Query 025655
Match_columns 250
No_of_seqs 124 out of 828
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:46:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 1.3E-63 4.3E-68 468.8 27.7 250 1-250 66-328 (435)
2 1w63_M Adaptor-related protein 100.0 7.7E-64 2.6E-68 468.8 25.5 249 1-250 68-318 (423)
3 1i31_A Clathrin coat assembly 100.0 1.7E-49 5.9E-54 358.5 20.5 194 57-250 1-207 (314)
4 4en2_M AP-1 complex subunit MU 100.0 2.3E-44 8E-49 317.9 18.0 160 90-250 1-161 (266)
5 3l81_A AP-4 complex subunit MU 100.0 9.6E-44 3.3E-48 318.9 18.4 168 80-250 13-186 (301)
6 3ml6_A Chimeric complex betwee 100.0 3.3E-43 1.1E-47 324.9 21.1 165 86-250 102-278 (385)
7 1w63_Q Adapter-related protein 99.7 1.3E-18 4.4E-23 142.1 5.9 74 1-74 68-141 (158)
8 2vgl_S AP-2 complex subunit si 99.7 9.4E-18 3.2E-22 134.5 6.6 72 1-72 68-140 (142)
9 3tjz_C Coatomer subunit zeta-1 99.7 1.2E-16 4.2E-21 129.7 7.3 72 1-72 78-150 (153)
10 3g9h_A Suppressor of yeast pro 96.4 0.2 6.8E-06 44.7 16.4 132 99-249 66-212 (328)
11 3vjz_A DMP19, putative unchara 43.2 4.5 0.00015 32.4 -0.3 53 7-59 10-68 (166)
12 2wl8_A Peroxisomal biogenesis 38.4 60 0.0021 24.6 5.4 22 36-57 87-108 (126)
13 2fcg_F Cationic, antibacterial 32.2 24 0.00083 19.2 1.6 16 17-32 5-20 (26)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=1.3e-63 Score=468.83 Aligned_cols=250 Identities=42% Similarity=0.788 Sum_probs=210.1
Q ss_pred CeeecCCCCHHHHHHHHHHHHHHHHHhhcccCHHHHHhhHHHHHHHHHHHhcCCeeeecChhhhhhhhccccccccc---
Q 025655 1 MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEV--- 77 (250)
Q Consensus 1 v~~t~~~~n~~~~~e~L~~l~~~l~~y~g~l~e~~i~~n~~~iyelLdE~id~G~p~~t~~~~Lk~~i~~~~~~~~~--- 77 (250)
||+++.|.|+++++||||+|+++|.+|||+++|+.|++||+++|++||||+|+||||+|+++.|+.++.+++++.+.
T Consensus 66 v~~~~~~~n~l~~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~ 145 (435)
T 2vgl_M 66 AAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTK 145 (435)
T ss_dssp EEEESSCCCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC----
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccccccccccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred --ccCCCCCccccccccccCcccccceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEEeCCCCeEEEEeccchhhhhc
Q 025655 78 --TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQ 155 (250)
Q Consensus 78 --~~~~~~~~~~~~~wR~~~~~~~~nEi~vdV~E~i~~~~~~~G~i~~~~i~G~I~~~s~LsG~P~~~l~ln~~~~~~~~ 155 (250)
...++++++++++||+.|++|++|||||||+|+++++++++|.+++++|.|+|+|+++|+|||+|+|+||++..++.+
T Consensus 146 ~~~~~~~~~~~~~i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~ 225 (435)
T 2vgl_M 146 EEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQ 225 (435)
T ss_dssp -------------CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC---
T ss_pred ccccccccccccccccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccc
Confidence 123455667789999999999999999999999999999999999999999999999999999999999998665433
Q ss_pred cCC-----C--CCcceeccccccccccccccccCCceeEecCCCCceEEEEEEecCCCcCcEEEEEEEEECcceEEEEEE
Q 025655 156 GRS-----T--KGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILV 228 (250)
Q Consensus 156 ~~~-----~--~~~~~~l~d~~fH~cV~~~~~~~~r~i~F~PPdg~F~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~e~~v 228 (250)
++. + ...++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+..||+.+.||++..+++++||++
T Consensus 226 ~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l 305 (435)
T 2vgl_M 226 GKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKV 305 (435)
T ss_dssp --------------CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEE
T ss_pred cccccccccccccCceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEE
Confidence 211 0 125678999999999999999999999999999999999999988775555679999977667999999
Q ss_pred EEeecCCccccc-ceeEEeecCC
Q 025655 229 KARSQFKERRCS-DINGICIICT 250 (250)
Q Consensus 229 ~l~~~~~~~~~a-~v~i~ip~p~ 250 (250)
+++++|+++..+ ++.|+||+|.
T Consensus 306 ~~~~~~~~~~~~~~V~I~IP~P~ 328 (435)
T 2vgl_M 306 VIKSNFKPSLLAQKIEVRIPTPL 328 (435)
T ss_dssp EEEECSCTTSEEEEEEEEEECCS
T ss_pred EEeCCCCCCceeeEEEEEEECCC
Confidence 999999887644 9999999984
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=7.7e-64 Score=468.76 Aligned_cols=249 Identities=60% Similarity=1.064 Sum_probs=212.5
Q ss_pred CeeecCCCCHHHHHHHHHHHHHHHHHhhcccCHHHHHhhHHHHHHHHHHHhcCCeeeecChhhhhhhhccccccccccc-
Q 025655 1 MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQ- 79 (250)
Q Consensus 1 v~~t~~~~n~~~~~e~L~~l~~~l~~y~g~l~e~~i~~n~~~iyelLdE~id~G~p~~t~~~~Lk~~i~~~~~~~~~~~- 79 (250)
||+++.|.|+++++||||+|+++|.+|||.++|+.|++||+++|++||||+|+||||+|++++|+++|.++++....++
T Consensus 68 v~~~~~~~n~l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~ 147 (423)
T 1w63_M 68 VATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAP 147 (423)
T ss_dssp EEEESSCCCTHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCCCC--
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCcccccccc
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999998743222
Q ss_pred CCCCCccccccccccCcccccceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEEeCCCCeEEEEeccchhhhhccCCC
Q 025655 80 RPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRST 159 (250)
Q Consensus 80 ~~~~~~~~~~~wR~~~~~~~~nEi~vdV~E~i~~~~~~~G~i~~~~i~G~I~~~s~LsG~P~~~l~ln~~~~~~~~~~~~ 159 (250)
.++++.+++++||+.|++|++|||||||+|+++++++++|.+++++|.|+|+|+++|+|||+|+|+||++..++..++ +
T Consensus 148 ~~~~~~~~~i~wr~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~-~ 226 (423)
T 1w63_M 148 RPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-G 226 (423)
T ss_dssp ---------CCSSCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC---------
T ss_pred CCcccccCCCCccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccc-c
Confidence 345566778999999999999999999999999999999999999999999999999999999999999876554332 2
Q ss_pred CCcceeccccccccccccccccCCceeEecCCCCceEEEEEEecCCCcCcEEEEEEEEECcceEEEEEEEEeecCCcccc
Q 025655 160 KGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERRC 239 (250)
Q Consensus 160 ~~~~~~l~d~~fH~cV~~~~~~~~r~i~F~PPdg~F~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~e~~v~l~~~~~~~~~ 239 (250)
...++.++||+|||||++++|+++|+|+|+||||+|+||+||++.+..||+.++||++..+++++||+++++++|+++..
T Consensus 227 ~~~~v~l~d~~fHpcV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~ 306 (423)
T 1w63_M 227 KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRST 306 (423)
T ss_dssp -----CEEEEEECTTEEESSSSSCCEEEECCCSEEEEEEEEEEECCCCCTTCCEEEEEEETTTEEEEEEEEECCSCTTSE
T ss_pred ccCceEcccccccccccHHHhCCCCeEEEECCCCcEEEEEEEecCCcCCCEEEEEEEEecCCCEEEEEEEEcccCCCcce
Confidence 34567899999999999999999999999999999999999998777556678999997667799999999999988764
Q ss_pred -cceeEEeecCC
Q 025655 240 -SDINGICIICT 250 (250)
Q Consensus 240 -a~v~i~ip~p~ 250 (250)
.++.|+||+|.
T Consensus 307 ~~~V~I~IP~P~ 318 (423)
T 1w63_M 307 ANNVEIHIPVPN 318 (423)
T ss_dssp EESCEEEEECCT
T ss_pred eeEEEEEEeCCC
Confidence 49999999994
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=1.7e-49 Score=358.48 Aligned_cols=194 Identities=40% Similarity=0.742 Sum_probs=137.5
Q ss_pred eecChhhhhhhhccccccccc-----ccCCCCCccccccccccCcccccceEEEEEEEeEEEEEccCCcEEEEEEEEEEE
Q 025655 57 QYTEANILSEFIKTDAYRMEV-----TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALK 131 (250)
Q Consensus 57 ~~t~~~~Lk~~i~~~~~~~~~-----~~~~~~~~~~~~~wR~~~~~~~~nEi~vdV~E~i~~~~~~~G~i~~~~i~G~I~ 131 (250)
|+||++.||+||..+++..+. ...++++.+++++||+.|++|++|||||||+|+++++++++|.+++++|.|+|+
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~ 80 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVV 80 (314)
T ss_dssp -------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEE
Confidence 789999999999999876431 235567778899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEeccchhhhhccCC-------CCCcceeccccccccccccccccCCceeEecCCCCceEEEEEEecC
Q 025655 132 MRTYLSGMPECKLGLNDRILLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNT 204 (250)
Q Consensus 132 ~~s~LsG~P~~~l~ln~~~~~~~~~~~-------~~~~~~~l~d~~fH~cV~~~~~~~~r~i~F~PPdg~F~Lm~Yr~~~ 204 (250)
|+++|+|||+|+|+||++..++.+++. ....++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.
T Consensus 81 ~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~ 160 (314)
T 1i31_A 81 MKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTK 160 (314)
T ss_dssp EEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEEEEEECS
T ss_pred EEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEEEEEecC
Confidence 999999999999999998766543221 0135678999999999999999999999999999999999999988
Q ss_pred CCcCcEEEEEEEEECcceEEEEEEEEeecCCccccc-ceeEEeecCC
Q 025655 205 QVKPLIWVEAQVERHSRSRVEILVKARSQFKERRCS-DINGICIICT 250 (250)
Q Consensus 205 ~~~P~~~v~~~~~~~~~~~~e~~v~l~~~~~~~~~a-~v~i~ip~p~ 250 (250)
+..||+.+.|+++..+++++||+++++++|+++..+ ++.|+||+|.
T Consensus 161 ~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~ 207 (314)
T 1i31_A 161 DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPL 207 (314)
T ss_dssp SCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEECCT
T ss_pred CcCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEEEECCC
Confidence 775555679999987667999999999999887655 9999999984
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=2.3e-44 Score=317.94 Aligned_cols=160 Identities=63% Similarity=1.129 Sum_probs=146.3
Q ss_pred cccccCcccccceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEEeCCCCeEEEEeccchhhhhccCCCCCcceecccc
Q 025655 90 SWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDI 169 (250)
Q Consensus 90 ~wR~~~~~~~~nEi~vdV~E~i~~~~~~~G~i~~~~i~G~I~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~l~d~ 169 (250)
+||+.|++|++|||||||+|+++++++++|.++.++|.|+|.|+++|+|||+|+|+||++..++..++. ...++.++||
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~~-~~~~~~l~d~ 79 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVELEDV 79 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTCT-TSCCBCCEEE
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCcccccccccc-ccCccCcccc
Confidence 699999999999999999999999999999999999999999999999999999999999876655432 2457789999
Q ss_pred ccccccccccccCCceeEecCCCCceEEEEEEecCCCcCcEEEEEEEEECcceEEEEEEEEeecCCccccc-ceeEEeec
Q 025655 170 KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERRCS-DINGICII 248 (250)
Q Consensus 170 ~fH~cV~~~~~~~~r~i~F~PPdg~F~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~e~~v~l~~~~~~~~~a-~v~i~ip~ 248 (250)
+|||||+++.|+++|+|+|+||||+|+||+||++.+..||+.++|+++..+.++++|+++++++|+++..+ ++.|+||+
T Consensus 80 ~fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~~~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~~~~~nV~I~IP~ 159 (266)
T 4en2_M 80 KFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPV 159 (266)
T ss_dssp EECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCCCCCSEEEEEEEEEEETTEEEEEEEEEECBCTTCEEEEEEEEEEC
T ss_pred ccccccCHhHccccceEEEeCCCCceEEEEEEecCCCCCCEEEEEEEecCCCEEEEEEEEEecCCCCCcEEEEEEEEECC
Confidence 99999999999999999999999999999999988777777889999987777999999999999887655 99999999
Q ss_pred CC
Q 025655 249 CT 250 (250)
Q Consensus 249 p~ 250 (250)
|.
T Consensus 160 P~ 161 (266)
T 4en2_M 160 PN 161 (266)
T ss_dssp CT
T ss_pred CC
Confidence 94
No 5
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=9.6e-44 Score=318.93 Aligned_cols=168 Identities=29% Similarity=0.557 Sum_probs=134.3
Q ss_pred CCCCCccccc-cccccCcccccceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEEeCCCCeEEEEeccchhhhhccCC
Q 025655 80 RPPMAVTNAV-SWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRS 158 (250)
Q Consensus 80 ~~~~~~~~~~-~wR~~~~~~~~nEi~vdV~E~i~~~~~~~G~i~~~~i~G~I~~~s~LsG~P~~~l~ln~~~~~~~~~~~ 158 (250)
.+++++++++ +||+. +|++|||||||+|+|+++++++|.+++++|.|+|.|+++|+|||+|+|+||++..+++++..
T Consensus 13 ~~~~a~~~pv~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~ 90 (301)
T 3l81_A 13 APSSAASRPVLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELR 90 (301)
T ss_dssp ----------------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTT
T ss_pred cCchhhcCcccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcccccccccccc
Confidence 3455666665 99975 89999999999999999999999999999999999999999999999999999876655433
Q ss_pred CCCcceeccccccccccccccccCCceeEecCCCCceEEEEEEecCCC---cCcEEEEEEEEECcc-eEEEEEEEEeecC
Q 025655 159 TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQV---KPLIWVEAQVERHSR-SRVEILVKARSQF 234 (250)
Q Consensus 159 ~~~~~~~l~d~~fH~cV~~~~~~~~r~i~F~PPdg~F~Lm~Yr~~~~~---~P~~~v~~~~~~~~~-~~~e~~v~l~~~~ 234 (250)
+...++.|+||+|||||+++.|+++|+|+|+||||+|+||+||++.+. +|+ .+.||++..++ .++||+++++++|
T Consensus 91 ~~~~~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~-~v~~~v~~~~~~~~ie~~l~l~~~f 169 (301)
T 3l81_A 91 GYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPF-RLFPSVQWDRGSGRLQVYLKLRCDL 169 (301)
T ss_dssp CCCSSSEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSE-EEEEEEEECTTTSEEEEEEEEEECS
T ss_pred cccCceEccccccccccChhHccccceEEecCCCCeeEEEEEEecCCCccCCCE-EEEEEEEECCCcEEEEEEEEEecCC
Confidence 345678899999999999999999999999999999999999998653 555 57899998764 7999999999999
Q ss_pred Cccccc-ceeEEeecCC
Q 025655 235 KERRCS-DINGICIICT 250 (250)
Q Consensus 235 ~~~~~a-~v~i~ip~p~ 250 (250)
+++..+ ++.|+||+|.
T Consensus 170 ~~~~~~~nV~I~IPvP~ 186 (301)
T 3l81_A 170 LSKSQALNVRLHLPLPR 186 (301)
T ss_dssp CTTCEEEEEEEEEECCT
T ss_pred CCCcEEEEEEEEEcCCC
Confidence 988766 9999999994
No 6
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=3.3e-43 Score=324.89 Aligned_cols=165 Identities=40% Similarity=0.719 Sum_probs=139.4
Q ss_pred cccc-cc---cccCcccccceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEEeCCCCeEEEEeccchhhhhccCC---
Q 025655 86 TNAV-SW---RSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRS--- 158 (250)
Q Consensus 86 ~~~~-~w---R~~~~~~~~nEi~vdV~E~i~~~~~~~G~i~~~~i~G~I~~~s~LsG~P~~~l~ln~~~~~~~~~~~--- 158 (250)
++++ || |..|++|+||||||||+|+++++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..++..++.
T Consensus 102 s~~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~ 181 (385)
T 3ml6_A 102 SPQPPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTAD 181 (385)
T ss_dssp -CCCCCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC-------------
T ss_pred CCCCCCchhccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccccccccc
Confidence 3444 99 7889999999999999999999999999999999999999999999999999999998766544321
Q ss_pred ----CCCcceeccccccccccccccccCCceeEecCCCCceEEEEEEecCCCcCcEEEEEEEEECcceEEEEEEEEeecC
Q 025655 159 ----TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQF 234 (250)
Q Consensus 159 ----~~~~~~~l~d~~fH~cV~~~~~~~~r~i~F~PPdg~F~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~e~~v~l~~~~ 234 (250)
+...++.|+||+|||||+++.|+++|+|+|+||||+|+||+||++.+..||+.+.|+++..++++++|+++++++|
T Consensus 182 ~~~~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~Pf~i~~~v~~~~~~~vei~v~lk~~f 261 (385)
T 3ml6_A 182 ETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNF 261 (385)
T ss_dssp ---------CCCCEEEECTTBCCCCSSSCSEEEECCCSEEEEEEEEEECSSCCCSEEEEEEEEEETTTEEEEEEEEEECS
T ss_pred cccccccCceEccccccccccChhHccccceEEEeCCCCceEEEEEEcCCCCCCCEEEEEEEEeCCCeEEEEEEEEeecC
Confidence 1235688999999999999999999999999999999999999987765555678999988778999999999999
Q ss_pred Cccccc-ceeEEeecCC
Q 025655 235 KERRCS-DINGICIICT 250 (250)
Q Consensus 235 ~~~~~a-~v~i~ip~p~ 250 (250)
+++..+ ++.|+||+|.
T Consensus 262 ~~~~~~~nV~I~IP~P~ 278 (385)
T 3ml6_A 262 KPSLLAQKIEVRIPTPL 278 (385)
T ss_dssp CTTCCEEEEEEEEECCT
T ss_pred CCcceEEEEEEEecCCC
Confidence 988766 8999999994
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.74 E-value=1.3e-18 Score=142.07 Aligned_cols=74 Identities=26% Similarity=0.263 Sum_probs=71.2
Q ss_pred CeeecCCCCHHHHHHHHHHHHHHHHHhhcccCHHHHHhhHHHHHHHHHHHhcCCeeeecChhhhhhhhcccccc
Q 025655 1 MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYR 74 (250)
Q Consensus 1 v~~t~~~~n~~~~~e~L~~l~~~l~~y~g~l~e~~i~~n~~~iyelLdE~id~G~p~~t~~~~Lk~~i~~~~~~ 74 (250)
|+++++|.|+++++++||++++++++|||+++|+.|++||..+|++||||+|+||||.|+++.|+++|.+++..
T Consensus 68 v~~~~~~~Nel~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l 141 (158)
T 1w63_Q 68 CCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLL 141 (158)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999988654
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.71 E-value=9.4e-18 Score=134.53 Aligned_cols=72 Identities=28% Similarity=0.385 Sum_probs=67.5
Q ss_pred CeeecCCCCHHHHHHHHHHHHHHHHHhhcccCHHHHHhhHHHHHHHHHHHhcCCeeeec-Chhhhhhhhcccc
Q 025655 1 MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYT-EANILSEFIKTDA 72 (250)
Q Consensus 1 v~~t~~~~n~~~~~e~L~~l~~~l~~y~g~l~e~~i~~n~~~iyelLdE~id~G~p~~t-~~~~Lk~~i~~~~ 72 (250)
++++++|.|+++++++||++++++++|||+++|+.|++||..+|++||||+|+||||.| +.+.||.++.++.
T Consensus 68 v~~~~~~~N~l~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~ 140 (142)
T 2vgl_S 68 CICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQS 140 (142)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhc
Confidence 57899999999999999999999999999999999999999999999999999999998 5778999987653
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.66 E-value=1.2e-16 Score=129.66 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=66.2
Q ss_pred CeeecCCCCHHHHHHHHHHHHHHHHHhh-cccCHHHHHhhHHHHHHHHHHHhcCCeeeecChhhhhhhhcccc
Q 025655 1 MTASRQNCNAASLLFFLHRVVDVFKHYF-EELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDA 72 (250)
Q Consensus 1 v~~t~~~~n~~~~~e~L~~l~~~l~~y~-g~l~e~~i~~n~~~iyelLdE~id~G~p~~t~~~~Lk~~i~~~~ 72 (250)
+++++.|.|++.++++||++++++.+|| |+++|+.|+.||..+|++||||+|+|+||.|+++.+.+.+.+.+
T Consensus 78 v~~~~~~eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 78 YVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred EEEEcCCCChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 5789999999999999999999999999 89999999999999999999999999999999999999887653
No 10
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.2 Score=44.69 Aligned_cols=132 Identities=16% Similarity=0.267 Sum_probs=76.6
Q ss_pred ccceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEEeCC-------CCeEEEEeccchhhhhccCCCCCcceecccccc
Q 025655 99 KKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSG-------MPECKLGLNDRILLEAQGRSTKGKAIDLDDIKF 171 (250)
Q Consensus 99 ~~nEi~vdV~E~i~~~~~~~G~i~~~~i~G~I~~~s~LsG-------~P~~~l~ln~~~~~~~~~~~~~~~~~~l~d~~f 171 (250)
..-++...+.|.|++.+.. |.+.++.|.|+|.+. |..| .+.+.++|++-..+..- +=+-+|
T Consensus 66 ~~pGLnASI~E~VNA~Fkg-g~~tk~~v~GEiaLs-y~~~~~s~~p~p~~l~fRL~N~~~Lekv----------~pN~~f 133 (328)
T 3g9h_A 66 SQFGLNASIAEVLNASFKD-GMLQNSQLIGEIALN-YLPNSVMNSPLPIGINLRINNGAKFEKV----------ILNQAF 133 (328)
T ss_dssp -CCEEEEEEEEEEEEEEET-TEEEEEEEEEEEEEE-EECCSSSCCCCCSEEEEEEETGGGEEEE----------EECTTT
T ss_pred CCCceeEEEEEEEEEEEEC-CcEEEEEEEEEEEEe-cCCCccccCCCCccEEEEecCcchhhee----------eCCHHH
Confidence 3568889999999999864 779999999998775 4444 24578888653221110 111122
Q ss_pred ccccccccccCCceeEecCC---CCceEEEEEEecCCCcCcEEEEEEEEEC-cceEEEEEEEEeecCCcc----ccccee
Q 025655 172 HQCVRLARFENDRTISFIPP---DGSFDLMTYRLNTQVKPLIWVEAQVERH-SRSRVEILVKARSQFKER----RCSDIN 243 (250)
Q Consensus 172 H~cV~~~~~~~~r~i~F~PP---dg~F~Lm~Yr~~~~~~P~~~v~~~~~~~-~~~~~e~~v~l~~~~~~~----~~a~v~ 243 (250)
-.++.-+.|. |-++ ...-.+++|+++....|+++ .+.-+.. ....+-+..++.+.++.. ...|++
T Consensus 134 v~~~~~~eF~------vn~~~L~sktv~~lKYqVs~~~~PL~l-~p~WK~E~~qtsliI~Yk~NP~~~~~~~~~~L~Nv~ 206 (328)
T 3g9h_A 134 IERVAPEEFK------VNPSFIDSRTLGAIKYSIKEPIAPIVI-HPVWRFESHQASVVLTVKMSPSLPDEISQIVIEDLV 206 (328)
T ss_dssp EEEEETTEEE------ECTTTTBTCEEEEEEEEEESCCCSEEE-EEEEEECSSEEEEEEEEEECTTSCTTCCEEEEEEEE
T ss_pred hccCCCCCEE------EchHHhcccceeeEEEEECCCCCCeEE-EeeeecCCCeeEEEEEEEECCCCcCcCCCceeeeEE
Confidence 2222211221 1111 12367899999875577765 4444433 233444444456666641 456999
Q ss_pred EEeecC
Q 025655 244 GICIIC 249 (250)
Q Consensus 244 i~ip~p 249 (250)
+.+|+.
T Consensus 207 ~~V~ld 212 (328)
T 3g9h_A 207 VFVNID 212 (328)
T ss_dssp EEEEBC
T ss_pred EEEEeC
Confidence 999875
No 11
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=43.17 E-value=4.5 Score=32.41 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcccCHHHH-----HhhHHHHHHHHH-HHhcCCeeeec
Q 025655 7 NCNAASLLFFLHRVVDVFKHYFEELEEESL-----RDNFVVVYELLD-EMMDFGYPQYT 59 (250)
Q Consensus 7 ~~n~~~~~e~L~~l~~~l~~y~g~l~e~~i-----~~n~~~iyelLd-E~id~G~p~~t 59 (250)
+.++...=+||+.|...+.+++|.++++.+ -.+..+.|-+|| |++++|+.|..
T Consensus 10 ~~~~~~~d~fl~~~~da~~~~i~~l~~e~m~~Ls~~Q~tLLAy~~L~~EV~~GGFvQLI 68 (166)
T 3vjz_A 10 DIRQQEPSALLYTLVSAYLEHTAQTGDESLSCLSDDQHTLTAFCYLDSQVEEGGFVQLI 68 (166)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHHHCTTSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccChHHHHHHHHHHHHHHHHHhhHHHHHHcCHHHHHHHHHHHHHHHHHcCChHhhh
Confidence 455666778999999999999987555433 345677777665 77789998754
No 12
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=38.37 E-value=60 Score=24.58 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=18.8
Q ss_pred HHhhHHHHHHHHHHHhcCCeee
Q 025655 36 LRDNFVVVYELLDEMMDFGYPQ 57 (250)
Q Consensus 36 i~~n~~~iyelLdE~id~G~p~ 57 (250)
-+++|..|.+++.+|=++|.|-
T Consensus 87 ~~~~~~~i~~Lmq~mQ~~G~PP 108 (126)
T 2wl8_A 87 QKARFEMVLDLMQQLQDLGHPP 108 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCc
Confidence 3578999999999999999874
No 13
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=32.19 E-value=24 Score=19.21 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhcccC
Q 025655 17 LHRVVDVFKHYFEELE 32 (250)
Q Consensus 17 L~~l~~~l~~y~g~l~ 32 (250)
+.++.+-|+|||+++.
T Consensus 5 ~kkIgQkIkdFf~~l~ 20 (26)
T 2fcg_F 5 FKRIVQRIKDFLRNLV 20 (26)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5678889999998753
Done!