Query 025651
Match_columns 250
No_of_seqs 175 out of 254
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:41:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.8 3.5E-21 1.2E-25 146.1 8.0 82 20-105 2-86 (86)
2 3sjm_A Telomeric repeat-bindin 98.0 1.4E-05 4.8E-10 57.5 6.4 53 19-86 8-60 (64)
3 2cu7_A KIAA1915 protein; nucle 97.9 4.7E-05 1.6E-09 55.4 8.0 56 15-88 2-57 (72)
4 2d9a_A B-MYB, MYB-related prot 97.8 4.2E-05 1.4E-09 53.6 6.2 51 17-84 3-53 (60)
5 1x41_A Transcriptional adaptor 97.8 6E-05 2E-09 53.1 6.5 50 18-84 4-53 (60)
6 2elk_A SPCC24B10.08C protein; 97.7 0.00015 5.1E-09 50.8 7.5 47 22-84 9-55 (58)
7 1w0t_A Telomeric repeat bindin 97.7 8.5E-05 2.9E-09 50.9 5.9 49 23-86 3-51 (53)
8 2yus_A SWI/SNF-related matrix- 97.6 7.4E-05 2.5E-09 55.9 5.7 49 18-84 14-62 (79)
9 2dim_A Cell division cycle 5-l 97.6 0.00012 4.1E-09 52.8 6.5 52 15-83 2-53 (70)
10 2yum_A ZZZ3 protein, zinc fing 97.6 0.00018 6.2E-09 52.4 7.0 54 18-83 4-57 (75)
11 1guu_A C-MYB, MYB proto-oncoge 97.6 0.00011 3.7E-09 50.0 5.2 46 22-84 3-48 (52)
12 2k9n_A MYB24; R2R3 domain, DNA 97.4 0.00039 1.3E-08 53.8 7.4 51 20-88 51-101 (107)
13 1ity_A TRF1; helix-turn-helix, 97.4 0.00036 1.2E-08 50.2 6.5 53 19-86 7-59 (69)
14 1gvd_A MYB proto-oncogene prot 97.4 0.00021 7E-09 48.6 4.8 46 22-84 3-48 (52)
15 2din_A Cell division cycle 5-l 97.4 0.00056 1.9E-08 48.7 7.1 53 18-89 5-57 (66)
16 3osg_A MYB21; transcription-DN 97.4 0.00023 8E-09 56.7 5.4 51 20-88 60-110 (126)
17 2llk_A Cyclin-D-binding MYB-li 97.4 0.00028 9.6E-09 52.2 5.4 51 18-87 19-69 (73)
18 2cqr_A RSGI RUH-043, DNAJ homo 97.3 0.00032 1.1E-08 51.9 5.7 54 19-86 15-68 (73)
19 2ltp_A Nuclear receptor corepr 96.4 4E-05 1.4E-09 58.3 0.0 57 15-89 9-65 (89)
20 1gv2_A C-MYB, MYB proto-oncoge 97.1 0.00034 1.2E-08 53.6 4.1 51 19-87 53-103 (105)
21 2cjj_A Radialis; plant develop 97.1 0.0017 5.8E-08 50.1 7.6 59 22-94 8-66 (93)
22 2juh_A Telomere binding protei 97.1 0.0035 1.2E-07 50.6 9.6 77 17-108 12-88 (121)
23 2roh_A RTBP1, telomere binding 97.0 0.0027 9.1E-08 51.4 8.1 59 18-89 27-85 (122)
24 2ckx_A NGTRF1, telomere bindin 96.9 0.0014 4.8E-08 49.5 5.6 53 24-89 2-54 (83)
25 2cqq_A RSGI RUH-037, DNAJ homo 96.8 0.0053 1.8E-07 45.1 8.0 55 19-88 5-59 (72)
26 1h8a_C AMV V-MYB, MYB transfor 96.7 0.0006 2.1E-08 54.2 2.4 50 20-87 77-126 (128)
27 2aje_A Telomere repeat-binding 96.7 0.0022 7.7E-08 50.5 5.3 58 17-87 8-65 (105)
28 1wgx_A KIAA1903 protein; MYB D 96.6 0.0055 1.9E-07 45.5 6.8 55 17-85 3-57 (73)
29 1h89_C C-MYB, MYB proto-oncoge 96.4 0.0014 4.8E-08 53.8 2.4 50 19-86 107-156 (159)
30 3osg_A MYB21; transcription-DN 96.4 0.005 1.7E-07 48.9 5.5 48 19-84 8-55 (126)
31 1h8a_C AMV V-MYB, MYB transfor 96.3 0.0057 1.9E-07 48.5 5.6 48 19-83 24-71 (128)
32 3zqc_A MYB3; transcription-DNA 96.3 0.0021 7.2E-08 51.4 2.8 49 20-86 52-100 (131)
33 1gv2_A C-MYB, MYB proto-oncoge 96.1 0.0065 2.2E-07 46.4 4.8 45 22-83 4-48 (105)
34 2k9n_A MYB24; R2R3 domain, DNA 96.1 0.0084 2.9E-07 46.2 5.4 44 23-83 2-45 (107)
35 2eqr_A N-COR1, N-COR, nuclear 95.8 0.014 4.7E-07 41.1 5.2 48 18-83 8-55 (61)
36 1x58_A Hypothetical protein 49 95.8 0.022 7.5E-07 41.1 6.1 56 17-87 3-58 (62)
37 1h89_C C-MYB, MYB proto-oncoge 95.6 0.015 5.1E-07 47.6 5.1 48 20-84 56-103 (159)
38 2iw5_B Protein corest, REST co 95.5 0.02 6.7E-07 50.9 6.1 52 19-88 130-181 (235)
39 1ign_A Protein (RAP1); RAP1,ye 95.4 0.013 4.5E-07 52.4 4.4 53 19-85 5-59 (246)
40 3zqc_A MYB3; transcription-DNA 94.5 0.013 4.4E-07 46.7 1.8 44 24-84 4-47 (131)
41 1ug2_A 2610100B20RIK gene prod 93.5 0.27 9.1E-06 38.1 7.3 63 18-95 29-91 (95)
42 2xag_B REST corepressor 1; ami 91.6 0.25 8.6E-06 48.0 6.1 44 20-81 378-421 (482)
43 2yqk_A Arginine-glutamic acid 90.2 0.61 2.1E-05 32.8 5.5 47 15-79 2-49 (63)
44 1fex_A TRF2-interacting telome 87.5 0.8 2.7E-05 32.0 4.6 53 22-83 2-55 (59)
45 3hm5_A DNA methyltransferase 1 84.8 2.1 7.3E-05 32.8 6.1 60 23-95 31-90 (93)
46 2lr8_A CAsp8-associated protei 81.5 0.34 1.1E-05 35.6 0.0 58 19-92 11-68 (70)
47 2crg_A Metastasis associated p 72.5 4.9 0.00017 28.7 4.4 44 18-79 4-48 (70)
48 1gmj_A ATPase inhibitor; coile 72.2 15 0.00052 27.7 7.2 52 186-238 13-70 (84)
49 4a69_C Nuclear receptor corepr 69.9 3.8 0.00013 31.0 3.5 41 21-79 42-82 (94)
50 4eef_G F-HB80.4, designed hema 55.3 1.9 6.5E-05 31.9 -0.6 47 20-80 18-64 (74)
51 4iej_A DNA methyltransferase 1 48.7 42 0.0015 25.6 6.0 58 23-93 31-88 (93)
52 3oja_B Anopheles plasmodium-re 34.4 2E+02 0.0068 26.9 9.6 29 200-228 533-561 (597)
53 2v4h_A NF-kappa-B essential mo 30.8 1.9E+02 0.0066 22.6 7.6 51 180-237 25-75 (110)
54 2jee_A YIIU; FTSZ, septum, coi 27.7 1.9E+02 0.0064 21.5 7.6 40 193-233 6-45 (81)
55 3vem_A Helicase protein MOM1; 26.6 1E+02 0.0036 24.3 5.1 12 199-210 56-67 (115)
56 2hzd_A Transcriptional enhance 21.8 1.8E+02 0.0061 21.6 5.3 65 21-91 5-78 (82)
57 1ign_A Protein (RAP1); RAP1,ye 21.3 1.9E+02 0.0064 25.7 6.2 37 47-91 167-203 (246)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.84 E-value=3.5e-21 Score=146.08 Aligned_cols=82 Identities=17% Similarity=0.336 Sum_probs=73.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC---C
Q 025651 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP---P 96 (250)
Q Consensus 20 ~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~~~---~ 96 (250)
.|...||++||.+||++|++...++..+..+...|++||+.|.+++ |.+|+.||++||++|++.||++|+++ +
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G----~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG 77 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKG----FDRSPDMCTDKWRNLLKEFKKAKHHDRGNG 77 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHCSCSSCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3678999999999999999999999888877788999999999864 67999999999999999999999975 3
Q ss_pred CCCCcchHH
Q 025651 97 PSKWPFYYR 105 (250)
Q Consensus 97 ~s~W~fFd~ 105 (250)
+.+|+||+.
T Consensus 78 ~~~~~yf~e 86 (86)
T 2ebi_A 78 SAKMSYYKE 86 (86)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCc
Confidence 569999973
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.99 E-value=1.4e-05 Score=57.52 Aligned_cols=53 Identities=15% Similarity=0.320 Sum_probs=39.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHH
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKK 86 (250)
..+...||.+|...|+++.... | ...|..||..+-- ..||+.||++|+.+|.|
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~------G---~~~W~~Ia~~~~~------~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKY------G---EGNWAAISKNYPF------VNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHH------C---TTCHHHHHHHSCC------SSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHcc------C---CCchHHHHhhcCC------CCCCHHHHHHHHHHHhc
Confidence 3455689999999999886542 2 1259999987621 24999999999999976
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.90 E-value=4.7e-05 Score=55.44 Aligned_cols=56 Identities=14% Similarity=0.283 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHH
Q 025651 15 ATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (250)
Q Consensus 15 ~~~~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrY 88 (250)
+.++......||.+|-..||+++... |+ .|..||..|. .||+.||++++.++-++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~------G~----~W~~Ia~~~~--------~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKF------GR----RWTKISKLIG--------SRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHT------CS----CHHHHHHHHS--------SSCHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHH------Cc----CHHHHHHHcC--------CCCHHHHHHHHHHHHHHH
Confidence 34456677799999999999987642 33 6999999883 389999999999876553
No 4
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.81 E-value=4.2e-05 Score=53.59 Aligned_cols=51 Identities=27% Similarity=0.448 Sum_probs=39.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHH
Q 025651 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (250)
Q Consensus 17 ~~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~L 84 (250)
++......||.+|...|+++.... | ...|..||..|. .||+.||++++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~------G---~~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQF------G---QQDWKFLASHFP--------NRTDQQCQYRWLRV 53 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHT------C---TTCHHHHHHHCS--------SSCHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHh------C---CCCHHHHHHHcc--------CCCHHHHHHHHHHH
Confidence 445667799999999999987542 2 136999999983 38999999998764
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.77 E-value=6e-05 Score=53.09 Aligned_cols=50 Identities=26% Similarity=0.504 Sum_probs=38.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHH
Q 025651 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (250)
Q Consensus 18 ~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~L 84 (250)
+.-....||.+|-..||++.... | ...|..||..|. .||+.||++++.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~------G---~~~W~~Ia~~~~--------~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDC------G---FGNWQDVANQMC--------TKTKEECEKHYMKY 53 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHT------C---TTCHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH------C---cCcHHHHHHHhC--------CCCHHHHHHHHHHH
Confidence 35566689999999999986432 2 136999999993 38999999998764
No 6
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.69 E-value=0.00015 Score=50.81 Aligned_cols=47 Identities=21% Similarity=0.502 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHH
Q 025651 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (250)
Q Consensus 22 ~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~L 84 (250)
...||.+|-..||++.... | ...|..||..|.. .||+.||++++.++
T Consensus 9 ~~~WT~eED~~L~~~v~~~------G---~~~W~~IA~~~~~-------~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETL------G---LGNWADIADYVGN-------ARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHT------T---TTCHHHHHHHHCS-------SCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH------C---cCCHHHHHHHHCC-------CCCHHHHHHHHHHH
Confidence 4479999999999987542 2 1369999999931 38999999998764
No 7
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.67 E-value=8.5e-05 Score=50.91 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHH
Q 025651 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (250)
Q Consensus 23 ~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKK 86 (250)
..||.+|...|+++.... | ...|..||..|.- ..||+.||++|+.+|.|
T Consensus 3 ~~WT~eEd~~L~~~v~~~------G---~~~W~~Ia~~~~~------~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKY------G---EGNWSKILLHYKF------NNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHH------C---TTCHHHHHHHSCC------SSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH------C---cCCHHHHHHHcCC------CCCCHHHHHHHHHHHHc
Confidence 479999999999987642 2 1269999998831 14899999999999875
No 8
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.65 E-value=7.4e-05 Score=55.92 Aligned_cols=49 Identities=31% Similarity=0.478 Sum_probs=38.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHH
Q 025651 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (250)
Q Consensus 18 ~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~L 84 (250)
.......||.+|...||++... + | ..|..||..|- .||+.||++++.+|
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~----~--G----~~W~~IA~~v~--------~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEM----Y--K----DDWNKVSEHVG--------SRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHH----S--S----SCHHHHHHHHS--------SCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHH----h--C----CCHHHHHHHcC--------CCCHHHHHHHHHHh
Confidence 3455679999999999998543 1 2 36999999993 38999999987654
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=0.00012 Score=52.83 Aligned_cols=52 Identities=23% Similarity=0.472 Sum_probs=40.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHH
Q 025651 15 ATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (250)
Q Consensus 15 ~~~~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~ 83 (250)
+.++..+...||.+|-..|+++.... | ...|..||..|. .||+.||++|+.+
T Consensus 2 ss~~~~k~~~Wt~eED~~L~~~v~~~------G---~~~W~~Ia~~l~--------~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 2 SSGSSGKGGVWRNTEDEILKAAVMKY------G---KNQWSRIASLLH--------RKSAKQCKARWYE 53 (70)
T ss_dssp CSCSCSTTCCCCHHHHHHHHHHHHHT------C---SSCHHHHHHHST--------TCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHH------C---cCCHHHHHHHhc--------CCCHHHHHHHHHH
Confidence 34556777799999999999886542 2 136999999984 3899999998865
No 10
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=0.00018 Score=52.42 Aligned_cols=54 Identities=13% Similarity=0.361 Sum_probs=38.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHH
Q 025651 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (250)
Q Consensus 18 ~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~ 83 (250)
+......||.+|-..|+++... +..+......|..||..|. .||+.||++++.+
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~----~g~~~~~~~~W~~IA~~~~--------~Rt~~qcr~r~~~ 57 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIK----YPPEEVESRRWQKIADELG--------NRTAKQVASQVQK 57 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHH----SCCCSCHHHHHHHHHHHHS--------SSCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH----hCCCCCCcccHHHHHHHhC--------CCCHHHHHHHHHH
Confidence 3455568999999999987643 2211111257999999993 3899999999943
No 11
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.57 E-value=0.00011 Score=49.95 Aligned_cols=46 Identities=26% Similarity=0.596 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHH
Q 025651 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (250)
Q Consensus 22 ~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~L 84 (250)
...||.+|-..|+++.... |+ ..|..||..|. .||+.||++++.++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQN------GT---DDWKVIANYLP--------NRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHH------CS---SCHHHHHHTST--------TCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh------CC---CCHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 3589999999999987642 32 25999999883 38999999999875
No 12
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.43 E-value=0.00039 Score=53.81 Aligned_cols=51 Identities=20% Similarity=0.402 Sum_probs=41.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHH
Q 025651 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (250)
Q Consensus 20 ~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrY 88 (250)
.....||.+|-..||+++... |+ .|..||..| +.||+.||++++.+|.++-
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~------G~----~W~~Ia~~l--------~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEY------GP----KWNKISKFL--------KNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHT------CS----CHHHHHHHH--------SSSCHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHh------Cc----CHHHHHHHC--------CCCCHHHHHHHHHHHHhhH
Confidence 345689999999999987652 32 599999988 2389999999999998863
No 13
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.41 E-value=0.00036 Score=50.17 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=40.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHH
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKK 86 (250)
......||.+|...|+++.... |. ..|..||..|.- ..||+.||++|+.++.+
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~------G~---~~W~~Ia~~~~~------~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKY------GE---GNWSKILLHYKF------NNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHH------CS---SCHHHHHHHSCC------SSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH------CC---CcHHHHHHHcCc------CCCCHHHHHHHHHHHcC
Confidence 4566789999999999887642 21 269999998831 14899999999998865
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.40 E-value=0.00021 Score=48.61 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHH
Q 025651 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (250)
Q Consensus 22 ~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~L 84 (250)
...||.+|...|+++.... |+ ..|..||..|. .||+.||++++.+.
T Consensus 3 k~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKY------GP---KRWSVIAKHLK--------GRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHH------CT---TCHHHHHTTST--------TCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH------Cc---ChHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 3589999999999987542 32 36999999873 38999999998763
No 15
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=0.00056 Score=48.69 Aligned_cols=53 Identities=21% Similarity=0.376 Sum_probs=40.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHH
Q 025651 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYK 89 (250)
Q Consensus 18 ~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYK 89 (250)
+......||.+|-..||++... -|+ .|..||. +- .||+.||++++.++-+.-.
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~------~g~----~W~~Ia~-~~--------gRt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKL------MPT----QWRTIAP-II--------GRTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHH------CTT----CHHHHHH-HH--------SSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH------cCC----CHHHHhc-cc--------CcCHHHHHHHHHHHhChHh
Confidence 3455668999999999998432 132 6999999 63 2899999999999866543
No 16
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.35 E-value=0.00023 Score=56.71 Aligned_cols=51 Identities=27% Similarity=0.480 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHH
Q 025651 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (250)
Q Consensus 20 ~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrY 88 (250)
.....||.+|...||+++... |+ .|..||..| +.||+.||++|+.+|.++.
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~------G~----~W~~Ia~~l--------~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEY------GR----QWAIIAKFF--------PGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHH------CS----CHHHHHTTS--------TTCCHHHHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHH------Cc----CHHHHHHHc--------CCCCHHHHHHHHHHHHHhc
Confidence 344589999999999987654 32 499999866 2489999999999998874
No 17
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.35 E-value=0.00028 Score=52.22 Aligned_cols=51 Identities=16% Similarity=0.310 Sum_probs=41.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHH
Q 025651 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (250)
Q Consensus 18 ~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKr 87 (250)
+......||.+|-..||+++... |+ .|..||..| . ||+.|||+++..|++.
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~------G~----kW~~IA~~l-g--------Rt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKH------GN----DWATIGAAL-G--------RSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHH------SS----CHHHHHHHH-T--------SCHHHHHHHHHHCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH------CC----CHHHHHHHh-C--------CCHHHHHHHHHHHHHH
Confidence 35667799999999999987542 32 299999999 4 7999999999988753
No 18
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.34 E-value=0.00032 Score=51.86 Aligned_cols=54 Identities=26% Similarity=0.471 Sum_probs=40.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHH
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKK 86 (250)
......||.+|..+|+.+... +..+ ....|..||..| +.||+.||++++.+|..
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~----~g~~--~~~rW~~IA~~v--------pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQ----YPRG--SSDCWDKIARCV--------PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHH----SCSS--SHHHHHHHGGGC--------SSSCHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHH----cCCC--CCchHHHHHHHc--------CCCCHHHHHHHHHHHHH
Confidence 445568999999999988642 2212 235699999998 34899999999998853
No 19
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.36 E-value=4e-05 Score=58.29 Aligned_cols=57 Identities=28% Similarity=0.390 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHH
Q 025651 15 ATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYK 89 (250)
Q Consensus 15 ~~~~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYK 89 (250)
+.++......||.+|-..||+++... |+ .|..||..|- .||+.||++++.++.+++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~------G~----~W~~IA~~l~--------gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEH------GR----NWSAIARMVG--------SKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 33455667799999999999988653 32 5999999983 3899999999998887753
No 20
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.14 E-value=0.00034 Score=53.62 Aligned_cols=51 Identities=24% Similarity=0.487 Sum_probs=39.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHH
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKr 87 (250)
......||.+|-..|++++... |+ .|..||..| +.||+.||++++.+|.++
T Consensus 53 ~~~~~~Wt~eEd~~L~~~~~~~------G~----~W~~Ia~~l--------~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 53 EVKKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL--------PGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHH------SS----CHHHHHTTC--------TTCCHHHHHHHHHHHTC-
T ss_pred cccccCCCHHHHHHHHHHHHHh------CC----CHHHHHHHc--------CCCCHHHHHHHHHHHHhc
Confidence 3455689999999999987543 32 599999766 348999999999988654
No 21
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.09 E-value=0.0017 Score=50.07 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q 025651 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAK 94 (250)
Q Consensus 22 ~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~~ 94 (250)
...||.+|-.+|+.+... +..+ ....|..||..| +.||+.||++++.+|...-+.+...
T Consensus 8 ~~~WT~eEd~~L~~al~~----~~~~--~~~rW~~IA~~v--------pGRT~~q~k~ry~~l~~dv~~iesg 66 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAV----YDKD--TPDRWANVARAV--------EGRTPEEVKKHYEILVEDIKYIESG 66 (93)
T ss_dssp CCSCCHHHHHHHHHHHHH----SCTT--CTTHHHHHHHHS--------TTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHH----cCCC--CCchHHHHHHHc--------CCCCHHHHHHHHHHHHHHHHHhhcC
Confidence 447999999999887542 2222 124699999999 2389999999999998776555443
No 22
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.08 E-value=0.0035 Score=50.58 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=54.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCC
Q 025651 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKPP 96 (250)
Q Consensus 17 ~~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~~~~ 96 (250)
+.......||.+|..+|++..... +.| .|..|+.....-. ..||+.||++||.+|.+.-....+.
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~----G~G-----~W~~Ia~~~~~~f----~~RT~v~lKdRWrnllk~~~~~p~~-- 76 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHL----GTG-----RWRDVKMRAFDNA----DHRTYVDLKDKWKTLVHTASIAPQQ-- 76 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHH----GGG-----CHHHHHHHHCSCC----SSCCSHHHHHHHHHHHHHHHTCSTT--
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHH----CCC-----CHHHHHHHhcccc----CCCCHHHHHHHHHHHHhhhccCCcc--
Confidence 346677799999999999877642 222 6999999875421 3599999999999999873332221
Q ss_pred CCCCcchHHHHH
Q 025651 97 PSKWPFYYRLDS 108 (250)
Q Consensus 97 ~s~W~fFd~LD~ 108 (250)
...|+|=+.++.
T Consensus 77 krg~~~p~e~~~ 88 (121)
T 2juh_A 77 RRGEPVPQDLLD 88 (121)
T ss_dssp CCCSCCCHHHHH
T ss_pred cCCCCCCHHHHH
Confidence 335777666544
No 23
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=96.98 E-value=0.0027 Score=51.37 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=45.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHH
Q 025651 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYK 89 (250)
Q Consensus 18 ~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYK 89 (250)
.+.....||.+|..+|++..... +.| .|..|+....... ..||++||++||.||.+.-.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~----G~g-----~W~~I~~~~~~~~----~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHL----GTG-----RWRDVKFRAFENV----HHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHH----SSS-----CHHHHHHHHHSSS----CCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----CCC-----ChHHHHHHhcccc----CCCCHHHHHHHHHHHHhhcc
Confidence 35667799999999999887643 222 6999999764322 35999999999999988643
No 24
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.91 E-value=0.0014 Score=49.50 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHH
Q 025651 24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYK 89 (250)
Q Consensus 24 ~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYK 89 (250)
.||.+|..+|++..... +.| .|..|+..--... ..||++|||+|+.||.++-.
T Consensus 2 ~WT~eEd~~L~~gv~k~----G~g-----~W~~I~~~~~~~~----~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL----GTG-----RWRDVKMRAFDNA----DHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHH----CSS-----CHHHHHHHHCTTC----TTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH----CCC-----CcHHHHHhhcccc----CCCCHHHHHHHHHHHHHhcc
Confidence 69999999999876542 223 5999998632111 35999999999999988543
No 25
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.84 E-value=0.0053 Score=45.10 Aligned_cols=55 Identities=15% Similarity=0.351 Sum_probs=41.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHH
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrY 88 (250)
......||.+|...|+.+.. .+..|. ..-|+.||..|. ||..||+++++.|++..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~----~~p~~t--~~RW~~IA~~lg---------Rt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMV----KFPGGT--PGRWEKIAHELG---------RSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHH----HSCTTC--TTHHHHHHHHHT---------SCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHH----HCCCCC--CcHHHHHHHHhC---------CCHHHHHHHHHHHHHhc
Confidence 34455899999999998864 233332 245999999982 79999999999998764
No 26
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.73 E-value=0.0006 Score=54.19 Aligned_cols=50 Identities=24% Similarity=0.510 Sum_probs=39.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHH
Q 025651 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (250)
Q Consensus 20 ~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKr 87 (250)
.....||.+|-..||+++... |+ .|..||..| +.||+.||++++.+|.++
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~------G~----~W~~Ia~~l--------~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL--------PGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHH------CS----CHHHHGGGS--------TTCCHHHHHHHHHTTTTC
T ss_pred cccccCCHHHHHHHHHHHHHH------Cc----CHHHHHHHC--------CCCCHHHHHHHHHHHHhc
Confidence 455689999999999987643 32 599999876 348999999999887543
No 27
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.68 E-value=0.0022 Score=50.52 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=43.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHH
Q 025651 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (250)
Q Consensus 17 ~~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKr 87 (250)
+.+.....||.+|+.+|++..... +.| .|..|+...-... ..||++||++|+.+|.+.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~----G~g-----~W~~I~~~~~~~f----~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKL----GTG-----RWRDVKLCAFEDA----DHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHH----CSS-----SHHHHHSSSSSST----TCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHh----CCC-----ChHHHHHHhcccc----CCCCHHHHHHHHHHHHhh
Confidence 346677799999999999876542 222 5999987542111 359999999999999885
No 28
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.63 E-value=0.0055 Score=45.46 Aligned_cols=55 Identities=22% Similarity=0.411 Sum_probs=39.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHH
Q 025651 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (250)
Q Consensus 17 ~~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LK 85 (250)
++-.....||.+|..+|..+.. .+..+. ...|+.||+.|- .||..||+.+.+.|.
T Consensus 3 ~~~~~~~~WT~eE~k~fe~ALa----~~~~~t--p~rWe~IA~~V~--------gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 3 SGSSGDKEWNEKELQKLHCAFA----SLPKHK--PGFWSEVAAAVG--------SRSPEECQRKYMENP 57 (73)
T ss_dssp CCCCSSSCCCHHHHHHHHHHHH----HSCSSS--SSHHHHHHHHTT--------TSCHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHH----HCCCCC--ccHHHHHHHHcC--------CCCHHHHHHHHHHHH
Confidence 3445567899999999998854 222221 236999999992 389999998777663
No 29
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.37 E-value=0.0014 Score=53.82 Aligned_cols=50 Identities=24% Similarity=0.479 Sum_probs=39.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHH
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKK 86 (250)
......||.+|-..||+++... |+ .|..||..| +.||+.||+|++.+|.+
T Consensus 107 ~~~~~~WT~eEd~~L~~~~~~~------g~----~W~~Ia~~l--------~gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 107 EVKKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL--------PGRTDNAIKNHWNSTMR 156 (159)
T ss_dssp TSCCSCCCHHHHHHHHHHHHHH------CS----CHHHHHTTS--------TTCCHHHHHHHHHTTTC
T ss_pred cccccCCChHHHHHHHHHHHHH------CC----CHHHHHHHC--------CCCCHHHHHHHHHHHHh
Confidence 3456789999999999997643 32 599999866 34899999999998754
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.35 E-value=0.005 Score=48.89 Aligned_cols=48 Identities=21% Similarity=0.463 Sum_probs=37.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHH
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~L 84 (250)
......||.+|...|+++.... |. .|..||..|. .||+.||+.|+.+.
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~------G~----~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQH------GS----DWKMIAATFP--------NRNARQCRDRWKNY 55 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHH------TT----CHHHHHHTCT--------TCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHh------CC----CHHHHHHHcC--------CCCHHHHHHHHhhh
Confidence 3445589999999999988653 32 6999998873 38999999998763
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.31 E-value=0.0057 Score=48.49 Aligned_cols=48 Identities=21% Similarity=0.473 Sum_probs=37.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHH
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~ 83 (250)
......||.+|...|+++.... | ...|..||..|. .||+.||++++.+
T Consensus 24 ~~~k~~Wt~eED~~L~~~v~~~------g---~~~W~~Ia~~l~--------~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 24 ELNKGPWTKEEDQRVIEHVQKY------G---PKRWSDIAKHLK--------GRIGKQCRERWHN 71 (128)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHT------C---SCCHHHHHHHSS--------SCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH------C---CCCHHHHHHHhc--------CCcHHHHHHHHHH
Confidence 3455689999999999887542 2 135999999883 3899999998875
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.25 E-value=0.0021 Score=51.37 Aligned_cols=49 Identities=22% Similarity=0.434 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHH
Q 025651 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (250)
Q Consensus 20 ~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKK 86 (250)
.....||.+|-..||+++... |+ .|..||..| +.||+.||++++.++.+
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~------G~----~W~~Ia~~l--------~gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKL------GS----KWSVIAKLI--------PGRTDNAIKNRWNSSIS 100 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHS------CS----CHHHHTTTS--------TTCCHHHHHHHHHHTTG
T ss_pred ccCCCCCHHHHHHHHHHHHHH------Cc----CHHHHHHHc--------CCCCHHHHHHHHHHHHH
Confidence 344589999999999987432 22 499999866 24899999999977544
No 33
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.11 E-value=0.0065 Score=46.37 Aligned_cols=45 Identities=20% Similarity=0.479 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHH
Q 025651 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (250)
Q Consensus 22 ~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~ 83 (250)
...||.+|...|+++.... |. ..|..||..|. .||+.||+.++.+
T Consensus 4 k~~WT~eED~~L~~~v~~~------g~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKY------GP---KRWSVIAKHLK--------GRIGKQCRERWHN 48 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHH------CT---TCHHHHHTTST--------TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh------CC---CcHHHHhhhhc--------CCCHHHHHHHHHh
Confidence 3479999999999887532 21 35999998873 3899999998765
No 34
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.10 E-value=0.0084 Score=46.20 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHH
Q 025651 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (250)
Q Consensus 23 ~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~ 83 (250)
..||.+|...|+++.... | ...|..||..|. .||+.||+.++.+
T Consensus 2 ~~Wt~eED~~L~~~v~~~------g---~~~W~~Ia~~~~--------~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRY------G---AKDWIRISQLMI--------TRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHH------C---SSCHHHHHHHTT--------TSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH------C---CCCHHHHhhhcC--------CCCHHHHHHHHHH
Confidence 369999999999887542 2 136999999883 3899999998765
No 35
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.84 E-value=0.014 Score=41.08 Aligned_cols=48 Identities=10% Similarity=0.177 Sum_probs=37.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHH
Q 025651 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (250)
Q Consensus 18 ~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~ 83 (250)
.+.....||++|-..|++++... | +.|..||..| +.||..||....-.
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~------g----k~w~~Ia~~l--------~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQH------P----KNFGLIASYL--------ERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHS------T----TCHHHHHHHC--------TTSCHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHh------C----CCHHHHHHHc--------CCCCHHHHHHHHHH
Confidence 45667899999999999988753 2 4799999777 34899999865433
No 36
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.81 E-value=0.022 Score=41.08 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=42.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHH
Q 025651 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (250)
Q Consensus 17 ~~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKr 87 (250)
++....-.||++|+.+||+-.... |+ .|..|+..-.- . ..||.+.-++|+.+|.|.
T Consensus 3 ~~~~~r~~WT~EE~~~L~~gV~k~------G~----~W~~I~~~y~f-~----~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 3 SGSSGRKDFTKEEVNYLFHGVKTM------GN----HWNSILWSFPF-Q----KGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCCCCSSSCCHHHHHHHHHHHHHH------CS----CHHHHHHHSCC-C----TTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH------hH----hHHHHHHhCCC-c----cCcccchHHHHHHHHHhc
Confidence 345567799999999999987654 32 69999975432 1 359999999999999864
No 37
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.58 E-value=0.015 Score=47.61 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHH
Q 025651 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (250)
Q Consensus 20 ~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~L 84 (250)
.....||.+|...|+++.... |. ..|..||..|. .||+.||++++.++
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~------g~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKY------GP---KRWSVIAKHLK--------GRIGKQCRERWHNH 103 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH------CS---CCHHHHHHTST--------TCCHHHHHHHHHHT
T ss_pred cCCCCCChHHHHHHHHHHHHh------Cc---ccHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 445689999999999887542 21 35999998873 38999999988663
No 38
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=95.54 E-value=0.02 Score=50.95 Aligned_cols=52 Identities=15% Similarity=0.371 Sum_probs=39.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHH
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrY 88 (250)
......||++|...++++.... | ++|..||..|- .||..||++-+-+-|++|
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kY------G----KDW~~IAk~Vg--------TKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKY------G----RDFQAISDVIG--------NKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHH------S----SCHHHHHHHHS--------SCCHHHHHHHHHHTTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHH------C----cCHHHHHHHcC--------CCCHHHHHHHHHHHHHHh
Confidence 3456799999999998876542 2 36999999982 389999999776555443
No 39
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=95.35 E-value=0.013 Score=52.41 Aligned_cols=53 Identities=11% Similarity=0.236 Sum_probs=39.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCC--hhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHH
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLR--QKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR--~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LK 85 (250)
.-....||.+|-..||++.... |+.| ++.|.+||..| +.||+.|||++|.++-
T Consensus 5 ~~~k~~FT~EED~~Ile~v~k~------Gn~r~ghk~W~~IAk~L--------pGRT~nsIRnRw~~~L 59 (246)
T 1ign_A 5 SHNKASFTDEEDEFILDVVRKN------PTRRTTHTLYDEISHYV--------PNHTGNSIRHRFRVYL 59 (246)
T ss_dssp ---CCCCCHHHHHHHHHHHHTS------GGGTTCSHHHHHHTTTS--------TTSCHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh------CcCccccccHHHHHHHc--------CCCCHHHHHHHHHHHH
Confidence 3445689999999999987762 2222 35699999866 3489999999999843
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=94.52 E-value=0.013 Score=46.70 Aligned_cols=44 Identities=16% Similarity=0.373 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHH
Q 025651 24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (250)
Q Consensus 24 ~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~L 84 (250)
.||.+|...|+++.... | ...|..||..|. .||+.||+.++.+.
T Consensus 4 ~Wt~eED~~L~~~v~~~------g---~~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 4 PFTEAEDDLIREYVKEN------G---PQNWPRITSFLP--------NRSPKQCRERWFNH 47 (131)
T ss_dssp SCCHHHHHHHHHHHHHH------C---SCCGGGGTTSCT--------TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh------C---cCCHHHHHHHHC--------CCCHHHHHHHHhhc
Confidence 69999999999876543 2 125999998772 38999999988653
No 41
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=93.51 E-value=0.27 Score=38.09 Aligned_cols=63 Identities=13% Similarity=0.333 Sum_probs=50.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q 025651 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP 95 (250)
Q Consensus 18 ~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~~~ 95 (250)
.+..-..||.++-..+|.++..+ |. ..++|..||..+.. ||..|.++||..|-+-|.+.....
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~------G~-s~~tFa~iA~~L~N--------ks~nqV~~RFq~Lm~Lf~~~~~~~ 91 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQ------GA-QPHTFSVISQQLGN--------KTPVEVSHRFRELMQLFHTACESG 91 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHT------TS-CTTTHHHHHHHHSS--------CCHHHHHHHHHHHHHHHHHCSSSC
T ss_pred CCCEEEEeccccCHHHHHHHHhc------CC-ChhHHHHHHHHHcc--------CCHHHHHHHHHHHHHHHHHHhccC
Confidence 46777899999999999887653 31 24579999999953 799999999999999999876543
No 42
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=91.60 E-value=0.25 Score=48.01 Aligned_cols=44 Identities=18% Similarity=0.364 Sum_probs=34.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 025651 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRI 81 (250)
Q Consensus 20 ~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKi 81 (250)
.....||++|..+++++.... | ++|..||+.|- .||..||++=+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~y------G----kdw~~IA~~Vg--------TKT~~Qvk~fy 421 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKY------G----RDFQAISDVIG--------NKSVVQVKNFF 421 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH------T----TCHHHHHHHHS--------SCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHH------C----cCHHHHHHHhC--------CCCHHHHHHHH
Confidence 456799999999999876532 2 37999999993 38999999843
No 43
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.16 E-value=0.61 Score=32.84 Aligned_cols=47 Identities=17% Similarity=0.445 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHH-HHcccCCCCCCCCHHHHHH
Q 025651 15 ATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAES-VNSRENGVKPKKTDIQCKN 79 (250)
Q Consensus 15 ~~~~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~-v~~r~~g~k~~rT~~QCrn 79 (250)
+.+++.....||++|...+++++.. . .++|..|+.. | ..||..||..
T Consensus 2 ~~~p~~~~~~WT~eE~~~Fe~~l~~----y------GKdf~~I~~~~v--------~~Kt~~~~v~ 49 (63)
T 2yqk_A 2 SSGSSGIEKCWTEDEVKRFVKGLRQ----Y------GKNFFRIRKELL--------PNKETGELIT 49 (63)
T ss_dssp CCCCCCCCCSCCHHHHHHHHHHHHH----T------CSCHHHHHHHSC--------TTSCHHHHHH
T ss_pred CCCCCcCCCCcCHHHHHHHHHHHHH----h------CccHHHHHHHHc--------CCCcHHHHHH
Confidence 4556777889999999888776532 1 2368899885 5 3489999963
No 44
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=87.54 E-value=0.8 Score=32.03 Aligned_cols=53 Identities=11% Similarity=0.153 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHH-HHHcccCCCCCCCCHHHHHHHHHH
Q 025651 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAE-SVNSRENGVKPKKTDIQCKNRIDT 83 (250)
Q Consensus 22 ~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~-~v~~r~~g~k~~rT~~QCrnKid~ 83 (250)
...+|.++-..||+--.+. .....+-..+++|+++|+ .+ +..|+.+||+++.+
T Consensus 2 R~~FT~edD~~L~~~v~~~-~~~~~~~~Gn~iwk~la~~~~--------~~HtwqSwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKEN-ARSPSSVTGNALWKAMEKSSL--------TQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHT-CCSTTTTTSSHHHHHHHHSCS--------SSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh-ccccCCCccHHHHHHHHHhHC--------CCCCHHHHHHHHHH
Confidence 3578999988888644322 111112223689999998 44 45799999998753
No 45
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=84.83 E-value=2.1 Score=32.81 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q 025651 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP 95 (250)
Q Consensus 23 ~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~~~ 95 (250)
..||.+||..|++....-.+ .|--|++...-.. ...||.++-|+|+-.+-++..+.+..+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----------RW~vI~DRy~~~~---~~~Rt~EdLK~RyY~v~~~l~~~r~~~ 90 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----------RFVVIHDRYDHQQ---FKKRSVEDLKERYYHICAKLANVRAVP 90 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----------CHHHHHHHSCTTT---SCCCCHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CeeeehhhhccCC---CCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 79999999999998765332 3777888875211 135999999999999999888877543
No 46
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=81.48 E-value=0.34 Score=35.64 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=45.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 025651 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEK 92 (250)
Q Consensus 19 ~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK 92 (250)
|..-..||.++-..+|..+.++ |. ..+.|..||..++ ||+.|..+||..|-+-|.+-|
T Consensus 11 ge~vvlWTReeDR~IL~~cq~~------G~-s~~tfa~iA~~Ln---------ks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 11 GEIIILWTRNDDRVILLECQKR------GP-SSKTFAYLAAKLD---------KNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 4566789999999998877653 32 1257888998873 689999999999999998755
No 47
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=72.48 E-value=4.9 Score=28.73 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=31.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHH-HHcccCCCCCCCCHHHHHH
Q 025651 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAES-VNSRENGVKPKKTDIQCKN 79 (250)
Q Consensus 18 ~~~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~-v~~r~~g~k~~rT~~QCrn 79 (250)
.+...+.||++|...+.+++.. . .++|..|+.. | ..||..||-.
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~----y------GKdf~~I~~~~v--------~~Kt~~~~v~ 48 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEK----Y------GKDFNDIRQDFL--------PWKSLTSIIE 48 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHH----T------CSCHHHHHHTTC--------SSSCHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHH----h------CccHHHHHHHHc--------CCCCHHHHHH
Confidence 4577789999999888776532 1 2358889873 5 3489999974
No 48
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=72.20 E-value=15 Score=27.68 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 025651 186 RAILKFGEIYERIESA------KQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKS 238 (250)
Q Consensus 186 ~ai~~f~e~yer~E~~------K~~~~~elEk~Rmef~kdlE~~R~~~~~~~Q~ei~~~ 238 (250)
.+|+.-|..|-+.|.| ++++...|.+.|.....||+.+..+ |.+-|-+|.+.
T Consensus 13 gsir~aggaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~e-i~~le~~i~rh 70 (84)
T 1gmj_A 13 GAVRDAGGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKE-IERLQKEIERH 70 (84)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CcccccCCCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3455556666666655 4666777888887666666665554 44555555544
No 49
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=69.91 E-value=3.8 Score=31.00 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHH
Q 025651 21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKN 79 (250)
Q Consensus 21 r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrn 79 (250)
..+.||++|...+.+++... .++|..||..| ..||..||-.
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~----------gK~F~~Ia~~l--------~~Kt~~~cV~ 82 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQH----------PKNFGLIASFL--------ERKTVAECVL 82 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHS----------TTCHHHHHHTC--------TTCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHc----------CCCHHHHHHHc--------CCCCHHHHHH
Confidence 35689999988887776532 35788898766 3489999963
No 50
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=55.26 E-value=1.9 Score=31.95 Aligned_cols=47 Identities=23% Similarity=0.313 Sum_probs=30.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 025651 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNR 80 (250)
Q Consensus 20 ~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnK 80 (250)
+....||.++-.+|-.+-.-. ..+. ..-|+.||+.| +.||..+|+..
T Consensus 18 ~ss~~WT~eE~K~FE~ALa~y----p~~t--pdRWekIA~~V--------pGKT~eEVk~h 64 (74)
T 4eef_G 18 GSGRPWKFSENIAFEIALSFT----NKDT--PDRWKKVAQYV--------KGRTPEEVKKH 64 (74)
T ss_dssp ----CCCTTHHHHHHHHTSSS----CSSC--CSSSTTTGGGS--------CSSCHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHC----CCCC--CcHHHHHHHHc--------CCCCHHHHHHH
Confidence 345589999999987774321 2221 23499999998 23899999753
No 51
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=48.73 E-value=42 Score=25.59 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhC
Q 025651 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKA 93 (250)
Q Consensus 23 ~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~ 93 (250)
+.||.+||..|++.-.+-.+ .|--|++...-.. ...||..+-|.|.=.+-++.-+.+.
T Consensus 31 ~~WT~eETd~LfdLc~~fdl----------Rw~vI~DRy~~~~---~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL----------RFVVIHDRYDHQQ---FKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----------CHHHHHHHCCTTT---SCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHcCC----------CeEEEeeccccCC---CCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 58999999999998665322 3666777764211 1358888877777666666555544
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.42 E-value=2e+02 Score=26.88 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 025651 200 SAKQKQMMELEKERLEFIKDVECERMNMF 228 (250)
Q Consensus 200 ~~K~~~~~elEk~Rmef~kdlE~~R~~~~ 228 (250)
+.++++...+|+.+.+..+.++.++.+++
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 44556666666777777787888777766
No 53
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=30.78 E-value=1.9e+02 Score=22.62 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 025651 180 ACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQK 237 (250)
Q Consensus 180 ~~~~la~ai~~f~e~yer~E~~K~~~~~elEk~Rmef~kdlE~~R~~~~~~~Q~ei~~ 237 (250)
.+..|..-+...-|.+.. ||.+..+|...-.. ++-++.++++| ++|++|=+
T Consensus 25 ei~~L~~~L~~AEeaL~~----Kq~~idelk~ei~q--~~~~lE~I~vL-kaQv~IY~ 75 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVA----KQELIDKLKEEAEQ--HKIVMETVPVL-KAQADIYK 75 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH--HHHHHTHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHH
Confidence 345555555555555544 55555555543322 44555677765 78887744
No 54
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.68 E-value=1.9e+02 Score=21.47 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025651 193 EIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQL 233 (250)
Q Consensus 193 e~yer~E~~K~~~~~elEk~Rmef~kdlE~~R~~~~~~~Q~ 233 (250)
|+|+..|..=++.+-.+.-.+|| ..||..+-..+-.+.|.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmE-ieELKekN~~L~~e~~e 45 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQME-IEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 78889988666666668888888 34454454444444433
No 55
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=26.60 E-value=1e+02 Score=24.34 Aligned_cols=12 Identities=42% Similarity=0.340 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 025651 199 ESAKQKQMMELE 210 (250)
Q Consensus 199 E~~K~~~~~elE 210 (250)
|..|++--.|.|
T Consensus 56 E~kklqLkse~e 67 (115)
T 3vem_A 56 EEKKSILKAELE 67 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444554444333
No 56
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=21.78 E-value=1.8e+02 Score=21.62 Aligned_cols=65 Identities=23% Similarity=0.381 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHhh------HHHhh-hcCCC--ChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 025651 21 REDCWSEGATGTLIEAWGD------RYVRL-NRGHL--RQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIE 91 (250)
Q Consensus 21 r~~~WSe~ET~~LLeawge------r~~ql-~rg~l--R~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKke 91 (250)
.+.-|++.--.+|+++-.- +.+.+ .+|.+ ||. -||+-+..+++ ..+|..||-..|..||+....+
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNe---lIs~yI~~~tG---k~RtrKQVSShiQvlk~~~~~~ 78 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNE---LIARYIKLRTG---KTRTRKQVSSHIQVLARRKSRD 78 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHH---HHHHHHHHHHS---CCCCSHHHHHHHHHHHHHHTTC
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhH---HHHHHHHHHHc---ccCCccchhHHHHHHHHHHhhh
Confidence 4568998888888886543 11212 23432 344 48888887664 4699999999999999987654
No 57
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=21.26 E-value=1.9e+02 Score=25.69 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=28.8
Q ss_pred CCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 025651 47 GHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIE 91 (250)
Q Consensus 47 g~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKke 91 (250)
|.+.-..|++||+.. +.+|+..-|+|+.++-+.|-..
T Consensus 167 gp~~~~~fk~ia~~~--------P~HT~~SWRdRyrKfl~~~gi~ 203 (246)
T 1ign_A 167 GPIAREFFKHFAEEH--------AAHTENAWRDRFRKFLLAYGID 203 (246)
T ss_dssp CCCCTTHHHHHHHHT--------TTSCHHHHHHHHHHTHHHHCHH
T ss_pred CcchHHHHHHHHHHC--------CCCChhhHHHHHHHHHhhcChH
Confidence 444445899999987 4579999999999988888444
Done!