BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025657
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2
Angstroms Resolution
Length = 370
Score = 413 bits (1061), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/236 (84%), Positives = 212/236 (89%)
Query: 6 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMT 65
EITNV EYEA+AK+KLPKMVYDYYASGAEDQWTL ENRNAFSRILFRPRIL DV+ IDMT
Sbjct: 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 66 TTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP 125
TT+LGF ISMPIMIAPTA QKMAHPEGE GTIMTLSSWATSSVEEV+STGP
Sbjct: 63 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
GIRFFQLYV K RNV AQLV+RAERAGFKAIALTVDTPRLGRREADIKNRFVLPP LTLK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182
Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAED 241
N+EG+ +GKMDK +DSGL+SYVA QIDRSL+WKDV WLQTITSLPILVKGV+TAED
Sbjct: 183 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAED 238
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With
Bound Active- Site Inhibitors
pdb|1AL8|A Chain A, Three-Dimensional Structure Of Glycolate Oxidase With
Bound Active- Site Inhibitors
Length = 359
Score = 412 bits (1060), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/236 (84%), Positives = 212/236 (89%)
Query: 6 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMT 65
EITNV EYEA+AK+KLPKMVYDYYASGAEDQWTL ENRNAFSRILFRPRIL DV+ IDMT
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 66 TTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP 125
TT+LGF ISMPIMIAPTA QKMAHPEGE GTIMTLSSWATSSVEEV+STGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
GIRFFQLYV K RNV AQLV+RAERAGFKAIALTVDTPRLGRREADIKNRFVLPP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAED 241
N+EG+ +GKMDK +DSGL+SYVA QIDRSL+WKDV WLQTITSLPILVKGV+TAED
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAED 237
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
pdb|1GYL|B Chain B, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
Length = 369
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/236 (83%), Positives = 212/236 (89%)
Query: 6 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMT 65
EITNV EYEA+AK+KLPKMVYD+YASGAEDQWTL ENRNAFSRILFRPRIL DV+ IDMT
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDFYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 66 TTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP 125
TT+LGF ISMPIMIAPTA QKMAHPEGE GTIMTLSSWATSSVEEV+STGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
GIRFFQLYV K RNV AQLV+RAERAGFKAIALTVDTPRLGRREADIKNRFVLPP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAED 241
N+EG+ +GKMDK +DSGL+SYVA QIDRSL+WKDV WLQTITSLPILVKGV+TAED
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAED 237
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In
Complex With Cdst
pdb|2RDU|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Glyoxylate
pdb|2RDW|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Sulfate
Length = 387
Score = 243 bits (619), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 167/244 (68%), Gaps = 4/244 (1%)
Query: 2 TYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSK 61
+ + + + +YE AK LPK +YDYY SGA D+ TL +N AFSR PR+LR+V++
Sbjct: 17 SMLPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAE 76
Query: 62 IDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVS 121
D++T+VLG +SMPI + TA Q+MAH +GE GT M LSSWATSS+EEV+
Sbjct: 77 TDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVA 136
Query: 122 STGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP 180
GP +R+ QLY+ K R V +LV++AE+ G+KAI +TVDTP LG R D++NRF LPP
Sbjct: 137 EAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPP 196
Query: 181 HLTLKNYEGLYIG---KMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 237
L +KN+E + + + DDSGLA+YVA ID S++W+D+KWL+ +TSLPI+ KG+L
Sbjct: 197 QLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGIL 256
Query: 238 TAED 241
+D
Sbjct: 257 RGDD 260
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1
Length = 392
Score = 242 bits (618), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 167/244 (68%), Gaps = 4/244 (1%)
Query: 2 TYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSK 61
+ + + + +YE AK LPK +YDYY SGA D+ TL +N AFSR PR+LR+V++
Sbjct: 22 SMLPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAE 81
Query: 62 IDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVS 121
D++T+VLG +SMPI + TA Q+MAH +GE GT M LSSWATSS+EEV+
Sbjct: 82 TDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVA 141
Query: 122 STGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP 180
GP +R+ QLY+ K R V +LV++AE+ G+KAI +TVDTP LG R D++NRF LPP
Sbjct: 142 EAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPP 201
Query: 181 HLTLKNYEGLYIG---KMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 237
L +KN+E + + + DDSGLA+YVA ID S++W+D+KWL+ +TSLPI+ KG+L
Sbjct: 202 QLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGIL 261
Query: 238 TAED 241
+D
Sbjct: 262 RGDD 265
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|B Chain B, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|C Chain C, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|D Chain D, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate
Length = 370
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/242 (49%), Positives = 166/242 (68%), Gaps = 4/242 (1%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ + + +YE AK LPK +YDYY SGA D+ TL +N AFSR PR+LR+V++ D
Sbjct: 2 LPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETD 61
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSST 123
++T+VLG +SMPI + TA Q+MAH +GE GT M LSSWATSS+EEV+
Sbjct: 62 LSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEA 121
Query: 124 GP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHL 182
GP +R+ QLY+ K R V +LV++AE+ G+KAI +TVDTP LG R D++NRF LPP L
Sbjct: 122 GPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQL 181
Query: 183 TLKNYEGLYIG---KMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA 239
+KN+E + + + DDSGLA+YVA ID S++W+D+KWL+ +TSLPI+ KG+L
Sbjct: 182 RMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRG 241
Query: 240 ED 241
+D
Sbjct: 242 DD 243
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase
pdb|2A7P|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 3-Indolelactate
pdb|2A85|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 2- Hydroxyoctanoate
pdb|3GIY|A Chain A, Crystal Structures Of The G81a Mutant Of The Active
Chimera Of (S)-Mandelate Dehydrogenase And Its Complex
With Two Of Its Substrates
Length = 380
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 146/240 (60%), Gaps = 1/240 (0%)
Query: 9 NVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTV 68
NV +Y LA+++LPKMVYDY GAED++ ++ NR+ F + F+P+ L DVS+ + V
Sbjct: 7 NVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEV 66
Query: 69 LGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIR 128
LG SMP++I PTA P+G+ G LS+ + S+E+++ G
Sbjct: 67 LGKRQSMPLLIGPTALNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDL 126
Query: 129 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYE 188
+FQLYV HR + +V +A G+ + LT D G RE D+ NRF +PP LTLKN+E
Sbjct: 127 WFQLYVI-HREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFE 185
Query: 189 GLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSK 248
G+ +GKMDK + A+ ++ Q+D S NW+ ++WL+ + +LVKG+L+AED + +++
Sbjct: 186 GIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAE 245
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The
Membrane-Associated (S)- Mandelate Dehydrogenase From
Pseudomonas Putida At 2.15a Resolution
pdb|1P4C|A Chain A, High Resolution Structure Of Oxidized Active Mutant Of
(S)- Mandelate Dehydrogenase
pdb|1P5B|A Chain A, High Resolution Structure Of Reduced Active Mutant Of
(S)-Mandelate Dehydrogenase
Length = 380
Score = 187 bits (475), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 145/240 (60%), Gaps = 1/240 (0%)
Query: 9 NVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTV 68
NV +Y LA+++LPKMVYDY GAED++ ++ NR+ F + F+P+ L DVS+ + V
Sbjct: 7 NVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEV 66
Query: 69 LGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIR 128
LG SMP++I PT P+G+ G LS+ + S+E+++ G
Sbjct: 67 LGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDL 126
Query: 129 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYE 188
+FQLYV HR + +V +A G+ + LT D G RE D+ NRF +PP LTLKN+E
Sbjct: 127 WFQLYVI-HREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFE 185
Query: 189 GLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSK 248
G+ +GKMDK + A+ ++ Q+D S NW+ ++WL+ + +LVKG+L+AED + +++
Sbjct: 186 GIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAE 245
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|B Chain B, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|C Chain C, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|D Chain D, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|E Chain E, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|F Chain F, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|G Chain G, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|H Chain H, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
Length = 352
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 138/237 (58%), Gaps = 8/237 (3%)
Query: 7 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTT 66
+ + +++A A+++L K +D+ A+D T EN AF RI RPR LRD+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 67 TVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP- 125
T+ G IS PI I+PTAF +A P+GE +SS+A+ S+E++ + P
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
G R+FQLY+ + + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L ++ LK
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLK 181
Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDG 242
+ L K +K S S+ S W D+ LQ+IT LPI++KG+LT ED
Sbjct: 182 DLRAL---KEEKPTQSVPVSFPKA----SFCWNDLSLLQSITRLPIILKGILTKEDA 231
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|B Chain B, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|C Chain C, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole
Length = 352
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 134/237 (56%), Gaps = 8/237 (3%)
Query: 7 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTT 66
+ + +++A A+++L K +D+ A+D T EN AF RI RPR LRD+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 67 TVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP- 125
T+ G IS PI I+PTAF +A P+GE +SS+A+ S+E++ + P
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
G R+FQLY+ + + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L ++
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKA 181
Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDG 242
L K +K S + S W D+ LQ+IT LPI++KG+LT ED
Sbjct: 182 ALRAL---KEEKPTQSVPVLFPKA----SFCWNDLSLLQSITRLPIILKGILTKEDA 231
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|1 Chain 1, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|2 Chain 2, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|3 Chain 3, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Y Chain Y, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Z Chain Z, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 226
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/96 (81%), Positives = 81/96 (84%)
Query: 65 TTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTG 124
TTT+LGF ISMPIMIAPTA QKMAHPEGE GTIMTLSSWATSSVEEV+STG
Sbjct: 1 TTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTG 60
Query: 125 PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTV 160
PGIRFFQLYV K RNV AQLV+RAERAGFKAIALTV
Sbjct: 61 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 96
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 24/25 (96%)
Query: 217 WKDVKWLQTITSLPILVKGVLTAED 241
WKDV WLQTITSLPILVKGV+TAED
Sbjct: 97 WKDVAWLQTITSLPILVKGVITAED 121
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 139/248 (56%), Gaps = 20/248 (8%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 20 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 79
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGTIM--TLSSWATSSVEEV 120
++T +LG ++ +P ++ TA K+ +P EGE T + +S+ A+ S EE+
Sbjct: 80 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 139
Query: 121 SSTGPG---IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF- 176
P I+++QLYV R + LVK E+ G KA+ +TVD P LG+RE D+K +F
Sbjct: 140 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 199
Query: 177 ---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
P + N E + G + ++ ID SL WKD++ L+ T LPI++
Sbjct: 200 NTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVI 249
Query: 234 KGVLTAED 241
KGV ED
Sbjct: 250 KGVQRTED 257
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 154 bits (389), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 139/248 (56%), Gaps = 20/248 (8%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGTIMT--LSSWATSSVEEV 120
++T +LG ++ +P ++ TA K+ +P EGE T + +S+ A+ S EE+
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 121 SSTGPG---IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF- 176
P I+++QLYV R + LVK E+ G KA+ +TVD P LG+RE D+K +F
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 177 ---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
P + N E + G + ++ ID SL WKD++ L+ T LPI++
Sbjct: 299 NTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVI 348
Query: 234 KGVLTAED 241
KGV ED
Sbjct: 349 KGVQRTED 356
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 141/244 (57%), Gaps = 12/244 (4%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 18 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 77
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGTIM--TLSSWATSSVEEV 120
++T +LG ++ +P ++ TA K+ +P EGE T + +S+ A+ S EE+
Sbjct: 78 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 137
Query: 121 SSTGPG---IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFV 177
P I+++QLYV R + LVK E+ G KA+ +TVD P LG++E D+K +F
Sbjct: 138 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQKEKDMKLKF- 196
Query: 178 LPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 237
T ++ + K + + G + ++ ID SL WKD++ L+ T LPI++KGV
Sbjct: 197 ---SNTKAGFKAMK--KTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 251
Query: 238 TAED 241
ED
Sbjct: 252 RTED 255
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 139/248 (56%), Gaps = 20/248 (8%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 114 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 173
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGTIMT--LSSWATSSVEEV 120
++T +LG ++ +P ++ TA K+ +P EGE T + +S+ A+ S EE+
Sbjct: 174 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 233
Query: 121 SSTGPG---IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF- 176
P I+++QLYV R + LVK E+ G KA+ +TVD P LG+RE D+K +F
Sbjct: 234 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 293
Query: 177 ---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
P + N E + G + ++ ID SL WKD++ L+ T LPI++
Sbjct: 294 NTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVI 343
Query: 234 KGVLTAED 241
KGV ED
Sbjct: 344 KGVQRTED 351
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 139/248 (56%), Gaps = 20/248 (8%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGTIMT--LSSWATSSVEEV 120
++T +LG ++ +P ++ TA K+ +P EGE T + +S+ A+ S EE+
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 121 SSTGPG---IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF- 176
P I+++QLYV R + LVK E+ G KA+ +TVD P LG+RE D+K +F
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 177 ---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
P + N E + G + ++ ID SL WKD++ L+ T LPI++
Sbjct: 299 NTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVI 348
Query: 234 KGVLTAED 241
KGV ED
Sbjct: 349 KGVQRTED 356
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 154 bits (388), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 139/248 (56%), Gaps = 20/248 (8%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGTIMT--LSSWATSSVEEV 120
++T +LG ++ +P ++ TA K+ +P EGE T + +S+ A+ S EE+
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEI 238
Query: 121 SSTGPG---IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF- 176
P I+++QLYV R + LVK E+ G KA+ +TVD P LG+RE D+K +F
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 177 ---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
P + N E + G + ++ ID SL WKD++ L+ T LPI++
Sbjct: 299 NTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVI 348
Query: 234 KGVLTAED 241
KGV ED
Sbjct: 349 KGVQRTED 356
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 139/248 (56%), Gaps = 20/248 (8%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + +Y+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAFYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGTIMT--LSSWATSSVEEV 120
++T +LG ++ +P ++ TA K+ +P EGE T + +S+ A+ S EE+
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 121 SSTGPG---IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF- 176
P I+++QLYV R + LVK E+ G KA+ +TVD P LG+RE D+K +F
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 177 ---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
P + N E + G + ++ ID SL WKD++ L+ T LPI++
Sbjct: 299 NTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVI 348
Query: 234 KGVLTAED 241
KGV ED
Sbjct: 349 KGVQRTED 356
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 138/248 (55%), Gaps = 20/248 (8%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGTIMT--LSSWATSSVEEV 120
++T +LG ++ +P ++ T K+ +P EGE T + +S+ A+ S EE+
Sbjct: 179 ISTDMLGSHVDVPFYVSATGLCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEI 238
Query: 121 SSTGPG---IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF- 176
P I+++QLYV R + LVK E+ G KA+ +TVD P LG+RE D+K +F
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 177 ---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
P + N E + G + ++ ID SL WKD++ L+ T LPI++
Sbjct: 299 NTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVI 348
Query: 234 KGVLTAED 241
KGV ED
Sbjct: 349 KGVQRTED 356
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
Length = 374
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 20/248 (8%)
Query: 1 MTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVS 60
+ YI ++ N + E A + +P ++Y A + D+WT + N A+ L PR+ +DV
Sbjct: 14 IKYI-DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVE 72
Query: 61 KIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEV 120
D +T +LG I P ++AP A +AH E GTIM++S+++ ++ EE+
Sbjct: 73 APDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEI 132
Query: 121 S-STGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLP 179
S G R+FQ+Y+ K + ++ A+ G AI LT D+ G R+ D+KN+FV P
Sbjct: 133 SEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYP 192
Query: 180 PHLTL-KNY-----EGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
+ + + Y EG+ + + Y A++ + ++ +D++ + + LP+ V
Sbjct: 193 FGMPIVQRYLRGTAEGMSLNNI----------YGASK--QKISPRDIEEIAAHSGLPVFV 240
Query: 234 KGVLTAED 241
KG+ ED
Sbjct: 241 KGIQHPED 248
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
Length = 374
Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 20/248 (8%)
Query: 1 MTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVS 60
+ YI ++ N + E A + +P ++Y A + D+WT + N A+ L PR+ +DV
Sbjct: 14 IKYI-DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVE 72
Query: 61 KIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEV 120
D +T +LG I P ++AP A +AH E GTIM++S+++ ++ EE+
Sbjct: 73 APDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEI 132
Query: 121 S-STGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLP 179
S G R+FQ+Y+ K + ++ A+ G AI LT D+ G R+ D+KN+FV P
Sbjct: 133 SEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYP 192
Query: 180 PHLTL-KNY-----EGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
+ + + Y EG+ + + Y A++ + ++ +D++ + + LP+ V
Sbjct: 193 FGMPIVQRYLRGTAEGMSLNNI----------YGASK--QKISPRDIEEIAGHSGLPVFV 240
Query: 234 KGVLTAED 241
KG+ ED
Sbjct: 241 KGIQHPED 248
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
pdb|2NLI|B Chain B, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
Length = 368
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 20/248 (8%)
Query: 1 MTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVS 60
+ YI ++ N + E A + +P ++Y A + D+WT + N A+ L PR+ +DV
Sbjct: 8 IKYI-DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVE 66
Query: 61 KIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEV 120
D +T +LG I P ++AP A +AH E GTIM++S+++ ++ EE+
Sbjct: 67 APDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEI 126
Query: 121 S-STGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLP 179
S G R+FQ+Y+ K + ++ A+ G AI LT D+ G R+ D+KN+FV P
Sbjct: 127 SEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYP 186
Query: 180 PHLTL-KNY-----EGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
+ + + Y EG+ + + Y A++ + ++ +D++ + + LP+ V
Sbjct: 187 FGMPIVQRYLRGTAEGMSLNNI----------YGASK--QKISPRDIEEIAGHSGLPVFV 234
Query: 234 KGVLTAED 241
KG+ ED
Sbjct: 235 KGIQHPED 242
>pdb|3NQB|A Chain A, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3NQB|B Chain B, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3T81|A Chain A, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T81|B Chain B, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T8L|A Chain A, Crystal Structure Of Adenine Deaminase With MnFE
pdb|3T8L|B Chain B, Crystal Structure Of Adenine Deaminase With MnFE
Length = 608
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 152 GFKAIALTVDTPRL---GRREADIKNRFVLPP 180
G K T+D PR G EAD+K+ FV+PP
Sbjct: 409 GAKVRLATIDRPRFTQWGETEADVKDGFVVPP 440
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 27/106 (25%)
Query: 143 QLVKRAERAGFKAIALTVD------TPRLGRRE------ADIKNRFVLP--PHLTLKNY- 187
QL+KR + G + LT+D PRLG+ +KN + P PH + +
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 188 -------EGLYI-----GKMDKTDDSGLASYVANQIDRSLNWKDVK 221
EG Y+ G +D D A + +D LN +D+K
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIK 166
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 27/106 (25%)
Query: 143 QLVKRAERAGFKAIALTVD------TPRLGRRE------ADIKNRFVLP--PHLTLKNY- 187
QL+KR + G + LT+D PRLG+ +KN + P PH + +
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 188 -------EGLYI-----GKMDKTDDSGLASYVANQIDRSLNWKDVK 221
EG Y+ G +D D A + +D LN +D+K
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIK 166
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 425
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 27/106 (25%)
Query: 143 QLVKRAERAGFKAIALTVD------TPRLGRRE------ADIKNRFVLP--PHLTLKNY- 187
QL+KR + G + LT+D PRLG+ +KN + P PH + +
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 188 -------EGLYI-----GKMDKTDDSGLASYVANQIDRSLNWKDVK 221
EG Y+ G +D D A + +D LN +D+K
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIK 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,695,710
Number of Sequences: 62578
Number of extensions: 244760
Number of successful extensions: 748
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 28
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)