Query 025651
Match_columns 250
No_of_seqs 175 out of 254
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:04:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4282 Transcription factor G 100.0 1.1E-31 2.4E-36 249.2 22.6 216 22-241 54-318 (345)
2 PF13837 Myb_DNA-bind_4: Myb/S 99.8 1.4E-20 3.1E-25 142.2 7.3 83 23-109 2-90 (90)
3 PF12776 Myb_DNA-bind_3: Myb/S 98.6 1.7E-07 3.8E-12 71.5 7.6 69 24-95 1-72 (96)
4 smart00595 MADF subfamily of S 98.5 1E-07 2.2E-12 72.1 4.3 69 33-110 2-85 (89)
5 PF13873 Myb_DNA-bind_5: Myb/S 98.2 6.2E-06 1.4E-10 61.3 7.6 70 21-93 1-77 (78)
6 PF10545 MADF_DNA_bdg: Alcohol 98.1 1.6E-06 3.5E-11 63.8 1.6 70 33-109 1-85 (85)
7 PF00249 Myb_DNA-binding: Myb- 97.9 3.4E-05 7.3E-10 52.8 5.0 47 23-85 2-48 (48)
8 smart00717 SANT SANT SWI3, AD 97.3 0.0004 8.7E-09 45.3 4.4 47 23-86 2-48 (49)
9 PF13921 Myb_DNA-bind_6: Myb-l 97.3 0.00039 8.5E-09 49.1 4.6 43 25-85 1-44 (60)
10 cd00167 SANT 'SWI3, ADA2, N-Co 97.2 0.0009 2E-08 43.0 4.6 45 24-85 1-45 (45)
11 PLN03212 Transcription repress 95.5 0.034 7.3E-07 51.2 6.1 54 19-90 75-128 (249)
12 PLN03091 hypothetical protein; 95.5 0.039 8.5E-07 54.4 6.9 54 19-90 64-117 (459)
13 PF04504 DUF573: Protein of un 95.1 0.11 2.5E-06 41.0 7.4 67 23-94 5-71 (98)
14 PLN03212 Transcription repress 94.0 0.11 2.5E-06 47.7 5.7 50 19-84 22-71 (249)
15 PLN03091 hypothetical protein; 90.7 0.34 7.4E-06 48.0 4.5 49 19-83 11-59 (459)
16 KOG1279 Chromatin remodeling f 90.1 0.38 8.3E-06 48.4 4.4 49 18-84 249-297 (506)
17 COG5259 RSC8 RSC chromatin rem 89.6 0.52 1.1E-05 47.1 4.9 46 21-84 278-323 (531)
18 PRK13923 putative spore coat p 83.6 3 6.5E-05 36.5 5.8 58 20-90 3-62 (170)
19 KOG0051 RNA polymerase I termi 81.4 2.5 5.5E-05 43.5 5.2 67 20-94 434-516 (607)
20 TIGR02894 DNA_bind_RsfA transc 81.0 4.2 9E-05 35.4 5.6 60 20-91 2-62 (161)
21 PF03353 Lin-8: Ras-mediated v 78.8 4.9 0.00011 37.4 5.9 80 24-106 19-112 (313)
22 KOG0457 Histone acetyltransfer 76.0 4.3 9.4E-05 40.2 4.8 43 20-79 70-112 (438)
23 KOG4348 Adaptor protein CMS/SE 73.1 15 0.00033 37.0 7.8 55 179-241 569-623 (627)
24 KOG0049 Transcription factor, 71.7 6.5 0.00014 41.3 5.0 55 18-88 249-303 (939)
25 TIGR01557 myb_SHAQKYF myb-like 70.3 15 0.00033 26.4 5.3 48 21-83 2-52 (57)
26 KOG0048 Transcription factor, 69.9 15 0.00033 32.9 6.6 56 19-92 59-115 (238)
27 PF15444 TMEM247: Transmembran 62.5 11 0.00024 33.8 4.0 14 204-217 101-114 (218)
28 PF13404 HTH_AsnC-type: AsnC-t 43.3 39 0.00085 22.6 3.4 24 53-85 19-42 (42)
29 PF04568 IATP: Mitochondrial A 37.4 1.8E+02 0.0039 23.4 6.9 26 202-227 67-92 (100)
30 PF06576 DUF1133: Protein of u 36.5 37 0.00081 30.0 3.1 27 55-85 134-160 (176)
31 COG1422 Predicted membrane pro 35.6 2.7E+02 0.0059 25.2 8.5 52 185-238 61-120 (201)
32 KOG4661 Hsp27-ERE-TATA-binding 34.5 89 0.0019 32.8 5.8 21 209-230 665-685 (940)
33 KOG0048 Transcription factor, 33.8 40 0.00086 30.3 3.0 45 23-83 10-54 (238)
34 PF12037 DUF3523: Domain of un 30.8 2.6E+02 0.0056 26.4 7.8 49 186-234 133-182 (276)
35 KOG0049 Transcription factor, 30.7 94 0.002 33.1 5.3 50 18-84 356-405 (939)
36 PF13767 DUF4168: Domain of un 30.4 2.3E+02 0.0049 21.0 6.4 46 187-238 5-50 (78)
37 PF07227 DUF1423: Protein of u 30.0 2.4E+02 0.0052 28.4 7.8 52 180-234 368-424 (446)
38 PF05278 PEARLI-4: Arabidopsis 28.1 3.1E+02 0.0067 25.9 7.8 21 191-211 175-195 (269)
39 KOG0050 mRNA splicing protein 27.6 53 0.0012 33.8 2.9 23 52-82 28-50 (617)
40 PF09420 Nop16: Ribosome bioge 27.4 80 0.0017 26.8 3.6 16 70-85 148-163 (164)
41 PRK13271 treA trehalase; Provi 27.1 53 0.0011 33.8 2.9 22 19-40 518-539 (569)
42 smart00586 ZnF_DBF Zinc finger 24.4 33 0.00071 24.3 0.6 37 75-111 9-45 (49)
43 KOG2264 Exostosin EXT1L [Signa 24.2 3.5E+02 0.0077 28.6 8.0 57 179-240 79-135 (907)
44 PF15419 LNP1: Leukemia NUP98 23.0 88 0.0019 27.7 3.1 13 185-197 107-119 (177)
45 KOG2303 Predicted NAD synthase 22.6 46 0.001 34.3 1.4 50 56-111 631-692 (706)
46 PF04231 Endonuclease_1: Endon 21.9 2.3E+02 0.0049 25.6 5.6 51 182-232 157-207 (218)
47 PF01388 ARID: ARID/BRIGHT DNA 21.5 1.3E+02 0.0029 22.4 3.5 30 51-90 57-86 (92)
48 PRK08476 F0F1 ATP synthase sub 20.6 4.9E+02 0.011 21.4 8.0 46 195-240 87-132 (141)
49 COG3750 Uncharacterized protei 20.1 2.1E+02 0.0046 22.4 4.3 29 182-210 10-38 (85)
No 1
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=100.00 E-value=1.1e-31 Score=249.21 Aligned_cols=216 Identities=33% Similarity=0.442 Sum_probs=150.2
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC----CC
Q 025651 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP----PP 97 (250)
Q Consensus 22 ~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~~~----~~ 97 (250)
.++|+.+||++||++|+++|..|++++++.++|++||.++... +++||+.||++||++|+++||++|.+. ..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~----g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~ 129 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAEL----GYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEG 129 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 7999999999999999999999999999999999999988764 488999999999999999999999986 47
Q ss_pred CCCcchHHHHHhhC-CCCCC---------CCCCCcccccc----cCCCCCC-----------CC-CCC--------CCCC
Q 025651 98 SKWPFYYRLDSLIG-NDAVS---------SKKPANITLRV----KSKPRTS-----------FV-GRS--------VSTE 143 (250)
Q Consensus 98 s~W~fFd~LD~Llg-~~~~~---------~~~p~~~~~~~----~~~p~~~-----------~~-~~~--------~~~~ 143 (250)
+.|+||+.||.++. ..++. ...|.++.... ..+|... .+ .++ ....
T Consensus 130 s~~~ff~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 209 (345)
T KOG4282|consen 130 SSWKFFSELEALLITFKARPRSDEVGPGNASAPLTLSVSSEPQFSSNPTELQFDGSSLEDSSQPSGLNEDNSNSSSPEPV 209 (345)
T ss_pred ccchHHHHHHHHHhccCCCCCCCCCCcccccCccccCCCCCCCCCCCccccccCCCcCCCCCcccccCccccccCCCCCC
Confidence 89999999999997 22211 01111110000 0000000 00 000 0000
Q ss_pred CCC------CCCCCCCCCCCCCh-hhhhhhhcccccccCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 025651 144 NDN------LSSDGEADDDGDDD-EIVVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIE-SAKQKQMMELEKERLE 215 (250)
Q Consensus 144 ~~~------~~sd~~~~~~~~~~-~~~~~k~~r~~~~~~~~g~~~~~la~ai~~f~e~yer~E-~~K~~~~~elEk~Rme 215 (250)
.+. .+++.++..+...+ .....++.+........+..++++++++.+|+++|+++| ..++++|.++|++||+
T Consensus 210 ~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~e~~r~~ 289 (345)
T KOG4282|consen 210 AGSLSNDTSSSSSPDDSADSEGGKSSSRKRRVRKDGSKEGIEELMREVARSQERLDEVLERVEEKKEQERMSEEEKWRME 289 (345)
T ss_pred CcchhhccccccchhcccccccCCCCCCCccccccccchhHHHHhhhhhhhHHHHHHHHHHHhccchHhhhhHHHHHHHH
Confidence 000 01111111111110 011111111111122345689999999999999999999 9999999999999999
Q ss_pred hh---HHHHHHHHHHHHHHHHHHHHhhhc
Q 025651 216 FI---KDVECERMNMFMGAQLEIQKSKRK 241 (250)
Q Consensus 216 f~---kdlE~~R~~~~~~~Q~ei~~~~~~ 241 (250)
|+ +++|++++++++++|++|+.|+..
T Consensus 290 ~~~r~ke~e~~~~~~~~~~~~~i~~i~~~ 318 (345)
T KOG4282|consen 290 EIERNKELELARQERIQETQLEIRSIKAI 318 (345)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999999988754
No 2
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=99.82 E-value=1.4e-20 Score=142.17 Aligned_cols=83 Identities=35% Similarity=0.719 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHhhHHHh--hhc-CCCChh-hHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC--C
Q 025651 23 DCWSEGATGTLIEAWGDRYVR--LNR-GHLRQK-DWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP--P 96 (250)
Q Consensus 23 ~~WSe~ET~~LLeawger~~q--l~r-g~lR~k-~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~~~--~ 96 (250)
..||++||.+||++|++.+.+ +.. ++.+++ .|++||+.|++++ +.+|+.||++||++|+++|++++.+. .
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G----~~rt~~qc~~Kw~~L~~~Yk~~k~~~~~~ 77 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHG----YNRTPEQCRNKWKNLKKKYKKIKDRNKKS 77 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC--------HHHHHHHHHHHHHHHHCSSSSSS--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 579999999999999996544 443 577776 8999999999862 67999999999999999999999986 4
Q ss_pred CCCCcchHHHHHh
Q 025651 97 PSKWPFYYRLDSL 109 (250)
Q Consensus 97 ~s~W~fFd~LD~L 109 (250)
+++|+||+.||.|
T Consensus 78 ~~~w~~f~~md~i 90 (90)
T PF13837_consen 78 GSSWPYFDEMDEI 90 (90)
T ss_dssp --S---TT-----
T ss_pred CCcCcCHHHHhcC
Confidence 6799999999987
No 3
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=98.60 E-value=1.7e-07 Score=71.48 Aligned_cols=69 Identities=29% Similarity=0.463 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHhhHHHhhh---cCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q 025651 24 CWSEGATGTLIEAWGDRYVRLN---RGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP 95 (250)
Q Consensus 24 ~WSe~ET~~LLeawger~~ql~---rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~~~ 95 (250)
.||+..+..||+++-+.-..-+ .+.++...|..|+.+++++.+ ...|..||+||++.||+.|+..+.-.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~---~~~t~~qlknk~~~lk~~y~~~~~l~ 72 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTG---LNYTKKQLKNKWKTLKKDYRIWKELR 72 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhC---CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999988755543 356777899999999999653 56899999999999999999987643
No 4
>smart00595 MADF subfamily of SANT domain.
Probab=98.52 E-value=1e-07 Score=72.08 Aligned_cols=69 Identities=30% Similarity=0.530 Sum_probs=52.7
Q ss_pred HHHHHhhHHHhh-------hcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC------C--C
Q 025651 33 LIEAWGDRYVRL-------NRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP------P--P 97 (250)
Q Consensus 33 LLeawger~~ql-------~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~~~------~--~ 97 (250)
||+++...-.-. .....+...|.+||..|+. |..+|+.||++|+..|+.+..+. + +
T Consensus 2 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aW~~Ia~~l~~---------~~~~~~~kw~~LR~~y~~e~~r~~~~~~~~~~~ 72 (89)
T smart00595 2 LIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGL---------SVEECKKRWKNLRDRYRRELKRLQNGKSGGGKK 72 (89)
T ss_pred hHHHHHhCccccCCCChhhcChHHHHHHHHHHHHHHCc---------CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 677777643222 2333455679999999953 89999999999999999987542 1 5
Q ss_pred CCCcchHHHHHhh
Q 025651 98 SKWPFYYRLDSLI 110 (250)
Q Consensus 98 s~W~fFd~LD~Ll 110 (250)
+.|.||+.|..|-
T Consensus 73 ~~w~~~~~m~FL~ 85 (89)
T smart00595 73 SKWEYFDRLSFLR 85 (89)
T ss_pred CCchhhHhhhhHH
Confidence 8999999998775
No 5
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=98.22 E-value=6.2e-06 Score=61.25 Aligned_cols=70 Identities=29% Similarity=0.298 Sum_probs=54.8
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhc-CC------CChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhC
Q 025651 21 REDCWSEGATGTLIEAWGDRYVRLNR-GH------LRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKA 93 (250)
Q Consensus 21 r~~~WSe~ET~~LLeawger~~ql~r-g~------lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~ 93 (250)
|...||.+|..+||+....+...+.. .+ .+...|++|+..||+..+ ..||+.||+.++++||..=|+.-.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~---~~Rs~~~lkkkW~nlk~~~Kk~~~ 77 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGP---GKRSWKQLKKKWKNLKSKAKKKLA 77 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999998886555432 11 234579999999999643 279999999999999998877543
No 6
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=98.06 E-value=1.6e-06 Score=63.76 Aligned_cols=70 Identities=27% Similarity=0.486 Sum_probs=51.7
Q ss_pred HHHHHhhHHHhhh-------cCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC--------CC
Q 025651 33 LIEAWGDRYVRLN-------RGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP--------PP 97 (250)
Q Consensus 33 LLeawger~~ql~-------rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~~~--------~~ 97 (250)
||+.|...-.-.+ ...++...|++||..++.. .+..+|+.+|.+|+..|+.++.+. ..
T Consensus 1 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aw~~Ia~~l~~~-------~~~~~~~~~w~~Lr~~y~~~~~~~~~~~~~~~~~ 73 (85)
T PF10545_consen 1 LIELVKKHPCLWDPSHPDYKNRQLREEAWQEIARELGKE-------FSVDDCKKRWKNLRDRYRRELKKIKSSGGSEEYV 73 (85)
T ss_pred CHHHHhhCHHhhCCCCcccCCHHHHHHHHHHHHHHHccc-------hhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 5666666433322 2234566799999999643 468899999999999999988653 37
Q ss_pred CCCcchHHHHHh
Q 025651 98 SKWPFYYRLDSL 109 (250)
Q Consensus 98 s~W~fFd~LD~L 109 (250)
++|.||+.|.-|
T Consensus 74 ~~~~~~~~l~FL 85 (85)
T PF10545_consen 74 PTWSYYEELSFL 85 (85)
T ss_pred CccHHHHHCcCC
Confidence 899999999754
No 7
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.85 E-value=3.4e-05 Score=52.75 Aligned_cols=47 Identities=28% Similarity=0.502 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHH
Q 025651 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (250)
Q Consensus 23 ~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LK 85 (250)
..||.+|...|+++....-. ..|..||..|. ..||..||++++.+|+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~---------~~W~~Ia~~~~-------~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGK---------DNWKKIAKRMP-------GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTT---------THHHHHHHHHS-------SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCC---------cHHHHHHHHcC-------CCCCHHHHHHHHHhhC
Confidence 37999999999998754311 17999999995 1489999999998874
No 8
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.33 E-value=0.0004 Score=45.27 Aligned_cols=47 Identities=28% Similarity=0.499 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHH
Q 025651 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (250)
Q Consensus 23 ~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKK 86 (250)
..||.+|...|+.+....-. .+|..||..|. .||+.||++++.+|.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~---------~~w~~Ia~~~~--------~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK---------NNWEKIAKELP--------GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc---------CCHHHHHHHcC--------CCCHHHHHHHHHHHcC
Confidence 47999999999988664311 47999999994 4899999999988764
No 9
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.32 E-value=0.00039 Score=49.06 Aligned_cols=43 Identities=35% Similarity=0.730 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHH-HH
Q 025651 25 WSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT-LK 85 (250)
Q Consensus 25 WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~-LK 85 (250)
||++|...|+..+... |+ .|..||..|. .||+.||++|+.+ |+
T Consensus 1 WT~eEd~~L~~~~~~~------g~----~W~~Ia~~l~--------~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKY------GN----DWKKIAEHLG--------NRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHH------TS-----HHHHHHHST--------TS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHH------Cc----CHHHHHHHHC--------cCCHHHHHHHHHHHCc
Confidence 9999999999998874 22 6999999984 3899999999998 64
No 10
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.15 E-value=0.0009 Score=43.02 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHH
Q 025651 24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (250)
Q Consensus 24 ~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LK 85 (250)
.||.+|...|+......-. ..|..||..|. .||..||++++.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---------~~w~~Ia~~~~--------~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---------NNWEKIAKELP--------GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---------CCHHHHHhHcC--------CCCHHHHHHHHHHhC
Confidence 4999999999988774421 46999999994 289999999998763
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=95.48 E-value=0.034 Score=51.16 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=41.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI 90 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKk 90 (250)
......||.+|-..||+.+.. + | ..|..||..|. .||+.||||+|.++.++...
T Consensus 75 ~I~kgpWT~EED~lLlel~~~----~--G----nKWs~IAk~Lp--------GRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 75 SVKRGGITSDEEDLILRLHRL----L--G----NRWSLIAGRIP--------GRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred hcccCCCChHHHHHHHHHHHh----c--c----ccHHHHHhhcC--------CCCHHHHHHHHHHHHhHHHH
Confidence 355679999999999987432 2 3 25999999883 38999999999986666433
No 12
>PLN03091 hypothetical protein; Provisional
Probab=95.46 E-value=0.039 Score=54.43 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=43.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI 90 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKk 90 (250)
......||.+|-..||+.+.. + | ..|..||..| +.||+.||||+|..+-++|.+
T Consensus 64 ~IkKgpWT~EED~lLLeL~k~----~--G----nKWskIAk~L--------PGRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 64 DLKRGTFSQQEENLIIELHAV----L--G----NRWSQIAAQL--------PGRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred cccCCCCCHHHHHHHHHHHHH----h--C----cchHHHHHhc--------CCCCHHHHHHHHHHHHHHHHH
Confidence 345678999999999988753 1 3 3699999988 348999999999997777655
No 13
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=95.10 E-value=0.11 Score=41.03 Aligned_cols=67 Identities=22% Similarity=0.238 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q 025651 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAK 94 (250)
Q Consensus 23 ~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~~ 94 (250)
-.||++.-..||+..-+....-+. ....+|..+++.|..... +..|..|-..||..||++|.....+
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~--~p~~d~~~f~~~vk~~l~---~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGK--SPQPDMNAFYDFVKGSLS---FDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCC--CCCccHHHHHHHHHHHcc---CCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 369999999999988776444433 333488888888887643 5578999999999999999997766
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=94.00 E-value=0.11 Score=47.71 Aligned_cols=50 Identities=14% Similarity=0.355 Sum_probs=36.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHH
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~L 84 (250)
+.+...||.+|-..|+.+-... | ...|..||..|. ..||+.|||.||.+.
T Consensus 22 glKRg~WT~EEDe~L~~lV~ky------G---~~nW~~IAk~~g-------~gRT~KQCReRW~N~ 71 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKE------G---EGRWRSLPKRAG-------LLRCGKSCRLRWMNY 71 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHh------C---cccHHHHHHhhh-------cCCCcchHHHHHHHh
Confidence 4666789999999998753321 2 235999998873 348999999999753
No 15
>PLN03091 hypothetical protein; Provisional
Probab=90.67 E-value=0.34 Score=48.02 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=36.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHH
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~ 83 (250)
..+...||.+|-..|+++.... |. ..|..||..+. ..||+.|||.||.+
T Consensus 11 klrKg~WTpEEDe~L~~~V~ky------G~---~nWs~IAk~~g-------~gRT~KQCRERW~N 59 (459)
T PLN03091 11 KLRKGLWSPEEDEKLLRHITKY------GH---GCWSSVPKQAG-------LQRCGKSCRLRWIN 59 (459)
T ss_pred CCcCCCCCHHHHHHHHHHHHHh------Cc---CCHHHHhhhhc-------cCcCcchHhHHHHh
Confidence 3556689999999998776421 21 36999998763 34899999999874
No 16
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=90.09 E-value=0.38 Score=48.39 Aligned_cols=49 Identities=33% Similarity=0.491 Sum_probs=38.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHH
Q 025651 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (250)
Q Consensus 18 ~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~L 84 (250)
+..-+..||+.||++||++-.- ...+|..||..|. .||..||--||=.|
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~----------y~ddW~kVa~hVg--------~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEM----------YGDDWNKVADHVG--------TKSQEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHH----------hcccHHHHHhccC--------CCCHHHHHHHHHhc
Confidence 4566779999999999987422 1347999999995 38999999888665
No 17
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=89.62 E-value=0.52 Score=47.08 Aligned_cols=46 Identities=33% Similarity=0.465 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHH
Q 025651 21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (250)
Q Consensus 21 r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~L 84 (250)
+...||.+|+++||+.-... ..+|..||..|.. ||..||--+|=.|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~y----------gDdW~kVA~HVgt--------Kt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMY----------GDDWDKVARHVGT--------KTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHh----------hhhHHHHHHHhCC--------CCHHHHHHHHHcC
Confidence 56699999999998753211 2479999999952 8999999887665
No 18
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=83.59 E-value=3 Score=36.54 Aligned_cols=58 Identities=28% Similarity=0.559 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhh-hcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHH-HHHHHHHHH
Q 025651 20 GREDCWSEGATGTLIEAWGDRYVRL-NRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRI-DTLKKKYKI 90 (250)
Q Consensus 20 ~r~~~WSe~ET~~LLeawger~~ql-~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKi-d~LKKrYKk 90 (250)
.|.+.||.++-.+|-+++ +.. ..|+.+-..+++|+..++ +|..+|.-+| ..++++|..
T Consensus 3 ~rqdawt~e~d~llae~v----l~~i~eg~tql~afe~~g~~L~---------rt~aac~fRwNs~vrk~Yee 62 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVV----LRHIREGGTQLKAFEEVGDALK---------RTAAACGFRWNSVVRKQYQE 62 (170)
T ss_pred chhhhhhhHHHHHHHHHH----HHHHhccchHHHHHHHHHHHHh---------hhHHHHHhHHHHHHHHHHHH
Confidence 467899999999885544 443 346666677889988886 6999999999 456777766
No 19
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=81.43 E-value=2.5 Score=43.45 Aligned_cols=67 Identities=18% Similarity=0.361 Sum_probs=49.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHH---hhh--------c----CCCChhh-HHHHHHHHHcccCCCCCCCCHHHHHHHHHH
Q 025651 20 GREDCWSEGATGTLIEAWGDRYV---RLN--------R----GHLRQKD-WKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (250)
Q Consensus 20 ~r~~~WSe~ET~~LLeawger~~---ql~--------r----g~lR~k~-W~eVA~~v~~r~~g~k~~rT~~QCrnKid~ 83 (250)
-....||-+|...||++..+... |.. + +.|...+ |-.|++.+- .|+..|||.|+-.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~--------TR~~~qCr~Kw~k 505 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLG--------TRSRIQCRYKWYK 505 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhc--------CCCcchHHHHHHH
Confidence 46679999999999999987444 331 1 1233333 999999442 2789999999999
Q ss_pred HHHHHHHhhCC
Q 025651 84 LKKKYKIEKAK 94 (250)
Q Consensus 84 LKKrYKkeK~~ 94 (250)
|-..|=.-+..
T Consensus 506 l~~~~s~n~~~ 516 (607)
T KOG0051|consen 506 LTTSPSFNKRQ 516 (607)
T ss_pred HHhhHHhhccc
Confidence 99988766655
No 20
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=80.98 E-value=4.2 Score=35.41 Aligned_cols=60 Identities=25% Similarity=0.463 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHH-HHHHHHHh
Q 025651 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT-LKKKYKIE 91 (250)
Q Consensus 20 ~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~-LKKrYKke 91 (250)
.|-+.||+++-++|-++-= ++ +..|+..-.-+++|++.+| ||+.=|.-||.. ++|+|..+
T Consensus 2 ~RQDAWT~eeDlLLAEtVL-rh--IReG~TQL~AFeEvg~~L~---------RTsAACGFRWNs~VRkqY~~~ 62 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVL-RH--IREGSTQLSAFEEVGRALN---------RTAAACGFRWNAYVRKQYEEA 62 (161)
T ss_pred ccccccccHHHHHHHHHHH-HH--HhcchHHHHHHHHHHHHHc---------ccHHHhcchHHHHHHHHHHHH
Confidence 4678999999998877632 22 2346554467999999995 799999999985 67789875
No 21
>PF03353 Lin-8: Ras-mediated vulval-induction antagonist; InterPro: IPR005020 This is a family of Caenorhabditis elegans proteins of unknown function.
Probab=78.80 E-value=4.9 Score=37.36 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHhhHHHhh-hcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHH-----h-hCCCC
Q 025651 24 CWSEGATGTLIEAWGDRYVRL-NRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI-----E-KAKPP 96 (250)
Q Consensus 24 ~WSe~ET~~LLeawger~~ql-~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKk-----e-K~~~~ 96 (250)
.|...-..++|..-+..-.-. ..+.....+|..||-.|-.|-| ...+..+++.=|.+-|...|. + +.+.+
T Consensus 19 ~~~~~~kk~il~~i~~~p~lw~~~~~~~~~~~~~v~v~vy~Rtg---~~~~~~~i~~~~~~aK~~Lr~~l~~~I~~~~l~ 95 (313)
T PF03353_consen 19 KKDVELKKVILSEIEKFPELWKKKSRVPNEEWEEVAVEVYKRTG---KLVSVKHIRSIFKNAKDSLRRRLRKCIKKKKLS 95 (313)
T ss_pred hhhHHHHHHHHHHHhcChHhhhccCCccHHHHHHHHHHHHHHHh---hhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444444555444432222 3445556789999999999854 457888888888777776665 2 22322
Q ss_pred -------CCCCcchHHH
Q 025651 97 -------PSKWPFYYRL 106 (250)
Q Consensus 97 -------~s~W~fFd~L 106 (250)
-..|+||..|
T Consensus 96 ~~~~E~~L~~W~~Y~~~ 112 (313)
T PF03353_consen 96 PEETEEKLWKWELYPFI 112 (313)
T ss_pred HHHHHHHHHcCCccchh
Confidence 3579988755
No 22
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=76.03 E-value=4.3 Score=40.24 Aligned_cols=43 Identities=26% Similarity=0.538 Sum_probs=33.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHH
Q 025651 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKN 79 (250)
Q Consensus 20 ~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrn 79 (250)
--.+.||..|-.+||++-. .++-|| |++||+.|- .||..+|+.
T Consensus 70 i~~~~WtadEEilLLea~~----t~G~GN-----W~dIA~hIG--------tKtkeeck~ 112 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAE----TYGFGN-----WQDIADHIG--------TKTKEECKE 112 (438)
T ss_pred CCCCCCChHHHHHHHHHHH----HhCCCc-----HHHHHHHHc--------ccchHHHHH
Confidence 3356899999999999853 345564 999999994 379999974
No 23
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=73.08 E-value=15 Score=36.98 Aligned_cols=55 Identities=31% Similarity=0.352 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 025651 179 AACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKRK 241 (250)
Q Consensus 179 ~~~~~la~ai~~f~e~yer~E~~K~~~~~elEk~Rmef~kdlE~~R~~~~~~~Q~ei~~~~~~ 241 (250)
+++.||-..|+.+-- =||..|-+|-+|||+.|-+ ||..++ |-.+-||||.+||.+
T Consensus 569 ~s~delr~qi~el~~---ive~lk~~~~kel~kl~~d----leeek~-mr~~lemei~~lkka 623 (627)
T KOG4348|consen 569 NSLDELRAQIIELLC---IVEALKKDHGKELEKLRKD----LEEEKT-MRSNLEMEIEKLKKA 623 (627)
T ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHH-HHhhhHhhHHHHHHH
Confidence 366677666655444 4788899999999999988 776654 566899999999976
No 24
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=71.69 E-value=6.5 Score=41.27 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=41.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHH
Q 025651 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (250)
Q Consensus 18 ~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrY 88 (250)
+..+.+.||.+|...|+.+=.. .+...|+-||..+- ..|++-||-.||++=-+..
T Consensus 249 P~~nk~~WS~EE~E~L~AiA~A---------~~~~~W~~IA~~Lg-------t~RS~yQC~~kF~t~~~~L 303 (939)
T KOG0049|consen 249 PKWNKEHWSNEEVEKLKALAEA---------PKFVSWPMIALNLG-------TNRSSYQCMEKFKTEVSQL 303 (939)
T ss_pred CccchhccChHHHHHHHHHHhc---------cccccHHHHHHHhC-------CCcchHHHHHHHHHHHHHH
Confidence 4678899999999999876332 12346999999982 4689999999998755443
No 25
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=70.33 E-value=15 Score=26.38 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhH---HHHHHHHHcccCCCCCCCCHHHHHHHHHH
Q 025651 21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDW---KEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (250)
Q Consensus 21 r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W---~eVA~~v~~r~~g~k~~rT~~QCrnKid~ 83 (250)
++..||+++-..+|+++.. ++.| +| ..|++.|.. ...|..||+.-...
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~----~G~g-----~~a~pk~I~~~~~~------~~lT~~qV~SH~QK 52 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQK----LGGP-----DWATPKRILELMVV------DGLTRDQVASHLQK 52 (57)
T ss_pred CCCCCCHHHHHHHHHHHHH----hCCC-----cccchHHHHHHcCC------CCCCHHHHHHHHHH
Confidence 4678999999999998753 4444 58 889988853 12499999976543
No 26
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=69.92 E-value=15 Score=32.92 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=43.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHH-HHHHHHHhh
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT-LKKKYKIEK 92 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~-LKKrYKkeK 92 (250)
.-....||++|..+||.+.... || -|..||..| +.||+--.||=|.+ |||++++..
T Consensus 59 ~ikrg~fT~eEe~~Ii~lH~~~------GN----rWs~IA~~L--------PGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 59 DLKRGNFSDEEEDLIIKLHALL------GN----RWSLIAGRL--------PGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred CccCCCCCHHHHHHHHHHHHHH------Cc----HHHHHHhhC--------CCcCHHHHHHHHHHHHHHHHHHcC
Confidence 3456689999999999876432 32 299999998 55999999887765 588888765
No 27
>PF15444 TMEM247: Transmembrane protein 247
Probab=62.47 E-value=11 Score=33.77 Aligned_cols=14 Identities=57% Similarity=0.738 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhh
Q 025651 204 KQMMELEKERLEFI 217 (250)
Q Consensus 204 ~~~~elEk~Rmef~ 217 (250)
..-+||||.||||.
T Consensus 101 ~~emELEKvRMEFE 114 (218)
T PF15444_consen 101 NTEMELEKVRMEFE 114 (218)
T ss_pred chhhHHHHHHHHHH
Confidence 45579999999986
No 28
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=43.34 E-value=39 Score=22.58 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=19.3
Q ss_pred hHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHH
Q 025651 53 DWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (250)
Q Consensus 53 ~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LK 85 (250)
-|.+||+.|. -|...|..||+.|+
T Consensus 19 s~~~la~~lg---------lS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 19 SYAELAEELG---------LSESTVRRRIRRLE 42 (42)
T ss_dssp -HHHHHHHHT---------S-HHHHHHHHHHHH
T ss_pred cHHHHHHHHC---------cCHHHHHHHHHHhC
Confidence 4889999994 58899999999985
No 29
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=37.41 E-value=1.8e+02 Score=23.36 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Q 025651 202 KQKQMMELEKERLEFIKDVECERMNM 227 (250)
Q Consensus 202 K~~~~~elEk~Rmef~kdlE~~R~~~ 227 (250)
+.++...|++.|.+...|.+.++.+|
T Consensus 67 r~~EkEqL~~Lk~kl~~e~~~~~k~i 92 (100)
T PF04568_consen 67 RKKEKEQLKKLKEKLKEEIEHHRKEI 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778888888666666676663
No 30
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=36.52 E-value=37 Score=29.98 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=21.7
Q ss_pred HHHHHHHHcccCCCCCCCCHHHHHHHHHHHH
Q 025651 55 KEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (250)
Q Consensus 55 ~eVA~~v~~r~~g~k~~rT~~QCrnKid~LK 85 (250)
..+|+.++..+ +.-+-.||++||+.=-
T Consensus 134 ~~MA~eL~~~h----Pew~~~TC~~RI~~wL 160 (176)
T PF06576_consen 134 RKMAEELNEKH----PEWCLRTCRRRIDWWL 160 (176)
T ss_pred HHHHHHHhccC----CcccHHHHHHHHHHHH
Confidence 35899998854 7789999999998643
No 31
>COG1422 Predicted membrane protein [Function unknown]
Probab=35.62 E-value=2.7e+02 Score=25.16 Aligned_cols=52 Identities=29% Similarity=0.273 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHh
Q 025651 185 ARAILKFGEIYERIESAKQKQMMELEKERLEFI--------KDVECERMNMFMGAQLEIQKS 238 (250)
Q Consensus 185 a~ai~~f~e~yer~E~~K~~~~~elEk~Rmef~--------kdlE~~R~~~~~~~Q~ei~~~ 238 (250)
..-+++|-=-+||++.- +++|.|+.+...|+. +.|+.+++||. +-|.|+.|.
T Consensus 61 ~~i~~~~liD~ekm~~~-qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~-~~Q~elmk~ 120 (201)
T COG1422 61 ITILQKLLIDQEKMKEL-QKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMM-DDQRELMKM 120 (201)
T ss_pred HHHHHHHhccHHHHHHH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 33445555566777765 456777777766665 46777777755 667777654
No 32
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=34.47 E-value=89 Score=32.82 Aligned_cols=21 Identities=43% Similarity=0.482 Sum_probs=11.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH
Q 025651 209 LEKERLEFIKDVECERMNMFMG 230 (250)
Q Consensus 209 lEk~Rmef~kdlE~~R~~~~~~ 230 (250)
||+.|||.. -||++||.+...
T Consensus 665 LERErmErE-RLEreRM~ve~e 685 (940)
T KOG4661|consen 665 LERERMERE-RLERERMKVEEE 685 (940)
T ss_pred HHHHHHHHH-HHHHHHHHHHHh
Confidence 444444422 266777666544
No 33
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=33.80 E-value=40 Score=30.28 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHH
Q 025651 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (250)
Q Consensus 23 ~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~ 83 (250)
..||.+|-..|++. ++.. |. .-|.-||...- -.|++++||-||-|
T Consensus 10 GpWt~EED~~L~~~-----V~~~-G~---~~W~~i~k~~g-------l~R~GKSCRlRW~N 54 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRS-----IKSF-GK---HNGTALPKLAG-------LRRCGKSCRLRWTN 54 (238)
T ss_pred CCCChHHHHHHHHH-----HHHh-CC---CCcchhhhhcC-------CCccchHHHHHhhc
Confidence 58999999998863 3221 11 15888888773 24889999999865
No 34
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=30.84 E-value=2.6e+02 Score=26.44 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHH
Q 025651 186 RAILKFGEIYERIESAKQKQMMELEKERLEFI-KDVECERMNMFMGAQLE 234 (250)
Q Consensus 186 ~ai~~f~e~yer~E~~K~~~~~elEk~Rmef~-kdlE~~R~~~~~~~Q~e 234 (250)
+.++.=-|.+.|.|+.+.+.-.+|..+|+.-. .++||+|-.++.++..|
T Consensus 133 e~lk~QEes~~rqE~~Rr~Te~~i~~~r~~t~~~eaeL~~e~~~~k~~AE 182 (276)
T PF12037_consen 133 ELLKMQEESVIRQEQMRRATEEQILAQRRQTEEEEAELRRETERAKAEAE 182 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55667778999999999999888888777644 67888888777777766
No 35
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=30.68 E-value=94 Score=33.09 Aligned_cols=50 Identities=26% Similarity=0.546 Sum_probs=37.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHH
Q 025651 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (250)
Q Consensus 18 ~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~L 84 (250)
++..-..|+++|-..|+.+-.+. ..++|-.|-..| +.|++.|||.|.-+.
T Consensus 356 Psikhg~wt~~ED~~L~~AV~~Y---------g~kdw~k~R~~v--------PnRSdsQcR~RY~nv 405 (939)
T KOG0049|consen 356 PSVKHGRWTDQEDVLLVCAVSRY---------GAKDWAKVRQAV--------PNRSDSQCRERYTNV 405 (939)
T ss_pred ccccCCCCCCHHHHHHHHHHHHh---------CccchhhHHHhc--------CCccHHHHHHHHHHH
Confidence 34555589999999999875432 146898888888 668999999987553
No 36
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=30.37 E-value=2.3e+02 Score=20.98 Aligned_cols=46 Identities=22% Similarity=0.191 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 025651 187 AILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKS 238 (250)
Q Consensus 187 ai~~f~e~yer~E~~K~~~~~elEk~Rmef~kdlE~~R~~~~~~~Q~ei~~~ 238 (250)
-|..|+++|..||.-+.+...+|.. . +-.-+..+|-.++|.+..++
T Consensus 5 el~~fA~A~~~ie~ir~~~~~~l~~-----~-~~~~~~~~l~~~a~~~~~~~ 50 (78)
T PF13767_consen 5 ELDQFARAVLEIEPIRQEYQQELQA-----A-EDPEEIQELQEEAQEEMVEA 50 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----c-cCHHHHHHHHHHHHHHHHHH
Confidence 5788999999999988888777766 1 12345555566666665544
No 37
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=29.96 E-value=2.4e+02 Score=28.43 Aligned_cols=52 Identities=27% Similarity=0.219 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 025651 180 ACRELARAILKFGEIYERIESAKQKQMME-----LEKERLEFIKDVECERMNMFMGAQLE 234 (250)
Q Consensus 180 ~~~~la~ai~~f~e~yer~E~~K~~~~~e-----lEk~Rmef~kdlE~~R~~~~~~~Q~e 234 (250)
=|-.-|+-.|+=+|.|-||-.+|-+++.| +=|.|+. |.|.+|.+.|++.|+.
T Consensus 368 MFQ~kAdEARrEAE~LqrI~~aK~~k~EEEYas~~~kl~l~---eaee~r~~~~eelk~~ 424 (446)
T PF07227_consen 368 MFQLKADEARREAEGLQRIALAKSEKIEEEYASRYLKLRLN---EAEEERKKKFEELKVL 424 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHH
Confidence 45567888899999999999999988765 4455555 8899999999887764
No 38
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=28.11 E-value=3.1e+02 Score=25.87 Aligned_cols=21 Identities=38% Similarity=0.321 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025651 191 FGEIYERIESAKQKQMMELEK 211 (250)
Q Consensus 191 f~e~yer~E~~K~~~~~elEk 211 (250)
|.|+.+-+|..+.-.+.++|+
T Consensus 175 L~Ei~Ea~e~~~~~~~~e~ek 195 (269)
T PF05278_consen 175 LEEILEAKEIYDQHETREEEK 195 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 39
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=27.63 E-value=53 Score=33.78 Aligned_cols=23 Identities=39% Similarity=0.741 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHcccCCCCCCCCHHHHHHHHH
Q 025651 52 KDWKEVAESVNSRENGVKPKKTDIQCKNRID 82 (250)
Q Consensus 52 k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid 82 (250)
..|.+||.-++. +|..||+++|.
T Consensus 28 nqws~i~sll~~--------kt~rqC~~rw~ 50 (617)
T KOG0050|consen 28 NQWSRIASLLNR--------KTARQCKARWE 50 (617)
T ss_pred HHHHHHHHHHhh--------cchhHHHHHHH
No 40
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=27.42 E-value=80 Score=26.80 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHHHH
Q 025651 70 PKKTDIQCKNRIDTLK 85 (250)
Q Consensus 70 ~~rT~~QCrnKid~LK 85 (250)
+.-|+.||+.||...+
T Consensus 148 ~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 148 MQHTPGQLRRKIRKYK 163 (164)
T ss_pred ccCCHHHHHHHHHHhc
Confidence 5679999999987754
No 41
>PRK13271 treA trehalase; Provisional
Probab=27.06 E-value=53 Score=33.80 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhH
Q 025651 19 GGREDCWSEGATGTLIEAWGDR 40 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger 40 (250)
-..++.||.+-++.||+.|+.+
T Consensus 518 ~q~GFGWTNgV~L~lL~~~~~~ 539 (569)
T PRK13271 518 LQDGFGWTNGVTLKMLDLICPK 539 (569)
T ss_pred CCCCcCcHHHHHHHHHHhcCcc
Confidence 3568999999999999988765
No 42
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=24.41 E-value=33 Score=24.27 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCcchHHHHHhhC
Q 025651 75 IQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLIG 111 (250)
Q Consensus 75 ~QCrnKid~LKKrYKkeK~~~~~s~W~fFd~LD~Llg 111 (250)
+-|+.|+++|..--...+-+.-...=..|..||.||.
T Consensus 9 E~Cr~kfd~l~~Hi~s~~Hr~FA~~~~Nf~~lD~Li~ 45 (49)
T smart00586 9 ENCREKYDDLETHLLSEKHRRFAENNDNFQALDDLIS 45 (49)
T ss_pred ccHhHHHhhHHHHhccHHHHHHHcCchhHHHHHHHHH
Confidence 5699999999886665554432223356888888875
No 43
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.18 E-value=3.5e+02 Score=28.65 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025651 179 AACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKR 240 (250)
Q Consensus 179 ~~~~~la~ai~~f~e~yer~E~~K~~~~~elEk~Rmef~kdlE~~R~~~~~~~Q~ei~~~~~ 240 (250)
..++|+.+...-..+-.--.|..+|+---|+|+.+.. .|.-. +.|.+.|+||.++|.
T Consensus 79 r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~k----iEelk-~~i~~~q~eL~~Lk~ 135 (907)
T KOG2264|consen 79 RILREQKRILASVSLELTELEVKRQELNSEIEEINTK----IEELK-RLIPQKQLELSALKG 135 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHH-HHHHHhHHHHHHHHh
Confidence 3455665555555555566777778878888887766 33322 235567777776664
No 44
>PF15419 LNP1: Leukemia NUP98 fusion partner 1
Probab=23.04 E-value=88 Score=27.66 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q 025651 185 ARAILKFGEIYER 197 (250)
Q Consensus 185 a~ai~~f~e~yer 197 (250)
.-+|+.|.|.||+
T Consensus 107 shSIqeFSESFEq 119 (177)
T PF15419_consen 107 SHSIQEFSESFEQ 119 (177)
T ss_pred cccHHHHHHHHHH
Confidence 3459999999998
No 45
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=22.56 E-value=46 Score=34.31 Aligned_cols=50 Identities=22% Similarity=0.457 Sum_probs=28.5
Q ss_pred HHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCC-----------CCCCcc-hHHHHHhhC
Q 025651 56 EVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKPP-----------PSKWPF-YYRLDSLIG 111 (250)
Q Consensus 56 eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~~~~-----------~s~W~f-Fd~LD~Llg 111 (250)
+||++|+....+|.. =|+|+-.|.-.|-.|.-.+. .++||| |.++|.+.-
T Consensus 631 qvaEKVk~FF~~Y~i------NRHKmTvlTPsyHAE~YspeDnRfDlRpFLynp~w~wqfkkIde~v~ 692 (706)
T KOG2303|consen 631 QVAEKVKRFFSYYSI------NRHKMTVLTPSYHAENYSPEDNRFDLRPFLYNPSWPWQFKKIDEQVE 692 (706)
T ss_pred HHHHHHHHHHhhhee------ccccceecccccccccCCCccccccccccccCCCCchHHHHHHHHHH
Confidence 466666554333222 24566666666666554331 467887 788888764
No 46
>PF04231 Endonuclease_1: Endonuclease I; InterPro: IPR007346 Bacterial periplasmic or secreted (3.1.21.1 from EC) Escherichia coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown []. Other family members are known to be extracellular []. This family also includes a non-specific, Mg2+-activated ribonuclease precursor (Q03091 from SWISSPROT) [].; GO: 0004518 nuclease activity; PDB: 1OUO_A 1OUP_B 2IVK_C 2VND_A 2PU3_A 2G7F_A 2G7E_A.
Probab=21.91 E-value=2.3e+02 Score=25.60 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 025651 182 RELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQ 232 (250)
Q Consensus 182 ~~la~ai~~f~e~yer~E~~K~~~~~elEk~Rmef~kdlE~~R~~~~~~~Q 232 (250)
..||+|+-=|...|+-+.-.+.+..+=++--+.+=.-+.|++|.+.|...|
T Consensus 157 GdIARa~fYm~~rY~~~~~~~~~~~~l~~W~~~DPVd~~E~~RN~~I~~~Q 207 (218)
T PF04231_consen 157 GDIARAYFYMATRYEGLPLSDQQRQLLLAWHKEDPVDEWERERNNRIYKIQ 207 (218)
T ss_dssp HHHHHHHHHHHHHC-T----HHHHHHHHHHHHHS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCchhHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence 489999999999998888888777777777888877899999999988866
No 47
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=21.48 E-value=1.3e+02 Score=22.41 Aligned_cols=30 Identities=30% Similarity=0.617 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 025651 51 QKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI 90 (250)
Q Consensus 51 ~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKk 90 (250)
++.|.+||..+.=. ...+.. ...|++.|.+
T Consensus 57 ~~~W~~va~~lg~~-----~~~~~~-----~~~L~~~Y~~ 86 (92)
T PF01388_consen 57 NKKWREVARKLGFP-----PSSTSA-----AQQLRQHYEK 86 (92)
T ss_dssp HTTHHHHHHHTTS------TTSCHH-----HHHHHHHHHH
T ss_pred cchHHHHHHHhCCC-----CCCCcH-----HHHHHHHHHH
Confidence 45699999999421 112222 6677777765
No 48
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.61 E-value=4.9e+02 Score=21.43 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025651 195 YERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKR 240 (250)
Q Consensus 195 yer~E~~K~~~~~elEk~Rmef~kdlE~~R~~~~~~~Q~ei~~~~~ 240 (250)
=...+..+.+.-.++++++-++..+|+.++.++..+.+.|+.-+..
T Consensus 87 ~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~ 132 (141)
T PRK08476 87 KEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKE 132 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3344444555556666666666677888888888888877776654
No 49
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.09 E-value=2.1e+02 Score=22.42 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025651 182 RELARAILKFGEIYERIESAKQKQMMELE 210 (250)
Q Consensus 182 ~~la~ai~~f~e~yer~E~~K~~~~~elE 210 (250)
...+..++.|-|..||+|.-|-.-+-++-
T Consensus 10 tva~~QLrafIerIERlEeEk~~i~~dik 38 (85)
T COG3750 10 TVAAGQLRAFIERIERLEEEKKTIADDIK 38 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999987766654
Done!