BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025651
(250 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5L5E7|AAXB_CHLAB Pyruvoyl-dependent arginine decarboxylase AaxB OS=Chlamydophila
abortus (strain S26/3) GN=aaxB PE=3 SV=1
Length = 195
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 1 MELRGSHNVRGTHAATTGGGREDCWSEGATGTLIEAWGDRYVRL 44
M RG+ V GTHA TTG G CW + G LI W YV
Sbjct: 83 MAGRGASTVEGTHAITTGVGI--CWGQDKNGELIGGWAAEYVEF 124
>sp|Q255I0|AAXB_CHLFF Pyruvoyl-dependent arginine decarboxylase AaxB OS=Chlamydophila
felis (strain Fe/C-56) GN=aaxB PE=3 SV=1
Length = 195
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 1 MELRGSHNVRGTHAATTGGGREDCWSEGATGTLIEAWGDRYVRL 44
M RG+ V GTHA TG G CW + G LI W YV
Sbjct: 83 MAGRGAATVDGTHAIATGVGI--CWGQDKNGELIGGWAAEYVEF 124
>sp|P17040|ZSC20_HUMAN Zinc finger and SCAN domain-containing protein 20 OS=Homo sapiens
GN=ZSCAN20 PE=2 SV=3
Length = 1043
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 43 RLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKPPPSKWPF 102
+L H ++ ++ +AE + +R G +T QC+ R+ L + Y+ K+ PP PF
Sbjct: 346 KLRTCHQNRQVYRAIAEQLRAR--GFL--RTLEQCRYRVKNLLRNYRKAKSSHPPGTCPF 401
Query: 103 YYRLDSLI 110
Y L++L+
Sbjct: 402 YEELEALV 409
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 72 KTDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLI 110
+T QC+ R L + Y+ K+ PP PFY LDSL+
Sbjct: 531 RTLEQCRYRFKNLLRSYRKAKSSHPPGTCPFYEELDSLM 569
>sp|B2KFW1|ZSC20_MOUSE Zinc finger and SCAN domain-containing protein 20 OS=Mus musculus
GN=Zscan20 PE=2 SV=2
Length = 1030
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 43 RLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKPPPSKWPF 102
+L H ++ ++ +AE + +R G +T QC+ R+ L + Y+ K PP PF
Sbjct: 338 KLQTCHQNRQVYRAIAERLRAR--GFL--RTLEQCRYRVKNLLRNYRKAKNSHPPGTCPF 393
Query: 103 YYRLDSLI 110
Y L++L+
Sbjct: 394 YEELEALV 401
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 72 KTDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLI 110
+T QC+ R L + Y+ K+ PP PFY +DSL+
Sbjct: 524 RTLEQCRYRFKNLLRSYRKAKSSCPPGTCPFYEEMDSLM 562
>sp|Q8IWY8|ZSC29_HUMAN Zinc finger and SCAN domain-containing protein 29 OS=Homo sapiens
GN=ZSCAN29 PE=1 SV=2
Length = 852
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 25 WSEGATGTL--IEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRID 82
W T TL I + + Y L H + + VAE + RE G +T QC+ +
Sbjct: 248 WGYEETRTLLAILSQTEFYEALRNCHRNSQVYGAVAERL--REYGFL--RTLEQCRTKFK 303
Query: 83 TLKKKYKIEKAKPPPSKWPFYYRLDSLIGNDAVS 116
L+K Y+ K+ PP PF+ +++L+ ++
Sbjct: 304 GLQKSYRKVKSGHPPETCPFFEEMEALMSAQVIA 337
>sp|Q822F3|AAXB_CHLCV Pyruvoyl-dependent arginine decarboxylase AaxB OS=Chlamydophila
caviae (strain GPIC) GN=aaxB PE=3 SV=1
Length = 195
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 1 MELRGSHNVRGTHAATTGGGREDCWSEGATGTLIEAWGDRYVRL 44
M RG+ GTHA TG G CW + G LI W YV
Sbjct: 83 MAGRGASTSDGTHAIATGVGI--CWGQDKNGELIGGWAAEYVEF 124
>sp|Q9Z6M7|AAXB_CHLPN Pyruvoyl-dependent arginine decarboxylase AaxB OS=Chlamydia
pneumoniae GN=aaxB PE=1 SV=1
Length = 195
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 1 MELRGSHNVRGTHAATTGGGREDCWSEGATGTLIEAWGDRYVRL 44
M RG+ GTHA TG G CW + G LI W YV
Sbjct: 83 MAGRGAALSDGTHAIATGIGI--CWGKDKNGELIGGWAAEYVEF 124
>sp|Q9C0D2|K1731_HUMAN Centrosomal protein KIAA1731 OS=Homo sapiens GN=KIAA1731 PE=2 SV=4
Length = 2601
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 72/137 (52%), Gaps = 11/137 (8%)
Query: 115 VSSKKPANITLRVKSKPRTSFVGRSVSTENDNLSSDGEADDDGDDDEIVVKKVHRMEDVD 174
+ SK P + + SK RT G+ E+D L+ E+ +D+ + + ++ +
Sbjct: 420 IESKAPTVESGTIASKERTLSSGQEQVVESDTLT--IESGPLASEDKPLSCGTNSGKEQE 477
Query: 175 LSDGAACRELARA--ILKFGEIYERIE-SAKQKQMMELEKER---LEFIKDVECERMNM- 227
+++ +A++ +L E RI SA+QKQ+ME+E+++ LE ++ +E +++ +
Sbjct: 478 INETLPITTVAQSSVLLHPQEAAARIRMSARQKQIMEIEEQKQKQLELLEQIEQQKLRLE 537
Query: 228 --FMGAQLEIQKSKRKQ 242
AQLE +K K+ Q
Sbjct: 538 TDCFRAQLEEEKRKKTQ 554
>sp|P0C8H9|RIR1_ASFWA Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-055 PE=3 SV=1
Length = 778
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 4 RGSHNVRGTHAATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEV 57
+GSH AA+ G + D W G LI +W +R + +G L +K W+++
Sbjct: 544 KGSHPSFPGSAASKGLLQPDLWVR--CGDLIPSWEERVAQTTQGVLTRKSWRQL 595
>sp|P0C8H8|RIR1_ASFP4 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Tick/South Africa/Pretoriuskop
Pr4/1996) GN=Pret-057 PE=3 SV=1
Length = 778
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 4 RGSHNVRGTHAATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEV 57
+GSH AA+ G + D W G LI +W +R + +G L +K W+++
Sbjct: 544 KGSHPSFPGSAASKGLLQPDLWVR--CGDLIPSWEERVAQTTQGVLTRKSWRQL 595
>sp|Q6WIH2|MEP2_ARTBE Extracellular metalloproteinase 2 OS=Arthroderma benhamiae GN=MEP2
PE=3 SV=1
Length = 632
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 18 GGGREDCWSEGATGTLIEAWGDRY---VRLNRGHLRQKDWKEVAESVNSRENGVK--PKK 72
G +C SE G + E WGD Y +RL + R+ D+ + E + E G++ P
Sbjct: 442 GPANSNCLSELEAGGMGEGWGDFYATAIRLKQDDTRETDYT-MGEWAANMEGGIREYPYS 500
Query: 73 TDIQCK 78
T++Q
Sbjct: 501 TNMQTN 506
>sp|B6V873|MEP2_TRITO Extracellular metalloproteinase 2 OS=Trichophyton tonsurans GN=MEP2
PE=3 SV=1
Length = 632
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 18 GGGREDCWSEGATGTLIEAWGDRY---VRLNRGHLRQKDWKEVAESVNSRENGVK--PKK 72
G +C SE G + E WGD Y +RL + R+ D+ + E + E G++ P
Sbjct: 442 GPANSNCLSELEAGGMGEGWGDFYATAIRLKQDDTRETDYT-MGEWAANMEGGIREYPYS 500
Query: 73 TDIQCK 78
T++Q
Sbjct: 501 TNMQTN 506
>sp|O84378|AAXB_CHLTR Pyruvoyl-dependent arginine decarboxylase AaxB OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=aaxB PE=3 SV=1
Length = 195
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 1 MELRGSHNVRGTHAATTGGGREDCWSEGATGTLIEAWGDRYVRL 44
M RG+ GT A TG G CW + G LI W YV
Sbjct: 83 MAGRGATVTDGTQAIATGVGI--CWGKDKNGELIRGWAAEYVEF 124
>sp|Q3KLY3|AAXB_CHLTA Pyruvoyl-dependent arginine decarboxylase AaxB OS=Chlamydia
trachomatis serovar A (strain HAR-13 / ATCC VR-571B)
GN=aaxB PE=3 SV=1
Length = 195
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 1 MELRGSHNVRGTHAATTGGGREDCWSEGATGTLIEAWGDRYVRL 44
M RG+ GT A TG G CW + G LI W YV
Sbjct: 83 MAGRGATVTDGTQAIATGVGI--CWGKDKNGELIRGWAVEYVEF 124
>sp|Q32LK9|SYCE1_BOVIN Synaptonemal complex central element protein 1 OS=Bos taurus
GN=SYCE1 PE=2 SV=2
Length = 323
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 64 RENGVKPKKTDIQ-CKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLIGN--DAVSSKKP 120
+EN + K+T +Q CK RI L + + EK K + F +L+ L+G D KP
Sbjct: 118 KENEAQRKQTMLQECKERISALNSQIEQEKNKQRQLRLDFEEQLEDLMGQYKDLWEFHKP 177
Query: 121 ANITLRVKS 129
+ L + +
Sbjct: 178 ERLALEIST 186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,767,944
Number of Sequences: 539616
Number of extensions: 4010456
Number of successful extensions: 14722
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 14526
Number of HSP's gapped (non-prelim): 227
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)