Query 025650
Match_columns 250
No_of_seqs 205 out of 687
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 08:03:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2107 Uncharacterized conser 100.0 3.2E-65 7E-70 436.1 12.0 177 11-190 1-178 (179)
2 PF03079 ARD: ARD/ARD' family; 100.0 1.6E-48 3.4E-53 330.9 12.0 154 13-170 1-157 (157)
3 COG1791 Uncharacterized conser 100.0 1.9E-45 4.1E-50 316.0 14.3 168 11-190 1-180 (181)
4 PF07883 Cupin_2: Cupin domain 98.7 2.3E-08 5E-13 71.0 5.8 61 94-159 10-71 (71)
5 TIGR03037 anthran_nbaC 3-hydro 98.7 4.9E-08 1.1E-12 84.0 8.1 57 95-152 41-97 (159)
6 COG1917 Uncharacterized conser 98.7 5E-08 1.1E-12 78.4 7.6 61 94-159 55-116 (131)
7 COG0662 {ManC} Mannose-6-phosp 98.7 5.3E-08 1.1E-12 79.1 6.5 55 96-155 50-105 (127)
8 smart00835 Cupin_1 Cupin. This 98.6 3.4E-07 7.5E-12 75.2 11.0 75 74-158 32-108 (146)
9 PRK13264 3-hydroxyanthranilate 98.6 1.1E-07 2.5E-12 83.0 7.7 56 94-150 46-101 (177)
10 PRK04190 glucose-6-phosphate i 98.6 6.1E-07 1.3E-11 78.9 10.5 82 72-159 68-154 (191)
11 PF00190 Cupin_1: Cupin; Inte 98.5 5.8E-07 1.2E-11 73.8 8.6 84 65-159 28-118 (144)
12 TIGR03404 bicupin_oxalic bicup 98.3 3.4E-06 7.4E-11 80.4 10.7 65 95-159 258-323 (367)
13 TIGR03214 ura-cupin putative a 98.3 2.6E-06 5.6E-11 77.4 9.2 57 97-159 195-251 (260)
14 PF02311 AraC_binding: AraC-li 98.3 2E-06 4.2E-11 65.8 6.4 57 93-154 14-70 (136)
15 PF06560 GPI: Glucose-6-phosph 98.1 1.3E-05 2.8E-10 70.4 8.2 89 64-159 43-144 (182)
16 PRK13290 ectC L-ectoine syntha 98.0 2.3E-05 5E-10 64.5 7.7 58 96-159 49-107 (125)
17 PRK09943 DNA-binding transcrip 98.0 2.1E-05 4.6E-10 67.0 7.7 59 96-159 122-180 (185)
18 TIGR03404 bicupin_oxalic bicup 98.0 2.3E-05 5E-10 74.8 8.5 64 95-159 80-143 (367)
19 PLN00212 glutelin; Provisional 98.0 3.2E-05 7E-10 76.7 9.0 67 93-159 91-182 (493)
20 COG2140 Thermophilic glucose-6 97.9 4.1E-05 8.9E-10 68.7 8.3 63 97-159 95-160 (209)
21 PRK13500 transcriptional activ 97.9 2.6E-05 5.6E-10 71.3 6.5 69 76-156 49-117 (312)
22 PRK11171 hypothetical protein; 97.9 7.3E-05 1.6E-09 68.1 9.1 54 98-156 201-254 (266)
23 PRK15457 ethanolamine utilizat 97.8 4.6E-05 1E-09 69.3 7.0 47 94-146 168-214 (233)
24 PRK13501 transcriptional activ 97.8 4.3E-05 9.3E-10 68.4 6.3 51 95-150 31-81 (290)
25 PRK13502 transcriptional activ 97.8 5.7E-05 1.2E-09 67.0 6.7 53 95-152 31-83 (282)
26 PRK10296 DNA-binding transcrip 97.8 7.4E-05 1.6E-09 66.3 7.1 50 94-148 35-84 (278)
27 PRK13503 transcriptional activ 97.8 4E-05 8.7E-10 67.4 5.2 55 93-152 26-80 (278)
28 PRK10371 DNA-binding transcrip 97.7 8.4E-05 1.8E-09 68.0 6.5 57 94-155 38-94 (302)
29 COG4297 Uncharacterized protei 97.6 0.0012 2.5E-08 56.7 12.0 129 46-198 23-154 (163)
30 PF02041 Auxin_BP: Auxin bindi 97.6 0.00023 5.1E-09 61.5 7.2 68 97-166 59-131 (167)
31 TIGR02297 HpaA 4-hydroxyphenyl 97.5 0.00022 4.7E-09 63.2 6.7 58 95-157 36-94 (287)
32 TIGR01479 GMP_PMI mannose-1-ph 97.5 0.0004 8.7E-09 67.8 9.1 59 96-159 390-449 (468)
33 TIGR02451 anti_sig_ChrR anti-s 97.5 0.00055 1.2E-08 60.8 8.9 69 72-159 127-195 (215)
34 COG4101 Predicted mannose-6-ph 97.4 0.001 2.2E-08 55.9 8.7 72 73-156 47-119 (142)
35 PRK15460 cpsB mannose-1-phosph 97.4 0.00058 1.3E-08 67.5 8.2 58 97-159 400-458 (478)
36 PF12973 Cupin_7: ChrR Cupin-l 97.3 0.00037 8E-09 53.3 4.6 59 73-150 25-83 (91)
37 PRK11171 hypothetical protein; 97.3 0.0012 2.5E-08 60.3 8.3 49 101-154 82-130 (266)
38 COG3837 Uncharacterized conser 97.2 0.0006 1.3E-08 59.1 5.7 60 94-159 57-118 (161)
39 PF01050 MannoseP_isomer: Mann 97.2 0.0012 2.7E-08 56.1 7.4 71 68-154 60-131 (151)
40 COG3435 Gentisate 1,2-dioxygen 97.1 0.0009 1.9E-08 63.5 5.9 52 94-149 104-155 (351)
41 TIGR03214 ura-cupin putative a 97.1 0.0018 3.9E-08 59.0 7.2 54 97-155 74-128 (260)
42 PLN00212 glutelin; Provisional 97.0 0.0062 1.3E-07 60.8 11.0 65 94-159 360-426 (493)
43 TIGR02272 gentisate_1_2 gentis 96.9 0.0026 5.7E-08 60.6 7.0 57 95-155 94-150 (335)
44 PF05899 Cupin_3: Protein of u 96.9 0.002 4.3E-08 48.1 4.9 48 96-148 20-67 (74)
45 PF06052 3-HAO: 3-hydroxyanthr 96.6 0.0054 1.2E-07 52.8 6.1 53 96-149 47-99 (151)
46 TIGR02272 gentisate_1_2 gentis 96.6 0.018 3.8E-07 55.0 10.0 87 59-150 215-313 (335)
47 PF12852 Cupin_6: Cupin 96.3 0.0086 1.9E-07 50.6 5.6 44 104-150 37-80 (186)
48 COG4766 EutQ Ethanolamine util 96.3 0.011 2.3E-07 51.6 6.0 84 73-169 88-174 (176)
49 PF06249 EutQ: Ethanolamine ut 96.2 0.0094 2E-07 51.3 5.5 44 101-149 94-137 (152)
50 PF05523 FdtA: WxcM-like, C-te 96.1 0.02 4.4E-07 47.2 6.9 55 96-151 47-103 (131)
51 PRK10572 DNA-binding transcrip 95.7 0.024 5.1E-07 50.6 6.1 51 95-150 42-92 (290)
52 COG3450 Predicted enzyme of th 95.7 0.02 4.3E-07 47.3 5.1 58 72-146 45-103 (116)
53 PF04209 HgmA: homogentisate 1 94.9 0.048 1E-06 53.7 5.6 52 100-156 144-195 (424)
54 PRK05341 homogentisate 1,2-dio 94.1 0.096 2.1E-06 51.8 5.7 45 100-149 152-196 (438)
55 TIGR01015 hmgA homogentisate 1 94.0 0.15 3.2E-06 50.4 6.9 55 100-159 146-200 (429)
56 PF02373 JmjC: JmjC domain, hy 93.8 0.098 2.1E-06 40.1 4.2 27 120-146 76-102 (114)
57 PLN02658 homogentisate 1,2-dio 93.1 0.18 3.9E-06 50.0 5.8 45 100-149 145-189 (435)
58 KOG3995 3-hydroxyanthranilate 91.9 0.24 5.1E-06 45.6 4.4 50 96-146 47-96 (279)
59 PRK09685 DNA-binding transcrip 91.8 0.42 9E-06 42.7 6.0 48 104-156 73-120 (302)
60 PF14499 DUF4437: Domain of un 90.8 0.24 5.1E-06 45.8 3.4 51 96-150 50-100 (251)
61 PF13621 Cupin_8: Cupin-like d 90.5 0.53 1.1E-05 40.2 5.1 37 123-159 207-244 (251)
62 PF14525 AraC_binding_2: AraC- 90.0 0.93 2E-05 36.2 5.9 49 105-158 58-106 (172)
63 PF11699 CENP-C_C: Mif2/CENP-C 88.5 1.4 3E-05 34.4 5.7 70 71-154 11-80 (85)
64 COG3257 GlxB Uncharacterized p 87.9 1.3 2.7E-05 41.0 5.8 53 99-156 200-252 (264)
65 PF04962 KduI: KduI/IolB famil 87.9 0.77 1.7E-05 42.4 4.5 74 95-174 166-256 (261)
66 COG3257 GlxB Uncharacterized p 86.8 1.9 4.2E-05 39.9 6.4 50 103-157 84-135 (264)
67 COG3435 Gentisate 1,2-dioxygen 86.8 1.3 2.8E-05 42.6 5.4 86 58-151 225-325 (351)
68 PF06339 Ectoine_synth: Ectoin 85.6 3.5 7.6E-05 34.8 6.8 74 68-159 32-107 (126)
69 PF02678 Pirin: Pirin; InterP 85.2 4.8 0.0001 32.5 7.3 63 93-159 40-106 (107)
70 PRK12335 tellurite resistance 85.2 3.9 8.5E-05 37.2 7.6 76 84-159 11-92 (287)
71 PF00908 dTDP_sugar_isom: dTDP 84.6 5.5 0.00012 34.7 7.9 61 91-151 56-124 (176)
72 COG3508 HmgA Homogentisate 1,2 83.9 3.1 6.6E-05 40.9 6.5 46 101-151 145-190 (427)
73 COG3822 ABC-type sugar transpo 83.1 1.2 2.6E-05 40.4 3.2 57 95-151 99-179 (225)
74 PF08007 Cupin_4: Cupin superf 82.6 2.8 6.2E-05 39.1 5.6 55 95-149 128-200 (319)
75 COG1482 ManA Phosphomannose is 78.3 1.4 3.1E-05 42.0 2.1 23 126-148 159-181 (312)
76 TIGR00218 manA mannose-6-phosp 78.2 1.1 2.4E-05 41.5 1.4 20 126-145 152-171 (302)
77 PF07385 DUF1498: Protein of u 78.0 4.7 0.0001 37.0 5.3 26 126-151 155-180 (225)
78 KOG2757 Mannose-6-phosphate is 75.5 5.9 0.00013 39.0 5.5 53 102-159 353-405 (411)
79 TIGR01221 rmlC dTDP-4-dehydror 75.3 22 0.00047 31.1 8.5 56 96-151 58-124 (176)
80 PF13759 2OG-FeII_Oxy_5: Putat 70.0 3.8 8.3E-05 31.6 2.4 25 123-147 64-88 (101)
81 COG1898 RfbC dTDP-4-dehydrorha 69.8 18 0.00039 31.8 6.7 56 97-152 60-125 (173)
82 COG1741 Pirin-related protein 65.2 24 0.00052 33.1 7.0 62 94-159 56-122 (276)
83 PRK00924 5-keto-4-deoxyuronate 64.6 18 0.00038 34.2 6.0 53 95-154 191-253 (276)
84 TIGR00218 manA mannose-6-phosp 63.0 16 0.00035 33.8 5.4 39 102-145 253-291 (302)
85 cd00038 CAP_ED effector domain 63.0 28 0.0006 24.8 5.7 37 102-138 35-72 (115)
86 PRK15131 mannose-6-phosphate i 59.4 19 0.00041 35.1 5.4 42 102-148 339-380 (389)
87 PF14499 DUF4437: Domain of un 58.3 8.2 0.00018 35.8 2.6 61 95-158 184-244 (251)
88 PRK15131 mannose-6-phosphate i 56.9 8.9 0.00019 37.3 2.7 24 126-149 238-261 (389)
89 PF00027 cNMP_binding: Cyclic 54.8 45 0.00097 23.3 5.5 37 102-138 17-54 (91)
90 PF09313 DUF1971: Domain of un 53.1 34 0.00075 26.5 4.9 59 92-150 13-75 (82)
91 PF06865 DUF1255: Protein of u 53.1 38 0.00082 27.2 5.3 45 102-149 41-85 (94)
92 PRK13918 CRP/FNR family transc 53.0 50 0.0011 27.4 6.3 36 103-138 27-63 (202)
93 smart00100 cNMP Cyclic nucleot 51.5 69 0.0015 22.7 6.1 38 102-139 35-73 (120)
94 PRK10402 DNA-binding transcrip 51.0 1.2E+02 0.0027 26.1 8.6 37 102-138 49-86 (226)
95 PRK11753 DNA-binding transcrip 50.0 1E+02 0.0022 25.8 7.7 37 102-138 38-75 (211)
96 PF06172 Cupin_5: Cupin superf 49.7 88 0.0019 26.3 7.2 62 93-154 52-120 (139)
97 PRK09391 fixK transcriptional 48.3 89 0.0019 27.2 7.4 55 102-156 56-111 (230)
98 KOG3706 Uncharacterized conser 48.1 5.7 0.00012 40.6 -0.1 45 115-159 371-415 (629)
99 PRK10579 hypothetical protein; 46.6 62 0.0014 26.1 5.5 45 102-149 41-85 (94)
100 KOG2543 Origin recognition com 44.3 27 0.00059 34.9 3.8 56 177-234 7-64 (438)
101 PRK09392 ftrB transcriptional 43.9 89 0.0019 26.8 6.7 35 102-136 48-82 (236)
102 PRK15186 AraC family transcrip 40.3 41 0.00089 31.3 4.2 44 104-151 40-83 (291)
103 PF05726 Pirin_C: Pirin C-term 40.1 99 0.0021 24.1 5.8 55 101-166 19-73 (104)
104 PLN02288 mannose-6-phosphate i 39.6 24 0.00051 34.7 2.6 29 126-154 252-280 (394)
105 PLN02288 mannose-6-phosphate i 36.7 55 0.0012 32.2 4.6 40 100-142 352-391 (394)
106 COG2850 Uncharacterized conser 35.5 16 0.00036 35.9 0.8 25 126-150 180-204 (383)
107 COG1482 ManA Phosphomannose is 35.0 82 0.0018 30.3 5.4 81 62-149 205-302 (312)
108 COG0678 AHP1 Peroxiredoxin [Po 32.5 26 0.00055 30.9 1.4 91 31-135 24-124 (165)
109 TIGR00156 conserved hypothetic 32.5 28 0.00061 29.2 1.6 45 102-146 71-115 (126)
110 PRK11161 fumarate/nitrate redu 31.7 1.8E+02 0.0039 24.9 6.6 36 102-137 55-91 (235)
111 PRK10202 ebgC cryptic beta-D-g 31.0 2.3E+02 0.005 23.9 7.0 45 102-146 65-127 (149)
112 PLN02868 acyl-CoA thioesterase 30.8 1.7E+02 0.0038 28.0 7.0 36 102-137 49-84 (413)
113 TIGR03697 NtcA_cyano global ni 29.9 1.1E+02 0.0025 24.9 4.9 35 103-137 12-47 (193)
114 PF04622 ERG2_Sigma1R: ERG2 an 29.8 1.2E+02 0.0026 27.6 5.3 61 99-170 116-176 (216)
115 COG3123 Uncharacterized protei 28.9 1.1E+02 0.0024 24.6 4.3 40 102-144 41-80 (94)
116 COG0664 Crp cAMP-binding prote 28.6 1.2E+02 0.0027 24.4 4.8 39 103-141 42-81 (214)
117 COG3806 ChrR Transcriptional a 25.7 1.1E+02 0.0024 28.1 4.3 57 94-159 140-196 (216)
118 TIGR01450 recC exodeoxyribonuc 25.5 68 0.0015 35.2 3.5 52 62-114 373-424 (1067)
119 cd08871 START_STARD10-like Lip 24.5 1.6E+02 0.0035 25.6 5.1 60 100-170 118-177 (222)
120 cd05793 S1_IF1A S1_IF1A: Trans 23.5 1.3E+02 0.0028 22.9 3.8 12 126-137 36-47 (77)
121 smart00652 eIF1a eukaryotic tr 22.5 1.3E+02 0.0029 23.1 3.7 28 110-137 15-52 (83)
122 PF06719 AraC_N: AraC-type tra 22.1 4.6E+02 0.01 21.7 8.9 54 101-159 22-78 (155)
123 COG3111 Periplasmic protein wi 21.9 91 0.002 26.5 2.8 36 101-136 70-105 (128)
124 cd00248 Mth938-like Mth938-lik 21.9 84 0.0018 25.0 2.6 27 111-145 6-32 (109)
125 PF05721 PhyH: Phytanoyl-CoA d 21.8 46 0.001 26.8 1.1 26 122-147 177-202 (211)
126 TIGR03805 beta_helix_1 paralle 21.4 48 0.001 31.1 1.2 16 128-143 7-22 (314)
127 cd03418 GRX_GRXb_1_3_like Glut 20.7 2.4E+02 0.0053 19.5 4.6 50 39-90 18-68 (75)
128 PF01987 AIM24: Mitochondrial 20.7 1.2E+02 0.0026 26.2 3.5 33 107-140 134-166 (215)
129 PRK15372 pathogenicity island 20.3 2.3E+02 0.005 27.0 5.4 76 103-191 55-134 (292)
130 PF13464 DUF4115: Domain of un 20.1 3.6E+02 0.0078 19.7 6.3 47 107-153 3-50 (77)
131 TIGR00365 monothiol glutaredox 20.0 2.3E+02 0.0049 21.8 4.6 52 39-92 35-86 (97)
No 1
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=100.00 E-value=3.2e-65 Score=436.12 Aligned_cols=177 Identities=60% Similarity=1.099 Sum_probs=173.2
Q ss_pred heeeEEecCC-CCCCCCCCCCCCCCcCCHhHHhhcCeEEEEeCCCCcCChHHHHHHHHhcCCCeeeEEEECCCCCCChHH
Q 025650 11 VIQAWYMDDS-DEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEE 89 (250)
Q Consensus 11 mv~aw~~d~~-~~d~rl~h~~~p~~~vs~~~L~~lGV~~~~~~~~~~e~~~~l~~L~~erGY~~~Dvi~l~p~~~Pn~e~ 89 (250)
|||||||++. ++|||+|||.+|++.+|+++|+++||.||++++++++.+++|++|++++||+++|+++++|+++|||++
T Consensus 1 m~qaw~mdd~~~~D~RlPhh~~p~~~vs~d~L~~lGVly~kld~D~~e~~~~L~~lr~e~~~~~~d~~~~~~e~~~nfde 80 (179)
T KOG2107|consen 1 MMQAWYMDDSPCEDQRLPHHKDPKKEVSLDELARLGVLYWKLDADNYELDEELDRLREERGYSYMDICTVCPETLPNFDE 80 (179)
T ss_pred CeeEEEcCCCCcccccCCCCCCCcccCCHHHHHhhCcEEEEecCchHHHHHHHHHHHHHcCCceeeEEEEchhhcccHHH
Confidence 8999999996 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEeeecCCCcccee
Q 025650 90 KIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFGLHSTVPMIIY 169 (250)
Q Consensus 90 kl~~F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF~~~~~P~GWv 169 (250)
|+++||+||+|+|||||||++|+||||||+++|.||||.|++||||++||||+||||+++++++|||||| +++|+ |+
T Consensus 81 Kvk~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n~vkamRlF--~~~p~-wt 157 (179)
T KOG2107|consen 81 KVKSFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSNYVKAMRLF--VGEPK-WT 157 (179)
T ss_pred HHHHHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchHHHHHHHHh--cCCcc-cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 99999 99
Q ss_pred ecCCCCcchHHHHHHHHHHHH
Q 025650 170 PQGRDMFKISCRRKLVTALSM 190 (250)
Q Consensus 170 ~~~R~~D~~~~R~~yl~~l~~ 190 (250)
|+|||+|+.++|++||..+++
T Consensus 158 a~nR~~d~l~~r~~yl~~i~~ 178 (179)
T KOG2107|consen 158 AYNRPHDELPARKQYLNFISQ 178 (179)
T ss_pred cCCCccccchhHHHHHhhccc
Confidence 999999999999999998753
No 2
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=100.00 E-value=1.6e-48 Score=330.89 Aligned_cols=154 Identities=56% Similarity=0.963 Sum_probs=132.4
Q ss_pred eeEEecCCC-CCCCCCCCCCCCCcCCHhHHhhcCeEEEEeCCCCcCChHHHHHHHHhcCCCeeeE--EEECCCCCCChHH
Q 025650 13 QAWYMDDSD-EDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDF--CEVCPEKLPNYEE 89 (250)
Q Consensus 13 ~aw~~d~~~-~d~rl~h~~~p~~~vs~~~L~~lGV~~~~~~~~~~e~~~~l~~L~~erGY~~~Dv--i~l~p~~~Pn~e~ 89 (250)
||||||+.. +|+++||+++|++++|+++|+++||.||++++++.+..++++++++.++|..+++ ++++++ +|++++
T Consensus 1 ~~~~~d~~~~~d~~~~~~~~p~~~~s~~~l~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~-~p~~~~ 79 (157)
T PF03079_consen 1 RAWYYDEEDPGDQRLPHHSDPDKIVSLLQLAGLGVLYWKLDADDPEDAEELQIIRAYRNYIDRDIDVVSLHPD-HPNYEA 79 (157)
T ss_dssp EEEEB-S--S-STCCEEE-SCHHCHHHHHCCCTCEEEEE-SCGGTTS-HHHHHHHHCHCHHCCCCEEEESTTT-STCHHH
T ss_pred CEEEECCCCcccCCCcccCCcccccCHHHhhCceEEEeecCCCccCCccHHHHHHHHcCCceEEEEEEecCCC-CcchhH
Confidence 699999976 7999999999999999999999999999999988778899999999999998876 555555 699999
Q ss_pred HHhccccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEeeecCCCcccee
Q 025650 90 KIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFGLHSTVPMIIY 169 (250)
Q Consensus 90 kl~~F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF~~~~~P~GWv 169 (250)
|+++||.||+|++||||||++|+|+|+||+.++.|+||.|++||||+|||||+|||+++++++|+||||| +++|+ |+
T Consensus 80 ~~~~f~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF--~~~~g-Wv 156 (157)
T PF03079_consen 80 KLKKFFEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLF--KDEPG-WV 156 (157)
T ss_dssp HHHHHCS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEE--SSCGG-EE
T ss_pred HhhhhheeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEee--cCCCC-cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 66666 99
Q ss_pred e
Q 025650 170 P 170 (250)
Q Consensus 170 ~ 170 (250)
|
T Consensus 157 a 157 (157)
T PF03079_consen 157 A 157 (157)
T ss_dssp S
T ss_pred C
Confidence 6
No 3
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=100.00 E-value=1.9e-45 Score=316.01 Aligned_cols=168 Identities=29% Similarity=0.440 Sum_probs=146.2
Q ss_pred heeeEEecCCCCCCCCCCCCCCCCcCCHhHHhhcCeEEEEeCCCCc------------CChHHHHHHHHhcCCCeeeEEE
Q 025650 11 VIQAWYMDDSDEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNY------------ETDEELKKIREDRGYSYMDFCE 78 (250)
Q Consensus 11 mv~aw~~d~~~~d~rl~h~~~p~~~vs~~~L~~lGV~~~~~~~~~~------------e~~~~l~~L~~erGY~~~Dvi~ 78 (250)
|++...+|+. .-..++++++ .+|+++||.+.++++... .+..++++|+++|||+++|||+
T Consensus 1 Ms~l~I~d~~------~~~~~~deia--~~l~~i~v~~e~we~~~~~~~~~~~~~i~~a~~~eid~l~~e~Gyk~~Dvvs 72 (181)
T COG1791 1 MSRLRIHDET------KIITNQDEIA--PELSKIEVSFERWEATALIKHGAEKEHIIDAYETEIDRLIRERGYKNRDVVS 72 (181)
T ss_pred CceEEEecCc------ccccCHhHhh--hhcccceeEhhhhhhccccccCcchhhhHhhHHHHHHHHHHhhCCceeeEEE
Confidence 7888888877 1123456677 889999999866663321 1478999999999999999999
Q ss_pred ECCCCCCChHHHHhccccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEe
Q 025650 79 VCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPF 158 (250)
Q Consensus 79 l~p~~~Pn~e~kl~~F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~Rl 158 (250)
++|++ |++++++++|++||+|++|||||||+|+|+|+|++.||+|++|.|++||||+||+||+|||+++++++|+||||
T Consensus 73 v~~~~-pk~del~akF~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRl 151 (181)
T COG1791 73 VSPSN-PKLDELRAKFLQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRL 151 (181)
T ss_pred eCCCC-ccHHHHHHHHHHHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEE
Confidence 99998 99999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eecCCCccceeecCCCCcchHHHHHHHHHHHH
Q 025650 159 GLHSTVPMIIYPQGRDMFKISCRRKLVTALSM 190 (250)
Q Consensus 159 F~~~~~P~GWv~~~R~~D~~~~R~~yl~~l~~ 190 (250)
| .+|.||+|++|..|-.+.|+.|+..+.+
T Consensus 152 F---~~~~gWVa~ytg~di~~~~~~y~~~i~~ 180 (181)
T COG1791 152 F---TEPEGWVAIYTGDDIADRFPKYIEEINQ 180 (181)
T ss_pred e---eCCCCceeeecCchhHHHHHHHHHHhhc
Confidence 9 6667799988877777777779887643
No 4
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=98.74 E-value=2.3e-08 Score=71.01 Aligned_cols=61 Identities=26% Similarity=0.412 Sum_probs=51.9
Q ss_pred cccccccCcc-eEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 94 FFEEHLHTDE-EIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 94 F~~EH~H~dd-EIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
-...|.|+.. |+.||++|++.+.+. |+ ++.+++||.+.+|+|+.|++....+..++.+-+|
T Consensus 10 ~~~~h~H~~~~e~~~vl~G~~~~~~~---~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 10 SIPPHRHPGEDEFFYVLSGEGTLTVD---GE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEEEESSEEEEEEEEESEEEEEET---TE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred CCCCEECCCCCEEEEEEECCEEEEEc---cE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 4569999987 999999999999863 44 4789999999999999999998888777766554
No 5
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.71 E-value=4.9e-08 Score=84.01 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=49.0
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCc
Q 025650 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNY 152 (250)
Q Consensus 95 ~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~ 152 (250)
+++|.|+.||.||+++|+....+++. ++.-.+.+++||+++||+|++|++...++..
T Consensus 41 ~d~H~~~tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~t~ 97 (159)
T TIGR03037 41 TDFHDDPGEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAGSI 97 (159)
T ss_pred cccccCCCceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCCcE
Confidence 56999999999999999999999864 4434589999999999999999999876543
No 6
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.71 E-value=5e-08 Score=78.42 Aligned_cols=61 Identities=21% Similarity=0.382 Sum_probs=50.3
Q ss_pred cccccccC-cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 94 FFEEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 94 F~~EH~H~-ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
...+|+|+ .+++.||++|.+.|.+. .+ ...+.+||+|.+|+|+.||+...++.....+-++
T Consensus 55 ~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~----~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v~ 116 (131)
T COG1917 55 VIPWHTHPLGEQTIYVLEGEGTVQLE-GE----KKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLVF 116 (131)
T ss_pred ccccccCCCcceEEEEEecEEEEEec-CC----ceEecCCCEEEECCCCeeeeccCCCCceeEEEEe
Confidence 45699998 78999999999999997 22 2679999999999999999998877644444455
No 7
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=5.3e-08 Score=79.10 Aligned_cols=55 Identities=25% Similarity=0.410 Sum_probs=46.0
Q ss_pred cccccCc-ceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEE
Q 025650 96 EEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKV 155 (250)
Q Consensus 96 ~EH~H~d-dEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA 155 (250)
.+|.|.. ||++||++|+|.+.++ |+ .+.+++||.+.||+|+.|++....+..++.
T Consensus 50 ~~~~H~~~dE~~~Vl~G~g~v~~~---~~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~l 105 (127)
T COG0662 50 SLHHHHHRDEHWYVLEGTGKVTIG---GE--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVL 105 (127)
T ss_pred CcccccCcceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCcceEE
Confidence 5666665 9999999999999997 33 478999999999999999999877655553
No 8
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=98.65 E-value=3.4e-07 Score=75.23 Aligned_cols=75 Identities=25% Similarity=0.420 Sum_probs=60.0
Q ss_pred eeEEEECCCCCCChHHHHhccccccccC-cceEEEEEeceEEEEEEeCC-CeEEEEEEecCCEEEeCCCCccccccCCCC
Q 025650 74 MDFCEVCPEKLPNYEEKIKNFFEEHLHT-DEEIRYCVAGSGYFDVRDRN-EKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (250)
Q Consensus 74 ~Dvi~l~p~~~Pn~e~kl~~F~~EH~H~-ddEIr~IleGsG~Fdvrd~~-d~wirI~~e~GDLI~VPAG~~HrF~l~~~~ 151 (250)
.-.+++.|+. ++..|.|. .+|++||++|++.+.+.+.+ ++.....+++||.+.||+|+.|++...++.
T Consensus 32 ~~~~~i~pg~----------~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~ 101 (146)
T smart00835 32 AARVNLEPGG----------MLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDE 101 (146)
T ss_pred EEEEEecCCc----------CcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCC
Confidence 4555777664 46699997 58999999999999997653 456678999999999999999999876666
Q ss_pred cEEEEEe
Q 025650 152 YIKVIPF 158 (250)
Q Consensus 152 ~vkA~Rl 158 (250)
.+..+=+
T Consensus 102 ~~~~l~~ 108 (146)
T smart00835 102 NLEFVAF 108 (146)
T ss_pred CEEEEEE
Confidence 6766633
No 9
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.62 E-value=1.1e-07 Score=83.00 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=48.5
Q ss_pred cccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCC
Q 025650 94 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (250)
Q Consensus 94 F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~ 150 (250)
-+.+|.|+.||.||+++|++...++| +++--.+.+.+||+++||+|++|++...++
T Consensus 46 r~d~H~~~tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~~~ 101 (177)
T PRK13264 46 RTDFHYDPGEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQREAG 101 (177)
T ss_pred ccccccCCCceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccCCC
Confidence 35689999999999999999999986 444346899999999999999999988554
No 10
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.55 E-value=6.1e-07 Score=78.89 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=64.4
Q ss_pred CeeeEEEECCCCCCChHHHHhcccc--ccccC---cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccc
Q 025650 72 SYMDFCEVCPEKLPNYEEKIKNFFE--EHLHT---DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFT 146 (250)
Q Consensus 72 ~~~Dvi~l~p~~~Pn~e~kl~~F~~--EH~H~---ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~ 146 (250)
-..++.++.|+... +.|+. -|.|. ..|++||++|+|.+.+.+.++....+.+++||++.||+|..|++.
T Consensus 68 L~~g~t~l~PG~~g------~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~i 141 (191)
T PRK04190 68 LNFGTTRLYPGKVG------DEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSV 141 (191)
T ss_pred eEEEEEEECCCcEe------cccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeE
Confidence 45699999988632 23322 26664 369999999999999987766666789999999999999999999
Q ss_pred cCCCCcEEEEEee
Q 025650 147 LDTDNYIKVIPFG 159 (250)
Q Consensus 147 l~~~~~vkA~RlF 159 (250)
...+..++.+-++
T Consensus 142 N~G~epl~fl~v~ 154 (191)
T PRK04190 142 NTGDEPLVFLACY 154 (191)
T ss_pred ECCCCCEEEEEEE
Confidence 8776677766666
No 11
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=98.51 E-value=5.8e-07 Score=73.76 Aligned_cols=84 Identities=24% Similarity=0.295 Sum_probs=60.3
Q ss_pred HHHhcCCCeeeEEEECCCCCCChHHHHhccccccccCcceEEEEEeceEEEEEEeCCC-----eEEEE--EEecCCEEEe
Q 025650 65 IREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNE-----KWIRI--WVKKGGMIVL 137 (250)
Q Consensus 65 L~~erGY~~~Dvi~l~p~~~Pn~e~kl~~F~~EH~H~ddEIr~IleGsG~Fdvrd~~d-----~wirI--~~e~GDLI~V 137 (250)
+....++ ..-.+.|.|+. +...|.|.-.|+.||++|+|++.+-+.++ +...- .+++||+++|
T Consensus 28 ~~~~~~~-~~~~~~i~pg~----------~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~v 96 (144)
T PF00190_consen 28 LLGLNGV-AVRRVLIEPGG----------LRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVV 96 (144)
T ss_dssp HHHHTTE-EEEEEEEETTE----------EEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE
T ss_pred eecccce-EEEeeehhcCC----------ccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceee
Confidence 3334454 34555667664 67899996699999999999999887665 23333 4999999999
Q ss_pred CCCCccccccCCCCcEEEEEee
Q 025650 138 PAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 138 PAG~~HrF~l~~~~~vkA~RlF 159 (250)
|+|..||...+.++....+.+|
T Consensus 97 P~G~~h~~~n~~~~~~~~~~~f 118 (144)
T PF00190_consen 97 PAGHPHWIINDGDDEALVLIIF 118 (144)
T ss_dssp -TT-EEEEEECSSSSEEEEEEE
T ss_pred ccceeEEEEcCCCCCCEEEEEE
Confidence 9999999998864444545555
No 12
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.34 E-value=3.4e-06 Score=80.40 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=56.2
Q ss_pred ccccccC-cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 95 FEEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 95 ~~EH~H~-ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
...|.|. .+|+.||++|++.+.+-|.+++-....+++||++.+|+|..|++....+..+..+-+|
T Consensus 258 ~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if 323 (367)
T TIGR03404 258 RELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVF 323 (367)
T ss_pred cCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEE
Confidence 5689999 4899999999999999766665555789999999999999999997766678888888
No 13
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.33 E-value=2.6e-06 Score=77.37 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=49.2
Q ss_pred ccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 97 EHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 97 EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
-|+|.++|..|||+|+|.|.+ |++| ..+++||+|.+|+|.+||+....+..++.| |+
T Consensus 195 ~~~H~~eh~~yiL~G~G~~~~---~g~~--~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l-~y 251 (260)
T TIGR03214 195 IETHVMEHGLYVLEGKGVYNL---DNNW--VPVEAGDYIWMGAYCPQACYAGGRGEFRYL-LY 251 (260)
T ss_pred cccccceeEEEEEeceEEEEE---CCEE--EEecCCCEEEECCCCCEEEEecCCCcEEEE-EE
Confidence 478889999999999999976 5777 579999999999999999998777777766 55
No 14
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.29 E-value=2e-06 Score=65.76 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=41.1
Q ss_pred ccccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEE
Q 025650 93 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIK 154 (250)
Q Consensus 93 ~F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vk 154 (250)
..+.+|.|+.-|+.||++|+|.+.++ ++. ..+++||++.+|+|..|.+...++....
T Consensus 14 ~~~~~h~h~~~~i~~v~~G~~~~~~~---~~~--~~l~~g~~~li~p~~~H~~~~~~~~~~~ 70 (136)
T PF02311_consen 14 FEFPPHWHDFYEIIYVLSGEGTLHID---GQE--YPLKPGDLFLIPPGQPHSYYPDSNEPWE 70 (136)
T ss_dssp -SEEEETT-SEEEEEEEEE-EEEEET---TEE--EEE-TT-EEEE-TTS-EEEEE-TTSEEE
T ss_pred CccCCEECCCEEEEEEeCCEEEEEEC---CEE--EEEECCEEEEecCCccEEEecCCCCCEE
Confidence 34678999999999999999999885 443 6799999999999999999988863333
No 15
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.10 E-value=1.3e-05 Score=70.39 Aligned_cols=89 Identities=20% Similarity=0.354 Sum_probs=55.1
Q ss_pred HHHHhcCCCeeeEEEECCCCCCChHHHHhcccc--ccccCc-------ceEEEEEeceEEEEEEeCCC----eEEEEEEe
Q 025650 64 KIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFE--EHLHTD-------EEIRYCVAGSGYFDVRDRNE----KWIRIWVK 130 (250)
Q Consensus 64 ~L~~erGY~~~Dvi~l~p~~~Pn~e~kl~~F~~--EH~H~d-------dEIr~IleGsG~Fdvrd~~d----~wirI~~e 130 (250)
++.++++..+ |+.++.|+.+.+ .|+. =|.|.. .|++++++|+|.|.+.+.++ +++.+.++
T Consensus 43 ~~~~~~~L~y-giTvi~Pg~vG~------E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~ 115 (182)
T PF06560_consen 43 EWLQKRNLRY-GITVIPPGKVGG------EYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAK 115 (182)
T ss_dssp -------EEE-EEEEE---EETT------EE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-
T ss_pred ccceeeeEEe-eeEEEcCcccCC------ccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeC
Confidence 4556677654 999999997663 3432 466654 79999999999999998887 78889999
Q ss_pred cCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 131 KGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 131 ~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
+||++.||+|.-|+-....+..++..-++
T Consensus 116 ~G~~v~IPp~yaH~tIN~g~~~L~~~~~~ 144 (182)
T PF06560_consen 116 PGDVVYIPPGYAHRTINTGDEPLVFAAWV 144 (182)
T ss_dssp TTEEEEE-TT-EEEEEE-SSS-EEEEEEE
T ss_pred CCCEEEECCCceEEEEECCCCcEEEEEEE
Confidence 99999999999999887766666644343
No 16
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.01 E-value=2.3e-05 Score=64.47 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=45.9
Q ss_pred cccccCcceEEEEEeceEEEE-EEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 96 EEHLHTDEEIRYCVAGSGYFD-VRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 96 ~EH~H~ddEIr~IleGsG~Fd-vrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
.+|.|..+|+.||++|++.|. +. +++. ..+++||.+.+|+|..|++...+ .+..+=.+
T Consensus 49 ~~h~h~~~E~~yVL~G~~~~~~i~--~g~~--~~L~aGD~i~~~~~~~H~~~N~e--~~~~l~v~ 107 (125)
T PRK13290 49 HLHYKNHLEAVYCIEGEGEVEDLA--TGEV--HPIRPGTMYALDKHDRHYLRAGE--DMRLVCVF 107 (125)
T ss_pred cceeCCCEEEEEEEeCEEEEEEcC--CCEE--EEeCCCeEEEECCCCcEEEEcCC--CEEEEEEE
Confidence 468876679999999999998 52 2444 67999999999999999999873 45544455
No 17
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.01 E-value=2.1e-05 Score=67.01 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=48.5
Q ss_pred cccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 96 EEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 96 ~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
..|.|..+|+.||++|++.+.+. |+. ..+++||.+.+|+|+.|++....+..++++-++
T Consensus 122 ~~~~h~~~E~~~Vl~G~~~~~~~---~~~--~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~ 180 (185)
T PRK09943 122 ERIKHQGEEIGTVLEGEIVLTIN---GQD--YHLVAGQSYAINTGIPHSFSNTSAGICRIISAH 180 (185)
T ss_pred cccccCCcEEEEEEEeEEEEEEC---CEE--EEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEe
Confidence 46778889999999999999885 333 679999999999999999998666666666444
No 18
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.00 E-value=2.3e-05 Score=74.80 Aligned_cols=64 Identities=22% Similarity=0.179 Sum_probs=53.1
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 95 ~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
...|.|..+|+.||++|++.+.+.+.+++.+.-.+++||++++|+|..|.+....+ ...++-.|
T Consensus 80 ~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~-~~~~l~vf 143 (367)
T TIGR03404 80 RELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDE-GCEFLLVF 143 (367)
T ss_pred CCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCC-CeEEEEEe
Confidence 35888988999999999999999877777765689999999999999999887643 45555555
No 19
>PLN00212 glutelin; Provisional
Probab=97.96 E-value=3.2e-05 Score=76.73 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=54.7
Q ss_pred ccccccccCcceEEEEEeceEEEEEEeCCCeE-------------------------EEEEEecCCEEEeCCCCcccccc
Q 025650 93 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKW-------------------------IRIWVKKGGMIVLPAGCYHRFTL 147 (250)
Q Consensus 93 ~F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~w-------------------------irI~~e~GDLI~VPAG~~HrF~l 147 (250)
.++..|.|.-.++.||+.|+|++.+-.++... ---.+++||+|.||||+.||...
T Consensus 91 gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN 170 (493)
T PLN00212 91 GLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYN 170 (493)
T ss_pred cccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECCCCeEEEEe
Confidence 47889999889999999999999987432100 01468999999999999999999
Q ss_pred CCCCcEEEEEee
Q 025650 148 DTDNYIKVIPFG 159 (250)
Q Consensus 148 ~~~~~vkA~RlF 159 (250)
+.+..+.++.++
T Consensus 171 ~Gd~~~v~v~~~ 182 (493)
T PLN00212 171 DGDAPVVALYVY 182 (493)
T ss_pred CCCCcEEEEEEE
Confidence 888888888777
No 20
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=97.93 E-value=4.1e-05 Score=68.67 Aligned_cols=63 Identities=25% Similarity=0.342 Sum_probs=54.2
Q ss_pred ccccCc-c--eEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 97 EHLHTD-E--EIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 97 EH~H~d-d--EIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
-|.|.. | |++|+++|+|.+.|.+.+++.+.+.+++||.|.||+|--|+-..+.+.-+..+-.|
T Consensus 95 ~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~ 160 (209)
T COG2140 95 LHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVY 160 (209)
T ss_pred cccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEE
Confidence 377764 4 59999999999999998999889999999999999999999887776667766666
No 21
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.89 E-value=2.6e-05 Score=71.31 Aligned_cols=69 Identities=22% Similarity=0.337 Sum_probs=53.8
Q ss_pred EEEECCCCCCChHHHHhccccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEE
Q 025650 76 FCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKV 155 (250)
Q Consensus 76 vi~l~p~~~Pn~e~kl~~F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA 155 (250)
.|.+.+.. |+ ..+.+|.|+.-|+.||++|+|.+.+.+ + ...+++||+++||+|..|.+...++.....
T Consensus 49 ~~~v~~~~-~~------~~~~~H~H~~~el~~v~~G~g~~~v~~---~--~~~l~~Gdl~~I~~~~~H~~~~~~~~~~~~ 116 (312)
T PRK13500 49 AVAVADRY-PQ------DVFAEHTHDFCELVIVWRGNGLHVLND---R--PYRITRGDLFYIHADDKHSYASVNDLVLQN 116 (312)
T ss_pred CEEEecCC-CC------CCCCccccceEEEEEEEcCeEEEEECC---E--EEeecCCeEEEECCCCeecccccCCceEEE
Confidence 36666553 53 247899999999999999999999963 2 367999999999999999998766544433
Q ss_pred E
Q 025650 156 I 156 (250)
Q Consensus 156 ~ 156 (250)
+
T Consensus 117 i 117 (312)
T PRK13500 117 I 117 (312)
T ss_pred E
Confidence 3
No 22
>PRK11171 hypothetical protein; Provisional
Probab=97.87 E-value=7.3e-05 Score=68.12 Aligned_cols=54 Identities=22% Similarity=0.410 Sum_probs=45.7
Q ss_pred cccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEE
Q 025650 98 HLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVI 156 (250)
Q Consensus 98 H~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~ 156 (250)
|.|..+|..||++|+|.+.+ +++| ..+++||.|.+|++..|+|....+..++.+
T Consensus 201 ~~~~~ee~i~Vl~G~~~~~~---~~~~--~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl 254 (266)
T PRK11171 201 ETHVMEHGLYVLEGKGVYRL---NNDW--VEVEAGDFIWMRAYCPQACYAGGPGPFRYL 254 (266)
T ss_pred cCCCceEEEEEEeCEEEEEE---CCEE--EEeCCCCEEEECCCCCEEEECCCCCcEEEE
Confidence 56888999999999999977 4676 569999999999999999997666556644
No 23
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=97.83 E-value=4.6e-05 Score=69.31 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=37.5
Q ss_pred cccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccc
Q 025650 94 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFT 146 (250)
Q Consensus 94 F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~ 146 (250)
.|.|| ++.||+.||++|+..|.+. |+ ...+++||.+++|+|..|-|.
T Consensus 168 sf~wt-l~~dEi~YVLEGe~~l~Id---G~--t~~l~pGDvlfIPkGs~~hf~ 214 (233)
T PRK15457 168 FFPWT-LNYDEIDMVLEGELHVRHE---GE--TMIAKAGDVMFIPKGSSIEFG 214 (233)
T ss_pred cccee-ccceEEEEEEEeEEEEEEC---CE--EEEeCCCcEEEECCCCeEEec
Confidence 35544 4579999999999999884 44 368999999999999995553
No 24
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.80 E-value=4.3e-05 Score=68.43 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=44.5
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCC
Q 025650 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (250)
Q Consensus 95 ~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~ 150 (250)
..+|.|+.-|+.||++|+|.+.+. ++ ...+++||+++||+|..|.+...++
T Consensus 31 ~~~H~H~~~ei~~i~~G~~~~~i~---~~--~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 31 FVEHTHQFCEIVIVWRGNGLHVLN---DH--PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CccccccceeEEEEecCceEEEEC---Ce--eeeecCCeEEEEcCCCcccccccCC
Confidence 568999999999999999999985 33 4679999999999999999886544
No 25
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.79 E-value=5.7e-05 Score=66.99 Aligned_cols=53 Identities=25% Similarity=0.341 Sum_probs=45.4
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCc
Q 025650 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNY 152 (250)
Q Consensus 95 ~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~ 152 (250)
+.+|.|+.-|+.|+.+|+|.+.+. ++ ...+++||+++||+|..|.+...++..
T Consensus 31 ~~~H~h~~~~l~~v~~G~~~~~i~---~~--~~~l~~g~l~li~~~~~H~~~~~~~~~ 83 (282)
T PRK13502 31 FAEHTHEFCELVMVWRGNGLHVLN---ER--PYRITRGDLFYIRAEDKHSYTSVNDLV 83 (282)
T ss_pred CCccccceEEEEEEecCcEEEEEC---CE--EEeecCCcEEEECCCCcccccccCCce
Confidence 678999999999999999999985 33 367999999999999999998755533
No 26
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=97.76 E-value=7.4e-05 Score=66.27 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=43.0
Q ss_pred cccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccC
Q 025650 94 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLD 148 (250)
Q Consensus 94 F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~ 148 (250)
...+|.|+.-|+.||++|++.+.+. ++ .+.+++||+++||+|..|.+...
T Consensus 35 ~~~~H~H~~~ei~~v~~G~~~~~i~---~~--~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 35 VSGLHQHDYYEFTLVLTGRYYQEIN---GK--RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred CCCCcccccEEEEEEEeceEEEEEC---CE--EEEECCCcEEEeCCCCccceeee
Confidence 4579999999999999999999985 33 46899999999999999976443
No 27
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.75 E-value=4e-05 Score=67.35 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=46.4
Q ss_pred ccccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCc
Q 025650 93 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNY 152 (250)
Q Consensus 93 ~F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~ 152 (250)
..+.+|.|+.-|+.||++|+|.+.+.+. ...+++||+++||+|+.|.+...++..
T Consensus 26 ~~~~~H~H~~~ei~~v~~G~~~~~i~~~-----~~~l~~g~~~~i~~~~~h~~~~~~~~~ 80 (278)
T PRK13503 26 AAFPEHHHDFHEIVIVEHGTGIHVFNGQ-----PYTLSGGTVCFVRDHDRHLYEHTDNLC 80 (278)
T ss_pred ccccccccCceeEEEEecCceeeEecCC-----cccccCCcEEEECCCccchhhhccCce
Confidence 3467999999999999999999999742 367999999999999999987665433
No 28
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=97.69 E-value=8.4e-05 Score=68.02 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=46.5
Q ss_pred cccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEE
Q 025650 94 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKV 155 (250)
Q Consensus 94 F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA 155 (250)
...+|.|++-|+.|+++|++.|.+. |+ .+.+.+||++++|+|+.|.+...++....+
T Consensus 38 m~~~HwH~e~Ei~yv~~G~~~~~i~---g~--~~~l~~Gd~ili~s~~~H~~~~~~~~~~~~ 94 (302)
T PRK10371 38 MPTSHWHGQVEVNVPFDGDVEYLIN---NE--KVQINQGHITLFWACTPHQLTDPGNCRSMA 94 (302)
T ss_pred CCCCCccccEEEEEecCCcEEEEEC---CE--EEEEcCCcEEEEecCCcccccccCCCceEE
Confidence 3579999999999999999999885 33 367999999999999999887655433333
No 29
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.62 E-value=0.0012 Score=56.70 Aligned_cols=129 Identities=13% Similarity=0.146 Sum_probs=83.1
Q ss_pred eEEEEeCCCCcCChHHHHHHHHhcCCCeeeEEEECCCCCCChHHHHhccccccccCc-ceEEEEEeceEEEEEEeCCCeE
Q 025650 46 VLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTD-EEIRYCVAGSGYFDVRDRNEKW 124 (250)
Q Consensus 46 V~~~~~~~~~~e~~~~l~~L~~erGY~~~Dvi~l~p~~~Pn~e~kl~~F~~EH~H~d-dEIr~IleGsG~Fdvrd~~d~w 124 (250)
+.|.+.-.++ ....++++-+.+|+... ++ + .-|---|.|+. -||..+++|++...+.+.++.
T Consensus 23 ~vY~~alkdt--ga~~~e~~~~~~gW~gs----W~-g---------~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~- 85 (163)
T COG4297 23 RVYRQALKDT--GAAQVEDHFKANGWFGS----WR-G---------GVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ- 85 (163)
T ss_pred Eeeehhcccc--hHHHHHHHHhhcCCccc----cc-c---------cccccccccCCcceEEEEecceeEEEecCCCCc-
Confidence 4565553332 24668999999999631 11 2 12334577776 799999999999999987776
Q ss_pred EEEEEecCCEEEeCCCCccccccCCCCcEEEEEeeecCCCcccee-ecCCCCcc-hHHHHHHHHHHHHHHhhhccc
Q 025650 125 IRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFGLHSTVPMIIY-PQGRDMFK-ISCRRKLVTALSMLLRNLCNS 198 (250)
Q Consensus 125 irI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF~~~~~P~GWv-~~~R~~D~-~~~R~~yl~~l~~~~~~~~~~ 198 (250)
.+.+..||.|+||||+-|+- +.++.+|+.|--+ |.|=. .+.++++. .+.-.+.++++-...-.+.|+
T Consensus 86 -el~v~~GDvlliPAGvGH~r-l~sS~DF~VvGaY-----p~G~q~diqtg~~t~~aear~~I~~vplp~~dPi~G 154 (163)
T COG4297 86 -ELEVGEGDVLLIPAGVGHCR-LHSSADFQVVGAY-----PPGQQADIQTGAPTDLAEARARIKSVPLPVQDPITG 154 (163)
T ss_pred -eeeecCCCEEEEecCccccc-ccCCCCeEEEccc-----CCcccccccCCCCccHHHHHHHHHcCCCcccCCccc
Confidence 47899999999999999974 5556678877666 32222 23555532 333334455544443333443
No 30
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=97.58 E-value=0.00023 Score=61.50 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=44.0
Q ss_pred ccccCcceEEEEEeceEEEEEEeC----CCeEEEEEEecCCEEEeCCCCccc-cccCCCCcEEEEEeeecCCCcc
Q 025650 97 EHLHTDEEIRYCVAGSGYFDVRDR----NEKWIRIWVKKGGMIVLPAGCYHR-FTLDTDNYIKVIPFGLHSTVPM 166 (250)
Q Consensus 97 EH~H~ddEIr~IleGsG~Fdvrd~----~d~wirI~~e~GDLI~VPAG~~Hr-F~l~~~~~vkA~RlF~~~~~P~ 166 (250)
.|.|+-|||++|++|+|+-.+... .++--.+...+++.+.||.+-.|. |..++..+++.+-+. ...|.
T Consensus 59 iHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlVii--SrpPv 131 (167)
T PF02041_consen 59 IHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVII--SRPPV 131 (167)
T ss_dssp EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEE--ESSS-
T ss_pred CccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEe--cCCCe
Confidence 899999999999999999999865 356667899999999999999999 666667888888777 44444
No 31
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.54 E-value=0.00022 Score=63.17 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=47.4
Q ss_pred ccccccC-cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEE
Q 025650 95 FEEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIP 157 (250)
Q Consensus 95 ~~EH~H~-ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~R 157 (250)
...|.|+ .-|+.|+++|++.+.+. ++ ...+++||++++|+|+.|.+...++.....+.
T Consensus 36 ~~~H~H~~~~~l~~~~~G~~~~~~~---~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i~ 94 (287)
T TIGR02297 36 MPVHFHDRYYQLHYLTEGSIALQLD---EH--EYSEYAPCFFLTPPSVPHGFVTDLDADGHVLT 94 (287)
T ss_pred CCCcccccceeEEEEeeCceEEEEC---CE--EEEecCCeEEEeCCCCccccccCCCcceEEEE
Confidence 4689998 68999999999998885 33 46799999999999999999876655444454
No 32
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=97.54 E-value=0.0004 Score=67.82 Aligned_cols=59 Identities=15% Similarity=0.288 Sum_probs=46.3
Q ss_pred cccccC-cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 96 EEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 96 ~EH~H~-ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
..|.|. .+|.+||++|++.+.+. |+ .+.+++||.+.+|+|+.|+|....+..++.+=.+
T Consensus 390 ~~h~H~~~~E~~~Vl~G~~~v~~d---g~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 390 SLQMHHHRAEHWIVVSGTARVTIG---DE--TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred CccccCCCceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 345544 46778999999999885 43 3689999999999999999998776667655555
No 33
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=97.51 E-value=0.00055 Score=60.81 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=55.1
Q ss_pred CeeeEEEECCCCCCChHHHHhccccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCC
Q 025650 72 SYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (250)
Q Consensus 72 ~~~Dvi~l~p~~~Pn~e~kl~~F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~ 151 (250)
...-++.+.|+. -+..|+|...|+.+||+|+ | .|.++ .+.+||+|.+|+|..|.++.+++.
T Consensus 127 ~~v~Ll~i~pG~----------~~p~H~H~G~E~tlVLeG~--f--~de~g-----~y~~Gd~i~~p~~~~H~p~a~~~~ 187 (215)
T TIGR02451 127 ARVRLLYIEAGQ----------SIPQHTHKGFELTLVLHGA--F--SDETG-----VYGVGDFEEADGSVQHQPRTVSGG 187 (215)
T ss_pred cEEEEEEECCCC----------ccCCCcCCCcEEEEEEEEE--E--EcCCC-----ccCCCeEEECCCCCCcCcccCCCC
Confidence 455677787764 3679999999999999999 3 33333 478999999999999999999877
Q ss_pred cEEEEEee
Q 025650 152 YIKVIPFG 159 (250)
Q Consensus 152 ~vkA~RlF 159 (250)
.+.++-..
T Consensus 188 ~Cicl~v~ 195 (215)
T TIGR02451 188 DCLCLAVL 195 (215)
T ss_pred CeEEEEEe
Confidence 77776555
No 34
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.001 Score=55.88 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=54.7
Q ss_pred eeeEEEECCCCCCChHHHHhccccccccCc-ceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCC
Q 025650 73 YMDFCEVCPEKLPNYEEKIKNFFEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (250)
Q Consensus 73 ~~Dvi~l~p~~~Pn~e~kl~~F~~EH~H~d-dEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~ 151 (250)
++-+|+|.|+. |. .-|.|.+ |-+.|+++|+......+. -...+.+.+||+|-||+|++|-...-++.
T Consensus 47 ~~~~vTi~pgA------ka----kaH~H~~hEtaIYvlsG~ah~w~G~r--LE~ha~~~pGDf~YiPpgVPHqp~N~S~e 114 (142)
T COG4101 47 CMHLVTIPPGA------KA----KAHLHEEHETAIYVLSGEAHTWYGNR--LEEHAEVGPGDFFYIPPGVPHQPANLSTE 114 (142)
T ss_pred eEEEEeeCCCc------cc----cccccccccEEEEEEeceeeeeeccc--eeeeEEecCCCeEEcCCCCCCcccccCCC
Confidence 67899999874 11 3799987 889999999998776532 23468899999999999999997655444
Q ss_pred cEEEE
Q 025650 152 YIKVI 156 (250)
Q Consensus 152 ~vkA~ 156 (250)
-..++
T Consensus 115 p~s~v 119 (142)
T COG4101 115 PLSAV 119 (142)
T ss_pred CeEEE
Confidence 44444
No 35
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=97.39 E-value=0.00058 Score=67.52 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=45.2
Q ss_pred ccccC-cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 97 EHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 97 EH~H~-ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
.|.|. .+|..||++|++.+.+. |+. ..+++||.|.+|+|+.|++....+..+..+=..
T Consensus 400 ~~~H~~~~E~~~VlsG~~~v~id---g~~--~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~ 458 (478)
T PRK15460 400 VQMHHHRAEHWVVVAGTAKVTID---GDI--KLLGENESIYIPLGATHCLENPGKIPLDLIEVR 458 (478)
T ss_pred cCCCCCCceEEEEEeeEEEEEEC---CEE--EEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 34443 36999999999999885 443 789999999999999999998766666644333
No 36
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=97.31 E-value=0.00037 Score=53.28 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=43.5
Q ss_pred eeeEEEECCCCCCChHHHHhccccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCC
Q 025650 73 YMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (250)
Q Consensus 73 ~~Dvi~l~p~~~Pn~e~kl~~F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~ 150 (250)
..-++.+.|+. -+..|.|...|-.|||+|+.. |.++ .+.+||++..|+|+.|.+..++.
T Consensus 25 ~~~L~r~~pG~----------~~p~H~H~g~ee~~VLeG~~~----d~~~-----~~~~G~~~~~p~g~~h~~~s~~g 83 (91)
T PF12973_consen 25 RVSLLRLEPGA----------SLPRHRHPGGEEILVLEGELS----DGDG-----RYGAGDWLRLPPGSSHTPRSDEG 83 (91)
T ss_dssp EEEEEEE-TTE----------EEEEEEESS-EEEEEEECEEE----ETTC-----EEETTEEEEE-TTEEEEEEESSC
T ss_pred EEEEEEECCCC----------CcCccCCCCcEEEEEEEEEEE----ECCc-----cCCCCeEEEeCCCCccccCcCCC
Confidence 44666777663 578999999888899999965 3344 25899999999999999997544
No 37
>PRK11171 hypothetical protein; Provisional
Probab=97.27 E-value=0.0012 Score=60.27 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=39.6
Q ss_pred CcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEE
Q 025650 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIK 154 (250)
Q Consensus 101 ~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vk 154 (250)
..+|+.||++|++.+.+. ++ ...+++||.+.+|+|..|+|....+....
T Consensus 82 ~~eE~~~VlsG~l~v~~~---g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~ 130 (266)
T PRK11171 82 GAETFLFVVEGEITLTLE---GK--THALSEGGYAYLPPGSDWTLRNAGAEDAR 130 (266)
T ss_pred CceEEEEEEeCEEEEEEC---CE--EEEECCCCEEEECCCCCEEEEECCCCCEE
Confidence 458999999999999874 44 36899999999999999999864443333
No 38
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.24 E-value=0.0006 Score=59.06 Aligned_cols=60 Identities=20% Similarity=0.358 Sum_probs=45.9
Q ss_pred cccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCC--CccccccCCCCcEEEEEee
Q 025650 94 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAG--CYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 94 F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG--~~HrF~l~~~~~vkA~RlF 159 (250)
.+.||.| +||.+|||+|++.+.+.+ + +..++|||.+--||| +-|-|...+..-++.+=.-
T Consensus 57 ~~H~Hs~-edEfv~ILeGE~~l~~d~--~---e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG 118 (161)
T COG3837 57 LRHWHSA-EDEFVYILEGEGTLREDG--G---ETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVG 118 (161)
T ss_pred ccccccc-CceEEEEEcCceEEEECC--e---eEEecCCceeeccCCCcceeEEeecCCceEEEEEec
Confidence 3455555 689999999999987752 2 356999999999999 9999998776555544333
No 39
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=97.22 E-value=0.0012 Score=56.06 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=52.8
Q ss_pred hcCCCeeeEEEECCCCCCChHHHHhccccccccCc-ceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccc
Q 025650 68 DRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFT 146 (250)
Q Consensus 68 erGY~~~Dvi~l~p~~~Pn~e~kl~~F~~EH~H~d-dEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~ 146 (250)
..+|+. -.+++.|++ -+..|.|.. +|.++|++|+|.+.+. |+. ..+.+||.+.||+|..|+..
T Consensus 60 ~~~~~v-kri~V~pG~----------~lSlq~H~~R~E~W~Vv~G~a~v~~~---~~~--~~~~~g~sv~Ip~g~~H~i~ 123 (151)
T PF01050_consen 60 GEGYKV-KRITVNPGK----------RLSLQYHHHRSEHWTVVSGTAEVTLD---DEE--FTLKEGDSVYIPRGAKHRIE 123 (151)
T ss_pred cCCEEE-EEEEEcCCC----------ccceeeecccccEEEEEeCeEEEEEC---CEE--EEEcCCCEEEECCCCEEEEE
Confidence 445543 556677664 345677764 9999999999999984 443 56999999999999999998
Q ss_pred cCCCCcEE
Q 025650 147 LDTDNYIK 154 (250)
Q Consensus 147 l~~~~~vk 154 (250)
...+..+.
T Consensus 124 n~g~~~L~ 131 (151)
T PF01050_consen 124 NPGKTPLE 131 (151)
T ss_pred CCCCcCcE
Confidence 65443344
No 40
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.11 E-value=0.0009 Score=63.52 Aligned_cols=52 Identities=27% Similarity=0.476 Sum_probs=44.9
Q ss_pred cccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCC
Q 025650 94 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (250)
Q Consensus 94 F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~ 149 (250)
--..|.|+.--+|||++|.|.|.+-|.+ ++.+++||+|+.|+++.|-.....
T Consensus 104 vApsHrHsqsAlRFvveG~Ga~T~VdGe----r~~M~~GDfilTP~w~wHdHgn~g 155 (351)
T COG3435 104 VAPSHRHNQSALRFVVEGKGAYTVVDGE----RTPMEAGDFILTPAWTWHDHGNEG 155 (351)
T ss_pred cCCcccccccceEEEEeccceeEeecCc----eeeccCCCEEEccCceeccCCCCC
Confidence 3679999999999999999999997532 588999999999999999866543
No 41
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=97.05 E-value=0.0018 Score=58.98 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=42.7
Q ss_pred ccccCc-ceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEE
Q 025650 97 EHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKV 155 (250)
Q Consensus 97 EH~H~d-dEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA 155 (250)
.|.|.. +|..||++|++...+. +++ ..+++||.+.+|+|..|+|....+...+.
T Consensus 74 ~~~~~g~ee~iyVl~G~l~v~~~---g~~--~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~ 128 (260)
T TIGR03214 74 GFGGEGIETFLFVISGEVNVTAE---GET--HELREGGYAYLPPGSKWTLANAQAEDARF 128 (260)
T ss_pred CCCCCceEEEEEEEeCEEEEEEC---CEE--EEECCCCEEEECCCCCEEEEECCCCCEEE
Confidence 455666 8999999999988764 444 58999999999999999998755544443
No 42
>PLN00212 glutelin; Provisional
Probab=97.01 E-value=0.0062 Score=60.79 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=54.5
Q ss_pred cccccccCc-ceEEEEEeceEEEEEEeCC-CeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 94 FFEEHLHTD-EEIRYCVAGSGYFDVRDRN-EKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 94 F~~EH~H~d-dEIr~IleGsG~Fdvrd~~-d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
.+..|.|.. -||.||++|+|...+-+.+ .+++.=.+.+||+++||+|-.|--.++.+ .+..+-+.
T Consensus 360 m~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~e-gfe~v~F~ 426 (493)
T PLN00212 360 LLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAERE-GCQYIAFK 426 (493)
T ss_pred ccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCC-ceEEEEee
Confidence 578999987 7999999999999998755 56888899999999999999998777754 46666454
No 43
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=96.89 E-value=0.0026 Score=60.60 Aligned_cols=57 Identities=25% Similarity=0.405 Sum_probs=47.1
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEE
Q 025650 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKV 155 (250)
Q Consensus 95 ~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA 155 (250)
-..|.|+..-++||++|+|.|.+- +++ ++..++||++++|++..|.+..+++.-+..
T Consensus 94 ~~~HRht~sAl~~vveG~G~~t~V--~g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~w 150 (335)
T TIGR02272 94 APSHRHTQSALRFIVEGKGAFTAV--DGE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIW 150 (335)
T ss_pred CCccccccceEEEEEEcCceEEEE--CCE--EEeeeCCCEEEeCCCeeEecccCCCCcEEE
Confidence 458999999999999999987774 454 688999999999999999988765544443
No 44
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=96.88 E-value=0.002 Score=48.14 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=35.9
Q ss_pred cccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccC
Q 025650 96 EEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLD 148 (250)
Q Consensus 96 ~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~ 148 (250)
.++... +|..+||+|++.+... ++. ++.++|||++++|+|..-.++..
T Consensus 20 ~~~~~~-~E~~~vleG~v~it~~--~G~--~~~~~aGD~~~~p~G~~~~w~v~ 67 (74)
T PF05899_consen 20 PWPYPE-DEFFYVLEGEVTITDE--DGE--TVTFKAGDAFFLPKGWTGTWEVR 67 (74)
T ss_dssp EEEESS-EEEEEEEEEEEEEEET--TTE--EEEEETTEEEEE-TTEEEEEEEE
T ss_pred EeeCCC-CEEEEEEEeEEEEEEC--CCC--EEEEcCCcEEEECCCCEEEEEEC
Confidence 344433 9999999999887653 555 47899999999999987666544
No 45
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=96.60 E-value=0.0054 Score=52.77 Aligned_cols=53 Identities=26% Similarity=0.423 Sum_probs=39.7
Q ss_pred cccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCC
Q 025650 96 EEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (250)
Q Consensus 96 ~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~ 149 (250)
+.|.-+.+|.||.++|.....+.+ +++.-.|.++.||+..+|++++|...-.+
T Consensus 47 DyHine~eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~ 99 (151)
T PF06052_consen 47 DYHINETEEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPA 99 (151)
T ss_dssp SEEE-SS-EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-T
T ss_pred ccccCCcceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCC
Confidence 578888899999999999999986 56777899999999999999999887654
No 46
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=96.56 E-value=0.018 Score=55.03 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=60.2
Q ss_pred hHHHHHHHH---hcCCCeeeEEEECCCCCCChHHHHhc---------cccccccCcceEEEEEeceEEEEEEeCCCeEEE
Q 025650 59 DEELKKIRE---DRGYSYMDFCEVCPEKLPNYEEKIKN---------FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIR 126 (250)
Q Consensus 59 ~~~l~~L~~---erGY~~~Dvi~l~p~~~Pn~e~kl~~---------F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wir 126 (250)
.+.|+++.+ ..+|...-+--++|.+-+.....+.. --..|.|+...|++|++|+|+-.+. |+ +
T Consensus 215 ~~aL~~~~~~~~~~~~~g~~l~y~NP~TG~~~~pti~~~~q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~ig---~~--~ 289 (335)
T TIGR02272 215 REALDDLTRTGEWDPWHGLKLRYVNPATGGYPMPTIGAFIQLLPKGFRTATYRSTDATVFCVVEGRGQVRIG---DA--V 289 (335)
T ss_pred HHHHHHHHhccCCCCCceEEEEEeCCCCCCCcchhHHHHHhccCCCCCCCCccccccEEEEEEeCeEEEEEC---CE--E
Confidence 455666553 24555444556677653432122221 1456889999999999999998884 33 5
Q ss_pred EEEecCCEEEeCCCCccccccCCC
Q 025650 127 IWVKKGGMIVLPAGCYHRFTLDTD 150 (250)
Q Consensus 127 I~~e~GDLI~VPAG~~HrF~l~~~ 150 (250)
+..++||+++||+...|.+..+++
T Consensus 290 ~~W~~gD~f~vPsW~~~~h~a~~d 313 (335)
T TIGR02272 290 FRFSPKDVFVVPSWHPVRFEASDD 313 (335)
T ss_pred EEecCCCEEEECCCCcEecccCCC
Confidence 889999999999998888877653
No 47
>PF12852 Cupin_6: Cupin
Probab=96.30 E-value=0.0086 Score=50.60 Aligned_cols=44 Identities=25% Similarity=0.490 Sum_probs=35.1
Q ss_pred eEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCC
Q 025650 104 EIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (250)
Q Consensus 104 EIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~ 150 (250)
-..+|++|++++.+.+. +. .+.+++||++++|.|..|++.-++.
T Consensus 37 ~fh~V~~G~~~l~~~~~-~~--~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 37 SFHVVLRGSCWLRVPGG-GE--PIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred EEEEEECCeEEEEEcCC-CC--eEEecCCCEEEEcCCCCeEeCCCCC
Confidence 35688999999988632 22 4889999999999999999965544
No 48
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.26 E-value=0.011 Score=51.60 Aligned_cols=84 Identities=19% Similarity=0.263 Sum_probs=58.4
Q ss_pred eeeEEEECCCCCC---ChHHHHhccccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCC
Q 025650 73 YMDFCEVCPEKLP---NYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (250)
Q Consensus 73 ~~Dvi~l~p~~~P---n~e~kl~~F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~ 149 (250)
.-|+|+...++ | .|-+.-..+|.|-+ ..||+-|||+|+....+. |+ .+..+|||+|.+|.|-.=-|+...
T Consensus 88 ~tdLvt~~~g~-~l~aG~m~~~~~tf~wtl-~yDe~d~VlEGrL~V~~~---g~--tv~a~aGDvifiPKgssIefst~g 160 (176)
T COG4766 88 TTDLVTEQEGS-RLGAGLMEMKNTTFPWTL-NYDEIDYVLEGRLHVRID---GR--TVIAGAGDVIFIPKGSSIEFSTTG 160 (176)
T ss_pred eeceeecccCC-ccccceeeeccccCccee-cccceeEEEeeeEEEEEc---CC--eEecCCCcEEEecCCCeEEEeccc
Confidence 44777776443 3 25555568888876 479999999999765543 33 377999999999999998888776
Q ss_pred CCcEEEEEeeecCCCcccee
Q 025650 150 DNYIKVIPFGLHSTVPMIIY 169 (250)
Q Consensus 150 ~~~vkA~RlF~~~~~P~GWv 169 (250)
. .+.+ |+ .=|.-|.
T Consensus 161 e--a~fl-yv---tyPanWq 174 (176)
T COG4766 161 E--AKFL-YV---TYPANWQ 174 (176)
T ss_pred e--EEEE-EE---Ecccccc
Confidence 5 4433 33 4454464
No 49
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=96.22 E-value=0.0094 Score=51.25 Aligned_cols=44 Identities=25% Similarity=0.521 Sum_probs=32.5
Q ss_pred CcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCC
Q 025650 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (250)
Q Consensus 101 ~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~ 149 (250)
+.||+-||++|+ |.+. .+|+. +..++||+|.+|+|..=.|....
T Consensus 94 ~YDEi~~VlEG~--L~i~-~~G~~--~~A~~GDvi~iPkGs~I~fst~~ 137 (152)
T PF06249_consen 94 TYDEIKYVLEGT--LEIS-IDGQT--VTAKPGDVIFIPKGSTITFSTPD 137 (152)
T ss_dssp SSEEEEEEEEEE--EEEE-ETTEE--EEEETT-EEEE-TT-EEEEEEEE
T ss_pred ecceEEEEEEeE--EEEE-ECCEE--EEEcCCcEEEECCCCEEEEecCC
Confidence 369999999987 5565 34654 67999999999999999896553
No 50
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=96.13 E-value=0.02 Score=47.19 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=36.2
Q ss_pred cccccCc-ceEEEEEeceEEEEEEeCCCeEEEEEEecCC-EEEeCCCCccccccCCCC
Q 025650 96 EEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGG-MIVLPAGCYHRFTLDTDN 151 (250)
Q Consensus 96 ~EH~H~d-dEIr~IleGsG~Fdvrd~~d~wirI~~e~GD-LI~VPAG~~HrF~l~~~~ 151 (250)
-+|.|.. .|.++++.|+..+.+.|...+ -.+.+...+ .+.||+|+.|.+..-+++
T Consensus 47 G~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ippg~w~~~~~~s~~ 103 (131)
T PF05523_consen 47 GWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIPPGVWHGIKNFSED 103 (131)
T ss_dssp EEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-TT-EEEEE---TT
T ss_pred cccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEECCchhhHhhccCCC
Confidence 4899975 899999999999999875544 456666665 799999999999766655
No 51
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.75 E-value=0.024 Score=50.65 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=40.9
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCC
Q 025650 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (250)
Q Consensus 95 ~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~ 150 (250)
...|-...-++-++++|+|.+.+. ++ +..+++||+|++|+|+.|.+...++
T Consensus 42 ~r~~~~~~~~i~~~~~G~~~~~~~---~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 42 DRPLGMKGYILNLTIRGQGVIFNG---GR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred ecCCCccceEEEEEEeccEEEecC---Ce--eEecCCCCEEEECCCCceeeccCCC
Confidence 456666677889999999998764 33 4789999999999999998876544
No 52
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=95.73 E-value=0.02 Score=47.29 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=43.0
Q ss_pred CeeeEEEECCCCCCChHHHHhccccccccC-cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccc
Q 025650 72 SYMDFCEVCPEKLPNYEEKIKNFFEEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFT 146 (250)
Q Consensus 72 ~~~Dvi~l~p~~~Pn~e~kl~~F~~EH~H~-ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~ 146 (250)
...=+-...|+. +|.+- ++|..+||+|.+.+.-+ +++. +.+++||.+++|+|..=--+
T Consensus 45 ~~~GiWe~TpG~-------------~r~~y~~~E~chil~G~v~~T~d--~Ge~--v~~~aGD~~~~~~G~~g~W~ 103 (116)
T COG3450 45 VETGIWECTPGK-------------FRVTYDEDEFCHILEGRVEVTPD--GGEP--VEVRAGDSFVFPAGFKGTWE 103 (116)
T ss_pred eeEeEEEecCcc-------------ceEEcccceEEEEEeeEEEEECC--CCeE--EEEcCCCEEEECCCCeEEEE
Confidence 334466777775 56663 48999999999988654 4554 78999999999999764433
No 53
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=94.86 E-value=0.048 Score=53.73 Aligned_cols=52 Identities=23% Similarity=0.318 Sum_probs=35.3
Q ss_pred cCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEE
Q 025650 100 HTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVI 156 (250)
Q Consensus 100 H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~ 156 (250)
.+.||+.++-+|++.+.-+ - | ++.+++||+++||+||.+|..+.+..+.-.+
T Consensus 144 aDGD~Li~~q~G~l~l~Te-~-G---~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~ 195 (424)
T PF04209_consen 144 ADGDELIFPQQGSLRLETE-F-G---RLDVRPGDYVVIPRGTRFRVELPGPARGYII 195 (424)
T ss_dssp SSEEEEEEEEES-EEEEET-T-E---EEEE-TTEEEEE-TT--EEEE-SSSEEEEEE
T ss_pred CCCCEEEEEEECCEEEEec-C-e---eEEEcCCeEEEECCeeEEEEEeCCCceEEEE
Confidence 3559999999999988765 2 2 4789999999999999999999854333333
No 54
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=94.10 E-value=0.096 Score=51.84 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=38.6
Q ss_pred cCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCC
Q 025650 100 HTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (250)
Q Consensus 100 H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~ 149 (250)
.+.|++.++-+|++.+.-+ -+ ++.+++||+++||.||.++..+.+
T Consensus 152 aDGD~Livpq~G~l~i~TE-fG----~L~v~pgei~VIPRG~~frv~l~~ 196 (438)
T PRK05341 152 ADGELLIVPQQGRLRLATE-LG----VLDVEPGEIAVIPRGVKFRVELPD 196 (438)
T ss_pred CCCCEEEEEEeCCEEEEEe-cc----ceEecCCCEEEEcCccEEEEecCC
Confidence 3559999999999998876 32 488999999999999999999754
No 55
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=94.04 E-value=0.15 Score=50.42 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=42.5
Q ss_pred cCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 100 HTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 100 H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
.+.|++.++-+|++.+.-+ -+ ++.+++||+++||.||.++.++....+.-.+-.|
T Consensus 146 aDGD~Livpq~G~l~i~TE-fG----~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~ 200 (429)
T TIGR01015 146 ADGDFLIVPQQGALLITTE-FG----RLLVEPNEICVIPRGVRFRVTVLEPARGYICEVY 200 (429)
T ss_pred cCCCEEEEEEeCcEEEEEe-cc----ceEecCCCEEEecCccEEEEeeCCCceEEEEecc
Confidence 3569999999999998876 33 4899999999999999999998643333333334
No 56
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.82 E-value=0.098 Score=40.06 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=18.3
Q ss_pred CCCeEEEEEEecCCEEEeCCCCccccc
Q 025650 120 RNEKWIRIWVKKGGMIVLPAGCYHRFT 146 (250)
Q Consensus 120 ~~d~wirI~~e~GDLI~VPAG~~HrF~ 146 (250)
.+-+.+++..++||+|++|+|.+|+--
T Consensus 76 ~gi~~~~~~Q~~Ge~V~i~pg~~H~v~ 102 (114)
T PF02373_consen 76 AGIPVYRFVQKPGEFVFIPPGAYHQVF 102 (114)
T ss_dssp TTS--EEEEEETT-EEEE-TT-EEEEE
T ss_pred cCcccccceECCCCEEEECCCceEEEE
Confidence 344567889999999999999999843
No 57
>PLN02658 homogentisate 1,2-dioxygenase
Probab=93.14 E-value=0.18 Score=49.96 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=38.5
Q ss_pred cCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCC
Q 025650 100 HTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (250)
Q Consensus 100 H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~ 149 (250)
.+.|++.++-+|++.+.-+ -+ ++.+++||+++||.||.++..+.+
T Consensus 145 aDGD~Livpq~G~l~i~TE-fG----~L~v~pgei~VIPRG~~frv~l~~ 189 (435)
T PLN02658 145 ADGDFLIVPQQGRLWIKTE-LG----KLQVSPGEIVVIPRGFRFAVDLPD 189 (435)
T ss_pred CCCCEEEEEEeCCEEEEEe-cc----ceEecCCCEEEecCccEEEEecCC
Confidence 3559999999999998876 33 488999999999999999999754
No 58
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=91.87 E-value=0.24 Score=45.59 Aligned_cols=50 Identities=24% Similarity=0.422 Sum_probs=42.8
Q ss_pred cccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccc
Q 025650 96 EEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFT 146 (250)
Q Consensus 96 ~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~ 146 (250)
..|+-+.+|.||-.+|++...|-+. ++.-.|.++.||+..+||.++|...
T Consensus 47 dyHieegeE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPq 96 (279)
T KOG3995|consen 47 DYHIEEGEEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQ 96 (279)
T ss_pred ccccCCcchhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChh
Confidence 3678888999999999999999854 4555799999999999999999754
No 59
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=91.83 E-value=0.42 Score=42.74 Aligned_cols=48 Identities=6% Similarity=0.090 Sum_probs=35.7
Q ss_pred eEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEE
Q 025650 104 EIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVI 156 (250)
Q Consensus 104 EIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~ 156 (250)
-+.++++|++.+... |+ .+.+.+||++++|++.+|.+..........+
T Consensus 73 ~l~~~~~G~~~~~~~---g~--~~~l~~G~~~l~~~~~p~~~~~~~~~~~~~l 120 (302)
T PRK09685 73 FTVFQLSGHAIIEQD---DR--QVQLAAGDITLIDASRPCSIYPQGLSEQISL 120 (302)
T ss_pred EEEEEecceEEEEEC---Ce--EEEEcCCCEEEEECCCCcEeecCCCceeEEE
Confidence 456678999998775 33 3679999999999999998876554333333
No 60
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=90.77 E-value=0.24 Score=45.79 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=30.5
Q ss_pred cccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCC
Q 025650 96 EEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (250)
Q Consensus 96 ~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~ 150 (250)
..|+|.-++-.+|++|....+=. +--...+.+|.+...|||..|.--..+.
T Consensus 50 pph~H~~~~~~~Vi~G~~~~~~~----~a~~~~l~~Gsy~~~PaG~~h~~~~~~~ 100 (251)
T PF14499_consen 50 PPHIHNADYRGTVISGELHNGDP----KAAAMWLPAGSYWFQPAGEPHITAAEGE 100 (251)
T ss_dssp --BEESS-EEEEEEESEEEETTE----E-----E-TTEEEEE-TT-EEEETTS-E
T ss_pred CCcceeeeEEEEEEEeEEEcCCC----cccceecCCCceEeccCCCceeeeccCc
Confidence 58999999999999998665322 2122458999999999998775444433
No 61
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=90.45 E-value=0.53 Score=40.23 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=25.2
Q ss_pred eEEEEEEecCCEEEeCCCCccccccC-CCCcEEEEEee
Q 025650 123 KWIRIWVKKGGMIVLPAGCYHRFTLD-TDNYIKVIPFG 159 (250)
Q Consensus 123 ~wirI~~e~GDLI~VPAG~~HrF~l~-~~~~vkA~RlF 159 (250)
..+.+.++|||+|.||+|-.|..... +++.-.++.++
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w 244 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYW 244 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEE
T ss_pred ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEE
Confidence 46899999999999999999998877 34424444444
No 62
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=90.03 E-value=0.93 Score=36.23 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=36.5
Q ss_pred EEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEe
Q 025650 105 IRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPF 158 (250)
Q Consensus 105 Ir~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~Rl 158 (250)
+.+.++|++.+... +. ++.+.|||+++++++-++++...+......+++
T Consensus 58 l~~~~~G~~~~~~~---g~--~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l~i 106 (172)
T PF14525_consen 58 LVLPLSGSARIEQG---GR--EVELAPGDVVLLDPGQPYRLEFSAGCRQLSLRI 106 (172)
T ss_pred EEEEccCCEEEEEC---CE--EEEEcCCeEEEEcCCCCEEEEECCCccEEEEEE
Confidence 44556666665543 33 578999999999999999999887766666655
No 63
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=88.53 E-value=1.4 Score=34.38 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=44.3
Q ss_pred CCeeeEEEECCCCCCChHHHHhccccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCC
Q 025650 71 YSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (250)
Q Consensus 71 Y~~~Dvi~l~p~~~Pn~e~kl~~F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~ 150 (250)
+-..=.+.|.|+. +|. ..+.+.+--++||+.|.....+++ . ...+.+||...||+|-+--+....+
T Consensus 11 ~fa~G~l~Lpp~~-----~K~----~k~s~~~~~vF~V~~G~v~Vti~~---~--~f~v~~G~~F~VP~gN~Y~i~N~~~ 76 (85)
T PF11699_consen 11 FFASGMLELPPGG-----EKP----PKNSRDNTMVFYVIKGKVEVTIHE---T--SFVVTKGGSFQVPRGNYYSIKNIGN 76 (85)
T ss_dssp S-EEEEEEE-TCC-----CEE----EEE--SEEEEEEEEESEEEEEETT---E--EEEEETT-EEEE-TT-EEEEEE-SS
T ss_pred CceeEEEEeCCCC-----ccC----CcccCCcEEEEEEEeCEEEEEEcC---c--EEEEeCCCEEEECCCCEEEEEECCC
Confidence 4455667777664 111 245666778999999999999973 2 4679999999999999988887655
Q ss_pred CcEE
Q 025650 151 NYIK 154 (250)
Q Consensus 151 ~~vk 154 (250)
...+
T Consensus 77 ~~a~ 80 (85)
T PF11699_consen 77 EEAK 80 (85)
T ss_dssp S-EE
T ss_pred CcEE
Confidence 4444
No 64
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=87.94 E-value=1.3 Score=41.05 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=42.0
Q ss_pred ccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEE
Q 025650 99 LHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVI 156 (250)
Q Consensus 99 ~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~ 156 (250)
+|--|-=.|||+|.|.|.++ ..| +.+++||+|-+-|--+.+...+....++.+
T Consensus 200 tHvmEHGlyvLeGk~vYrLn---~dw--v~V~aGD~mwm~A~cpQacyagG~g~frYL 252 (264)
T COG3257 200 THVMEHGLYVLEGKGVYRLN---NNW--VPVEAGDYIWMGAYCPQACYAGGRGAFRYL 252 (264)
T ss_pred hhhhhcceEEEecceEEeec---Cce--EEeecccEEEeeccChhhhccCCCCceEEE
Confidence 45556678999999999885 557 679999999999988888777666666655
No 65
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=87.91 E-value=0.77 Score=42.35 Aligned_cols=74 Identities=23% Similarity=0.282 Sum_probs=37.0
Q ss_pred ccccccCc---------ceEEEEE-eceEEEEEE-----eCCCeEEEEEEecCCEEEeCCCCcccccc--CCCCcEEEEE
Q 025650 95 FEEHLHTD---------EEIRYCV-AGSGYFDVR-----DRNEKWIRIWVKKGGMIVLPAGCYHRFTL--DTDNYIKVIP 157 (250)
Q Consensus 95 ~~EH~H~d---------dEIr~Il-eGsG~Fdvr-----d~~d~wirI~~e~GDLI~VPAG~~HrF~l--~~~~~vkA~R 157 (250)
|..|+|+. +|++|+. ...-=|.++ +.+. --.+.++-||.++||.| +|--.+ +...|+..+.
T Consensus 166 yPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~-d~~~~V~~~d~V~iP~g-yHp~~aapGy~~Yylw~m 243 (261)
T PF04962_consen 166 YPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQL-DEHYVVRNGDAVLIPSG-YHPVVAAPGYDMYYLWVM 243 (261)
T ss_dssp -SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSS-EEEEEEETTEEEEESTT-B-SEEEEEESSEEEEEEE
T ss_pred cCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCC-cEEEEEECCCEEEeCCC-CCCcCcCCCcCcEEEEEE
Confidence 88999998 8999984 322113331 1111 22478999999999999 773222 3345544332
Q ss_pred eeecCCCccceeecCCC
Q 025650 158 FGLHSTVPMIIYPQGRD 174 (250)
Q Consensus 158 lF~~~~~P~GWv~~~R~ 174 (250)
=- ..+. |..++-|
T Consensus 244 aG---~~r~-~~~~~Dp 256 (261)
T PF04962_consen 244 AG---ENRW-WQFFDDP 256 (261)
T ss_dssp ES---SS------CC-C
T ss_pred Ec---CCcc-ccccCCc
Confidence 22 1244 6665443
No 66
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=86.83 E-value=1.9 Score=39.86 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=38.1
Q ss_pred ceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCcccccc--CCCCcEEEEE
Q 025650 103 EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTL--DTDNYIKVIP 157 (250)
Q Consensus 103 dEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l--~~~~~vkA~R 157 (250)
+-+.||++|+....+. ++. ..+.+|++..+|+|..|.++. .+..+|..+|
T Consensus 84 e~~lfVv~Ge~tv~~~---G~t--h~l~eggyaylPpgs~~~~~N~~~~~~rfhw~r 135 (264)
T COG3257 84 ETFLFVVSGEITVKAE---GKT--HALREGGYAYLPPGSGWTLRNAQKEDSRFHWIR 135 (264)
T ss_pred eEEEEEEeeeEEEEEc---CeE--EEeccCCeEEeCCCCcceEeeccCCceEEEEEe
Confidence 5578999999777664 443 579999999999999999994 4445555544
No 67
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.78 E-value=1.3 Score=42.59 Aligned_cols=86 Identities=28% Similarity=0.451 Sum_probs=61.8
Q ss_pred ChHHHHHHHHhc------CCCeeeEEEECCCC----CCCh----HHHHhccc-cccccCcceEEEEEeceEEEEEEeCCC
Q 025650 58 TDEELKKIREDR------GYSYMDFCEVCPEK----LPNY----EEKIKNFF-EEHLHTDEEIRYCVAGSGYFDVRDRNE 122 (250)
Q Consensus 58 ~~~~l~~L~~er------GY~~~Dvi~l~p~~----~Pn~----e~kl~~F~-~EH~H~ddEIr~IleGsG~Fdvrd~~d 122 (250)
+++.|++|.+.. ||+- + -++|-+ +|.. +-+.+.|. .-|.|.+--|+-|++|+|+-.|. +
T Consensus 225 t~eAL~~la~~e~~dp~dG~~~-r--yvNP~TGg~~mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~Ig---~ 298 (351)
T COG3435 225 TREALERLARLEEPDPFDGYKM-R--YVNPVTGGYAMPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVEGSGYTIIG---G 298 (351)
T ss_pred HHHHHHHHHhccCCCCCCcceE-E--EecCCCCCCcCchHHHHHHhcCCcccCCceeccCCEEEEEEecceeEEEC---C
Confidence 467889998876 6542 2 233332 3332 22333443 58999999999999999998885 3
Q ss_pred eEEEEEEecCCEEEeCCCCccccccCCCC
Q 025650 123 KWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (250)
Q Consensus 123 ~wirI~~e~GDLI~VPAG~~HrF~l~~~~ 151 (250)
+ +....+||+++||.=-.|.+..+++.
T Consensus 299 ~--rf~~~~~D~fvVPsW~~~~~~~gs~d 325 (351)
T COG3435 299 E--RFDWSAGDIFVVPSWAWHEHVNGSED 325 (351)
T ss_pred E--EeeccCCCEEEccCcceeecccCCcc
Confidence 2 57789999999999999999998553
No 68
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=85.64 E-value=3.5 Score=34.77 Aligned_cols=74 Identities=20% Similarity=0.283 Sum_probs=54.2
Q ss_pred hcCCCeeeEEEECCCCCCChHHHHhccccccccC--cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCcccc
Q 025650 68 DRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHT--DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRF 145 (250)
Q Consensus 68 erGY~~~Dvi~l~p~~~Pn~e~kl~~F~~EH~H~--ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF 145 (250)
..||+..+.+.- +++ . -|+|- --|..|+++|+|..... .+++++ .++||.+..+-+.-.|..
T Consensus 32 gmGFS~h~T~i~-aGt-e-----------t~~~YknHlEAvyci~G~Gev~~~-~~G~~~--~i~pGt~YaLd~hD~H~l 95 (126)
T PF06339_consen 32 GMGFSFHETTIY-AGT-E-----------THIHYKNHLEAVYCIEGEGEVEDL-DTGEVH--PIKPGTMYALDKHDRHYL 95 (126)
T ss_pred CCCEEEEEEEEe-CCC-e-----------eEEEecCceEEEEEEeceEEEEEc-cCCcEE--EcCCCeEEecCCCccEEE
Confidence 457776666543 343 1 23332 36999999999997765 356664 589999999999999999
Q ss_pred ccCCCCcEEEEEee
Q 025650 146 TLDTDNYIKVIPFG 159 (250)
Q Consensus 146 ~l~~~~~vkA~RlF 159 (250)
.+.+ .++.+=.|
T Consensus 96 ra~~--dm~~vCVF 107 (126)
T PF06339_consen 96 RAKT--DMRLVCVF 107 (126)
T ss_pred EecC--CEEEEEEc
Confidence 9988 57766678
No 69
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=85.24 E-value=4.8 Score=32.49 Aligned_cols=63 Identities=22% Similarity=0.248 Sum_probs=41.2
Q ss_pred ccccccccCc-ceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCC--CCccccccCCC-CcEEEEEee
Q 025650 93 NFFEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPA--GCYHRFTLDTD-NYIKVIPFG 159 (250)
Q Consensus 93 ~F~~EH~H~d-dEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPA--G~~HrF~l~~~-~~vkA~RlF 159 (250)
.=|..|.|.+ |-|-|+++|+... +|.-+. +-.+++||+-.+=| |+.|-=...++ ..+..+.||
T Consensus 40 ~gf~~HPH~g~eivTyv~~G~~~H--~Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQlW 106 (107)
T PF02678_consen 40 AGFPMHPHRGFEIVTYVLEGELRH--RDSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQLW 106 (107)
T ss_dssp TEEEEEEECSEEEEEEEEESEEEE--EETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEEE
T ss_pred CCCCCcCCCCceEEEEEecCEEEE--ECCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEEc
Confidence 3468999997 7788999998754 454443 35699999966555 57786444443 556655554
No 70
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=85.16 E-value=3.9 Score=37.15 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=54.5
Q ss_pred CCC--hHHHHhccccccccCc--ceEEEEEeceEEEEEEeCCCeE-EEEEEec-CCEEEeCCCCccccccCCCCcEEEEE
Q 025650 84 LPN--YEEKIKNFFEEHLHTD--EEIRYCVAGSGYFDVRDRNEKW-IRIWVKK-GGMIVLPAGCYHRFTLDTDNYIKVIP 157 (250)
Q Consensus 84 ~Pn--~e~kl~~F~~EH~H~d--dEIr~IleGsG~Fdvrd~~d~w-irI~~e~-GDLI~VPAG~~HrF~l~~~~~vkA~R 157 (250)
+|. .+...+.|...|-|.. .|...|++|+..|.+-|.++.. .+..+.+ ++--++|++..|+....+++--..+.
T Consensus 11 ~~~~~~~~~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~ 90 (287)
T PRK12335 11 MPVWNKDTLPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLS 90 (287)
T ss_pred cCCCChhhchHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEE
Confidence 463 4556689999999963 7999999999999887655542 2233444 45556999999999987665555566
Q ss_pred ee
Q 025650 158 FG 159 (250)
Q Consensus 158 lF 159 (250)
|+
T Consensus 91 fy 92 (287)
T PRK12335 91 FY 92 (287)
T ss_pred EE
Confidence 66
No 71
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=84.58 E-value=5.5 Score=34.69 Aligned_cols=61 Identities=16% Similarity=0.350 Sum_probs=42.4
Q ss_pred HhccccccccCcceEEEEEeceEEEEEEe--CC----CeEEEEEEecCC--EEEeCCCCccccccCCCC
Q 025650 91 IKNFFEEHLHTDEEIRYCVAGSGYFDVRD--RN----EKWIRIWVKKGG--MIVLPAGCYHRFTLDTDN 151 (250)
Q Consensus 91 l~~F~~EH~H~ddEIr~IleGsG~Fdvrd--~~----d~wirI~~e~GD--LI~VPAG~~HrF~l~~~~ 151 (250)
+.--|+...|....+..++.|+.+--+-| ++ ++|..+.+.+++ .|.||+|.-|.|..-++.
T Consensus 56 RGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~ 124 (176)
T PF00908_consen 56 RGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD 124 (176)
T ss_dssp EEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE
T ss_pred EEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc
Confidence 33334444444568888999988655444 32 789999998887 699999999999977654
No 72
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.87 E-value=3.1 Score=40.93 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=38.2
Q ss_pred CcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCC
Q 025650 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (250)
Q Consensus 101 ~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~ 151 (250)
+.||+.++-.|+..|.-+- + .+.+++||+.+||.|+.-+...-++.
T Consensus 145 Dge~Livpq~G~l~l~te~-G----~l~v~pgeiavIPRG~~frve~~~~~ 190 (427)
T COG3508 145 DGELLIVPQQGELRLKTEL-G----VLEVEPGEIAVIPRGTTFRVELKDGE 190 (427)
T ss_pred CCCEEEEeecceEEEEEee-c----eEEecCCcEEEeeCCceEEEEecCCc
Confidence 3499999999999987763 2 58999999999999999988875544
No 73
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=83.09 E-value=1.2 Score=40.38 Aligned_cols=57 Identities=23% Similarity=0.270 Sum_probs=39.5
Q ss_pred ccccccCcceEEEEEeceEEEEEEeC------------------C------CeEEEEEEecCCEEEeCCCCccccccCCC
Q 025650 95 FEEHLHTDEEIRYCVAGSGYFDVRDR------------------N------EKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (250)
Q Consensus 95 ~~EH~H~ddEIr~IleGsG~Fdvrd~------------------~------d~wirI~~e~GDLI~VPAG~~HrF~l~~~ 150 (250)
-..|.|.-.-.=+|-.|.|.+-++-- | .-|-.+.++||.-|.+|+|++|+|-++..
T Consensus 99 tPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~~HsFwae~g 178 (225)
T COG3822 99 TPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGLYHSFWAEEG 178 (225)
T ss_pred CcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCceeeeeecCC
Confidence 45788874333345666666655410 1 11446889999999999999999999876
Q ss_pred C
Q 025650 151 N 151 (250)
Q Consensus 151 ~ 151 (250)
.
T Consensus 179 ~ 179 (225)
T COG3822 179 G 179 (225)
T ss_pred c
Confidence 4
No 74
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=82.57 E-value=2.8 Score=39.10 Aligned_cols=55 Identities=16% Similarity=0.325 Sum_probs=36.7
Q ss_pred ccccccCcceEEEEEeceEEEEEEeC----------------C--CeEEEEEEecCCEEEeCCCCccccccCC
Q 025650 95 FEEHLHTDEEIRYCVAGSGYFDVRDR----------------N--EKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (250)
Q Consensus 95 ~~EH~H~ddEIr~IleGsG~Fdvrd~----------------~--d~wirI~~e~GDLI~VPAG~~HrF~l~~ 149 (250)
|..|.=+.|=+.+-++|+=...|... + .....+.++|||++.||+|+.|.-+..+
T Consensus 128 ~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~ 200 (319)
T PF08007_consen 128 FGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTD 200 (319)
T ss_dssp SECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS
T ss_pred ccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCCC
Confidence 55666555777777889888888751 0 2255799999999999999999988877
No 75
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=78.29 E-value=1.4 Score=42.01 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEecCCEEEeCCCCccccccC
Q 025650 126 RIWVKKGGMIVLPAGCYHRFTLD 148 (250)
Q Consensus 126 rI~~e~GDLI~VPAG~~HrF~l~ 148 (250)
+|.++|||.+.|||||.|-.--+
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~~G 181 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYLKG 181 (312)
T ss_pred EEecCCCCEEEecCCCceeeccc
Confidence 68999999999999999976554
No 76
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=78.21 E-value=1.1 Score=41.46 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=18.3
Q ss_pred EEEEecCCEEEeCCCCcccc
Q 025650 126 RIWVKKGGMIVLPAGCYHRF 145 (250)
Q Consensus 126 rI~~e~GDLI~VPAG~~HrF 145 (250)
.+.+++||.|.||||+.|-.
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred ccccCCCCEEEeCCCCcccc
Confidence 58899999999999999984
No 77
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=78.03 E-value=4.7 Score=37.02 Aligned_cols=26 Identities=31% Similarity=0.587 Sum_probs=19.2
Q ss_pred EEEEecCCEEEeCCCCccccccCCCC
Q 025650 126 RIWVKKGGMIVLPAGCYHRFTLDTDN 151 (250)
Q Consensus 126 rI~~e~GDLI~VPAG~~HrF~l~~~~ 151 (250)
.|.+.||+-|.+|+|++|+|-..+..
T Consensus 155 ~l~L~PGESiTL~Pg~yH~Fw~e~g~ 180 (225)
T PF07385_consen 155 QLRLNPGESITLPPGIYHWFWGEGGD 180 (225)
T ss_dssp EEEE-TT-EEEE-TTEEEEEEE-TTS
T ss_pred eEEeCCCCeEeeCCCCeeeEEecCCC
Confidence 46789999999999999999987765
No 78
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=75.50 E-value=5.9 Score=39.04 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=41.7
Q ss_pred cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
.--|.+|++|+|+.... .++ .+.+++||++.|||...=.|...+++ ++.-|=|
T Consensus 353 ~~SIllv~~G~g~l~~~-t~~---~~~v~rG~V~fI~a~~~i~~~~~sd~-~~~yrAf 405 (411)
T KOG2757|consen 353 GPSILLVLKGSGILKTD-TDS---KILVNRGDVLFIPANHPIHLSSSSDP-FLGYRAF 405 (411)
T ss_pred CceEEEEEecceEEecC-CCC---ceeeccCcEEEEcCCCCceeeccCcc-eeeeecc
Confidence 45799999999997664 233 37899999999999999988888776 5555555
No 79
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=75.31 E-value=22 Score=31.11 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=42.8
Q ss_pred ccccc---CcceEEEEEeceEEEEEEeC--C----CeEEEEEEec--CCEEEeCCCCccccccCCCC
Q 025650 96 EEHLH---TDEEIRYCVAGSGYFDVRDR--N----EKWIRIWVKK--GGMIVLPAGCYHRFTLDTDN 151 (250)
Q Consensus 96 ~EH~H---~ddEIr~IleGsG~Fdvrd~--~----d~wirI~~e~--GDLI~VPAG~~HrF~l~~~~ 151 (250)
-+|.| .......++.|+.+-.+-|. + ++|..+.+.+ +-.|.||+|.-|-|..-+++
T Consensus 58 GlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~ 124 (176)
T TIGR01221 58 GLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE 124 (176)
T ss_pred EEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC
Confidence 35554 57899999999987555442 2 6788888887 55999999999999975543
No 80
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=70.04 E-value=3.8 Score=31.57 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=17.9
Q ss_pred eEEEEEEecCCEEEeCCCCcccccc
Q 025650 123 KWIRIWVKKGGMIVLPAGCYHRFTL 147 (250)
Q Consensus 123 ~wirI~~e~GDLI~VPAG~~HrF~l 147 (250)
.++.+..++||||+-|+-+.|.-..
T Consensus 64 ~~~~~~p~~G~lvlFPs~l~H~v~p 88 (101)
T PF13759_consen 64 PYYIVEPEEGDLVLFPSWLWHGVPP 88 (101)
T ss_dssp SEEEE---TTEEEEEETTSEEEE--
T ss_pred ceEEeCCCCCEEEEeCCCCEEeccC
Confidence 3778999999999999999999554
No 81
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=69.83 E-value=18 Score=31.84 Aligned_cols=56 Identities=20% Similarity=0.374 Sum_probs=42.6
Q ss_pred ccccC--cceEEEEEeceEEEEEEeC--C----CeEEEEEEecC--CEEEeCCCCccccccCCCCc
Q 025650 97 EHLHT--DEEIRYCVAGSGYFDVRDR--N----EKWIRIWVKKG--GMIVLPAGCYHRFTLDTDNY 152 (250)
Q Consensus 97 EH~H~--ddEIr~IleGsG~Fdvrd~--~----d~wirI~~e~G--DLI~VPAG~~HrF~l~~~~~ 152 (250)
.|.|. ..+...++.|+...-+.|. + ++|.-+.+.+- -+|.||+|.-|-|..-++.-
T Consensus 60 lHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~ 125 (173)
T COG1898 60 LHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA 125 (173)
T ss_pred EEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCce
Confidence 56664 3789999999987666553 3 35888888765 78999999999999776643
No 82
>COG1741 Pirin-related protein [General function prediction only]
Probab=65.20 E-value=24 Score=33.08 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=42.5
Q ss_pred cccccccCc-ceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCC--Cccccc-c-CCCCcEEEEEee
Q 025650 94 FFEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAG--CYHRFT-L-DTDNYIKVIPFG 159 (250)
Q Consensus 94 F~~EH~H~d-dEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG--~~HrF~-l-~~~~~vkA~RlF 159 (250)
.|.+|.|.+ +=|-|+++|+... +|..+. .-.+.+||+-..=|| |-|.=. . .+...+..+.+|
T Consensus 56 ~f~pHPHrg~etvTyvl~G~i~H--rDS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlW 122 (276)
T COG1741 56 GFPPHPHRGLETVTYVLDGEIEH--RDSLGN--KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLW 122 (276)
T ss_pred cCCCCCCCCcEEEEEEEccEEEE--eecCCc--eeeecccceeEEcCCCceeecccCCccCCCccceeeee
Confidence 799999998 6678999999664 454443 256889999766665 778632 3 233455555555
No 83
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=64.63 E-value=18 Score=34.17 Aligned_cols=53 Identities=25% Similarity=0.377 Sum_probs=35.0
Q ss_pred ccccccC-cceEEEEEeceEEEEEEe---------CCCeEEEEEEecCCEEEeCCCCccccccCCCCcEE
Q 025650 95 FEEHLHT-DEEIRYCVAGSGYFDVRD---------RNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIK 154 (250)
Q Consensus 95 ~~EH~H~-ddEIr~IleGsG~Fdvrd---------~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vk 154 (250)
|..|+|+ +.|++| ||++.. .-|+--.+.++-||.+++|+=--|.-. ++.+|--
T Consensus 191 yPPHkHDrr~E~Yl------Yf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~-gt~~y~f 253 (276)
T PRK00924 191 MPCHTHDRRMEVYF------YFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGV-GTSNYTF 253 (276)
T ss_pred CCCccCCCCcceEE------EEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCc-CccccEE
Confidence 7799999 467666 444431 112232488999999999998888654 3444443
No 84
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=63.04 E-value=16 Score=33.82 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=30.1
Q ss_pred cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCcccc
Q 025650 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRF 145 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF 145 (250)
.-.+.++++|++.... .++ .+.+++|+-++|||+....-
T Consensus 253 ~~~il~v~~G~~~i~~--~~~---~~~l~~G~~~~ipa~~~~~~ 291 (302)
T TIGR00218 253 SALILSVLEGSGRIKS--GGK---TLPLKKGESFFIPAHLGPFT 291 (302)
T ss_pred CcEEEEEEcceEEEEE--CCE---EEEEecccEEEEccCCccEE
Confidence 4678899999998754 222 47789999999999986543
No 85
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=63.00 E-value=28 Score=24.80 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=27.7
Q ss_pred cceEEEEEeceEEEEEEeCCCe-EEEEEEecCCEEEeC
Q 025650 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLP 138 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d~-wirI~~e~GDLI~VP 138 (250)
.+.+++|++|.......+.+++ .....+.+||++-.+
T Consensus 35 ~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (115)
T cd00038 35 ADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGEL 72 (115)
T ss_pred CCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChH
Confidence 4789999999998887755543 555678899987443
No 86
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=59.36 E-value=19 Score=35.12 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=31.5
Q ss_pred cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccC
Q 025650 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLD 148 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~ 148 (250)
.-.|.+|++|++.... .++ .+.+++|+-+.|||+....-..+
T Consensus 339 ~~~Illv~~G~~~i~~--~~~---~~~l~~G~~~fipa~~~~~~~~g 380 (389)
T PRK15131 339 SAAILFCVEGEAVLWK--GEQ---QLTLKPGESAFIAANESPVTVSG 380 (389)
T ss_pred CcEEEEEEcceEEEEe--CCe---EEEECCCCEEEEeCCCccEEEec
Confidence 4689999999999753 233 36799999999999877643333
No 87
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=58.27 E-value=8.2 Score=35.81 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=33.5
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEe
Q 025650 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPF 158 (250)
Q Consensus 95 ~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~Rl 158 (250)
-..|+|+..|=-++++|+..+...+..+. -.+.+|.++.-|+++.|.-..+++.-+..||-
T Consensus 184 g~i~~h~~~eraVvI~G~~~~~~~~~~~~---~~L~~GSYf~s~~~~~H~~~~~e~~~vlyIRt 244 (251)
T PF14499_consen 184 GRIHTHASNERAVVISGELDYQSYGASNF---GTLDPGSYFGSPGHITHGIFITEDECVLYIRT 244 (251)
T ss_dssp -SEEE--S-EEEEEEEEEEEETTEEEETT---EEEEE-TT-EE--E------EESS-EEEEEEE
T ss_pred CceeccCCceEEEEEEeEEEEeecccCCC---ccccCCcccccCCcccccccccCCCEEEEEEE
Confidence 45899999888999999998855433222 46889999999999999975665666666664
No 88
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=56.89 E-value=8.9 Score=37.33 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.1
Q ss_pred EEEEecCCEEEeCCCCccccccCC
Q 025650 126 RIWVKKGGMIVLPAGCYHRFTLDT 149 (250)
Q Consensus 126 rI~~e~GDLI~VPAG~~HrF~l~~ 149 (250)
.|.++|||.|.+|||+.|-.-.|.
T Consensus 238 ~v~l~pGeaifipAg~~HAyl~G~ 261 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAYLQGV 261 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEEcCCe
Confidence 489999999999999999876654
No 89
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=54.83 E-value=45 Score=23.27 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=29.1
Q ss_pred cceEEEEEeceEEEEEEeCCCe-EEEEEEecCCEEEeC
Q 025650 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLP 138 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d~-wirI~~e~GDLI~VP 138 (250)
.+.+++|++|.......+.+++ -+--.+.+||++-..
T Consensus 17 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~ 54 (91)
T PF00027_consen 17 CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEI 54 (91)
T ss_dssp ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGH
T ss_pred CCEEEEEEECceEEEeceecceeeeecceeeeccccce
Confidence 6899999999999988877665 335678899987443
No 90
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=53.12 E-value=34 Score=26.48 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=40.9
Q ss_pred hccccccccCc--ceEEEEEeceEEEEEEeCCCe--EEEEEEecCCEEEeCCCCccccccCCC
Q 025650 92 KNFFEEHLHTD--EEIRYCVAGSGYFDVRDRNEK--WIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (250)
Q Consensus 92 ~~F~~EH~H~d--dEIr~IleGsG~Fdvrd~~d~--wirI~~e~GDLI~VPAG~~HrF~l~~~ 150 (250)
+.|..-|.=.. =.-.-|++|+..|..-+.++. -..+...+|+.-+||+...|+-..-++
T Consensus 13 ~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 13 AALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred HHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 66666664433 245568999999999865422 235789999999999999999885443
No 91
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=53.07 E-value=38 Score=27.23 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=31.8
Q ss_pred cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCC
Q 025650 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~ 149 (250)
..|+-=|++|++...+. .++.| ....+|+-..|||+..-.....+
T Consensus 41 ~~E~M~vvsG~l~V~lp-g~~ew--~~~~aGesF~VpanssF~v~v~~ 85 (94)
T PF06865_consen 41 APERMEVVSGELEVKLP-GEDEW--QTYSAGESFEVPANSSFDVKVKE 85 (94)
T ss_dssp S-EEEEEEESEEEEEET-T-SS---EEEETT-EEEE-TTEEEEEEESS
T ss_pred CCEEEEEEEeEEEEEcC-CCccc--EEeCCCCeEEECCCCeEEEEECc
Confidence 36888899999998887 34568 56999999999999876655544
No 92
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=53.03 E-value=50 Score=27.45 Aligned_cols=36 Identities=11% Similarity=0.048 Sum_probs=26.9
Q ss_pred ceEEEEEeceEEEEEEeCCCeE-EEEEEecCCEEEeC
Q 025650 103 EEIRYCVAGSGYFDVRDRNEKW-IRIWVKKGGMIVLP 138 (250)
Q Consensus 103 dEIr~IleGsG~Fdvrd~~d~w-irI~~e~GDLI~VP 138 (250)
+.+++|++|.......+.+|+. +--.+.+||++--+
T Consensus 27 ~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 27 DMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred CeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 6799999999988777666663 33345999998543
No 93
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=51.46 E-value=69 Score=22.72 Aligned_cols=38 Identities=11% Similarity=-0.052 Sum_probs=27.8
Q ss_pred cceEEEEEeceEEEEEEeCCC-eEEEEEEecCCEEEeCC
Q 025650 102 DEEIRYCVAGSGYFDVRDRNE-KWIRIWVKKGGMIVLPA 139 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d-~wirI~~e~GDLI~VPA 139 (250)
.+.+++|++|.......+.++ ....-.+.+||++-...
T Consensus 35 ~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~ 73 (120)
T smart00100 35 GDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELA 73 (120)
T ss_pred CCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhh
Confidence 478999999999887765444 34555778999885543
No 94
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=51.02 E-value=1.2e+02 Score=26.11 Aligned_cols=37 Identities=14% Similarity=-0.024 Sum_probs=27.5
Q ss_pred cceEEEEEeceEEEEEEeCCCe-EEEEEEecCCEEEeC
Q 025650 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLP 138 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d~-wirI~~e~GDLI~VP 138 (250)
.+.+++|++|.......+.+|+ .+--.+.+||++-..
T Consensus 49 ~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 49 PSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred CceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEee
Confidence 4789999999998877666665 333457899998654
No 95
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=50.01 E-value=1e+02 Score=25.75 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=27.1
Q ss_pred cceEEEEEeceEEEEEEeCCCe-EEEEEEecCCEEEeC
Q 025650 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLP 138 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d~-wirI~~e~GDLI~VP 138 (250)
.+.+++|++|.......+.+++ .+--.+.+||++-..
T Consensus 38 ~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 75 (211)
T PRK11753 38 AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGEL 75 (211)
T ss_pred CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeeh
Confidence 4689999999998776655544 444568999998443
No 96
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=49.72 E-value=88 Score=26.35 Aligned_cols=62 Identities=21% Similarity=0.303 Sum_probs=41.6
Q ss_pred ccccccccCcceEEEEEec-eEEEEEEeCCCeEEEEEEec----CC--EEEeCCCCccccccCCCCcEE
Q 025650 93 NFFEEHLHTDEEIRYCVAG-SGYFDVRDRNEKWIRIWVKK----GG--MIVLPAGCYHRFTLDTDNYIK 154 (250)
Q Consensus 93 ~F~~EH~H~ddEIr~IleG-sG~Fdvrd~~d~wirI~~e~----GD--LI~VPAG~~HrF~l~~~~~vk 154 (250)
.+-.+|.=.-||+.+...| ...+.+=+.|+++.++.+.+ |. .++||+|+...-.+.+...+.
T Consensus 52 ~~S~~Hrv~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~y~ 120 (139)
T PF06172_consen 52 EFSAWHRVDSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGDYS 120 (139)
T ss_dssp BEEEEEEESSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSSEE
T ss_pred CCCccEEcCCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCCEE
Confidence 4667888778999999999 45555555788888777744 33 489999986665434443333
No 97
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=48.26 E-value=89 Score=27.18 Aligned_cols=55 Identities=18% Similarity=0.121 Sum_probs=36.3
Q ss_pred cceEEEEEeceEEEEEEeCCCe-EEEEEEecCCEEEeCCCCccccccCCCCcEEEE
Q 025650 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVI 156 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d~-wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~ 156 (250)
-+.+++|++|......-+.+|+ .+--.+.+||++-...+..+.++...-.....+
T Consensus 56 ~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~ 111 (230)
T PRK09391 56 ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVR 111 (230)
T ss_pred CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEE
Confidence 4679999999998877666655 343456899998766665555554443334433
No 98
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.10 E-value=5.7 Score=40.57 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=32.9
Q ss_pred EEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 115 FDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 115 Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
|+-.+.+.-++...++|||||-+|.|+-|--.+.+.-+-..+-+.
T Consensus 371 f~eedlgePV~e~vle~GDllYfPRG~IHQA~t~~~vHSlHvTlS 415 (629)
T KOG3706|consen 371 FTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADTPALVHSLHVTLS 415 (629)
T ss_pred CChhHhCCchHHhhcCCCcEEEecCcceeeccccchhceeEEEee
Confidence 333333444777889999999999999999888776555555554
No 99
>PRK10579 hypothetical protein; Provisional
Probab=46.59 E-value=62 Score=26.07 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=35.2
Q ss_pred cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCC
Q 025650 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~ 149 (250)
..|+-=|++|++...+. .++.| ....+|+-..|||+-.-.-....
T Consensus 41 ~~E~MeivsG~l~V~Lp-g~~ew--~~~~aG~sF~VpanssF~l~v~~ 85 (94)
T PRK10579 41 EPEEMTVISGALNVLLP-GATDW--QVYEAGEVFNVPGHSEFHLQVAE 85 (94)
T ss_pred CcEEEEEEeeEEEEECC-CCccc--EEeCCCCEEEECCCCeEEEEECc
Confidence 36888899999998886 34667 57899999999999875554433
No 100
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=44.29 E-value=27 Score=34.89 Aligned_cols=56 Identities=39% Similarity=0.614 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHHHHhhhcccccccceeeeeeecc-chhhHHHHHHHhhccc-hhhhhh
Q 025650 177 KISCRRKLVTALSMLLRNLCNSLLIGSIVLALINKE-TSVYMVCLCLRLLELP-VWFNCL 234 (250)
Q Consensus 177 ~~~~R~~yl~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 234 (250)
..++|...+..|+..+.+ |+.++.|+.+-...-. .-+|.+-.+||.+++| ||.||.
T Consensus 7 ~v~~Re~qi~~L~~Llg~--~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ 64 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN--NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCV 64 (438)
T ss_pred CccchHHHHHHHHHHhCC--CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehH
Confidence 467888889999887643 6667888755444444 6688999999999887 899996
No 101
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=43.92 E-value=89 Score=26.81 Aligned_cols=35 Identities=3% Similarity=0.010 Sum_probs=25.6
Q ss_pred cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEE
Q 025650 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIV 136 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~ 136 (250)
.+.+++|++|.........+++..--.+.+||++-
T Consensus 48 ~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g 82 (236)
T PRK09392 48 ADFLFVVLDGLVELSASSQDRETTLAILRPVSTFI 82 (236)
T ss_pred cceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhh
Confidence 47899999999987765444444445678899764
No 102
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=40.33 E-value=41 Score=31.34 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=33.0
Q ss_pred eEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCC
Q 025650 104 EIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (250)
Q Consensus 104 EIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~ 151 (250)
=+.++..|.... +..++.+ +.+.+|.+|++|.+..|.+...+..
T Consensus 40 ~li~v~~G~~~i--~~~~g~~--l~i~~p~~~~~p~~~~~~~~~~~~~ 83 (291)
T PRK15186 40 VLIKLTTGKISI--TTSSGEY--ITASGPMLIFLAKDQTIHITMEETH 83 (291)
T ss_pred EEEEeccceEEE--EeCCCce--EEeCCCeEEEEeCCcEEEEEecccC
Confidence 456777777654 4344544 7899999999999999999877653
No 103
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=40.14 E-value=99 Score=24.06 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=34.9
Q ss_pred CcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEeeecCCCcc
Q 025650 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFGLHSTVPM 166 (250)
Q Consensus 101 ~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF~~~~~P~ 166 (250)
..+=..|+++|++.+ . ++. ..+++|+++++..|..=.++.++ .....| |+ .++|-
T Consensus 19 ~~~~~iyv~~G~~~v--~--~~~---~~~~~~~~~~l~~g~~i~~~a~~-~~a~~l-ll--~GePl 73 (104)
T PF05726_consen 19 GHNAFIYVLEGSVEV--G--GEE---DPLEAGQLVVLEDGDEIELTAGE-EGARFL-LL--GGEPL 73 (104)
T ss_dssp T-EEEEEEEESEEEE--T--TTT---EEEETTEEEEE-SECEEEEEESS-SSEEEE-EE--EE---
T ss_pred CCEEEEEEEECcEEE--C--CCc---ceECCCcEEEECCCceEEEEECC-CCcEEE-EE--EccCC
Confidence 346788999999764 2 222 56899999999988777788774 345544 44 36665
No 104
>PLN02288 mannose-6-phosphate isomerase
Probab=39.64 E-value=24 Score=34.69 Aligned_cols=29 Identities=14% Similarity=0.021 Sum_probs=23.6
Q ss_pred EEEEecCCEEEeCCCCccccccCCCCcEE
Q 025650 126 RIWVKKGGMIVLPAGCYHRFTLDTDNYIK 154 (250)
Q Consensus 126 rI~~e~GDLI~VPAG~~HrF~l~~~~~vk 154 (250)
.|.++||+-|.+|||+.|-.--|..-.++
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~G~~vE~M 280 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLSGECIECM 280 (394)
T ss_pred eEecCCCCEEEecCCCCceecCCCeEEee
Confidence 48899999999999999988766554443
No 105
>PLN02288 mannose-6-phosphate isomerase
Probab=36.68 E-value=55 Score=32.17 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=29.8
Q ss_pred cCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCc
Q 025650 100 HTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCY 142 (250)
Q Consensus 100 H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~ 142 (250)
++.-.|.+|++|++..... ++. ..+.+++|+.+.|||+..
T Consensus 352 ~~gp~Illv~~G~~~i~~~--~~~-~~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 352 VPGPSVFLVIEGEGVLSTG--SSE-DGTAAKRGDVFFVPAGTE 391 (394)
T ss_pred CCCCEEEEEEcCEEEEecC--Ccc-ceEEEeceeEEEEeCCCc
Confidence 3456899999999987543 222 236789999999999754
No 106
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=35.47 E-value=16 Score=35.91 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.2
Q ss_pred EEEEecCCEEEeCCCCccccccCCC
Q 025650 126 RIWVKKGGMIVLPAGCYHRFTLDTD 150 (250)
Q Consensus 126 rI~~e~GDLI~VPAG~~HrF~l~~~ 150 (250)
...++|||++-||+|..|.-.+..+
T Consensus 180 d~vlepGDiLYiPp~~~H~gvae~d 204 (383)
T COG2850 180 DEVLEPGDILYIPPGFPHYGVAEDD 204 (383)
T ss_pred hhhcCCCceeecCCCCCcCCccccc
Confidence 4578999999999999999887643
No 107
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=34.95 E-value=82 Score=30.27 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=51.1
Q ss_pred HHHHHHhcCCCeeeEEEECCCCCCChHHH-------Hhcc--cccc--------ccCcceEEEEEeceEEEEEEeCCCeE
Q 025650 62 LKKIREDRGYSYMDFCEVCPEKLPNYEEK-------IKNF--FEEH--------LHTDEEIRYCVAGSGYFDVRDRNEKW 124 (250)
Q Consensus 62 l~~L~~erGY~~~Dvi~l~p~~~Pn~e~k-------l~~F--~~EH--------~H~ddEIr~IleGsG~Fdvrd~~d~w 124 (250)
+.+|++=.-++..|+.++... |..+.. .+.| +.+- .+..-.|.++++|+|.... +++
T Consensus 205 ~~~lr~l~~~k~~~~~~~~~~--~~~~~~~~~~~v~~~~F~l~~~~i~~~~~~~~~~~~~il~v~eG~~~l~~---~~~- 278 (312)
T COG1482 205 IGELRELHLFKAKDVITLPTQ--PRKQGAELTYPVPNEDFALYKWDISGTAEFIKQESFSILLVLEGEGTLIG---GGQ- 278 (312)
T ss_pred chhHHhhhhccccchhhcCCc--ccccCceEEEeccccceEEEEEeccChhhhccCCCcEEEEEEcCeEEEec---CCE-
Confidence 466777778888888888522 111111 1111 1111 1335789999999998654 344
Q ss_pred EEEEEecCCEEEeCCCCccccccCC
Q 025650 125 IRIWVKKGGMIVLPAGCYHRFTLDT 149 (250)
Q Consensus 125 irI~~e~GDLI~VPAG~~HrF~l~~ 149 (250)
...+++|+-++|||...-+.--+.
T Consensus 279 -~~~l~~G~s~~ipa~~~~~~i~g~ 302 (312)
T COG1482 279 -TLKLKKGESFFIPANDGPYTIEGE 302 (312)
T ss_pred -EEEEcCCcEEEEEcCCCcEEEEec
Confidence 378999999999999776554443
No 108
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.50 E-value=26 Score=30.90 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=55.3
Q ss_pred CCCCcCCHhHHhh-cCeEEEEeCCCC---------cCChHHHHHHHHhcCCCeeeEEEECCCCCCChHHHHhcccccccc
Q 025650 31 DPKEFVSLDQLSE-LGVLSWRLDADN---------YETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLH 100 (250)
Q Consensus 31 ~p~~~vs~~~L~~-lGV~~~~~~~~~---------~e~~~~l~~L~~erGY~~~Dvi~l~p~~~Pn~e~kl~~F~~EH~H 100 (250)
++...+|-++|-+ --|..+-++..= +.+.+..++++ ++|-- +++.++=+. ...-+-...+..
T Consensus 24 ~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~-~kGVD--~I~cVSVND-----~FVm~AWak~~g 95 (165)
T COG0678 24 DGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFK-AKGVD--EIYCVSVND-----AFVMNAWAKSQG 95 (165)
T ss_pred CCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHH-HcCCc--eEEEEEeCc-----HHHHHHHHHhcC
Confidence 4556677788833 345566666541 23466677777 77765 444444332 223333445666
Q ss_pred CcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEE
Q 025650 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMI 135 (250)
Q Consensus 101 ~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI 135 (250)
.++.|.++-+|+|.|.-. +-..+.++|+-
T Consensus 96 ~~~~I~fi~Dg~geFTk~------~Gm~~d~~~~g 124 (165)
T COG0678 96 GEGNIKFIPDGNGEFTKA------MGMLVDKSDLG 124 (165)
T ss_pred CCccEEEecCCCchhhhh------cCceeecccCC
Confidence 677999999999999654 22556666664
No 109
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=32.50 E-value=28 Score=29.25 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=34.1
Q ss_pred cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccc
Q 025650 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFT 146 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~ 146 (250)
.+|-+.|-+++|...|+=.++.|--..+.|+|.|.|=.-+.|.+.
T Consensus 71 ~~d~Y~F~D~TG~I~VeId~~~w~G~~v~p~d~V~I~GeVDk~~~ 115 (126)
T TIGR00156 71 GDDRYVFRDKSGEINVVIPAAVWNGREVQPKDMVNISGSLDKKSA 115 (126)
T ss_pred CCceEEEECCCCCEEEEECHHHcCCCcCCCCCEEEEEEEECCCCC
Confidence 567788888888888874445577778888888888777777654
No 110
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=31.70 E-value=1.8e+02 Score=24.87 Aligned_cols=36 Identities=8% Similarity=-0.039 Sum_probs=26.4
Q ss_pred cceEEEEEeceEEEEEEeCCCe-EEEEEEecCCEEEe
Q 025650 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVL 137 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d~-wirI~~e~GDLI~V 137 (250)
.+.+++|++|.......+.+|+ .+--.+.+||++-.
T Consensus 55 ~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 55 LKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred cceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 4779999999998777665554 34445589999854
No 111
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=31.03 E-value=2.3e+02 Score=23.88 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=30.3
Q ss_pred cceEEEEEeceEEEEEEeCC------------------CeEEEEEEecCCEEEeCCCCccccc
Q 025650 102 DEEIRYCVAGSGYFDVRDRN------------------EKWIRIWVKKGGMIVLPAGCYHRFT 146 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~------------------d~wirI~~e~GDLI~VPAG~~HrF~ 146 (250)
.-.|-|+++|+=.+.+...+ +..-.+.+++|++++..++=.|+..
T Consensus 65 YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 65 YFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred EEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 46788888888777664321 1112577788888888888888876
No 112
>PLN02868 acyl-CoA thioesterase family protein
Probab=30.77 E-value=1.7e+02 Score=28.05 Aligned_cols=36 Identities=8% Similarity=0.072 Sum_probs=26.9
Q ss_pred cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEe
Q 025650 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVL 137 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~V 137 (250)
-+.+++|++|+......+.+++.+--.+++||++-.
T Consensus 49 ~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 49 GDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred CceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 368999999999877765555544445689999864
No 113
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=29.89 E-value=1.1e+02 Score=24.94 Aligned_cols=35 Identities=6% Similarity=0.060 Sum_probs=26.3
Q ss_pred ceEEEEEeceEEEEEEeCCCeE-EEEEEecCCEEEe
Q 025650 103 EEIRYCVAGSGYFDVRDRNEKW-IRIWVKKGGMIVL 137 (250)
Q Consensus 103 dEIr~IleGsG~Fdvrd~~d~w-irI~~e~GDLI~V 137 (250)
+-+++|++|.......+.+|+. +--.+.+||++-.
T Consensus 12 ~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 12 EKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 6799999999988876666553 3345799998743
No 114
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=29.79 E-value=1.2e+02 Score=27.65 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=44.5
Q ss_pred ccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEeeecCCCccceee
Q 025650 99 LHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFGLHSTVPMIIYP 170 (250)
Q Consensus 99 ~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF~~~~~P~GWv~ 170 (250)
.|.-|.-+.||.|+..=... ++.-.....|||....|.|...-..+.++.++. -+ ..||+|
T Consensus 116 rh~ad~y~tIL~G~~~~~~~---g~~~~evy~pGd~~~l~rg~a~~y~m~~~tw~L---EY-----~RG~IP 176 (216)
T PF04622_consen 116 RHWADDYFTILSGEQWAWSP---GSLEPEVYKPGDSHHLPRGEAKQYQMPPGTWAL---EY-----GRGWIP 176 (216)
T ss_pred ceEeeeEEEEEEEEEEEEcC---CCCCceEeccCCEEEecCceEEEEEeCCCeEEE---Ee-----cCCchh
Confidence 35568999999999754443 333356788999999999998888888775444 33 456887
No 115
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.86 E-value=1.1e+02 Score=24.65 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=32.1
Q ss_pred cceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccc
Q 025650 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHR 144 (250)
Q Consensus 102 ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~Hr 144 (250)
..|+.-++.|+..+-+. ..+.| ....+|....||++-.--
T Consensus 41 ~~E~Mtvv~Gal~v~lp-gs~dW--q~~~~Ge~F~VpgnS~F~ 80 (94)
T COG3123 41 APEEMTVVSGALTVLLP-GSDDW--QVYTAGEVFNVPGNSEFD 80 (94)
T ss_pred CceEEEEEeeEEEEEcC-CCccc--EEecCCceEEcCCCCeEE
Confidence 46778889999998876 45678 578999999999986643
No 116
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=28.62 E-value=1.2e+02 Score=24.42 Aligned_cols=39 Identities=10% Similarity=0.085 Sum_probs=30.1
Q ss_pred ceEEEEEeceEEEEEEeCCCeEEEE-EEecCCEEEeCCCC
Q 025650 103 EEIRYCVAGSGYFDVRDRNEKWIRI-WVKKGGMIVLPAGC 141 (250)
Q Consensus 103 dEIr~IleGsG~Fdvrd~~d~wirI-~~e~GDLI~VPAG~ 141 (250)
+-+++|++|.........+++..-+ .+.+||++-..+-.
T Consensus 42 ~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~ 81 (214)
T COG0664 42 DSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALL 81 (214)
T ss_pred ceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHh
Confidence 4599999999998888776664444 48899999777544
No 117
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=25.66 E-value=1.1e+02 Score=28.05 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=42.3
Q ss_pred cccccccCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEee
Q 025650 94 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFG 159 (250)
Q Consensus 94 F~~EH~H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF 159 (250)
-|..|+|-.-|--.|++|. |+- .++ ....||++.-+.++.|-....++....++--.
T Consensus 140 s~P~HtH~G~E~t~vl~G~--~sd--e~G-----~y~vgD~~~~d~~v~H~piv~~~~eClcl~al 196 (216)
T COG3806 140 SFPDHTHVGIERTAVLEGA--FSD--ENG-----EYLVGDFTLADGTVQHSPIVLPPGECLCLAAL 196 (216)
T ss_pred ccccccccceEEEEEEeec--ccc--CCC-----ccccCceeecCCccccccccCCCCCceEEEEc
Confidence 4679999999998888776 443 344 36789999999999999766555555555443
No 118
>TIGR01450 recC exodeoxyribonuclease V, gamma subunit. This model describes the gamma subunit of exodeoxyribonuclease V. Species containing this protein should also have the alpha (TIGR01447) and beta (TIGR00609) subunits. Candidates from Borrelia and from the Chlamydias differ dramatically and score between trusted and noise cutoffs.
Probab=25.48 E-value=68 Score=35.15 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=41.2
Q ss_pred HHHHHHhcCCCeeeEEEECCCCCCChHHHHhccccccccCcceEEEEEeceEE
Q 025650 62 LKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGY 114 (250)
Q Consensus 62 l~~L~~erGY~~~Dvi~l~p~~~Pn~e~kl~~F~~EH~H~ddEIr~IleGsG~ 114 (250)
++.+.+..||+.+|++++.|+ +..|...++.-|..+.|+...|-|.++....
T Consensus 373 l~ll~~d~~lrprDI~Vm~pd-ie~Y~p~I~aVF~~~~~~~~~IP~~i~d~~~ 424 (1067)
T TIGR01450 373 LALLEEDPTLQPRDIIVMVPD-IDSYAPYIEAVFGQAPVDARFLPYSLSDRRL 424 (1067)
T ss_pred HHHHhhCCCCCccceEEECCC-hHHhhhHHHHHcCCCCCCCCcCCeEecCCcc
Confidence 445555599999999999998 6889999999999988776567776665543
No 119
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=24.47 E-value=1.6e+02 Score=25.57 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=33.7
Q ss_pred cCcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCccccccCCCCcEEEEEeeecCCCccceee
Q 025650 100 HTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKVIPFGLHSTVPMIIYP 170 (250)
Q Consensus 100 H~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF~l~~~~~vkA~RlF~~~~~P~GWv~ 170 (250)
..++..++|+..+....---...+.+|.....|-+++-|-+ .+..+...+. ..+|+||+|
T Consensus 118 ~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~---------~~~t~vt~~~--~~Dp~G~IP 177 (222)
T cd08871 118 LEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTG---------PKGCTLTYVT--QNDPKGSLP 177 (222)
T ss_pred EeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECC---------CCCEEEEEEE--ecCCCCCcC
Confidence 33334445554444322111235677888777778877765 1223333344 489999998
No 120
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=23.48 E-value=1.3e+02 Score=22.88 Aligned_cols=12 Identities=25% Similarity=1.193 Sum_probs=7.8
Q ss_pred EEEEecCCEEEe
Q 025650 126 RIWVKKGGMIVL 137 (250)
Q Consensus 126 rI~~e~GDLI~V 137 (250)
+|.+.+||++.|
T Consensus 36 ~iwI~~GD~V~V 47 (77)
T cd05793 36 RVWINEGDIVLV 47 (77)
T ss_pred cEEEcCCCEEEE
Confidence 356667777666
No 121
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=22.51 E-value=1.3e+02 Score=23.13 Aligned_cols=28 Identities=21% Similarity=0.667 Sum_probs=15.9
Q ss_pred eceEEEEEEeCCCeEE----------EEEEecCCEEEe
Q 025650 110 AGSGYFDVRDRNEKWI----------RIWVKKGGMIVL 137 (250)
Q Consensus 110 eGsG~Fdvrd~~d~wi----------rI~~e~GDLI~V 137 (250)
-|++.|.|...|+..+ +|.+.+||+++|
T Consensus 15 lG~~~~~V~~~dG~~~la~ipgK~Rk~iwI~~GD~VlV 52 (83)
T smart00652 15 LGNGRLEVMCADGKERLARIPGKMRKKVWIRRGDIVLV 52 (83)
T ss_pred cCCCEEEEEECCCCEEEEEEchhhcccEEEcCCCEEEE
Confidence 3566666665444321 355666777666
No 122
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=22.07 E-value=4.6e+02 Score=21.72 Aligned_cols=54 Identities=9% Similarity=0.070 Sum_probs=40.1
Q ss_pred CcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCCCcccc---ccCCCCcEEEEEee
Q 025650 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRF---TLDTDNYIKVIPFG 159 (250)
Q Consensus 101 ~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF---~l~~~~~vkA~RlF 159 (250)
-+-=+.+|+.|+=.-.+. ++ .....+|+++++|.+++=-. .++++.-+.++++.
T Consensus 22 y~p~i~~vlQG~K~~~~g---~~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l~ 78 (155)
T PF06719_consen 22 YEPSICIVLQGSKRVHLG---DQ--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSLE 78 (155)
T ss_pred cCCeEEEEEeeeEEEEEC---Cc--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEEE
Confidence 356688999999877664 33 36799999999999976543 45566667788887
No 123
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=21.93 E-value=91 Score=26.52 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=17.9
Q ss_pred CcceEEEEEeceEEEEEEeCCCeEEEEEEecCCEEE
Q 025650 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIV 136 (250)
Q Consensus 101 ~ddEIr~IleGsG~Fdvrd~~d~wirI~~e~GDLI~ 136 (250)
-.++.+.|-+|+|...|.=.+..|--.++.|-|.|.
T Consensus 70 i~~D~y~FrD~sGeI~VeIdd~~w~g~tv~P~dkV~ 105 (128)
T COG3111 70 IGDDRYVFRDASGEINVDIDDKVWNGQTVTPKDKVR 105 (128)
T ss_pred eCCceEEEEcCCccEEEEecccccCCcccCcccEEE
Confidence 345555556666655554222334444555555544
No 124
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=21.92 E-value=84 Score=25.02 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=20.3
Q ss_pred ceEEEEEEeCCCeEEEEEEecCCEEEeCCCCcccc
Q 025650 111 GSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRF 145 (250)
Q Consensus 111 GsG~Fdvrd~~d~wirI~~e~GDLI~VPAG~~HrF 145 (250)
|.|+|.+. +.++ .||+++.|.++.+|-
T Consensus 6 ~~g~~~i~---g~~y-----~~~viv~p~~~~~w~ 32 (109)
T cd00248 6 GPGGFRIA---GQVY-----RGPLLVLPDGVVPWD 32 (109)
T ss_pred cCCEEEEC---CEEE-----eeCEEEeCCceeecC
Confidence 55667664 5444 599999999999993
No 125
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=21.81 E-value=46 Score=26.81 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCEEEeCCCCcccccc
Q 025650 122 EKWIRIWVKKGGMIVLPAGCYHRFTL 147 (250)
Q Consensus 122 d~wirI~~e~GDLI~VPAG~~HrF~l 147 (250)
..++.+.+++||+|+.-.-+.|+-..
T Consensus 177 ~~~~~~~~~~Gdvl~~~~~~~H~s~~ 202 (211)
T PF05721_consen 177 DEWVPVPMKAGDVLFFHSRLIHGSGP 202 (211)
T ss_dssp SGCEEE-BSTTEEEEEETTSEEEEE-
T ss_pred CceEEeecCCCeEEEEcCCccccCCC
Confidence 45688999999999999999998664
No 126
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=21.43 E-value=48 Score=31.13 Aligned_cols=16 Identities=38% Similarity=0.737 Sum_probs=14.6
Q ss_pred EEecCCEEEeCCCCcc
Q 025650 128 WVKKGGMIVLPAGCYH 143 (250)
Q Consensus 128 ~~e~GDLI~VPAG~~H 143 (250)
..++||.|.||+|+|+
T Consensus 7 ~A~~GDtI~l~~G~Y~ 22 (314)
T TIGR03805 7 AAQPGDTIVLPEGVFQ 22 (314)
T ss_pred hCCCCCEEEECCCEEE
Confidence 4689999999999998
No 127
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=20.69 E-value=2.4e+02 Score=19.47 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=28.9
Q ss_pred hHHhhcCeEEEEeCCCCcCChHHHHHHHHhcCCC-eeeEEEECCCCCCChHHH
Q 025650 39 DQLSELGVLSWRLDADNYETDEELKKIREDRGYS-YMDFCEVCPEKLPNYEEK 90 (250)
Q Consensus 39 ~~L~~lGV~~~~~~~~~~e~~~~l~~L~~erGY~-~~Dvi~l~p~~~Pn~e~k 90 (250)
+.|++.||.|-.++.+.. .+..+++.+..|.. +.=+|.+..+.+..+++.
T Consensus 18 ~~L~~~~i~~~~i~i~~~--~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~ 68 (75)
T cd03418 18 ALLDKKGVDYEEIDVDGD--PALREEMINRSGGRRTVPQIFIGDVHIGGCDDL 68 (75)
T ss_pred HHHHHCCCcEEEEECCCC--HHHHHHHHHHhCCCCccCEEEECCEEEeChHHH
Confidence 567788888877766532 45566676666654 444555554433344433
No 128
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=20.67 E-value=1.2e+02 Score=26.17 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=26.2
Q ss_pred EEEeceEEEEEEeCCCeEEEEEEecCCEEEeCCC
Q 025650 107 YCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAG 140 (250)
Q Consensus 107 ~IleGsG~Fdvrd~~d~wirI~~e~GDLI~VPAG 140 (250)
.-+.|+|...+.. .+..+++.+.+|+-++|.++
T Consensus 134 ~~l~G~G~v~l~~-~G~i~~i~L~~ge~~~Vd~~ 166 (215)
T PF01987_consen 134 LKLSGRGTVFLSG-YGAIYEIDLAPGEEIIVDPG 166 (215)
T ss_dssp EEEESSCEEEEEE-CCSEEEEEEE-EEEEEEEGG
T ss_pred EEEEEEEEEEEEe-CCcEEEEEccCCceEEEcCC
Confidence 4588999998884 67788999999999888765
No 129
>PRK15372 pathogenicity island 2 effector protein SseI; Provisional
Probab=20.34 E-value=2.3e+02 Score=27.01 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=48.6
Q ss_pred ceEEEEEeceEEEEEEeCCCe-EEEEEEe-cCCE-EEeCCC-CccccccCCCCcEEEEEeeecCCCccceeecCCCCcch
Q 025650 103 EEIRYCVAGSGYFDVRDRNEK-WIRIWVK-KGGM-IVLPAG-CYHRFTLDTDNYIKVIPFGLHSTVPMIIYPQGRDMFKI 178 (250)
Q Consensus 103 dEIr~IleGsG~Fdvrd~~d~-wirI~~e-~GDL-I~VPAG-~~HrF~l~~~~~vkA~RlF~~~~~P~GWv~~~R~~D~~ 178 (250)
|.|....+|.-+|-+.|.+++ .+.|.+. +|-+ +..|.| +.|.+++...+.+. .. ..++|-+.|-
T Consensus 55 enI~~~r~g~n~fcI~den~qEILSvt~dda~~YTV~c~g~~~t~~~~~~~~~~v~----------~~-~~~~nlt~di- 122 (292)
T PRK15372 55 ENIHSGLHGENYFCILDEDSQEILSVTLDDVGNYTVNCQGYSETHHLTMATEPGVE----------RT-DITYNLTSDI- 122 (292)
T ss_pred hhhhcccCCCceEEEEcCCCceeEEEEEcCCCceEEEeCCcceEEEeeccCCCcch----------hc-cCccccccCC-
Confidence 444557788888888887765 6667777 5545 444444 67888877765443 11 4566776663
Q ss_pred HHHHHHHHHHHHH
Q 025650 179 SCRRKLVTALSML 191 (250)
Q Consensus 179 ~~R~~yl~~l~~~ 191 (250)
++ .+||..|+..
T Consensus 123 ~a-~~yl~el~~~ 134 (292)
T PRK15372 123 DA-AAYLEELKQN 134 (292)
T ss_pred CH-HHHHHHhhcC
Confidence 33 4699988763
No 130
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=20.06 E-value=3.6e+02 Score=19.69 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=35.5
Q ss_pred EEEeceEEEEEEeCCCe-EEEEEEecCCEEEeCCCCccccccCCCCcE
Q 025650 107 YCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLPAGCYHRFTLDTDNYI 153 (250)
Q Consensus 107 ~IleGsG~Fdvrd~~d~-wirI~~e~GDLI~VPAG~~HrF~l~~~~~v 153 (250)
+-..|.+.+.|.|.+++ .+.-.+++||-..++++-.=...++...-+
T Consensus 3 l~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i~iGna~~v 50 (77)
T PF13464_consen 3 LTATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFRIRIGNAGAV 50 (77)
T ss_pred EEEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEEEEeCCCcE
Confidence 44568889999977764 667788999999888777777777765544
No 131
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=20.01 E-value=2.3e+02 Score=21.82 Aligned_cols=52 Identities=15% Similarity=0.046 Sum_probs=33.1
Q ss_pred hHHhhcCeEEEEeCCCCcCChHHHHHHHHhcCCCeeeEEEECCCCCCChHHHHh
Q 025650 39 DQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIK 92 (250)
Q Consensus 39 ~~L~~lGV~~~~~~~~~~e~~~~l~~L~~erGY~~~Dvi~l~p~~~Pn~e~kl~ 92 (250)
+-|+++||.|..++... .....+.+++-.|..+.=.|-+.......+++..+
T Consensus 35 ~lL~~~~i~~~~~di~~--~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~ 86 (97)
T TIGR00365 35 QILKACGVPFAYVNVLE--DPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIME 86 (97)
T ss_pred HHHHHcCCCEEEEECCC--CHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHH
Confidence 56678888887777642 23445566666677666666666655555555554
Done!