BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025655
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core
pdb|1W63|N Chain N, Ap1 Clathrin Adaptor Core
pdb|1W63|O Chain O, Ap1 Clathrin Adaptor Core
pdb|1W63|P Chain P, Ap1 Clathrin Adaptor Core
pdb|1W63|R Chain R, Ap1 Clathrin Adaptor Core
pdb|1W63|V Chain V, Ap1 Clathrin Adaptor Core
Length = 423
Score = 337 bits (864), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 149/242 (61%), Positives = 201/242 (83%), Gaps = 2/242 (0%)
Query: 1 MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTE 60
+ S++N + + FL++VV VF YF+ELEEES+RDNFV++YELLDE+MDFGYPQ T+
Sbjct: 68 VATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTD 127
Query: 61 ANILSEFIKTDAYRMEV-TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNG 119
+ IL EFI + +++E RPP VTNAVSWRSEGI+Y+KNEVFLDV+E VN+LV++NG
Sbjct: 128 SKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANG 187
Query: 120 QIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLAR 179
++RS++VG++KMR +LSGMPE +LGLND++L + GR K K+++L+D+KFHQCVRL+R
Sbjct: 188 NVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVELEDVKFHQCVRLSR 246
Query: 180 FENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERRC 239
FENDRTISFIPPDG F+LM+YRLNT VKPLIW+E+ +E+HS SR+E +VKA+SQFK R
Sbjct: 247 FENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRST 306
Query: 240 SD 241
++
Sbjct: 307 AN 308
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EN2|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 100/152 (65%), Positives = 134/152 (88%), Gaps = 1/152 (0%)
Query: 90 SWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDR 149
SWRSEGI+Y+KNEVFLDV+E VN+LV++NG ++RS++VG++KMR +LSGMPE +LGLND+
Sbjct: 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDK 60
Query: 150 ILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPL 209
+L + GR K K+++L+D+KFHQCVRL+RFENDRTISFIPPDG F+LM+YRLNT VKPL
Sbjct: 61 VLFDNTGRG-KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPL 119
Query: 210 IWVEAQVERHSRSRVEILVKARSQFKERRCSD 241
IW+E+ +E+HS SR+E +VKA+SQFK R ++
Sbjct: 120 IWIESVIEKHSHSRIEYMVKAKSQFKRRSTAN 151
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Non-Canonical Internalization Peptide
Vedyeqglsg
pdb|2VGL|M Chain M, Ap2 Clathrin Adaptor Core
pdb|2JKR|M Chain M, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|U Chain U, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|M Chain M, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|U Chain U, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 435
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 109/244 (44%), Positives = 163/244 (66%), Gaps = 12/244 (4%)
Query: 4 SRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANI 63
++QN NAA + FL+++ DV YF ++ EE++++NFV++YELLDE++DFGYPQ +E
Sbjct: 69 TKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGA 128
Query: 64 LSEFI-----KTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSN 118
L FI K+ E + VT + WR EGI+Y++NE+FLDV+E VN+L++
Sbjct: 129 LKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQ 188
Query: 119 GQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRST------KGK-AIDLDDIKF 171
GQ++ + V G + M++YLSGMPECK G+ND+I++E QG+ T GK +I +DD F
Sbjct: 189 GQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTF 248
Query: 172 HQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKAR 231
HQCVRL++F+++R+ISFIPPDG F+LM YR + V V R+++E+ V +
Sbjct: 249 HQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIK 308
Query: 232 SQFK 235
S FK
Sbjct: 309 SNFK 312
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EMZ|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 223 bits (569), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 97/152 (63%), Positives = 130/152 (85%), Gaps = 1/152 (0%)
Query: 90 SWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDR 149
SWRSEGI+Y+KNEVFLDV+E VN+LV++NG ++RS++VG++K R +LSG PE +LGLND+
Sbjct: 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKXRVFLSGXPELRLGLNDK 60
Query: 150 ILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPL 209
+L + GR K K+++L+D+KFHQCVRL+RFENDRTISFIPPDG F+L +YRLNT VKPL
Sbjct: 61 VLFDNTGRG-KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELXSYRLNTHVKPL 119
Query: 210 IWVEAQVERHSRSRVEILVKARSQFKERRCSD 241
IW+E+ +E+HS SR+E VKA+SQFK R ++
Sbjct: 120 IWIESVIEKHSHSRIEYXVKAKSQFKRRSTAN 151
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 446
Score = 221 bits (562), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 163/257 (63%), Gaps = 23/257 (8%)
Query: 2 TASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEA 61
++QN NAA + FL+++ DV YF ++ EE++++NFV++YELLDE++DFGYPQ +E
Sbjct: 67 AVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSET 126
Query: 62 NILSEFI-----KTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVN 116
L FI K+ E + VT + WR EGI+Y++NE+FLDV+E VN+L++
Sbjct: 127 GALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMS 186
Query: 117 SNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTK---------------- 160
GQ++ + V G + M++YLSGMPECK G+ND+I++E QG+ T
Sbjct: 187 PQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSMEQKLISEED 246
Query: 161 -GK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVER 218
GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR + V V
Sbjct: 247 LGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVRE 306
Query: 219 HSRSRVEILVKARSQFK 235
R+++E+ V +S FK
Sbjct: 307 VGRTKLEVKVVIKSNFK 323
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor,
Complexed With Egfr Internalization Peptide Fyralm At
2.5 A Resolution
Length = 314
Score = 160 bits (404), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 120/191 (62%), Gaps = 12/191 (6%)
Query: 57 QYTEANILSEFI-----KTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHV 111
Q +E L FI K+ E + VT + WR EGI+Y++NE+FLDV+E V
Sbjct: 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESV 60
Query: 112 NILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRST------KGK-AI 164
N+L++ GQ++ + V G + M++YLSGMPECK G+ND+I++E QG+ T GK +I
Sbjct: 61 NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSI 120
Query: 165 DLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRV 224
+DD FHQCVRL++F+++R+ISFIPPDG F+LM YR + V V R+++
Sbjct: 121 AIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKL 180
Query: 225 EILVKARSQFK 235
E+ V +S FK
Sbjct: 181 EVKVVIKSNFK 191
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Egfr Internalization Peptide Fyralm
Length = 321
Score = 160 bits (404), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 120/191 (62%), Gaps = 12/191 (6%)
Query: 57 QYTEANILSEFI-----KTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHV 111
Q +E L FI K+ E + VT + WR EGI+Y++NE+FLDV+E V
Sbjct: 8 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESV 67
Query: 112 NILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRST------KGK-AI 164
N+L++ GQ++ + V G + M++YLSGMPECK G+ND+I++E QG+ T GK +I
Sbjct: 68 NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSI 127
Query: 165 DLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRV 224
+DD FHQCVRL++F+++R+ISFIPPDG F+LM YR + V V R+++
Sbjct: 128 AIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKL 187
Query: 225 EILVKARSQFK 235
E+ V +S FK
Sbjct: 188 EVKVVIKSNFK 198
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Gabaa Receptor-Gamma2 Subunit-Derived
Internalization Peptide Deeygyecl
pdb|3H85|A Chain A, Molecular Basis For The Association Of Pipki Gamma-P90
With The Clathrin Adaptor Ap-2
Length = 299
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 109/161 (67%), Gaps = 7/161 (4%)
Query: 82 PMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPE 141
P + WR EGI+Y++NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPE
Sbjct: 16 PRGSHMQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPE 75
Query: 142 CKLGLNDRILLEAQGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGS 194
CK G+ND+I++E QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG
Sbjct: 76 CKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGE 135
Query: 195 FDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFK 235
F+LM YR + V V R+++E+ V +S FK
Sbjct: 136 FELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFK 176
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Tgn38 Internalization Peptide Dyqrln
pdb|1HES|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With P-Selectin Internalization Peptide
Shlgtygvftnaa
Length = 285
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 108/154 (70%), Gaps = 7/154 (4%)
Query: 89 VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLND 148
+ WR EGI+Y++NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPECK G+ND
Sbjct: 9 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 68
Query: 149 RILLEAQGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYR 201
+I++E QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR
Sbjct: 69 KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 128
Query: 202 LNTQVKPLIWVEAQVERHSRSRVEILVKARSQFK 235
+ V V R+++E+ V +S FK
Sbjct: 129 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFK 162
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Ctla-4 Internalization Peptide
Ttgvyvkmppt
Length = 288
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 105/149 (70%), Gaps = 7/149 (4%)
Query: 94 EGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLE 153
EGI+Y++NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPECK G+ND+I++E
Sbjct: 17 EGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIE 76
Query: 154 AQGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQV 206
QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR +
Sbjct: 77 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDI 136
Query: 207 KPLIWVEAQVERHSRSRVEILVKARSQFK 235
V V R+++E+ V +S FK
Sbjct: 137 ILPFRVIPLVREVGRTKLEVKVVIKSNFK 165
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|B Chain B, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|C Chain C, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|D Chain D, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|E Chain E, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|F Chain F, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
Length = 385
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 100/148 (67%), Gaps = 7/148 (4%)
Query: 95 GIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEA 154
G +NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPECK G+ND+I++E
Sbjct: 115 GSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEK 174
Query: 155 QGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVK 207
QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR +
Sbjct: 175 QGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDII 234
Query: 208 PLIWVEAQVERHSRSRVEILVKARSQFK 235
V V R+++E+ V +S FK
Sbjct: 235 LPFRVIPLVREVGRTKLEVKVVIKSNFK 262
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a
Subunit C- Terminal Domain, In Complex With A Sorting
Peptide From Tgn38
Length = 261
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 90/165 (54%), Gaps = 25/165 (15%)
Query: 89 VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLG-LN 147
+ WR G++Y NE + DVVE ++ +++ +G + +++ G + LSGMP+ L +N
Sbjct: 8 IPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMN 67
Query: 148 DRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQ-- 205
R+L DD+ FH C+R R+E++R +SFIPPDG+F L++YR+++Q
Sbjct: 68 PRLL---------------DDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNL 112
Query: 206 VKPLIWVEAQV---ERHSRSRVEILVKARSQFKERRCSDINGICI 247
V ++V+ + E S R +I + K+ I GI +
Sbjct: 113 VAIPVYVKHNISFKENSSCGRFDITIGP----KQNMGKTIEGITV 153
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4
Su Terminal Domain, In Complex With A Sorting Peptide
From The Precursor Protein (App)
Length = 301
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 13/170 (7%)
Query: 66 EFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSD 125
EF ++ RP +S RS+ Q +KNEVFLDVVE +++L+ SNG +++ D
Sbjct: 6 EFQQSKVAPSSAASRP------VLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVD 57
Query: 126 VVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRT 185
V G ++++++L E ++GL + + G I +D++ FH V L FE+ R
Sbjct: 58 VQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRGYGPGIRVDEVSFHSSVNLDEFESHRI 117
Query: 186 ISFIPPDGSFDLMTYRLNTQV-KPL---IWVEAQVERHSRSRVEILVKAR 231
+ PP G +M Y+L+ + PL ++ Q +R S R+++ +K R
Sbjct: 118 LRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGS-GRLQVYLKLR 166
>pdb|2H31|A Chain A, Crystal Structure Of Human Paics, A Bifunctional
Carboxylase And Synthetase In Purine Biosynthesis
Length = 425
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 21 VDVFKHY----FEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRME 76
VD+ H FE LE+ L N L+D ++FG T+ +L++ I D++R+
Sbjct: 162 VDIXSHATQAIFEILEKSWLPQNCT----LVDXKIEFGVDVTTKEIVLADVIDNDSWRLW 217
Query: 77 VT-----QRPPMAVTNAVSWRSEGIQY-KKNEVFLDVVEHVNILVNSNGQ 120
+ Q+ + + EG+Q KKN F V E V +L+ S Q
Sbjct: 218 PSGDRSQQKDKQSYRDLKEVTPEGLQXVKKN--FEWVAERVELLLKSESQ 265
>pdb|1WQL|B Chain B, Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluorescens
Ip01
Length = 186
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 163 AIDLDDIKFHQCVRLARFENDRTISFIPPDG------SFDLMTYRLNTQVKPLIWVEAQV 216
A+ DI++ +R ++ + ++PP G +++ M R+ +V L W E
Sbjct: 46 ALLTQDIQYWMPIRTTHTSRNKAMEYVPPGGNAHFDETYESMRARIRARVSGLNWTE--- 102
Query: 217 ERHSRSR 223
+ SRSR
Sbjct: 103 DPPSRSR 109
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast:
Pgk P72
Length = 416
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 27/69 (39%)
Query: 21 VDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQR 80
V F+H L + + D F + M+ F PQ +L + +K +E R
Sbjct: 74 VQKFRHELSSLADVYINDAFGTAHRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTR 133
Query: 81 PPMAVTNAV 89
P +A+
Sbjct: 134 PFLAILGGA 142
>pdb|3PGK|A Chain A, The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm
Resolution
Length = 416
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 27/69 (39%)
Query: 21 VDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQR 80
V F+H L + + D F + M+ F PQ +L + +K +E R
Sbjct: 145 VQKFRHELSSLADVYINDAFGTAHRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTR 204
Query: 81 PPMAVTNAV 89
P +A+
Sbjct: 205 PFLAILGGA 213
>pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q
Length = 415
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 27/69 (39%)
Query: 21 VDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQR 80
V F+H L + + D F + M+ F PQ +L + +K +E R
Sbjct: 144 VQKFRHELSSLADVYINDAFGTAHRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTR 203
Query: 81 PPMAVTNAV 89
P +A+
Sbjct: 204 PFLAILGGA 212
>pdb|2VGL|S Chain S, Ap2 Clathrin Adaptor Core
pdb|2JKR|I Chain I, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|S Chain S, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|I Chain I, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|S Chain S, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2XA7|S Chain S, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 142
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 7 NCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFG 54
N N + L +H V+V YF + E L NF VY ++DEM G
Sbjct: 74 NDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,925,126
Number of Sequences: 62578
Number of extensions: 269233
Number of successful extensions: 638
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 21
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)