135 ~i~~d~------dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~gl~~spdg~~lyv~ 205 (305)
T 3dr2_A 135 DLIVAR------DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPNGLAFSPDEQTLYVS 205 (305)
T ss_dssp CEEECT------TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEEEEEECTTSSEEEEE
T ss_pred CEEECC------CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCcceEEcCCCCEEEEE
Confidence 788888 8988886 332 356888888766544332 12455679999999866533
Q ss_pred eee-------eec--cCe--eeeeeccc-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccccee
Q 025649 145 EIL-------DQS--GGK--RLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL 212 (250)
Q Consensus 145 ~~~-------~~~--~~~--~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 212 (250)
... ... ... .......+ .........+++. ++|++.++. .+ .|.+||... +.+
T Consensus 206 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d---~~G~lwv~~-~~-gv~~~~~~g----------~~~ 270 (305)
T 3dr2_A 206 QTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD---RGGWLWSSS-GT-GVCVFDSDG----------QLL 270 (305)
T ss_dssp ECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC---TTSCEEECC-SS-EEEEECTTS----------CEE
T ss_pred ecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC---CCCCEEEec-CC-cEEEECCCC----------CEE
Confidence 221 010 000 00000011 1112334567888 888855544 44 599999854 333
Q ss_pred eeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 213 IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 213 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
..+..+. .+..++|.+ +++.|..++.++ +..+++
T Consensus 271 ~~~~~~~-~~~~~~f~~-d~~~L~it~~~~-l~~~~~ 304 (305)
T 3dr2_A 271 GHIPTPG-TASNCTFDQ-AQQRLFITGGPC-LWMLPL 304 (305)
T ss_dssp EEEECSS-CCCEEEECT-TSCEEEEEETTE-EEEEEC
T ss_pred EEEECCC-ceeEEEEeC-CCCEEEEEcCCe-EEEEEC
Confidence 3333333 588899985 777777777665 443443
No 227
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.08 E-value=9.4e-08 Score=68.37 Aligned_cols=199 Identities=10% Similarity=-0.018 Sum_probs=120.9
Q ss_pred eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649 11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM 90 (250)
Q Consensus 11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (250)
+.+.++......-...|.|+. +. ++.+.+.+|.|+.+|+++++.+..+ .+ .......+++.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~-Ly~stG~~g~v~~iD~~Tgkv~~~~-l~------------~~~FgeGit~~---- 104 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GH-FFESTGHQGTLRQLSLESAQPVWME-RL------------GNIFAEGLASD---- 104 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TE-EEEEETTTTEEEECCSSCSSCSEEE-EC------------TTCCEEEEEEC----
T ss_pred EEEEEEcCCCccccceEEEEC-CE-EEEEcCCCCEEEEEECCCCcEEeEE-CC------------CCcceeEEEEe----
Confidence 556666622234457899984 44 8888899999999999999998887 55 11122345554
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-ee--eeccCeeeeeeccccC--cc
Q 025649 91 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-IL--DQSGGKRLHLDYSVGG--HT 165 (250)
Q Consensus 91 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~--h~ 165 (250)
.+++.+..-.++.+.+||..+.+.+..+..... ...++++++.+..+. .. ...+....+.+.++.. +.
T Consensus 105 ---g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e----GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g 177 (268)
T 3nok_A 105 ---GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE----GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRG 177 (268)
T ss_dssp ---SSCEEEEESSSCEEEEEETTTTEEEEEEECSSC----CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred ---CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc----eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCC
Confidence 345555566789999999999998888776421 234446666665322 11 1112223333333322 11
Q ss_pred ---ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee----eeccCCceeEEEecCCCCCeEEEe
Q 025649 166 ---AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK----NINLNKKVNWLCTTPTESENLVVC 238 (250)
Q Consensus 166 ---~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~ 238 (250)
..++.+.|. +|+..+....+..|.+.|.++++......-..+... ...-....+.|++.|...++++||
T Consensus 178 ~~v~~lNeLe~~----dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 178 QPVELINELECA----NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECCCEEEEEEE----TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cccccccccEEe----CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 235677776 677666666788999999999865532211111100 011224578999998666666666
Q ss_pred e
Q 025649 239 D 239 (250)
Q Consensus 239 ~ 239 (250)
-
T Consensus 254 K 254 (268)
T 3nok_A 254 K 254 (268)
T ss_dssp T
T ss_pred C
Confidence 3
No 228
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.03 E-value=1.4e-07 Score=72.14 Aligned_cols=194 Identities=6% Similarity=-0.081 Sum_probs=101.6
Q ss_pred cEEEEcccceeeeeeccC------CCCCeeeEEEcCCCCeEEEEec-C-CCeEEEEEccCCCCccc-eecCCCC----CC
Q 025649 2 WQIIDIRQHCLYKSLRAG------HSSICSSVQFIPWKPWEVISGG-L-DSKLVMWDFSKGRPNKI-VNFGLPE----NN 68 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~------h~~~v~~l~~~~~~~~~l~s~s-~-dg~v~iwd~~~~~~~~~-~~~~~~~----~~ 68 (250)
|.+||..+++.+..+..+ +...-..+.|+|+|+ +|+.+. . ++.|.++| .+++.+.. +..+... ..
T Consensus 99 v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~ 176 (373)
T 2mad_H 99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGA 176 (373)
T ss_pred EEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC-EEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCC
Confidence 678999988888777521 012345899999999 566554 3 58899999 99888777 6533100 00
Q ss_pred CCCCccc-CC---------Ccee-EEe-----cC--CC---cccCCCCCEEEEEeCCCeEEEEeCCCceeE--eeccCC-
Q 025649 69 GNAGQCY-NP---------AFVH-AIA-----IP--DA---DMLDKTNKICVVAKGDGVVDVINIESELNI--SRSKST- 124 (250)
Q Consensus 69 ~~~~~~~-~~---------~~v~-~~~-----~~--~~---~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~- 124 (250)
....... .. ..+. ... .. |. ..+.+++..++..+..+.+.+.|+..+... ..+...
T Consensus 177 ~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~ 256 (373)
T 2mad_H 177 PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALS 256 (373)
T ss_pred CceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecC
Confidence 0000000 00 0000 000 00 00 000012222222234566777777543211 111100
Q ss_pred --------CCCCccceeecccceeEEEeee-------------eeeccCeeeeeeccccCccccEEEEEeecCCCCCc-E
Q 025649 125 --------TKPLKGSQSTSKVNIRDAEMEI-------------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK-Y 182 (250)
Q Consensus 125 --------~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~ 182 (250)
.......+.++|+++.+..... ....+....+.+.++.. .....+++|+ |+|+ +
T Consensus 257 ~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s---~Dg~~~ 332 (373)
T 2mad_H 257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVA---QDGGPD 332 (373)
T ss_pred CcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEEC---CCCCeE
Confidence 0011223678888877663221 11112333444455543 2357899999 8998 7
Q ss_pred EEEee-CCCeEEEEecCCCc
Q 025649 183 LISGG-NDKLVKVWDCSRFQ 201 (250)
Q Consensus 183 l~s~~-~d~~i~iwd~~~~~ 201 (250)
++++. .++.|.++|+.+++
T Consensus 333 l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 333 LYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEEEcCCCCeEEEEECCCCC
Confidence 77776 48999999999983
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.97 E-value=2.4e-07 Score=76.38 Aligned_cols=109 Identities=14% Similarity=-0.013 Sum_probs=71.2
Q ss_pred cEEEEcccceeeeeeccCCCCC--------------------------------eeeEEEcCCCCeEEEEecCCC-----
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSI--------------------------------CSSVQFIPWKPWEVISGGLDS----- 44 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~--------------------------------v~~l~~~~~~~~~l~s~s~dg----- 44 (250)
|+.+|.++|+.+.++. ..... ...++++|++. +++.++.++
T Consensus 192 v~a~D~~tG~~~W~~~-~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~ 269 (677)
T 1kb0_A 192 ITAYDAETGERKWRWF-SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSH 269 (677)
T ss_dssp EEEEETTTCCEEEEEE-SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCH
T ss_pred EEEEECCCCcEEEEec-cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccC
Confidence 6789999999988776 32111 13578889888 777776654
Q ss_pred --------------eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCC---CEEEEEeCCCeE
Q 025649 45 --------------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN---KICVVAKGDGVV 107 (250)
Q Consensus 45 --------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~l~~~~~d~~i 107 (250)
.|..+|.++|+.+..++....+.-.. . ......-+.... +| ..++.++.+|.+
T Consensus 270 ~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~---~-~~~~p~l~~~~~------dG~~~~~l~~~~~~G~l 339 (677)
T 1kb0_A 270 KVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY---T-STQPMILADIKI------AGKPRKVILHAPKNGFF 339 (677)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC---C-CCSCCEEEEEEE------TTEEEEEEEECCTTSEE
T ss_pred CCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc---c-cCCCcEEEeccc------CCcEeeEEEEECCCCEE
Confidence 59999999999988887541110000 0 000111111111 45 688999999999
Q ss_pred EEEeCCCceeEeecc
Q 025649 108 DVINIESELNISRSK 122 (250)
Q Consensus 108 ~~~d~~~~~~~~~~~ 122 (250)
+++|.++++.+....
T Consensus 340 ~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 340 FVLDRTNGKFISAKN 354 (677)
T ss_dssp EEEETTTCCEEEEEE
T ss_pred EEEECCCCCEecccc
Confidence 999999998875543
No 230
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.97 E-value=9.9e-08 Score=72.22 Aligned_cols=209 Identities=5% Similarity=-0.046 Sum_probs=117.5
Q ss_pred CCeeeEEEcCCCCeEEEEec--CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649 22 SICSSVQFIPWKPWEVISGG--LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 99 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 99 (250)
.....++++|+|+ ++++.. .++.++||.+.+++. ..+... . ...+.+-..++++++.+ ++++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~--~----~~~~~~~~~p~gv~~d~------~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGL-IPFPPQ--S----GNAIITFDTVLGIKSDG------NGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEE-EESCCC--C----SSCCCCCSCEEEEEECS------SSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCe-ecCCCc--c----cCcccceeEeeEEEEcC------CCcEEE
Confidence 6789999999998 788753 234366666654432 222100 0 01112445789999998 777666
Q ss_pred EEeC-----CCeEEEEeCCCceeEeeccCC-----CCCCccceeecccc-eeEEEeee--eeec----cCeeeeeecccc
Q 025649 100 VAKG-----DGVVDVINIESELNISRSKST-----TKPLKGSQSTSKVN-IRDAEMEI--LDQS----GGKRLHLDYSVG 162 (250)
Q Consensus 100 ~~~~-----d~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~--~~~~----~~~~~~~~~~~~ 162 (250)
+-.. ++.|.+||+.+++....+..+ .......+++++++ ..+++... .+.. +....+..+.+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence 6544 578999999988865544332 12345788999754 44342210 1100 101111111111
Q ss_pred Cc-----------------------------cccEEEEEeecCCCCCcEEEEeeCCC-eEEEEecCCCcceeccccccee
Q 025649 163 GH-----------------------------TAAASCVAFSMFGERGKYLISGGNDK-LVKVWDCSRFQGVQTSINNDLL 212 (250)
Q Consensus 163 ~h-----------------------------~~~v~~~~~~p~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~ 212 (250)
+| ...+..++|+ |+|+.|+.+..++ .+..++........ ....+..
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s---~dg~~ly~~~~~~~~l~~~~~~~~~~~~-~~~~~~~ 238 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLD---AENEWLYLSPMHSTSMYRIKSADLSNLQ-LTDAELG 238 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEEC---TTSCEEEEEESSCSEEEEEEHHHHTCTT-CCHHHHH
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEec---cCCCEEEEEeCCCCeEEEEEHHHhcCCC-CChhhhh
Confidence 11 1236889999 8998888777655 55555532110000 0000110
Q ss_pred e--eeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 213 I--KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 213 ~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
. ...++......+++.+ +|.++++...++.|.+||.
T Consensus 239 ~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 239 SKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp TTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEET
T ss_pred cceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEEC
Confidence 0 1123444567788987 7888888888899999985
No 231
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.96 E-value=1e-07 Score=75.83 Aligned_cols=210 Identities=11% Similarity=-0.093 Sum_probs=127.5
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEE-c-CCCCeEEEEe------------------cCCCeEEEEEccCCCCcccee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQF-I-PWKPWEVISG------------------GLDSKLVMWDFSKGRPNKIVN 61 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~-~-~~~~~~l~s~------------------s~dg~v~iwd~~~~~~~~~~~ 61 (250)
|.+.|+.+.++.+.+..........+++ + |+++ +++.+ -.++.+.+.|..+.+....+.
T Consensus 114 VavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~ 192 (595)
T 1fwx_A 114 VARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL 192 (595)
T ss_dssp EEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEE
Confidence 6788999999887443113345789998 5 9999 56555 345689999999988888877
Q ss_pred cCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC------------------------------------
Q 025649 62 FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG------------------------------------ 105 (250)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~------------------------------------ 105 (250)
.+ ..-..++++| +++++++.+.+.
T Consensus 193 Vg--------------g~pd~~~~sp------dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 193 VS--------------GNLDNCDADY------EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp ES--------------SCCCCEEECS------SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred eC--------------CCccceEECC------CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 54 1234566776 788777776543
Q ss_pred --eEEEEeCCC--cee-EeeccCCCCCCccceeecccceeEEEee-------eeeeccCe---------eeeeeccccCc
Q 025649 106 --VVDVINIES--ELN-ISRSKSTTKPLKGSQSTSKVNIRDAEME-------ILDQSGGK---------RLHLDYSVGGH 164 (250)
Q Consensus 106 --~i~~~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~~~~~~h 164 (250)
.|.+.|.++ ++. ...+... ....++.++|||++++..+ ..+..... ...........
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG 330 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 330 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred ECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence 477777776 333 2233322 4677899999999988532 22222110 00112233222
Q ss_pred cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee-cccccceeeeeeccCCce-----eEEEecCCCCCeEEEe
Q 025649 165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ-TSINNDLLIKNINLNKKV-----NWLCTTPTESENLVVC 238 (250)
Q Consensus 165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~s~ 238 (250)
.....++|+ ++|...++.-.|+.|.+||+....... -....+.+....-|-.+- ..+...| ||++|+++
T Consensus 331 -~gP~h~aF~---~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~ 405 (595)
T 1fwx_A 331 -LGPLHTAFD---GRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCL 405 (595)
T ss_dssp -SCEEEEEEC---TTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEE
T ss_pred -CCcceEEEC---CCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEc
Confidence 346889999 899545556679999999987721100 000013444444443321 2223455 89998886
Q ss_pred e
Q 025649 239 D 239 (250)
Q Consensus 239 ~ 239 (250)
.
T Consensus 406 N 406 (595)
T 1fwx_A 406 S 406 (595)
T ss_dssp E
T ss_pred C
Confidence 5
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.92 E-value=3.3e-07 Score=75.77 Aligned_cols=107 Identities=12% Similarity=-0.005 Sum_probs=68.9
Q ss_pred cEEEEcccceeeeeeccCC-C-----------------------------CCeeeEEEcCCCCeEEEEecCCCe------
Q 025649 2 WQIIDIRQHCLYKSLRAGH-S-----------------------------SICSSVQFIPWKPWEVISGGLDSK------ 45 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h-~-----------------------------~~v~~l~~~~~~~~~l~s~s~dg~------ 45 (250)
|+.||.++|+.+.++.... . .....++++|++. +++.++.++.
T Consensus 185 v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~ 263 (689)
T 1yiq_A 185 VTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKW 263 (689)
T ss_dssp EEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHH
T ss_pred EEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCC
Confidence 6788999999887765110 0 1113678899887 7888887764
Q ss_pred -------------EEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC---EEEEEeCCCeEEE
Q 025649 46 -------------LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK---ICVVAKGDGVVDV 109 (250)
Q Consensus 46 -------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~l~~~~~d~~i~~ 109 (250)
|..+|.++|+.+..++....+.-. .. ............ +++ .++.++.+|.+++
T Consensus 264 ~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd---~~-~~~~~~l~d~~~------~G~~~~~v~~~~~~G~l~~ 333 (689)
T 1yiq_A 264 RSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWD---YT-ATQHMILAELPI------DGKPRKVLMQAPKNGFFYV 333 (689)
T ss_dssp HHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSC---CC-CCSCEEEEEEEE------TTEEEEEEEECCTTSEEEE
T ss_pred CCCCCCCceeeeeEEEEEccCCceeEeeecCCccccc---cc-CCCCcEEEeecc------CCcEEEEEEEECCCCeEEE
Confidence 999999999998887743100000 00 001111111111 344 7889999999999
Q ss_pred EeCCCceeEe
Q 025649 110 INIESELNIS 119 (250)
Q Consensus 110 ~d~~~~~~~~ 119 (250)
+|.++++.+.
T Consensus 334 lD~~tG~~l~ 343 (689)
T 1yiq_A 334 IDRATGELLS 343 (689)
T ss_dssp EETTTCCEEE
T ss_pred EECCCCCEec
Confidence 9999998774
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.86 E-value=3.8e-10 Score=86.36 Aligned_cols=140 Identities=12% Similarity=0.025 Sum_probs=72.8
Q ss_pred CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEe
Q 025649 32 WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 111 (250)
Q Consensus 32 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d 111 (250)
++. .+++++.||.|..||..+|+.+..+..+ .+.+..+.+ ++..+++++.|+.|+.||
T Consensus 8 ~~~-~v~~gs~dg~v~a~d~~tG~~~W~~~~~---------------~~~s~p~~~------~g~~~v~~s~dg~l~a~d 65 (369)
T 2hz6_A 8 PET-LLFVSTLDGSLHAVSKRTGSIKWTLKED---------------PVLQVPTHV------EEPAFLPDPNDGSLYTLG 65 (369)
T ss_dssp CTT-EEEEEETTSEEEEEETTTCCEEEEEECC---------------CSCCCC-----------CCEEECTTTCCEEEC-
T ss_pred eCC-EEEEEcCCCEEEEEECCCCCEEEEecCC---------------CceecceEc------CCCEEEEeCCCCEEEEEE
Confidence 345 7899999999999999999998887631 223333333 677888888999999999
Q ss_pred CCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCe
Q 025649 112 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 191 (250)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~ 191 (250)
..+++......... ...+ ..+|....+..+++++.|+.
T Consensus 66 ~~tG~~~w~~~~~~---------------------------------------~~~~---~~sp~~~~~~~v~~g~~dg~ 103 (369)
T 2hz6_A 66 SKNNEGLTKLPFTI---------------------------------------PELV---QASPCRSSDGILYMGKKQDI 103 (369)
T ss_dssp ----CCSEECSCCH---------------------------------------HHHH---TTCSCC-----CCCCEEEEE
T ss_pred CCCCceeeeeeccC---------------------------------------cccc---ccCceEecCCEEEEEeCCCE
Confidence 98776433221110 0000 01111113456777888999
Q ss_pred EEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 192 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 192 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
|+.||.++++.. -.+..+. ...++| ++..+++++.|+.|+.||.
T Consensus 104 v~a~D~~tG~~~---------w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~ 147 (369)
T 2hz6_A 104 WYVIDLLTGEKQ---------QTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDT 147 (369)
T ss_dssp EEEECCC------------------------------------EEEEEEEEEEECCCS
T ss_pred EEEEECCCCcEE---------EEecCCC----cccccc-cCCEEEEEecCCEEEEEEC
Confidence 999999998432 2222221 123445 6667888999999999986
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.85 E-value=5.3e-07 Score=67.54 Aligned_cols=202 Identities=9% Similarity=-0.091 Sum_probs=118.6
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|..+|.+ ++....+. .+...+.++...+++. +..++.++.|..+|.. ++.+..+... ...+.
T Consensus 119 l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~-------------~~~~~ 180 (330)
T 3hxj_A 119 LYAINTD-GTEKWRFK-TKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTN-------------DAITS 180 (330)
T ss_dssp EEEECTT-SCEEEEEE-CSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEEEEECS-------------SCCCS
T ss_pred EEEEcCC-CCEEEEEc-CCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecC-------------CCcee
Confidence 4566766 66666666 5555677777777776 6667778999999988 7766665533 22344
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe--eeeeeccCeeeeeec
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM--EILDQSGGKRLHLDY 159 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 159 (250)
++.+.+ ++.+++ ++ +.|..+| .+++........ ...+.++...++|...+.. +.....+. ..+.+.
T Consensus 181 ~~~~d~------~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~ 248 (330)
T 3hxj_A 181 AASIGK------DGTIYF-GS--DKVYAIN-PDGTEKWNFYAG-YWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKW 248 (330)
T ss_dssp CCEECT------TCCEEE-ES--SSEEEEC-TTSCEEEEECCS-SCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEE
T ss_pred eeEEcC------CCEEEE-Ee--CEEEEEC-CCCcEEEEEccC-CcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeE
Confidence 455544 566444 44 7899999 666655544433 2567788888887666531 11111111 111122
Q ss_pred cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649 160 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 239 (250)
Q Consensus 160 ~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 239 (250)
.+......+.++.+. +++ .|..++.+|.|..+|. ++ +.+.........+.++...+ ++. |..++
T Consensus 249 ~~~~~~~~~~~~~~~---~~g-~l~v~t~~ggl~~~d~-~g---------~~~~~~~~~~~~~~~~~~d~-~g~-l~~gt 312 (330)
T 3hxj_A 249 RFKTGKRIESSPVIG---NTD-TIYFGSYDGHLYAINP-DG---------TEKWNFETGSWIIATPVIDE-NGT-IYFGT 312 (330)
T ss_dssp EEECSSCCCSCCEEC---TTS-CEEEECTTCEEEEECT-TS---------CEEEEEECSSCCCSCCEECT-TCC-EEEEC
T ss_pred EeeCCCCccccceEc---CCC-eEEEecCCCCEEEECC-CC---------cEEEEEEcCCccccceEEcC-CCE-EEEEc
Confidence 222222223334444 455 4556777889999996 44 33233333344566666654 564 77788
Q ss_pred CCceEEEEeC
Q 025649 240 TSKVVKVYSI 249 (250)
Q Consensus 240 ~d~~i~vw~~ 249 (250)
.+|.+++...
T Consensus 313 ~~G~~~~~~~ 322 (330)
T 3hxj_A 313 RNGKFYALFN 322 (330)
T ss_dssp TTSCEEEEEC
T ss_pred CCCeEEEEec
Confidence 8999987653
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.85 E-value=2.6e-07 Score=73.57 Aligned_cols=194 Identities=10% Similarity=0.024 Sum_probs=125.8
Q ss_pred CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEec-C-CCcccCCCCCEEEEEe-------
Q 025649 32 WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI-P-DADMLDKTNKICVVAK------- 102 (250)
Q Consensus 32 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~~~~~l~~~~------- 102 (250)
||++++++...++.|.+-|+.+.++.+.+... .....+.+++ + | +++++++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip------------~g~~phg~~~~~~p------~~~~v~~~~~~~~p~~ 161 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP------------NAKGIHGLRPQKWP------RSNYVFCNGEDETPLV 161 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECS------------SCCSEEEEEECCSS------BCSEEEEEECSCEESS
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC------------CCCCCcceeeeecC------CCcEEEEecccccccC
Confidence 78866777777889999999999988866543 2245778886 4 7 888888884
Q ss_pred -----------CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec---------------------
Q 025649 103 -----------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS--------------------- 150 (250)
Q Consensus 103 -----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 150 (250)
.++.+.+.|..+.+...++... .....++++|+|++++........
T Consensus 162 ~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~ 239 (595)
T 1fwx_A 162 NDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA 239 (595)
T ss_dssp CSSSSTTCGGGEEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred CCCcccccccccCceEEEEECCCCeEEEEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecc
Confidence 3568999999998877776654 245778899999988843321100
Q ss_pred -------cCee--eeeeccccCc-------------cccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCccee--c
Q 025649 151 -------GGKR--LHLDYSVGGH-------------TAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQ--T 205 (250)
Q Consensus 151 -------~~~~--~~~~~~~~~h-------------~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~--~ 205 (250)
.... ...+..+... .....++.++ |||++++.++ .+.+|.++|+.+.+... .
T Consensus 240 ~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~s---PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~ 316 (595)
T 1fwx_A 240 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMA---PDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN 316 (595)
T ss_dssp HHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEEC---TTSSEEEEECTTSSBEEEEEGGGHHHHHHSC
T ss_pred ceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEc---CCCCEEEEeCCCCCeEEEEECcccccccccc
Confidence 0000 0001111111 1123567888 8999877665 58899999999752110 0
Q ss_pred ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 206 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
......+.....-......++|+| +|...++.-.|+.|.+||+
T Consensus 317 l~~~~~v~~~v~vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 317 ADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp CCGGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEH
T ss_pred cCcccceEEEcCCCCCcceEEECC-CCeEEEEEecCCcEEEEEh
Confidence 000012223334456788999998 7854556778999999986
No 236
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.80 E-value=7.3e-07 Score=69.04 Aligned_cols=186 Identities=12% Similarity=-0.031 Sum_probs=110.7
Q ss_pred CCCCeEEEEecCC----CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe----
Q 025649 31 PWKPWEVISGGLD----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK---- 102 (250)
Q Consensus 31 ~~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~---- 102 (250)
++++..+++...+ +.|.+.|+.+++.+..+..+ ..+ .++++| ++++++++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-------------~~P--gia~Sp------Dgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-------------FLP--HPVAAE------DGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-------------SSC--EEEECT------TSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-------------CCC--ceEECC------CCCEEEEEecccc
Confidence 4566445555544 79999999999999999876 233 799998 999888876
Q ss_pred ------CCCeEEEEeCCCceeEeeccCC------CCCCccceeecccceeEEEeeee-----eeccCeeeeeeccccCcc
Q 025649 103 ------GDGVVDVINIESELNISRSKST------TKPLKGSQSTSKVNIRDAEMEIL-----DQSGGKRLHLDYSVGGHT 165 (250)
Q Consensus 103 ------~d~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~h~ 165 (250)
.++.|.++|..+++....+... .......+.++|||++++..... ...+....+.+.++....
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g 220 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD 220 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC
Confidence 4679999999998887766543 12356789999999998843211 111222333333333211
Q ss_pred ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCce-eEEEecCCCCCeEEEeeCCceE
Q 025649 166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV-NWLCTTPTESENLVVCDTSKVV 244 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~d~~i 244 (250)
+....| ...+.+++.+.||.+.+.+..+++..... . ..+.....++ ..+.+.+ ++..++..+..+.+
T Consensus 221 ----~~~~~p--~g~~~~v~~~~dG~~~~V~~~~~~v~~~~---~--~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V 288 (426)
T 3c75_H 221 ----CYHIFP--ASPTVFYMNCRDGSLARVDFADGETKVTN---T--EVFHTEDELLINHPAFSL-RSGRLVWPTYTGKI 288 (426)
T ss_dssp ----EEEEEE--EETTEEEEEETTSSEEEEECCTTCCEEEE---C--CCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEE
T ss_pred ----ceeecc--CCCcEEEEEcCCCCEEEEECCCCcEEEEe---e--eeeccCCCceeeEeeecC-CCCEEEEEeCCCcE
Confidence 122331 12356666777888888888554211000 0 0011111111 1234565 55555555667778
Q ss_pred EEEeC
Q 025649 245 KVYSI 249 (250)
Q Consensus 245 ~vw~~ 249 (250)
.+.|+
T Consensus 289 ~ViD~ 293 (426)
T 3c75_H 289 FQADL 293 (426)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 77774
No 237
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.80 E-value=1.2e-05 Score=57.78 Aligned_cols=203 Identities=10% Similarity=0.065 Sum_probs=126.0
Q ss_pred eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649 15 SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 94 (250)
Q Consensus 15 ~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (250)
.+. +-.+.+..++++|++..++++...++.|...|+. ++.++.+.++ .......+++.+ +
T Consensus 21 ~l~-g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~------------g~~D~EGIa~~~------~ 80 (255)
T 3qqz_A 21 EIA-GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD------------FVKDLETIEYIG------D 80 (255)
T ss_dssp ECT-TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS------------SCSSEEEEEECS------T
T ss_pred ECC-CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC------------CCCChHHeEEeC------C
Confidence 455 6667899999999877466667778999999997 8888877654 124567788876 7
Q ss_pred CCEEEEEeCCCeEEEEeCCCcee---Eeecc-----CCCCCCccceeecccceeEEEeeeeee------cc---Ceeeee
Q 025649 95 NKICVVAKGDGVVDVINIESELN---ISRSK-----STTKPLKGSQSTSKVNIRDAEMEILDQ------SG---GKRLHL 157 (250)
Q Consensus 95 ~~~l~~~~~d~~i~~~d~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~ 157 (250)
+.++++.-.++.+.++++..... ..... .........++++|+++.+..+.-.+. .. ......
T Consensus 81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i 160 (255)
T 3qqz_A 81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHI 160 (255)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEE
T ss_pred CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceee
Confidence 77767766778899998765332 12211 123455688999999866653222111 10 001111
Q ss_pred ecc--c--cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc------CCceeEEEe
Q 025649 158 DYS--V--GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL------NKKVNWLCT 227 (250)
Q Consensus 158 ~~~--~--~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~ 227 (250)
... + ..+...+.+++++| ..+++++.....+.+..+|.... .. ..+....+. -...-.|++
T Consensus 161 ~~~~~~~~~~~~~d~S~l~~dp--~tg~lliLS~~s~~L~~~d~~g~-~~------~~~~L~~g~~~l~~~~~qpEGia~ 231 (255)
T 3qqz_A 161 SKDKALQRQFTLDDVSGAEFNQ--QKNTLLVLSHESRALQEVTLVGE-VI------GEMSLTKGSRGLSHNIKQAEGVAM 231 (255)
T ss_dssp EECHHHHHTCCSSCCCEEEEET--TTTEEEEEETTTTEEEEECTTCC-EE------EEEECSTTGGGCSSCCCSEEEEEE
T ss_pred ecchhhccccccCCceeEEEcC--CCCeEEEEECCCCeEEEEcCCCC-EE------EEEEcCCccCCcccccCCCCeeEE
Confidence 100 0 11234578999996 56778888888899999998764 11 111111111 124678899
Q ss_pred cCCCCCeEEEeeCCceEEEEe
Q 025649 228 TPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 228 ~~~~~~~l~s~~~d~~i~vw~ 248 (250)
.+ +|. |+..+.-+.++.+.
T Consensus 232 d~-~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 232 DA-SGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp CT-TCC-EEEEETTTEEEEEE
T ss_pred CC-CCC-EEEEcCCceEEEEE
Confidence 87 787 44446566665553
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.76 E-value=1.2e-06 Score=65.66 Aligned_cols=173 Identities=10% Similarity=-0.022 Sum_probs=95.0
Q ss_pred EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc
Q 025649 36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 115 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 115 (250)
.|..++.++.|..+|.. ++.......+ ...+.++...+ ++. +..++.++.|..+|.. +
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~-------------~~~~~~~~~~~------~g~-l~vgt~~~~l~~~d~~-g 166 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTEKWRFKTK-------------KAIYATPIVSE------DGT-IYVGSNDNYLYAINPD-G 166 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCEEEEEECS-------------SCCCSCCEECT------TSC-EEEECTTSEEEEECTT-S
T ss_pred EEEEEecCCEEEEEcCC-CCEEEEEcCC-------------CceeeeeEEcC------CCE-EEEEcCCCEEEEECCC-C
Confidence 46666667777777776 6554444322 11233333333 454 6667788999999998 6
Q ss_pred eeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEE
Q 025649 116 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195 (250)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iw 195 (250)
+........ ...+..+...+++...+..+.....+ ...+.+..+......+.++... ++|.+ ..++.++.|..+
T Consensus 167 ~~~~~~~~~-~~~~~~~~~d~~g~l~v~t~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~---~~g~l-~v~t~~~gl~~~ 240 (330)
T 3hxj_A 167 TEKWRFKTN-DAITSAASIGKDGTIYFGSDKVYAIN-PDGTEKWNFYAGYWTVTRPAIS---EDGTI-YVTSLDGHLYAI 240 (330)
T ss_dssp CEEEEEECS-SCCCSCCEECTTCCEEEESSSEEEEC-TTSCEEEEECCSSCCCSCCEEC---TTSCE-EEEETTTEEEEE
T ss_pred CEeEEEecC-CCceeeeEEcCCCEEEEEeCEEEEEC-CCCcEEEEEccCCcceeceEEC---CCCeE-EEEcCCCeEEEE
Confidence 665544433 34566777777777665321111111 1112222333333556677777 66654 445667888888
Q ss_pred ecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 196 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 196 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
|... ..+.........+..+...+ ++ .|..++.+|.|..+|
T Consensus 241 ~~~g----------~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 241 NPDG----------TEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp CTTS----------CEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEEC
T ss_pred CCCC----------CEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEEC
Confidence 7533 22222222223333444432 44 467777787777776
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.72 E-value=1.7e-06 Score=71.45 Aligned_cols=113 Identities=9% Similarity=-0.011 Sum_probs=67.8
Q ss_pred cEEEEcccceeeeeeccCC-C----CCeeeEEEcCCCCeEEEEecC------CCeEEEEEccCCCCccceecCCCCCCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGH-S----SICSSVQFIPWKPWEVISGGL------DSKLVMWDFSKGRPNKIVNFGLPENNGN 70 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h-~----~~v~~l~~~~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 70 (250)
|..+|.++|+.+.++. .+ . ..+.+--...++ .++.++. +|.|+.+|..+|+.+..+....+.....
T Consensus 140 l~alD~~tG~~~W~~~-~~~~~~~~~~~~~~p~v~~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~ 216 (677)
T 1kb0_A 140 LIALDAATGKEVWHQN-TFEGQKGSLTITGAPRVFKG--KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKP 216 (677)
T ss_dssp EEEEETTTCCEEEEEE-TTTTCCSSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC
T ss_pred EEEEECCCCCEEeeec-CCcCcCcCcccccCcEEECC--EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccc
Confidence 5678999999998887 44 1 122211111133 4555443 7999999999999988887542211000
Q ss_pred C---------------Ccc----cCCCceeEEecCCCcccCCCCCEEEEEeCCC-------------------eEEEEeC
Q 025649 71 A---------------GQC----YNPAFVHAIAIPDADMLDKTNKICVVAKGDG-------------------VVDVINI 112 (250)
Q Consensus 71 ~---------------~~~----~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~-------------------~i~~~d~ 112 (250)
. ... ........+++.| ++.+++.+..++ .|..+|.
T Consensus 217 ~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~------~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~ 290 (677)
T 1kb0_A 217 FEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA------ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP 290 (677)
T ss_dssp CSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET------TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred ccccccccccccccccCceeEeCCCcccccceeEcC------CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEEC
Confidence 0 000 0011112455555 778888887664 5999999
Q ss_pred CCceeEeeccC
Q 025649 113 ESELNISRSKS 123 (250)
Q Consensus 113 ~~~~~~~~~~~ 123 (250)
++++.......
T Consensus 291 ~TG~~~W~~~~ 301 (677)
T 1kb0_A 291 DTGKYKWHYQE 301 (677)
T ss_dssp TTCCEEEEEES
T ss_pred CCCCEEEEEec
Confidence 99998876554
No 240
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.71 E-value=2.4e-06 Score=65.37 Aligned_cols=210 Identities=8% Similarity=-0.000 Sum_probs=111.7
Q ss_pred cEEEEcccceeeeeeccCCCCCe-----eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSIC-----SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v-----~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (250)
|..+|.++|+.+..+. ...... ...... +. .++.++.++.|..+|..+++.+.......+.... .
T Consensus 155 l~~~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~------~ 224 (376)
T 3q7m_A 155 LQALNEADGAVKWTVN-LDMPSLSLRGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGST------E 224 (376)
T ss_dssp EEEEETTTCCEEEEEE-CCC-----CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC------------
T ss_pred EEEEECCCCcEEEEEe-CCCCceeecCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCc------c
Confidence 5678888888887776 322111 122222 33 6788888999999999999988777643110000 0
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe-----eeeeecc
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM-----EILDQSG 151 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 151 (250)
...+..+...|. ..+..+..++.++.+..+|.++++........ ....+... ++..++.. ...+...
T Consensus 225 ~~~~~~~~~~p~----~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~---~~~~~~~~-~~~l~~~~~~g~l~~~d~~t 296 (376)
T 3q7m_A 225 IDRLSDVDTTPV----VVNGVVFALAYNGNLTALDLRSGQIMWKRELG---SVNDFIVD-GNRIYLVDQNDRVMALTIDG 296 (376)
T ss_dssp -----CCCCCCE----EETTEEEEECTTSCEEEEETTTCCEEEEECCC---CEEEEEEE-TTEEEEEETTCCEEEEETTT
T ss_pred cccccccCCCcE----EECCEEEEEecCcEEEEEECCCCcEEeeccCC---CCCCceEE-CCEEEEEcCCCeEEEEECCC
Confidence 000001111221 13567777888999999999998877654432 12222222 22222211 1122111
Q ss_pred Ceeeeeecccc-CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeE-EEecC
Q 025649 152 GKRLHLDYSVG-GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTP 229 (250)
Q Consensus 152 ~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~ 229 (250)
. +.+.... .....+...... +..++.++.+|.|..+|.++++ .+.........+.. ....
T Consensus 297 G---~~~w~~~~~~~~~~~~~~~~-----~~~l~v~~~~g~l~~~d~~tG~---------~~~~~~~~~~~~~~~~~~~- 358 (376)
T 3q7m_A 297 G---VTLWTQSDLLHRLLTSPVLY-----NGNLVVGDSEGYLHWINVEDGR---------FVAQQKVDSSGFQTEPVAA- 358 (376)
T ss_dssp C---CEEEEECTTTTSCCCCCEEE-----TTEEEEECTTSEEEEEETTTCC---------EEEEEECCTTCBCSCCEEE-
T ss_pred C---cEEEeecccCCCcccCCEEE-----CCEEEEEeCCCeEEEEECCCCc---------EEEEEecCCCcceeCCEEE-
Confidence 1 2222222 111112222222 3577788889999999999983 33333332233322 2221
Q ss_pred CCCCeEEEeeCCceEEEEeC
Q 025649 230 TESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 230 ~~~~~l~s~~~d~~i~vw~~ 249 (250)
+ ..|+.++.+|.|..|+.
T Consensus 359 -~-~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 359 -D-GKLLIQAKDGTVYSITR 376 (376)
T ss_dssp -T-TEEEEEBTTSCEEEEEC
T ss_pred -C-CEEEEEeCCCEEEEEeC
Confidence 3 36888899999999873
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.70 E-value=1e-06 Score=63.69 Aligned_cols=170 Identities=8% Similarity=-0.062 Sum_probs=108.1
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|+++|+.+++.+..+..+.......+++. +..+.++.-.++.+.++|..+.+.+.++..+ .+.
T Consensus 45 ~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g------------~~~-- 108 (266)
T 2iwa_A 45 SVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ------------MKD-- 108 (266)
T ss_dssp EEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECC------------SSS--
T ss_pred EEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECC------------CCC--
Confidence 378899999999988762222223355555 4436677778899999999999988888633 011
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC----CCccceeecccceeEEE------eeeeeec
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----PLKGSQSTSKVNIRDAE------MEILDQS 150 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~ 150 (250)
...+++ +++.++++..++.|.++|..+.+....+..... .....+.+. +|..++. +...|..
T Consensus 109 -g~glt~------Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~ 180 (266)
T 2iwa_A 109 -GWGLAT------DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAK 180 (266)
T ss_dssp -CCEEEE------CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETT
T ss_pred -eEEEEE------CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECC
Confidence 122444 677777777889999999999877766554321 234566777 6654442 1122222
Q ss_pred cCeeeeeeccccC-------------ccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCC
Q 025649 151 GGKRLHLDYSVGG-------------HTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 151 ~~~~~~~~~~~~~-------------h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~ 200 (250)
..+.+..+.. .....+.++|+ |+++ +++++...+.+...++...
T Consensus 181 ---tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~---~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 181 ---DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD---QENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ---TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE---TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ---CCcEEEEEECCCcccccccccccccCceEEEEEc---CCCCEEEEECCCCCeEEEEEEecc
Confidence 2222222221 11356899999 6764 6667777889999988764
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.69 E-value=2.9e-05 Score=56.41 Aligned_cols=191 Identities=6% Similarity=-0.083 Sum_probs=108.0
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE-EE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VV 100 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l-~~ 100 (250)
..+..+++++++..++++-..++.|..+++........+..+ ......+++.| ++..| ++
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-------------~~~p~~ia~d~------~~~~lyv~ 96 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-------------LGSPEGIALDH------LGRTIFWT 96 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-------------CCCEEEEEEET------TTTEEEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC-------------CCCccEEEEEe------cCCeEEEE
Confidence 456799999976646677777899999999755432222211 23567888887 55544 45
Q ss_pred EeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeee--eec------cCeeeeeeccccCccccEEEEE
Q 025649 101 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL--DQS------GGKRLHLDYSVGGHTAAASCVA 172 (250)
Q Consensus 101 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~h~~~v~~~~ 172 (250)
-...+.|.++++........... .......++++|++..+...... ... +....+.+. .........++
T Consensus 97 d~~~~~I~~~~~~g~~~~~~~~~-~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~--~~~~~~P~gia 173 (267)
T 1npe_A 97 DSQLDRIEVAKMDGTQRRVLFDT-GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA--QDNLGLPNGLT 173 (267)
T ss_dssp ETTTTEEEEEETTSCSCEEEECS-SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE--CTTCSCEEEEE
T ss_pred ECCCCEEEEEEcCCCCEEEEEEC-CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE--ECCCCCCcEEE
Confidence 45678999999875432222211 12456789999965444312111 000 111111111 11224568899
Q ss_pred eecCCCCCcE-EEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 173 FSMFGERGKY-LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 173 ~~p~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
++ +++.. +++-...+.|.++|..... ..... ........++.. ++.++++...++.|..+|.
T Consensus 174 ~d---~~~~~lyv~d~~~~~I~~~~~~g~~---------~~~~~-~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 174 FD---AFSSQLCWVDAGTHRAECLNPAQPG---------RRKVL-EGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp EE---TTTTEEEEEETTTTEEEEEETTEEE---------EEEEE-ECCCSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred Ec---CCCCEEEEEECCCCEEEEEecCCCc---------eEEEe-cCCCCceEEEEe--CCEEEEEECCCCeEEEEeC
Confidence 99 76554 4555567899999997642 11111 122334566553 3434444445678888875
No 243
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.68 E-value=2.8e-06 Score=64.66 Aligned_cols=189 Identities=7% Similarity=-0.073 Sum_probs=103.5
Q ss_pred CcEEEEcccceeeeeeccCC-------CCCeeeEEEcCCCCeEEEEec-C-CCeEEE--EEccCCCCccceecCCCCC--
Q 025649 1 MWQIIDIRQHCLYKSLRAGH-------SSICSSVQFIPWKPWEVISGG-L-DSKLVM--WDFSKGRPNKIVNFGLPEN-- 67 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h-------~~~v~~l~~~~~~~~~l~s~s-~-dg~v~i--wd~~~~~~~~~~~~~~~~~-- 67 (250)
+|.+||+.+++.+.++. .+ ......++++|||+ +++.+. . +..|.+ +|+.+ +..+..+....
T Consensus 97 ~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~ 171 (368)
T 1mda_H 97 YVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIH 171 (368)
T ss_dssp EEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSS-CEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCE
T ss_pred EEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCC-EEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEc
Confidence 37899999999999987 33 13467999999999 455554 2 467888 99866 33332210000
Q ss_pred -CC-CCCccc-CCCceeEEec----------------------CCCcccCCCCCEEEEEeCCCeEEEEeCCCce--eEee
Q 025649 68 -NG-NAGQCY-NPAFVHAIAI----------------------PDADMLDKTNKICVVAKGDGVVDVINIESEL--NISR 120 (250)
Q Consensus 68 -~~-~~~~~~-~~~~v~~~~~----------------------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~ 120 (250)
.. ...... ....+..+.. .|.. .+++..++..+. +.+.+.|+.++. ....
T Consensus 172 p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~--~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~ 248 (368)
T 1mda_H 172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ--ANYPGMLVWAVA-SSILQGDIPAAGATMKAA 248 (368)
T ss_dssp EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE--ETTTTEEEECBS-SCCEEEECCSSCCEEECC
T ss_pred cCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccc--cccCCEEEEEcC-CEEEEEECCCCcceEEEE
Confidence 00 000000 0000000000 0100 113444444455 888899986532 2221
Q ss_pred ccCCC---------CCCccceeecccceeEEEeee------------eeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649 121 SKSTT---------KPLKGSQSTSKVNIRDAEMEI------------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 179 (250)
Q Consensus 121 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 179 (250)
+.... ......+.++|+++.++.... ....+....+.+..+.... ....++|+ |+
T Consensus 249 ~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s---~D 324 (368)
T 1mda_H 249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAA---QD 324 (368)
T ss_dssp CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEEC---CS
T ss_pred EEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEEC---CC
Confidence 21110 012223789999887773211 0122234444555555433 57899999 88
Q ss_pred Cc-EEEEee-CCCeEEEEecCCCc
Q 025649 180 GK-YLISGG-NDKLVKVWDCSRFQ 201 (250)
Q Consensus 180 ~~-~l~s~~-~d~~i~iwd~~~~~ 201 (250)
|+ ++++.. .++.|.++|+.+++
T Consensus 325 g~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 325 GASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCEEEEEccCCCCeEEEEECCCCc
Confidence 87 566666 59999999999983
No 244
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.68 E-value=2e-05 Score=60.22 Aligned_cols=204 Identities=12% Similarity=0.022 Sum_probs=110.4
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|..+|.++|+.+.... ............ ++ .++.++.++.|..+|..+|+.+....... .+.
T Consensus 115 l~a~d~~tG~~~W~~~-~~~~~~~~p~~~-~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~--------------~~~ 176 (376)
T 3q7m_A 115 VYALNTSDGTVAWQTK-VAGEALSRPVVS-DG--LVLIHTSNGQLQALNEADGAVKWTVNLDM--------------PSL 176 (376)
T ss_dssp EEEEETTTCCEEEEEE-CSSCCCSCCEEE-TT--EEEEECTTSEEEEEETTTCCEEEEEECCC-----------------
T ss_pred EEEEECCCCCEEEEEe-CCCceEcCCEEE-CC--EEEEEcCCCeEEEEECCCCcEEEEEeCCC--------------Cce
Confidence 5678888898887776 333222222222 33 67888889999999999999888776431 111
Q ss_pred EE--ecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCC---------ccceeecccceeEEEe-----e
Q 025649 82 AI--AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL---------KGSQSTSKVNIRDAEM-----E 145 (250)
Q Consensus 82 ~~--~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-----~ 145 (250)
.. ...|. ..+..++++..++.+..+|..+++............ +.......++..++.. .
T Consensus 177 ~~~~~~~~~----~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~ 252 (376)
T 3q7m_A 177 SLRGESAPT----TAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLT 252 (376)
T ss_dssp --CCCCCCE----EETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEE
T ss_pred eecCCCCcE----EECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEE
Confidence 00 01111 034567788889999999999988776554321100 1011111123322211 1
Q ss_pred eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee-ccCCceeE
Q 025649 146 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI-NLNKKVNW 224 (250)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 224 (250)
..+.. ..+.+.... ......+.. ++..+..++.++.|..+|..+++. +-... ........
T Consensus 253 ~~d~~---tG~~~w~~~--~~~~~~~~~-----~~~~l~~~~~~g~l~~~d~~tG~~---------~w~~~~~~~~~~~~ 313 (376)
T 3q7m_A 253 ALDLR---SGQIMWKRE--LGSVNDFIV-----DGNRIYLVDQNDRVMALTIDGGVT---------LWTQSDLLHRLLTS 313 (376)
T ss_dssp EEETT---TCCEEEEEC--CCCEEEEEE-----ETTEEEEEETTCCEEEEETTTCCE---------EEEECTTTTSCCCC
T ss_pred EEECC---CCcEEeecc--CCCCCCceE-----ECCEEEEEcCCCeEEEEECCCCcE---------EEeecccCCCcccC
Confidence 11211 112222221 122334443 345677777899999999999843 22222 11112222
Q ss_pred EEecCCCCCeEEEeeCCceEEEEeC
Q 025649 225 LCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 225 ~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.... +..|+.++.+|.+.++|.
T Consensus 314 ~~~~---~~~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 314 PVLY---NGNLVVGDSEGYLHWINV 335 (376)
T ss_dssp CEEE---TTEEEEECTTSEEEEEET
T ss_pred CEEE---CCEEEEEeCCCeEEEEEC
Confidence 2232 346788888888888875
No 245
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.65 E-value=3.2e-06 Score=69.93 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=67.3
Q ss_pred cEEEEcccceeeeeeccC-CCCCeeeEEEcC---CCCeEEEEec------CCCeEEEEEccCCCCccceecCCCCCCCC-
Q 025649 2 WQIIDIRQHCLYKSLRAG-HSSICSSVQFIP---WKPWEVISGG------LDSKLVMWDFSKGRPNKIVNFGLPENNGN- 70 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~-h~~~v~~l~~~~---~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~- 70 (250)
|..+|.++|+.+..+... +......+..+| ++. ++.++ .+|.|..||.++|+.+..+..........
T Consensus 133 l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 210 (689)
T 1yiq_A 133 LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP 210 (689)
T ss_dssp EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence 567899999998887722 221112222223 443 44443 37899999999999988776321000000
Q ss_pred CC--c-----c----------cCCCceeEEecCCCcccCCCCCEEEEEeCCCe-------------------EEEEeCCC
Q 025649 71 AG--Q-----C----------YNPAFVHAIAIPDADMLDKTNKICVVAKGDGV-------------------VDVINIES 114 (250)
Q Consensus 71 ~~--~-----~----------~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~-------------------i~~~d~~~ 114 (250)
.. . . ........+++.| +..+++.+..++. |..+|.++
T Consensus 211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~------~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T 284 (689)
T 1yiq_A 211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP------ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT 284 (689)
T ss_dssp CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET------TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT
T ss_pred ccccccccccccCCceeeecCCCCccccceeEcC------CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC
Confidence 00 0 0 0001112355555 7788888887764 99999999
Q ss_pred ceeEeeccC
Q 025649 115 ELNISRSKS 123 (250)
Q Consensus 115 ~~~~~~~~~ 123 (250)
++.......
T Consensus 285 G~~~W~~~~ 293 (689)
T 1yiq_A 285 GEYVWHYQT 293 (689)
T ss_dssp CCEEEEEES
T ss_pred CceeEeeec
Confidence 998876654
No 246
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.60 E-value=5.9e-06 Score=58.61 Aligned_cols=98 Identities=8% Similarity=0.137 Sum_probs=69.6
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|+.+|+++++.+..+. -. .........+.+..+.+..-.++.+.++|..+.+.+.++..+ ..-.
T Consensus 45 v~~vD~~tgkv~~~~~-l~-~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~--------------~~Gw 108 (243)
T 3mbr_X 45 VRKVDLETGRILQRAE-VP-PPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP--------------GEGW 108 (243)
T ss_dssp EEEEETTTCCEEEEEE-CC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS--------------SCCC
T ss_pred EEEEECCCCCEEEEEe-CC-CCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC--------------CCce
Confidence 7889999999998887 32 233333333334436666778899999999999999999854 1223
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 123 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 123 (250)
.++ + +++.|+.+..++.|.++|..+.+....+..
T Consensus 109 glt--~------dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 109 ALT--S------DDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp EEE--E------CSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EEe--e------CCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 443 3 566677777789999999999877666544
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.58 E-value=5.9e-06 Score=59.14 Aligned_cols=117 Identities=13% Similarity=0.077 Sum_probs=78.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 80 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (250)
+|+.+|+++++.+..+. -. .........+++..+.+..-.++.+.++|..+.+.+.++..+ ..-
T Consensus 66 ~v~~vD~~Tgkv~~~~~-l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~--------------~eG 129 (262)
T 3nol_A 66 SIRKVDIESGKTLQQIE-LG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD--------------GEG 129 (262)
T ss_dssp EEEEECTTTCCEEEEEE-CC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS--------------SCC
T ss_pred eEEEEECCCCcEEEEEe-cC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC--------------CCc
Confidence 37889999999998887 32 334343333345435666667899999999999999999854 111
Q ss_pred eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC----CCccceeecccceeEE
Q 025649 81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----PLKGSQSTSKVNIRDA 142 (250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 142 (250)
..++ + +++.|+.+..++.|.++|..+.+....+..... ..+..+.+. +|+..+
T Consensus 130 ~glt--~------dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya 186 (262)
T 3nol_A 130 WGLT--H------NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA 186 (262)
T ss_dssp CCEE--E------CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred eEEe--c------CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence 2333 3 677777777788999999999887766554311 223346665 665444
No 248
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.56 E-value=2.5e-05 Score=65.38 Aligned_cols=187 Identities=7% Similarity=-0.064 Sum_probs=100.9
Q ss_pred CeeeEEEc-CCCCeEEE-EecCC----CeEEEEEccCC-CCccc-eecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649 23 ICSSVQFI-PWKPWEVI-SGGLD----SKLVMWDFSKG-RPNKI-VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 94 (250)
Q Consensus 23 ~v~~l~~~-~~~~~~l~-s~s~d----g~v~iwd~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (250)
.+...+|| |||+ +|+ +.+.+ .+|+++|+.++ +.+.. +. ....++.|+| +
T Consensus 175 ~~~~~~~S~PDG~-~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~----------------~~~~~~~Wsp------D 231 (751)
T 2xe4_A 175 DVMEVKPAPPEHD-LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS----------------GTNGEIVWGP------D 231 (751)
T ss_dssp EEEEEEECTTTTC-EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE----------------EECSCCEECS------S
T ss_pred EEeeeEecCCCCC-EEEEEEeCCCCceEEEEEEECCCCCEeCCcccc----------------CceeeEEEec------C
Confidence 67889999 9999 555 33323 35999999988 53211 11 1234678888 8
Q ss_pred CCEEEEEeCC-----CeEEEEeCCCceeE--eeccCCCCCCccceeecccceeEEEeeeeeecc-------Ceee--ee-
Q 025649 95 NKICVVAKGD-----GVVDVINIESELNI--SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG-------GKRL--HL- 157 (250)
Q Consensus 95 ~~~l~~~~~d-----~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~- 157 (250)
++.|+....| ..|.++++.++... .............+.++|||++++... ..... .... +.
T Consensus 232 g~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~-~~~~~~~l~~~d~~~~~~~~~ 310 (751)
T 2xe4_A 232 HTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS-QSPETAEVHLLDLRKGNAHNT 310 (751)
T ss_dssp TTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE-ECSSCEEEEEEESSSCTTCCC
T ss_pred CCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe-cCCCCceEEEEECCCCCCCce
Confidence 8887777654 36888888875421 222222223456788999999988432 11110 0000 11
Q ss_pred -eccccCccccEEEEEeecCCCCCcEEEEeeCC----CeEEEEecCCCcceecccccceeee-eeccCC--ceeEEEecC
Q 025649 158 -DYSVGGHTAAASCVAFSMFGERGKYLISGGND----KLVKVWDCSRFQGVQTSINNDLLIK-NINLNK--KVNWLCTTP 229 (250)
Q Consensus 158 -~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~--~v~~~~~~~ 229 (250)
............++.|+ .++.+++....+ ..|..+|+.+.. .. .. +..+.. .+..+.+.
T Consensus 311 ~~~l~~~~~~~~~s~~~~---~g~~l~~~t~~~~a~~~~L~~~d~~~~~--------~~-~~~li~~~~~~~l~~~~~~- 377 (751)
T 2xe4_A 311 LEIVRPREKGVRYDVQMH---GTSHLVILTNEGGAVNHKLLIAPRGQPS--------DW-SHVLVDHSEDVFMESIAVR- 377 (751)
T ss_dssp EEESSCCCTTCCEEEEEE---TTTEEEEEECTTTCTTCEEEEEETTSTT--------CC-CCEEECCCSSEEEEEEEEC-
T ss_pred eEEeecCCCCceEEEeee---eCCEEEEEeCCCCCCCcEEEEEcCCCcc--------cc-eeeEECCCCCcEEEEEEEE-
Confidence 11112233444555555 444455554443 367777776421 11 11 222332 34445543
Q ss_pred CCCCeEEEeeCCceEEEE
Q 025649 230 TESENLVVCDTSKVVKVY 247 (250)
Q Consensus 230 ~~~~~l~s~~~d~~i~vw 247 (250)
.+.++++...++..+||
T Consensus 378 -~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 378 -SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp -SSEEEEEEEETTEEEEE
T ss_pred -CCEEEEEEEeCCEEEEE
Confidence 34456667777765554
No 249
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.54 E-value=0.00014 Score=55.95 Aligned_cols=213 Identities=6% Similarity=-0.088 Sum_probs=114.1
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|+..++...+....+. .......++|++.+..++++-...+.|..+++........+..+ .....
T Consensus 98 I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-------------~~~p~ 162 (386)
T 3v65_B 98 IRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-------------LESPG 162 (386)
T ss_dssp EEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS-------------CSCCC
T ss_pred ceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC-------------CCCcc
Confidence 4455555444433333 33457799999866646667677889999998755432222211 12335
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-eccC---eeeee
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-QSGG---KRLHL 157 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~ 157 (250)
.+++.+ ..+++.++-...+.|.+.++.......... ........++++|.+..+....... .... .....
T Consensus 163 glavd~-----~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 163 GLAVDW-----VHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp CEEEET-----TTTEEEEEETTTTEEEECBTTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred EEEEEe-----CCCeEEEEcCCCCeEEEEeCCCCceEEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 566665 245555666667889999887644332222 2224567888998665554221111 0000 00000
Q ss_pred eccc-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649 158 DYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 236 (250)
Q Consensus 158 ~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (250)
...+ .........++++| .++++.++-+..+.|..+|+.... ..............+++. ++.++.
T Consensus 237 ~~~~~~~~~~~PnGlavd~--~~~~lY~aD~~~~~I~~~d~dG~~---------~~~~~~~~~~~P~giav~--~~~ly~ 303 (386)
T 3v65_B 237 RRIIADTHLFWPNGLTIDY--AGRRMYWVDAKHHVIERANLDGSH---------RKAVISQGLPHPFAITVF--EDSLYW 303 (386)
T ss_dssp CEEEECSSCSCEEEEEEEG--GGTEEEEEETTTTEEEEECTTSCS---------CEEEECSSCSSEEEEEEE--TTEEEE
T ss_pred cEEEEECCCCCeeeEEEeC--CCCEEEEEECCCCEEEEEeCCCCe---------eEEEEECCCCCceEEEEE--CCEEEE
Confidence 0111 12233468899993 244555555667899999987532 111112223345667663 344555
Q ss_pred EeeCCceEEEEe
Q 025649 237 VCDTSKVVKVYS 248 (250)
Q Consensus 237 s~~~d~~i~vw~ 248 (250)
+-...+.|..++
T Consensus 304 td~~~~~V~~~~ 315 (386)
T 3v65_B 304 TDWHTKSINSAN 315 (386)
T ss_dssp EETTTTEEEEEE
T ss_pred eeCCCCeEEEEE
Confidence 555566776665
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.41 E-value=4e-05 Score=54.95 Aligned_cols=115 Identities=7% Similarity=-0.042 Sum_probs=77.3
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|+++|+++++.+..+- ....--..+++. +..+.+..-.++.+.+||..+.+.+.++..+ ..-.
T Consensus 77 v~~iD~~Tgkv~~~~l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~--------------~eGw 139 (268)
T 3nok_A 77 LRQLSLESAQPVWMER-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTRYS--------------GEGW 139 (268)
T ss_dssp EEECCSSCSSCSEEEE-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEECS--------------SCCC
T ss_pred EEEEECCCCcEEeEEC-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEeCC--------------Ccee
Confidence 6788999999887763 332222345554 3336666778999999999999999998854 1123
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC----CCccceeecccceeEE
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----PLKGSQSTSKVNIRDA 142 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 142 (250)
.++ + +++.|+.+..++.|.++|..+.+....+..... ..+..+.+. +|+.++
T Consensus 140 GLt--~------Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya 195 (268)
T 3nok_A 140 GLC--Y------WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA 195 (268)
T ss_dssp CEE--E------ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEe--c------CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence 333 3 677888877899999999999887766544321 233445555 665444
No 251
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.41 E-value=8.5e-05 Score=61.25 Aligned_cols=99 Identities=13% Similarity=0.034 Sum_probs=62.2
Q ss_pred cEEEEcccceee--eeeccCCCCCeeeEEEcCCCCeEEEEecC-CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~~--~~l~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+.+||+.+++.. ..+...+.....++++..++. +++.|+. +..+.+||..+.+....-... .+.
T Consensus 221 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~~yd~~t~~W~~~~~~~------------~~R 287 (656)
T 1k3i_A 221 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSDSWIPGPDMQ------------VAR 287 (656)
T ss_dssp EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGTEEEECCCCS------------SCC
T ss_pred EEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceEEecCcCCceeECCCCC------------ccc
Confidence 567888876643 233212334445678889998 7888874 568999999876432211111 122
Q ss_pred ceeEEecCCCcccCCCCCEEEEEe-CC-----CeEEEEeCCCceeEe
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAK-GD-----GVVDVINIESELNIS 119 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~-~d-----~~i~~~d~~~~~~~~ 119 (250)
.-++++..+ ++++++.|+ .+ ..+.+||..+++...
T Consensus 288 ~~~s~~~~~------dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 288 GYQSSATMS------DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328 (656)
T ss_dssp SSCEEEECT------TSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred cccceEEec------CCeEEEEeCcccCCcccccceEeCCCCCccee
Confidence 224455555 789999988 44 579999998876543
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.39 E-value=0.00013 Score=60.33 Aligned_cols=107 Identities=11% Similarity=0.029 Sum_probs=68.0
Q ss_pred cEEEEcccceeeeeeccC--CC----------------------------CCeeeEEEcCCCCeEEEEecCCC-------
Q 025649 2 WQIIDIRQHCLYKSLRAG--HS----------------------------SICSSVQFIPWKPWEVISGGLDS------- 44 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~--h~----------------------------~~v~~l~~~~~~~~~l~s~s~dg------- 44 (250)
|..+|.++|+.+.++... .. .....+++.|++. +++.++.++
T Consensus 180 v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~ 258 (668)
T 1kv9_A 180 VSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREV 258 (668)
T ss_dssp EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHH
T ss_pred EEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCC
Confidence 677899999988877511 00 0112478888877 787777766
Q ss_pred ------------eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC---EEEEEeCCCeEEE
Q 025649 45 ------------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK---ICVVAKGDGVVDV 109 (250)
Q Consensus 45 ------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~l~~~~~d~~i~~ 109 (250)
.|..+|.++|+.+..++....+.-.. . .........+.. +++ .++.++.+|.+.+
T Consensus 259 ~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~---~-~~~~~~~~d~~~------~G~~~~~v~~~~~~G~l~~ 328 (668)
T 1kv9_A 259 RSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF---T-ATQQITLAELNI------DGKPRKVLMQAPKNGFFYV 328 (668)
T ss_dssp HSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC---C-CCSCEEEEEEEE------TTEEEEEEEECCTTSEEEE
T ss_pred CCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc---c-CCCCcEEEEecc------CCcEEEEEEEECCCCEEEE
Confidence 49999999999988887431000000 0 001111111111 444 6889999999999
Q ss_pred EeCCCceeEe
Q 025649 110 INIESELNIS 119 (250)
Q Consensus 110 ~d~~~~~~~~ 119 (250)
+|..+++.+.
T Consensus 329 lD~~tG~~l~ 338 (668)
T 1kv9_A 329 LDRTNGKLIS 338 (668)
T ss_dssp EETTTCCEEE
T ss_pred EECCCCCEec
Confidence 9999998773
No 253
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00048 Score=53.73 Aligned_cols=119 Identities=5% Similarity=-0.056 Sum_probs=69.8
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC----eEEEEEccCCCCc--cceecCCCCCCCCCCccc
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS----KLVMWDFSKGRPN--KIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg----~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~ 75 (250)
|+.+|+++++...... .......|+|+++++.++++...++ .+...+ ..+... ..+.
T Consensus 161 I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~-------------- 223 (430)
T 3tc9_A 161 TRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITELT-------------- 223 (430)
T ss_dssp EEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEE--------------
T ss_pred EEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeec--------------
Confidence 5677777665543333 4456789999999984444443222 233333 333322 1221
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (250)
.....+.+++.| .++.++++-..++.|..++...+................++++|+|+++.
T Consensus 224 ~~~~p~giavdp-----~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 224 KGQNCNGAETHP-----INGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY 285 (430)
T ss_dssp ECSSCCCEEECT-----TTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred cCCCceEEEEeC-----CCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE
Confidence 112346677776 24566666667889999999876653322222224567899999998554
No 254
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.28 E-value=0.00059 Score=51.66 Aligned_cols=212 Identities=6% Similarity=-0.090 Sum_probs=112.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|+..++...+....+. .......++|++.+..++++-...+.|..+++........+..+ .....
T Consensus 55 I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-------------~~~p~ 119 (349)
T 3v64_C 55 IRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-------------LESPG 119 (349)
T ss_dssp EEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-------------CSCCC
T ss_pred eEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC-------------CCCcc
Confidence 3444554433333333 23346799999766646667677889999998765433322211 12345
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-eccCe---eeee
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-QSGGK---RLHL 157 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~ 157 (250)
.+++.+ ..+++.++-...+.|.+.++.......... ........++++|.+..+..+.... ..... ....
T Consensus 120 glavd~-----~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 120 GLAVDW-----VHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp EEEEET-----TTTEEEEEETTTTEEEEEETTSCSCEEEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred EEEEec-----CCCeEEEEcCCCCeEEEEcCCCCceEEEEe-CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 677765 145555666677899999987644332222 2224567889998655544221111 00000 0000
Q ss_pred eccc-cCccccEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649 158 DYSV-GGHTAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 158 ~~~~-~~h~~~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (250)
...+ ...-.....++++ ++ +++.++-+..+.|..+|+.... ........-.....+++. ++.++
T Consensus 194 ~~~~~~~~~~~PnGla~d---~~~~~lY~aD~~~~~I~~~~~dG~~---------~~~~~~~~~~~P~giav~--~~~ly 259 (349)
T 3v64_C 194 RRIIADTHLFWPNGLTID---YAGRRMYWVDAKHHVIERANLDGSH---------RKAVISQGLPHPFAITVF--EDSLY 259 (349)
T ss_dssp CEESCCSSCSCEEEEEEE---TTTTEEEEEETTTTEEEEEETTSCS---------CEEEECSSCSSEEEEEEE--TTEEE
T ss_pred cEEEEECCCCCcceEEEe---CCCCEEEEEECCCCEEEEEeCCCCc---------eEEEEeCCCCCceEEEEE--CCEEE
Confidence 1111 1223456899999 54 4555555667899999987532 111111223345666663 34444
Q ss_pred EEeeCCceEEEEe
Q 025649 236 VVCDTSKVVKVYS 248 (250)
Q Consensus 236 ~s~~~d~~i~vw~ 248 (250)
.+-...+.|..++
T Consensus 260 ~td~~~~~V~~~~ 272 (349)
T 3v64_C 260 WTDWHTKSINSAN 272 (349)
T ss_dssp EEETTTTEEEEEE
T ss_pred EecCCCCeEEEEE
Confidence 4544556666554
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.27 E-value=0.00057 Score=51.00 Aligned_cols=197 Identities=8% Similarity=-0.056 Sum_probs=102.9
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCC-----CC--CCcccCCCceeEEecCCCcccCCC
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENN-----GN--AGQCYNPAFVHAIAIPDADMLDKT 94 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~v~~~~~~~~~~~~~~ 94 (250)
....++++.+++. ++.++..++.|..||..+++. ..+........ .. ...........++++.+ +
T Consensus 19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~------~ 90 (322)
T 2fp8_A 19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL------Q 90 (322)
T ss_dssp SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET------T
T ss_pred CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcC------C
Confidence 4567899999987 788888899999999875442 22221100000 00 00000012457788774 3
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeEeeccC---CCCCCccceeecc-cceeEEEeeeee----------------ec----
Q 025649 95 NKICVVAKGDGVVDVINIESELNISRSKS---TTKPLKGSQSTSK-VNIRDAEMEILD----------------QS---- 150 (250)
Q Consensus 95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~---- 150 (250)
+..|.++...+.|..+|..++........ ........+++.+ +|...++..... ..
T Consensus 91 ~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 91 NNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp TTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred CCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 44555555555688899876543221111 1113456789999 887776432100 00
Q ss_pred cCeeeeeeccccCccccEEEEEeecCCCCCcEEE-EeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649 151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 229 (250)
Q Consensus 151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 229 (250)
+....+ +..+.........++++ ++|++|. +-+..+.|..|++...... ..+.+. ...+ ...+++.+
T Consensus 171 d~~~~~-~~~~~~~~~~p~gia~~---~dg~~lyv~d~~~~~I~~~~~~~~~~~----~~~~~~---~~~g-P~gi~~d~ 238 (322)
T 2fp8_A 171 DPSTKE-TTLLLKELHVPGGAEVS---ADSSFVLVAEFLSHQIVKYWLEGPKKG----TAEVLV---KIPN-PGNIKRNA 238 (322)
T ss_dssp ETTTTE-EEEEEEEESCCCEEEEC---TTSSEEEEEEGGGTEEEEEESSSTTTT----CEEEEE---ECSS-EEEEEECT
T ss_pred eCCCCE-EEEeccCCccCcceEEC---CCCCEEEEEeCCCCeEEEEECCCCcCC----ccceEE---eCCC-CCCeEECC
Confidence 000000 00000111234568888 8887554 4456789999998753110 001111 1223 67788876
Q ss_pred CCCCeEEEee
Q 025649 230 TESENLVVCD 239 (250)
Q Consensus 230 ~~~~~l~s~~ 239 (250)
+|.+.++..
T Consensus 239 -~G~l~va~~ 247 (322)
T 2fp8_A 239 -DGHFWVSSS 247 (322)
T ss_dssp -TSCEEEEEE
T ss_pred -CCCEEEEec
Confidence 777655543
No 256
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.26 E-value=0.00035 Score=57.72 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=62.5
Q ss_pred cEEEEcccceeeeeeccCCCCC----------e-eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSI----------C-SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN 70 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~----------v-~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 70 (250)
|.-+|.++|+.+.++. ..... + ..+++ .+. .++.++.|+.|..+|..+|+.+..+....
T Consensus 78 v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~-~v~v~~~dg~l~alD~~tG~~~W~~~~~~------ 147 (668)
T 1kv9_A 78 VIAVDAASGKELWRYD-PEVAKVKARTSCCDAVNRGVAL--WGD-KVYVGTLDGRLIALDAKTGKAIWSQQTTD------ 147 (668)
T ss_dssp EEEEETTTCCEEEEEC-CCCCGGGGGGCTTCSCCCCCEE--EBT-EEEEECTTSEEEEEETTTCCEEEEEECSC------
T ss_pred EEEEECCCChhceEEC-CCCCccccccccccCCccceEE--ECC-EEEEEcCCCEEEEEECCCCCEeeeeccCC------
Confidence 4567888898888776 32211 0 12233 234 68888899999999999999988877431
Q ss_pred CCcccCCCceeEEecCCCcccCCCCCEEEEEeC------CCeEEEEeCCCceeEeecc
Q 025649 71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG------DGVVDVINIESELNISRSK 122 (250)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~ 122 (250)
......+..+|.. .+..++++.. +|.|..+|.++++.+....
T Consensus 148 ------~~~~~~~~~~P~v----~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 148 ------PAKPYSITGAPRV----VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp ------TTSSCBCCSCCEE----ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred ------CCCcceecCCCEE----ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 0001111112211 1334445433 5899999999999887654
No 257
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.26 E-value=9.3e-05 Score=61.36 Aligned_cols=214 Identities=6% Similarity=-0.091 Sum_probs=109.6
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC----CCCccceecCCCCCCCCCCcccCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK----GRPNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|+..++.+.+....+. . ...+..|+|++.+..++++-...+.|+.+++.. ......+..+ .
T Consensus 388 I~~id~~~~~~~~~~~-~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~-------------~ 452 (699)
T 1n7d_A 388 VRKMTLDRSEYTSLIP-N-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-------------I 452 (699)
T ss_dssp -CEECTTSCCEECCSC-C-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC-------------C
T ss_pred eEEEeCCCCcceeeec-c-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC-------------C
Confidence 4556665555444443 2 345678999987763555555678899998864 1111111101 1
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-ecc---Ce
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-QSG---GK 153 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~ 153 (250)
.....+++.+ ..++++++-...+.|.++++........+.. .......++++|.+..|+.+.... ..+ ..
T Consensus 453 ~~P~glavD~-----~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~-~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~ 526 (699)
T 1n7d_A 453 QAPDGLAVDW-----IHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 526 (699)
T ss_dssp --CCCEECCC-----SSSBCEECCTTTSCEEEEBSSSCCEEEECCC-SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred CCcceEEEEe-----eCCcEEEEeccCCeEEEEecCCCceEEEEeC-CCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence 2345677765 2455555556678999999886544333222 124567888998765554221100 000 00
Q ss_pred eeeeeccc-cCccccEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649 154 RLHLDYSV-GGHTAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 231 (250)
Q Consensus 154 ~~~~~~~~-~~h~~~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 231 (250)
.......+ ...-.....|+++ ++ ++++++-+..+.|..+|+..... ..+......-.....|++.. +
T Consensus 527 dG~~~~~l~~~~l~~PnGlavd---~~~~~LY~aD~~~~~I~~~d~dG~~~-------~~~~~~~~~~~~P~glavd~-~ 595 (699)
T 1n7d_A 527 NGVDIYSLVTENIQWPNGITLD---LLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFE-D 595 (699)
T ss_dssp SSCCCCEESCSSCSSCCCEEEC---TTTCCEEEEETTTTEEEEECSSSSCC-------EEECCCSSSCSSCCCCEEET-T
T ss_pred CCCCeeEEEeCCCCCccEEEEe---ccCCEEEEEecCCCeEEEEccCCCce-------EEEEecCCcCCCceEeEEEC-C
Confidence 00001111 1112345678998 55 55566666678999999875321 11111111112344555543 2
Q ss_pred CCeEEEeeCCceEEEEe
Q 025649 232 SENLVVCDTSKVVKVYS 248 (250)
Q Consensus 232 ~~~l~s~~~d~~i~vw~ 248 (250)
.++++....+.|..++
T Consensus 596 -~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 596 -KVFWTDIINEAIFSAN 611 (699)
T ss_dssp -EEEEECSTTTCEEEEE
T ss_pred -EEEEEeCCCCeEEEEE
Confidence 3444555566777665
No 258
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.25 E-value=0.00061 Score=50.78 Aligned_cols=213 Identities=6% Similarity=-0.103 Sum_probs=116.3
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC---CCccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG---RPNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|+..|+.+.+....+. .......++|++.+..++++-..++.|..+++... .....+... ...
T Consensus 12 I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~------------~~~ 77 (316)
T 1ijq_A 12 VRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------------DIQ 77 (316)
T ss_dssp EEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS------------SCS
T ss_pred EEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC------------CCC
Confidence 6778887766555554 34567899999876646677777899999998751 222222101 112
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-ec------c
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-QS------G 151 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~ 151 (250)
...++++.+ ..+++.++-...+.|.++|+.......... ........++++|.+..+....... .. +
T Consensus 78 ~p~glavd~-----~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d 151 (316)
T 1ijq_A 78 APDGLAVDW-----IHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (316)
T ss_dssp CCCEEEEET-----TTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CcCEEEEee-----cCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence 346677764 134555555678899999988644332222 1224567889998655544221110 00 1
Q ss_pred CeeeeeeccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCC
Q 025649 152 GKRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT 230 (250)
Q Consensus 152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 230 (250)
....+.+ ....-.....++++ +++. +.++-+..+.|..+|+..... ..+......-.....+++.
T Consensus 152 G~~~~~~--~~~~~~~P~gla~d---~~~~~lY~~D~~~~~I~~~d~dg~~~-------~~~~~~~~~~~~P~giav~-- 217 (316)
T 1ijq_A 152 GVDIYSL--VTENIQWPNGITLD---LLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVF-- 217 (316)
T ss_dssp SCCEEEE--ECSSCSCEEEEEEE---TTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEE--
T ss_pred CCCeEEE--EECCCCCceEEEEe---ccCCEEEEEECCCCeEEEEecCCCce-------EEEeecCCccCCcEEEEEE--
Confidence 1111111 11123456889999 6544 445555678999999875311 1111111122345667764
Q ss_pred CCCeEEEeeCCceEEEEe
Q 025649 231 ESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 231 ~~~~l~s~~~d~~i~vw~ 248 (250)
.+.++++-...+.|..++
T Consensus 218 ~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 218 EDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp TTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEEe
Confidence 344455555566777665
No 259
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.23 E-value=0.00057 Score=49.50 Aligned_cols=190 Identities=4% Similarity=-0.098 Sum_probs=103.6
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|..+|+..+.....+. ........+++++++..++++-...+.|.++++.... ...+... ......
T Consensus 60 I~~~~~~g~~~~~~~~-~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~------------~~~~P~ 125 (267)
T 1npe_A 60 IGRASLHGGEPTTIIR-QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDT------------GLVNPR 125 (267)
T ss_dssp EEEEESSSCCCEEEEC-TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS------------SCSSEE
T ss_pred EEEEecCCCCcEEEEE-CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEEC------------CCCCcc
Confidence 4556655443322232 2234678999999766466677778899999986432 2222211 113457
Q ss_pred EEecCCCcccCCCCCEEEEEeC---CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-------eeeecc
Q 025649 82 AIAIPDADMLDKTNKICVVAKG---DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-------ILDQSG 151 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 151 (250)
.+++.| ++..|..+.. .+.|..+++......... .........+++++++..+.... ..+...
T Consensus 126 ~i~vd~------~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~-~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 126 GIVTDP------VRGNLYWTDWNRDNPKIETSHMDGTNRRILA-QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp EEEEET------TTTEEEEEECCSSSCEEEEEETTSCCCEEEE-CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred EEEEee------CCCEEEEEECCCCCcEEEEEecCCCCcEEEE-ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence 888887 6666655543 468888888653322111 11124567889999876554211 111111
Q ss_pred CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC-CceeEEEecC
Q 025649 152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTP 229 (250)
Q Consensus 152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~ 229 (250)
.... ..+.+ ......++.. ++.++++....+.|..+|..++ +.+....... .....+++.|
T Consensus 199 -~~~~--~~~~~-~~~P~gi~~d----~~~lyva~~~~~~v~~~d~~~g---------~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 199 -PGRR--KVLEG-LQYPFAVTSY----GKNLYYTDWKTNSVIAMDLAIS---------KEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp -EEEE--EEEEC-CCSEEEEEEE----TTEEEEEETTTTEEEEEETTTT---------EEEEEECCSSCCCCCCEEEEC
T ss_pred -CceE--EEecC-CCCceEEEEe----CCEEEEEECCCCeEEEEeCCCC---------CceEEEccccccccceeeecC
Confidence 1111 11111 1233566654 3455555556789999999987 3333332222 2466777776
No 260
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.22 E-value=0.00071 Score=50.15 Aligned_cols=202 Identities=7% Similarity=-0.025 Sum_probs=109.1
Q ss_pred cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649 9 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA 88 (250)
Q Consensus 9 ~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 88 (250)
+.+.+..+. .. .....++|++++. ++++-..++.|..||... +....+.. .....++++.+
T Consensus 21 ~~~~~~~~p-~~-~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g-~~~~~~~~--------------~~~p~gia~~~- 81 (306)
T 2p4o_A 21 PAKIITSFP-VN-TFLENLASAPDGT-IFVTNHEVGEIVSITPDG-NQQIHATV--------------EGKVSGLAFTS- 81 (306)
T ss_dssp CEEEEEEEC-TT-CCEEEEEECTTSC-EEEEETTTTEEEEECTTC-CEEEEEEC--------------SSEEEEEEECT-
T ss_pred CceEeEeCC-CC-CCcceEEECCCCC-EEEEeCCCCeEEEECCCC-ceEEEEeC--------------CCCceeEEEcC-
Confidence 455666665 32 5678999999998 788877889999999864 33333332 24678899998
Q ss_pred cccCCCCCEEEEEeCC-C-eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee------eeeeccCeeeeee--
Q 025649 89 DMLDKTNKICVVAKGD-G-VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGKRLHLD-- 158 (250)
Q Consensus 89 ~~~~~~~~~l~~~~~d-~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-- 158 (250)
+++++++.... + .|..+|..+++...............++..+++..+++.. ..+.... ..+..
T Consensus 82 -----dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~-~~~v~~~ 155 (306)
T 2p4o_A 82 -----NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP-SGSIWLE 155 (306)
T ss_dssp -----TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred -----CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC-cEeEEEE
Confidence 88866655432 2 4777787776654332222112222333334443333210 0111000 00100
Q ss_pred c------cccCccccEEEEEeecCCCCCcEE-EEeeCCCeEEEEecCC-CcceecccccceeeeeeccCCceeEEEecCC
Q 025649 159 Y------SVGGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSR-FQGVQTSINNDLLIKNINLNKKVNWLCTTPT 230 (250)
Q Consensus 159 ~------~~~~h~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 230 (250)
. .....-.....+ + +++++| ++-...+.|..+|+.. +... ..+.+.. ......+++.+
T Consensus 156 ~~~~~~~~~~~~~~~pngi--s---~dg~~lyv~d~~~~~I~~~~~~~~g~~~----~~~~~~~----~~~P~gi~vd~- 221 (306)
T 2p4o_A 156 HPMLARSNSESVFPAANGL--K---RFGNFLYVSNTEKMLLLRIPVDSTDKPG----EPEIFVE----QTNIDDFAFDV- 221 (306)
T ss_dssp CGGGSCSSTTCCSCSEEEE--E---EETTEEEEEETTTTEEEEEEBCTTSCBC----CCEEEEE----SCCCSSEEEBT-
T ss_pred CCccccccccCCCCcCCCc--C---cCCCEEEEEeCCCCEEEEEEeCCCCCCC----ccEEEec----cCCCCCeEECC-
Confidence 0 001111234555 6 666544 5555678999999875 2110 0011111 13456678886
Q ss_pred CCCeEEEeeCCceEEEEeC
Q 025649 231 ESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 231 ~~~~l~s~~~d~~i~vw~~ 249 (250)
+|.++++....+.|.+++.
T Consensus 222 dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 222 EGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp TCCEEEECBTTCCEEEECT
T ss_pred CCCEEEEeCCCCeEEEECC
Confidence 7776666556677887763
No 261
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.21 E-value=0.0011 Score=51.86 Aligned_cols=223 Identities=9% Similarity=0.002 Sum_probs=115.9
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC---Ce-EEEEEccCCCCc-cceecCCCCCCCCCCcccC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD---SK-LVMWDFSKGRPN-KIVNFGLPENNGNAGQCYN 76 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~-v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~ 76 (250)
|+.+|+.+++..... ........+++++++. ++++.... .. +...+...+... ..+. .
T Consensus 164 I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~--------------~ 226 (433)
T 4hw6_A 164 FRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC--------------N 226 (433)
T ss_dssp EEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE--------------E
T ss_pred EEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc--------------c
Confidence 677787777665433 3445678999999998 67665432 12 222332211110 0110 1
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeecccceeEEEee-------eee
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKVNIRDAEME-------ILD 148 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 148 (250)
......+++.| .++.+.++-..++.|+.+|..++... .............++++|+|+.+.... ..+
T Consensus 227 ~~~P~giavd~-----~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~ 301 (433)
T 4hw6_A 227 ARGAKTCAVHP-----QNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVD 301 (433)
T ss_dssp CSSBCCCEECT-----TTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCCEEEEeC-----CCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEe
Confidence 12335566665 24555555567789999999876552 222222222334699999998544211 111
Q ss_pred ecc-Ceee---eee-ccc--cC---------ccccEEEEEe---------ecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649 149 QSG-GKRL---HLD-YSV--GG---------HTAAASCVAF---------SMFGERGKYLISGGNDKLVKVWDCSRFQGV 203 (250)
Q Consensus 149 ~~~-~~~~---~~~-~~~--~~---------h~~~v~~~~~---------~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 203 (250)
... .... ..+ ..+ .+ .-.....+++ . ++|+++++-...+.|+.++. .+...
T Consensus 302 ~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd---~~g~lyvaD~~n~~I~~~~~-~G~v~ 377 (433)
T 4hw6_A 302 YNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE---DEYDFYFCDRDSHTVRVLTP-EGRVT 377 (433)
T ss_dssp BCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS---CCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred CCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC---CCCcEEEEECCCCEEEEECC-CCCEE
Confidence 100 0000 000 000 00 1123567888 5 67888887777889999985 33211
Q ss_pred ecccccc-----eeee---eeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649 204 QTSINND-----LLIK---NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250 (250)
Q Consensus 204 ~~~~~~~-----~~~~---~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~ 250 (250)
....... .... ....-.....|++.|.++.++++=..++.|+.++++
T Consensus 378 t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 378 TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 1000000 0000 000112477899996577766665667889888753
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.20 E-value=0.0008 Score=49.84 Aligned_cols=185 Identities=10% Similarity=-0.001 Sum_probs=93.6
Q ss_pred CCeeeEEEcCCCCeEEEEecC-C-CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649 22 SICSSVQFIPWKPWEVISGGL-D-SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 99 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~-d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 99 (250)
.....+++.++++ ++++... + ..|..+|..+++........ .......++..+ ++..++
T Consensus 72 ~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~~------------~~~~~~g~~~~~------~~~~~v 132 (306)
T 2p4o_A 72 GKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLP------------DAIFLNGITPLS------DTQYLT 132 (306)
T ss_dssp SEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECT------------TCSCEEEEEESS------SSEEEE
T ss_pred CCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeCC------------CccccCcccccC------CCcEEE
Confidence 4678999999998 6665533 2 24666777776643322211 011223444333 455555
Q ss_pred EEeCCCeEEEEeCCCceeEee--c------c-CCCCCCccceeecccceeEEEee-------eeeeccCeeeeeeccccC
Q 025649 100 VAKGDGVVDVINIESELNISR--S------K-STTKPLKGSQSTSKVNIRDAEME-------ILDQSGGKRLHLDYSVGG 163 (250)
Q Consensus 100 ~~~~d~~i~~~d~~~~~~~~~--~------~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 163 (250)
+-..++.|.++|..++..... . . ...-.....+ +++++.+.... .++............+.
T Consensus 133 ~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~- 209 (306)
T 2p4o_A 133 ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV- 209 (306)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-
T ss_pred EECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-
Confidence 555688999999876432110 0 0 0001122333 77776554221 11211100000000110
Q ss_pred ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC--CCCCeEEEee
Q 025649 164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP--TESENLVVCD 239 (250)
Q Consensus 164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~ 239 (250)
.......+++. ++|+++++....+.|.++|.. +.. ..+.........+.+++|.. ++++.|+.++
T Consensus 210 ~~~~P~gi~vd---~dG~l~va~~~~~~V~~~~~~-G~~-------~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 210 EQTNIDDFAFD---VEGNLYGATHIYNSVVRIAPD-RST-------TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp ESCCCSSEEEB---TTCCEEEECBTTCCEEEECTT-CCE-------EEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred ccCCCCCeEEC---CCCCEEEEeCCCCeEEEECCC-CCE-------EEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 01234567788 889888877778899999975 311 01111222235578899872 2655555543
No 263
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.17 E-value=0.0012 Score=50.91 Aligned_cols=215 Identities=7% Similarity=-0.109 Sum_probs=111.4
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC---CccceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|+..|+........+. ....+..|+|++.+..++++-...+.|+.+++.... ....+... ...
T Consensus 94 I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~------------~~~ 159 (400)
T 3p5b_L 94 VRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------------DIQ 159 (400)
T ss_dssp EEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS------------SCS
T ss_pred eEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC------------CCC
Confidence 4455555444333333 445678999998766466666677889999886422 11122111 123
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-eccCe---e
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-QSGGK---R 154 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~ 154 (250)
....+++.+ ..+++.++-...+.|.+.++........... .......++++|.+..+....... ..... .
T Consensus 160 ~p~glavD~-----~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d 233 (400)
T 3p5b_L 160 APDGLAVDW-----IHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233 (400)
T ss_dssp CEEEEEEET-----TTTEEEEEETTTTEEEEECTTTCSEEEEEEC-SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred CcccEEEEe-----cCCceEEEECCCCeEEEEeCCCCceEEEEeC-CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence 456777765 2455555656778999999986544333322 224567889998655544111000 00000 0
Q ss_pred eeeeccc-cCccccEEEEEeecCCCCCcEE-EEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649 155 LHLDYSV-GGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 155 ~~~~~~~-~~h~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
......+ ...-.....++++ +++..| ++-+..+.|..+|+..... ..+......-.....++.. .+
T Consensus 234 G~~~~~~~~~~l~~P~glavd---~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~~~~~~~~l~~P~gl~v~--~~ 301 (400)
T 3p5b_L 234 GVDIYSLVTENIQWPNGITLD---LLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVF--ED 301 (400)
T ss_dssp SCSCEEEECSSCSCEEEEEEE---TTTTEEEEEETTTTEEEEEETTSCCC-------EEEEECSSTTSSEEEEEEE--TT
T ss_pred CCccEEEEECCCCceEEEEEE---eCCCEEEEEECCCCEEEEEeCCCCcc-------EEEEeCCCCCCCCEEEEEe--CC
Confidence 0000111 1222457889999 555544 4445578999999876421 1111111112334556653 33
Q ss_pred CeEEEeeCCceEEEEe
Q 025649 233 ENLVVCDTSKVVKVYS 248 (250)
Q Consensus 233 ~~l~s~~~d~~i~vw~ 248 (250)
.++.+-...+.|..+|
T Consensus 302 ~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 302 KVFWTDIINEAIFSAN 317 (400)
T ss_dssp EEEEEESSSCSEEEEE
T ss_pred EEEEecCCCCeEEEEE
Confidence 3444444555666555
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.16 E-value=0.00079 Score=50.24 Aligned_cols=71 Identities=10% Similarity=-0.006 Sum_probs=46.5
Q ss_pred CeeeEEEcC-CCCeEEEEecC-----------------CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEe
Q 025649 23 ICSSVQFIP-WKPWEVISGGL-----------------DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA 84 (250)
Q Consensus 23 ~v~~l~~~~-~~~~~l~s~s~-----------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 84 (250)
....+++.+ +|. +.++-.. ++.|..+|..+++...... . ......++
T Consensus 127 ~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~-------------~~~p~gia 191 (322)
T 2fp8_A 127 WLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-E-------------LHVPGGAE 191 (322)
T ss_dssp CEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-E-------------ESCCCEEE
T ss_pred ccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-C-------------CccCcceE
Confidence 467899999 887 5555432 3678888876654322211 1 12345688
Q ss_pred cCCCcccCCCCCEEEEE-eCCCeEEEEeCCC
Q 025649 85 IPDADMLDKTNKICVVA-KGDGVVDVINIES 114 (250)
Q Consensus 85 ~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~ 114 (250)
++| +++.|.++ ..++.|..|++..
T Consensus 192 ~~~------dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 192 VSA------DSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp ECT------TSSEEEEEEGGGTEEEEEESSS
T ss_pred ECC------CCCEEEEEeCCCCeEEEEECCC
Confidence 888 88866555 5668899999874
No 265
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.07 E-value=0.0015 Score=48.48 Aligned_cols=182 Identities=8% Similarity=0.047 Sum_probs=100.4
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEec---CCCcccCCCC
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI---PDADMLDKTN 95 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~ 95 (250)
+...--.+++|++....++++.-..++|..||...+..... ..+....... ....+.++.+ .| ++
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~-----~~~~~sGl~~~~~D~------~g 77 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGD-----GEQQMSGLSLLTHDN------SK 77 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSC-----CSEEEEEEEESSSSS------CC
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCC-----CcceeeEEEEeccCC------CC
Confidence 34445578999886663555555899999999975543322 2220000000 0123478888 46 67
Q ss_pred CEEEEEe-------------CCCeEEEEeCC---CceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeec
Q 025649 96 KICVVAK-------------GDGVVDVINIE---SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY 159 (250)
Q Consensus 96 ~~l~~~~-------------~d~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (250)
+++++.. .+..|..||+. +++........ .... -..
T Consensus 78 rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~--------------------------~~~~--~~~ 129 (334)
T 2p9w_A 78 RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFE--------------------------KVQD--EFE 129 (334)
T ss_dssp EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESH--------------------------HHHH--HHH
T ss_pred cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCc--------------------------cccc--ccc
Confidence 7776543 25778888888 55433221110 0000 000
Q ss_pred cccCc-cccEEEEEeecCCCCCcEEEEeeCC-CeEEEEecCCCcceecccccceeeee--eccCCceeEEEecCCCCCeE
Q 025649 160 SVGGH-TAAASCVAFSMFGERGKYLISGGND-KLVKVWDCSRFQGVQTSINNDLLIKN--INLNKKVNWLCTTPTESENL 235 (250)
Q Consensus 160 ~~~~h-~~~v~~~~~~p~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l 235 (250)
...+. ......++.. ++|+..++++.- +.|...+....... ...... .......+.|++.| ++..|
T Consensus 130 ~~~g~~~~~~nDvavD---~~GnaYVt~s~~~~~I~rV~pdG~~~~------~~~~~~~~~~~~~G~nGIv~~p-dg~~L 199 (334)
T 2p9w_A 130 KKAGKRPFGVVQSAQD---RDGNSYVAFALGMPAIARVSADGKTVS------TFAWESGNGGQRPGYSGITFDP-HSNKL 199 (334)
T ss_dssp HHHSSCCEEEEEEEEC---TTSCEEEEEEESSCEEEEECTTSCCEE------EEEECCCCSSSCCSCSEEEEET-TTTEE
T ss_pred ccccccccCCceeEEC---CCCCEEEeCCCCCCeEEEEeCCCCEEe------eeeecCCCcccccCcceEEEeC-CCCEE
Confidence 00111 1246778888 788888877776 77666666543110 000000 11122467899998 88877
Q ss_pred EEeeCCceEEEEeCC
Q 025649 236 VVCDTSKVVKVYSIS 250 (250)
Q Consensus 236 ~s~~~d~~i~vw~~~ 250 (250)
++...+|.+..+|+.
T Consensus 200 iv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 200 IAFGGPRALTAFDVS 214 (334)
T ss_dssp EEESSSSSEEEEECS
T ss_pred EEEcCCCeEEEEcCC
Confidence 777669999888863
No 266
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.06 E-value=0.0011 Score=53.60 Aligned_cols=86 Identities=13% Similarity=-0.000 Sum_probs=50.5
Q ss_pred eEEEcCCCCeEEEEecCC----------------CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649 26 SVQFIPWKPWEVISGGLD----------------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 89 (250)
Q Consensus 26 ~l~~~~~~~~~l~s~s~d----------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (250)
.+++.++.. ++..+..+ +.|..+|.++|+.+..++....+.-.. ......+. +...+
T Consensus 239 ~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~---~~~~~p~l-~~~~~-- 311 (571)
T 2ad6_A 239 WYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF---AGVNQMVL-TDQPV-- 311 (571)
T ss_dssp CCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC---CCCCCCEE-EEEEE--
T ss_pred eEEEcCCCC-eEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccccc---ccCCCCEE-Eeccc--
Confidence 356677665 55554432 369999999999888876431000000 00011111 11111
Q ss_pred ccCCCC---CEEEEEeCCCeEEEEeCCCceeEeecc
Q 025649 90 MLDKTN---KICVVAKGDGVVDVINIESELNISRSK 122 (250)
Q Consensus 90 ~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~ 122 (250)
++ +.++.++.+|.+.++|..+++.+....
T Consensus 312 ----~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 312 ----NGKMTPLLSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp ----TTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ----CCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence 46 357788899999999999998775543
No 267
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.03 E-value=0.0019 Score=48.13 Aligned_cols=213 Identities=8% Similarity=-0.095 Sum_probs=112.7
Q ss_pred cEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc-ceecCCCCCCCCCCcccCCC
Q 025649 2 WQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK-IVNFGLPENNGNAGQCYNPA 78 (250)
Q Consensus 2 i~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (250)
|+.+|+.... ....+. .......++|++.+..++.+-...+.|..+++..+.... .+..+ ..
T Consensus 15 I~~i~l~~~~~~~~~~~~--~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-------------l~ 79 (318)
T 3sov_A 15 LRLVDATNGKENATIVVG--GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-------------LL 79 (318)
T ss_dssp EEEEETTCTTSCCEEEEE--EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-------------CS
T ss_pred EEEEECCCCceEEEEEec--CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-------------CC
Confidence 5666766542 111222 223466899998665466777778899999987653222 12211 12
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeee-eeccC---ee
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL-DQSGG---KR 154 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~ 154 (250)
...++++.+ ..+++..+-...+.|.++++.......... ........++++|.+..+...... ..... ..
T Consensus 80 ~p~glavd~-----~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 153 (318)
T 3sov_A 80 SPDGLACDW-----LGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 153 (318)
T ss_dssp CCCEEEEET-----TTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred CccEEEEEc-----CCCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence 345666665 245555666677899999987643322221 222456788999865554411100 00000 00
Q ss_pred eeeeccc-cCccccEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649 155 LHLDYSV-GGHTAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 232 (250)
Q Consensus 155 ~~~~~~~-~~h~~~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (250)
......+ ...-.....++++ ++ +++..+-+..+.|..+|+..... .. ...+.......+++. .+
T Consensus 154 G~~~~~~~~~~l~~Pnglavd---~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~--~~~~~~~~P~glav~--~~ 219 (318)
T 3sov_A 154 GSSRFIIINSEIYWPNGLTLD---YEEQKLYWADAKLNFIHKSNLDGTNR-------QA--VVKGSLPHPFALTLF--ED 219 (318)
T ss_dssp SCSCEEEECSSCSCEEEEEEE---TTTTEEEEEETTTTEEEEEETTSCSC-------EE--EECSCCSCEEEEEEE--TT
T ss_pred CCCeEEEEECCCCCccEEEEe---ccCCEEEEEECCCCEEEEEcCCCCce-------EE--EecCCCCCceEEEEe--CC
Confidence 0000111 1122356889999 64 44555556678999999875321 11 111223345666664 23
Q ss_pred CeEEEeeCCceEEEEeC
Q 025649 233 ENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 233 ~~l~s~~~d~~i~vw~~ 249 (250)
.++.+-...+.|..++.
T Consensus 220 ~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 220 ILYWTDWSTHSILACNK 236 (318)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred EEEEEecCCCeEEEEEC
Confidence 34445445566666653
No 268
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=98.03 E-value=0.0006 Score=52.28 Aligned_cols=151 Identities=9% Similarity=-0.079 Sum_probs=90.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeeccCC---CCCCccceeecccceeEEEeeeeeeccC---------ee------e
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNIRDAEMEILDQSGG---------KR------L 155 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~------~ 155 (250)
++..++.+ .++.||.-++..+..-+....+ .-..+..+..+|+|.+++..+....... .. .
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence 56666665 4588898888744322223332 1236788999999999996443322210 00 0
Q ss_pred e----eecccc-CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec-ccccceeeeeeccCCceeEEEecC
Q 025649 156 H----LDYSVG-GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT-SINNDLLIKNINLNKKVNWLCTTP 229 (250)
Q Consensus 156 ~----~~~~~~-~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~ 229 (250)
+ .+..+. ....+|..+.|+|...++..|++-..|+.|++||+........ ................|.+++|.+
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence 1 011111 1256799999998887888999999999999999997332110 000000011122335688899987
Q ss_pred CCCCeEEEee--CCceEEE
Q 025649 230 TESENLVVCD--TSKVVKV 246 (250)
Q Consensus 230 ~~~~~l~s~~--~d~~i~v 246 (250)
++-.|...+ .+|.|+-
T Consensus 190 -~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 190 -DGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp -TSSCEEEEECTTSCEEEE
T ss_pred -CCcEEEEEecCCCCCEEE
Confidence 776676644 7787754
No 269
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.97 E-value=0.0032 Score=48.37 Aligned_cols=175 Identities=8% Similarity=-0.095 Sum_probs=93.2
Q ss_pred CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC
Q 025649 44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 123 (250)
Q Consensus 44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 123 (250)
..|+..++........+. ......+++|.+ .++.++.+-...+.|..+++...........
T Consensus 96 ~~I~~i~~~~~~~~~~~~--------------~~~~~~gl~~d~-----~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLN--------------NLENAIALDFHH-----RRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp SCEEEECTTSCCCEEEEC--------------SCSCEEEEEEET-----TTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ccceeeccCCCcEEEEec--------------CCCccEEEEEec-----CCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 567777776544333222 234578899886 2444555555778999999987653332222
Q ss_pred CCCCCccceeecccceeE-EEeee---eeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC-CeEEEEecC
Q 025649 124 TTKPLKGSQSTSKVNIRD-AEMEI---LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-KLVKVWDCS 198 (250)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d-~~i~iwd~~ 198 (250)
. ......+++++.+..+ .+... ..............+.........+++.| .++.++.+-... +.|..+++.
T Consensus 157 ~-~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp--~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 157 G-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHP--MEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp S-CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEET--TTTEEEEEECSSSCEEEEEETT
T ss_pred C-CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEc--CCCeEEEeccCCCCEEEEEeCC
Confidence 1 2345678888754443 32110 00000000000011122234568899993 244455554445 788888887
Q ss_pred CCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 199 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
... ........-...+.|++.|.++.+.++=...+.|..+++
T Consensus 234 G~~---------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~ 275 (386)
T 3v65_B 234 GSG---------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 275 (386)
T ss_dssp SCS---------CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred CCC---------cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 642 111111223357889998745544445455677887765
No 270
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.96 E-value=0.0034 Score=51.08 Aligned_cols=87 Identities=13% Similarity=0.041 Sum_probs=52.6
Q ss_pred eEEEcCCCCeEEEEecCC----------------CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649 26 SVQFIPWKPWEVISGGLD----------------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 89 (250)
Q Consensus 26 ~l~~~~~~~~~l~s~s~d----------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (250)
.+++.+... +++.+..+ +.|..+|.++|+.+..++....+.- ........+. +...
T Consensus 245 ~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~w---d~d~~~~p~l-~d~~--- 316 (599)
T 1w6s_A 245 WYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEW---DYAGVNVMML-SEQK--- 316 (599)
T ss_dssp CCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSS---CCCCCCCCEE-EEEE---
T ss_pred ceeEeCCCC-EEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccc---cccCCCccEE-Eecc---
Confidence 345666666 66666554 4899999999999888874411000 0000001111 1111
Q ss_pred ccCCCC---CEEEEEeCCCeEEEEeCCCceeEeecc
Q 025649 90 MLDKTN---KICVVAKGDGVVDVINIESELNISRSK 122 (250)
Q Consensus 90 ~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~ 122 (250)
+.++ ..++.++.+|.+.++|.++++.+....
T Consensus 317 --~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 317 --DKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp --CTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred --ccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 0156 567778999999999999998775543
No 271
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.96 E-value=0.006 Score=51.30 Aligned_cols=174 Identities=6% Similarity=-0.046 Sum_probs=93.4
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC----CccceecCCCCCCCCCCcccCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR----PNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|+..++...+....+. ....+..|+|.+....++++-...+.|+.+++.... ....+..+ .
T Consensus 406 Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~-------------l 470 (791)
T 3m0c_C 406 VRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-------------I 470 (791)
T ss_dssp EEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-------------C
T ss_pred eeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC-------------C
Confidence 3444444333332333 345667999998665466777777889988886421 11111111 2
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE-Ee-ee---eeec--
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA-EM-EI---LDQS-- 150 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~---~~~~-- 150 (250)
.....|++.+ ..+++.++-...+.|.+.++........+. ........|+++|.+..|+ +. +. ....
T Consensus 471 ~~P~GLAvD~-----~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 471 QAPDGLAVDW-----IHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp SCCCEEEEET-----TTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred CCcceeeeee-----cCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 3345677765 134555566678899999998654333322 2224577899998754444 21 10 0000
Q ss_pred cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649 151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~ 200 (250)
++..... .+...-.....|++.| ..+++.++-...+.|...++...
T Consensus 545 dG~~~~~--lv~~~l~~P~GLavD~--~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 545 NGVDIYS--LVTENIQWPNGITLDL--LSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp TSCCEEE--EECSSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCceEE--EEeCCCCCceEEEEec--CCCeEEEEeCCCCcEEEEecCCC
Confidence 1111111 1122234678899983 33444445455678999998764
No 272
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.95 E-value=0.00045 Score=56.99 Aligned_cols=101 Identities=13% Similarity=0.036 Sum_probs=60.5
Q ss_pred eEEEcC-CCCeEEEEecCCC-----------eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 26 SVQFIP-WKPWEVISGGLDS-----------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 26 ~l~~~~-~~~~~l~s~s~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
..++.+ +++ +++.|+.+. .+.+||..+++......... .+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~----------~~~~~~~~~~~~~------ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT----------KHDMFCPGISMDG------ 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC----------SCCCSSCEEEECT------
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC----------CCCCccccccCCC------
Confidence 566777 777 777776542 58899998776432221110 0112233455555
Q ss_pred CCCEEEEEe-CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE
Q 025649 94 TNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 143 (250)
Q Consensus 94 ~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (250)
++++++.|+ .++.+.+||..+++.......+....-..+...++|+.++.
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~ 303 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTI 303 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEE
Confidence 889999988 45689999998876554332222222234555668887773
No 273
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.94 E-value=0.0036 Score=50.83 Aligned_cols=71 Identities=17% Similarity=0.012 Sum_probs=43.4
Q ss_pred CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCC---CEEEEEeCCCeEEEEeCCCceeEee
Q 025649 44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN---KICVVAKGDGVVDVINIESELNISR 120 (250)
Q Consensus 44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~ 120 (250)
+.|..+|.++|+.+..++....+.-. .......+. +.... .++ ..++.++.+|.++++|.++++.+..
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd---~~~~~~p~l-~~~~~-----~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 361 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWD---FSGNNELVL-FDYKA-----KDGKIVKATAHADRNGFFYVVDRSNGKLQNA 361 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSC---CCCCCCCEE-EEEEC-----SSSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCccc---ccCCCCcEE-Eeeec-----CCCCEEEEEEEECCCceEEEEECCCCCEecc
Confidence 68999999999998888743110000 000001111 11110 145 4788899999999999999988765
Q ss_pred ccC
Q 025649 121 SKS 123 (250)
Q Consensus 121 ~~~ 123 (250)
...
T Consensus 362 ~~~ 364 (582)
T 1flg_A 362 FPF 364 (582)
T ss_dssp EES
T ss_pred ccc
Confidence 443
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=0.0017 Score=50.63 Aligned_cols=149 Identities=7% Similarity=-0.046 Sum_probs=86.2
Q ss_pred eeEEecCCCcccCCC-CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCe-----
Q 025649 80 VHAIAIPDADMLDKT-NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK----- 153 (250)
Q Consensus 80 v~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 153 (250)
...++++| + +..|.++...+.|+.+|+..+....... .......++++++|+.+............
T Consensus 139 P~~lavdp------~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 139 AVWLSFDP------KNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp CCEEEEET------TEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred CCEEEECC------CCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence 34566664 3 4455555555889999998766544333 23567889999999855533221111000
Q ss_pred ----eeeeeccccCccccEEEEEeecCCC-CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649 154 ----RLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 228 (250)
Q Consensus 154 ----~~~~~~~~~~h~~~v~~~~~~p~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 228 (250)
.......+.. ......++++ | +|.++++-..++.|..+|...+... .+ ...+.......++++
T Consensus 211 ~~~g~~~~~~~l~~-~~~p~giavd---p~~g~lyv~d~~~~~V~~~~~~~~~~~-------~~-~~~~~~~~P~gia~~ 278 (430)
T 3tc9_A 211 TRESGFKVITELTK-GQNCNGAETH---PINGELYFNSWNAGQVFRYDFTTQETT-------PL-FTIQDSGWEFHIQFH 278 (430)
T ss_dssp EGGGTSCSEEEEEE-CSSCCCEEEC---TTTCCEEEEETTTTEEEEEETTTTEEE-------EE-EECSSSSCCEEEEEC
T ss_pred eCCCceeeeeeecc-CCCceEEEEe---CCCCEEEEEECCCCEEEEEECCCCcEE-------EE-EEcCCCCcceeEEEc
Confidence 0000011111 1234567888 7 7777777777889999999875210 11 111222457789999
Q ss_pred CCCCCeE-EEeeCCceEEEEeC
Q 025649 229 PTESENL-VVCDTSKVVKVYSI 249 (250)
Q Consensus 229 ~~~~~~l-~s~~~d~~i~vw~~ 249 (250)
| ++++| ++-...+.|..++.
T Consensus 279 p-dG~~lyv~d~~~~~I~~~~~ 299 (430)
T 3tc9_A 279 P-SGNYAYIVVVNQHYILRSDY 299 (430)
T ss_dssp T-TSSEEEEEETTTTEEEEEEE
T ss_pred C-CCCEEEEEECCCCEEEEEeC
Confidence 8 78744 44456778888763
No 275
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.90 E-value=0.0065 Score=49.81 Aligned_cols=210 Identities=6% Similarity=-0.063 Sum_probs=114.8
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|+..|+++.+....+....-.....|+|++.+..++++-..++.|..+++........+..+ .....
T Consensus 17 I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g-------------~~~P~ 83 (628)
T 4a0p_A 17 IRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-------------LDYPE 83 (628)
T ss_dssp EEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-------------CSCCC
T ss_pred EEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-------------CCCcc
Confidence 56667765443333321223457799999977646677777899999998654333223211 12345
Q ss_pred EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeeccc-ceeEEEeeeeeec------cCee
Q 025649 82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV-NIRDAEMEILDQS------GGKR 154 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~ 154 (250)
.+++.+ ..+++..+-...+.|.+.++.......... ..-.....++++|. |.++.+.-..... +...
T Consensus 84 GlAvD~-----~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 84 GMAVDW-----LGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp EEEEET-----TTTEEEEEETTTTEEEEEETTSTTCEEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred eEEEEe-----CCCEEEEEECCCCEEEEEecCCCcEEEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence 666665 145555665677899999997654322221 22245678999985 4444432100000 1111
Q ss_pred eeeeccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC
Q 025649 155 LHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 233 (250)
Q Consensus 155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 233 (250)
.+. +...-.....++++ +++. +..+-...+.|...|+..... + .+.........+++.. +.
T Consensus 158 ~~~---l~~~~~~P~GlalD---~~~~~LY~aD~~~~~I~~~d~dG~~~-------~---v~~~~l~~P~glav~~--~~ 219 (628)
T 4a0p_A 158 RTT---LVPNVGRANGLTID---YAKRRLYWTDLDTNLIESSNMLGLNR-------E---VIADDLPHPFGLTQYQ--DY 219 (628)
T ss_dssp CEE---EECSCSSEEEEEEE---TTTTEEEEEETTTTEEEEEETTSCSC-------E---EEEECCSCEEEEEEET--TE
T ss_pred eEE---EECCCCCcceEEEc---cccCEEEEEECCCCEEEEEcCCCCce-------E---EeeccCCCceEEEEEC--CE
Confidence 111 11233467899999 6544 444555678999999876421 1 1222233455677653 33
Q ss_pred eEEEeeCCceEEEEe
Q 025649 234 NLVVCDTSKVVKVYS 248 (250)
Q Consensus 234 ~l~s~~~d~~i~vw~ 248 (250)
++.+-...+.|...|
T Consensus 220 ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 220 IYWTDWSRRSIERAN 234 (628)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEecCCCCEEEEEE
Confidence 334433466666655
No 276
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.80 E-value=0.0058 Score=46.21 Aligned_cols=190 Identities=9% Similarity=-0.065 Sum_probs=99.9
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 102 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 102 (250)
..+|.+..++ . .|+.+. ...|+..++........+. ......+++|.+ .++.++.+-.
T Consensus 35 ~~~C~~~~~~-~-~ll~~~-~~~I~~i~~~g~~~~~~~~--------------~~~~~~~l~~d~-----~~~~ly~~D~ 92 (349)
T 3v64_C 35 RRSCKALGPE-P-VLLFAN-RIDIRQVLPHRSEYTLLLN--------------NLENAIALDFHH-----RRELVFWSDV 92 (349)
T ss_dssp SSCEEESSSC-C-EEEEEC-BSCEEEECTTSCCEEEEEC--------------SCSCEEEEEEET-----TTTEEEEEET
T ss_pred CCcccccccC-c-eeEeec-ccceEEEeCCCCeeEEeec--------------CCCceEEEEEec-----cccEEEEEec
Confidence 3456555553 3 333332 3457777775443322222 234578889886 2444445555
Q ss_pred CCCeEEEEeCCCceeEeeccCCCCCCccceeecccce-eEEEee------eeeeccCeeeeeeccccCccccEEEEEeec
Q 025649 103 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI-RDAEME------ILDQSGGKRLHLDYSVGGHTAAASCVAFSM 175 (250)
Q Consensus 103 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 175 (250)
..+.|..+++............ ......+++++.+. .+.+.. ..+. +...... .+.........+++.|
T Consensus 93 ~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g~ly~~d~~~~~I~~~~~-dG~~~~~--l~~~~l~~P~~iavdp 168 (349)
T 3v64_C 93 TLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANL-DGAHRKV--LLWQSLEKPRAIALHP 168 (349)
T ss_dssp TTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEET-TSCSCEE--EECTTCSCEEEEEEET
T ss_pred cCCceEEEecCCCCceEEEeCC-CCCccEEEEecCCCeEEEEcCCCCeEEEEcC-CCCceEE--EEeCCCCCcceEEEec
Confidence 7789999999875433322221 13456788887544 333211 1111 1111111 1112234568899993
Q ss_pred CCCCCcEEEEeeCC-CeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 176 FGERGKYLISGGND-KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 176 ~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.++.++.+-... +.|..+++.... ........-...+.+++.|.++.+.++-...+.|..+++
T Consensus 169 --~~g~ly~td~~~~~~I~r~~~dG~~---------~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 169 --MEGTIYWTDWGNTPRIEASSMDGSG---------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 232 (349)
T ss_dssp --TTTEEEEEECSSSCEEEEEETTSCS---------CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred --CcCeEEEeccCCCCEEEEEeCCCCC---------cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 245555555555 789998887632 111111223457889998745544444445677887775
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.80 E-value=0.0054 Score=51.50 Aligned_cols=91 Identities=10% Similarity=0.082 Sum_probs=57.8
Q ss_pred cEEEEcccc-eeee-eeccCCCCCeeeEEEcCCCCeEEEEecCC-----CeEEEEEccCCCCc--cceecCCCCCCCCCC
Q 025649 2 WQIIDIRQH-CLYK-SLRAGHSSICSSVQFIPWKPWEVISGGLD-----SKLVMWDFSKGRPN--KIVNFGLPENNGNAG 72 (250)
Q Consensus 2 i~iwd~~~~-~~~~-~l~~~h~~~v~~l~~~~~~~~~l~s~s~d-----g~v~iwd~~~~~~~--~~~~~~~~~~~~~~~ 72 (250)
|+++|+.++ +.+. .+. .....++|+||++ .|+....| ..|.++++.+++.. ..+...
T Consensus 203 l~v~dl~~g~~~l~~~~~----~~~~~~~WspDg~-~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~--------- 268 (751)
T 2xe4_A 203 IEFKRISDPSQTIADKVS----GTNGEIVWGPDHT-SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEH--------- 268 (751)
T ss_dssp EEEEETTCTTCCCCCCEE----EECSCCEECSSTT-EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECC---------
T ss_pred EEEEECCCCCEeCCcccc----CceeeEEEecCCC-EEEEEEECCCCCCCEEEEEECCCCchhcEEEEecC---------
Confidence 788898888 6332 122 1245789999998 45444443 35788888766432 222211
Q ss_pred cccCCCceeEEecCCCcccCCCCCEEEEEe---CCCeEEEEeCCCc
Q 025649 73 QCYNPAFVHAIAIPDADMLDKTNKICVVAK---GDGVVDVINIESE 115 (250)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~ 115 (250)
.......+.|+| ++++|+..+ ....|.++|+.++
T Consensus 269 ---~~~~~~~~~~Sp------Dg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 269 ---NPLFSAFMYKAA------DTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp ---CTTCEEEEEECT------TSSEEEEEEECSSCEEEEEEESSSC
T ss_pred ---CCceEEEEEECC------CCCEEEEEecCCCCceEEEEECCCC
Confidence 123456788998 999887765 3457888999875
No 278
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.76 E-value=0.00048 Score=55.80 Aligned_cols=81 Identities=9% Similarity=-0.004 Sum_probs=55.5
Q ss_pred CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec
Q 025649 42 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 121 (250)
Q Consensus 42 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 121 (250)
.+|.|..||+.+++.+..+..+ ..+.+..+.. .+..+++++.|+.|+.+|.++++.+..+
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~--------------~~~~~~~~~t------~gg~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEK--------------FAAWGGTLYT------KGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES--------------SCCCSBCEEE------TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCeEEEEECCCCCEEEEecCC--------------CCccceeEEE------CCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 3578999999999988777643 1122211111 4667778999999999999999998877
Q ss_pred cCCCCCCccceeecccceeEE
Q 025649 122 KSTTKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~ 142 (250)
..........+.+..+|+.++
T Consensus 502 ~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 502 KMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp ECSSCCCSCCEEEEETTEEEE
T ss_pred eCCCCcEeeeEEEEECCEEEE
Confidence 665433333445557777665
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.75 E-value=0.0065 Score=45.23 Aligned_cols=171 Identities=6% Similarity=-0.033 Sum_probs=89.9
Q ss_pred CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCCc---eeEe
Q 025649 44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESE---LNIS 119 (250)
Q Consensus 44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~---~~~~ 119 (250)
..|+..|+.+.+....+. ......+++|.+ .++ ++.+-..++.|..+++... ....
T Consensus 10 ~~I~~i~~~~~~~~~~~~--------------~~~~p~g~~~d~------~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP--------------NLRNVVALDTEV------ASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEEEC--------------SCSSEEEEEEET------TTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEehhc--------------CCCceEEEEEEe------CCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 468888988766544433 134578899987 544 4455556789999998761 2111
Q ss_pred eccCCCCCCccceeecccc-eeEEEe------eeeeeccCeeeeeeccccCccccEEEEEeecCCCC-CcEEEEeeCC-C
Q 025649 120 RSKSTTKPLKGSQSTSKVN-IRDAEM------EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER-GKYLISGGND-K 190 (250)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~~~l~s~~~d-~ 190 (250)
............+++++.+ ..+.+. ...+.. ....+.+ +.........+++. |. +.++.+.... +
T Consensus 70 ~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~--~~~~~~~P~~iavd---p~~g~ly~~d~~~~~ 143 (316)
T 1ijq_A 70 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL--FRENGSKPRAIVVD---PVHGFMYWTDWGTPA 143 (316)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEE--EECTTCCEEEEEEE---TTTTEEEEEECSSSC
T ss_pred EEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC-CCceEEE--EECCCCCcceEEeC---CCCCEEEEEccCCCC
Confidence 1111111345678888644 433321 111111 1111111 11122456889999 64 4444444333 7
Q ss_pred eEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 191 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 191 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.|...++.... ........-...+.+++.+.++.+.++-...+.|..+|+
T Consensus 144 ~I~~~~~dG~~---------~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~ 193 (316)
T 1ijq_A 144 KIKKGGLNGVD---------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 193 (316)
T ss_dssp EEEEEETTSCC---------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred eEEEEcCCCCC---------eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEec
Confidence 88888876531 111111223457889998744444444445678888875
No 280
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.73 E-value=0.00036 Score=56.63 Aligned_cols=81 Identities=10% Similarity=0.016 Sum_probs=57.5
Q ss_pred CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc
Q 025649 43 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 122 (250)
Q Consensus 43 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 122 (250)
+|.|..||+.+++.+.....+ ..+..-.... .+.+++.++.|+.++.||.++++.+.+..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~--------------~~~~~g~~~t------agglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH--------------LPLWAGVLAT------AGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES--------------SCCCSCCEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cceEEEEECCCCCEEEEecCC--------------CCCcccceEe------CCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 688999999999988777643 1111111111 46778889999999999999999998877
Q ss_pred CCCCCCccceeecccceeEEE
Q 025649 123 STTKPLKGSQSTSKVNIRDAE 143 (250)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ 143 (250)
........-+.+..+|+.++.
T Consensus 525 ~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 525 TGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp CSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCcccCceEEEECCEEEEE
Confidence 764334444677788876653
No 281
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.70 E-value=0.014 Score=47.77 Aligned_cols=174 Identities=9% Similarity=-0.037 Sum_probs=92.7
Q ss_pred cEEEEcccce-eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc-ceecCCCCCCCCCCcccCCCc
Q 025649 2 WQIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK-IVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 2 i~iwd~~~~~-~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (250)
|+..|+.... ....+. ..-.....|+|++.+..++++-...+.|..+++....... .+..+ -..
T Consensus 20 I~~i~~~~~~~~~~~~~-~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~-------------~~~ 85 (619)
T 3s94_A 20 LRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-------------LLS 85 (619)
T ss_dssp EEEECCC---------C-BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSS-------------CSC
T ss_pred EEEEeCCCCcceEEEEE-cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC-------------CCC
Confidence 5666665432 111122 2344577999998776456666667889888886543212 22211 235
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeE-EEeeeeeec------cC
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD-AEMEILDQS------GG 152 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~ 152 (250)
...+++.+ ..+++..+-...+.|.+.++.......... ..-.....++++|.+..+ .+.-..... ++
T Consensus 86 P~GlAvD~-----~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG 159 (619)
T 3s94_A 86 PDGLACDW-----LGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 159 (619)
T ss_dssp EEEEEEET-----TTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred cCeEEEEe-----cCCEEEEEeCCCCEEEEEECCCCCEEEEEe-CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC
Confidence 67788876 134455555677899999998654332222 222457789999875444 432000000 11
Q ss_pred eeeeeeccccCccccEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCC
Q 025649 153 KRLHLDYSVGGHTAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~ 200 (250)
...+.+ ....-.....++++ ++ +++..+-...+.|...|+...
T Consensus 160 ~~~~~l--~~~~~~~P~Glald---~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 160 SSRFII--INSEIYWPNGLTLD---YEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp CSCEEE--ECSSCSSEEEEEEE---TTTTEEEEEETTTCCEEEESSSCC
T ss_pred CceEEE--EeCCCCCCcEEEEE---ccCCEEEEEeCCCCeEEEecCCCC
Confidence 111111 11123456889999 54 455555556778999998764
No 282
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.67 E-value=0.019 Score=50.49 Aligned_cols=216 Identities=10% Similarity=0.018 Sum_probs=112.0
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEE---EcCCCCeEEEEec----------CCCeEEEEEccCCCCccceecCCCCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQ---FIPWKPWEVISGG----------LDSKLVMWDFSKGRPNKIVNFGLPENN 68 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~---~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~~ 68 (250)
|++.|..+.+.+..+.-.....+.+++ |..+.+.+|+.|. ..|.|.++++..++.....+..
T Consensus 809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~----- 883 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE----- 883 (1158)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE-----
T ss_pred EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE-----
Confidence 678888888877666533444555555 3333333788775 3588999998744322222211
Q ss_pred CCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe-eccCCCCCCccceeecccceeEEEeeee
Q 025649 69 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKVNIRDAEMEIL 147 (250)
Q Consensus 69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (250)
.++.+++++-- +|+ |++|- .+.|++|++...+.+. ..... ..+..+.....+.+++ ++-.
T Consensus 884 -------v~g~v~al~~~-------~g~-Lla~i-g~~l~vy~l~~~~~L~~~~~~~--~~i~~~~l~~~~~~I~-vgD~ 944 (1158)
T 3ei3_A 884 -------VKGAVYSMVEF-------NGK-LLASI-NSTVRLYEWTTEKELRTECNHY--NNIMALYLKTKGDFIL-VGDL 944 (1158)
T ss_dssp -------ESSCEEEEEEE-------TTE-EEEEE-TTEEEEEEECTTSCEEEEEEEC--CCSCEEEEEEETTEEE-EEES
T ss_pred -------cCCcCEEEeee-------CCE-EEEEc-CCEEEEEECCCCceEEEEeecc--ccEEEEEEeccCCEEE-EEEh
Confidence 24567777644 464 44443 4789999998654333 11111 1122223323344444 1110
Q ss_pred ee-------c-cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-
Q 025649 148 DQ-------S-GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL- 218 (250)
Q Consensus 148 ~~-------~-~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~- 218 (250)
-. . ....+..+.. ..+..+++++.+- .+ ..++.+..+|.+.+.......... .....+.....-|
T Consensus 945 ~~Sv~~~~y~~~~~~L~~~a~-D~~~~~vta~~~l---d~-~t~l~aD~~gNl~vl~~~~~~~~~-~~~~~L~~~~~fhl 1018 (1158)
T 3ei3_A 945 MRSVLLLAYKPMEGNFEEIAR-DFNPNWMSAVEIL---DD-DNFLGAENAFNLFVCQKDSAATTD-EERQHLQEVGLFHL 1018 (1158)
T ss_dssp SBCEEEEEEETTTTEEEEEEE-CCSCBCEEEEEEE---ET-TEEEEEETTSEEEEEEECTTCCST-TGGGBEEEEEEEEC
T ss_pred hheEEEEEEEcCCCeEEEEEe-ecccccEEEEEEE---cc-CcEEEEcCCCcEEEEecCCCCCCc-cccceeeeEEEEeC
Confidence 00 0 1111211111 2345678899887 33 577778899999999876532111 1111222222223
Q ss_pred CCceeEEEe---cCCC--------CCeEEEeeCCceEEEE
Q 025649 219 NKKVNWLCT---TPTE--------SENLVVCDTSKVVKVY 247 (250)
Q Consensus 219 ~~~v~~~~~---~~~~--------~~~l~s~~~d~~i~vw 247 (250)
...|+++.- .+.. ...++-++.+|.|-+.
T Consensus 1019 G~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 1019 GEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp SSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred CCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence 445666642 2211 2246777888888654
No 283
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.66 E-value=0.02 Score=48.35 Aligned_cols=202 Identities=9% Similarity=-0.037 Sum_probs=110.2
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 100 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 100 (250)
...|.++...++|. |..|+.+ -|.+||..+++.. .+.... ..........|.++...+ +|.+. .
T Consensus 262 ~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~~~-~~~~~~-----~~~~~l~~~~i~~i~~D~------~g~lW-i 325 (795)
T 4a2l_A 262 SNYIRSLAMDSQNR--LWIGTFN-DLNIYHEGTDSFA-SYSSNP-----VENGSLSQRSVRSIFMDS------QGGMW-L 325 (795)
T ss_dssp CSBEEEEEECTTSC--EEEEESS-CEEEEETTTTEEE-EECCCT-----TSTTSCSSSCEEEEEECT------TSCEE-E
T ss_pred CCeEEEEEEcCCCC--EEEEeCC-hhheEcCCCCeEE-EEecCC-----CCCCCCCCCcEEEEEEeC------CcCEE-E
Confidence 35699999998887 4445555 4888998765432 221110 000111235688888876 66644 5
Q ss_pred EeCCCeEEEEeCCCceeEeeccC-----CCCCCccceeecccceeEEEe--eeeeeccCe--eeeeeccc------cCcc
Q 025649 101 AKGDGVVDVINIESELNISRSKS-----TTKPLKGSQSTSKVNIRDAEM--EILDQSGGK--RLHLDYSV------GGHT 165 (250)
Q Consensus 101 ~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~------~~h~ 165 (250)
|+.++-|..|+..++........ -....+.++...++|...+.. +........ ..+....- .-..
T Consensus 326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (795)
T 4a2l_A 326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGS 405 (795)
T ss_dssp EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSC
T ss_pred EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCC
Confidence 66667789998766543221111 112457788888887765521 112222211 11111100 0123
Q ss_pred ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649 166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 245 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 245 (250)
..|.++... ++|+.|..|+.++-|..||.+++........ ........|.++...+ ++.+ ..|+.+| +.
T Consensus 406 ~~v~~i~~d---~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~-----~~~l~~~~v~~i~~d~-~g~l-wigt~~G-l~ 474 (795)
T 4a2l_A 406 NNIKAVYVD---EKKSLVYIGTHAGGLSILHRNSGQVENFNQR-----NSQLVNENVYAILPDG-EGNL-WLGTLSA-LV 474 (795)
T ss_dssp SCEEEEEEE---TTTTEEEEEETTTEEEEEETTTCCEEEECTT-----TSCCSCSCEEEEEECS-SSCE-EEEESSC-EE
T ss_pred ccEEEEEEc---CCCCEEEEEeCcCceeEEeCCCCcEEEeecC-----CCCcCCCeeEEEEECC-CCCE-EEEecCc-ee
Confidence 568999888 7887456677777899999887632210000 0001235688887765 5654 4444444 66
Q ss_pred EEeC
Q 025649 246 VYSI 249 (250)
Q Consensus 246 vw~~ 249 (250)
+||.
T Consensus 475 ~~~~ 478 (795)
T 4a2l_A 475 RFNP 478 (795)
T ss_dssp EEET
T ss_pred EEeC
Confidence 6663
No 284
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.62 E-value=0.0019 Score=53.61 Aligned_cols=156 Identities=9% Similarity=-0.082 Sum_probs=82.1
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 102 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 102 (250)
....|++.+.+..++++-...+.|.+.++.... ...+... .......+++.| .+..|+.+.
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~------------~~~~P~giavDp------~~g~ly~td 514 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRE------------QGSKPRAIVVDP------VHGFMYWTD 514 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEECCC------------SSCCCCCEECCS------SSSCCEECC
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEEeC------------CCCCcceEEEcc------CCCcEEEcc
Confidence 356788886554366666667889999986433 2222111 012346778877 555454443
Q ss_pred -CC-CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-------eeeeccCeeeeeeccccCccccEEEEEe
Q 025649 103 -GD-GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-------ILDQSGGKRLHLDYSVGGHTAAASCVAF 173 (250)
Q Consensus 103 -~d-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 173 (250)
.. +.|..+++.......... ..-.....|+++|++..|..+. ..+.. ....+.+............+++
T Consensus 515 ~~~~~~I~~~~~dG~~~~~l~~-~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d-G~~~~~~~~~~~~~~~P~glav 592 (699)
T 1n7d_A 515 WGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAV 592 (699)
T ss_dssp CSSSCCEEBCCSSSCCCCEESC-SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS-SSCCEEECCCSSSCSSCCCCEE
T ss_pred cCCCCeEEEEeCCCCCeeEEEe-CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC-CCceEEEEecCCcCCCceEeEE
Confidence 22 678888776433222111 1124567899998866554211 11111 1111111111111222345565
Q ss_pred ecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649 174 SMFGERGKYLISGGNDKLVKVWDCSRFQGV 203 (250)
Q Consensus 174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 203 (250)
. .+ .++++....+.|..+|..+++..
T Consensus 593 d---~~-~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 593 F---ED-KVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp E---TT-EEEEECSTTTCEEEEETTTEEEE
T ss_pred E---CC-EEEEEeCCCCeEEEEEccCCCce
Confidence 5 43 56666667789999998776443
No 285
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.57 E-value=0.027 Score=47.56 Aligned_cols=194 Identities=12% Similarity=-0.011 Sum_probs=108.9
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 100 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 100 (250)
...|.++...+++. +|..|+.++-|..+|..+++.. .+.... .. .....|.++...+ ++++.+.
T Consensus 405 ~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~~~~~-~~~~~~------~~--l~~~~v~~i~~d~------~g~lwig 468 (795)
T 4a2l_A 405 SNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNSGQVE-NFNQRN------SQ--LVNENVYAILPDG------EGNLWLG 468 (795)
T ss_dssp CSCEEEEEEETTTT-EEEEEETTTEEEEEETTTCCEE-EECTTT------SC--CSCSCEEEEEECS------SSCEEEE
T ss_pred CccEEEEEEcCCCC-EEEEEeCcCceeEEeCCCCcEE-EeecCC------CC--cCCCeeEEEEECC------CCCEEEE
Confidence 35788999888886 5788888778999998876532 222110 00 1245688888776 6765555
Q ss_pred EeCCCeEEEEeCCCceeEeeccC-----CCCCCccceeecccceeEEEee----eeeeccCeeeeeec--c-ccCccccE
Q 025649 101 AKGDGVVDVINIESELNISRSKS-----TTKPLKGSQSTSKVNIRDAEME----ILDQSGGKRLHLDY--S-VGGHTAAA 168 (250)
Q Consensus 101 ~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~-~~~h~~~v 168 (250)
. . +-+.+||..+++....... .....+.++...++|...+... .++..... ..... . -......|
T Consensus 469 t-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~-~~~~~~~~~~~l~~~~i 545 (795)
T 4a2l_A 469 T-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLD-IQKASILPVSNVTKLFT 545 (795)
T ss_dssp E-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEESSCEEEEEEETTE-EEECCCSCSCGGGGSCE
T ss_pred e-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeCCceEEEeCCCCe-EEEecCCCCCCCCCCee
Confidence 4 4 4588999887655433211 1124577888888887665321 11111111 11000 0 01234578
Q ss_pred EEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-CCceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649 169 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTSKVVKVY 247 (250)
Q Consensus 169 ~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~vw 247 (250)
.++... ++|++.++.. . -|..||..+.... ......+. ...|.++...+ +|.+.+++ ..| |..|
T Consensus 546 ~~i~~d---~~g~lWigT~-~-Gl~~~d~~~~~~~-------~~~~~~gl~~~~i~~i~~d~-~g~lWi~t-~~G-l~~~ 610 (795)
T 4a2l_A 546 NCIYEA---SNGIIWVGTR-E-GFYCFNEKDKQIK-------RYNTTNGLPNNVVYGILEDS-FGRLWLST-NRG-ISCF 610 (795)
T ss_dssp EEEEEC---TTSCEEEEES-S-CEEEEETTTTEEE-------EECGGGTCSCSCEEEEEECT-TSCEEEEE-TTE-EEEE
T ss_pred EEEEEC---CCCCEEEEeC-C-CceeECCCCCcEE-------EeCCCCCCchhheEEEEECC-CCCEEEEc-CCc-eEEE
Confidence 999988 7888666554 3 6888998775211 00001111 23577777664 66644443 344 4445
Q ss_pred e
Q 025649 248 S 248 (250)
Q Consensus 248 ~ 248 (250)
+
T Consensus 611 ~ 611 (795)
T 4a2l_A 611 N 611 (795)
T ss_dssp E
T ss_pred c
Confidence 4
No 286
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.57 E-value=0.015 Score=47.37 Aligned_cols=104 Identities=8% Similarity=0.110 Sum_probs=64.6
Q ss_pred cEEEEc-ccceeeeeeccCCCC-----------CeeeEEEcCCCCeE----EEEecCCCeEEEEEccCCCCccceecCCC
Q 025649 2 WQIIDI-RQHCLYKSLRAGHSS-----------ICSSVQFIPWKPWE----VISGGLDSKLVMWDFSKGRPNKIVNFGLP 65 (250)
Q Consensus 2 i~iwd~-~~~~~~~~l~~~h~~-----------~v~~l~~~~~~~~~----l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 65 (250)
|.-+|. ++|+.+.++. .... ....++++|.+. . ++.++.|+.|..+|.++|+.+........
T Consensus 75 v~AlD~~~tG~~lW~~~-~~~~~~~~~~~~~~~~~~g~av~p~~g-~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~ 152 (599)
T 1w6s_A 75 TFALGLDDPGTILWQDK-PKQNPAARAVACCDLVNRGLAYWPGDG-KTPALILKTQLDGNVAALNAETGETVWKVENSDI 152 (599)
T ss_dssp EEEEETTCTTSEEEEEC-CCCCGGGGGGCSSCSCCCCCEEECCCS-SSCCEEEEECTTSEEEEEETTTCCEEEEEECCCG
T ss_pred EEEEeCCCCCcEEEEEC-CCCCccccccccccccccceEEEecCC-cceeEEEEEcCCCEEEEEECCCCCEEEeecCCCC
Confidence 456788 7888887776 2211 012355644443 4 88888999999999999998887764310
Q ss_pred CCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe------CCCeEEEEeCCCceeEeeccC
Q 025649 66 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK------GDGVVDVINIESELNISRSKS 123 (250)
Q Consensus 66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~ 123 (250)
..-..+.-+|... ++ .+++++ .++.|+.+|.++++.+.....
T Consensus 153 ------------~~~~~~~ssP~v~---~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 153 ------------KVGSTLTIAPYVV---KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp ------------GGTCBCCSCCEEE---TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred ------------CccceeecCCEEE---CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 0001111122111 34 455554 379999999999998766554
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.53 E-value=0.011 Score=46.16 Aligned_cols=149 Identities=5% Similarity=-0.046 Sum_probs=83.7
Q ss_pred eeEEecCCCcccCCC--CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeee
Q 025649 80 VHAIAIPDADMLDKT--NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL 157 (250)
Q Consensus 80 v~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (250)
...+++.| + ...|..+...+.|+.+|+.++....... .......++++++|+++++. ............
T Consensus 141 P~gvavd~------~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~lyVad-~~~~~~~~gv~~ 211 (433)
T 4hw6_A 141 IWRMMFDP------NSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGDMVVVD-DQSSDTNTGIYL 211 (433)
T ss_dssp CCEEEECT------TTTTCEEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEECTTCCEEEEE-CCSCTTSEEEEE
T ss_pred CceEEEcc------ccCCCEEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEECCCCCEEEEc-CCCCcccceEEE
Confidence 45677775 4 3445555444899999998776654433 23567889999999955432 111000000000
Q ss_pred e---------ccccCccccEEEEEeecCCC-CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEe
Q 025649 158 D---------YSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 227 (250)
Q Consensus 158 ~---------~~~~~h~~~v~~~~~~p~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 227 (250)
+ ..+. .......++++ | +|.++++-..++.|+.+|..++.... .+. ..+.......+++
T Consensus 212 ~~~~~~~~~~~~~~-~~~~P~giavd---~~~G~lyv~d~~~~~V~~~d~~~g~~~~------~~~-~~~~~~~~~~ia~ 280 (433)
T 4hw6_A 212 FTRASGFTERLSLC-NARGAKTCAVH---PQNGKIYYTRYHHAMISSYDPATGTLTE------EEV-MMDTKGSNFHIVW 280 (433)
T ss_dssp ECGGGTTCCEEEEE-ECSSBCCCEEC---TTTCCEEECBTTCSEEEEECTTTCCEEE------EEE-ECSCCSSCEEEEE
T ss_pred EECCCCeecccccc-ccCCCCEEEEe---CCCCeEEEEECCCCEEEEEECCCCeEEE------EEe-ccCCCCCcccEEE
Confidence 0 0010 11234567778 6 77777777678899999998653210 011 1111222346899
Q ss_pred cCCCCCeEE-EeeCCceEEEEeC
Q 025649 228 TPTESENLV-VCDTSKVVKVYSI 249 (250)
Q Consensus 228 ~~~~~~~l~-s~~~d~~i~vw~~ 249 (250)
+| +++.|+ +-...+.|+.+++
T Consensus 281 dp-dG~~LYvad~~~~~I~~~~~ 302 (433)
T 4hw6_A 281 HP-TGDWAYIIYNGKHCIYRVDY 302 (433)
T ss_dssp CT-TSSEEEEEETTTTEEEEEEB
T ss_pred eC-CCCEEEEEeCCCCEEEEEeC
Confidence 97 777444 4445678888764
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.44 E-value=0.021 Score=42.90 Aligned_cols=188 Identities=10% Similarity=0.074 Sum_probs=105.3
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCC----CC---eEEEEecC--CCeEEEEEcc-CCCCccceecC-CCCCCCC
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPW----KP---WEVISGGL--DSKLVMWDFS-KGRPNKIVNFG-LPENNGN 70 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~----~~---~~l~s~s~--dg~v~iwd~~-~~~~~~~~~~~-~~~~~~~ 70 (250)
+.+||+ +|+.++.+. . +.++.+..-|. |+ ..+++.-. +++|++|++. ....+..+... .+
T Consensus 52 L~Vydl-~G~~l~~~~-~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~p----- 122 (355)
T 3amr_A 52 LVVYSL-DGKMLHSYN-T--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHP----- 122 (355)
T ss_dssp EEEEET-TSCEEEEEC-C--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSC-----
T ss_pred EEEEcC-CCcEEEEcc-C--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccC-----
Confidence 578999 899988887 4 55677776663 21 12344444 6899999774 12223333100 00
Q ss_pred CCcccCCCceeEEec--CCCcccCCCCC-EEEEEeCCCeEEEEeCCC---ceeEeeccCCCCCCccceeecccceeEEEe
Q 025649 71 AGQCYNPAFVHAIAI--PDADMLDKTNK-ICVVAKGDGVVDVINIES---ELNISRSKSTTKPLKGSQSTSKVNIRDAEM 144 (250)
Q Consensus 71 ~~~~~~~~~v~~~~~--~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (250)
.......++.+++ +| ..++ ++++...+|.+..|++.. ++.
T Consensus 123 --v~t~~~~pyGlcly~~~-----~~g~~yafV~~k~G~~~q~~l~~~~~g~~--------------------------- 168 (355)
T 3amr_A 123 --IATAINEVYGFTLYHSQ-----KTGKYYAMVTGKEGEFEQYELKADKNGYI--------------------------- 168 (355)
T ss_dssp --EECCCSSCCCEEEEECT-----TTCCEEEEEECSSSEEEEEEEEECTTSCE---------------------------
T ss_pred --cCCCCCCeeEEEEEecC-----CCCcEEEEEECCCCeEEEEEEEeCCCCcc---------------------------
Confidence 0000144566666 55 2343 688888889999888842 211
Q ss_pred eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee-ec-cCCce
Q 025649 145 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-IN-LNKKV 222 (250)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~-~~~~v 222 (250)
..+.++++.-. ..+..+... +....|+.+-++..|..+|.+...... ..++... .+ ....+
T Consensus 169 ---------~~~lVR~f~lg-sq~EgcvvD---d~~g~Lyv~eEd~GIw~~da~p~~~~~----~~~v~~~~~g~l~aDv 231 (355)
T 3amr_A 169 ---------SGKKVRAFKMN-SQTEGMAAD---DEYGRLYIAEEDEAIWKFSAEPDGGSN----GTVIDRADGRHLTRDI 231 (355)
T ss_dssp ---------EEEEEEEEECS-SCEEEEEEE---TTTTEEEEEETTTEEEEEECSTTSCSC----CEEEEEBSSSSBCSCE
T ss_pred ---------cceEEEEecCC-CCcceEEEc---CCCCeEEEecccceEEEEeCCcCCCCC----ceEEEEecCCccccCc
Confidence 12233344332 357788888 677788888888777777755321000 0222222 12 22357
Q ss_pred eEEEecC-CCCC-eEEEee-CCceEEEEeC
Q 025649 223 NWLCTTP-TESE-NLVVCD-TSKVVKVYSI 249 (250)
Q Consensus 223 ~~~~~~~-~~~~-~l~s~~-~d~~i~vw~~ 249 (250)
..|+..+ .+++ +|++++ .++...+||.
T Consensus 232 EGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 232 EGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 7777642 2444 555555 6778999986
No 289
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.43 E-value=0.042 Score=46.35 Aligned_cols=155 Identities=12% Similarity=0.001 Sum_probs=89.9
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 100 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 100 (250)
...|.++...+++. |..|+.++-|..+|..+++... +... ......|.++...+ ++++.+
T Consensus 406 ~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~-~~~~----------~~~~~~v~~i~~d~------~g~lwi- 465 (781)
T 3v9f_A 406 SNSVLCSLKDSEGN--LWFGTYLGNISYYNTRLKKFQI-IELE----------KNELLDVRVFYEDK------NKKIWI- 465 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEETTEEEEEECSSSCEEEE-CCST----------TTCCCCEEEEEECT------TSEEEE-
T ss_pred CcceEEEEECCCCC--EEEEeccCCEEEEcCCCCcEEE-eccC----------CCCCCeEEEEEECC------CCCEEE-
Confidence 46788999888886 5557766778889887664322 2100 01235688887775 665544
Q ss_pred EeCCCeEEEEeCCCceeEeeccCC----CCCCccceeecccceeEEEee--eeeeccC--eeeeeeccccC-ccccEEEE
Q 025649 101 AKGDGVVDVINIESELNISRSKST----TKPLKGSQSTSKVNIRDAEME--ILDQSGG--KRLHLDYSVGG-HTAAASCV 171 (250)
Q Consensus 101 ~~~d~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~-h~~~v~~~ 171 (250)
|+. +-|..||..+++........ ....+.++...++|...+... .....+. ...+......+ ....|.++
T Consensus 466 gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i 544 (781)
T 3v9f_A 466 GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQI 544 (781)
T ss_dssp EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEE
T ss_pred EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEE
Confidence 444 56889998876543222111 124677788888887665321 1111111 11111111111 23568899
Q ss_pred EeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649 172 AFSMFGERGKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 172 ~~~p~~~~~~~l~s~~~d~~i~iwd~~~~ 200 (250)
... ++|++.++.. +|.|..||..+.
T Consensus 545 ~~d---~~g~lWi~T~-~Glv~~~d~~~~ 569 (781)
T 3v9f_A 545 YRS---SKGQMWLATG-EGLVCFPSARNF 569 (781)
T ss_dssp EEC---TTSCEEEEET-TEEEEESCTTTC
T ss_pred EEC---CCCCEEEEEC-CCceEEECCCCC
Confidence 888 7888666554 666588998775
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.43 E-value=0.02 Score=42.60 Aligned_cols=175 Identities=8% Similarity=-0.050 Sum_probs=90.4
Q ss_pred CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc
Q 025649 43 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 122 (250)
Q Consensus 43 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 122 (250)
...|+..++........+... ......+++|.+ .++.+..+-...+.|..+++..+.......
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~------------~~~~~~~ld~d~-----~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~ 74 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG------------GLEDAAAVDFVF-----SHGLIYWSDVSEEAIKRTEFNKTESVQNVV 74 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE------------EEEEEEEEEEEG-----GGTEEEEEETTTTEEEEEETTSSSCCCEEE
T ss_pred cCeEEEEECCCCceEEEEEec------------CCCccEEEEEEe-----CCCEEEEEECCCCcEEEEEccCCCceEEEE
Confidence 467888998765322222111 123456788876 234455555677889999988753211111
Q ss_pred CCCCCCccceeeccc-ceeEEEee------eeeeccCeeeeeeccccCccccEEEEEeecCCCC-CcEEEEee-CCCeEE
Q 025649 123 STTKPLKGSQSTSKV-NIRDAEME------ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER-GKYLISGG-NDKLVK 193 (250)
Q Consensus 123 ~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~~~l~s~~-~d~~i~ 193 (250)
...-.....+++.+. +..+.+.. ..+. .....+.+ +.........+++. |. |.++.+-. ..+.|.
T Consensus 75 ~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~-dG~~~~~l--~~~~~~~P~giavd---p~~g~ly~td~~~~~~I~ 148 (318)
T 3sov_A 75 VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL-DGSLRKVL--FWQELDQPRAIALD---PSSGFMYWTDWGEVPKIE 148 (318)
T ss_dssp EECCSCCCEEEEETTTTEEEEEETTTTEEEEEET-TSCSCEEE--ECSSCSSEEEEEEE---GGGTEEEEEECSSSCEEE
T ss_pred cCCCCCccEEEEEcCCCeEEEEECCCCEEEEEEC-CCCcEEEE--EeCCCCCccEEEEe---CCCCEEEEEecCCCCEEE
Confidence 111134567888864 44433211 1111 11111111 11233456889999 54 44444432 357888
Q ss_pred EEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 194 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 194 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
..++.... ........-...+.+++.+.++.+.++=+..+.|..+|+
T Consensus 149 r~~~dG~~---------~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 149 RAGMDGSS---------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp EEETTSCS---------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEcCCCC---------eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 88876531 111111222456889998744444444445677888775
No 291
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.37 E-value=0.019 Score=41.15 Aligned_cols=159 Identities=6% Similarity=-0.031 Sum_probs=92.9
Q ss_pred CceeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeeec
Q 025649 78 AFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQS 150 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 150 (250)
..+..+++.| +++ ++++...++.|...|+. ++....+..........+++.+++.++++. -.....
T Consensus 27 ~~lSGla~~~------~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 27 NNISSLTWSA------QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp SCEEEEEEET------TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred cCcceeEEeC------CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4688999998 554 55667789999999998 777666654434567778888888876531 111111
Q ss_pred cCee---eeeec-cc--cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee----eeccCC
Q 025649 151 GGKR---LHLDY-SV--GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK----NINLNK 220 (250)
Q Consensus 151 ~~~~---~~~~~-~~--~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~ 220 (250)
.... ..... .+ .........++|+ |.++.|.++.+.....+|.+........ -..+.. ...+-.
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d---~~~~~L~va~E~~p~~i~~~~g~~~~~~---l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYS---RQDHTFWFFKEKNPIEVYKVNGLLSSNE---LHISKDKALQRQFTLD 173 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEE---TTTTEEEEEEESSSEEEEEEESTTCSSC---CEEEECHHHHHTCCSS
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEe---CCCCEEEEEECcCCceEEEEcccccCCc---eeeecchhhccccccC
Confidence 1111 11110 11 1234557899999 7776666666554455555541100000 011000 011233
Q ss_pred ceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 221 KVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 221 ~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
.+.++++.|..+.+++....++.+..+|.
T Consensus 174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~ 202 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHESRALQEVTL 202 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred CceeEEEcCCCCeEEEEECCCCeEEEEcC
Confidence 57889999988887788888888887774
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.29 E-value=0.063 Score=45.30 Aligned_cols=153 Identities=7% Similarity=-0.039 Sum_probs=78.5
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee---EeeccCCCCCCccceeecccceeEEEee-------e
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN---ISRSKSTTKPLKGSQSTSKVNIRDAEME-------I 146 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 146 (250)
...+.++++.+ .++.++++-...+.|+.+++..... ...+..........|++.+.+..|..+. .
T Consensus 423 ~~~~~gl~~d~-----~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v 497 (791)
T 3m0c_C 423 LRNVVALDTEV-----ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 497 (791)
T ss_dssp CSSEEEEEEET-----TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCceEEEeecc-----cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEE
Confidence 35567888876 2344555555678899898875311 1111121224566788887765444211 1
Q ss_pred eeeccCeeeeeeccccCccccEEEEEeecCCCC-CcEEEEeeCC-CeEEEEecCCCcceecccccceeeeeeccCCceeE
Q 025649 147 LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER-GKYLISGGND-KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 224 (250)
Q Consensus 147 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 224 (250)
.+.. ....+.+ +.........|++. |. |.++.+-... +.|...++.... ........-...+.
T Consensus 498 ~~ld-G~~~~~l--~~~~l~~P~gIaVD---p~~g~LYwtD~g~~~~I~~~~~dG~~---------~~~lv~~~l~~P~G 562 (791)
T 3m0c_C 498 ADTK-GVKRKTL--FRENGSKPRAIVVD---PVHGFMYWTDWGTPAKIKKGGLNGVD---------IYSLVTENIQWPNG 562 (791)
T ss_dssp EETT-SSSEEEE--EECTTCCEEEEEEE---TTTTEEEEEECSSSCEEEEEETTSCC---------EEEEECSSCSCEEE
T ss_pred EeCC-CCeEEEE--EeCCCCCcceEEEe---cCCCCEEEecCCCCCeEEEEecCCCc---------eEEEEeCCCCCceE
Confidence 1111 1111111 11223457899999 54 5555554333 788888887642 21122222346778
Q ss_pred EEecCCCCCeEEEeeCCceEEEEeC
Q 025649 225 LCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 225 ~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
|++.+..+.++++=...+.|...++
T Consensus 563 LavD~~~~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 563 ITLDLLSGRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEecCCCeEEEEeCCCCcEEEEec
Confidence 8888745544444344566777665
No 293
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.27 E-value=0.03 Score=41.18 Aligned_cols=181 Identities=18% Similarity=0.140 Sum_probs=84.2
Q ss_pred CCCeEEEEecCC-----CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC-
Q 025649 32 WKPWEVISGGLD-----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG- 105 (250)
Q Consensus 32 ~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~- 105 (250)
++. +++.|+.+ ..+.+||..+.+-...-... .+..-++++.. ++++++.|+.++
T Consensus 61 ~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p------------~~r~~~~~~~~-------~~~iyv~GG~~~~ 120 (302)
T 2xn4_A 61 AGL-VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR------------DRRSTLGAAVL-------NGLLYAVGGFDGS 120 (302)
T ss_dssp TTE-EEEESCBCSSSBCCCEEEEETTTTEEEEECCCS------------SCCBSCEEEEE-------TTEEEEEEEECSS
T ss_pred CCE-EEEEeCcCCCccccceEEECCCCCceeeCCCCC------------ccccceEEEEE-------CCEEEEEcCCCCC
Confidence 455 77777754 35788888765422111101 11111223322 567777777553
Q ss_pred ----eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC-------------eeeeeeccccCccccE
Q 025649 106 ----VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG-------------KRLHLDYSVGGHTAAA 168 (250)
Q Consensus 106 ----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~h~~~v 168 (250)
.+.+||+.+.+.......+. .........-+++.++ .|..+.... ..-..+..+.......
T Consensus 121 ~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv-~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 198 (302)
T 2xn4_A 121 TGLSSVEAYNIKSNEWFHVAPMNT-RRSSVGVGVVGGLLYA-VGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA 198 (302)
T ss_dssp CEEEEEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEE-ECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred ccCceEEEEeCCCCeEeecCCCCC-cccCceEEEECCEEEE-EeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc
Confidence 57889998876544322221 1222222223455444 444332210 0111111122111111
Q ss_pred EEEEeecCCCCCcEEEEeeCC-----CeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCc-
Q 025649 169 SCVAFSMFGERGKYLISGGND-----KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK- 242 (250)
Q Consensus 169 ~~~~~~p~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~- 242 (250)
++... ++.+++.|+.+ ..+.+||..+....... .. .....-..++.. ++++++.|+.++
T Consensus 199 -~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-------~~-~~~r~~~~~~~~--~~~i~v~GG~~~~ 263 (302)
T 2xn4_A 199 -GVGVL----NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA-------DM-NMCRRNAGVCAV--NGLLYVVGGDDGS 263 (302)
T ss_dssp -EEEEE----TTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC-------CC-SSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred -cEEEE----CCEEEEECCCCCCcccceEEEEeCCCCCEeeCC-------CC-CCccccCeEEEE--CCEEEEECCcCCC
Confidence 22222 56777787754 36889999876432211 00 011111122222 566777777653
Q ss_pred ----eEEEEeC
Q 025649 243 ----VVKVYSI 249 (250)
Q Consensus 243 ----~i~vw~~ 249 (250)
.+.+||+
T Consensus 264 ~~~~~v~~yd~ 274 (302)
T 2xn4_A 264 CNLASVEYYNP 274 (302)
T ss_dssp SBCCCEEEEET
T ss_pred cccccEEEEcC
Confidence 4778875
No 294
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.22 E-value=0.076 Score=44.78 Aligned_cols=204 Identities=10% Similarity=-0.017 Sum_probs=105.7
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCC-CCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN-NGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 99 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 99 (250)
...|.++...++|. |..|+..+-|.++|..+++............ ............|.++...+ ++. |-
T Consensus 257 ~~~i~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~------~g~-lW 327 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK--LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS------FNN-IW 327 (781)
T ss_dssp CCCEEEEEECTTSE--EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS------SCC-EE
T ss_pred CceEEEEEECCCCC--EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC------CCC-EE
Confidence 35689999888885 5566664567888987654322111000000 00000112345688887775 665 44
Q ss_pred EEeCCCeEEEEeCCCceeEeecc--------CCCCCCccceeecccceeEEEe--eeeeeccCeee--eeec-cccCccc
Q 025649 100 VAKGDGVVDVINIESELNISRSK--------STTKPLKGSQSTSKVNIRDAEM--EILDQSGGKRL--HLDY-SVGGHTA 166 (250)
Q Consensus 100 ~~~~d~~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~-~~~~h~~ 166 (250)
.|+.++-|..++...+....... .-....+.++...++|.+.+.. +.......... .... .-.....
T Consensus 328 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 407 (781)
T 3v9f_A 328 IGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSN 407 (781)
T ss_dssp EEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCS
T ss_pred EEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCc
Confidence 56666778999887654332211 1122457788888877655522 11111111111 1110 0012345
Q ss_pred cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee--eccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649 167 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN--INLNKKVNWLCTTPTESENLVVCDTSKVV 244 (250)
Q Consensus 167 ~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 244 (250)
.|.++... ++|++.+ |+.++-|..+|.+++... ... ......|.++...+ ++. |..|... -|
T Consensus 408 ~v~~i~~d---~~g~lWi-gt~~~Gl~~~~~~~~~~~---------~~~~~~~~~~~v~~i~~d~-~g~-lwigt~~-Gl 471 (781)
T 3v9f_A 408 SVLCSLKD---SEGNLWF-GTYLGNISYYNTRLKKFQ---------IIELEKNELLDVRVFYEDK-NKK-IWIGTHA-GV 471 (781)
T ss_dssp BEEEEEEC---TTSCEEE-EETTEEEEEECSSSCEEE---------ECCSTTTCCCCEEEEEECT-TSE-EEEEETT-EE
T ss_pred ceEEEEEC---CCCCEEE-EeccCCEEEEcCCCCcEE---------EeccCCCCCCeEEEEEECC-CCC-EEEEECC-ce
Confidence 78899887 6777655 666677899998775221 111 11235677777664 554 4445544 46
Q ss_pred EEEeC
Q 025649 245 KVYSI 249 (250)
Q Consensus 245 ~vw~~ 249 (250)
..||.
T Consensus 472 ~~~~~ 476 (781)
T 3v9f_A 472 FVIDL 476 (781)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 66653
No 295
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.13 E-value=0.043 Score=40.27 Aligned_cols=208 Identities=9% Similarity=0.023 Sum_probs=95.7
Q ss_pred cEEEEcccceee--eeeccCCCCCeeeEEEcCCCCeEEEEecCC-----CeEEEEEccCCC---CccceecCCCCCCCCC
Q 025649 2 WQIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGLD-----SKLVMWDFSKGR---PNKIVNFGLPENNGNA 71 (250)
Q Consensus 2 i~iwd~~~~~~~--~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d-----g~v~iwd~~~~~---~~~~~~~~~~~~~~~~ 71 (250)
+.++|+.+++-. ..+. ...... +++ .-++. +++.|+.+ ..+.+||+.+.+ -...-...
T Consensus 33 ~~~~d~~~~~W~~~~~~p-~~r~~~-~~~-~~~~~-l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p-------- 100 (301)
T 2vpj_A 33 VEKYDPKTQEWSFLPSIT-RKRRYV-ASV-SLHDR-IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN-------- 100 (301)
T ss_dssp EEEEETTTTEEEECCCCS-SCCBSC-EEE-EETTE-EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS--------
T ss_pred EEEEcCCCCeEEeCCCCC-hhhccc-cEE-EECCE-EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC--------
Confidence 567787766532 2222 111111 222 22455 77777754 468889987765 22211101
Q ss_pred CcccCCCceeEEecCCCcccCCCCCEEEEEeCC-----CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee
Q 025649 72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI 146 (250)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (250)
.+..-++++.. ++++++.|+.+ ..+.+||+.+.+.......+. ..........+++.++ .|.
T Consensus 101 ----~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv-~GG 167 (301)
T 2vpj_A 101 ----VRRGLAGATTL-------GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-AREGAGLVVASGVIYC-LGG 167 (301)
T ss_dssp ----SCCBSCEEEEE-------TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-CCBSCEEEEETTEEEE-ECC
T ss_pred ----CCccceeEEEE-------CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-CcccceEEEECCEEEE-ECC
Confidence 11111222222 56777777643 468899998866544322221 2222222233555554 443
Q ss_pred eeecc-----------CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC-----CeEEEEecCCCcceecccccc
Q 025649 147 LDQSG-----------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-----KLVKVWDCSRFQGVQTSINND 210 (250)
Q Consensus 147 ~~~~~-----------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~ 210 (250)
.+... ...-+.+..+........++ . -++++++.|+.+ ..+.+||+.+.......
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~----~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~---- 238 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA-L----LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT---- 238 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-E----ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC----
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE-E----ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC----
Confidence 32211 00111111222111111222 2 246777777764 46899999886432211
Q ss_pred eeeeeeccCCceeEEEecCCCCCeEEEeeCC-----ceEEEEeC
Q 025649 211 LLIKNINLNKKVNWLCTTPTESENLVVCDTS-----KVVKVYSI 249 (250)
Q Consensus 211 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~vw~~ 249 (250)
.. .....-.+++.. ++++++.|+.+ ..+.+||+
T Consensus 239 ---~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 239 ---SM-TTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp ---CC-SSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred ---CC-CCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence 00 111111122222 56677777765 45777775
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.99 E-value=0.065 Score=39.91 Aligned_cols=151 Identities=14% Similarity=0.145 Sum_probs=85.8
Q ss_pred cEEEEcccceeee-eeccC----CC--CCeeeEEE---cCCCCeEEEEec-------------CCCeEEEEEcc---CCC
Q 025649 2 WQIIDIRQHCLYK-SLRAG----HS--SICSSVQF---IPWKPWEVISGG-------------LDSKLVMWDFS---KGR 55 (250)
Q Consensus 2 i~iwd~~~~~~~~-~l~~~----h~--~~v~~l~~---~~~~~~~l~s~s-------------~dg~v~iwd~~---~~~ 55 (250)
|..||...+.... .+. + .. ..+..|.| .|+++ ++++.. .+..|..+|+. +++
T Consensus 37 V~~~~~~~~~~~~~~~~-~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~ 114 (334)
T 2p9w_A 37 IEVYNPKTQSHFNVVID-GASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSK 114 (334)
T ss_dssp EEEECTTTCCEEEECCT-TTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCC
T ss_pred EEEEcCCCCeEEEEecC-CccccCCCcceeeEEEEeccCCCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCC
Confidence 5567776443322 233 2 11 14579999 68876 666433 26789999998 788
Q ss_pred CccceecCCCCCCCCCCccc-CCCceeEEecCCCcccCCCCCEEEEEeCC-CeEEEEeCCCceeEeeccCCCCCCcccee
Q 025649 56 PNKIVNFGLPENNGNAGQCY-NPAFVHAIAIPDADMLDKTNKICVVAKGD-GVVDVINIESELNISRSKSTTKPLKGSQS 133 (250)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 133 (250)
.+....+.... .+...... .......+++.+ +|+..++++.. +.|...+.....
T Consensus 115 ~~~~~dL~~~~-~~~~~~~g~~~~~~nDvavD~------~GnaYVt~s~~~~~I~rV~pdG~~----------------- 170 (334)
T 2p9w_A 115 PVWSVNFEKVQ-DEFEKKAGKRPFGVVQSAQDR------DGNSYVAFALGMPAIARVSADGKT----------------- 170 (334)
T ss_dssp CSEEEESHHHH-HHHHHHHSSCCEEEEEEEECT------TSCEEEEEEESSCEEEEECTTSCC-----------------
T ss_pred EEEEecCcccc-ccccccccccccCCceeEECC------CCCEEEeCCCCCCeEEEEeCCCCE-----------------
Confidence 77665432000 00000000 012467788887 88888888877 776666555321
Q ss_pred ecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC
Q 025649 134 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 199 (250)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~ 199 (250)
+. .+... ..........+.+++. |+|+.|+.....|.+.-+|++.
T Consensus 171 -------~~---~~~~~--------~~~~~~~~G~nGIv~~---pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 -------VS---TFAWE--------SGNGGQRPGYSGITFD---PHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp -------EE---EEEEC--------CCCSSSCCSCSEEEEE---TTTTEEEEESSSSSEEEEECSS
T ss_pred -------Ee---eeeec--------CCCcccccCcceEEEe---CCCCEEEEEcCCCeEEEEcCCC
Confidence 11 00000 0011122345678999 8888777776699999999885
No 297
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.90 E-value=0.073 Score=39.15 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=50.7
Q ss_pred cEEEEcccceee--eeeccCCCCCeeeEEEcCCCCeEEEEecCC----CeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649 2 WQIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGLD----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY 75 (250)
Q Consensus 2 i~iwd~~~~~~~--~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
+.+||..+++-. ..+. .....-..+. -++. +++.|+.+ ..+.+||+.+.+-...-...
T Consensus 26 ~~~~d~~~~~W~~~~~~p-~~r~~~~~~~--~~~~-lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p------------ 89 (306)
T 3ii7_A 26 CRYFNPKDYSWTDIRCPF-EKRRDAACVF--WDNV-VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP------------ 89 (306)
T ss_dssp EEEEETTTTEEEECCCCS-CCCBSCEEEE--ETTE-EEEECCBSSSBCCEEEEEETTTTEEEEEECCS------------
T ss_pred EEEecCCCCCEecCCCCC-cccceeEEEE--ECCE-EEEEeCCCCCCcceEEEEeCCCCeEEECCCCC------------
Confidence 567888776532 2222 1122222222 2455 77777754 67888898776432221111
Q ss_pred CCCceeEEecCCCcccCCCCCEEEEEeCC------CeEEEEeCCCceeEee
Q 025649 76 NPAFVHAIAIPDADMLDKTNKICVVAKGD------GVVDVINIESELNISR 120 (250)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~ 120 (250)
.+..-++++.. ++++++.|+.+ ..+.+||..+.+....
T Consensus 90 ~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 90 TPRDSLAACAA-------EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp SCCBSCEEEEE-------TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred ccccceeEEEE-------CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 11111222222 56777777765 4688999998765443
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.87 E-value=0.12 Score=41.01 Aligned_cols=159 Identities=9% Similarity=-0.020 Sum_probs=85.0
Q ss_pred ceeEEecCCCcccCC-CCCEEEEEeCCCeEEEEeCCCceeEeeccCCC--CCCccceee-------cccceeEEEeeeee
Q 025649 79 FVHAIAIPDADMLDK-TNKICVVAKGDGVVDVINIESELNISRSKSTT--KPLKGSQST-------SKVNIRDAEMEILD 148 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~ 148 (250)
....|++.| . +++++++-...+.|++.|+..+.......... ......++| +++|..++.....+
T Consensus 140 ~p~~la~dp-----~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRLAFDP-----LNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp SEEEEEEET-----TEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCCEEEEcc-----CCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 345677776 1 24444444445789999999877665443321 234778899 99998555222221
Q ss_pred ec--cCeee---------eee-----ccccCccccEEEEEeecCCC-CCcEEEEeeCCCeEEEEecC-------CCccee
Q 025649 149 QS--GGKRL---------HLD-----YSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCS-------RFQGVQ 204 (250)
Q Consensus 149 ~~--~~~~~---------~~~-----~~~~~h~~~v~~~~~~p~~~-~~~~l~s~~~d~~i~iwd~~-------~~~~~~ 204 (250)
.. ..... ... ..+.. ......++++ | ++.++++-..++.|..+|+. ++..-.
T Consensus 215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavd---p~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIH---PINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp TTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEEC---TTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEc---CCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 00 00000 000 01111 1123566778 6 56667777778899999997 442100
Q ss_pred ----cccc-cceeeeeeccCCceeEEEecCCCCCeEEEe-eCCceEEEEe
Q 025649 205 ----TSIN-NDLLIKNINLNKKVNWLCTTPTESENLVVC-DTSKVVKVYS 248 (250)
Q Consensus 205 ----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~vw~ 248 (250)
.... .+.+ ...+.......++++| +++.|+.+ .....|+.++
T Consensus 291 p~~~~~~g~~~~l-~~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid 338 (496)
T 3kya_A 291 PIVKNNPNTFKQL-FTIADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSD 338 (496)
T ss_dssp CBGGGCTTTEEEE-EECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred cccccccccccee-EecCCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEe
Confidence 0000 0011 1122334567899998 78755444 4567787755
No 299
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.82 E-value=0.11 Score=40.02 Aligned_cols=157 Identities=8% Similarity=-0.091 Sum_probs=89.2
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
.....|++.+.+..+.++-...+.|.+.+++.......+... ......+++.| .+..|+..
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~-------------~~~P~~iavdp------~~g~ly~t 219 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-------------GSKPRAIVVDP------VHGFMYWT 219 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECS-------------SCCEEEEEEET------TTTEEEEE
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCC-------------CCCcceEEEec------ccCeEEEE
Confidence 456788898855536677777889999888644322222211 23457888887 55555555
Q ss_pred e-C-CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe-------eeeeeccCeeeeeeccccCccccEEEEE
Q 025649 102 K-G-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM-------EILDQSGGKRLHLDYSVGGHTAAASCVA 172 (250)
Q Consensus 102 ~-~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 172 (250)
. . .+.|...++........... .-.....+++++++..|..+ ...+.. ....+.+............++
T Consensus 220 d~~~~~~I~~~~~dG~~~~~~~~~-~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~~~~~~l~~P~gl~ 297 (400)
T 3p5b_L 220 DWGTPAKIKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLA 297 (400)
T ss_dssp ECSSSCCEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCCEEEEECSSTTSSEEEEE
T ss_pred eCCCCCEEEEEeCCCCccEEEEEC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC-CCccEEEEeCCCCCCCCEEEE
Confidence 4 2 47888888876433322221 12456789999876655522 111211 111111111112223445677
Q ss_pred eecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649 173 FSMFGERGKYLISGGNDKLVKVWDCSRFQGV 203 (250)
Q Consensus 173 ~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 203 (250)
+. .+.++.+-...+.|..+|..++...
T Consensus 298 v~----~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 298 VF----EDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp EE----TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred Ee----CCEEEEecCCCCeEEEEEcCCCCce
Confidence 65 4466667677788999997776443
No 300
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.60 E-value=0.17 Score=39.14 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=56.8
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc------------cceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN------------KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM 90 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (250)
.|..+..+|+|. +||..+ +..|.|-.+..+... +.+..+. . ....+..|..+.|+|...
T Consensus 67 ~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~------~-~~~~~s~I~qVlWHPl~~ 137 (452)
T 3pbp_A 67 DTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE------E-EVGPKSSIKKVLFHPKSY 137 (452)
T ss_dssp TTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG------C-C--CCCCEEEEEECTTBG
T ss_pred ceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC------c-ccCCCCceeEEEeccccC
Confidence 688899999999 677665 458999888743211 1222220 0 011256799999999665
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCC
Q 025649 91 LDKTNKICVVAKGDGVVDVINIES 114 (250)
Q Consensus 91 ~~~~~~~l~~~~~d~~i~~~d~~~ 114 (250)
.+..|++-..|+.|++||+..
T Consensus 138 ---~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 138 ---RDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp ---GGCEEEEEETTSCEEEEETTC
T ss_pred ---CCCeEEEEecCCEEEEEEccc
Confidence 577899999999999999986
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.52 E-value=0.22 Score=39.51 Aligned_cols=122 Identities=10% Similarity=0.074 Sum_probs=69.3
Q ss_pred cEEEEcccceeeeeeccC--CCCCeeeEEE-------cCCCCeEEEEecCCC------eEEEEEccC-CCCc-----cce
Q 025649 2 WQIIDIRQHCLYKSLRAG--HSSICSSVQF-------IPWKPWEVISGGLDS------KLVMWDFSK-GRPN-----KIV 60 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~--h~~~v~~l~~-------~~~~~~~l~s~s~dg------~v~iwd~~~-~~~~-----~~~ 60 (250)
|++.|++++.+...+..+ .......|+| ++++..++++-..++ .|.+.+... +... ..+
T Consensus 164 i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v 243 (496)
T 3kya_A 164 IQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI 243 (496)
T ss_dssp EEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE
T ss_pred EEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceee
Confidence 567787776665444411 2235789999 999984444443332 255555333 2221 111
Q ss_pred ecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCC-------Ccee-----------E-eec
Q 025649 61 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE-------SELN-----------I-SRS 121 (250)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~-------~~~~-----------~-~~~ 121 (250)
.. -.....++++| .++.++++-..++.|..+|+. ++.. . ...
T Consensus 244 ~~--------------~~~p~giavdp-----~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~ 304 (496)
T 3kya_A 244 AA--------------YKQCNGATIHP-----INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF 304 (496)
T ss_dssp EE--------------ESCCCCEEECT-----TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE
T ss_pred cc--------------CCCceEEEEcC-----CCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeE
Confidence 10 12335677777 245556666788899999997 4443 1 112
Q ss_pred cCCCCCCccceeecccceeEE
Q 025649 122 KSTTKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~ 142 (250)
..........++++|+|+.+.
T Consensus 305 ~~~~~~~p~~ia~~p~G~~lY 325 (496)
T 3kya_A 305 TIADPSWEFQIFIHPTGKYAY 325 (496)
T ss_dssp ECSSSSCCEEEEECTTSSEEE
T ss_pred ecCCCCCceEEEEcCCCCEEE
Confidence 222234567899999998543
No 302
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.48 E-value=0.16 Score=37.44 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=33.0
Q ss_pred CCcEEEEeeCC-----CeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC-----ceEEEEe
Q 025649 179 RGKYLISGGND-----KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS-----KVVKVYS 248 (250)
Q Consensus 179 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~vw~ 248 (250)
++++++.|+.+ ..+.+||+.+....... .. .....-.+++.. ++++++.|+.+ ..+.+||
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-------~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd 284 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA-------PM-KHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYD 284 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC-------CC-SSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC-------CC-CCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEc
Confidence 46777777654 46899999886433211 00 011111122232 56677777754 4567777
Q ss_pred C
Q 025649 249 I 249 (250)
Q Consensus 249 ~ 249 (250)
+
T Consensus 285 ~ 285 (308)
T 1zgk_A 285 P 285 (308)
T ss_dssp T
T ss_pred C
Confidence 5
No 303
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.47 E-value=0.17 Score=37.72 Aligned_cols=190 Identities=6% Similarity=-0.063 Sum_probs=95.2
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
..+..+.+.+++. .++.+. +|.|.. ....|+.-.....+ ....+..+.+.| ++.+++++
T Consensus 122 ~~~~~i~~~~~~~-~~~~~~-~g~v~~-S~DgG~tW~~~~~~------------~~~~~~~~~~~~------~~~~~~~g 180 (327)
T 2xbg_A 122 GSPRLIKALGNGS-AEMITN-VGAIYR-TKDSGKNWQALVQE------------AIGVMRNLNRSP------SGEYVAVS 180 (327)
T ss_dssp SCEEEEEEEETTE-EEEEET-TCCEEE-ESSTTSSEEEEECS------------CCCCEEEEEECT------TSCEEEEE
T ss_pred CCeEEEEEECCCC-EEEEeC-CccEEE-EcCCCCCCEEeecC------------CCcceEEEEEcC------CCcEEEEE
Confidence 4567788777665 555554 554321 12224432233222 234678888887 77777776
Q ss_pred eCCCeEEEEeC--CCceeEeeccCCCCCCccceeecccceeEEEee--eeeec--c-Ceeeeeeccc-cCccccEEEEEe
Q 025649 102 KGDGVVDVINI--ESELNISRSKSTTKPLKGSQSTSKVNIRDAEME--ILDQS--G-GKRLHLDYSV-GGHTAAASCVAF 173 (250)
Q Consensus 102 ~~d~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~-~~~~~~~~~~-~~h~~~v~~~~~ 173 (250)
...+..+-.|- .+-+.. .......+..+.+.+++..++... ..-.. + ...-+.+..- ..+...+.++.+
T Consensus 181 ~~G~~~~S~d~gG~tW~~~---~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~ 257 (327)
T 2xbg_A 181 SRGSFYSTWEPGQTAWEPH---NRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY 257 (327)
T ss_dssp TTSSEEEEECTTCSSCEEE---ECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred CCCcEEEEeCCCCCceeEC---CCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence 55444444443 222222 122235677788888887665311 11111 1 1111111110 012235888999
Q ss_pred ecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 174 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
. +++.+++.+. ++.| ++....+..- ..+.....+...++.+.+.+ ++ .++.++.+|.|.-++
T Consensus 258 ~---~~~~~~~~g~-~g~i-~~S~DgG~tW------~~~~~~~~~~~~~~~v~~~~-~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 258 R---TPNEVWLAGG-AGAL-LCSQDGGQTW------QQDVDVKKVPSNFYKILFFS-PD-QGFILGQKGILLRYV 319 (327)
T ss_dssp S---SSSCEEEEES-TTCE-EEESSTTSSC------EECGGGTTSSSCCCEEEEEE-TT-EEEEECSTTEEEEEC
T ss_pred c---CCCEEEEEeC-CCeE-EEeCCCCccc------EEcCccCCCCCCeEEEEEEC-CC-ceEEEcCCceEEEEc
Confidence 8 6777777665 6666 3333333211 01000012335677888764 44 466667788876654
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.32 E-value=0.21 Score=37.20 Aligned_cols=198 Identities=10% Similarity=0.005 Sum_probs=110.1
Q ss_pred EEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCe
Q 025649 27 VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV 106 (250)
Q Consensus 27 l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~ 106 (250)
.-.+|..+ .||--. ..+++++|+++.+.++.+... ..|.-=.|- +.+.|+-.+ +..
T Consensus 72 AIMnP~~~-ViALra-g~~LQiFnletK~klks~~~~--------------e~VvfWkWi-------s~~~L~lVT-~ta 127 (365)
T 2xzh_A 72 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTMT--------------DDVTFWKWI-------SLNTVALVT-DNA 127 (365)
T ss_dssp EEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEECS--------------SCEEEEEEC-------SSSEEEEEE-SSE
T ss_pred eeeCCCcc-EEEEec-CCeEEEechHHhhhhcceecC--------------CccEEEEec-------CCCeEEEEc-CCc
Confidence 33588887 676655 679999999998888887743 445544555 345555443 367
Q ss_pred EEEEeCCCceeEeec-cCC---CCCCccceeecccceeEEEeeeeeecc--Ceeee-------eeccccCccccEEEEEe
Q 025649 107 VDVINIESELNISRS-KST---TKPLKGSQSTSKVNIRDAEMEILDQSG--GKRLH-------LDYSVGGHTAAASCVAF 173 (250)
Q Consensus 107 i~~~d~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~h~~~v~~~~~ 173 (250)
|+-|++.....+... ..+ ....+..-..+++.+.++.+|...... ....+ .-+.++||...-..+..
T Consensus 128 VyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~ 207 (365)
T 2xzh_A 128 VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKM 207 (365)
T ss_dssp EEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECC
T ss_pred EEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEec
Confidence 999999864333222 211 124455566788889888766643321 11111 12345667554433333
Q ss_pred ecCCCCCcEEEEeeC---CCeEEEEecCCC-cceecccccceeeeeec---cCCceeEEEecCCCCCeEEEeeCCceEEE
Q 025649 174 SMFGERGKYLISGGN---DKLVKVWDCSRF-QGVQTSINNDLLIKNIN---LNKKVNWLCTTPTESENLVVCDTSKVVKV 246 (250)
Q Consensus 174 ~p~~~~~~~l~s~~~---d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d~~i~v 246 (250)
.-.....++++.+.. .+.+.|-++... ....... .+....+.. ..+-..++..++.. ..++.-..-|.|.+
T Consensus 208 ~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~-kk~vdi~fppea~~DFPVamqvs~ky-gviyviTK~G~ihl 285 (365)
T 2xzh_A 208 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-KKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHL 285 (365)
T ss_dssp TTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCC-CEEEEECCCTTCTTCCEEEEEEETTT-TEEEEEETTSEEEE
T ss_pred CCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc-cccceeeCCccccCCceEEEEecccC-CEEEEEeCCcEEEE
Confidence 200011234444432 258888888442 0100000 011111111 24456678888744 47888888999999
Q ss_pred EeCC
Q 025649 247 YSIS 250 (250)
Q Consensus 247 w~~~ 250 (250)
||++
T Consensus 286 yDle 289 (365)
T 2xzh_A 286 YDLE 289 (365)
T ss_dssp EETT
T ss_pred EEcc
Confidence 9974
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.22 E-value=0.4 Score=39.40 Aligned_cols=175 Identities=6% Similarity=-0.050 Sum_probs=93.6
Q ss_pred CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec
Q 025649 42 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 121 (250)
Q Consensus 42 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 121 (250)
..+.|+..++.+......+... .-....+++|.+ .++.+..+-..++.|..+++.........
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~------------~~~~~~~l~~d~-----~~~~lywtD~~~~~I~r~~~~g~~~~~v~ 75 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLT------------GVKEASALDFDV-----TDNRIYWTDISLKTISRAFMNGSALEHVV 75 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCC------------SCSCEEEEEEET-----TTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred eCCcEEEEECCCCCcceEEEcC------------CCCceEEEEEEC-----CCCEEEEEECCCCeEEEEECCCCCcEEEE
Confidence 4568899998765433333222 124577889987 23444455557789999998764333222
Q ss_pred cCCCCCCccceeecccceeEEEeee-------eeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEe-eCCCeEE
Q 025649 122 KSTTKPLKGSQSTSKVNIRDAEMEI-------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG-GNDKLVK 193 (250)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~-~~d~~i~ 193 (250)
... ......+++++.+..+..... .+. .....+.+ +...-.....+++.| ..|.++.+- +..+.|.
T Consensus 76 ~~g-~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~-dG~~~~~l--~~~~l~~P~~iavdp--~~G~lY~tD~g~~~~I~ 149 (628)
T 4a0p_A 76 EFG-LDYPEGMAVDWLGKNLYWADTGTNRIEVSKL-DGQHRQVL--VWKDLDSPRALALDP--AEGFMYWTEWGGKPKID 149 (628)
T ss_dssp CSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEET-TSTTCEEE--ECSSCCCEEEEEEET--TTTEEEEEECSSSCEEE
T ss_pred eCC-CCCcceEEEEeCCCEEEEEECCCCEEEEEec-CCCcEEEE--EeCCCCCcccEEEcc--CCCeEEEeCCCCCCEEE
Confidence 221 134667888765444431111 111 01111111 112234568999993 355555554 2356888
Q ss_pred EEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649 194 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 249 (250)
Q Consensus 194 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~ 249 (250)
..++.... . ..+...-...+.+++.+..+.+..+=...+.|...|+
T Consensus 150 r~~~dG~~---------~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 150 RAAMDGSE---------R-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EEETTSCS---------C-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCc---------e-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 88876642 1 1122234567888888744443344345667777765
No 306
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.06 E-value=0.31 Score=36.65 Aligned_cols=152 Identities=13% Similarity=0.183 Sum_probs=84.7
Q ss_pred EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC---EEEEEeC---CCeEEE
Q 025649 36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK---ICVVAKG---DGVVDV 109 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~l~~~~~---d~~i~~ 109 (250)
+++.....+-|.+||+ +|+.+..+.. ..++.+..-|.-- ..++ ++++... +++|++
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~---------------g~~nnVD~r~~~~--l~g~~~dla~as~R~~~~n~l~v 103 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT---------------GKLNNVDIRYDFP--LNGKKVDIAAASNRSEGKNTIEI 103 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC---------------SCEEEEEEEEEEE--ETTEEEEEEEEEECSTTCCEEEE
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC---------------CCcccEEEecccc--cCCceEeEEEEeCCCCCCCeEEE
Confidence 5666677789999999 7888888752 3566666665100 0222 3333333 588999
Q ss_pred EeCC--CceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEe--ecCCCCCc-EEE
Q 025649 110 INIE--SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF--SMFGERGK-YLI 184 (250)
Q Consensus 110 ~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~p~~~~~~-~l~ 184 (250)
|++. ++. +..+.... ..+..-...+..+++ +| ..+. +++
T Consensus 104 f~iDp~~~~-l~~i~~~~---------------------------------~pv~t~~~~pyGlcly~~~--~~g~~yaf 147 (355)
T 3amr_A 104 YAIDGKNGT-LQSMTDPD---------------------------------HPIATAINEVYGFTLYHSQ--KTGKYYAM 147 (355)
T ss_dssp EEECTTTCC-EEECSCTT---------------------------------SCEECCCSSCCCEEEEECT--TTCCEEEE
T ss_pred EEECCCCCc-eeeccccc---------------------------------cCcCCCCCCeeEEEEEecC--CCCcEEEE
Confidence 9774 322 11110000 000000133444555 52 2344 677
Q ss_pred EeeCCCeEEEEecCC---CcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 185 SGGNDKLVKVWDCSR---FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 185 s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
....+|.+..|++.. +... .++++.+ ...+.+-.+...+ ....|+.+-.+.-|..++
T Consensus 148 V~~k~G~~~q~~l~~~~~g~~~-----~~lVR~f-~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~d 207 (355)
T 3amr_A 148 VTGKEGEFEQYELKADKNGYIS-----GKKVRAF-KMNSQTEGMAADD-EYGRLYIAEEDEAIWKFS 207 (355)
T ss_dssp EECSSSEEEEEEEEECTTSCEE-----EEEEEEE-ECSSCEEEEEEET-TTTEEEEEETTTEEEEEE
T ss_pred EECCCCeEEEEEEEeCCCCccc-----ceEEEEe-cCCCCcceEEEcC-CCCeEEEecccceEEEEe
Confidence 777889999998843 2111 1333333 3345677777776 455788888886655554
No 307
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.95 E-value=0.54 Score=38.55 Aligned_cols=155 Identities=8% Similarity=-0.045 Sum_probs=87.3
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
..+.+|+|.+.+..++++-...+.|+.+++........+..+ -....++++.+ ..+++..+-
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~-------------~~~p~GlAvD~-----~~~~lY~tD 410 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQ-------------IAHPDGIAVDW-----VARNLYWTD 410 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-------------CSCCCEEEEET-----TTTEEEEEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECC-------------CCCcCceEEec-----ccCcEEEEe
Confidence 346789999865536666666788988888653332222211 12345667654 145555665
Q ss_pred eCCCeEEEEeCCCceeEeeccCCCCCCccceeeccc-ceeEEEeeeeeec------cCeeeeeeccccCccccEEEEEee
Q 025649 102 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV-NIRDAEMEILDQS------GGKRLHLDYSVGGHTAAASCVAFS 174 (250)
Q Consensus 102 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~h~~~v~~~~~~ 174 (250)
+..+.|.+.++......... ...-.....+++.|. |.++.+.-..... ++.....+ ....-.....++++
T Consensus 411 ~~~~~I~v~~~~G~~~~~l~-~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l--~~~~l~~P~GlalD 487 (619)
T 3s94_A 411 TGTDRIEVTRLNGTMRKILI-SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVL--VNTSLGWPNGLALD 487 (619)
T ss_dssp TTTTEEEEEETTSCSCEEEE-CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--ECSSCSCEEEEEEE
T ss_pred CCCCcEEEEeCCCCeEEEEE-ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEE--EeCCCCCCeeeEEc
Confidence 67789999998865432222 222356788999986 5555432100000 11111111 12223467889998
Q ss_pred cCCCCCc-EEEEeeCCCeEEEEecCCC
Q 025649 175 MFGERGK-YLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 175 p~~~~~~-~l~s~~~d~~i~iwd~~~~ 200 (250)
+.+. +..+-+..+.|..+++...
T Consensus 488 ---~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 488 ---YDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp ---TTTTEEEEEETTTTEEEEEESSSC
T ss_pred ---ccCCEEEEEECCCCEEEEEecCCC
Confidence 5444 4444455678999988654
No 308
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.67 E-value=0.42 Score=35.21 Aligned_cols=97 Identities=15% Similarity=0.076 Sum_probs=48.9
Q ss_pred cEEEEcccceeee-eeccCCCCCeeeEEEcCCCCeEEEEecC-----C------CeEEEEEccCCCCccceecCCCCCCC
Q 025649 2 WQIIDIRQHCLYK-SLRAGHSSICSSVQFIPWKPWEVISGGL-----D------SKLVMWDFSKGRPNKIVNFGLPENNG 69 (250)
Q Consensus 2 i~iwd~~~~~~~~-~l~~~h~~~v~~l~~~~~~~~~l~s~s~-----d------g~v~iwd~~~~~~~~~~~~~~~~~~~ 69 (250)
+.+||+.+++-.. .+. ........-....++. +++.|+. . ..+..||..+.+-...-...
T Consensus 15 ~~~yd~~~~~W~~~~~~-~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p------ 86 (315)
T 4asc_A 15 AVAYDPAANECYCASLS-SQVPKNHVSLVTKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLP------ 86 (315)
T ss_dssp EEEEETTTTEEEEEECC-CCSCSSEEEEECTTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBS------
T ss_pred eEEECCCCCeEecCCCC-CCCCccceEEEEECCE-EEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCC------
Confidence 4678888776432 222 2222223333345666 6777763 1 12677888765432111100
Q ss_pred CCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC--------CeEEEEeCCCceeEe
Q 025649 70 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD--------GVVDVINIESELNIS 119 (250)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~ 119 (250)
.+..-++++.. ++++++.|+.+ ..+.+||..+.+...
T Consensus 87 ------~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~ 131 (315)
T 4asc_A 87 ------SPRCLFGLGEA-------LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE 131 (315)
T ss_dssp ------SCEESCEEEEE-------TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE
T ss_pred ------cchhceeEEEE-------CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE
Confidence 11111222222 56777777642 468899998876543
No 309
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.27 E-value=1.7 Score=39.43 Aligned_cols=198 Identities=9% Similarity=-0.011 Sum_probs=105.8
Q ss_pred EEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeE
Q 025649 28 QFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 107 (250)
Q Consensus 28 ~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i 107 (250)
-.+|..+ .++--. ..++.|+|+++.+.++.+... ..|.-=.|- +.+.|+-.+ +..|
T Consensus 72 IMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~~--------------e~VvfWkWi-------s~~~l~lVT-~~aV 127 (1630)
T 1xi4_A 72 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTMT--------------DDVTFWKWI-------SLNTVALVT-DNAV 127 (1630)
T ss_pred ccCCCcc-eEEEec-CCeEEEeehHHhhhhcccccC--------------CCceEEEec-------CCCeeEEEc-CCeE
Confidence 3678777 666554 679999999988877777633 344444444 334444443 4679
Q ss_pred EEEeCCCceeEeeccCCC----CCCccceeecccceeEEEeeeeee--ccCeeee-------eeccccCccccEEEEEee
Q 025649 108 DVINIESELNISRSKSTT----KPLKGSQSTSKVNIRDAEMEILDQ--SGGKRLH-------LDYSVGGHTAAASCVAFS 174 (250)
Q Consensus 108 ~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~h~~~v~~~~~~ 174 (250)
.-|++.....+......+ ...|..-..+++.+.++.+|.... ......+ .-+.+.||.+.-..+...
T Consensus 128 yHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~ 207 (1630)
T 1xi4_A 128 YHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKME 207 (1630)
T ss_pred EEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccC
Confidence 999997644333222211 245555667888888886665322 1211111 223455665544444332
Q ss_pred cCCCCCcEEEEeeC---CCeEEEEecCCC---cceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 175 MFGERGKYLISGGN---DKLVKVWDCSRF---QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 175 p~~~~~~~l~s~~~---d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
...+..+.++.+.. .+.+.|-++... ..............-..-.....++..++..| .+..-..-|.|.+||
T Consensus 208 ~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d 286 (1630)
T 1xi4_A 208 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYD 286 (1630)
T ss_pred CCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEe
Confidence 11012233333322 268888887543 11100000011000011234456777777444 677788889999999
Q ss_pred CC
Q 025649 249 IS 250 (250)
Q Consensus 249 ~~ 250 (250)
++
T Consensus 287 ~~ 288 (1630)
T 1xi4_A 287 LE 288 (1630)
T ss_pred cc
Confidence 74
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=95.25 E-value=1.1 Score=38.86 Aligned_cols=36 Identities=25% Similarity=0.132 Sum_probs=30.1
Q ss_pred ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee
Q 025649 166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 204 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 204 (250)
..+.+++.. ++..++++-+.|+++|+|++.+++++.
T Consensus 236 ~~~~~~~~~---~~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 236 NTIISMIFL---STYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp TCEEEEEEE---TTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred ceEEEEeec---CCCcEEEEEECCCEEEEEECCCCCeEe
Confidence 356677777 778899999999999999999987654
No 311
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.25 E-value=0.68 Score=34.88 Aligned_cols=112 Identities=9% Similarity=-0.012 Sum_probs=65.0
Q ss_pred CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC---CC
Q 025649 20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT---NK 96 (250)
Q Consensus 20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~ 96 (250)
.-..-..|+|.|+|. ++++--..|.|++++..+++........ ............++++| + +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~-------~v~~~g~~GllGia~~P------df~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVP-------GVSPSGEGGLLGIALSP------DYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECT-------TCCCBTTBSEEEEEECT------THHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccC-------ceeecCCCCceeeEecc------ccccCC
Confidence 344567999999998 7777666899999987655432111100 00011235678899998 4 34
Q ss_pred EEEEE---eCCCeEEEEeCCCc----------eeEe-eccCCCCCCccceeecccceeEEEee
Q 025649 97 ICVVA---KGDGVVDVINIESE----------LNIS-RSKSTTKPLKGSQSTSKVNIRDAEME 145 (250)
Q Consensus 97 ~l~~~---~~d~~i~~~d~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (250)
.|.+. ..++.|.-|.+..+ +.+. .+.......-..+.|.|||.++++.+
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 44433 24556666665541 1111 12222223456799999998887654
No 312
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.23 E-value=0.49 Score=33.12 Aligned_cols=75 Identities=9% Similarity=-0.056 Sum_probs=41.5
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
..+++++|+|+|. +.+. .+|.+.-.+..+.+...-+... . ..... --....++.|.| ++.+.++
T Consensus 41 ~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~-t-~IG~~----Gw~~F~a~~fD~------~G~LYav- 104 (236)
T 1tl2_A 41 SNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRA-K-KIGNG----GWNQFQFLFFDP------NGYLYAV- 104 (236)
T ss_dssp TTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHC-E-EEECS----CGGGCSEEEECT------TSCEEEE-
T ss_pred ccceeEEECCCcc-EEEE--eCCeEEEECCCCCCcccccccc-c-Eeccc----ccccceEEEECC------CCCEEEe-
Confidence 4788999999987 4444 6777665555443322111100 0 00000 001125666776 8888777
Q ss_pred eCCCeEEEEeCC
Q 025649 102 KGDGVVDVINIE 113 (250)
Q Consensus 102 ~~d~~i~~~d~~ 113 (250)
.||.|.-++..
T Consensus 105 -~dG~iyr~~pP 115 (236)
T 1tl2_A 105 -SKDKLYKASPP 115 (236)
T ss_dssp -ETTEEEEESCC
T ss_pred -CCCEEEEeCCC
Confidence 56988877754
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.22 E-value=0.61 Score=35.23 Aligned_cols=106 Identities=9% Similarity=-0.005 Sum_probs=61.0
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC---CCEE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT---NKIC 98 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~l 98 (250)
.....|+|.|+|+ ++++ ..+|.|+++|. +++ ..+. ..+ ...........++++| + +..|
T Consensus 29 ~~P~~ia~~pdG~-l~V~-e~~g~I~~~d~-~G~--~~~~-~~~------v~~~g~~g~~gia~~p------df~~~g~l 90 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVT-ERPGRLVLISP-SGK--KLVA-SFD------VANVGEAGLLGLALHP------EFPKKSWV 90 (354)
T ss_dssp SCEEEEEEEETTE-EEEE-ETTTEEEEECS-SCE--EEEE-ECC------CCCSTTCSEEEEEECT------TTTTSCEE
T ss_pred CCCeEEEEcCCCe-EEEE-eCCCEEEEEeC-CCc--eEee-ccc------eeecCCCceeeEEeCC------CCCcCCEE
Confidence 4567999999997 5555 55599998873 454 2221 000 0000124578899998 5 4455
Q ss_pred EEEeC----C----CeEEEEeCCCc-------eeEee-ccCCCCCCccceeecccceeEEEee
Q 025649 99 VVAKG----D----GVVDVINIESE-------LNISR-SKSTTKPLKGSQSTSKVNIRDAEME 145 (250)
Q Consensus 99 ~~~~~----d----~~i~~~d~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (250)
.++.. + +.|..|+.... +.+.. +..........++|.|||.++++.+
T Consensus 91 yv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 91 YLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 44433 3 67778877653 11111 2211123456799999998777543
No 314
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.13 E-value=0.75 Score=34.76 Aligned_cols=198 Identities=15% Similarity=0.101 Sum_probs=100.5
Q ss_pred CCCeeeEEEcCCCCeEEEEec------------CCCeEEEEEccCCC-CccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649 21 SSICSSVQFIPWKPWEVISGG------------LDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD 87 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s------------~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 87 (250)
.....++...|+|. .+++++ .+|.|.++|+++.. ....+..... ..... .-..+.+.+.+
T Consensus 49 ~~G~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~---~~~~~---~f~PhGi~~~~ 121 (355)
T 3sre_A 49 DNGSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN---TLDIS---SFNPHGISTFI 121 (355)
T ss_dssp CSCCCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS---SCCGG---GCCEEEEEEEE
T ss_pred CCCcceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC---CCCcC---ceeeeeeEEEE
Confidence 34567888899875 455542 68999999987431 2223332100 00000 11345555533
Q ss_pred CcccCCCCC-EEEEE-eC--CCeEEEEeCCCc--ee--EeeccCCCCCCccceeecccceeEEEeeeeeec---------
Q 025649 88 ADMLDKTNK-ICVVA-KG--DGVVDVINIESE--LN--ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS--------- 150 (250)
Q Consensus 88 ~~~~~~~~~-~l~~~-~~--d~~i~~~d~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 150 (250)
+.++. +|+++ .. +.+|.+|++..+ .. ........-.....+.+.++|.++++...+-..
T Consensus 122 ----d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~ 197 (355)
T 3sre_A 122 ----DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH 197 (355)
T ss_dssp ----CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHH
T ss_pred ----CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhh
Confidence 11343 34444 33 567888776542 22 223333333567789999999877643222100
Q ss_pred -cCeeeeee-------ccccCccccEEEEEeecCCCCCcEEEEe-eCCCeEEEEecCCCcceecccccceeeeeeccCCc
Q 025649 151 -GGKRLHLD-------YSVGGHTAAASCVAFSMFGERGKYLISG-GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 221 (250)
Q Consensus 151 -~~~~~~~~-------~~~~~h~~~v~~~~~~p~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (250)
........ ..+...-...+.++|+ |+++.|..+ +..+.|..||+....... ....+ .....
T Consensus 198 ~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~s---pDg~~lYvadt~~~~I~~~~~~~~g~l~------~~~~~-~~~g~ 267 (355)
T 3sre_A 198 LGLAWSFVTYYSPNDVRVVAEGFDFANGINIS---PDGKYVYIAELLAHKIHVYEKHANWTLT------PLRVL-SFDTL 267 (355)
T ss_dssp TTCCCEEEEEECTTCCEEEEEEESSEEEEEEC---TTSSEEEEEEGGGTEEEEEEECTTSCEE------EEEEE-ECSSE
T ss_pred ccCCccEEEEEECCeEEEeecCCcccCcceEC---CCCCEEEEEeCCCCeEEEEEECCCCcEe------cCEEE-eCCCC
Confidence 00001110 1111112345789999 898766655 457899999987421111 11111 22455
Q ss_pred eeEEEecCCCCCeEEEee
Q 025649 222 VNWLCTTPTESENLVVCD 239 (250)
Q Consensus 222 v~~~~~~~~~~~~l~s~~ 239 (250)
.-.+++.+.+|.+.+++.
T Consensus 268 PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 268 VDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp EEEEEECTTTCCEEEEEE
T ss_pred CceEEEeCCCCcEEEEec
Confidence 667777652376666554
No 315
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.93 E-value=0.84 Score=34.25 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=8.9
Q ss_pred CeEEEEEccCCC
Q 025649 44 SKLVMWDFSKGR 55 (250)
Q Consensus 44 g~v~iwd~~~~~ 55 (250)
..+.+||+.+.+
T Consensus 168 ~~v~~yd~~~~~ 179 (357)
T 2uvk_A 168 KFLLSFDPSTQQ 179 (357)
T ss_dssp CEEEEEETTTTE
T ss_pred ccEEEEeCCCCc
Confidence 478888887654
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.87 E-value=1 Score=35.07 Aligned_cols=199 Identities=10% Similarity=0.004 Sum_probs=110.5
Q ss_pred eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC
Q 025649 26 SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 105 (250)
Q Consensus 26 ~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~ 105 (250)
+.-.+|..+ .|+--. ..++.++|+++.+.++.+... ..|.-=.|- +.+.|+-.+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~~--------------e~VvfWkWi-------s~~~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTMT--------------DDVTFWKWI-------SLNTVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEECS--------------SCCCEEEEE-------ETTEEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceecC--------------CCceEEEec-------CCCeEEEEc-CC
Confidence 344688887 666654 679999999998888777643 334333343 345555543 46
Q ss_pred eEEEEeCCCceeEeeccCC----CCCCccceeecccceeEEEeeeeeecc--Ceeee-------eeccccCccccEEEEE
Q 025649 106 VVDVINIESELNISRSKST----TKPLKGSQSTSKVNIRDAEMEILDQSG--GKRLH-------LDYSVGGHTAAASCVA 172 (250)
Q Consensus 106 ~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~h~~~v~~~~ 172 (250)
.|+-|++.....+...... ....|..-..+++.+.++.+|...... ....+ .-+.++||...-..+.
T Consensus 126 aVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~ 205 (494)
T 1bpo_A 126 AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFK 205 (494)
T ss_dssp EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEE
T ss_pred eeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEe
Confidence 7999999764333222211 124555566788899888766643321 11111 1235667766554444
Q ss_pred eecCCCCCcEEEEeeC---CCeEEEEecCCCc-ceecccccceeeeee---ccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649 173 FSMFGERGKYLISGGN---DKLVKVWDCSRFQ-GVQTSINNDLLIKNI---NLNKKVNWLCTTPTESENLVVCDTSKVVK 245 (250)
Q Consensus 173 ~~p~~~~~~~l~s~~~---d~~i~iwd~~~~~-~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 245 (250)
..-.....++++.+.. .+.+.|-++.... ...... .+....+. .-.+-..++..++.. ..++.-..-|.|.
T Consensus 206 ~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~-kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~ 283 (494)
T 1bpo_A 206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-KKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIH 283 (494)
T ss_dssp CTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC-CEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEE
T ss_pred cCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc-ceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEE
Confidence 3200011234444443 2788888885430 000000 01111111 223456678888744 4778888899999
Q ss_pred EEeCC
Q 025649 246 VYSIS 250 (250)
Q Consensus 246 vw~~~ 250 (250)
+||++
T Consensus 284 lyDle 288 (494)
T 1bpo_A 284 LYDLE 288 (494)
T ss_dssp EEETT
T ss_pred EEecc
Confidence 99974
No 317
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.82 E-value=0.87 Score=33.87 Aligned_cols=154 Identities=10% Similarity=0.010 Sum_probs=82.5
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 98 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 98 (250)
++...+..+.+.+++. +++.+...+..+-+|- .++.-..+... ....+..+.+.+ ++..+
T Consensus 160 ~~~~~~~~~~~~~~~~-~~~~g~~G~~~~S~d~-gG~tW~~~~~~------------~~~~~~~~~~~~------~g~~~ 219 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGE-YVAVSSRGSFYSTWEP-GQTAWEPHNRT------------TSRRLHNMGFTP------DGRLW 219 (327)
T ss_dssp SCCCCEEEEEECTTSC-EEEEETTSSEEEEECT-TCSSCEEEECC------------SSSCEEEEEECT------TSCEE
T ss_pred CCCcceEEEEEcCCCc-EEEEECCCcEEEEeCC-CCCceeECCCC------------CCCccceeEECC------CCCEE
Confidence 4456788999999887 6666654444444442 12322222212 245678888887 67655
Q ss_pred EEEeCCCeEEEEeCCCceeEeeccCC---CCCCccceeecccceeEEEee---eeeecc-CeeeeeeccccCccccEEEE
Q 025649 99 VVAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNIRDAEME---ILDQSG-GKRLHLDYSVGGHTAAASCV 171 (250)
Q Consensus 99 ~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~h~~~v~~~ 171 (250)
+ ++.+|.+++.+...++.-.....+ ....+..+.+.+++..++... .+...+ ...-+.+.........+.++
T Consensus 220 ~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v 298 (327)
T 2xbg_A 220 M-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKI 298 (327)
T ss_dssp E-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEEESSTTSSCEECGGGTTSSSCCCEE
T ss_pred E-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEEEeCCCCcccEEcCccCCCCCCeEEE
Confidence 4 456788777654434433222222 123467788888777666311 111111 12222222111223457888
Q ss_pred EeecCCCCCcEEEEeeCCCeEEEEec
Q 025649 172 AFSMFGERGKYLISGGNDKLVKVWDC 197 (250)
Q Consensus 172 ~~~p~~~~~~~l~s~~~d~~i~iwd~ 197 (250)
.|. ++++ ++.++.+|.|.-++-
T Consensus 299 ~~~---~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 299 LFF---SPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EEE---ETTE-EEEECSTTEEEEECC
T ss_pred EEE---CCCc-eEEEcCCceEEEEcC
Confidence 887 5555 555566888777664
No 318
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.55 E-value=0.98 Score=33.27 Aligned_cols=27 Identities=26% Similarity=0.100 Sum_probs=18.5
Q ss_pred CCCEEEEEeCC-------CeEEEEeCCCceeEee
Q 025649 94 TNKICVVAKGD-------GVVDVINIESELNISR 120 (250)
Q Consensus 94 ~~~~l~~~~~d-------~~i~~~d~~~~~~~~~ 120 (250)
++++++.|+.+ ..+.+||..+.+....
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 142 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV 142 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC
Confidence 56777777754 3588899988765443
No 319
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.46 E-value=1.1 Score=33.57 Aligned_cols=111 Identities=12% Similarity=-0.024 Sum_probs=62.0
Q ss_pred cEEEEcccceeeeeeccCC-CCCeeeEEE--cCCCCeEEEEe-cCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649 2 WQIIDIRQHCLYKSLRAGH-SSICSSVQF--IPWKPWEVISG-GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 77 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h-~~~v~~l~~--~~~~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|.-.|.++|+.+.+++ .. ..++....- .+.+...++.. +.||.|..++..+|.....+.... . ...
T Consensus 22 l~Ald~~tG~~~W~~~-~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~--------l-v~~ 91 (339)
T 2be1_A 22 LHAVDRRNGHIIWSIE-PENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ--------L-VST 91 (339)
T ss_dssp EEEEETTTTEEEEEEC-GGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH--------H-HTT
T ss_pred EEEEECCCCcEEEEec-CCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc--------c-eec
Confidence 4556777899888887 32 122222110 01122244444 689999999998885444333210 0 000
Q ss_pred CceeEEecCCCcccCC----CCCEEEEEeCCCeEEEEeCCCceeEeeccCC
Q 025649 78 AFVHAIAIPDADMLDK----TNKICVVAKGDGVVDVINIESELNISRSKST 124 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 124 (250)
.++.. .-.|+. .+. .+..+++|+.+|.+...|+++|+.+......
T Consensus 92 SP~~~-~~~pvv-~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 92 SPLHL-KTNIVV-NDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp CSEEE-ECC-----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccccc-CCCcee-ecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 11111 111100 000 4668899999999999999999998876654
No 320
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.41 E-value=1.2 Score=33.61 Aligned_cols=106 Identities=9% Similarity=0.024 Sum_probs=61.1
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC---CCEE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT---NKIC 98 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~l 98 (250)
..-..++|.|+|+ ++++ ..+|.|++++ +++. ..+. ..+ ...........++++| + +..|
T Consensus 31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~-~~~~-~~~------v~~~g~~~p~gia~~p------df~~~g~l 92 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRL-STYA-ELS------VYHRGESGLLGLALHP------RFPQEPYV 92 (352)
T ss_dssp SCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEE-EEEE-ECC------CCCSTTCSEEEEEECT------TTTTSCEE
T ss_pred CCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCc-cEee-cce------EeecCCCCceeEEECC------CCCCCCEE
Confidence 3457999999998 5555 4569999998 3432 1111 000 0000134578899998 6 4555
Q ss_pred EEEeC-C-----CeEEEEeCCCce-----eEee-cc--CCCCCCccceeecccceeEEEee
Q 025649 99 VVAKG-D-----GVVDVINIESEL-----NISR-SK--STTKPLKGSQSTSKVNIRDAEME 145 (250)
Q Consensus 99 ~~~~~-d-----~~i~~~d~~~~~-----~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~ 145 (250)
.++.. . +.|..++...+. .+.. +. .........++|.|+|.++++.+
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 54433 2 678888877531 1111 22 11123446899999997777543
No 321
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.40 E-value=1.9 Score=35.95 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=36.9
Q ss_pred CCCeEEEEecCC------CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC
Q 025649 32 WKPWEVISGGLD------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 105 (250)
Q Consensus 32 ~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~ 105 (250)
++. +++.|+.+ ..+.+||..+.+-...-... .+..-++++... ++++++.|+.++
T Consensus 451 ~~~-lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p------------~~R~~h~~~~~~------~~~iyv~GG~~~ 511 (695)
T 2zwa_A 451 NNQ-LLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS------------HTRFRHSACSLP------DGNVLILGGVTE 511 (695)
T ss_dssp TTE-EEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS------------BCCBSCEEEECT------TSCEEEECCBCS
T ss_pred CCE-EEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC------------CCcccceEEEEc------CCEEEEECCCCC
Confidence 666 77777654 34778888764322111100 122223344322 678888887654
Q ss_pred --eEEEEeCCCce
Q 025649 106 --VVDVINIESEL 116 (250)
Q Consensus 106 --~i~~~d~~~~~ 116 (250)
.+.+||..+..
T Consensus 512 ~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 512 GPAMLLYNVTEEI 524 (695)
T ss_dssp SCSEEEEETTTTE
T ss_pred CCCEEEEECCCCc
Confidence 68888888654
No 322
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.24 E-value=1.3 Score=33.22 Aligned_cols=96 Identities=13% Similarity=0.181 Sum_probs=64.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+++|+|+++.+.++.+. ....|..-.|-.... |+-.+ +..|.-|++.. ..+.+.+..+. . .....
T Consensus 88 ~LQiFnletK~klks~~--~~e~VvfWkWis~~~--L~lVT-~taVyHWs~~~~s~P~kvFdR~~-------~--L~~~Q 153 (365)
T 2xzh_A 88 TLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNT--VALVT-DNAVYHWSMEGESQPVKMFDRHS-------S--LAGCQ 153 (365)
T ss_dssp EEEEEETTTTEEEEEEE--CSSCEEEEEECSSSE--EEEEE-SSEEEEEESSTTCCCEEEEECCG-------G--GTTCE
T ss_pred eEEEechHHhhhhccee--cCCccEEEEecCCCe--EEEEc-CCcEEEEcccCCCCCceeeecch-------h--cccce
Confidence 47899999998888887 456788888876654 43333 24799999974 35555555321 0 12356
Q ss_pred eeEEecCCCcccCCCCCEEEEEe-------CCCeEEEEeCCCce
Q 025649 80 VHAIAIPDADMLDKTNKICVVAK-------GDGVVDVINIESEL 116 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~-------~d~~i~~~d~~~~~ 116 (250)
|.....++ +.++++..+ -.|.+.+|..+.+.
T Consensus 154 IInY~~d~------~~kW~~l~GI~~~~~~v~G~mQLYS~er~~ 191 (365)
T 2xzh_A 154 IINYRTDA------KQKWLLLTGISAQQNRVVGAMQLYSVDRKV 191 (365)
T ss_dssp EEEEEECT------TSCEEEEEEEEEETTEEEEEEEEEETTTTE
T ss_pred EEEEEECC------CCCEEEEEeEeccCCccceeEEEEeecccc
Confidence 77777777 777765553 23778899998754
No 323
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.08 E-value=0.35 Score=38.84 Aligned_cols=74 Identities=12% Similarity=-0.033 Sum_probs=51.7
Q ss_pred CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC------CC-------ccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649 21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG------RP-------NKIVNFGLPENNGNAGQCYNPAFVHAIAIPD 87 (250)
Q Consensus 21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~------~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 87 (250)
......+.++|||+..+++|-.+.++.++|++.. +. ....+.+ ..-...+|.+
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G--------------lGPlHt~Fd~ 387 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG--------------LGPLHTTFDG 387 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC--------------SCEEEEEECS
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC--------------CcccEEEECC
Confidence 3455789999999977777788999999999742 11 1111111 2334567776
Q ss_pred CcccCCCCCEEEEEeCCCeEEEEeCCC
Q 025649 88 ADMLDKTNKICVVAKGDGVVDVINIES 114 (250)
Q Consensus 88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~ 114 (250)
+|+...+..-|..|..|++..
T Consensus 388 ------~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 388 ------RGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp ------SSEEEEEETTTTEEEEEEHHH
T ss_pred ------CCceEeeeeecceEEEEeccH
Confidence 886666667899999999975
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.88 E-value=1.9 Score=33.90 Aligned_cols=112 Identities=6% Similarity=-0.001 Sum_probs=62.5
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC---CCEE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT---NKIC 98 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~l 98 (250)
.....|+|.|+|+ ++++-...+.|++++..+++......+.. .............++++| + +..|
T Consensus 27 ~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~-----~~~~~~g~~Gllgia~~P------df~~~g~l 94 (454)
T 1cru_A 27 NKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPE-----IVNDADGQNGLLGFAFHP------DFKNNPYI 94 (454)
T ss_dssp SSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTT-----CCCCTTSSCSEEEEEECT------TTTTSCEE
T ss_pred CCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCc-----cccccCCCCceeEEEECC------CcCcCCEE
Confidence 3557999999998 67765554578888765554322111110 000000134567899998 4 5555
Q ss_pred EEEeC-------------CCeEEEEeCCCc-------eeEee-ccCCCCCCccceeecccceeEEEee
Q 025649 99 VVAKG-------------DGVVDVINIESE-------LNISR-SKSTTKPLKGSQSTSKVNIRDAEME 145 (250)
Q Consensus 99 ~~~~~-------------d~~i~~~d~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (250)
.++.. ...|.-++...+ +.+.. +..........+.|.|||.++++.+
T Consensus 95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 55442 235666655321 11111 2222224567899999998887655
No 325
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=92.90 E-value=2 Score=31.34 Aligned_cols=171 Identities=9% Similarity=-0.011 Sum_probs=79.3
Q ss_pred cEEEEcccceee--eeeccCCCCCeeeEEEcCCCCeEEEEecCC------CeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649 2 WQIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGLD------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 2 i~iwd~~~~~~~--~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 73 (250)
+.++|+.+++-. ..+. .....-..+.+ ++. +++.|+.+ ..+.+||..+.+-...-...
T Consensus 72 ~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p---------- 137 (306)
T 3ii7_A 72 MDCYNVVKDSWYSKLGPP-TPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRTESWHTKPSML---------- 137 (306)
T ss_dssp EEEEETTTTEEEEEECCS-SCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS----------
T ss_pred EEEEeCCCCeEEECCCCC-ccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc----------
Confidence 456787766532 2232 11112222222 455 67777755 45888898766432211101
Q ss_pred ccCCCceeEEecCCCcccCCCCCEEEEEeC---------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe
Q 025649 74 CYNPAFVHAIAIPDADMLDKTNKICVVAKG---------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 144 (250)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (250)
.+..-++++.. ++++++.|+. -..+.+||+.+.+.......+. .........-+++.++ .
T Consensus 138 --~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v-~ 206 (306)
T 3ii7_A 138 --TQRCSHGMVEA-------NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFVKDKIFA-V 206 (306)
T ss_dssp --SCCBSCEEEEE-------TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEE-E
T ss_pred --CCcceeEEEEE-------CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEECCEEEE-E
Confidence 11112222222 5677777753 3558899999876544332221 2222222223555554 4
Q ss_pred eeeeecc-----------CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC-----CeEEEEecCCCcc
Q 025649 145 EILDQSG-----------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-----KLVKVWDCSRFQG 202 (250)
Q Consensus 145 ~~~~~~~-----------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d-----~~i~iwd~~~~~~ 202 (250)
|..+... ...-+.+..+........++.+ ++.+++.|+.+ ..+.+||..+.+.
T Consensus 207 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-----~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 207 GGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-----GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp CCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-----TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred eCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-----CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 4332210 0111111122211222222222 46777777744 4688899888643
No 326
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.74 E-value=1 Score=33.75 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=43.0
Q ss_pred EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE-eCCCeEEEEeCCC
Q 025649 36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIES 114 (250)
Q Consensus 36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~ 114 (250)
+++.++.||.|.-.|..+|+.+..++.. ...++.... .+.. ..++..++.. +.||.|..++..+
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~------------~~~p~~~~~-~~~~--~~~~~~~vv~p~~dG~l~a~~~~~ 76 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPE------------NFQPLIEIQ-EPSR--LETYETLIIEPFGDGNIYYFNAHQ 76 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGG------------GSCCSEECC-CSCT--TTSSEEEEECCSTTTEEEEEETTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCC------------ccCCcEEec-CCcc--ccCCcEEEEEECCCCEEEEEECCC
Confidence 7889999999999999999988888633 000111110 0100 0133444444 6899999999987
Q ss_pred ceeE
Q 025649 115 ELNI 118 (250)
Q Consensus 115 ~~~~ 118 (250)
|...
T Consensus 77 G~~~ 80 (339)
T 2be1_A 77 GLQK 80 (339)
T ss_dssp EEEE
T ss_pred CcEE
Confidence 7543
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.53 E-value=3.1 Score=32.59 Aligned_cols=180 Identities=10% Similarity=0.110 Sum_probs=97.4
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+++|+|+++.+.++.+. ....|..-.|-.... |+-.+ +..|.-|++.. ..+++.+..+. . .....
T Consensus 87 ~lQiFnle~K~klks~~--~~e~VvfWkWis~~~--l~lVT-~taVyHWsi~~~s~P~kvFdR~~-------~--L~~~Q 152 (494)
T 1bpo_A 87 TLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNT--VALVT-DNAVYHWSMEGESQPVKMFDRHS-------S--LAGCQ 152 (494)
T ss_dssp EEEEEETTTTEEEEEEE--CSSCCCEEEEEETTE--EEEEC-SSEEEEEESSSSCCCEEEEECCG-------G--GTTCE
T ss_pred eEEEEchHHhhhhccee--cCCCceEEEecCCCe--EEEEc-CCeeEEecccCCCCchhheecch-------h--cccce
Confidence 47899999988888887 455677777766553 44444 34899999974 34555665321 0 12356
Q ss_pred eeEEecCCCcccCCCCCEEEEEe-------CCCeEEEEeCCCceeEeeccC---------C---CCCCccceeec-ccce
Q 025649 80 VHAIAIPDADMLDKTNKICVVAK-------GDGVVDVINIESELNISRSKS---------T---TKPLKGSQSTS-KVNI 139 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~---------~---~~~~~~~~~~~-~~~~ 139 (250)
|.....++ +.++++..+ -.|.+.+|..+.+......-. . ....+.+.+.. +.|.
T Consensus 153 IInY~~d~------~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~ 226 (494)
T 1bpo_A 153 IINYRTDA------KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 226 (494)
T ss_dssp EEEEEECT------TSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCC
T ss_pred EEEEEECC------CCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence 77777777 788776543 247788999886543221100 0 00111111111 1111
Q ss_pred eEEEeeeeee-ccC-----eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649 140 RDAEMEILDQ-SGG-----KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV 203 (250)
Q Consensus 140 ~~~~~~~~~~-~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 203 (250)
.+-....... ... +.......-..-.+-..++..+ +....+..-..-|.|.+||+.++.+.
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs---~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS---EKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE---TTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec---ccCCEEEEEecCceEEEEecccceee
Confidence 1110110000 000 0000001111223345677778 56667777778899999999999544
No 328
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=92.16 E-value=6.1 Score=35.20 Aligned_cols=102 Identities=10% Similarity=0.078 Sum_probs=60.5
Q ss_pred cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649 2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 81 (250)
Q Consensus 2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (250)
|++.+...++.+...+......|...+.+. . .++.++ ++.+.++++..++.....+.. .+..|.
T Consensus 494 Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~-~vvva~-g~~l~~fel~~~~L~~~~~~~------------l~~evs 557 (1158)
T 3ei3_A 494 VRLVSQEPKALVSEWKEPQAKNISVASCNS--S-QVVVAV-GRALYYLQIHPQELRQISHTE------------MEHEVA 557 (1158)
T ss_dssp EEEEESSSCCEEEEECCTTCCCCCEEEECS--S-EEEEEE-TTEEEEEEEETTEEEEEEEEE------------CSSCEE
T ss_pred EEEEECCCCeEEEEEECCCCCEEEEEEeCC--C-EEEEEE-CCEEEEEEeeCCceeeecccC------------CCCceE
Confidence 566665544455555512233566666554 3 454444 578888888765322111111 245789
Q ss_pred EEecCCCcccCCCCCEEEEEeC-CCeEEEEeCCCceeEe
Q 025649 82 AIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNIS 119 (250)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~ 119 (250)
|+++.|..--...+.++++|.. |++++++++...+...
T Consensus 558 cl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~ 596 (1158)
T 3ei3_A 558 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH 596 (1158)
T ss_dssp EEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence 9999873111113579999996 9999999998755443
No 329
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=91.96 E-value=3.1 Score=31.34 Aligned_cols=53 Identities=11% Similarity=-0.044 Sum_probs=32.2
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee--Eeec---cCCCCCCccceeeccc
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN--ISRS---KSTTKPLKGSQSTSKV 137 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~---~~~~~~~~~~~~~~~~ 137 (250)
....+++.| +++.|+++...|.|++++...... .... ..........++++|+
T Consensus 19 ~P~~i~~~p------dG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 19 HPWALAFLP------DNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SEEEEEECS------TTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CcEEEEEcC------CCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence 457889998 888344555779999998643211 1111 1111235578999995
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.77 E-value=7.6 Score=35.47 Aligned_cols=96 Identities=13% Similarity=0.175 Sum_probs=59.8
Q ss_pred CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCc
Q 025649 1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAF 79 (250)
Q Consensus 1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+++|+|+++.+.++.+. ...+|..-.|-.... |+-.+ +..|.-|++.. ..+++.+..+.. . ....
T Consensus 87 ~lQiFnl~~k~klks~~--~~e~VvfWkWis~~~--l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~-------L--~~~Q 152 (1630)
T 1xi4_A 87 TLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNT--VALVT-DNAVYHWSMEGESQPVKMFDRHSS-------L--AGCQ 152 (1630)
T ss_pred eEEEeehHHhhhhcccc--cCCCceEEEecCCCe--eEEEc-CCeEEEeccCCCCccHHHHhcchh-------c--ccCe
Confidence 57889988887777776 455677777766554 43333 24799999964 345555542210 0 1345
Q ss_pred eeEEecCCCcccCCCCCEEEEEe-------CCCeEEEEeCCCce
Q 025649 80 VHAIAIPDADMLDKTNKICVVAK-------GDGVVDVINIESEL 116 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~-------~d~~i~~~d~~~~~ 116 (250)
|.+...++ +.++++..+ -.|.+.+|..+.+.
T Consensus 153 IinY~~d~------~~kW~~l~gi~~~~~~v~G~mQLyS~er~~ 190 (1630)
T 1xi4_A 153 IINYRTDA------KQKWLLLTGISAQQNRVVGAMQLYSVDRKV 190 (1630)
T ss_pred eEEeeeCC------CCCeEEEEeeccCCCcccceeeeeeccccc
Confidence 66666666 777665443 34788899887643
No 331
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=91.73 E-value=2.8 Score=30.42 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=38.3
Q ss_pred CCCeEEEEecCC-----CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC--
Q 025649 32 WKPWEVISGGLD-----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-- 104 (250)
Q Consensus 32 ~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-- 104 (250)
++. +++.|+.+ ..+.+||+.+.+-...-... .+..-+++... ++++++.|+.+
T Consensus 112 ~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p------------~~r~~~~~~~~-------~~~iyv~GG~~~~ 171 (301)
T 2vpj_A 112 GDM-IYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ------------TAREGAGLVVA-------SGVIYCLGGYDGL 171 (301)
T ss_dssp TTE-EEEECCBCSSCBCCEEEEEETTTTEEEEEEECS------------SCCBSCEEEEE-------TTEEEEECCBCSS
T ss_pred CCE-EEEEcccCCCcccceEEEEcCCCCeEEECCCCC------------CCcccceEEEE-------CCEEEEECCCCCC
Confidence 455 67777654 35888888765432221111 11111222222 56777777654
Q ss_pred ---CeEEEEeCCCceeEee
Q 025649 105 ---GVVDVINIESELNISR 120 (250)
Q Consensus 105 ---~~i~~~d~~~~~~~~~ 120 (250)
..+.+||+.+.+....
T Consensus 172 ~~~~~~~~~d~~~~~W~~~ 190 (301)
T 2vpj_A 172 NILNSVEKYDPHTGHWTNV 190 (301)
T ss_dssp CBCCCEEEEETTTTEEEEE
T ss_pred cccceEEEEeCCCCcEEeC
Confidence 4688999988765543
No 332
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=91.40 E-value=3.6 Score=31.01 Aligned_cols=68 Identities=18% Similarity=0.146 Sum_probs=39.5
Q ss_pred ccEEEEEeec---C-CCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649 166 AAASCVAFSM---F-GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 239 (250)
Q Consensus 166 ~~v~~~~~~p---~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 239 (250)
.....++|.. | ..+|.++++.-..+.|...++....... .....+.+-...+..+++.| ||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~-----~~~~~~~~~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVR-----KISTFFKNVFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEE-----EEEEECTTTSCCEEEEEECT-TSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccc-----ceeeeccCCCCCeeEEEECC-CCcEEEEEe
Confidence 3467788731 0 0357777777777888888887532110 01111112245688999987 887665553
No 333
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=91.23 E-value=3.3 Score=30.26 Aligned_cols=27 Identities=15% Similarity=0.067 Sum_probs=18.3
Q ss_pred CCCEEEEEeC----C-----CeEEEEeCCCceeEee
Q 025649 94 TNKICVVAKG----D-----GVVDVINIESELNISR 120 (250)
Q Consensus 94 ~~~~l~~~~~----d-----~~i~~~d~~~~~~~~~ 120 (250)
++++++.|+. + ..+.+||+.+.+....
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~ 105 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPC 105 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEEC
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeEC
Confidence 5677777765 2 4688999988765443
No 334
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=90.55 E-value=3.8 Score=29.76 Aligned_cols=27 Identities=15% Similarity=0.020 Sum_probs=18.8
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCceeEee
Q 025649 94 TNKICVVAKGD-----GVVDVINIESELNISR 120 (250)
Q Consensus 94 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~ 120 (250)
++++++.|+.+ ..+.+||..+.+....
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 56777777754 3588999988765443
No 335
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=88.68 E-value=6.3 Score=29.65 Aligned_cols=71 Identities=21% Similarity=0.078 Sum_probs=41.3
Q ss_pred cEEEEEeecC----CCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee-CC
Q 025649 167 AASCVAFSMF----GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TS 241 (250)
Q Consensus 167 ~v~~~~~~p~----~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d 241 (250)
.+..++|..- ..+|.++++.-..+.|...++..+.... ....+......+..+++.| ||.+.++.. .+
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~------~~~~~~~~~~rp~~v~~~p-dG~lyv~td~~~ 344 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTE------DGRILTDRGQRIRDVRTGP-DGYLYVLTDESS 344 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE------EEEESGGGCCCEEEEEECT-TSCEEEEECSTT
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEee------eEEcccCCCCceeEEEECC-CCcEEEEEeCCC
Confidence 4677777510 0146777777777888888887542111 1111123345788999987 887655433 45
Q ss_pred ceE
Q 025649 242 KVV 244 (250)
Q Consensus 242 ~~i 244 (250)
|.|
T Consensus 345 g~I 347 (353)
T 2g8s_A 345 GEL 347 (353)
T ss_dssp EEE
T ss_pred CEE
Confidence 644
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=88.26 E-value=12 Score=32.53 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=30.7
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 121 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 121 (250)
..+.+++..+ +..++++-+.|+++|+|++.++++....
T Consensus 236 ~~~~~~~~~~------~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLS------TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEET------TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecC------CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 3456666665 7889999999999999999999877654
No 337
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=86.99 E-value=8.1 Score=29.02 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=37.1
Q ss_pred cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649 167 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 238 (250)
Q Consensus 167 ~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 238 (250)
....++|. +|.++++.-..+.|...++.......... .. ..+..-...+..+++.| ||.+.++.
T Consensus 269 ap~G~~~~----~G~l~v~~~~~~~v~~v~~~~~~~~~~~~--~~-~~~~~~~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 269 PPGNLAFF----RGDLYVAGLRGQALLRLVLEGERGRWRVL--RV-ETALSGFGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp CEEEEEEE----TTEEEEEETTTTEEEEEEEEEETTEEEEE--EE-EEEEESSCCEEEEEECT-TSCEEEEE
T ss_pred CCcceEEE----CCEEEEEECCCCEEEEEEECCCCcceeec--ch-heecccCCCeeEEEECC-CCcEEEEE
Confidence 45677775 56777776667788888776532100000 01 11112235788999997 88766554
No 338
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.19 E-value=12 Score=29.43 Aligned_cols=30 Identities=0% Similarity=-0.283 Sum_probs=21.9
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEcc
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFS 52 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~ 52 (250)
.-..|+|.|++...|+.+...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 446999999984224555678999999754
No 339
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=84.84 E-value=11 Score=31.63 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=29.8
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 62 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 62 (250)
.|.++.+. .. ++++-+.|+++|+|++++++++.....
T Consensus 223 ~Is~~~~~--~~-fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFH--ER-YLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEET--TT-EEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccC--Cc-EEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45555543 45 899999999999999999998887765
No 340
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=84.61 E-value=9.7 Score=27.80 Aligned_cols=96 Identities=14% Similarity=0.027 Sum_probs=48.8
Q ss_pred cEEEEccccee--eeeeccCCCCCeeeEEEcCCCCeEEEEecC-C-----CeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649 2 WQIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGL-D-----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQ 73 (250)
Q Consensus 2 i~iwd~~~~~~--~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~-d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 73 (250)
+.+||+.+++- +..+. .....- +++. -+++ +++.|+. + ..+.+||+.+.+-...-...
T Consensus 119 ~~~~d~~~~~W~~~~~~p-~~r~~~-~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p---------- 184 (315)
T 4asc_A 119 VMCYDRLSFKWGESDPLP-YVVYGH-TVLS-HMDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ---------- 184 (315)
T ss_dssp EEEEETTTTEEEECCCCS-SCCBSC-EEEE-ETTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS----------
T ss_pred EEEECCCCCcEeECCCCC-Ccccce-eEEE-ECCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC----------
Confidence 56778776543 22222 111111 2222 3455 6777765 2 46888888765422111101
Q ss_pred ccCCCceeEEecCCCcccCCCCCEEEEEeCCC-----eEEEEeCCCceeEee
Q 025649 74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-----VVDVINIESELNISR 120 (250)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~ 120 (250)
.+..-++++.. ++++++.|+.++ .+.+||+.+.+....
T Consensus 185 --~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 227 (315)
T 4asc_A 185 --TARSLFGATVH-------DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF 227 (315)
T ss_dssp --SCCBSCEEEEE-------TTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred --CchhceEEEEE-------CCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence 11112223322 567778877654 588899988655443
No 341
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=84.27 E-value=17 Score=30.45 Aligned_cols=190 Identities=9% Similarity=-0.012 Sum_probs=93.0
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-----CCc---cceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-----RPN---KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
..|.++...+++. |..|+..+-|.++|..+. ... ..+... .......|.++...+
T Consensus 419 ~~v~~i~~d~~g~--lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~i~~i~~d~------ 481 (758)
T 3ott_A 419 NWTYYIFEDTAGQ--LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVH---------NGLSGMFINQIIPDN------ 481 (758)
T ss_dssp SSEEEEEECTTSE--EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGG---------GTCSCSCEEEEEECT------
T ss_pred ceEEEEEEcCCCC--EEEEECCCceEEEccccccccCCcceecccccccc---------cccccceeeeEEEcC------
Confidence 4577888777775 666666666778886531 111 011100 001224578887776
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeeccCCC--CCCccceeecccceeEEEe-eeeeeccCeeeeeeccc--cC-cccc
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRSKSTT--KPLKGSQSTSKVNIRDAEM-EILDQSGGKRLHLDYSV--GG-HTAA 167 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~-h~~~ 167 (250)
++++.+.++..+-|..+|..+++......... ...+.++....+|...+.. +..........+ ...+ .+ ....
T Consensus 482 ~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~Gl~~~~~~~~~-~~~~~~~gl~~~~ 560 (758)
T 3ott_A 482 EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFHGGVMRINPKDES-QQSISFGSFSNNE 560 (758)
T ss_dssp TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEETTEEEEECC--CC-CCBCCCCC---CC
T ss_pred CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEecCceEEEecCCCc-eEEecccCCCccc
Confidence 78777644444568889998766443321111 1345566667777665521 111111111111 1111 11 1245
Q ss_pred EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEE
Q 025649 168 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 246 (250)
Q Consensus 168 v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~v 246 (250)
|.++... +|++.++. ..| |..+|..+.... .+.-....+....+...+|. |..|+.+|.+.+
T Consensus 561 i~~i~~~----~g~lWi~t-~~G-l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~G~-l~fG~~~Gl~~f 622 (758)
T 3ott_A 561 ILSMTCV----KNSIWVST-TNG-LWIIDRKTMDAR----------QQNMTNKRFTSLLFDPKEDC-VYLGGADGFGIS 622 (758)
T ss_dssp EEEEEEE----TTEEEEEE-SSC-EEEEETTTCCEE----------EC--CCCCCSEEEEETTTTE-EEEECBSEEEEE
T ss_pred eEEEEEC----CCCEEEEC-CCC-eEEEcCCCceeE----------EecCCCCceeeeEEECCCCc-EEEecCCceEEE
Confidence 7777643 56655554 444 778888775221 11111122233444433564 677777775543
No 342
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=84.25 E-value=8.7 Score=26.96 Aligned_cols=67 Identities=7% Similarity=-0.096 Sum_probs=36.9
Q ss_pred EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-CCceeEEEecCCCCCeEEEeeCCceEE
Q 025649 168 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTSKVVK 245 (250)
Q Consensus 168 v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~ 245 (250)
-.++.|. ++|.+.++ .||.|+-++-.+.....-...... .... =..+..|.+.| +|.+.+.. |+.++
T Consensus 90 F~a~~fD---~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~---vg~~gw~~~~~lff~p-~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 90 FQFLFFD---PNGYLYAV--SKDKLYKASPPQSDTDNWIARATE---VGSGGWSGFKFLFFHP-NGYLYAVH--GQQFY 157 (236)
T ss_dssp CSEEEEC---TTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEE---EECSSGGGEEEEEECT-TSCEEEEE--TTEEE
T ss_pred ceEEEEC---CCCCEEEe--CCCEEEEeCCCcCCCCceeccccE---eccCCCCceEEEEECC-CceEEEEe--CCcEE
Confidence 3577888 89988877 569998887644221110000011 1111 13467777776 78644444 77653
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=82.64 E-value=16 Score=28.69 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=22.7
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 116 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 116 (250)
....+|+|.| +++++++-...+.|++++..++.
T Consensus 27 ~~P~~~a~~p------dG~l~V~e~~gg~I~~~~~~~g~ 59 (454)
T 1cru_A 27 NKPHALLWGP------DNQIWLTERATGKILRVNPESGS 59 (454)
T ss_dssp SSEEEEEECT------TSCEEEEETTTCEEEEECTTTCC
T ss_pred CCceEEEEcC------CCcEEEEEcCCCEEEEEECCCCc
Confidence 3457899998 88877765444578888765443
No 344
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=81.42 E-value=13 Score=27.08 Aligned_cols=27 Identities=11% Similarity=-0.082 Sum_probs=18.7
Q ss_pred CCCEEEEEeC------CCeEEEEeCCCceeEee
Q 025649 94 TNKICVVAKG------DGVVDVINIESELNISR 120 (250)
Q Consensus 94 ~~~~l~~~~~------d~~i~~~d~~~~~~~~~ 120 (250)
++++++.|+. -..+.+||+.+.+....
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~ 190 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL 190 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC
Confidence 5777777764 24589999998765443
No 345
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.41 E-value=7.6 Score=34.54 Aligned_cols=34 Identities=26% Similarity=0.136 Sum_probs=27.5
Q ss_pred EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee
Q 025649 168 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 204 (250)
Q Consensus 168 v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 204 (250)
+.+++.. ++..++++-+.|+++|+|++.+++++.
T Consensus 240 ~vs~~~~---~~~~~lftL~~D~~LRiWsl~t~~~v~ 273 (1139)
T 4fhn_B 240 IISMIFL---STYNVLVMLSLDYKLKVLDLSTNQCVE 273 (1139)
T ss_dssp BSCCEEE---TTTTEEEEEBTTCEEEEEETTTTEEEE
T ss_pred eEEeecc---CCccEEEEEeCCCEEEEEECCCCCeEE
Confidence 4445555 677899999999999999999987654
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=81.15 E-value=21 Score=29.12 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=49.8
Q ss_pred EEEEeecCCCCCcEEEEee-CCCeEEEEecCCCcceec---ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649 169 SCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQT---SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV 244 (250)
Q Consensus 169 ~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 244 (250)
..+..+ |+|++++.++ .+.++.++|++....... ......+.......-.....+|.+ +|....|---|..|
T Consensus 326 HGv~vs---PDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 326 HGCNTS---SDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp CCEEEC---TTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred cceeeC---CCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceE
Confidence 456667 8999888765 488999999986432110 011122222333455677888987 77555556689999
Q ss_pred EEEeC
Q 025649 245 KVYSI 249 (250)
Q Consensus 245 ~vw~~ 249 (250)
--|++
T Consensus 402 vkWni 406 (638)
T 3sbq_A 402 VKWNM 406 (638)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 99986
No 347
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.02 E-value=1.3 Score=39.34 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=32.1
Q ss_pred CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec
Q 025649 23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 62 (250)
Q Consensus 23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 62 (250)
.+.+++..++.. ++++-+.|+++|+|++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~-~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTT-EEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCcc-EEEEEeCCCEEEEEECCCCCeEEeech
Confidence 455666677777 899999999999999999998877654
No 348
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=73.93 E-value=26 Score=26.37 Aligned_cols=33 Identities=6% Similarity=0.106 Sum_probs=24.9
Q ss_pred CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce
Q 025649 78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 116 (250)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 116 (250)
..-..|++.| ++.++++--..|.|++++...++
T Consensus 32 ~~P~~ia~~p------dG~llVter~~G~I~~v~~~~g~ 64 (347)
T 3das_A 32 NSPWGLAPLP------GGDLLVSSRDEATITRVDAKTGR 64 (347)
T ss_dssp SSEEEEEECT------TSCEEEEETTTCEEEEECTTTCC
T ss_pred CCceEEEEcC------CCcEEEEEecCCEEEEEECCCCc
Confidence 4567899998 88877776558999999866543
No 349
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=73.42 E-value=40 Score=28.32 Aligned_cols=30 Identities=10% Similarity=0.083 Sum_probs=25.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeeccC
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRSKS 123 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 123 (250)
+..++++-+.|.++|+|++.++++......
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 467999999999999999999987765444
No 350
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=72.59 E-value=42 Score=28.17 Aligned_cols=184 Identities=11% Similarity=0.005 Sum_probs=91.9
Q ss_pred CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649 22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 101 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 101 (250)
..|.++....++. |..|+.+| +..||..+.+...... . ....|.++... ++. |-.+
T Consensus 63 ~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~~~~-~------------~~~~i~~i~~~-------~g~-lWig 118 (758)
T 3ott_A 63 TRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQPET-D------------FPTDVRTMALQ-------GDT-LWLG 118 (758)
T ss_dssp SCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECCCSC-C------------CCSCEEEEEEE-------TTE-EEEE
T ss_pred ceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEECccc-C------------CCceEEEEEec-------CCc-EEEE
Confidence 4688887777764 66666665 7789987653221000 0 12345655432 454 4455
Q ss_pred eCCCeEEEEeCCCceeEee-c--cCCCCCCccceeecccceeEEEe--eee--eeccCeeeeeeccccC----ccccEEE
Q 025649 102 KGDGVVDVINIESELNISR-S--KSTTKPLKGSQSTSKVNIRDAEM--EIL--DQSGGKRLHLDYSVGG----HTAAASC 170 (250)
Q Consensus 102 ~~d~~i~~~d~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~----h~~~v~~ 170 (250)
+.+ -|..||..+++.... . .......+.++...++|...+.. |.. +... ...+.. .... ....|.+
T Consensus 119 t~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~-~~~~~~-~~~~~~~~~~~~i~~ 195 (758)
T 3ott_A 119 ALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSN-GKFEGI-PLPVHSSQSNLFVNS 195 (758)
T ss_dssp ETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTT-TEEEEE-CCCCCTTCSSCCEEE
T ss_pred cCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCC-CceEEe-cCCCccccccceeEE
Confidence 555 588899876554322 1 11122456677777777665521 111 1111 111111 1111 1234788
Q ss_pred EEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649 171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 248 (250)
Q Consensus 171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~ 248 (250)
+... +++..|-.|+. +-+..+|..++... .........|.++...+ +|. |..|..+| +.+++
T Consensus 196 i~~d---~~~~~lWigt~-~Gl~~~~~~~~~~~---------~~~~l~~~~i~~i~~d~-~g~-lWigT~~G-l~~~~ 257 (758)
T 3ott_A 196 LLED---TTRQCVWIGTE-GYLFQYFPSTGQIK---------QTEAFHNNSIKSLALDG-NGD-LLAGTDNG-LYVYH 257 (758)
T ss_dssp EEEE---TTTTEEEEEEE-EEEEEEETTTTEEE---------EEEEEEEEEEEEEEECT-TCC-EEEEETTE-EEEEC
T ss_pred EEEE---CCCCEEEEEEC-CCCeEEcCCCCeEE---------eccCCCCCeEEEEEEcC-CCC-EEEEeCCc-eeEEe
Confidence 8777 66654444443 46888888765211 11111123477776654 555 44444444 55554
No 351
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=72.16 E-value=29 Score=26.19 Aligned_cols=68 Identities=7% Similarity=0.114 Sum_probs=42.7
Q ss_pred ccEEEEEeecCCCCCcEEEEeeC-----------------CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649 166 AAASCVAFSMFGERGKYLISGGN-----------------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 228 (250)
Q Consensus 166 ~~v~~~~~~p~~~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 228 (250)
...+.+.+. ++|.+.++... .|.|..+|.... . .....-...+.++|+
T Consensus 165 ~~pND~~v~---~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~---------~---~~~~~l~~pNGia~s 229 (355)
T 3sre_A 165 PSVNDIVAV---GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV---------R---VVAEGFDFANGINIS 229 (355)
T ss_dssp SSEEEEEEE---ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCC---------E---EEEEEESSEEEEEEC
T ss_pred CCCceEEEe---CCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeE---------E---EeecCCcccCcceEC
Confidence 356888888 78888777541 234544544211 1 122223457889999
Q ss_pred CCCCCeEEEee-CCceEEEEeC
Q 025649 229 PTESENLVVCD-TSKVVKVYSI 249 (250)
Q Consensus 229 ~~~~~~l~s~~-~d~~i~vw~~ 249 (250)
| |++.|+.+. ..+.|..|++
T Consensus 230 p-Dg~~lYvadt~~~~I~~~~~ 250 (355)
T 3sre_A 230 P-DGKYVYIAELLAHKIHVYEK 250 (355)
T ss_dssp T-TSSEEEEEEGGGTEEEEEEE
T ss_pred C-CCCEEEEEeCCCCeEEEEEE
Confidence 8 887776654 5778988886
No 352
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=67.67 E-value=26 Score=26.02 Aligned_cols=28 Identities=7% Similarity=0.153 Sum_probs=17.6
Q ss_pred CCCEEEEEeCCC------eEEEEeCCCceeEeec
Q 025649 94 TNKICVVAKGDG------VVDVINIESELNISRS 121 (250)
Q Consensus 94 ~~~~l~~~~~d~------~i~~~d~~~~~~~~~~ 121 (250)
++++++.|+.++ .+.++++++++.....
T Consensus 316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 678888887543 4556688776655443
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=65.12 E-value=44 Score=25.55 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=39.6
Q ss_pred cEEEEcccc--eeeeeeccC-----CCCCeeeEEEc---CC----CCeEEEEecCCCeEEEEEccCCCCccce
Q 025649 2 WQIIDIRQH--CLYKSLRAG-----HSSICSSVQFI---PW----KPWEVISGGLDSKLVMWDFSKGRPNKIV 60 (250)
Q Consensus 2 i~iwd~~~~--~~~~~l~~~-----h~~~v~~l~~~---~~----~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 60 (250)
|.+||+.++ ++++++... ..+.+..+.+. |. +....++=+..+-|.++|+.+++.-+..
T Consensus 125 Lv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 125 IVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT 197 (381)
T ss_dssp EEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc
Confidence 568999999 988877621 13457788887 22 2223344455788999999988765443
No 354
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=65.01 E-value=22 Score=29.11 Aligned_cols=57 Identities=7% Similarity=-0.074 Sum_probs=42.0
Q ss_pred eeEEecCCCcccCCCCCEEEEEeCC------------CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE
Q 025649 80 VHAIAIPDADMLDKTNKICVVAKGD------------GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 80 v~~~~~~~~~~~~~~~~~l~~~~~d------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (250)
.-.|.|+| .|++++.-..+ +.+.+.+..+++.......+....+..+.|+||++.|+
T Consensus 478 PDNL~fd~------~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlf 546 (592)
T 3zwu_A 478 PDGLGFDK------AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF 546 (592)
T ss_dssp EEEEEECT------TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred CcceEECC------CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEE
Confidence 35678887 88866665432 34666677777776666667778899999999998887
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=63.34 E-value=48 Score=25.35 Aligned_cols=91 Identities=11% Similarity=0.140 Sum_probs=53.1
Q ss_pred CCeeeEEEcCCCC-eEEEEecC-------------CCeEEEEEccCC--CCccceecCCCCCCCCCCcccCCCceeEEec
Q 025649 22 SICSSVQFIPWKP-WEVISGGL-------------DSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAI 85 (250)
Q Consensus 22 ~~v~~l~~~~~~~-~~l~s~s~-------------dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 85 (250)
-.|..+...+.+. |.|=+|-. --.|.+||+.++ +.++++.++..... ....+..+++
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~-------~~S~l~di~V 159 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVE-------KPTYFGGFAV 159 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCC-------CGGGEEEEEE
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcc-------cCCccceEEE
Confidence 3577788887775 11223321 126889999999 98888876521111 1234566665
Q ss_pred C---CCcccCCCCCEEEEE-eCCCeEEEEeCCCceeEeec
Q 025649 86 P---DADMLDKTNKICVVA-KGDGVVDVINIESELNISRS 121 (250)
Q Consensus 86 ~---~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~ 121 (250)
. |.. +.++.++..+ +..+.|.++|+.+++.-...
T Consensus 160 D~~~~~~--~c~~~~aYItD~~~~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 160 DVANPKG--DCSETFVYITNFLRGALFIYDHKKQDSWNVT 197 (381)
T ss_dssp EESCTTT--TSCSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ecccCCC--CCCccEEEEEcCCCCcEEEEECCCCcEEEEc
Confidence 5 200 0013444444 35788999999998765443
No 356
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=62.90 E-value=37 Score=27.80 Aligned_cols=59 Identities=15% Similarity=0.027 Sum_probs=37.5
Q ss_pred eeeEEEcCCCCeEEEEecCC------------CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649 24 CSSVQFIPWKPWEVISGGLD------------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML 91 (250)
Q Consensus 24 v~~l~~~~~~~~~l~s~s~d------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (250)
.-.|+|+|.|. +++.-..+ ..+.+.+..+++..+.+..+ ....++.+.|+|
T Consensus 478 PDNL~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P------------~gaE~TG~~fsp---- 540 (592)
T 3zwu_A 478 PDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP------------IGCEVTGISFSP---- 540 (592)
T ss_dssp EEEEEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC------------TTCEEEEEEECT----
T ss_pred CcceEECCCCC-EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC------------CCccCcCeeECC----
Confidence 35688999998 55543322 23555555566654444422 346789999998
Q ss_pred CCCCCEEEEE
Q 025649 92 DKTNKICVVA 101 (250)
Q Consensus 92 ~~~~~~l~~~ 101 (250)
+++.|++.
T Consensus 541 --Dg~tlfvn 548 (592)
T 3zwu_A 541 --DQKTLFVG 548 (592)
T ss_dssp --TSSEEEEE
T ss_pred --CCCEEEEE
Confidence 88877765
No 357
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=55.74 E-value=71 Score=26.11 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=39.1
Q ss_pred CCeeeEEEcCCCCeEEE-EecC-----------CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649 22 SICSSVQFIPWKPWEVI-SGGL-----------DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 89 (250)
Q Consensus 22 ~~v~~l~~~~~~~~~l~-s~s~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (250)
.....|.|.++|. +.+ +=.. ...|..++..+++....+... ....++.++|+|
T Consensus 476 nsPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P------------~~aEpnGiafSP-- 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP------------IGCEVTGISFSP-- 540 (592)
T ss_dssp CCEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC------------TTCEEEEEEECT--
T ss_pred CCCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC------------CCccccCCEECC--
Confidence 3456899999998 555 3211 125666666666654444311 124689999999
Q ss_pred ccCCCCCEEEEEe
Q 025649 90 MLDKTNKICVVAK 102 (250)
Q Consensus 90 ~~~~~~~~l~~~~ 102 (250)
|++.|.+.-
T Consensus 541 ----D~ktLfV~v 549 (592)
T 4a9v_A 541 ----DQKTLFVGI 549 (592)
T ss_dssp ----TSSEEEEEE
T ss_pred ----CCCEEEEEE
Confidence 888887774
No 358
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=51.26 E-value=53 Score=26.82 Aligned_cols=58 Identities=5% Similarity=-0.103 Sum_probs=40.4
Q ss_pred ceeEEecCCCcccCCCCCEEEEEeC------------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE
Q 025649 79 FVHAIAIPDADMLDKTNKICVVAKG------------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~l~~~~~------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (250)
....+.|.+ +|.+.+.... .+.+..++..+++.......+....+..++|+||++.|+
T Consensus 477 sPDnL~fd~------~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLf 546 (592)
T 4a9v_A 477 SPDGLGFDK------AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF 546 (592)
T ss_dssp CEEEEEECT------TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred CCCceEECC------CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEE
Confidence 345677887 7887774322 225777777777766555444456789999999999888
No 359
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=47.61 E-value=1.2e+02 Score=25.26 Aligned_cols=147 Identities=9% Similarity=0.070 Sum_probs=68.6
Q ss_pred CCCEEEEEeCC----CeEEEEeCCCceeEeec-c-----CCCCCCccceeecc-cceeEEEeeeeeecc--Ce-------
Q 025649 94 TNKICVVAKGD----GVVDVINIESELNISRS-K-----STTKPLKGSQSTSK-VNIRDAEMEILDQSG--GK------- 153 (250)
Q Consensus 94 ~~~~l~~~~~d----~~i~~~d~~~~~~~~~~-~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~------- 153 (250)
++.+++.|+.+ ..+.+||..+++..... . .+....-.+++..+ +++.++ .|..+... ..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv-~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLL-IGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEE-ECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEE-EcCCCCCCCccccEEEEeC
Confidence 56777777753 46889999887654333 2 11111112223332 666555 44433211 00
Q ss_pred ---eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC--eEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649 154 ---RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 228 (250)
Q Consensus 154 ---~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 228 (250)
.-..+..+......-.++.+ .++.+++.|+.++ .+.+||..+..................| ..+.+.
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~----~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~----~a~v~~ 547 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSL----PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVS----AGLEFD 547 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEEC----TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBS----CEEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEE----cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccce----eEEEEe
Confidence 11111112211112222332 3678888887654 6899999886443211100010011122 223344
Q ss_pred CCCCCeEEEeeC--C-----ceEEEEeC
Q 025649 229 PTESENLVVCDT--S-----KVVKVYSI 249 (250)
Q Consensus 229 ~~~~~~l~s~~~--d-----~~i~vw~~ 249 (250)
..++.+++.|+. + ..+.+||+
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 575 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKY 575 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEE
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEc
Confidence 323667777765 2 35777775
No 360
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=47.56 E-value=76 Score=22.85 Aligned_cols=126 Identities=9% Similarity=0.008 Sum_probs=68.4
Q ss_pred CCCCeeeEEEcC--CCCeEEEEecCCCeEEEEEccCCC----CccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 20 HSSICSSVQFIP--WKPWEVISGGLDSKLVMWDFSKGR----PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 20 h~~~v~~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
....|..+.. + +.+ +++..+.+|.++-..+..-. -+..+++. ..+.+..+....
T Consensus 66 ~~e~i~~v~~-~~~~~~-~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk------------egD~l~~~~~~~------ 125 (276)
T 3no0_A 66 REEKIVGAFI-REKFGN-RLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT------------EGDEVVSIASSV------ 125 (276)
T ss_dssp TTCCEEEEEE-GGGSCS-EEEEEETTSEEEEEEGGGTTTCSTTEECSCCC------------TTCCEEEEEECC------
T ss_pred CCCEEEEEEC-CcCCCC-EEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC------------CCCEEEEEEEeC------
Confidence 3455666644 3 345 79999999999998876543 00111111 224454444443
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEe
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 173 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 173 (250)
....++..+.+|.+..+....-.... ... .| .....+... ..|.++..
T Consensus 126 ~~~~ill~T~~G~~~r~~~~eip~~g--R~a------------~G-----------------v~~i~L~~~-d~vv~~~~ 173 (276)
T 3no0_A 126 DETHILLFTKKGRVARFSVREVPPST--PGA------------RG-----------------VQGIKLEKN-DETSGLRI 173 (276)
T ss_dssp SSCEEEEEETTSEEEEEEGGGSCBCC--TTC------------CC-----------------EECCCCCTT-CCEEEEEE
T ss_pred CCCEEEEEECCCEEEEEEhhhCCCcC--CCC------------CC-----------------EEEEccCCC-CEEEEEEE
Confidence 45567777788887777654211000 000 00 011123322 44555544
Q ss_pred ecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649 174 SMFGERGKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~ 200 (250)
. +++.+++..+..|.++...+...
T Consensus 174 ~---~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 174 W---NGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp E---SSCSEEEEEETTSCEEEEEGGGS
T ss_pred e---CCCCEEEEEeCCCcEEEeEHHHc
Confidence 4 45568888888999988877554
No 361
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=43.99 E-value=97 Score=23.03 Aligned_cols=127 Identities=9% Similarity=0.045 Sum_probs=67.5
Q ss_pred CCeeeEEEcC---CCCeEEEEecCCCeEEEEEccCCCCcc-----ceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649 22 SICSSVQFIP---WKPWEVISGGLDSKLVMWDFSKGRPNK-----IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 93 (250)
Q Consensus 22 ~~v~~l~~~~---~~~~~l~s~s~dg~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (250)
..|..+..-+ +.+ +++..+.+|.++--.+....... .+.+. ..+.+..+....
T Consensus 95 e~i~~~~~~~~~~~e~-~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lk------------e~D~lv~~~~~~------ 155 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAP-YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR------------DNDELVGAVLCS------ 155 (327)
T ss_dssp CCEEEEEEESSTTSSS-EEEEEETTSEEEEEEGGGGCCCCSSCEESCBCC------------TTCCEEEEEEEC------
T ss_pred CEEEEEEEeccCCCCC-EEEEEcCCCEEEEeEHHHhhccccCceEEEEEC------------CCCEEEEEEEec------
Confidence 4455554333 355 89999999999988876533221 11111 123344443333
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEe
Q 025649 94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 173 (250)
Q Consensus 94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 173 (250)
....|+..+..|.+..+.....+... +.....| .....+.. ...|.++..
T Consensus 156 ~~d~ill~T~~G~~~rf~~~~~eip~------------~gr~a~G-----------------v~~i~L~~-~d~Vv~~~~ 205 (327)
T 3uc1_A 156 AGDDLLLVSANGQSIRFSATDEALRP------------MGRATSG-----------------VQGMRFNI-DDRLLSLNV 205 (327)
T ss_dssp TTCEEEEEETTSEEEEEECCTTTSCC------------CCTTSBC-----------------EESSCCCT-TCCEEEEEE
T ss_pred CCCEEEEEECCCeEEEEECcccccCc------------CCcCCCC-----------------eeeecCCC-CCEEEEEEE
Confidence 34566667777887777765211100 0000001 01112332 344666555
Q ss_pred ecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649 174 SMFGERGKYLISGGNDKLVKVWDCSRF 200 (250)
Q Consensus 174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~ 200 (250)
. +.+.+++..+..|.++.-.+...
T Consensus 206 ~---~~~~~ll~~T~~G~~Krt~l~e~ 229 (327)
T 3uc1_A 206 V---REGTYLLVATSGGYAKRTAIEEY 229 (327)
T ss_dssp C---CTTCEEEEEETTSEEEEEEGGGS
T ss_pred E---CCCCEEEEEeCCCcEEEEEHHHc
Confidence 4 44568888888999988876543
No 362
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=39.60 E-value=61 Score=19.48 Aligned_cols=48 Identities=8% Similarity=-0.038 Sum_probs=19.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE
Q 025649 95 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 142 (250)
Q Consensus 95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (250)
+.+.+.-..||.+.+|+...+................+.+..+|.+++
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl 71 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDI 71 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEE
Confidence 334444445566666654322222211111111123455666666655
No 363
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=33.15 E-value=2.1e+02 Score=23.98 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=34.7
Q ss_pred EEEEeeCCCeEE-EEecCCCcceecccccceeee--eeccCCceeEEEecCCCCCeEEEeeCCceEEE
Q 025649 182 YLISGGNDKLVK-VWDCSRFQGVQTSINNDLLIK--NINLNKKVNWLCTTPTESENLVVCDTSKVVKV 246 (250)
Q Consensus 182 ~l~s~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~v 246 (250)
.+..|..+|.|. +.-......... ..-.+.. ......+|..|.+++ +.+.|+.++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~--~~~~leEi~v~~~~~pI~~L~ld~-~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDL--EEVLLEEMTVFREPTTISAMELST-KQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------C--EEEEEEEEECSSSCCCCCEEEEET-TTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCcccc--ceEEEEEEeecCCCceeeeEEEcC-CCCEEEEEECCEEEEE
Confidence 566788888764 333222211000 0011111 224556789999987 6778999998887765
No 364
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=31.32 E-value=1.9e+02 Score=22.73 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=22.0
Q ss_pred ceeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCC
Q 025649 79 FVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIE 113 (250)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~ 113 (250)
.-..|+|.| ++. .|+++...|.|++++..
T Consensus 15 ~P~~~a~~p------dG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSG------DGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCS------SSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECC------CCCeEEEEEeCCceEEEEeCC
Confidence 347889998 875 56666788999999754
No 365
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=28.79 E-value=1.9e+02 Score=21.78 Aligned_cols=47 Identities=9% Similarity=-0.157 Sum_probs=25.0
Q ss_pred CCEEEEEeCCCeEEEEeCCC-ce-eEeeccCCCCCCccceeecc--cceeEE
Q 025649 95 NKICVVAKGDGVVDVINIES-EL-NISRSKSTTKPLKGSQSTSK--VNIRDA 142 (250)
Q Consensus 95 ~~~l~~~~~d~~i~~~d~~~-~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~ 142 (250)
...|.+|...| +.+++... +. -...........+.++.++| .+...+
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~ 72 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLM 72 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEE
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEE
Confidence 45677777777 55555432 21 11111112235788999998 455544
No 366
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=28.13 E-value=2.6e+02 Score=23.31 Aligned_cols=59 Identities=8% Similarity=0.001 Sum_probs=34.6
Q ss_pred cEEEEeeCCCeEEE-EecCCCcceecccccceeeeeeccCCceeEEEecCCCC--CeEEEeeCCceEEE
Q 025649 181 KYLISGGNDKLVKV-WDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES--ENLVVCDTSKVVKV 246 (250)
Q Consensus 181 ~~l~s~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~d~~i~v 246 (250)
..+..|..+|.|.= -......... +.+ .......+|..|.+++ +. ++|+.++.++.++|
T Consensus 416 tV~flGT~~G~l~Kvv~~~~~~~~~-----ee~-~~~~~~~pI~~l~l~~-~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 416 DVMFVSTDRGALHKAISLEHAVHII-----EET-QLFQDFEPVQTLLLSS-KKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEETTSEEEEEEECSSSEEEE-----EEE-ECCTTCCCCCEEEECC-SSSSCEEEEECSSCEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCceEE-----EEe-cccCCCCcceeeEecc-CCCccEEEEEEcCeEEEE
Confidence 36777888887643 3333321110 111 1123456888898886 55 78888888876664
No 367
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=27.82 E-value=1.8e+02 Score=21.32 Aligned_cols=114 Identities=10% Similarity=0.086 Sum_probs=59.6
Q ss_pred CCeEEEEecCCCeEEEEEccCCCCc-----cceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeE
Q 025649 33 KPWEVISGGLDSKLVMWDFSKGRPN-----KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 107 (250)
Q Consensus 33 ~~~~l~s~s~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i 107 (250)
.. +|+..+..|.++.-.+...... ..+.+. ..+.+-.+.... ....++..+.+|.+
T Consensus 114 ~~-~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~------------~~d~lv~~~~~~------~~~~i~l~T~~G~~ 174 (312)
T 1suu_A 114 DA-YLLLTTASGKIARFESTDFKAVKSRGVIVIKLN------------DKDFVTSAEIVF------KDEKVICLSKKGSA 174 (312)
T ss_dssp TC-EEEEEETTSEEEEEEGGGGCC----CEECBCCC------------TTCCEEEEEEEC------TTCEEEEEETTSEE
T ss_pred CC-EEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC------------CCCEEEEEEEeC------CCCEEEEEeCCCcE
Confidence 44 6888889999988877542211 111111 123344433332 34567777788887
Q ss_pred EEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEee
Q 025649 108 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 187 (250)
Q Consensus 108 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~ 187 (250)
..+....-.... .. ........+.. ...|.++..- .++..+++.+
T Consensus 175 ~r~~~~ev~~~g--R~-----------------------------~~Gv~~i~L~~-~d~vv~~~~v---~~~~~l~~vt 219 (312)
T 1suu_A 175 FIFNSRDVRLTN--RG-----------------------------TQGVCGMKLKE-GDLFVKVLSV---KENPYLLIVS 219 (312)
T ss_dssp EEEEGGGSCBCC--TT-----------------------------BCCEECCCCCT-TCCEEEEEEC---TTCSEEEEEE
T ss_pred EEEEHHHccccC--CC-----------------------------CCCeEeEEeCC-CCEEEEEEEE---CCCCeEEEEE
Confidence 777765311000 00 00111122332 2344454443 3456677888
Q ss_pred CCCeEEEEecCCC
Q 025649 188 NDKLVKVWDCSRF 200 (250)
Q Consensus 188 ~d~~i~iwd~~~~ 200 (250)
..|..+..++...
T Consensus 220 ~~G~~kr~~~~e~ 232 (312)
T 1suu_A 220 ENGYGKRLNMSKI 232 (312)
T ss_dssp TTSEEEEEEGGGS
T ss_pred CCCceEEEEHHHh
Confidence 8899888887654
No 368
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=27.64 E-value=48 Score=22.30 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=28.4
Q ss_pred CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC
Q 025649 19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 55 (250)
Q Consensus 19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 55 (250)
.+...+.++.|...+.+-+++...+|++.++|.+=|+
T Consensus 116 ~g~~hllsl~f~~g~aHaia~S~~g~~~tlFDPN~GE 152 (188)
T 1ukf_A 116 SGRKHLLSLRFANVQGHAIACSCEGSQFKLFDPNLGE 152 (188)
T ss_dssp TTCEEEEEEEETTTEEEEEEEEEETTEEEEEETTTEE
T ss_pred CCCceEEEEEecCCCceeEEeccCCCeEEEeCCCCce
Confidence 3456677788887665678888889999999998654
No 369
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=26.98 E-value=2.4e+02 Score=22.74 Aligned_cols=70 Identities=11% Similarity=0.007 Sum_probs=41.8
Q ss_pred CeeeEEEcC-CCCeEEEEecCCCeEEEEEcc-CCC--CccceecCCCCCCCCCCcccCCCce-eEEecCCCcccCCCCCE
Q 025649 23 ICSSVQFIP-WKPWEVISGGLDSKLVMWDFS-KGR--PNKIVNFGLPENNGNAGQCYNPAFV-HAIAIPDADMLDKTNKI 97 (250)
Q Consensus 23 ~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~ 97 (250)
..+.|+... ++...+..|+.+|.|.-.-+. ++. .+..+... ....| ..|.+++ +...
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~------------~~~pi~~~l~l~~------~~~~ 449 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQ------------QGSAVSRDLTFDG------TFEH 449 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESS------------TTSCCCSCCEECT------TSSE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccC------------CCCcceeeEEEec------CCCE
Confidence 466666553 233366778889988644443 221 22333322 23456 3777776 7888
Q ss_pred EEEEeCCCeEEEE
Q 025649 98 CVVAKGDGVVDVI 110 (250)
Q Consensus 98 l~~~~~d~~i~~~ 110 (250)
|.+++.++.+++-
T Consensus 450 Lyv~s~~~V~~vp 462 (528)
T 3ol2_B 450 LYVMTQSTLLKVP 462 (528)
T ss_dssp EEEECSSCEEEEE
T ss_pred EEEEeCCEEEEEE
Confidence 9999888777663
No 370
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=23.18 E-value=2.2e+02 Score=20.82 Aligned_cols=80 Identities=6% Similarity=-0.012 Sum_probs=45.1
Q ss_pred cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649 165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV 244 (250)
Q Consensus 165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 244 (250)
.+.+..+... .....++..+.+|.+..+....-..............+. ....|..+...+ ++..+++.+..|..
T Consensus 150 ~d~lv~~~~~---~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~-~~~~l~~vt~~G~~ 224 (312)
T 1suu_A 150 KDFVTSAEIV---FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVK-ENPYLLIVSENGYG 224 (312)
T ss_dssp TCCEEEEEEE---CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECT-TCSEEEEEETTSEE
T ss_pred CCEEEEEEEe---CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEEC-CCCeEEEEECCCce
Confidence 3455555554 345678888889999999876532221111111111222 244566665543 45567788888888
Q ss_pred EEEeC
Q 025649 245 KVYSI 249 (250)
Q Consensus 245 ~vw~~ 249 (250)
+..++
T Consensus 225 kr~~~ 229 (312)
T 1suu_A 225 KRLNM 229 (312)
T ss_dssp EEEEG
T ss_pred EEEEH
Confidence 77654
No 371
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.97 E-value=3.2e+02 Score=21.79 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=22.1
Q ss_pred CCceeEEecCCCcccCCCCCEEEEEeCCCeEEE
Q 025649 77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV 109 (250)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 109 (250)
+.+|..|.+++ +..+|.+++.++.+++
T Consensus 461 ~~pI~~m~l~~------~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 461 PTTISAMELST------KQQQLYIGSTAGVAQL 487 (495)
T ss_dssp CCCCCEEEEET------TTTEEEEEBSSCEEEE
T ss_pred CCccceEEEcC------CCCEEEEEECCeEEEE
Confidence 46788999988 8899999988887665
No 372
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=20.68 E-value=1.8e+02 Score=23.55 Aligned_cols=70 Identities=16% Similarity=0.020 Sum_probs=41.6
Q ss_pred CeeeEEEcCCCC-eEEEEecCCCeEEEEEccCCC----CccceecCCCCCCCCCCcccCCCcee-EEecCCCcccCCCCC
Q 025649 23 ICSSVQFIPWKP-WEVISGGLDSKLVMWDFSKGR----PNKIVNFGLPENNGNAGQCYNPAFVH-AIAIPDADMLDKTNK 96 (250)
Q Consensus 23 ~v~~l~~~~~~~-~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~ 96 (250)
.+++|+....+. ..+..|..+|.|.-..+..+. .+..+... ....+|. .|.+++ ++.
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~-----------~~~~pv~~~l~~~~------~~~ 463 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVF-----------KDGSPILRDMAFSI------NQL 463 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECC-----------TTCCCCCSCCEECT------TSS
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEee-----------cCCCccccceEEcc------CCC
Confidence 466666655332 367788889987655554322 12222211 0134564 777887 888
Q ss_pred EEEEEeCCCeEEE
Q 025649 97 ICVVAKGDGVVDV 109 (250)
Q Consensus 97 ~l~~~~~d~~i~~ 109 (250)
.|.+++.++.+++
T Consensus 464 ~Lyv~s~~~V~kv 476 (539)
T 3al9_A 464 YLYVMSERQVTRV 476 (539)
T ss_dssp EEEEECSSEEEEE
T ss_pred eEEEEecccccee
Confidence 9999988776655
No 373
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=20.25 E-value=25 Score=27.21 Aligned_cols=17 Identities=24% Similarity=0.595 Sum_probs=11.3
Q ss_pred EecCCCeEEEEEccCCC
Q 025649 39 SGGLDSKLVMWDFSKGR 55 (250)
Q Consensus 39 s~s~dg~v~iwd~~~~~ 55 (250)
.+..+|.|++||+++..
T Consensus 162 ~~~~~GVVrvWDVkd~s 178 (577)
T 3mwp_A 162 RAGRDGVVRVWDVKNAE 178 (577)
T ss_dssp ----CCEECSEECSCGG
T ss_pred CCCCCCeEEEEecCCHH
Confidence 56778999999998654
Done!